Citrus Sinensis ID: 007454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600---
Protein Sequence
MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV
Secondary Structure (PSIPRED)
cccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHccccHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHHccEEEEEEccccccccccccccccccccEEEEEEcccccccccccEEEEEEcccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHcccccccccHHHHHccHHHHHHcccccccccccEEEEccHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccEEEEEEEccccccccHHHHHHHHHHccEEEcccccccHHHHHHHHHccHHHHHHHHHHccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHcccccccccccccccccEEEHccccccccccccccccHHHHHHHHHHHHHHHcccHHHcEEEEEccHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHcccccccccccEEEEEcccccccccccHHHHHHHHccccEEEEEHHHHccccccccccccccccEEEEEEEHEccccccccHHEEEcHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHcHHHHHHHHHHHHHHccccccEEEEcHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccEEEEEEEcccccEccHHHHHHHHHHcccEEEEccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccccEEEcccccEEEc
Coil and Loop (DISEMBL)
MQSPCLREVSQaclcthggccpspffslspdplhkvsksrntsadCRRDFAAvtassifpdtqftnheslpsLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLslsnhtcldyfgiglfsynqlhkqesspshlrpslpsqnldipffsvsyktgnlktqllhggqesgLESAMKKRIMDFLNisendyvydYESEAVEAMIRTSEKRGARvmsaefswprlrinSEKLRKMVVSkgkkkkqrglfvfplhsrmtgaryPYLWMRIAQENDWHILIDAcalgpkdmdsfglslvrpdflicsfyqifgenpsgfgclfvkkstvpilvdntssgmvsllpakkqlwltdefsscetepeqtsksKQEKVAatntfsgpmsiemrqsgkleqgeISEVRRAEADSIqqknantnggggseiecrgldqvdsLGLTMISRRGRCLINWLVNALMklqhpntegnalvkiygpkirfdrgpalafnvfdwkrekiEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDReaksksdnnrkdkanlGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTAldqktiev
Flexible Loop (DISEMBL)
MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKrgarvmsaefswprlrinsekLRKMvvskgkkkkqrglfvfplhsrmtGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCEtepeqtskskqekvaatntfsgpmsiemrqsgklEQGEISEVRRaeadsiqqknantnggggseieCRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTdreaksksdnnrkdkanlgITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYtaldqktiev
Low Complexity Region (SEG)
MQSPCLREVSQACLCTHGGCCpspffslspdplHKVSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQEsspshlrpslpsQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEklrkmvvskgkkkkqrglFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV
Disordered region (IsUnstruct)
*******EVSQACLCTHGGCCPSPFFSL********************DFAAVTASSIFPDT*F***********SLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQL******************LDIPFFSVSYKTGNLKTQLLH***********KKRIMDFLNISENDYVYDYESEAVEAMIR********VMSAEFSWPRLRIN****************QRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE**********************************************************************ECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY***************************NLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALD******
Disordered Region (DISOPRED)
************CL************************************************************QSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPS********QNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE**DRE**SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQ**I**
Disordered Region (DISEMBL)
********VSQACLCTHGGCCPSPFFSLSPDPL***********DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLH**********PSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK**********QRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE********************ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK*****************NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV
Disordered Region (DISPRO)
**********QACLCTHGGCCPSPFF*********************************PDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTD*************************************GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	603	2.2.26 [Sep-21-2011]
Q96EN8	888	Molybdenum cofactor sulfu	yes	no	0.466	0.316	0.243	3e-11
Q14CH1	862	Molybdenum cofactor sulfu	yes	no	0.703	0.491	0.213	9e-11
Q9N0E7	882	Molybdenum cofactor sulfu	yes	no	0.447	0.306	0.242	4e-10
Q9UV64	839	Molybdenum cofactor sulfu	yes	no	0.681	0.489	0.221	6e-09
Q8LGM7	816	Molybdenum cofactor sulfu	N/A	no	0.733	0.541	0.219	2e-08
A1CHL0	845	Molybdenum cofactor sulfu	N/A	no	0.582	0.415	0.219	5e-08
A1CX75	851	Molybdenum cofactor sulfu	N/A	no	0.474	0.336	0.229	3e-07
Q0CLW8	828	Molybdenum cofactor sulfu	N/A	no	0.689	0.502	0.238	3e-07
Q4WPE6	843	Molybdenum cofactor sulfu	yes	no	0.474	0.339	0.229	4e-07
B0Y691	843	Molybdenum cofactor sulfu	N/A	no	0.474	0.339	0.229	4e-07

>sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 135/365 (36%), Gaps = 84/365 (23%)

Query: 246 LFVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACALGPKDMDSFGLSLVR 296
           LF +P  S  +G RYP  W+          ++    W +L+DA +          LS  +
Sbjct: 197 LFCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASY--VSTSPLDLSAHQ 254

Query: 297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT-SSGMVSLLPAKKQLWLTDEFSSC 355
            DF+  SFY+IFG  P+G G L V     P+L       G  S   A +  ++       
Sbjct: 255 ADFVPISFYKIFG-FPTGLGALLVHNRAAPLLRKTYFGGGTASAYLAGEDFYI------- 306

Query: 356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNG 415
              P Q+                          + E G IS +     D I  K+     
Sbjct: 307 ---PRQSVAQ-----------------------RFEDGTISFL-----DVIALKH----- 330

Query: 416 GGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY---- 469
                    G D ++ L  G+  I +    L  +   AL  LQ+PN  G  +V+IY    
Sbjct: 331 ---------GFDTLERLTGGMENIKQHTFTLAQYTYVALSSLQYPN--GAPVVRIYSDSE 379

Query: 470 --GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 527
              P++   +GP + FNV D K   I    V K+A   NI L  G   +     ++    
Sbjct: 380 FSSPEV---QGPIINFNVLDDKGNIIGYSQVDKMASLYNIHLRTGCFCNTGACQRHLGIS 436

Query: 528 DNVLEKTDREAKSKSDN-NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFV 586
           + ++ K  +      DN +  D    G   V  S GY++  +DV    AF+   +D    
Sbjct: 437 NEMVRKHFQAGHVCGDNMDLIDGQPTG--SVRISFGYMSTLDDVQ---AFLRFIIDTRLH 491

Query: 587 EKARW 591
               W
Sbjct: 492 SSGDW 496

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 119/558 (21%), Positives = 205/558 (36%), Gaps = 134/558 (24%)

Query: 71  PSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQES 130
           P+ Q+ L   T+     +    + ++R +E+ +L+ + +  LD+ G  LF  +QL     
Sbjct: 13  PAFQRHLEASTQRLAHGYGLRSMSELRDQEFGRLAGTVY--LDHAGATLFPQSQL----- 65

Query: 131 SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190
             ++    L       P       + N+ ++L H   E      ++ RI+   + +  DY
Sbjct: 66  --TNFTKDLMENVYGNP------HSQNITSKLTHDTVEQ-----VRYRILTHFHTTPEDY 112

Query: 191 VYDYESEAVEAMIRTSEK-------------------------RGARVMSAEFSWPRLRI 225
           +  + + +  A+   +E                           G R ++A  S   + +
Sbjct: 113 IVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSVVGMRKVAAAMSVTSIPV 172

Query: 226 NSEKLRKMVVSKGKKK-------KQRGLFVFPLHSRMTGARYPYLWMR---------IAQ 269
             E    M  ++GK         +   LF +P  S  +G RYP  W+          +  
Sbjct: 173 KPED---MWSAEGKDAGACDPDCQLPHLFCYPAQSNFSGTRYPLSWVEEVKSGRRSPVNA 229

Query: 270 ENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 329
              W +L+DA +          LS  + DF+  SFY+IFG  P+G G L V K   P+L 
Sbjct: 230 PGKWFVLLDAASY--VSTSPLDLSAHQADFIPISFYKIFGL-PTGLGALLVNKHVAPLLR 286

Query: 330 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 389
                G           +L  E                        F  P S     + +
Sbjct: 287 KGYFGG------GTAAAYLAGE-----------------------DFYVPRS---SVAER 314

Query: 390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINW 447
            E G IS +     D I  K+              G D ++ L  G+  I +    L+ +
Sbjct: 315 FEDGTISFL-----DVIALKH--------------GFDALEHLTGGMVNIQQHTFALVQY 355

Query: 448 LVNALMKLQHPNTEGNALVKIY------GPKIRFDRGPALAFNVFDWKREKIEPVLVQKL 501
             +AL  L++ N  G  +V+IY       P +   +GP + FNV D   + I    V K+
Sbjct: 356 THSALSSLRYLN--GAPVVRIYSDSEFSSPDV---QGPIINFNVLDDGGKIIGYSQVDKM 410

Query: 502 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN-NRKDKANLGITVVTAS 560
           A   NI L  G   ++    ++    D +++K  +      D+ +  D    G   V  S
Sbjct: 411 ASLYNIHLRTGCFCNLGACQRHLGLSDEMVKKHFQAGHVCGDDVDIIDGRPTG--SVRIS 468

Query: 561 LGYLANFEDVYRLWAFVA 578
            GY++  ED      F++
Sbjct: 469 FGYMSTLEDAQAFLRFIS 486

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9N0E7|MOCOS_BOVIN Molybdenum cofactor sulfurase OS=Bos taurus GN=MOCOS PE=2 SV=2

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 135/351 (38%), Gaps = 81/351 (23%)

Query: 246 LFVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACA-LGPKDMDSFGLSLV 295
           LF +P  S  +G RYP  W+           ++   W +L+DA A +G   +D   LS+ 
Sbjct: 198 LFCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVH 254

Query: 296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC 355
           + DF+  SFY+IFG  P+G G L V      +L      G  +           D+F   
Sbjct: 255 QADFVPISFYKIFG-FPTGLGALLVNNRLAALLRKTYFGGGTA-----AAYLAGDDF--- 305

Query: 356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNG 415
                      +E VA                 + E G IS +     D I  K+     
Sbjct: 306 --------YVPRESVAE----------------RFEDGTISFL-----DVIALKH----- 331

Query: 416 GGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY---- 469
                    G D ++ L  G+  I +    L  +   AL  L++PN  G  +V+IY    
Sbjct: 332 ---------GFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYPN--GAPVVQIYSDSD 380

Query: 470 --GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK 527
              P++   +GP ++FNV D     +    V K+A   NI +  G   +     ++    
Sbjct: 381 FSSPEV---QGPVISFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCFCNTGACQRHLGIS 437

Query: 528 DNVLEKTDREAKSKSDN-NRKDKANLGITVVTASLGYLANFEDVYRLWAFV 577
           D +++K  +      D+ +  D    G   V  S GY++  ED      F+
Sbjct: 438 DEMVKKHLQAGHVCGDDVDLIDGQPTG--SVRISFGYMSTLEDAQAFLRFI 486

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9UV64|MOCOS_EMENI Molybdenum cofactor sulfurase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hxB PE=2 SV=2

 Score = 63.2 bits (152), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 116/524 (22%), Positives = 202/524 (38%), Gaps = 113/524 (21%)

Query: 93  IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLH--------KQESSPSHLRPS--LPSQ 142
           +D IR +EY  L   + T LD+ G  L++ + +H            +P  +  S  L +Q
Sbjct: 19  VDVIREREYPLLK--DTTYLDHAGTTLYANSLIHSFGRDLTGNLYGNPHSMSASSQLSAQ 76

Query: 143 NLD------IPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYES 196
            +D      + FF+      +L   +      +G+     K + D L  S   + Y Y  
Sbjct: 77  RVDDIRLRALRFFNADPDEFDL---VFVANATAGI-----KLVADALQNSPQGFWYGYYV 128

Query: 197 EAVEAMIRTSE--KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR-GLFVFPLHS 253
           +A  +++   E  K G+R            +N +++   +   G ++++  GLF +P  S
Sbjct: 129 DAHTSLVGVRELAKMGSRCF----------VNEDEVDSWISGLGSRREESLGLFAYPAQS 178

Query: 254 RMTGARYPYLW---MRIAQEND---WHILIDACAL---GPKDMDSFGLSLVRPDFLICSF 304
            M G R P  W   +R  +EN     + L+DA +     P D+     +   PDF + SF
Sbjct: 179 NMNGRRVPMRWCEQIRAQKENADNMIYTLLDAASFVSTSPLDLSKIAAA---PDFTVLSF 235

Query: 305 YQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQT 362
           Y+IFG      G L V+KS+  +         G V ++      W   + SS     E  
Sbjct: 236 YKIFGF--PDLGALIVRKSSGDVFKHRKFFGGGTVDMVLTDGNPWHAKKQSSIHQSLEDG 293

Query: 363 SKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE 422
           +      +A  + F           G+L                                
Sbjct: 294 TLPFHSIIALDSAF--------ETHGRL-------------------------------- 313

Query: 423 CRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRFD----R 477
            R ++ V S          R L   L + +  L+H N  G  + ++Y  P   +D    +
Sbjct: 314 FRSMENVAS--------HTRFLAKRLRDRMNALKHYN--GTKVCQLYMSPNSSYDDASSQ 363

Query: 478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD-KYQKEKDNVLEKTDR 536
           GP LAFN+ + +   I    V++LA  +NI +  G+L +   +         ++L     
Sbjct: 364 GPILAFNLRNSRGMWIGKSEVERLASIKNIQIRSGTLCNPGGTALSLGWTGADMLRHFSA 423

Query: 537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF 580
             +   D++  D+   GI  +  SLG +++  DV    AF+ +F
Sbjct: 424 GMRCGDDHDIMDERPTGILRI--SLGAMSSLTDVDTFIAFLEEF 465

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 123/560 (21%), Positives = 210/560 (37%), Gaps = 118/560 (21%)

Query: 74  QQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLH---KQES 130
           +Q L EF   Y        ID+IRA E+ +L+  +   LD+ G  L+S +Q+    K  +
Sbjct: 8   EQFLKEFGSYYGYANSPKNIDEIRATEFKRLN--DTVYLDHAGATLYSESQMEAVFKDLN 65

Query: 131 SPSHLRP------SLPSQNLD-------IPFFSVSYKTGNLKTQLLHGGQESGLESAMKK 177
           S  +  P      SL ++++        + FF+ S +  +           SG  +A+K 
Sbjct: 66  STLYGNPHSQSTCSLATEDIVGKARQQVLSFFNASPREYSCIFT-------SGATAALKL 118

Query: 178 RIMDFLNISENDYVYDYESEAVEAMIRT-SEKRGA----------RVMSAEFSWPRLRIN 226
               F   S + ++Y  E+      IR  +  +GA           V  +E     L++ 
Sbjct: 119 VGETFPWSSNSSFMYSMENHNSVLGIREYALSKGAAAFAVDIEDTHVGESESPQSNLKLT 178

Query: 227 SEKLRKM----VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQEND---------- 272
              +++     V+ +G       LF FP     +G ++    ++I +E            
Sbjct: 179 QHHIQRRNEGGVLKEGMTGNTYNLFAFPSECNFSGRKFDPNLIKIIKEGSERILESSQYS 238

Query: 273 ---WHILIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 326
              W +LIDA   CA  P +     LS+ + DF++ SFY++FG  P+G G L V+K    
Sbjct: 239 RGCWLVLIDAAKGCATNPPN-----LSMFKADFVVFSFYKLFGY-PTGLGALIVRKDAAK 292

Query: 327 ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ 386
           ++     SG                             +    +A  + F        R+
Sbjct: 293 LMKKTYFSG----------------------------GTVTAAIADVDFFK-------RR 317

Query: 387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN 446
            G  E  E   +      +IQ                 G   ++ L  + I R    +  
Sbjct: 318 EGVEEFFEDGTISFLSITAIQH----------------GFKIINMLTTSSIFRHTTSIAA 361

Query: 447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADREN 506
           ++ N L+ L+H N  G  +  +YG  +  + GP ++FN+            V+KLA    
Sbjct: 362 YVRNKLLALKHEN--GEFVCTLYG-LLSSEMGPTVSFNMKRPDGTWYGYREVEKLATLAG 418

Query: 507 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN 566
           I L  G   +     KY       L  ++ EA     ++R          V  S GY++ 
Sbjct: 419 IQLRTGCFCNPGACAKYLGLSHLDL-LSNIEAGHVCWDDRDILHGKPTGAVRVSFGYMST 477

Query: 567 FEDVYRLWAFV-AQFLDADF 585
           FED  +   FV + F+ + F
Sbjct: 478 FEDAMKFVNFVESNFVISSF 497

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|A1CHL0|MOCOS_ASPCL Molybdenum cofactor sulfurase OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=hxB PE=3 SV=1

 Score = 60.1 bits (144), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 163/432 (37%), Gaps = 81/432 (18%)

Query: 173 SAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK 232
           +A  K + D +  S   + Y Y  +A  +++      GAR ++A+ +  R   + E++  
Sbjct: 108 TAAIKLVADAMRDSRQGFWYGYHVDAHTSLV------GARELAAKGN--RCFSSDEEVEG 159

Query: 233 MVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLWMRI------AQENDWHILIDACALGPK 285
            + S +    +   LF +P  S + G R P  W         A   + + L+DA +L   
Sbjct: 160 WIQSLREAGPESLNLFAYPAQSNLNGRRLPLSWCETIRRRSEAAGGNTYTLLDAASLVST 219

Query: 286 DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAK 343
                  +   PDF + SFY+IFG      G L V+KS   I         G V ++  +
Sbjct: 220 SPLDLSDAAAAPDFTVLSFYKIFGF--PDLGALIVRKSAGHIFEQRRFFGGGTVDMVLTR 277

Query: 344 KQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA 403
           +  W   + SS     E  +      +A  + F    +   R  G +E            
Sbjct: 278 EMQWHAKKQSSIHDRLEDGTLPFHSIIALDSAF----ATHRRLFGSMEN----------- 322

Query: 404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN 463
                                            +S   R L   L + L  L+H N  G 
Sbjct: 323 ---------------------------------VSSHTRFLAKRLYDKLAALKHSN--GE 347

Query: 464 ALVKIY-GPKIRFDR----GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHI 517
            + ++Y  P   +++    GP +AFN+ +     I    V++LA  +NI    GSL +  
Sbjct: 348 RVCQLYTNPFSDYNKAASQGPIIAFNLRNSHGAWIGKSEVERLATVKNIQFRSGSLCNPG 407

Query: 518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV 577
             S        ++L++     +   D++  D    G  V+  SLG + N  D+  +  FV
Sbjct: 408 GTSGSLGWTGADLLQQFSAGLRCGDDHDVMDGRPTG--VLRLSLGAMTNLADINTVIQFV 465

Query: 578 AQFLDADFVEKA 589
            +F    +VE+A
Sbjct: 466 EEF----YVERA 473

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|A1CX75|MOCOS_NEOFI Molybdenum cofactor sulfurase OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_107180 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 133/358 (37%), Gaps = 72/358 (20%)

Query: 246 LFVFPLHSRMTGARYPYLWMRIAQE------NDWHILIDACALGPKDMDSFGLSLVRPDF 299
           LF +P  S M G R P  W +  +        + + L+DA +L          +   PDF
Sbjct: 183 LFAYPAQSNMNGRRLPLSWCKKIRNQGETAGGNVYTLLDAASLVSTSTLDLSDAAAAPDF 242

Query: 300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCET 357
            + SFY+IFG      G L V+KS   I         G V ++  +   W   + SS   
Sbjct: 243 TVLSFYKIFGF--PDLGALIVRKSAGQIFEHRRYFGGGTVDMVLTRGLQWHAKKQSSIHD 300

Query: 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGG 417
             E  +    + +A  + F    +   R  G ++                          
Sbjct: 301 RLEDGTLPFHDIIALDSAF----ATHERLFGSMQN------------------------- 331

Query: 418 GSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRFD 476
                              IS   R L   L + L  L+H N  G  + ++Y  P+  ++
Sbjct: 332 -------------------ISSHTRFLAKRLYDRLNALRHFN--GQRVCELYKSPRSDYN 370

Query: 477 ----RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVL 531
               +GP +AFN+ + +   I    V++LA   NI +  GSL +    S        ++L
Sbjct: 371 QPSTQGPIIAFNLRNSQGSWIGKSEVERLAAMRNIQIRSGSLCNPGGTSGSLGWTGADLL 430

Query: 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKA 589
           ++     +   D++  D    G  V+  SLG + N ED+     FV +F    +VEK 
Sbjct: 431 QQFSAGLRCGDDHDVMDGRPTG--VLRLSLGAMTNLEDINTFVEFVEEF----YVEKV 482

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q0CLW8|MOCOS_ASPTN Molybdenum cofactor sulfurase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hxB PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 197/529 (37%), Gaps = 113/529 (21%)

Query: 93  IDQIRAKEYYQLSLSNHTCLDYFGIGL--------FSYNQLHKQESSPSHLRPS--LPSQ 142
           ID IR +EY  LS  + T LD+ G  L        FS +       +P  L  S    +Q
Sbjct: 22  IDAIRQREYPMLS--DTTYLDHAGTTLYAKSLIDSFSRDLTTNLFGNPHSLSASSQRTTQ 79

Query: 143 NLD------IPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYES 196
            +D      + FF+   +  +L   +      S +     K + D L  S + + Y Y  
Sbjct: 80  RVDDIRLRALRFFNADPEHFDL---VFVANATSAI-----KLVADALRDSAHGFWYGYHV 131

Query: 197 EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRM 255
           +A  +++      GAR ++   S  R     E++   +      +     LF FP  S M
Sbjct: 132 DAHTSLV------GARELAQAGS--RCFTTDEEVEAWIAQLDADRTGAAQLFAFPAQSNM 183

Query: 256 TGARYPYLWM-----RIAQENDWHILIDACAL---GPKDMDSFGLSLVRPDFLICSFYQI 307
            G R P  W      R  +    + L+DA +L    P D+     +    DF + SFY+I
Sbjct: 184 NGRRLPLRWCGRIRDRTKETATTYTLLDAASLVATSPLDLSDVSAA---SDFTVLSFYKI 240

Query: 308 FGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS 365
           FG      G L V+KS   I         G V ++  +   W                 +
Sbjct: 241 FGF--PDLGALIVRKSAGHIFAQRRFFGGGTVDMVLTQDTQW----------------HA 282

Query: 366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG 425
           K+  V            E+ + G L    I  +     DS    +A   G  G+      
Sbjct: 283 KKRSVH-----------EILEDGTLPFHNIIAL-----DSALDTHARLYGSMGN------ 320

Query: 426 LDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRF----DRGPA 480
                      +S   R L   L + L  L+H N  G  +V  Y G    F     +GP 
Sbjct: 321 -----------VSTHTRFLARTLYDRLAALRHFN--GERVVHFYMGRSPDFADASAQGPI 367

Query: 481 LAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVLEKTDREAK 539
           LAFN+   +   I    V++LA  +++ +  G+L +    + +      ++L       +
Sbjct: 368 LAFNLRSSQGGWIGKSEVERLASVKSLQIRSGTLCNPGGTASQLGWSGADMLRHFSAGLR 427

Query: 540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEK 588
              D++  D    GI  V  SLG ++N  DV    AFV +F    +VEK
Sbjct: 428 CGDDHDVMDGRPTGILRV--SLGAMSNLRDVEAFVAFVEEF----YVEK 470

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q4WPE6|MOCOS_ASPFU Molybdenum cofactor sulfurase OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=hxB PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 72/358 (20%)

Query: 246 LFVFPLHSRMTGARYPYLWMRIAQE------NDWHILIDACALGPKDMDSFGLSLVRPDF 299
           LF +P  S M G R P+ W +  ++       + + L+DA +L          +   PDF
Sbjct: 175 LFAYPAQSNMNGRRLPFSWCKKIRDQGETTGGNVYTLLDAASLVSTSPLDLSDASAAPDF 234

Query: 300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCET 357
            + SFY+IFG      G L V+KS   I         G V ++  +   W   + SS   
Sbjct: 235 TVLSFYKIFGF--PDLGALIVRKSAGQIFEHRRYFGGGTVDMVLTRGLQWHAKKQSSIHD 292

Query: 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGG 417
             E  +      +A  + F    +   R  G ++                          
Sbjct: 293 RLEDGTLPFHNIIALDSAF----ATHERLFGSMQN------------------------- 323

Query: 418 GSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRFD 476
                              IS   R L   L + L  L+H N  G  + ++Y  P+  ++
Sbjct: 324 -------------------ISSHTRFLAKRLYDRLNALRHFN--GQRVCELYKSPRSDYN 362

Query: 477 ----RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVL 531
               +GP +AFN+ + +   I    V++LA  +NI +  GSL +    S        ++L
Sbjct: 363 QPSTQGPIIAFNLRNSQGSWIGKSEVERLAATKNIQIRSGSLCNPGGTSGSLGWTGADLL 422

Query: 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKA 589
           ++     +   D++  D    G  V+  SLG + N ED+      V +F    +VEKA
Sbjct: 423 QQFSAGLRCGDDHDVMDGRPTG--VLRLSLGPMTNLEDINTFVELVEEF----YVEKA 474

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|B0Y691|MOCOS_ASPFC Molybdenum cofactor sulfurase OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=hxB PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 135/358 (37%), Gaps = 72/358 (20%)

Query: 246 LFVFPLHSRMTGARYPYLWMRIAQE------NDWHILIDACALGPKDMDSFGLSLVRPDF 299
           LF +P  S M G R P+ W +  ++       + + L+DA +L          +   PDF
Sbjct: 175 LFAYPAQSNMNGRRLPFSWCKKIRDQGETTGGNVYTLLDAASLVSTSPLDLSDASAAPDF 234

Query: 300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCET 357
            + SFY+IFG      G L V+KS   I         G V ++  +   W   + SS   
Sbjct: 235 TVLSFYKIFGF--PDLGALIVRKSAGQIFEHRRYFGGGTVDMVLTRGLQWHAKKQSSIHD 292

Query: 358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGG 417
             E  +      +A  + F    +   R  G ++                          
Sbjct: 293 RLEDGTLPFHNIIALDSAF----ATHERLFGSMQN------------------------- 323

Query: 418 GSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRFD 476
                              IS   R L   L + L  L+H N  G  + ++Y  P+  ++
Sbjct: 324 -------------------ISSHTRFLAKRLYDRLNALRHFN--GQRVCELYKSPRSDYN 362

Query: 477 ----RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVL 531
               +GP +AFN+ + +   I    V++LA  +NI +  GSL +    S        ++L
Sbjct: 363 QPSTQGPIIAFNLRNSQGSWIGKSEVERLAATKNIQIRSGSLCNPGGTSGSLGWTGADLL 422

Query: 532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKA 589
           ++     +   D++  D    G  V+  SLG + N ED+      V +F    +VEKA
Sbjct: 423 QQFSAGLRCGDDHDVMDGRPTG--VLRLSLGPMTNLEDINTFVELVEEF----YVEKA 474

Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form.

Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	603
224134691	645	predicted protein [Populus trichocarpa]	0.991	0.927	0.653	0.0
225469324	654	PREDICTED: uncharacterized protein LOC10	0.988	0.911	0.636	0.0
255539593	664	molybdopterin cofactor sulfurase, putati	0.981	0.891	0.619	0.0
356534167	649	PREDICTED: uncharacterized protein LOC10	0.986	0.916	0.587	0.0
357444119	643	Molybdenum cofactor sulfurase [Medicago	0.963	0.903	0.604	0.0
356574465	653	PREDICTED: uncharacterized protein LOC10	0.976	0.901	0.588	0.0
225426751	652	PREDICTED: uncharacterized protein LOC10	0.986	0.912	0.551	0.0
449451789	624	PREDICTED: molybdenum cofactor sulfurase	0.968	0.935	0.568	0.0
356529304	646	PREDICTED: molybdenum cofactor sulfurase	0.933	0.871	0.574	0.0
357500887	628	Molybdenum cofactor sulfurase [Medicago	0.941	0.904	0.560	0.0

>gi|224134691|ref|XP_002321884.1| predicted protein [Populus trichocarpa] gi|222868880|gb|EEF06011.1| predicted protein [Populus trichocarpa]

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/650 (65%), Positives = 492/650 (75%), Gaps = 52/650 (8%)

Query: 1   MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
           MQ  CL+EVSQACL    GCCPSP    S +PL+K+SK R+TSA CR++FA  T SSIFP
Sbjct: 1   MQPRCLKEVSQACL---SGCCPSPILGFS-EPLNKISKPRSTSATCRQNFAKTTTSSIFP 56

Query: 61  DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
           +T FTN ESLPSLQ+S   F + YPQY DTYQ+DQ RA+EY  L+LSNHTCLDY GIGLF
Sbjct: 57  NTHFTNPESLPSLQESFNGFIEVYPQYSDTYQVDQTRAQEYNHLALSNHTCLDYIGIGLF 116

Query: 121 SYNQLHKQESSPSHL-RPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI 179
           SY QL K +S    L   S P QN+ IPFFSVSYKTGNLKTQLLHGGQES LESAMKKRI
Sbjct: 117 SYAQLQKLDSEKQILPSASSPPQNMHIPFFSVSYKTGNLKTQLLHGGQESALESAMKKRI 176

Query: 180 MDFLNISENDY-----------------------------VYDYESEAVEAMIRTSEKRG 210
           M FLNISENDY                             VYDYESEAVEAMI +S+K+G
Sbjct: 177 MSFLNISENDYSMVFTANRTSAFKLLAESYPFKTSRKLLTVYDYESEAVEAMINSSDKKG 236

Query: 211 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK-QRGLFVFPLHSRMTGARYPYLWMRIAQ 269
           A+VMSAEFSWPRLRI S KLRKMV  K K+KK +RGLFVFPLHSRMTGARYPYLWM IA+
Sbjct: 237 AQVMSAEFSWPRLRIQSAKLRKMVEMKSKRKKTKRGLFVFPLHSRMTGARYPYLWMNIAK 296

Query: 270 ENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 329
           EN WHILIDACALGPKDMDSFGLSL+RPDFLICSFY+IFGENPSGFGCLFVKKSTVP+L 
Sbjct: 297 ENGWHILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLFVKKSTVPLLE 356

Query: 330 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK--SKQEKVAATNTFSGPMSIEMRQS 387
           D+ S+GMVSL+PA K   L DEFS  +++ E  SK   +++++ ++N+FSGP+S +   S
Sbjct: 357 DSVSAGMVSLVPANKMFRLVDEFSGTDSDFEHLSKLGLQEDELDSSNSFSGPISSQTMHS 416

Query: 388 GKLEQGEISEVRRAEADSIQQKNANTNG--------------GGGSEIECRGLDQVDSLG 433
           G++EQGE SE  +    + +QK + T+                G  EIECRGLDQVDSLG
Sbjct: 417 GRVEQGETSE-SQTTGTTAKQKVSKTSDIVESGKSAEVMRQENGILEIECRGLDQVDSLG 475

Query: 434 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI 493
           LT IS R RCLINW+VNAL+KL+HPNT    LV+IYGP+++FDRGPALAFN+FDWK EK+
Sbjct: 476 LTRISNRARCLINWMVNALLKLKHPNTGEIPLVRIYGPRVKFDRGPALAFNLFDWKGEKV 535

Query: 494 EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG 553
           E  LVQKLADR NISLSYG LHHI FSD+Y++EK  VLEK    AK    N RK+KA+ G
Sbjct: 536 EAPLVQKLADRSNISLSYGFLHHISFSDEYEEEKATVLEKRVNGAKGTVTNKRKEKADFG 595

Query: 554 ITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           ITVVT +LG LANFED YR WAF+AQFLDADFVEKA+WRYTAL+QKT+EV
Sbjct: 596 ITVVTVALGVLANFEDTYRFWAFIAQFLDADFVEKAKWRYTALNQKTVEV 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469324|ref|XP_002267983.1| PREDICTED: uncharacterized protein LOC100248586 [Vitis vinifera]

 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/661 (63%), Positives = 494/661 (74%), Gaps = 65/661 (9%)

Query: 1   MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
           M S C  + +Q CL    GCCP P     P+P  KV  SR+T+ADCRRDFAA TA+  FP
Sbjct: 1   MHSLCSGDATQVCL---HGCCPRPV--PLPEPQKKVPSSRSTAADCRRDFAATTAACFFP 55

Query: 61  DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
           +TQFTNHESLPSLQ+S T F +AYPQY +T Q D+IRA+EY+ L LSNH CLDY GIGLF
Sbjct: 56  NTQFTNHESLPSLQESFTLFEEAYPQYSETDQADRIRAQEYHHLLLSNHICLDYIGIGLF 115

Query: 121 SYNQLHKQESSPSHL----RPS-LPS-QNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174
           S+ Q+  + SSP+ +     PS LPS Q+ +IP F +SYK+ NLK+ L +GGQES LESA
Sbjct: 116 SHCQIQIKTSSPTTIASTSSPSNLPSPQSSNIPLFGISYKSVNLKSLLQYGGQESALESA 175

Query: 175 MKKRIMDFLNISENDY-----------------------------VYDYESEAVEAMIRT 205
           MK++IM FLNISENDY                             VYDYESEAVEAM+ T
Sbjct: 176 MKRKIMGFLNISENDYCMVFTANRTSAFKLLAESYPFQSSQKLLTVYDYESEAVEAMVET 235

Query: 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM 265
           SEKRGARVMSAEFSWPRLR+NS KLRKMVV + KKKK RGLFVFPL SRMTGARY YLWM
Sbjct: 236 SEKRGARVMSAEFSWPRLRVNSGKLRKMVV-RNKKKKNRGLFVFPLQSRMTGARYHYLWM 294

Query: 266 RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV 325
            IAQEN WH+L+DACALGPKDMD+FGLSL RPDFLICSFY++FGENP+GFGCLFVKKSTV
Sbjct: 295 NIAQENGWHVLLDACALGPKDMDTFGLSLFRPDFLICSFYKVFGENPTGFGCLFVKKSTV 354

Query: 326 PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK-QEKVAATNTFSGPMSIEM 384
           PIL  +TS+G+V+L+PAKK  WL  + S  +TEPEQTSK + QE++  +++FSGP+SI+ 
Sbjct: 355 PILEASTSTGIVNLVPAKKLFWLPADSSGTDTEPEQTSKFEFQEELHTSSSFSGPLSIQK 414

Query: 385 RQSGKL--EQGEISEVRRAE-------------------ADSIQQKNANTNGGGGSEIEC 423
             SG+   EQGE SE+ + E                   AD +QQ N    G  G EIEC
Sbjct: 415 TLSGRFEYEQGETSELPKTEGTAKHDRPETSKVIEMEKPADFVQQ-NTKVRGKEGLEIEC 473

Query: 424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT-EGNALVKIYGPKIRFDRGPALA 482
           RGLD VDSLGL +ISRR R LINWLVNAL KL HPNT EG+ LV+IYGP I+F+RGPALA
Sbjct: 474 RGLDHVDSLGLVLISRRARYLINWLVNALTKLHHPNTEEGSPLVRIYGPNIKFERGPALA 533

Query: 483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS 542
           FNVFDWK EK+EP+L+QKLADR NISLSYG LHH+WFSDKY+ EK  V+E+ + EAK  +
Sbjct: 534 FNVFDWKGEKVEPILLQKLADRSNISLSYGFLHHLWFSDKYEAEKQRVIERRETEAKGMA 593

Query: 543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIE 602
            N RK K +LGITVVTA+LG+L NFED+YRLWAFVAQFLDADFVEK RWRYTAL+QKTIE
Sbjct: 594 QNKRKGKDDLGITVVTAALGFLTNFEDIYRLWAFVAQFLDADFVEKERWRYTALNQKTIE 653

Query: 603 V 603
           V
Sbjct: 654 V 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539593|ref|XP_002510861.1| molybdopterin cofactor sulfurase, putative [Ricinus communis] gi|223549976|gb|EEF51463.1| molybdopterin cofactor sulfurase, putative [Ricinus communis]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/675 (61%), Positives = 486/675 (72%), Gaps = 83/675 (12%)

Query: 1   MQSPCLREVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFP 60
           MQSPCL+E SQ CL    GCCPSP     P+P  K+  +R+T+A CR +FAA   SSIFP
Sbjct: 1   MQSPCLKEASQVCL---HGCCPSPLLGF-PEPRKKLGNNRSTAATCRHNFAATATSSIFP 56

Query: 61  DTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLF 120
           +TQFTN ESLP+LQ+S TEF+K YP+Y D+YQ+DQIRA+EYYQLSLS+HTCLDY GIGLF
Sbjct: 57  NTQFTNPESLPTLQESFTEFSKVYPRYSDSYQVDQIRAQEYYQLSLSHHTCLDYIGIGLF 116

Query: 121 SYNQLH-----KQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAM 175
           SY QL      K+  S S   P  P +N   PFFSVSYKTGNLKTQLLHGGQES LES +
Sbjct: 117 SYAQLQNHDCRKKIVSSSCPPPHSPPKNSHFPFFSVSYKTGNLKTQLLHGGQESELESTI 176

Query: 176 KKRIMDFLNISENDY-----------------------------VYDYESEAVEAMIRTS 206
           KKRIM FLN+SEN+Y                             VYDYESEAVE MI  S
Sbjct: 177 KKRIMSFLNLSENEYSMVFTSNRTSAFKLVAESYPFHSSRKLLTVYDYESEAVETMINCS 236

Query: 207 EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR 266
           E +GA+VM AEFSWPRLRI+S KLRKM++ K KKKK+RGLFVFPLHSR++GARYPY+WM 
Sbjct: 237 ENKGAQVMPAEFSWPRLRIHSAKLRKMIMRKRKKKKKRGLFVFPLHSRVSGARYPYIWMS 296

Query: 267 IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP 326
           IAQEN WHILIDACALGPKDMDSFGLSL+RPDFLICSFY+IFGENPSGFGCLFVKKSTVP
Sbjct: 297 IAQENGWHILIDACALGPKDMDSFGLSLIRPDFLICSFYKIFGENPSGFGCLFVKKSTVP 356

Query: 327 ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK--SKQEKVAATNTFSGPMSIEM 384
           +L D   +GMV+L+PAKK  W  DE S  +TE E  SK   +++++  +N+FSGP+SI  
Sbjct: 357 LLEDTACAGMVNLIPAKKLFWFLDESSGTDTEIEHMSKFEIEEDELDTSNSFSGPISISK 416

Query: 385 RQSGKLEQGEISE------------VRRAEADSIQQKNANTNGG---------------- 416
            QSG ++QGE SE             +  E ++ QQ+   T G                 
Sbjct: 417 LQSG-IQQGETSEPQTGVTTREQKVSQTGEPETAQQQELETTGAAAKQKELETSQNDKVK 475

Query: 417 --------GGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI 468
                   G  EIECRGLD+VD LGLT IS R RCLINWLVNALMKL+HPN E   LV+I
Sbjct: 476 KTINSSRNGTMEIECRGLDEVDLLGLTQISNRARCLINWLVNALMKLKHPNNEEVPLVRI 535

Query: 469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD 528
           YGPKIRFDRGPA+AFNVFDWK EK++  LVQKLADR NISLSY  LHHI FS+KY++E+ 
Sbjct: 536 YGPKIRFDRGPAMAFNVFDWKGEKVDAPLVQKLADRSNISLSYAFLHHISFSEKYEEERA 595

Query: 529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEK 588
            +LE      +  S  NRK K NLGITVVT +LG+LANFED YRLWAF+AQFLDADFVEK
Sbjct: 596 TLLE------RKASGVNRKQKENLGITVVTVALGFLANFEDTYRLWAFIAQFLDADFVEK 649

Query: 589 ARWRYTALDQKTIEV 603
           A+WRYTAL+QKTIEV
Sbjct: 650 AKWRYTALNQKTIEV 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534167|ref|XP_003535629.1| PREDICTED: uncharacterized protein LOC100814630 [Glycine max]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/657 (58%), Positives = 473/657 (71%), Gaps = 62/657 (9%)

Query: 1   MQSPCLREVSQACLCTHGGCCPSPFF----SLSPDPLHKVSKSRNTSADCRRDFAAVTAS 56
           MQS    E S AC     GCCP+          P   +  +K RN+SA+CR  FAA TAS
Sbjct: 1   MQSLGQNEASLAC---PQGCCPTSLLFNPPPPPPQSQNTTAKPRNSSAECRHSFAATTAS 57

Query: 57  SIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFG 116
           SIFP+T+FTNHESLPSL +S +EF K YPQY +T Q+D +RAKEYY LS SN +CLDY G
Sbjct: 58  SIFPNTKFTNHESLPSLHESFSEFKKVYPQYSETDQVDHVRAKEYYHLSFSNQSCLDYIG 117

Query: 117 IGLFSYNQL-HKQESSPSHL-RPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA 174
           IGLFSY Q  H  ++S + L   S P  + +IPFFS+SYKTGNLKT LLHGGQES  ESA
Sbjct: 118 IGLFSYYQRQHHHDTSKTQLASSSTPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESA 177

Query: 175 MKKRIMDFLNISENDY-----------------------------VYDYESEAVEAMIRT 205
           M++RIM FLNIS+NDY                             VYDYESEAVEAMI  
Sbjct: 178 MRRRIMKFLNISDNDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISC 237

Query: 206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLW 264
           SEKRGA+ MSAEFSWPRLRI S KLRK++VS + K KK+RGLFVFPLHSR+TGARY YLW
Sbjct: 238 SEKRGAKAMSAEFSWPRLRIRSTKLRKIIVSKRKKNKKKRGLFVFPLHSRVTGARYAYLW 297

Query: 265 MRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST 324
           M IAQEN WH+L+DACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS 
Sbjct: 298 MSIAQENGWHVLLDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSA 357

Query: 325 VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 384
           +  L  ++ +G+V+L+P +  L  +++  S + +P   S  +++++++ ++FSG   I+ 
Sbjct: 358 ISTLESSSCAGIVNLVPERLLLQPSEDKHSSKQKP--LSILQEQELSSLSSFSG--RIQT 413

Query: 385 RQSGKLEQGEISEVR-----------------RAEADSIQQKNANTNG-GGGSEIECRGL 426
            Q+ K+EQ E+SE++                 +   +S+Q K A  +G  GG  IECR L
Sbjct: 414 SQAIKVEQ-ELSELQIIAAPAKPKEGSGSVEAKGPVESLQSKKAQDSGENGGFNIECRCL 472

Query: 427 DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF 486
           DQVDSLGL MI+ R R LINWLVN++MKL+HPN EG  LVKIYGPK++FDRGPALAFNVF
Sbjct: 473 DQVDSLGLIMITNRTRYLINWLVNSMMKLKHPNAEGVPLVKIYGPKVKFDRGPALAFNVF 532

Query: 487 DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 546
           DWK EK+EPVLVQKLADR NISLSYG LHHIWF+DKY ++K  VL+  +   +  + N +
Sbjct: 533 DWKGEKVEPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVTTNKK 592

Query: 547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           KD+  LG+TVVTA+L +LANFEDVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 593 KDRDELGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 649

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444119|ref|XP_003592337.1| Molybdenum cofactor sulfurase [Medicago truncatula] gi|355481385|gb|AES62588.1| Molybdenum cofactor sulfurase [Medicago truncatula]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/635 (60%), Positives = 457/635 (71%), Gaps = 54/635 (8%)

Query: 19  GCCPSPFFSLSPDPLHK--VSKSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQS 76
           GCCP+  F  S    H    +K RN+S+ CR+ FA+ T+SSIFP+T+FTNHESLPSL +S
Sbjct: 13  GCCPTLLFIKSSQQSHNNSTTKPRNSSSHCRQTFAS-TSSSIFPNTKFTNHESLPSLHES 71

Query: 77  LTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHK------QES 130
            TEF K YPQ+ +T +ID +RAKEYY LS  N +CLDY GIGLFSY Q  +      Q S
Sbjct: 72  FTEFIKVYPQFSETEKIDSLRAKEYYHLSFLNQSCLDYIGIGLFSYYQRQQHDASKTQFS 131

Query: 131 SPSHLRP-SLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND 189
           SPS   P   P Q  DIPFFS+SYKTGNLKT LLHGG+ES  ESAM+KRIM FLNISEND
Sbjct: 132 SPSTSTPFQSPQQYSDIPFFSISYKTGNLKTLLLHGGKESEFESAMRKRIMKFLNISEND 191

Query: 190 Y-----------------------------VYDYESEAVEAMIRTSEKRGARVMSAEFSW 220
           Y                             VYDYESEAVEAMI TSE RGA+ MSAEFSW
Sbjct: 192 YFMVFTANRTSAFKLVADSYPFQSCKKLLTVYDYESEAVEAMISTSENRGAKSMSAEFSW 251

Query: 221 PRLRINSEKLRKMVVSKGK---KKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILI 277
           PRLRI S KL+KM+VS       KK+ GLFVFPLHSR+TGARYPYLWMR AQEN WH+LI
Sbjct: 252 PRLRIQSTKLKKMIVSDNSKKKIKKKNGLFVFPLHSRVTGARYPYLWMRTAQENGWHVLI 311

Query: 278 DACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMV 337
           DACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS++ IL  +T +G+V
Sbjct: 312 DACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSSISILESSTCAGIV 371

Query: 338 SLLPAKKQLWLTDEFSSCETEPEQTSKS----KQEKVAATNTFSG----PMSIEMRQSGK 389
           +L+P   Q  L+++ SSC  +     KS    ++++++A ++FSG    P  +++    K
Sbjct: 372 NLVPESTQFNLSED-SSCNNQVGIGQKSPSILQEQELSALSSFSGRMQTPQFVKVEADPK 430

Query: 390 LEQG-EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL 448
              G E  E R  E +  Q K    +      IECR LDQVDSLGLT+I+ RGR LINWL
Sbjct: 431 APLGSETMEARVVENN--QVKTVQDSKNESFNIECRCLDQVDSLGLTLITNRGRYLINWL 488

Query: 449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENIS 508
           VN+L+KL+HPN EG  LVKIYGPKIRFDRGPALAFNV+DWK EK+EPVLVQKLADR NIS
Sbjct: 489 VNSLLKLKHPNDEGVPLVKIYGPKIRFDRGPALAFNVYDWKGEKVEPVLVQKLADRNNIS 548

Query: 509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFE 568
           LSYG LHHIWF+DKY + K  VL+  +   +    N +KD+ +LG+TVVTA+L +LANFE
Sbjct: 549 LSYGFLHHIWFADKYSEGKGRVLQTKEGRGEKVMVNKKKDRDDLGVTVVTAALSFLANFE 608

Query: 569 DVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           DVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 609 DVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 643

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574465|ref|XP_003555367.1| PREDICTED: uncharacterized protein LOC100820534 [Glycine max]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/652 (58%), Positives = 469/652 (71%), Gaps = 63/652 (9%)

Query: 10  SQACLCTHGGCCPSPFF-----SLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQF 64
           ++A L    GCCP+               +  +K RN+SA+CR  FAA TASSIFP+T+F
Sbjct: 7   NEASLACPHGCCPTSLLFNPPPPPPLQTQNTTTKPRNSSAECRHSFAATTASSIFPNTKF 66

Query: 65  TNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQ 124
           TNHESLPSL +S +EF K YPQY +T Q+D +R KEYY LS SN +CLDY GIGLFSY Q
Sbjct: 67  TNHESLPSLHESFSEFKKVYPQYSETDQVDHVRDKEYYHLSFSNQSCLDYIGIGLFSYYQ 126

Query: 125 L-HKQESSPSHLRPSLPSQNL-----DIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR 178
             H  ++S + L  S    +      +IPFFS+SYKTGNLKT LLHGGQES  ESAM++R
Sbjct: 127 RQHHHDTSKTQLASSSTPPSPPQYSDNIPFFSISYKTGNLKTLLLHGGQESEFESAMRRR 186

Query: 179 IMDFLNISENDY-----------------------------VYDYESEAVEAMIRTSEKR 209
           IM FLNISENDY                             VYDYESEAVEAMI  SE+R
Sbjct: 187 IMKFLNISENDYFMVFTANRTSAFKLVADSYPFQSSKKLLTVYDYESEAVEAMISCSERR 246

Query: 210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQ 269
           GA+ MSAEFSWPRLRI S KLRKM+VSK KKKK+RGLFVFPLHSR+TGARYPYLWM IAQ
Sbjct: 247 GAKAMSAEFSWPRLRIQSTKLRKMIVSKRKKKKKRGLFVFPLHSRVTGARYPYLWMSIAQ 306

Query: 270 ENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV 329
           EN WH+LIDACALGPKDMDSFGLSL +PDFLICSFY++FGENPSGFGCLFVKKS +  L 
Sbjct: 307 ENGWHVLIDACALGPKDMDSFGLSLFQPDFLICSFYKVFGENPSGFGCLFVKKSAITTLE 366

Query: 330 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK 389
            ++ +G+V+L+P +  L  +++  S + +P   S  +++ +++ ++FSG   I+  Q+ K
Sbjct: 367 SSSCAGIVNLVPDRLLLHPSEDKDSSKQKP--LSILQEQDLSSLSSFSG--RIQTSQAIK 422

Query: 390 LEQGEISEVR-------------RAEA----DSIQQKNA-NTNGGGGSEIECRGLDQVDS 431
           +EQ E+SE++             R EA    +S+Q K A + +  GG  I+CR LDQVDS
Sbjct: 423 VEQ-ELSELQIIAAPAKPKQGSGRVEAKGPVESLQSKKAQDGSENGGFNIDCRCLDQVDS 481

Query: 432 LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE 491
           LGL MI+ R R LINWLVN++MKL+HPN EG  LVKIYGPK++FDRGPALAFNVFDWK E
Sbjct: 482 LGLIMITNRTRYLINWLVNSMMKLKHPNAEGVPLVKIYGPKVKFDRGPALAFNVFDWKGE 541

Query: 492 KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN 551
           K+EPVLVQKLADR NISLSYG LHHIWF+DKY ++K  VL+  +   +    N +KD+  
Sbjct: 542 KVEPVLVQKLADRNNISLSYGFLHHIWFADKYAEDKGKVLQTKEGRVQGVITNKKKDRDK 601

Query: 552 LGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           LG+TVVTA+L +LANFEDVY+LW FVA+FLDADFVEK RWRYTAL+QKTIEV
Sbjct: 602 LGVTVVTAALSFLANFEDVYKLWTFVARFLDADFVEKERWRYTALNQKTIEV 653

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426751|ref|XP_002275855.1| PREDICTED: uncharacterized protein LOC100265017 [Vitis vinifera]

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/660 (55%), Positives = 461/660 (69%), Gaps = 65/660 (9%)

Query: 1   MQSPCLREVSQACLCTHGGCCPS--PFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSI 58
           M SPC+RE S+AC     GCC +  P F   PDP     K+ +++A  R +FA  T SS+
Sbjct: 1   MHSPCIRETSEACF---QGCCLASLPGF---PDPHGTDPKNLSSAAVSRYNFALTTVSSL 54

Query: 59  FPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIG 118
           FP+TQFTNHESLP L +S + F KAYPQY +T Q DQIRA+EYY LS+SNH CLDY G G
Sbjct: 55  FPNTQFTNHESLPPLDESFSSFNKAYPQYSNTNQADQIRAQEYYHLSMSNHVCLDYIGHG 114

Query: 119 LFSYNQLHKQESSPSHLRPS------LPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE 172
           LFSY+QL     +      S      L   +L++PFF +SYK+ NL +Q+L+GG+ES LE
Sbjct: 115 LFSYSQLQSHHMTAPVPSSSSSSAPSLNFSSLELPFFEISYKSVNLNSQILYGGEESELE 174

Query: 173 SAMKKRIMDFLNISENDY-----------------------------VYDYESEAVEAMI 203
           S ++KRIMDF+NISE DY                             VYDYE+EAV AMI
Sbjct: 175 SKIRKRIMDFMNISEADYSMVFTANQSSAFKLLADFYPFQSNQNLLTVYDYENEAVGAMI 234

Query: 204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL 263
           R S+KR ARV+SAEFSWP LRI+S KL+K++++K  +KK+RGLFVFPL SRMTGARY YL
Sbjct: 235 RASKKRSARVLSAEFSWPNLRIHSAKLKKIILNK--RKKRRGLFVFPLQSRMTGARYSYL 292

Query: 264 WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS 323
           WM +AQEN WH+L+DACALGPKDM++ GLSL RPDFLICSF+++FG+NPSGFGCLFVKKS
Sbjct: 293 WMSMAQENGWHVLLDACALGPKDMETLGLSLFRPDFLICSFFKVFGKNPSGFGCLFVKKS 352

Query: 324 TVPILVDNTSS---GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK--VAATNTFSG 378
           +  IL D+T++   G+VSLLPA ++    DE ++ + E EQTSK K  K  + A ++ SG
Sbjct: 353 SASILKDSTTAVSVGIVSLLPATRRSQFPDESATTDIETEQTSKLKLHKGELPAASSLSG 412

Query: 379 PMSIEMRQSGKLEQGEISEVRRAEA--------------DSIQQKNANTNGGGGSEIECR 424
           P+ ++   +   E  EIS+V   +               D  Q  N +++  G S+IECR
Sbjct: 413 PLPVQKISNETFESYEISDVNFKQKGSSSSEIVELEMPLDIPQSLNKDSSVNGYSQIECR 472

Query: 425 GLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE-GNALVKIYGPKIRFDRGPALAF 483
           GLD  DSLGL +IS R R LINWLVNALM L+HP++E G  LV+IYGP + FDRGPA+AF
Sbjct: 473 GLDHADSLGLILISLRARFLINWLVNALMSLRHPHSENGLPLVRIYGPNVAFDRGPAVAF 532

Query: 484 NVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD 543
           NVFDWK EK+EP LVQKLADR NISLS+G L HIWFSDKY++EK+ +LE      +    
Sbjct: 533 NVFDWKGEKVEPTLVQKLADRSNISLSHGFLQHIWFSDKYEEEKEKILELRTIGVEGTLG 592

Query: 544 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           N ++DK++ GI+VV+A+LG L NFEDVY LWAFV++FLDADFVEK RWRY AL+QKT+EV
Sbjct: 593 NKKRDKSSSGISVVSAALGLLTNFEDVYNLWAFVSRFLDADFVEKERWRYVALNQKTVEV 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451789|ref|XP_004143643.1| PREDICTED: molybdenum cofactor sulfurase-like [Cucumis sativus]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/637 (56%), Positives = 453/637 (71%), Gaps = 53/637 (8%)

Query: 1   MQSPCLREVSQACLCTHGGCC---PSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASS 57
           M SPCL E+S AC    GG     P+P  +  P      + +  TSA  RRDFAA  ++ 
Sbjct: 1   MPSPCLTEISAACGGGSGGGSSCCPTPLLNF-PSSQPSTTATPRTSAASRRDFAAKASAG 59

Query: 58  IFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGI 117
           +FP+T FTN E LPS  Q+L+ F  A+PQY  T +ID IR ++YY L+LSNH CLDY GI
Sbjct: 60  VFPNTTFTNPECLPSPPQALSLFLAAFPQYSQTQEIDAIRNRQYYHLNLSNHICLDYIGI 119

Query: 118 GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKK 177
           GLFSY+Q  K      H  P  PS NL+ PFF VSY+TGNLK++LL  G +S LESA+K+
Sbjct: 120 GLFSYHQFQK------HSNP-FPSSNLNFPFFGVSYRTGNLKSRLLENGLDSDLESAIKR 172

Query: 178 RIMDFLNISENDY-----------------------------VYDYESEAVEAMIRTSEK 208
           RI  FLN+SE+DY                             VYDYESEAVEAM+ +S+ 
Sbjct: 173 RIFRFLNVSESDYAMIFTANRTSAFKLLAESYPFQTSNKVLTVYDYESEAVEAMVSSSQN 232

Query: 209 RGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQRGLFVFPLHSRMTGARYPYLWMRI 267
           RGA  MSAEFSWPRLRINS KL++M+VS   KKK ++GLFVFPLHSR+TGARYPYLWM I
Sbjct: 233 RGATTMSAEFSWPRLRINSRKLKEMIVSKNKKKKTKKGLFVFPLHSRITGARYPYLWMSI 292

Query: 268 AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPI 327
           AQEN WH+L+DACALGPKDMD FGLSL RPDFL+ SFY++FGENPSGFGCL VKKS + I
Sbjct: 293 AQENRWHVLVDACALGPKDMDCFGLSLFRPDFLVSSFYKVFGENPSGFGCLLVKKSVISI 352

Query: 328 LVDNTSS---GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM 384
           L  N+SS   G+V+L+PA K L L ++ S  + + E     +Q+ V +T++FSGP+S ++
Sbjct: 353 LETNSSSSNVGIVNLVPADKLLQLNEDSSGTDIDLE---FQQQQMVPSTSSFSGPISHQI 409

Query: 385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL 444
            ++      E+ E  ++ ++  + +  +       E +C+GLDQVDSLGL +IS R RCL
Sbjct: 410 SKTTTTNFPEMDEEGKSRSNVSEIEIVSNR----YETKCKGLDQVDSLGLVLISTRARCL 465

Query: 445 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR 504
           INWLV++L+KL+HPN++G  LVKIYGPK++FDRGPALAFNVFDWK EK+EPVLVQKLADR
Sbjct: 466 INWLVSSLLKLKHPNSQGVCLVKIYGPKVKFDRGPALAFNVFDWKGEKVEPVLVQKLADR 525

Query: 505 ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL 564
            NISLSYG LH+I FSDKY +EK  VLE+  +E      N +K K NLGI+VVTA+LG+L
Sbjct: 526 SNISLSYGFLHNICFSDKYGEEKGKVLER--KEFGKDEKNMKKSKGNLGISVVTAALGFL 583

Query: 565 ANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTI 601
            NFEDVY+LW+FVAQFLDADFVEK RWRYTAL+Q+TI
Sbjct: 584 TNFEDVYKLWSFVAQFLDADFVEKERWRYTALNQRTI 620

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529304|ref|XP_003533235.1| PREDICTED: molybdenum cofactor sulfurase-like [Glycine max]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/613 (57%), Positives = 437/613 (71%), Gaps = 50/613 (8%)

Query: 38  KSRNTSADCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIR 97
           K RN+SA+ R  FA  T SSIFP+TQFTNHESLPSL +S  EFTKAY QY +T Q+D +R
Sbjct: 37  KIRNSSAEWRHSFAVTTTSSIFPNTQFTNHESLPSLHESFNEFTKAYTQYSETEQVDHVR 96

Query: 98  AKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESS----PSHLRPSLPSQNLDIPFFSVSY 153
           AK+Y  LSLSN TCLDY GIGLFSY+QL   E+S    PS   P  P    DIPFFS+S 
Sbjct: 97  AKDYSHLSLSNQTCLDYIGIGLFSYSQLQHHETSKGQVPSSSIPQTPPNYSDIPFFSLSC 156

Query: 154 KTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY----------------------- 190
           KTG+LKT LLHGGQ++  E+AM+KRIM FLN+SENDY                       
Sbjct: 157 KTGSLKTLLLHGGQDTEFEAAMRKRIMSFLNVSENDYFMVFTANRTSAFKLVADSYQFQT 216

Query: 191 ------VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS-KGKKKKQ 243
                 VYDYESEAVE MI +SEKRGAR MSAEFSWPRLRI + KLRKM+ S + KKKK+
Sbjct: 217 SRRLLTVYDYESEAVEVMISSSEKRGARAMSAEFSWPRLRIQTTKLRKMIESKRKKKKKR 276

Query: 244 RGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS 303
           +GLFV PL SR+TGA+YPYLWM IAQE  WH+L+DACALGPKDMD FGLSL +PDFLICS
Sbjct: 277 KGLFVLPLSSRVTGAKYPYLWMSIAQEIGWHVLVDACALGPKDMDCFGLSLFQPDFLICS 336

Query: 304 FYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS 363
           FY++FGENPSGFGCLF+KKS +  L    S+G+V+L+P K+   L+D+ S  + E +   
Sbjct: 337 FYKVFGENPSGFGCLFIKKSAISSLESYPSAGIVNLVPEKQPHQLSDDSSGTDLELKNKP 396

Query: 364 KS---KQEKVAATNTFSGPMSIEMRQSGKLEQGE----------ISEVRRAEADSIQQKN 410
                 +EK+   + FSGPM  + +QS  +E+GE           SE+   + +++Q   
Sbjct: 397 SPACLHEEKLFPLSYFSGPM--QTKQSEIVEEGEPPDSKLKAPQCSEIEEVQQEAVQNLK 454

Query: 411 ANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG 470
            ++     ++I+CR LDQVDSLGL +I+ R R LINWLVN++ KL+HPNT+G  LVKIYG
Sbjct: 455 KSSK-VEETDIQCRCLDQVDSLGLILITNRSRYLINWLVNSMRKLKHPNTQGVHLVKIYG 513

Query: 471 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV 530
           PK++FDRGPALAFN++DWK E++EP LVQKLADR NIS+SY  LHHIWF+DKY +EK  V
Sbjct: 514 PKVKFDRGPALAFNIYDWKGERVEPALVQKLADRSNISISYAFLHHIWFADKYAEEKGKV 573

Query: 531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKAR 590
           L+      +         K ++GI+VVTA+LG+LANFEDVY+LWAFVA+FLDADFVEK R
Sbjct: 574 LQTKVVGGQEGVMTTTNKKDSVGISVVTAALGFLANFEDVYKLWAFVARFLDADFVEKER 633

Query: 591 WRYTALDQKTIEV 603
           WRY A++QK +EV
Sbjct: 634 WRYIAINQKIVEV 646

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500887|ref|XP_003620732.1| Molybdenum cofactor sulfurase [Medicago truncatula] gi|355495747|gb|AES76950.1| Molybdenum cofactor sulfurase [Medicago truncatula]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/649 (56%), Positives = 447/649 (68%), Gaps = 81/649 (12%)

Query: 8   EVSQACLCTHGGCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIFPDTQFTNH 67
           E SQ C   H  CC    F+ SP+  +   K RN+S++CRR FA+ T SS+FP+T FTNH
Sbjct: 8   ETSQTC--PHQCCCNVSIFN-SPNSQNTKPKHRNSSSECRRTFASSTTSSVFPNTHFTNH 64

Query: 68  ESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHK 127
           ESLPS Q+S  EF K YPQY +T ++D +R KEY  LS SNHTCLDY GIGLFSY+Q+ +
Sbjct: 65  ESLPSFQESFNEFNKVYPQYSETEKVDHVRDKEYSHLSFSNHTCLDYIGIGLFSYSQMQQ 124

Query: 128 ----QESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL 183
                +S+    + SLP Q  D+PFFS+S KTGNLKT LLHGG++S  ESAM+KRIM++L
Sbjct: 125 YHDTSKSTHRKTQESLP-QFSDMPFFSISCKTGNLKTLLLHGGKDSEFESAMRKRIMNYL 183

Query: 184 NISENDY-----------------------------VYDYESEAVEAMIRTSEKRGARVM 214
           NISENDY                             VYD+ESEAVEAMI +SEKRGA+ M
Sbjct: 184 NISENDYFMVFTANRTSAFKLVADCYNFQKSRKLLTVYDHESEAVEAMISSSEKRGAKAM 243

Query: 215 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWH 274
           SAEFSWPRLRI S KLRKM+VSK KKKK +GLFV PLHSR+TGARYPY+W+ IA+EN W+
Sbjct: 244 SAEFSWPRLRIQSTKLRKMIVSKRKKKKNKGLFVLPLHSRVTGARYPYIWISIAKENGWN 303

Query: 275 ILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS 334
           +L+DACALGPKDMD FGLSL +PDFLICS Y++FGENPSGFGCLF+KKS   IL  N+S 
Sbjct: 304 VLVDACALGPKDMDCFGLSLFQPDFLICSCYKVFGENPSGFGCLFIKKSATSILETNSSV 363

Query: 335 GMVSLLPAKKQLWLTDEFSSCETEP-EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG 393
           G+V+L+  KKQ          E EP   TS S                I+  Q  K  +G
Sbjct: 364 GIVNLVQEKKQQDSILTLHLDEEEPFYMTSLSSM--------------IQTSQPAKFVEG 409

Query: 394 EISEVRRAEADSIQ-----------QKNANTNGGGGSE--------IECRGLDQVDSLGL 434
           E SE++  EA S+            +K    +  G  E        IECR LDQVDSLGL
Sbjct: 410 ESSEIKIVEAPSVSKPSEICEIEEVEKQVQIHEKGVKESDKNEHFDIECRCLDQVDSLGL 469

Query: 435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE 494
            +I+ R R LINWLVN+++KL+HPNTEG +LV IYGPK++FDRGPA+AFN+FDWK EK+E
Sbjct: 470 LLINDRARYLINWLVNSMLKLKHPNTEGVSLVTIYGPKVKFDRGPAIAFNIFDWKGEKVE 529

Query: 495 PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI 554
           PVLVQKLADR NIS+SYG LHHIWF+DKY  +K  VL++  ++   K          +GI
Sbjct: 530 PVLVQKLADRSNISISYGLLHHIWFADKYADKKGRVLKENKKKDNEK----------VGI 579

Query: 555 TVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTIEV 603
           TVVTA+LG+LANF+++Y+LW FVA+FLDADFVEK RWRYTAL+QKT+EV
Sbjct: 580 TVVTAALGFLANFDNIYKLWCFVARFLDADFVEKERWRYTALNQKTVEV 628

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	603
TAIR|locus:2166523	570	AT5G51920 [Arabidopsis thalian	0.285	0.301	0.571	1e-92
TAIR|locus:2158088	870	AT5G66950 [Arabidopsis thalian	0.469	0.325	0.383	1.2e-85
TAIR|locus:2046837	895	AT2G23520 [Arabidopsis thalian	0.449	0.302	0.364	2e-80
TAIR|locus:2127253	559	AT4G22980 "AT4G22980" [Arabido	0.348	0.375	0.424	2.4e-66
TAIR|locus:2115179	896	AT4G37100 [Arabidopsis thalian	0.310	0.208	0.402	2.4e-64
UNIPROTKB|F1SAI5	889	LOC100621611 "Uncharacterized	0.129	0.087	0.380	2.3e-10
RGD|1308496	698	Mocos "molybdenum cofactor sul	0.129	0.111	0.347	1.6e-09
UNIPROTKB|Q96EN8	888	MOCOS "Molybdenum cofactor sul	0.129	0.087	0.326	2.2e-09
MGI|MGI:1915841	862	Mocos "molybdenum cofactor sul	0.129	0.090	0.336	2.3e-08
UNIPROTKB|F1N3A9	849	MOCOS "Molybdenum cofactor sul	0.129	0.091	0.358	4.8e-08

TAIR|locus:2166523 AT5G51920 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
 Identities = 100/175 (57%), Positives = 126/175 (72%)

Query:   191 VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXXX--FV 248
             VYDYESEAV  + R SEKRGA+V +AEFSWPRL++ S                     +V
Sbjct:   216 VYDYESEAVSEINRVSEKRGAKVAAAEFSWPRLKLCSSKLRKLVTAGKNGSKTKKKGIYV 275

Query:   249 FPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 308
             FPLHSR+TG+RYPYLWM +AQEN WH++IDAC LGPKDMDSFGLS+  PDF++CSFY++F
Sbjct:   276 FPLHSRVTGSRYPYLWMSVAQENGWHVMIDACGLGPKDMDSFGLSIYNPDFMVCSFYKVF 335

Query:   309 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTD-EFSSCETEPEQT 362
             GENPSGFGCLFVKKST+ IL  +T  GM++L+P    + L   E +  +T+ E+T
Sbjct:   336 GENPSGFGCLFVKKSTISILESSTGPGMINLVPTDNPISLHALEINRTQTDSEET 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TAIR|locus:2158088 AT5G66950 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 1.2e-85, Sum P(2) = 1.2e-85
 Identities = 129/336 (38%), Positives = 188/336 (55%)

Query:    36 VSKSRNTSA-DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQID 94
             + +SR+ +  + +R+F  + A+S+     F + E+LP L+++LT F   YP+Y  + ++D
Sbjct:    75 LGRSRSLARLNAQREF--LRATSLAAQRAFESEETLPELEEALTIFLTMYPKYQSSEKVD 132

Query:    95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQEXXXXXXXXXXXXQNLDIPFFSVSYK 154
             ++R  EY+ LSL    CLDY G GLFSY Q                    D   FS+S  
Sbjct:   133 ELRNDEYFHLSLPK-VCLDYCGFGLFSYLQ---------------TVHYWDTCTFSLSEI 176

Query:   155 TGNLKTQLLHGGQESG-LESAMKKRIMDFLNISENDY----------------------- 190
             + NL    ++GG E G +E  +K RIMD+LNI EN+Y                       
Sbjct:   177 SANLSNHAIYGGAEKGSIEHDIKIRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFHT 236

Query:   191 ------VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXX 244
                   ++D+ES++V  M + ++++GA+V SA F WP LR+ S                 
Sbjct:   237 NKKLLTMFDHESQSVSWMGQCAKEKGAKVGSAWFKWPTLRLCSMDLKKEILSKKKRKKDS 296

Query:   245 XX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC 302
                 FVFP+ SR+TG++Y Y WM +AQ+N+WH+L+DA ALGPKDMDS GLSL RPDF+I 
Sbjct:   297 ATGLFVFPVQSRVTGSKYSYQWMALAQQNNWHVLLDAGALGPKDMDSLGLSLFRPDFIIT 356

Query:   303 SFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVS 338
             SFY++FG +P+GFGCL +KKS +  L   + SG  S
Sbjct:   357 SFYRVFGYDPTGFGCLLIKKSVISCL--QSQSGKTS 390

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2046837 AT2G23520 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-80, Sum P(2) = 2.0e-80
 Identities = 118/324 (36%), Positives = 178/324 (54%)

Query:    36 VSKSRNTSA-DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQID 94
             + +SR+ +    +R+F   TA  +  +  F + + +P L ++  +F   YP++  + ++D
Sbjct:    77 LGRSRSLARLHAQREFLRATA--LAAERAFESEDDIPELLEAFNKFLTMYPKFETSEKVD 134

Query:    95 QIRAKEYYQLSLSNHTCLDYFGIGLFSYNQ-LHKQEXXXXXXXXXXXXQNLDIPFFSVSY 153
             Q+R+ EY  L L +  CLDY G GLFSY Q LH  +                   FS+S 
Sbjct:   135 QLRSDEYGHL-LDSKVCLDYCGFGLFSYVQTLHYWDSCT----------------FSLSE 177

Query:   154 KTGNLKTQLLHGGQESG-LESAMKKRIMDFLNISENDY---------------------- 190
              T NL    L+GG E G +E  +K RIMD+LNI E++Y                      
Sbjct:   178 ITANLSNHALYGGAEIGTVEHDLKTRIMDYLNIPESEYGLVFTGSRGSAFRLLAESYPFH 237

Query:   191 -------VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXX 243
                    ++D+ES++V  M +T+ ++GA+  +A F WP L++ S                
Sbjct:   238 TNKRLLTMFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSHKKRKKKD 297

Query:   244 XXX--FVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI 301
                  FVFP  SR+TG++Y Y WM +AQ+N+WH+L+DA +LGPKDMDS GLSL RP+F+I
Sbjct:   298 SAVGLFVFPAQSRVTGSKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPEFII 357

Query:   302 CSFYQIFGENPSGFGCLFVKKSTV 325
              SFY++FG +P+GFGCL +KKS +
Sbjct:   358 TSFYKVFGHDPTGFGCLLIKKSVM 381

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2127253 AT4G22980 "AT4G22980" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.4e-66, Sum P(3) = 2.4e-66
 Identities = 93/219 (42%), Positives = 126/219 (57%)

Query:   191 VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXXXFVFP 250
             VY+YE EAVE MIR SEK+G +  SAEFSWP   I SE                  FVFP
Sbjct:   197 VYNYEDEAVEEMIRISEKKGIKPQSAEFSWPSTEILSEKLKRRITRSKRRGKRGL-FVFP 255

Query:   251 LHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGE 310
             L S +TGA Y Y WM +A+E++WH+L+D  ALG KDM++ GLSL +PDFLICSF ++ G+
Sbjct:   256 LQSLVTGASYSYSWMSLARESEWHVLLDTSALGSKDMETLGLSLFQPDFLICSFTEVLGQ 315

Query:   311 N-PSGFGCLFVKKSTVPILVDN-TSSGMVSLLPAKKQL-WLTDEFSSCETEPEQTSKSKQ 367
             + PSGFGCLFVKKS+   L +  T+   ++ + A+    W T E+ +   E       + 
Sbjct:   316 DDPSGFGCLFVKKSSSTALSEEPTNPENLTAVKAEPSWKWKT-EYQAGYNEITPVDH-ED 373

Query:   368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSI 406
              K A+T   S    +E+  S K ++  I       ADS+
Sbjct:   374 HKAAST---SSSEIVEIESSVKQDKAMIEFQGLDHADSL 409

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2115179 AT4G37100 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 2.4e-64, Sum P(2) = 2.4e-64
 Identities = 80/199 (40%), Positives = 116/199 (58%)

Query:   191 VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEXXXXXXXXXXXXXXXXXX--FV 248
             ++D+ES++V  M +T+ ++GA+  +A F WP L++ S                     FV
Sbjct:   249 MFDHESQSVNWMAQTAREKGAKAYNAWFKWPTLKLCSTDLKKRLSYKKRKKKDSAVGLFV 308

Query:   249 FPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 308
             FP  SR+TG +Y Y WM +AQ+N WH+L+DA +LGPKDMDS GLSL RP+F+I SFY++F
Sbjct:   309 FPAQSRVTGTKYSYQWMALAQQNHWHVLLDAGSLGPKDMDSLGLSLFRPEFIITSFYRVF 368

Query:   309 GENPSGFGCLFVKKSTVPILVDN---TSSGMVSLLPAKKQLWLTDEFSSCET----EPEQ 361
             G +P+GFGCL +KKS +  L      T SG+V + P +  L+L+D     +     E   
Sbjct:   369 GHDPTGFGCLLIKKSVMGSLQSQSGKTGSGIVKITP-EYPLYLSDSVDGLDGLVGFEDHN 427

Query:   362 TSKSKQEKVAATN--TFSG 378
               K+K+     T    FSG
Sbjct:   428 DDKTKEAHRPGTQMPAFSG 446

GO:0003824 "catalytic activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 141 (54.7 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:   247 FVFPLHSRMTGARYPYLW--------MR-IAQENDWHILIDACA-LGPKDMDSFGLSLVR 296
             F +P  S  +G+RYP  W        MR ++    W++L+DA A +G   +D   LS+ +
Sbjct:   199 FCYPAQSNFSGSRYPLSWIGEVKSGQMRPVSAPGKWYVLLDAAAYVGTSPLD---LSVHQ 255

Query:   297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328
              DF+  SFY+IFG  P+G G L V   T P+L
Sbjct:   256 ADFVPISFYKIFGF-PTGLGALLVNNRTAPLL 286

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IEA

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

RGD|1308496 Mocos "molybdenum cofactor sulfurase" [Rattus norvegicus (taxid:10116)]

 Score = 122 (48.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
 Identities = 32/92 (34%), Positives = 47/92 (51%)

Query:   247 FVFPLHSRMTGARYPYLWM---RIAQEND------WHILIDACA-LGPKDMDSFGLSLVR 296
             F +P  S  +G RYP  W+   +  Q +       W +L+DA + +    +D   LS  +
Sbjct:    34 FCYPAQSNFSGTRYPLSWIDEVKSGQRSPVRAPGKWFVLLDAASYVSTSPLD---LSAHQ 90

Query:   297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328
              DF+  SFY+IFG  P+G G L V K   P+L
Sbjct:    91 ADFIPISFYKIFGL-PTGLGALLVNKRVAPLL 121

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IEA;ISO

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IEA;ISO

UNIPROTKB|Q96EN8 MOCOS "Molybdenum cofactor sulfurase" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
 Identities = 30/92 (32%), Positives = 45/92 (48%)

Query:   247 FVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACA-LGPKDMDSFGLSLVR 296
             F +P  S  +G RYP  W+          ++    W +L+DA + +    +D   LS  +
Sbjct:   198 FCYPAQSNFSGVRYPLSWIEEVKSGRLHPVSTPGKWFVLLDAASYVSTSPLD---LSAHQ 254

Query:   297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328
              DF+  SFY+IFG  P+G G L V     P+L
Sbjct:   255 ADFVPISFYKIFGF-PTGLGALLVHNRAAPLL 285

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=IMP;TAS

GO:0043545 "molybdopterin cofactor metabolic process" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0032324 "molybdopterin cofactor biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:1915841 Mocos "molybdenum cofactor sulfurase" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 31/92 (33%), Positives = 45/92 (48%)

Query:   247 FVFPLHSRMTGARYPYLWMR---------IAQENDWHILIDACA-LGPKDMDSFGLSLVR 296
             F +P  S  +G RYP  W+          +     W +L+DA + +    +D   LS  +
Sbjct:   198 FCYPAQSNFSGTRYPLSWVEEVKSGRRSPVNAPGKWFVLLDAASYVSTSPLD---LSAHQ 254

Query:   297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328
              DF+  SFY+IFG  P+G G L V K   P+L
Sbjct:   255 ADFIPISFYKIFGL-PTGLGALLVNKHVAPLL 285

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008265 "Mo-molybdopterin cofactor sulfurase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0043545 "molybdopterin cofactor metabolic process" evidence=ISO

UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)]

 Score = 118 (46.6 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
 Identities = 33/92 (35%), Positives = 46/92 (50%)

Query:   247 FVFPLHSRMTGARYPYLWM--------RIAQE-NDWHILIDACA-LGPKDMDSFGLSLVR 296
             F +P  S  +G RYP  W+        R A     W +L+DA A +G   +D   LS+ +
Sbjct:   166 FCYPAQSNFSGTRYPLSWIGEVKSGRRRPASRPGKWFVLLDAAAFVGTSPLD---LSVHQ 222

Query:   297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL 328
              DF+  SFY+IFG  P+G G L V      +L
Sbjct:   223 ADFVPISFYKIFGF-PTGLGALLVNNRLAALL 253

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030151 "molybdenum ion binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00001078001 SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (652 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	603
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	1e-10
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	0.001

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 67/308 (21%), Positives = 120/308 (38%), Gaps = 79/308 (25%)

Query: 74  QQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPS 133
           +  L EF   Y        ID++RA E+ +L    +  LD+ G  L+S +QL        
Sbjct: 2   ESFLKEFGGYYGYPDGPKPIDELRATEFARLKGVVY--LDHAGATLYSESQL-------- 51

Query: 134 HLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYD 193
                   +     F S  Y  GN  +Q     + S    + +++++++ N   +DY   
Sbjct: 52  --------EAALADFSSNVY--GNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACV 101

Query: 194 YESEAVEAMIRTSE----------------------------KRGARVMSAEFSWPRLRI 225
           + S A  A+    E                            ++GA  ++ +      + 
Sbjct: 102 FTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQP 161

Query: 226 NSEKLRKMVVSKGKKKKQRG-------------LFVFPLHSRMTGARYPYLWMRIAQEND 272
            + +   +V S+G +++                LF FP     +GA++P   +++ ++N 
Sbjct: 162 TNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQ 221

Query: 273 ---------WHILIDA---CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV 320
                    W +L+DA   C   P D     LS    DF++ SFY+IFG  P+G G L V
Sbjct: 222 HSNFSKSGRWMVLLDAAKGCGTSPPD-----LSRYPADFVVVSFYKIFGY-PTGLGALLV 275

Query: 321 KKSTVPIL 328
           ++    +L
Sbjct: 276 RRDAAKLL 283

Length = 805

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 15/91 (16%)

Query: 426 LDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNV 485
           +D ++++GL  I      L  + +  L ++  P       ++IYGP+   DRG  ++FNV
Sbjct: 285 IDYLEAIGLENIEAHEHELTAYALERLGEI--PG------LRIYGPRDAEDRGGIISFNV 336

Query: 486 FDWKREKIEPVLVQKLADRENISLSYGSLHH 516
                E + P  V  + D E I++  G  HH
Sbjct: 337 -----EGVHPHDVGTILDEEGIAVRSG--HH 360

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	603
PLN02724	805	Molybdenum cofactor sulfurase	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
PLN02651	364	cysteine desulfurase	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
TIGR01814	406	kynureninase kynureninase. This model describes ky	100.0
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	100.0
PRK14012	404	cysteine desulfurase; Provisional	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
PRK03080	378	phosphoserine aminotransferase; Provisional	100.0
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	100.0
PLN02409	401	serine--glyoxylate aminotransaminase	99.97
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.96
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.96
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.96
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.96
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.95
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.95
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.94
PRK02769	380	histidine decarboxylase; Provisional	99.94
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.92
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.91
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	99.9
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.9
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.9
PLN03032	374	serine decarboxylase; Provisional	99.89
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.88
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.87
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.86
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.86
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.84
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.83
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.83
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.82
PLN02452	365	phosphoserine transaminase	99.81
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.81
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.8
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.8
PRK05367	954	glycine dehydrogenase; Provisional	99.8
PRK07179	407	hypothetical protein; Provisional	99.79
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.79
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.79
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.79
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.78
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.77
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.76
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.76
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.75
PRK08064	390	cystathionine beta-lyase; Provisional	99.75
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.75
PRK12566	954	glycine dehydrogenase; Provisional	99.75
PRK05367	954	glycine dehydrogenase; Provisional	99.73
PLN02880	490	tyrosine decarboxylase	99.73
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.72
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.7
PLN02483	489	serine palmitoyltransferase	99.67
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.65
PLN02271	586	serine hydroxymethyltransferase	99.64
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.64
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.63
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.63
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.63
PRK09064	407	5-aminolevulinate synthase; Validated	99.63
PRK06225	380	aspartate aminotransferase; Provisional	99.62
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.62
PLN02721	353	threonine aldolase	99.6
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.59
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	99.57
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.57
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.57
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.56
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.56
PLN02822	481	serine palmitoyltransferase	99.56
PRK13393	406	5-aminolevulinate synthase; Provisional	99.56
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.56
PRK07908	349	hypothetical protein; Provisional	99.56
PLN02590	539	probable tyrosine decarboxylase	99.55
PRK13392	410	5-aminolevulinate synthase; Provisional	99.54
PRK12462	364	phosphoserine aminotransferase; Provisional	99.54
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.5
PLN02263	470	serine decarboxylase	99.49
PRK05968	389	hypothetical protein; Provisional	99.48
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.47
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.47
PRK05957	389	aspartate aminotransferase; Provisional	99.47
PRK06108	382	aspartate aminotransferase; Provisional	99.46
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.46
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.44
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.44
PRK09105	370	putative aminotransferase; Provisional	99.44
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.44
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.42
PRK04311	464	selenocysteine synthase; Provisional	99.42
PRK08114	395	cystathionine beta-lyase; Provisional	99.41
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.41
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.4
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.4
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.4
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.4
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.4
PRK05764	393	aspartate aminotransferase; Provisional	99.39
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.39
PRK08361	391	aspartate aminotransferase; Provisional	99.38
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.37
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.36
PRK07582	366	cystathionine gamma-lyase; Validated	99.35
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.35
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.33
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.33
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.32
PRK08960	387	hypothetical protein; Provisional	99.32
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.32
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.32
PRK06460	376	hypothetical protein; Provisional	99.31
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.31
PRK08912	387	hypothetical protein; Provisional	99.3
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.3
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.3
PRK08861	388	cystathionine gamma-synthase; Provisional	99.29
PRK06767	386	methionine gamma-lyase; Provisional	99.29
PRK08776	405	cystathionine gamma-synthase; Provisional	99.28
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.28
PRK07503	403	methionine gamma-lyase; Provisional	99.28
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.27
PRK07505	402	hypothetical protein; Provisional	99.27
PRK07811	388	cystathionine gamma-synthase; Provisional	99.27
PRK08249	398	cystathionine gamma-synthase; Provisional	99.26
PRK08045	386	cystathionine gamma-synthase; Provisional	99.26
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.25
PRK05939	397	hypothetical protein; Provisional	99.25
PRK07681	399	aspartate aminotransferase; Provisional	99.24
PRK08574	385	cystathionine gamma-synthase; Provisional	99.24
PLN02509	464	cystathionine beta-lyase	99.24
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.24
PRK09028	394	cystathionine beta-lyase; Provisional	99.23
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.23
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.23
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.23
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.22
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.22
PRK07337	388	aminotransferase; Validated	99.21
PRK07550	386	hypothetical protein; Provisional	99.21
PRK08363	398	alanine aminotransferase; Validated	99.21
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.2
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.2
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.19
PRK06234	400	methionine gamma-lyase; Provisional	99.18
PRK07682	378	hypothetical protein; Validated	99.18
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.18
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.18
PRK03321	352	putative aminotransferase; Provisional	99.17
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.16
PRK07671	377	cystathionine beta-lyase; Provisional	99.16
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.16
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.16
PRK07324	373	transaminase; Validated	99.15
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.15
PLN02624	474	ornithine-delta-aminotransferase	99.12
PRK05942	394	aspartate aminotransferase; Provisional	99.11
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.11
PRK07683	387	aminotransferase A; Validated	99.1
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.09
PRK06207	405	aspartate aminotransferase; Provisional	99.09
PTZ00377	481	alanine aminotransferase; Provisional	99.08
PRK07568	397	aspartate aminotransferase; Provisional	99.08
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.07
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.06
PLN02242	418	methionine gamma-lyase	99.05
PRK07777	387	aminotransferase; Validated	99.03
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.02
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.02
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.02
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.02
PRK09265	404	aminotransferase AlaT; Validated	99.01
PRK10534	333	L-threonine aldolase; Provisional	99.0
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	98.99
PRK06836	394	aspartate aminotransferase; Provisional	98.99
PRK12414	384	putative aminotransferase; Provisional	98.98
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	98.97
PLN00175	413	aminotransferase family protein; Provisional	98.96
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	98.95
PRK01278	389	argD acetylornithine transaminase protein; Provisi	98.95
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	98.95
PRK03715	395	argD acetylornithine transaminase protein; Provisi	98.95
PRK07050	394	cystathionine beta-lyase; Provisional	98.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	98.94
PRK04260	375	acetylornithine aminotransferase; Provisional	98.93
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	98.93
PRK02627	396	acetylornithine aminotransferase; Provisional	98.93
PLN02955	476	8-amino-7-oxononanoate synthase	98.93
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	98.93
PRK07269	364	cystathionine gamma-synthase; Reviewed	98.93
PRK01533	366	histidinol-phosphate aminotransferase; Validated	98.92
PRK06107	402	aspartate aminotransferase; Provisional	98.92
PRK05967	395	cystathionine beta-lyase; Provisional	98.91
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	98.9
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	98.9
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	98.89
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	98.89
PRK09082	386	methionine aminotransferase; Validated	98.88
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	98.88
PRK08247	366	cystathionine gamma-synthase; Reviewed	98.88
PRK06425	332	histidinol-phosphate aminotransferase; Validated	98.88
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	98.87
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	98.86
PRK08175	395	aminotransferase; Validated	98.85
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	98.85
PTZ00433	412	tyrosine aminotransferase; Provisional	98.85
PRK06348	384	aspartate aminotransferase; Provisional	98.82
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	98.81
PRK09148	405	aminotransferase; Validated	98.79
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	98.79
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.78
PRK06290	410	aspartate aminotransferase; Provisional	98.78
PRK06434	384	cystathionine gamma-lyase; Validated	98.77
PLN02656	409	tyrosine transaminase	98.74
PLN02187	462	rooty/superroot1	98.74
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	98.73
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	98.72
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	98.72
PRK07366	388	succinyldiaminopimelate transaminase; Validated	98.71
PRK08068	389	transaminase; Reviewed	98.71
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	98.7
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	98.7
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	98.69
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	98.69
KOG1368	384	consensus Threonine aldolase [Amino acid transport	98.68
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	98.68
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	98.68
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	98.68
PRK08636	403	aspartate aminotransferase; Provisional	98.67
PRK07392	360	threonine-phosphate decarboxylase; Validated	98.67
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	98.66
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	98.66
PRK07049	427	methionine gamma-lyase; Validated	98.66
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	98.66
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	98.64
PRK02936	377	argD acetylornithine aminotransferase; Provisional	98.64
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	98.63
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	98.62
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.62
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	98.6
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.59
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	98.56
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	98.54
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	98.54
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	98.54
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	98.52
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	98.52
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.51
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	98.51
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	98.51
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.5
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	98.49
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	98.49
PRK15029	755	arginine decarboxylase; Provisional	98.47
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	98.46
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	98.44
PRK06541	460	hypothetical protein; Provisional	98.44
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	98.42
PRK05839	374	hypothetical protein; Provisional	98.42
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	98.41
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	98.41
PRK07036	466	hypothetical protein; Provisional	98.39
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.39
PLN02231	534	alanine transaminase	98.38
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.37
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.33
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.32
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	98.3
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	98.3
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.29
PRK06855	433	aminotransferase; Validated	98.27
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.25
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	98.23
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.21
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.21
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.21
PRK07482	461	hypothetical protein; Provisional	98.21
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.21
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.21
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	98.2
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	98.16
PRK07480	456	putative aminotransferase; Validated	98.12
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.11
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	98.11
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.08
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	98.07
PTZ00376	404	aspartate aminotransferase; Provisional	98.06
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	98.05
PRK06062	451	hypothetical protein; Provisional	98.04
PRK09792	421	4-aminobutyrate transaminase; Provisional	98.03
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.02
PRK13578	720	ornithine decarboxylase; Provisional	98.02
PLN02672	1082	methionine S-methyltransferase	97.97
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	97.95
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	97.95
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	97.94
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	97.93
PRK06917	447	hypothetical protein; Provisional	97.92
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	97.91
PRK06105	460	aminotransferase; Provisional	97.9
PRK12403	460	putative aminotransferase; Provisional	97.89
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	97.88
PLN00144	382	acetylornithine transaminase	97.88
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	97.85
PRK07483	443	hypothetical protein; Provisional	97.85
PRK08354	311	putative aminotransferase; Provisional	97.84
KOG0629	510	consensus Glutamate decarboxylase and related prot	97.83
PRK12566	954	glycine dehydrogenase; Provisional	97.83
PRK07678	451	aminotransferase; Validated	97.82
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	97.82
PRK15399	713	lysine decarboxylase LdcC; Provisional	97.81
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	97.81
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	97.81
PRK15400	714	lysine decarboxylase CadA; Provisional	97.78
PRK13237	460	tyrosine phenol-lyase; Provisional	97.78
PRK09257	396	aromatic amino acid aminotransferase; Provisional	97.77
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	97.74
PRK04612	408	argD acetylornithine transaminase protein; Provisi	97.73
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	97.72
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	97.7
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	97.69
PRK07481	449	hypothetical protein; Provisional	97.69
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	97.68
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	97.65
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	97.62
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	97.58
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	97.57
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	97.53
PRK06149	972	hypothetical protein; Provisional	97.53
PRK05965	459	hypothetical protein; Provisional	97.48
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	97.47
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	97.47
PRK06148	1013	hypothetical protein; Provisional	97.46
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	97.45
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	97.45
PRK08088	425	4-aminobutyrate aminotransferase; Validated	97.43
PLN02397	423	aspartate transaminase	97.36
PRK08297	443	L-lysine aminotransferase; Provisional	97.35
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	97.32
PRK09275	527	aspartate aminotransferase; Provisional	97.28
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	97.26
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	97.24
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	97.23
PRK08637	388	hypothetical protein; Provisional	97.22
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	97.2
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	97.15
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	97.15
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.13
PRK07046	453	aminotransferase; Validated	97.01
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	97.01
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	96.96
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	96.94
PLN02368	407	alanine transaminase	96.87
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	96.56
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	96.55
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	96.33
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	96.2
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	96.12
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	96.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	95.97
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	95.77
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	95.28
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	94.52
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	94.38
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	94.2
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	93.39
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	92.73
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	92.73
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	92.58
KOG0634	472	consensus Aromatic amino acid aminotransferase and	89.44
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	88.91
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	82.61
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	82.59
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	81.83

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=1.3e-63  Score=581.75  Aligned_cols=420  Identities=23%  Similarity=0.354  Sum_probs=332.0

Q ss_pred             HHHHHhCC-CCCC---chhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHh-cCCCCCCCCCCCCCCCCcccccc
Q 007454           78 TEFTKAYP-QYFD---TYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQE-SSPSHLRPSLPSQNLDIPFFSVS  152 (603)
Q Consensus        78 ~~F~~~~p-~y~~---~~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~-~~~~~~~~~~p~~~~~~p~f~~s  152 (603)
                      ..|+..|. .|.+   ..+++.+|+.+||.|  +++|||||||++++++.+++++. .++.                   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~R~~~fp~l--~~~iYLD~Aatt~~~~~~V~~~~~~~~~-------------------   60 (805)
T PLN02724          2 ESFLKEFGGYYGYPDGPKPIDELRATEFARL--KGVVYLDHAGATLYSESQLEAALADFSS-------------------   60 (805)
T ss_pred             hhHHhhhcccCCcccchhhHHHHHHHHhhhc--CCCEeEeCCCCCCCCHHHHHHHHHHHHh-------------------
Confidence            46787773 3444   345999997789999  67999999999999887776654 3321                   


Q ss_pred             ccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc--EEEe--------------------------ccCchHHHHHH
Q 007454          153 YKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND--YVYD--------------------------YESEAVEAMIR  204 (603)
Q Consensus       153 ~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e--~vf~--------------------------~es~sV~~~~~  204 (603)
                      +.++||++.+..+..+.+.++++|++||+|||+++++  ++|+                          .||+++..+++
T Consensus        61 ~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~  140 (805)
T PLN02724         61 NVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIRE  140 (805)
T ss_pred             hccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHH
Confidence            1347888876667778899999999999999998775  4663                          35667777788


Q ss_pred             HHHHcCCEEEEEeccC-------CccccCH--HHHHHHHhh----cCCCCCCeeEEEEeCccccccccccHHHHHHHHhC
Q 007454          205 TSEKRGARVMSAEFSW-------PRLRINS--EKLRKMVVS----KGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQEN  271 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~-------~~g~i~~--~~L~~~l~~----~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~  271 (603)
                      .++++|++|++++++.       ..+.++.  ++|++.+..    .....++|+||+++|+||+||.++|+++|.++++.
T Consensus       141 ~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~  220 (805)
T PLN02724        141 YALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDN  220 (805)
T ss_pred             HHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHh
Confidence            8899999999998762       1334433  567665421    00112467999999999999999999998766552


Q ss_pred             ---------CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-Cceeccc
Q 007454          272 ---------DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLP  341 (603)
Q Consensus       272 ---------g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~  341 (603)
                               +|+|+|||+|++|+  .++||+++++||+++|+|||||+ |+|+|+||||+++++.|+|.++| |++....
T Consensus       221 ~~~~~~~~g~~~v~vDaaQ~~g~--~piDv~~~~~Dfl~~S~HK~~Gg-P~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~  297 (805)
T PLN02724        221 QHSNFSKSGRWMVLLDAAKGCGT--SPPDLSRYPADFVVVSFYKIFGY-PTGLGALLVRRDAAKLLKKKYFGGGTVAASI  297 (805)
T ss_pred             cccccccCcceEEEeehhhhcCC--CCCChhhcCCCEEEEecceeccC-CCCceEEEEehhhhhhhcCCccCCCceEEEe
Confidence                     48999999999999  79999999999999999999997 99999999999998889998888 4553221


Q ss_pred             cccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchh
Q 007454          342 AKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEI  421 (603)
Q Consensus       342 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (603)
                      ....+....+          ..+.+  ||+||+|+++++|++                                      
T Consensus       298 ~~~~~~~~~~----------~~~~r--fE~GT~n~~~i~~l~--------------------------------------  327 (805)
T PLN02724        298 ADIDFVKRRE----------RVEQR--FEDGTISFLSIAALR--------------------------------------  327 (805)
T ss_pred             cccceeeccc----------cHHHH--hcCCCcchhHHHHHH--------------------------------------
Confidence            1111100000          01244  799999999999988                                      


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC----CCCCCCEEEEEEccCCCCccCHHH
Q 007454          422 ECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI----RFDRGPALAFNVFDWKREKIEPVL  497 (603)
Q Consensus       422 ~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~----~~~rg~ivsFnv~~~~g~~v~~~~  497 (603)
                        +|+++++++|+++|.+|++.|+++|+++|++++|.|  |.|+|+|||+..    ...|+|||+||+.+.+|+.|++.+
T Consensus       328 --aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~--g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~  403 (805)
T PLN02724        328 --HGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGN--GAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHRE  403 (805)
T ss_pred             --HHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCC--CCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHH
Confidence              799999999999999999999999999999999877  889999999851    236899999999999999999999


Q ss_pred             HHHHHhcCCcEEeeCcccCccCCchhhhh----hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHH
Q 007454          498 VQKLADRENISLSYGSLHHIWFSDKYQKE----KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRL  573 (603)
Q Consensus       498 V~~Lad~~gI~lr~G~~C~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l  573 (603)
                      +.+|++.+||++|+||+|+++.++.++++    .....+++..|++..+..     .+.+.|+||||||+|||+||||+|
T Consensus       404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~-----~~~~~G~vRvS~g~ynt~eDvd~l  478 (805)
T PLN02724        404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVI-----HGRPTGAVRVSFGYMSTFEDCQKF  478 (805)
T ss_pred             HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhhee-----cCcccceEEEEcCccCCHHHHHHH
Confidence            99999999999999999999988765432    234455677787643322     123458999999999999999999


Q ss_pred             HHHHHHH
Q 007454          574 WAFVAQF  580 (603)
Q Consensus       574 ~~~l~~~  580 (603)
                      +++|+++
T Consensus       479 v~~l~~~  485 (805)
T PLN02724        479 IDFIISS  485 (805)
T ss_pred             HHHHHHH
Confidence            9999885

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-59  Score=504.06  Aligned_cols=365  Identities=22%  Similarity=0.287  Sum_probs=303.8

Q ss_pred             hHHHHHHhhccCcCCC---CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccch
Q 007454           92 QIDQIRAKEYYQLSLS---NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQ  167 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~---~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~  167 (603)
                      ++..+|+ +||.|...   +.+|||++++++.|..|++++..++..                   ..+|++.. +..+..
T Consensus         4 ~~~~~r~-~fp~l~~~~~~~~vylD~aa~~~~p~~V~~a~~~~~~~-------------------~~an~~r~~~~~~~~   63 (405)
T COG0520           4 DVAAVRA-DFPALKREVGKPLVYLDNAATSQKPQAVLDAVAEYYRR-------------------YNANVHRGAHTLAEE   63 (405)
T ss_pred             ChHHHHh-hCHHHhhccCCCeEEecCcccccCCHHHHHHHHHHHHh-------------------hcCCcCcccchHHHH
Confidence            5677888 59998532   369999999999999999998876431                   23677743 445667


Q ss_pred             HHHHHHHHHHHHHHHcCCCC-CcEEEe----------------------------ccCc-hHHHHHHHHHHcCCEEEEEe
Q 007454          168 ESGLESAMKKRIMDFLNISE-NDYVYD----------------------------YESE-AVEAMIRTSEKRGARVMSAE  217 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~-~e~vf~----------------------------~es~-sV~~~~~~a~~~Ga~V~~~~  217 (603)
                      +++.++++|+.|++|+|+++ +||+|+                            .||+ .+..|.+.+++.|++|+++|
T Consensus        64 ~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~  143 (405)
T COG0520          64 ATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP  143 (405)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEe
Confidence            88999999999999999996 999874                            2333 23445778888899999999


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR  296 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~  296 (603)
                      ++ +++.++.++++++|.      ++|+||+++++||+||.++|+++| ++||++|++|+|||+|.+||  .++|+++++
T Consensus       144 ~~-~~g~~~~~~~~~~i~------~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h--~~idv~~l~  214 (405)
T COG0520         144 LD-DDGLLDLDALEKLIT------PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGH--LPIDVQELG  214 (405)
T ss_pred             cC-CCCCcCHHHHHHhcC------CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCc--cCCCchhcC
Confidence            98 799999999999876      379999999999999999999966 58999999999999999999  899999999


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |||++||+|||+++ |+|+|+||+|++.++.|.|..+| |++..+..... ....           ..+.+  ||.||+|
T Consensus       215 ~Df~afsgHKwl~g-P~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~-~~~~-----------~~p~r--fe~gTpn  279 (405)
T COG0520         215 CDFLAFSGHKWLLG-PTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEG-VTLA-----------ELPLR--FEAGTPN  279 (405)
T ss_pred             CCEEEEcccccccC-CCceEEEEEchHHHhhcCCcccCCCceeeeccccc-cccc-----------Ccchh--hccCCch
Confidence            99999999995544 99999999999999999888877 56654433111 1001           12344  7999999


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      +.++++++                                        +|+++++++|++.|.+|++.|++|++++|+++
T Consensus       280 ~~~~i~l~----------------------------------------aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~  319 (405)
T COG0520         280 IAGAIGLA----------------------------------------AALDYLLEIGMEAIEAHERELTEYLLEGLSEL  319 (405)
T ss_pred             HHHHHhHH----------------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999988                                        79999999999999999999999999999986


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      +        .|+||||.. ..|+++++|++.+     +++..|.+.++.+||++|+|++|+.+.++..            
T Consensus       320 ~--------~v~i~g~~~-~~r~~~vsF~v~~-----~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~------------  373 (405)
T COG0520         320 P--------GVEIYGPPD-ADRGGIVSFNVKG-----IHPHDVATLLDEKGIAVRAGHHCAQPLHRLL------------  373 (405)
T ss_pred             C--------CeEEecCCc-ccCceEEEEEeCC-----CCHHHHHHHHHhCCeEEEeccccccHHHHhc------------
Confidence            3        399999975 5799999999999     5678888888999999999999998653211            


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                     .. .+.+|+||++|||+||||+|+++|++++.
T Consensus       374 ---------------~~-~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         374 ---------------GV-DATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             ---------------CC-CCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence                           11 14599999999999999999999998864

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-58  Score=486.45  Aligned_cols=345  Identities=18%  Similarity=0.148  Sum_probs=301.7

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      +|||||+||||+.+.|+++|..+++.                   .++||+|.|.+|.++.++++++|++||+++|++|+
T Consensus         2 miYlD~~ATTp~~~~v~~~m~~~~~~-------------------~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~   62 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTE-------------------VFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE   62 (386)
T ss_pred             cccccccccCCCCHHHHHHHHHHHHh-------------------hcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            79999999999999999999875432                   35999999999999999999999999999999999


Q ss_pred             cEEEe-------------------------------ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhc
Q 007454          189 DYVYD-------------------------------YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       189 e~vf~-------------------------------~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~  237 (603)
                      ||+|+                               .||.+|....+++++.|++|.++|++ .+|.|++++|+++|++ 
T Consensus        63 eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~-~~G~v~~e~L~~al~~-  140 (386)
T COG1104          63 EIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVD-SNGLVDLEQLEEALRP-  140 (386)
T ss_pred             eEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCC-CCCeEcHHHHHHhcCC-
Confidence            99885                               25667766666677889999999999 5999999999999984 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                           +|.||++++++|+||++||++.|+ +|+++|+++|+||+|.+||  +|||+..+++|++++|+||++|  |+|+|
T Consensus       141 -----~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gk--ipi~~~~~~vD~ls~SaHK~~G--pkGiG  211 (386)
T COG1104         141 -----DTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGK--IPIDLEELGVDLLSFSAHKFGG--PKGIG  211 (386)
T ss_pred             -----CceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCc--eeccccccCcceEEeehhhccC--CCceE
Confidence                 699999999999999999999875 8999999999999999999  8999999999999999999999  99999


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      +||+|+.+.  +.|...||+.+                          +.  +++||.|+++|+|++             
T Consensus       212 aLyv~~~~~--~~p~i~GGgQE--------------------------~g--~RsGTenv~~Ivg~~-------------  248 (386)
T COG1104         212 ALYVRPGVR--LEPLIHGGGQE--------------------------RG--LRSGTENVPGIVGFG-------------  248 (386)
T ss_pred             EEEECCCCc--cCceeccCcCC--------------------------CC--CCCCCccHHHHHHHH-------------
Confidence            999988885  88888887631                          12  589999999999998             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .|++...+ .++....|++.|+++|.++|++.       .|.+.+.|... .+
T Consensus       249 ---------------------------~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~-------~p~~~~~g~~~-~r  292 (386)
T COG1104         249 ---------------------------KAAEIAVE-ELEEENARLRKLRDRLEDGLLEI-------IPDVYLNGDDE-PR  292 (386)
T ss_pred             ---------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-------CCcEEEcCCcc-cC
Confidence                                       46665443 57888899999999999999975       25588988752 45


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      -+.+++|.+++.+||.     +...++.+||++|+|++|+++..+++     ++|.+|+.-            .+...++
T Consensus       293 lP~~~~~~f~gv~gE~-----ll~~L~~~gI~vStGSACsS~~~~pS-----hVL~AmG~~------------~e~a~~s  350 (386)
T COG1104         293 LPNILNFSFPGVEGES-----LLLALDLAGIAVSTGSACSSGSLEPS-----HVLRAMGIS------------EELAHGS  350 (386)
T ss_pred             CCCeEEEEeCCCcHHH-----HHHhccccCeEEeccccccCCCCCcc-----HHHHHcCCC------------hHHhCcc
Confidence            6889999999988764     66778999999999999999999887     899998621            2456689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      ||+|||.+||+|||+++++.+.+.++..
T Consensus       351 iR~S~g~~tt~eei~~~~~~l~~~i~~l  378 (386)
T COG1104         351 IRFSLGRFTTEEEIDAAAEALKEIIKRL  378 (386)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988763

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=100.00  E-value=7.2e-58  Score=492.03  Aligned_cols=518  Identities=43%  Similarity=0.687  Sum_probs=391.0

Q ss_pred             hhhHhHHHhhhcccCCCCCCCCCCCChhHHHHHHHHHHhCCCCCCchhHHHHHHhhccCcCCC-CceeeecCCCCCCCHH
Q 007454           45 DCRRDFAAVTASSIFPDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLS-NHTCLDYFGIGLFSYN  123 (603)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~l~~~~~~F~~~~p~y~~~~~vd~iR~~efp~L~~~-~~vYLDyaa~tl~~~~  123 (603)
                      .+|+. .|+++  +|+++.|+.+++||++.+|+..|+++||.|++++++|++|..+|-||+.. ..+++||++.+++++.
T Consensus        66 v~Q~r-~ril~--~f~tta~dy~v~lp~~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~  142 (728)
T KOG2142|consen   66 VAQVR-LRILA--LFNTTAFDYEVSLPALTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYS  142 (728)
T ss_pred             HHHHH-HHHHH--HhccccccccchhHHHHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEee
Confidence            45555 66666  79999999999999999999999999999999999999999999999643 3589999999999984


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH-HHHHHH-HHHHHHHHcCCCCCcE-----------
Q 007454          124 QLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESA-MKKRIMDFLNISENDY-----------  190 (603)
Q Consensus       124 v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~-~~~~~~-aR~~Ia~~lna~~~e~-----------  190 (603)
                      +...               ||+.-.|+++.+.+|.+.++++++.+ ...... ++.+|+++||+++++|           
T Consensus       143 q~~~---------------i~~~~~~sls~~~~~ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSa  207 (728)
T KOG2142|consen  143 QTNE---------------ISDSEEFSLSESEANLSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSA  207 (728)
T ss_pred             eeee---------------ccccccccccccccCcccchhcccchhcccccceeeeeeecccccCCceEEEEEeeccccc
Confidence            4443               45555788899999999999987665 455555 9999999999999999           


Q ss_pred             ------------------EEeccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC--CCCeeEEEEe
Q 007454          191 ------------------VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK--KKQRGLFVFP  250 (603)
Q Consensus       191 ------------------vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~--~~~t~Lv~~~  250 (603)
                                        ||+|++++|+||.+.|+.+|+++..+++.||...++.++|++.+..+++.  ....+|++||
T Consensus       208 f~Ldaesy~f~~~~~lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp  287 (728)
T KOG2142|consen  208 FPLDAESYPFDFNPKLLTIFGYETGAVLVMNRSAELKGGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFP  287 (728)
T ss_pred             ccchHhhCCCcccchheeecCCCchhhHHHhhhhHhhcCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccc
Confidence                              57899999999999999999999999999999999999999999875433  3358999999


Q ss_pred             CccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCC-CCceEEEEEeCCCCcCcC
Q 007454          251 LHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGEN-PSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       251 ~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~-P~G~G~L~vkk~~~~~L~  329 (603)
                      .++++||.+++|+||..+++++|||+||+.++++++|+.++++.++|||+.+|||++||.+ |+|+|||.|+|.++..|+
T Consensus       288 ~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~  367 (728)
T KOG2142|consen  288 TQSRVTGGMYSYSWMTLALANNWHVLLDALALGPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGLE  367 (728)
T ss_pred             hHhhhcccchhHHHHHHHHhhhHHHHHhhhccCcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhcee
Confidence            9999999999999999999999999999999999999999999999999999999999988 999999999999987776


Q ss_pred             CCCC---C-Cceecccccccccccccc-----------------CC---------------CCCCcc--cCccccccccc
Q 007454          330 DNTS---S-GMVSLLPAKKQLWLTDEF-----------------SS---------------CETEPE--QTSKSKQEKVA  371 (603)
Q Consensus       330 p~~~---g-G~v~~~~~~~~~~~~~~~-----------------~~---------------~~~e~~--~~~~~~~~~e~  371 (603)
                      ....   + |+++..|.-.... ..++                 ++               +-++++  .+.|.+.+.|+
T Consensus       368 lrtGcfcn~Gack~~pgl~~~~-~~~~~~~g~~cgD~dg~~~s~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~~~se~e~  446 (728)
T KOG2142|consen  368 LRTGCFCNIGACKIYPGLYLEM-SQKGLSAGKGCGDNDGQPVSGYMQTPADVGAYLSAQVSDVLETDPLMKSPVFSEQED  446 (728)
T ss_pred             ccCCCCCCCcceeecccccHHH-HHHHhhhccccccCCCCcccccccchhhhhHHHHHhhhhhhhccccccccccchhhh
Confidence            4432   4 8887766311000 0000                 00               000000  00111111122


Q ss_pred             CCCChhhhhhhh---hh---h--cCc---cccchhHHHhhh---------------------------------------
Q 007454          372 ATNTFSGPMSIE---MR---Q--SGK---LEQGEISEVRRA---------------------------------------  401 (603)
Q Consensus       372 GT~n~~gi~gl~---~~---~--~~~---~~~~~i~~~~~~---------------------------------------  401 (603)
                      +-+....++..-   +|   .  ..|   -...||...+..                                       
T Consensus       447 ~~n~~a~Pl~~~~~~~R~~d~~~~s~~~~~~~~EI~~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~~~  526 (728)
T KOG2142|consen  447 SDNGIATPLLERVQLKRHFDAAVASYPIKCAAFEIEEENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKVQE  526 (728)
T ss_pred             ccccccCCcchhhcccchhhhhhhhhhhhhceeEeeccCccccccccccccccccccccceeeecccceeeeccccchhh
Confidence            222111111100   00   0  000   011122111100                                       


Q ss_pred             --------hh-hhhhhhc--cCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CCceEEE
Q 007454          402 --------EA-DSIQQKN--ANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE--GNALVKI  468 (603)
Q Consensus       402 --------~~-~~~~~~~--~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~--g~plv~I  468 (603)
                              .| .+|+.+.  .-.. ...+  +|.+||+.+++|+..+.+|.++|++||+..|..+.|+.+.  -+++|+|
T Consensus       527 d~~~~~~vs~~~sl~~~~a~~~s~-~d~~--~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~~~~~~~~~~~~~nlvq~  603 (728)
T KOG2142|consen  527 DEQSERRVSFPTSLEQGEASKCSS-YDCP--PCRGIDHVDSLGLNLTTNRGRELLNWLVQSLRNLQHSESSSTTVNLVQI  603 (728)
T ss_pred             hcccceeecchhhhhhhhhhhccc-ccCc--cccccchhhhhhHHhhhhhhhhHHHHHHHhcccccccccccccccceee
Confidence                    00 0111100  0000 0111  2789999999999999999999999999999887766433  3589999


Q ss_pred             eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454          469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD  548 (603)
Q Consensus       469 ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  548 (603)
                      |||+.+.+||+.++||++|+.++.++|.+|++++++++|.++.++.-++.+.++--......+.....     ..     
T Consensus       604 ygpk~~~erG~~~~fnl~d~~~~fr~p~IV~~lae~E~isl~~~~l~~iri~dp~~r~~dq~~~~r~~-----~~-----  673 (728)
T KOG2142|consen  604 YGPKTKYERGPAVAFNLFDLSKRFRAPIIVNKLAEREEISLGELSLGHIRIQDPCHRDIDQLLGQRRG-----RT-----  673 (728)
T ss_pred             ecCccccccChhheeehhhhhccccchhhhcchhhhhcccccceeeeeeEEecCcchhhhHHhhhhcc-----cc-----
Confidence            99999999999999999999999999999999999999999999999998877320011111211110     00     


Q ss_pred             CCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcccccccc
Q 007454          549 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYT  594 (603)
Q Consensus       549 ~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~~~  594 (603)
                      .+..+..+||+++||.+|+|||+++|+|+++||+++|++++.||-.
T Consensus       674 ~~~~Rl~vvt~~lgfltnfedv~K~w~fv~~fl~pgf~~~~~~~~~  719 (728)
T KOG2142|consen  674 NGESRLSVVTARLGFLTNFEDVYKLWEFVARFLDPGFVEKVELRTV  719 (728)
T ss_pred             ccceeEeeeeeehhhhhchHHHHHHHHHHHHhcChhhhhhccccch
Confidence            1345667999999999999999999999999999999999999965

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=7.4e-47  Score=409.72  Aligned_cols=362  Identities=19%  Similarity=0.245  Sum_probs=284.2

Q ss_pred             hHHHHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccc
Q 007454           92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGG  166 (603)
Q Consensus        92 ~vd~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~  166 (603)
                      +++.+|+ +||.+..    .+.||||||+++|+|++|++++.+++..                   ..+|+++ .+..+.
T Consensus         4 ~~~~~r~-~fp~~~~~~~~~~~iYld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~   63 (406)
T PRK09295          4 SVEKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRH-------------------GYAAVHRGIHTLSA   63 (406)
T ss_pred             ChHHHHh-hCccccCcCCCCceEEEeCcccccCCHHHHHHHHHHHHh-------------------cCCCCCCcccHHHH
Confidence            5678998 6999942    1479999999999999999998776431                   1256543 333455


Q ss_pred             hHHHHHHHHHHHHHHHcCC-CCCcEEEecc-----------------------------Cch-HHHHHHHHHHcCCEEEE
Q 007454          167 QESGLESAMKKRIMDFLNI-SENDYVYDYE-----------------------------SEA-VEAMIRTSEKRGARVMS  215 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna-~~~e~vf~~e-----------------------------s~s-V~~~~~~a~~~Ga~V~~  215 (603)
                      .+.+.++++|+.|++++|+ ++++++|+..                             |.+ ...+...+++.|++++.
T Consensus        64 ~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~  143 (406)
T PRK09295         64 QATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRV  143 (406)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence            6788999999999999998 6789977532                             111 22234556778999999


Q ss_pred             EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454          216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL  294 (603)
Q Consensus       216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~  294 (603)
                      ++++ +++.++.++|+++|.+      +|+||++++++|.||.++|++.| ++||++|+++++|++|..++  .++|+..
T Consensus       144 v~~~-~~~~~d~~~l~~~i~~------~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~  214 (406)
T PRK09295        144 IPLN-PDGTLQLETLPALFDE------RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMH--HPVDVQA  214 (406)
T ss_pred             EecC-CCCCCCHHHHHHhcCC------CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCc--cccCchh
Confidence            9988 4788999999998863      68999999999999999999855 68999999999999999998  7999999


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                      +++||+++|+||+||  |.|+|+||++++.++.++|...||+..........+.        +.   ..+.+  +|.||+
T Consensus       215 ~~~D~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~---~~~~r--~e~GT~  279 (406)
T PRK09295        215 LDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTT--------WA---KAPWR--FEAGTP  279 (406)
T ss_pred             cCCCEEEeehhhccC--CCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccc--------cC---Cchhh--cCCCCc
Confidence            999999999999999  8999999999998877866544443311100000000        00   01234  789999


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      |+.+++++.                                        .|++++.++|++++.+|.+.|+++|+++|++
T Consensus       280 ~~~~~~~l~----------------------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~  319 (406)
T PRK09295        280 NTGGIIGLG----------------------------------------AALDYVSALGLNNIAEYEQNLMHYALSQLES  319 (406)
T ss_pred             cHHHHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            999999987                                        6999999999999999999999999999987


Q ss_pred             CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          455 LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       455 L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      ++        .+++++|.   +|.++|+|++++.     .+..+.+.++++||.+|+|++|+.+.           +..+
T Consensus       320 ~~--------~~~~~~~~---~~~~iv~~~~~~~-----~~~~~~~~L~~~gI~v~~g~~c~~~~-----------~~~~  372 (406)
T PRK09295        320 VP--------DLTLYGPQ---NRLGVIAFNLGKH-----HAYDVGSFLDNYGIAVRTGHHCAMPL-----------MAYY  372 (406)
T ss_pred             CC--------CEEEeCCC---CCceEEEEEECCc-----CHHHHHHHHHhCCeEEeccccchHHH-----------HHHH
Confidence            63        38999974   4789999999874     34456666788999999999998542           2121


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                      .. .+.||+|+|+|||+||||+|+++|+++.
T Consensus       373 ----------------~~-~~~iRiS~~~ynt~~did~l~~~l~~i~  402 (406)
T PRK09295        373 ----------------NV-PAMCRASLAMYNTHEEVDRLVAGLQRIH  402 (406)
T ss_pred             ----------------CC-CCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence                            11 2689999999999999999999998864

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=9.3e-46  Score=390.04  Aligned_cols=353  Identities=18%  Similarity=0.181  Sum_probs=287.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .+.+|||+.+++|.++.|++++..|+..                   .++|||+. .||+++...++++|+.||+|+||+
T Consensus        42 ~~~vyld~~at~p~~~~Vldam~~~~~~-------------------~~~nPh~~-~y~w~~~~~~E~aR~~VAklInAd  101 (428)
T KOG1549|consen   42 TRPVYLDNQATGPMDPRVLDAMLPYLLE-------------------YLGNPHSR-SYGWKAEDAVEAAREQVAKLINAD  101 (428)
T ss_pred             CccEEEecCcCCCCCHHHHHHHHHHHHH-------------------hhcCCCcc-ccchhhhHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999876432                   34899999 789999899999999999999999


Q ss_pred             CCcEEEe------------------------------ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454          187 ENDYVYD------------------------------YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS  236 (603)
Q Consensus       187 ~~e~vf~------------------------------~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~  236 (603)
                      +.||+|+                              .||.+|.-..+.+++.|++|+++|++ .++.++.++|++.|+.
T Consensus       102 ~~dIiFts~ATEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~-~~~~~d~~~~~~~i~~  180 (428)
T KOG1549|consen  102 PSDIVFTSGATESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE-DSGLVDISKLREAIRS  180 (428)
T ss_pred             CCcEEEeCCchHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC-ccccccHHHHHHhcCC
Confidence            9999884                              24556666677888999999999999 7899999999999985


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                            +|+||++++++|++|+++|+++|. +|++.|++||+||||.+||  .++|++++++||+++|+|||||  |+|+
T Consensus       181 ------~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~--i~vDV~eln~D~~s~s~HK~yg--p~~i  250 (428)
T KOG1549|consen  181 ------KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGK--IPVDVQELNADFLSISAHKIYG--PPGI  250 (428)
T ss_pred             ------CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCC--ccccHHHcCchheeeecccccC--CCcc
Confidence                  799999999999999999999765 8999999999999999999  8999999999999999999999  8889


Q ss_pred             EEEEEeCCC-CcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          316 GCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       316 G~L~vkk~~-~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                      |+||||+.. .-.+.|++.||...                          +.  +++||.+.+.+++++           
T Consensus       251 GaLYvr~~~~~~~~~p~~~GGgq~--------------------------r~--~rsGT~~~~~~~~~g-----------  291 (428)
T KOG1549|consen  251 GALYVRRKRPRLRVEPPLSGGGQE--------------------------RG--LRSGTVATPLAVGLG-----------  291 (428)
T ss_pred             eEEEEccCCCcccccCcccCCccc--------------------------cc--cccCCcCchhhhhhH-----------
Confidence            999999822 22355777776521                          12  689999999999998           


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKI  473 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~  473 (603)
                                                   .|.+++.+ .+..+..+.+.+...|..++.+ +.        -+.++|+..
T Consensus       292 -----------------------------sA~e~~~~-~~~~~~~~~~~~~~~ll~~i~~~~~--------~~~~~G~~~  333 (428)
T KOG1549|consen  292 -----------------------------SAAEFVNK-EMAYDEAIIKRLSEKLLMGIGQSLP--------EVTLNGSGK  333 (428)
T ss_pred             -----------------------------HHHHHHHh-hcchhHHHHHHHHHHHHHHHhhhCc--------hhhccCCcc
Confidence                                         58888766 3455566666688888888765 32        277889763


Q ss_pred             CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          474 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       474 ~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                       ...++.++|+++-..|+.+       +.+...|.+|+|.+|......++     -++.+.+.+            ....
T Consensus       334 -~~~~~~~~~~~~~~~g~~~-------~~~~~~~~l~s~~a~~~~~~eps-----y~l~~~G~~------------~~~~  388 (428)
T KOG1549|consen  334 -SRYPGLVSLSFPYVEGESL-------LMDLKDVALSSGSACTSASLEPS-----YVLRAIGVD------------EDLA  388 (428)
T ss_pred             -cccccceeeecccccCcch-------hhhhhhhhhcccchhhcCCCCcc-----hhhhhcCcc------------hhhh
Confidence             5679999999996666542       44567899999999987754443     344333211            2345


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcccccc
Q 007454          554 ITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWR  592 (603)
Q Consensus       554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~  592 (603)
                      ...||+|+|.|||.+||+++++.++++....|--...|.
T Consensus       389 ~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~  427 (428)
T KOG1549|consen  389 HSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWE  427 (428)
T ss_pred             cceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCC
Confidence            579999999999999999999999999877665555553

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=1.5e-44  Score=386.17  Aligned_cols=332  Identities=14%  Similarity=0.112  Sum_probs=265.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      |||||+|++++|+.|++++.+++..                   .++||++ .+.++....+.++++|++|++++|++++
T Consensus         1 iYld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~   61 (364)
T PLN02651          1 LYLDMQATTPIDPRVLDAMLPFLIE-------------------HFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK   61 (364)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHh-------------------CCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6999999999999999998775421                   2367776 4444556678899999999999999999


Q ss_pred             cEEEecc-----------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          189 DYVYDYE-----------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       189 e~vf~~e-----------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +++|+..                             |.++......+++.|++++.+++++ ++.++.++|++.|.+   
T Consensus        62 ~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~-~~~~d~~~l~~~i~~---  137 (364)
T PLN02651         62 EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS-DGLVDLDELAAAIRP---  137 (364)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhcCC---
Confidence            9987532                             2222111222346799999999884 788999999999963   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         +|+|+++++++|+||.++|++.| ++||++|++++||++|.+|+  .++|++.+++||+++|+|||+|  |.|+|+|
T Consensus       138 ---~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~--~~~~~~~~~~D~~~~s~hK~~g--p~G~g~l  210 (364)
T PLN02651        138 ---DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGK--IPVDVDDLGVDLMSISGHKIYG--PKGVGAL  210 (364)
T ss_pred             ---CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCC--cccCcccCCCCEEEechhhhCC--CCceEEE
Confidence               68999999999999999999966 58999999999999999998  7999999999999999999977  9999999


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      |+|++....+.|...||...                          .+  ++.||+|+++++++.               
T Consensus       211 ~v~~~~~~~l~p~~~g~~~~--------------------------~~--~~~GT~~~~~~~~l~---------------  247 (364)
T PLN02651        211 YVRRRPRVRLEPLMSGGGQE--------------------------RG--RRSGTENTPLVVGLG---------------  247 (364)
T ss_pred             EEcCCCCCCCCccccCCCcc--------------------------CC--ccCCCccHHHHHHHH---------------
Confidence            99999888888877664310                          11  579999999999988               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC-CC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF-DR  477 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~-~r  477 (603)
                                               ++++++.+ +++++.+|.+.|.++|++.|+++       .|.++|+||.... ++
T Consensus       248 -------------------------~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~-------~~~~~i~~~~~~~~~~  294 (364)
T PLN02651        248 -------------------------AACELAMK-EMDYDEKHMKALRERLLNGLRAK-------LGGVRVNGPRDPEKRY  294 (364)
T ss_pred             -------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh-------CCCEEEECCCCcccCc
Confidence                                     69999887 56999999999999999999862       1238999985433 34


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      ++|++|++++.+     ++.|.+.++.  |.+|+|++|+.+....+     +++++++..            .....|+|
T Consensus       295 ~~i~~~~~~~~~-----~~~~~~~L~~--i~v~~g~~c~~~~~~~~-----~~~~~~g~~------------~~~~~~~v  350 (364)
T PLN02651        295 PGTLNLSFAYVE-----GESLLMGLKE--VAVSSGSACTSASLEPS-----YVLRALGVP------------EEMAHGSL  350 (364)
T ss_pred             CCEEEEEeCCCC-----HHHHHHHhCC--EEEEchhhcCCCCCCcC-----HHHHHcCCC------------hHHhCceE
Confidence            789999998754     3445544443  99999999999876654     667666410            11234799


Q ss_pred             EEecCCCCCHHHHH
Q 007454          558 TASLGYLANFEDVY  571 (603)
Q Consensus       558 R~Slg~~tt~eDVd  571 (603)
                      |+|||+|||+||||
T Consensus       351 R~S~~~~~t~~did  364 (364)
T PLN02651        351 RLGVGRFTTEEEVD  364 (364)
T ss_pred             EEEcCCCCCHHHcC
Confidence            99999999999986

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=3.5e-44  Score=391.06  Aligned_cols=363  Identities=18%  Similarity=0.218  Sum_probs=278.6

Q ss_pred             HHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHH
Q 007454           95 QIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQES  169 (603)
Q Consensus        95 ~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~  169 (603)
                      .+|+ +||.++.    .+.+||||++++++|+.|++++.+++..                   ..+|+++. +..+....
T Consensus        16 ~~r~-~fp~~~~~~~~~~~iyLd~a~~~~~p~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~   75 (424)
T PLN02855         16 ETRP-DFPILDQTVNGSKLVYLDNAATSQKPAAVLDALQDYYEE-------------------YNSNVHRGIHALSAKAT   75 (424)
T ss_pred             HHHH-hCchhccccCCCCeEEeeCccccCCCHHHHHHHHHHHHh-------------------cCCCCCCccchHHHHHH
Confidence            4676 6999842    2479999999999999999998775432                   12454432 22234456


Q ss_pred             HHHHHHHHHHHHHcCCC-CCcEEEecc-----------------------------CchH-HHHHHHHHHcCCEEEEEec
Q 007454          170 GLESAMKKRIMDFLNIS-ENDYVYDYE-----------------------------SEAV-EAMIRTSEKRGARVMSAEF  218 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~-~~e~vf~~e-----------------------------s~sV-~~~~~~a~~~Ga~V~~~~~  218 (603)
                      +.++++|+.|++++|++ +++++|+..                             |.+. ..+...+++.|++++.+++
T Consensus        76 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~  155 (424)
T PLN02855         76 DAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGL  155 (424)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEec
Confidence            78899999999999996 578977532                             2221 2234456778999999998


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                      ++ ++.++.++|++.|..      +|+||++++++|.||.++|++.| ++|+++|++|++|++|+.|+  .++|+..+++
T Consensus       156 ~~-~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~--~~~~~~~~~~  226 (424)
T PLN02855        156 TP-DEVLDVEQLKELLSE------KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPH--MPVDVQTLGA  226 (424)
T ss_pred             CC-CCCcCHHHHHHHhcc------CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--cCCCchhcCC
Confidence            74 566899999999863      68999999999999999999865 58999999999999999998  7899999999


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ||+++|+||++|  |.|+|+||++++.++.++|...||...... ... +   .    .+.   ..+++  +|.||+|++
T Consensus       227 d~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~p~~~g~~~~~~~-~~~-~---~----~~~---~~~~r--~e~GT~~~~  290 (424)
T PLN02855        227 DFLVASSHKMCG--PTGIGFLWGKSDLLESMPPFLGGGEMISDV-FLD-H---S----TYA---PPPSR--FEAGTPAIG  290 (424)
T ss_pred             CEEEeecccccC--CCccEEEEEchhhhhcCCCEecCCCceeee-ecC-c---c----ccC---CChhh--ccCCChHHH
Confidence            999999999988  889999999999988887655454321100 000 0   0    000   01234  789999999


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      +++++.                                        .+++++.++|+++|.+|++.|.++|++.|++++ 
T Consensus       291 ~~~~l~----------------------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~-  329 (424)
T PLN02855        291 EAIGLG----------------------------------------AAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVP-  329 (424)
T ss_pred             HHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC-
Confidence            999987                                        699999999999999999999999999998763 


Q ss_pred             CCCCCCceEEEeCCCC--CCCCCCEEEEEEccCCCCccCHHHHHHHHhc-CCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          458 PNTEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADR-ENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~--~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~-~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                             .+++|||..  ...|+++++|++++.+     +..|.+.++. +||.+|+|++|+.+..           ..+
T Consensus       330 -------g~~i~~~~~~~~~~r~~~v~~~~~~~~-----~~~v~~~L~~~~gI~v~~g~~c~~~~~-----------~~~  386 (424)
T PLN02855        330 -------GVRIYGPKPSEGVGRAALCAFNVEGIH-----PTDLSTFLDQQHGVAIRSGHHCAQPLH-----------RYL  386 (424)
T ss_pred             -------CEEEeCCCcccccCcccEEEEEECCcC-----HHHHHHHhcccCCEEEechhhhhHHHH-----------HHh
Confidence                   389999753  2357899999998743     3445555544 4999999999985321           111


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      +. .+.||+|+|+|||++||++|+++|++++..
T Consensus       387 ----------------g~-~~~iRiS~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        387 ----------------GV-NASARASLYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             ----------------CC-CCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence                            11 258999999999999999999999998754

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=2.4e-43  Score=378.28  Aligned_cols=342  Identities=19%  Similarity=0.185  Sum_probs=275.2

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND  189 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e  189 (603)
                      |||||+|++|+++.|++++.+++..                   ..+||++.+..+....+.++++|+.+++++|+++++
T Consensus         1 ~yld~aa~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~   61 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLEAMLPYFTE-------------------YFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDE   61 (379)
T ss_pred             CcCCCcCCCCCCHHHHHHHHHHHHh-------------------cCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence            6999999999999999998875431                   236777655455667788999999999999999989


Q ss_pred             EEEec----------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          190 YVYDY----------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       190 ~vf~~----------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      ++|+.                            ++.++......+++.|++|..+++++ ++.++.++|++.|.+     
T Consensus        62 i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~g~~~~~~l~~~i~~-----  135 (379)
T TIGR03402        62 IIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE-EGRLDLEELRAAITD-----  135 (379)
T ss_pred             EEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC-CCcCCHHHHHHhcCC-----
Confidence            87742                            22333333344556899999999874 788999999999863     


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                       +++|+++++.+|.||.++|++.| ++||++|+++++|++|.+|+  .++|+..+++||+++|+||++|  |.|+|+||+
T Consensus       136 -~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~g~l~v  210 (379)
T TIGR03402       136 -DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK--IPIDLKEMNIDMLSLSGHKLHG--PKGVGALYI  210 (379)
T ss_pred             -CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccc--cccCcccCCCCEEEEcHHHcCC--CCceEEEEE
Confidence             68999999999999999999966 48999999999999999998  7999999999999999999888  999999999


Q ss_pred             eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhh
Q 007454          321 KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR  400 (603)
Q Consensus       321 kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~  400 (603)
                      |++..  +.|...||...                          ..  ++.||+|+++++++.                 
T Consensus       211 ~~~~~--~~p~~~g~~~~--------------------------~~--~~~gt~~~~~~~~l~-----------------  243 (379)
T TIGR03402       211 RKGTR--FRPLLRGGHQE--------------------------RG--RRAGTENVPGIVGLG-----------------  243 (379)
T ss_pred             CCCCC--CCCcccCCccC--------------------------CC--cCCCCccHHHHHHHH-----------------
Confidence            98763  66665554310                          11  468999999999987                 


Q ss_pred             hhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          401 AEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                             ++++++.+ .++.+.+|.+.|.++|.++|++ ++        .++++|+.. ...++
T Consensus       244 -----------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~--------~~~~~~~~~-~~~~~  290 (379)
T TIGR03402       244 -----------------------KAAELATE-HLEEENTRVRALRDRLEAGLLARIP--------DARLNGDPT-KRLPN  290 (379)
T ss_pred             -----------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCC--------CEEEeCCCc-cCCCC
Confidence                                   68888876 6888999999999999999985 53        388999753 23357


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      +++|++++.+     +..|...++++||.+++|++|+.+....+     +++++++. .           .....++||+
T Consensus       291 ~~~~~~~~~~-----~~~~~~~l~~~gI~v~~g~~c~~~~~~~~-----~~~~~lg~-~-----------~~~~~~~vR~  348 (379)
T TIGR03402       291 TVNISFEYIE-----GEAILLLLDMEGICASSGSACTSGSLEPS-----HVLRAMGV-P-----------HTAAHGSIRF  348 (379)
T ss_pred             EEEEEecCCC-----HHHHHHhhccCCEEEEchhhcCCCCCCcC-----HHHHHcCC-C-----------hhhcCceEEE
Confidence            9999998754     44566666889999999999999877654     55555531 0           1223479999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          560 SLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+|+|||.|||++|++.|++.++.
T Consensus       349 S~~~~~t~~di~~~~~~l~~~~~~  372 (379)
T TIGR03402       349 SLSRYNTEEDIDYVLEVLPPIIAR  372 (379)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998765

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=8.8e-45  Score=388.59  Aligned_cols=338  Identities=21%  Similarity=0.263  Sum_probs=262.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccc-ccchHHHHHHHHHHHHHHHcCCCC-
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL-HGGQESGLESAMKKRIMDFLNISE-  187 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~-~g~~~~~~~~~aR~~Ia~~lna~~-  187 (603)
                      ||||++|++++|+.|++++.+++..                   ..+|+++... .+....++++++|++|++++|+++ 
T Consensus         1 iYld~~~~~~~p~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~   61 (371)
T PF00266_consen    1 IYLDNAGTGPMPKSVLEAISDYLRN-------------------FYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD   61 (371)
T ss_dssp             EEEBTSSS-B-BHHHHHHHHHHHHH-------------------SGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred             CEeeCCCccCCCHHHHHHHHHHHHH-------------------hhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc
Confidence            7999999999999999998875431                   2356644322 345568899999999999999999 


Q ss_pred             CcEEEe----------------------------ccCchHH-HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          188 NDYVYD----------------------------YESEAVE-AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       188 ~e~vf~----------------------------~es~sV~-~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      ++++|.                            .++.+.. .+...+++.|++|.+++++ .++.++.+++++.|..  
T Consensus        62 ~~v~~~~~~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~-~~~~~~~~~~~~~l~~--  138 (371)
T PF00266_consen   62 EEVVFTSNGTEALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPAD-PGGSLDLEDLEEALNP--  138 (371)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEG-TTSSCSHHHHHHHHHT--
T ss_pred             cccccccccchhhhhhhhccccccccccccccccccccccccccccccccchhhhcccccc-ccchhhhhhhhhhhcc--
Confidence            788764                            2334444 2345566899999999998 4789999999999973  


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                          +++||++++++|.||.++|++.|. +||++|+++++||+|++|.  .++|++++++||+++|+||++|  |.|+|+
T Consensus       139 ----~~~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~--~~id~~~~~~D~~~~s~~Kl~g--p~G~g~  210 (371)
T PF00266_consen  139 ----DTRLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGC--VPIDLDELGADFLVFSSHKLGG--PPGLGF  210 (371)
T ss_dssp             ----TESEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTT--SS--TTTTTESEEEEESTSTTS--SSTEEE
T ss_pred             ----ccceEEeecccccccEEeeeceehhhhhccCCceeEechhcccc--ccccccccccceeeecccccCC--CCchhh
Confidence                799999999999999999999775 8999999999999999999  7999999999999999999556  899999


Q ss_pred             EEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          318 LFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      ||+|++..+.++|...|| +......  ..+...+           .+.+  ++.||+|+..++++.             
T Consensus       211 l~v~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~-----------~~~~--~~~GT~~~~~~~~l~-------------  262 (371)
T PF00266_consen  211 LYVRPEAIERLRPAKPGGGYLDFPSL--QEYGLAD-----------DARR--FEGGTPNVPAIYALN-------------  262 (371)
T ss_dssp             EEEEHHHHHHHHTSSSSSSTTTHHHH--HHHCHHS-----------TTTG--SSSSS--HHHHHHHH-------------
T ss_pred             heehhhhhhccccccccccccccccc--hhccccc-----------cccc--ccccceeeehhhhHH-------------
Confidence            999999998888877774 3321111  1110000           1233  689999999999987             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .++++++++|+++|.+|...|.+++.+.|.+++        .++++||.....
T Consensus       263 ---------------------------~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~--------~~~~~~~~~~~~  307 (371)
T PF00266_consen  263 ---------------------------EALKLLEEIGIERIRERIRELAEYLREALEELP--------GIEVLGPDDEPR  307 (371)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------TEEESSSSCGGB
T ss_pred             ---------------------------HHHhhhhccccccchhhhhhHHHHHHhhhhcCC--------ceeEeeeccccc
Confidence                                       699999999999999999999999999999874        389999866667


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      ++++++|++++.++     ..+.+.++++||.+++|++|+.....        .+                   .. .++
T Consensus       308 ~~~i~~~~~~~~~~-----~~~~~~L~~~~I~~~~G~~~~~~~~~--------~~-------------------~~-~~~  354 (371)
T PF00266_consen  308 RPSIVSFNLPGSDA-----DDVVKYLEERGIAVSTGSACAGPSLD--------IL-------------------GM-GGV  354 (371)
T ss_dssp             GTTEEEEEETTSSH-----HHHHHHHHHHTEEEEESTTTCHHHHH--------HH-------------------HT-TTE
T ss_pred             ccceEEEeecCCCH-----HHHHHHHhhcCEEEeccCcccHHHHH--------Hh-------------------CC-CCE
Confidence            89999999988654     44555555559999999999832211        11                   01 179


Q ss_pred             EEEecCCCCCHHHHHHH
Q 007454          557 VTASLGYLANFEDVYRL  573 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l  573 (603)
                      ||+|+|+|||+||||+|
T Consensus       355 iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  355 IRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             EEEE-GTTSSHHHHHHH
T ss_pred             EEEeccCCCCHHHHhhC
Confidence            99999999999999987

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=2.7e-43  Score=380.57  Aligned_cols=361  Identities=15%  Similarity=0.180  Sum_probs=280.3

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESG  170 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~  170 (603)
                      +++++|+ +||.|. ++.|||||++++|+|+.+++++.+++..                   ..+|++. .+..+....+
T Consensus         2 ~~~~~r~-~fp~l~-~~~iyld~a~~~~~p~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~   60 (398)
T TIGR03392         2 NPAQFRQ-QFPALQ-DGTVYLDSAATALKPQAVIDATQQFYRL-------------------SSGTVHRSQHQQAQSLTA   60 (398)
T ss_pred             ChhHHHH-hCCccC-CCeEEeeCccccCCCHHHHHHHHHHHHh-------------------cCCCCCCcccHHHHHHHH
Confidence            4678888 699984 4689999999999999999998775431                   1255543 2323445678


Q ss_pred             HHHHHHHHHHHHcCCC-CCcEEEecc-----------------------------Cch-HHHHHHHHHHcCCEEEEEecc
Q 007454          171 LESAMKKRIMDFLNIS-ENDYVYDYE-----------------------------SEA-VEAMIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~-~~e~vf~~e-----------------------------s~s-V~~~~~~a~~~Ga~V~~~~~~  219 (603)
                      .++++|+.|++++|++ +++++|+..                             +.+ ...+...+++.|++++.++++
T Consensus        61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  140 (398)
T TIGR03392        61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIG  140 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecC
Confidence            8999999999999995 788876421                             112 122345567889999999987


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~D  298 (603)
                      . ++.++.++|+++|.+      +|+||++++.+|.||.++|++.| ++||++|+++++|++|..++  .++|++.+++|
T Consensus       141 ~-~~~~~~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~~~d  211 (398)
T TIGR03392       141 A-DLLPDIRQLPELLTP------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVH--GPPDVQALDID  211 (398)
T ss_pred             C-CCCcCHHHHHHHhcc------CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCC--CCCChhhcCCC
Confidence            3 677899999998863      68999999999999999999966 58999999999999999998  68999999999


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      |+++|+||+||  |.|+|+||++++.++.+.|...||........ ..+...+           .+.+  +|.||+|+++
T Consensus       212 ~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~--~e~GT~~~~~  275 (398)
T TIGR03392       212 FYAFSGHKLYG--PTGIGVLYGKTELLEAMPPWQGGGKMLSHVSF-DGFIPQA-----------VPHR--FEAGTPNIAG  275 (398)
T ss_pred             EEEEecccccC--CCceEEEEEcHHHHhhCCCeecCCceEeeccc-cccccCC-----------Chhh--ccCCCCCHHH
Confidence            99999999999  88999999999988778664433332110000 0010000           1344  7899999999


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      ++++.                                        +|++++.++|++++.+|.+.|+++|.+.|.+++  
T Consensus       276 ~~a~~----------------------------------------~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~--  313 (398)
T TIGR03392       276 VIGLS----------------------------------------AALEWLTDIDIAAAEAWSVSLADLAEERLAQLP--  313 (398)
T ss_pred             HHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            99987                                        699999899999999999999999999998763  


Q ss_pred             CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                            .++++++.    ..++++|++++.+     .+.+.+.++++||.++.|++|+..           ++..++   
T Consensus       314 ------g~~~~~~~----~~~i~~~~~~~~~-----~~~l~~~L~~~gI~v~~g~~~~~~-----------~~~~~g---  364 (398)
T TIGR03392       314 ------GFRSFRCP----GSSLLAFDFAGVH-----HSDLAALLAESGIALRAGQHCAQP-----------LMAALG---  364 (398)
T ss_pred             ------CeEEeCCC----CCcEEEEEeCCcC-----HHHHHHHHHhCCEEEecCccchHH-----------HHHHhC---
Confidence                  27888753    4689999988643     345556667789999999999842           222221   


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                   . .++||+|+|+|||.+||++|+++|++++.+
T Consensus       365 -------------~-~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~  395 (398)
T TIGR03392       365 -------------V-SGTLRASFAPYNTQQDVDALVDAVGAALEL  395 (398)
T ss_pred             -------------C-CCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence                         1 269999999999999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=1.3e-42  Score=375.59  Aligned_cols=361  Identities=17%  Similarity=0.202  Sum_probs=282.1

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESG  170 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~  170 (603)
                      +++++|+ +||.|. ++.+||||++++++|+.|++++.+++..                   ..+|+++ .+..+....+
T Consensus         5 ~~~~~r~-~fp~l~-~~~~yld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~   63 (401)
T PRK10874          5 NPAQFRA-QFPALQ-DAGVYLDSAATALKPQAVIEATQQFYSL-------------------SAGNVHRSQFAAAQRLTA   63 (401)
T ss_pred             CHHHHHH-hCCCcC-CceEEEeCCcccCCCHHHHHHHHHHHHh-------------------ccCCCCCcccHHHHHHHH
Confidence            5788998 599884 4689999999999999999998876432                   1256543 3334556788


Q ss_pred             HHHHHHHHHHHHcCC-CCCcEEEecc-----------------------------Cch-HHHHHHHHHHcCCEEEEEecc
Q 007454          171 LESAMKKRIMDFLNI-SENDYVYDYE-----------------------------SEA-VEAMIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna-~~~e~vf~~e-----------------------------s~s-V~~~~~~a~~~Ga~V~~~~~~  219 (603)
                      .++++|++|++++|+ ++++++|+..                             +.+ ...+...+++.|++|+.++++
T Consensus        64 ~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~  143 (401)
T PRK10874         64 RYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLG  143 (401)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence            999999999999999 7889976421                             122 123445567889999999987


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~D  298 (603)
                      + ++.++.++|++.|.+      +|+||++++++|.||.++|++.| ++|+++|+++++|++|.+++  .++|++.+++|
T Consensus       144 ~-~~~~d~~~l~~~i~~------~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~--~~~~~~~~~~d  214 (401)
T PRK10874        144 A-DRLPDVDLLPELITP------RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVH--FPADVQALDID  214 (401)
T ss_pred             C-CCcCCHHHHHHhcCc------CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccc--ccCCchhcCCC
Confidence            4 678899999999863      68999999999999999999966 58999999999999999988  68999999999


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      |+++|+||+||  |.|+|+||++++.++.+.|...||.....    ..|.       .++.. ..+.+  +|.||+|+++
T Consensus       215 ~~~~s~~K~~g--p~G~G~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-------~~~~~-~~~~~--~e~Gt~~~~~  278 (401)
T PRK10874        215 FYAFSGHKLYG--PTGIGVLYGKSELLEAMSPWQGGGKMLTE----VSFD-------GFTPQ-SAPWR--FEAGTPNVAG  278 (401)
T ss_pred             EEEEecccccC--CCccEEEEEchHHHhcCCCeecCCcceEe----eccC-------ccCCC-CChhh--ccCCCcCHHH
Confidence            99999999999  88999999999988878754433321100    0010       01100 01234  7899999999


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      ++++.                                        .|++++.++|++++.+|.+.|+++|.++|.+++  
T Consensus       279 ~~al~----------------------------------------~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~--  316 (401)
T PRK10874        279 VIGLS----------------------------------------AALEWLADIDINQAESWSRSLATLAEDALAKLP--  316 (401)
T ss_pred             HHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC--
Confidence            99987                                        699999899999999999999999999998763  


Q ss_pred             CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                            .++++++.    ..++++|++++.     +...+.++++++||.++.|++|+.+           ++..++   
T Consensus       317 ------g~~~~~~~----~~~i~~~~~~~~-----~~~~~~~~L~~~gI~v~~g~~~~~~-----------~~~~~g---  367 (401)
T PRK10874        317 ------GFRSFRCQ----DSSLLAFDFAGV-----HHSDLVTLLAEYGIALRAGQHCAQP-----------LLAALG---  367 (401)
T ss_pred             ------CEEEeCCC----CCcEEEEEECCc-----CHHHHHHHHHHCCcEEeccccchHH-----------HHHHhC---
Confidence                  27788753    468999998764     3345556667789999999999742           222221   


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                   . .+.||+|+++|||.+||++|+++|++++..
T Consensus       368 -------------~-~~~iRiS~~~~nt~edid~ll~al~~~~~~  398 (401)
T PRK10874        368 -------------V-TGTLRASFAPYNTQSDVDALVNAVDRALEL  398 (401)
T ss_pred             -------------C-CCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence                         1 269999999999999999999999998764

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=6.2e-42  Score=368.00  Aligned_cols=342  Identities=17%  Similarity=0.134  Sum_probs=272.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC-CCC
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI-SEN  188 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna-~~~  188 (603)
                      |||||+|++|+++.|++++.+++..                   .++||++.+.++......++++|+++++++|+ +++
T Consensus         1 ~yld~aa~~~~~~~v~~~~~~~~~~-------------------~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~   61 (382)
T TIGR03403         1 VYLDNNATTMLDPKVKELMDPFFCD-------------------IYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLD   61 (382)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHh-------------------cCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            6999999999999999998875431                   24788887778877788999999999999998 678


Q ss_pred             cEEEecc-------------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhc
Q 007454          189 DYVYDYE-------------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       189 e~vf~~e-------------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~  237 (603)
                      +++|+..                               +.++......++..|++|..++++ +++.++.++|++.|.. 
T Consensus        62 ~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~-~~g~~d~~~l~~~i~~-  139 (382)
T TIGR03403        62 DIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPIN-EQGTITAEQVREAITE-  139 (382)
T ss_pred             eEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecC-CCCCCCHHHHHHhccc-
Confidence            9976532                               122222233455679999999987 4688999999998863 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                           +|+|+++++.+|.||.++|++.| ++|+++|+++++|++|.+|+  .++|+.++++||+++|+|||||  |.|+|
T Consensus       140 -----~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~g  210 (382)
T TIGR03403       140 -----KTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGK--IPVDVQKAGVDFLSFSAHKFHG--PKGVG  210 (382)
T ss_pred             -----CCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCC--CccCccccCCCEEEEcchhhCC--CCceE
Confidence                 58999999999999999999966 48999999999999999998  6899999999999999999998  89999


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      +||+|++.  .+.|.+.||..         .                 ..  ++.||+|++++++++             
T Consensus       211 ~l~vr~~~--~~~p~~~g~~~---------~-----------------~~--~~~gt~~~~~~~al~-------------  247 (382)
T TIGR03403       211 GLYIRKGV--ELTPLFHGGEH---------M-----------------GG--RRSGTLNVPYIVAMG-------------  247 (382)
T ss_pred             EEEECCCC--CCCCcccCCCC---------C-----------------CC--cccCCcChHHHHHHH-------------
Confidence            99999886  36664444321         0                 11  468999999999987             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .++++..+ +++.+.+|++.|+++|+++|++++        .++++++.. .+
T Consensus       248 ---------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~--------~~~~~~~~~-~~  290 (382)
T TIGR03403       248 ---------------------------EAMRLANE-YLDFEKSHVRRLRDRLEDALLELP--------DVFVVGDRE-HR  290 (382)
T ss_pred             ---------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCC--------CEEEECCCC-CC
Confidence                                       57777666 488899999999999999998763        389999753 23


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      .+++++|++.+.+     ++.+.+.++++||.+|+|++|+....+++     .++.+++.       .     .....++
T Consensus       291 ~~~~~~~~~~~~~-----~~~~~~~L~~~gI~v~~g~~c~~~~~~~~-----~v~~~~g~-------~-----~~~~~~~  348 (382)
T TIGR03403       291 VPNTILISIKGVE-----GEAMLWDLNKAGIAASTGSACASEDLEAN-----PVMVAIGA-------D-----KELAHTA  348 (382)
T ss_pred             cCCEEEEEeCCCC-----HHHHHHhhccCCEEEEchhccCCCCCCcC-----HHHHHcCC-------C-----hHHhCee
Confidence            3679999998744     44455556788999999999998866554     55555431       0     1123479


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ||+|+++|||.+|||+|+++|++.+.+
T Consensus       349 iR~s~~~~~t~~did~~~~~l~~~~~~  375 (382)
T TIGR03403       349 IRLSLSRFTTEEEIDYTIEVFKKAVQR  375 (382)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987754

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=6.3e-41  Score=362.28  Aligned_cols=361  Identities=19%  Similarity=0.268  Sum_probs=279.6

Q ss_pred             HHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc-cccchHH
Q 007454           95 QIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQES  169 (603)
Q Consensus        95 ~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~-~~g~~~~  169 (603)
                      ++|+ +||.++.    +..+||||++++++|+.+++++.+++..                   ..+||++.. ..+....
T Consensus         2 ~~~~-~f~~~~~~~~~~~~~yld~~~~~~~p~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~   61 (403)
T TIGR01979         2 NIRA-DFPILKRKINGKPLVYLDSAATSQKPQQVIDAVAEYYRN-------------------SNANVHRGIHTLSVRAT   61 (403)
T ss_pred             chhh-hCchhcCCCCCCceEEEeCccccCCCHHHHHHHHHHHHh-------------------CCCCCCCCccHHHHHHH
Confidence            4677 5999942    1469999999999999999998765432                   125665432 2344566


Q ss_pred             HHHHHHHHHHHHHcCCC-CCcEEEecc-----------------------------CchH-HHHHHHHHHcCCEEEEEec
Q 007454          170 GLESAMKKRIMDFLNIS-ENDYVYDYE-----------------------------SEAV-EAMIRTSEKRGARVMSAEF  218 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~-~~e~vf~~e-----------------------------s~sV-~~~~~~a~~~Ga~V~~~~~  218 (603)
                      +.++++|+.|++++|++ +++++|+..                             |.+. ..+...++..|++++.+++
T Consensus        62 ~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~  141 (403)
T TIGR01979        62 EAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPL  141 (403)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEec
Confidence            78999999999999998 678876421                             1121 1233455678999999998


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                      + .++.++.++|++.+.+      +|+|+++++++|.||.++|+++|. +|+++|+++++|+++.+++  .++|+..+++
T Consensus       142 ~-~~~~~~~~~l~~~i~~------~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~--~~~~~~~~~~  212 (403)
T TIGR01979       142 D-DDGTLDLDDLEKLLTE------KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPH--MPVDVQALDC  212 (403)
T ss_pred             C-CCCCCCHHHHHHHhcc------CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCc--cccCccccCC
Confidence            8 5788999999998863      689999999999999999999774 7999999999999999998  6899999999


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ||+++|+||+||  |.|+|+|+++++..+.+.|...|| ++........          .+.   ..+.+  ++.||+++
T Consensus       213 d~~~~s~~K~~g--p~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~---~~~~~--~~~gt~~~  275 (403)
T TIGR01979       213 DFYVFSGHKMYG--PTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEET----------TYN---EAPHK--FEAGTPNI  275 (403)
T ss_pred             CEEEEecccccC--CCCceEEEEchHHHhcCCCeecCCCceeecccCcc----------ccC---CChhh--cCCCCccH
Confidence            999999999998  889999999998887787655554 3221110000          000   01233  68999999


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ..++++.                                        .+++++.++|++++.+|...|+++|.+.|.++.
T Consensus       276 ~~~~al~----------------------------------------~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~  315 (403)
T TIGR01979       276 AGVIGLG----------------------------------------AAIDYLEAIGLENIEAHEHELTAYALERLGEIP  315 (403)
T ss_pred             HHHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9998887                                        699999999999999999999999999998763


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                              .+++++|.....|+++++|++++.+     ...++++++++||.++.|++|+.+.           +...  
T Consensus       316 --------g~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~L~~~gI~v~~g~~~~~~~-----------~~~~--  369 (403)
T TIGR01979       316 --------GLRIYGPRDAEDRGGIISFNVEGVH-----PHDVGTILDEEGIAVRSGHHCAQPL-----------MRRF--  369 (403)
T ss_pred             --------CEEEeCCCCccccCceEEEEeCCcC-----HHHHHHHHhhCCEEEcchhhhhHHH-----------HHHh--
Confidence                    3899998654467999999997643     3456677788999999999996431           1111  


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                    .. .+.||+|+|+|||.+||++|+++|++++.
T Consensus       370 --------------~~-~~~iRiS~~~~~t~~di~~l~~~l~~~~~  400 (403)
T TIGR01979       370 --------------GV-PATCRASFYIYNTEEDIDALVEALKKVRK  400 (403)
T ss_pred             --------------CC-CCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence                          11 26899999999999999999999988764

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=2.4e-40  Score=358.61  Aligned_cols=344  Identities=16%  Similarity=0.133  Sum_probs=266.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      +..|||||++++|+++.|++++..++..                   .++|+++ .+..+....+.++++|+.|++++|+
T Consensus         2 ~~~~yld~aa~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~   62 (402)
T TIGR02006         2 KLPIYLDYAATTPVDPRVAEKMMPYLTE-------------------KFGNPASRSHSFGWEAEEAVENARNQVAELIGA   62 (402)
T ss_pred             CccEEeeCCcCCCCCHHHHHHHHHHHHh-------------------cCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            3479999999999999999998765321                   1356654 2223444567899999999999999


Q ss_pred             CCCcEEEecc-----------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454          186 SENDYVYDYE-----------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS  236 (603)
Q Consensus       186 ~~~e~vf~~e-----------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~  236 (603)
                      ++++++|+..                             |.++......+++.|++++.++++ +++.++.++|++.|..
T Consensus        63 ~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~  141 (402)
T TIGR02006        63 DSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPK-SNGLIDLEELKAAIRD  141 (402)
T ss_pred             CCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccC-CCCcCCHHHHHHhcCC
Confidence            9999977522                             223322233345679999999988 4788999999998863


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                            +++++++++.+|+||.++|++.| ++|+++|+++++|++|.+|+  .++|+..+++||+++|+||++|  |.|+
T Consensus       142 ------~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~--~~~~~~~~~~D~~~~s~~K~~g--p~G~  211 (402)
T TIGR02006       142 ------DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGK--IPINVNELKVDLMSISGHKIYG--PKGI  211 (402)
T ss_pred             ------CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCC--cccCccccCCCEEEEehhhhcC--CCce
Confidence                  58999999999999999999966 58999999999999999998  6999999999999999999998  9999


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |+||++++....+.|...||..                          .++  ++.||+|+.++++++            
T Consensus       212 G~l~~~~~~~~~~~~~~~g~~~--------------------------~~~--~~~gt~~~~~~~al~------------  251 (402)
T TIGR02006       212 GALYVRRKPRVRLEALIHGGGH--------------------------ERG--MRSGTLPTHQIVGMG------------  251 (402)
T ss_pred             EEEEEccCCCCCCCceecCCCc--------------------------cCC--ccCCCccHHHHHHHH------------
Confidence            9999998876667665554321                          012  578999999999987            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF  475 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~  475 (603)
                                                  .++++++. +++.+.+|.+.|.++|+++|++++        .|+++|+.  .
T Consensus       252 ----------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~--------~v~~~~~~--~  292 (402)
T TIGR02006       252 ----------------------------EAFRIAKE-EMAQDTAHVLALRDRLLNGIKSIE--------EVYLNGDL--E  292 (402)
T ss_pred             ----------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCC--------CEEEeCCc--c
Confidence                                        58887765 799999999999999999998763        38899864  2


Q ss_pred             CCC-CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          476 DRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       476 ~rg-~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                      .|. +++.|.+.+.++     +.+...  .++|.+|+|++|+++...++     .++++++..            .....
T Consensus       293 ~~~p~~~~v~f~~~~~-----~~~~~~--l~~i~v~~G~~c~~~~~~~~-----~~l~~lg~~------------~~~~~  348 (402)
T TIGR02006       293 HRVPGNLNVSFNYVEG-----ESLIMA--LKDLAVSSGSACTSASLEPS-----YVLRALGIN------------DELAH  348 (402)
T ss_pred             ccCCCeEEEEEeCcCH-----HHHHHh--cCCEEEechhhcCCCCCCcc-----HHHHHcCCC------------hhhcC
Confidence            343 444444444333     233332  26999999999998776654     455554310            12334


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          555 TVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++||+|+|+|||.||||+|+++|++++..
T Consensus       349 ~~vR~S~~~~~t~edid~l~~~l~~~~~~  377 (402)
T TIGR02006       349 SSIRFTIGRFTTEEEIDYAVKLVKSAIDK  377 (402)
T ss_pred             ceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999998865

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=1.7e-38  Score=340.95  Aligned_cols=345  Identities=14%  Similarity=0.122  Sum_probs=268.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      ++||||+|++++|+.|++++.+++..                   .++|+++.+..|....++++++|+.|++++|++++
T Consensus         1 ~~yld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~   61 (381)
T PRK02948          1 MIYLDYAATTPMSKEALQTYQKAASQ-------------------YFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ   61 (381)
T ss_pred             CEeccCCCCCCCCHHHHHHHHHHHHh-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            48999999999999999998775431                   23677776666666778999999999999999999


Q ss_pred             cEEEecc-----------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          189 DYVYDYE-----------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       189 e~vf~~e-----------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +++|+..                             |.++......++..|+++..++++ +++.++.++|++.+.+   
T Consensus        62 ~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~-~~~~~d~~~l~~~l~~---  137 (381)
T PRK02948         62 GIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVD-KSGLIRLVDLERAITP---  137 (381)
T ss_pred             eEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeC-CCCCCCHHHHHHhcCC---
Confidence            9977532                             222333334556789999999987 4688999999998853   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         +++||++++.+|.||.++|++.| ++|+++|++|++|++|.+|+  .++|+..+++|++++|+||+||  |.|+|++
T Consensus       138 ---~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~--~~~~~~~~~~d~~~~s~~K~~g--p~G~G~l  210 (381)
T PRK02948        138 ---DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGK--LPIDVFEMGIDSLSVSAHKIYG--PKGVGAV  210 (381)
T ss_pred             ---CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccc--cccCcccCCCCEEEecHHhcCC--CCcEEEE
Confidence               58999999999999999999966 58999999999999999998  6999999999999999999999  8899999


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      |++++..  +.+...++.        +                  ...  ++.||+|+++++++.               
T Consensus       211 ~~~~~~~--~~~~~~~~~--------~------------------~~~--~~~~t~~~~~~~a~~---------------  245 (381)
T PRK02948        211 YINPQVR--WKPVFPGTT--------H------------------EKG--FRPGTVNVPGIAAFL---------------  245 (381)
T ss_pred             EEcCCCC--CCCcccCCC--------C------------------CCC--cCCCCccHHHHHHHH---------------
Confidence            9998752  332222221        0                  012  578999999999887               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG  478 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg  478 (603)
                                               ++++.+.+ +++.+.++++.|+++|+++|+++.      .. +.++++.. ...+
T Consensus       246 -------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~------~~-v~~~~~~~-~~~~  291 (381)
T PRK02948        246 -------------------------TAAENILK-NMQEESLRFKELRSYFLEQIQTLP------LP-IEVEGHST-SCLP  291 (381)
T ss_pred             -------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCC------CC-EEEeCCCc-cCcC
Confidence                                     57776544 578899999999999999999873      22 44555322 3456


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      .+++|++++.++     +.+...++++||.+|.|++|+.++..++     +++.+++. .           .....++||
T Consensus       292 ~i~~~~~~~~~~-----~~~~~~l~~~gI~v~~g~~c~~~~~~p~-----~~~~~~~~-~-----------~~~~~~~lR  349 (381)
T PRK02948        292 HIIGVTIKGIEG-----QYTMLECNRRGIAISTGSACQVGKQEPS-----KTMLAIGK-T-----------YEEAKQFVR  349 (381)
T ss_pred             CEEEEEeCCCCH-----HHHHHhcccCCEEEEchHhcCCCCCCCC-----HHHHHcCC-C-----------hHHhCceEE
Confidence            799999987543     3344455788999999999998877664     56666531 0           011236999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          559 ASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       559 ~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      +|+|+|||.+||++|+++|++++..-
T Consensus       350 is~~~~~t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        350 FSFGQQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887643

>TIGR01814 kynureninase kynureninase

Probab=100.00  E-value=2.2e-38  Score=343.71  Aligned_cols=358  Identities=13%  Similarity=0.110  Sum_probs=253.9

Q ss_pred             hHHHHHHhhccCcCC---CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccch
Q 007454           92 QIDQIRAKEYYQLSL---SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQ  167 (603)
Q Consensus        92 ~vd~iR~~efp~L~~---~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~  167 (603)
                      ..+++|+ +||.+..   ++++|||++++||.|+.+.+++..++..                    ++++.+ .+..|..
T Consensus         9 ~~~~~r~-~f~~~~~~~~~~~iyld~~a~g~~p~~v~~a~~~~~~~--------------------~~~~~~~~~~~~~~   67 (406)
T TIGR01814         9 PLRALRD-EFHLPKIGDENAVIYLDGNSLGLMPKAARNALKEELDK--------------------WAKIAIRGHNTGKA   67 (406)
T ss_pred             hHHHHHH-hcCCCcccCCCCcEEecCCCcCcCcHHHHHHHHHHHHH--------------------HHHhhhccCccCCC
Confidence            4577887 5997622   3579999999999999999998765431                    111111 1211111


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEec----------------------------cCchHHH-HHHHHHHcCCEE----E
Q 007454          168 ESGLESAMKKRIMDFLNISENDYVYDY----------------------------ESEAVEA-MIRTSEKRGARV----M  214 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~----------------------------es~sV~~-~~~~a~~~Ga~V----~  214 (603)
                      ....+.+.++++ +++|+++++++|+.                            ++.++.. +...+++.|+++    .
T Consensus        68 ~~~~~~~~~~~~-~l~g~~~~~v~~~~~~t~~l~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~  146 (406)
T TIGR01814        68 PWFTLDESLLKL-RLVGAKEDEVVVMNTLTINLHLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMV  146 (406)
T ss_pred             Chhhhhhhhccc-cccCCCCCcEEEeCCchHHHHHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceE
Confidence            111223444446 89999999997742                            1222222 233456678887    4


Q ss_pred             EEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC
Q 007454          215 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS  293 (603)
Q Consensus       215 ~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls  293 (603)
                      .++.++ ++.++.+++++.+...   +++|+||++++++|.||.++|++.| ++||++|++++||++|.+|+  .++|+.
T Consensus       147 ~~~~~~-~g~~~~~~l~~~~~~~---~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~--~~id~~  220 (406)
T TIGR01814       147 QIEPRE-EETLRLEDILDTIEKN---GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGN--VPLDLH  220 (406)
T ss_pred             EeccCC-CCccCHHHHHHHHHhc---CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCC--cccccc
Confidence            555542 5778899999888531   2479999999999999999999966 58999999999999999999  799999


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      .+++||+++|+|||+++|| | |+||++++....+.|...|. +...  .. . +....    .+.   ..+.+  +|.|
T Consensus       221 ~~gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~~~~~p~~~g~~~~~~--~~-~-~~~~~----~~~---~~~~~--~~~G  285 (406)
T TIGR01814       221 DWGVDFACWCTYKYLNAGP-G-AGAFVHEKHAHTERPRLAGWWGHAR--PT-R-FKMDN----TLG---LIPCG--FRIS  285 (406)
T ss_pred             cCCCCEEEEcCccccCCCC-C-eEEEEehhhhhhcCCCCCcccCCCC--cc-c-ccccc----ccC---CCccc--eeeC
Confidence            9999999999999975435 9 88998777655577665551 1100  00 0 00000    000   01233  6899


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      |+|+++++++.                                        ++++++.++|++++.+|.+.|.++|.+.|
T Consensus       286 T~~~~~~~~l~----------------------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~l  325 (406)
T TIGR01814       286 NPPILSVAALR----------------------------------------GSLDIFDQAGMEALRKKSLLLTDYLEELI  325 (406)
T ss_pred             CccHHHHHHHH----------------------------------------HHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999987                                        69999999999999999999999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      .++..    |.|.++|++|.....|+++|+|.++ .++     +.+.+.++++||.+..                     
T Consensus       326 ~~~~~----~~~~~~i~~~~~~~~r~~~v~~~~~-~~~-----~~~~~~L~~~gi~v~~---------------------  374 (406)
T TIGR01814       326 KARCG----GPPVLTIITPRDHAQRGCQLSLTHP-VPG-----KAVFQALIKRGVIGDK---------------------  374 (406)
T ss_pred             HhhcC----CCCceEEeCCCChhhcCCeEEEEec-CCH-----HHHHHHHHHCCEEEec---------------------
Confidence            87521    2345899998643457899999997 333     3344444567987631                     


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~  582 (603)
                                         ...+.||+|+ |+|||.+||++|++.|++++|
T Consensus       375 -------------------~~~~~iRiS~~~~~nt~~did~l~~~l~~~~~  406 (406)
T TIGR01814       375 -------------------REPSVIRVAPVPLYNTFVDVYDAVNVLEEILD  406 (406)
T ss_pred             -------------------cCCCeEEEechhccCCHHHHHHHHHHHHHHhC
Confidence                               0125899999 699999999999999998875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=100.00  E-value=3.1e-37  Score=332.62  Aligned_cols=351  Identities=18%  Similarity=0.248  Sum_probs=265.1

Q ss_pred             HHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHH
Q 007454           93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE  172 (603)
Q Consensus        93 vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~  172 (603)
                      +.++|+ +||.++...++|||++|++++|+.+++++.+++...                   ..|+.+.+.......+.+
T Consensus         3 ~~~~r~-~f~~~~~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~   62 (397)
T TIGR01976         3 VEAVRG-QFPALADGDRVFFDNPAGTQIPQSVADAVSAALTRS-------------------NANRGGAYESSRRADQVV   62 (397)
T ss_pred             hhHHHh-hCCcCCCCCeEEecCCccCCCCHHHHHHHHHHHHhc-------------------CCCCCCCchHHHHHHHHH
Confidence            457887 699984212699999999999999999987654311                   123332222222345778


Q ss_pred             HHHHHHHHHHcCCCCCcEEEec----------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCcc
Q 007454          173 SAMKKRIMDFLNISENDYVYDY----------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~----------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      +++|+.|++++|+++++++|..                            ++.++ ..+...+++.|+++..++++++++
T Consensus        63 ~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~  142 (397)
T TIGR01976        63 DDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATG  142 (397)
T ss_pred             HHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCC
Confidence            9999999999999887886632                            12222 223355677899999999875578


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC  302 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~  302 (603)
                      .++.++|++.|..      +|+++++++.+|.||.++|++.| .+|+++|+++++|++|++|.  .++|+.++++||+++
T Consensus       143 ~~~~~~l~~~i~~------~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~--~~~~~~~~~~d~~~~  214 (397)
T TIGR01976       143 ELHPDDLASLLSP------RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH--GLIDVQATGADFLTC  214 (397)
T ss_pred             CcCHHHHHHhcCC------CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc--cCCCHHHcCCCEEEE
Confidence            8999999999863      68999999999999999999976 58999999999999999987  688999999999999


Q ss_pred             cccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          303 SFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       303 S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      |+|||||  | ++|+|+++++.++.+.+....            |....           .+.+  ++.||+|+..++++
T Consensus       215 s~~K~~g--~-~~G~l~~~~~~~~~l~~~~~~------------~~~~~-----------~~~~--~~~gt~~~~~~~~l  266 (397)
T TIGR01976       215 SAYKFFG--P-HMGILWGRPELLMNLPPYKLT------------FSYDT-----------GPER--FELGTPQYELLAGV  266 (397)
T ss_pred             echhhcC--C-ceEEEEEcHHHHhhCCCcccc------------CccCC-----------Ccch--hcCCCCCHHHHHHH
Confidence            9999999  6 499999999887767653211            10000           0233  68999999999888


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC--------------HHHHHHHHHHHHHHH
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--------------LTMISRRGRCLINWL  448 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG--------------l~~i~~r~~~L~~~L  448 (603)
                      .                                        +|++++..+|              ++++.+|++.|.++|
T Consensus       267 ~----------------------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  306 (397)
T TIGR01976       267 V----------------------------------------AAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYL  306 (397)
T ss_pred             H----------------------------------------HHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            7                                        5888777766              788999999999999


Q ss_pred             HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      .++|.++.        .++++++.....++++++|++.+.+     ...+.+.+.++||.+++|++|.....        
T Consensus       307 ~~~L~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~--------  365 (397)
T TIGR01976       307 LVGLSDLP--------GVTLYGVARLAARVPTVSFTVHGLP-----PQRVVRRLADQGIDAWAGHFYAVRLL--------  365 (397)
T ss_pred             HHHHhcCC--------CEEEeCCCCccCCCceEEEEeCCcC-----HHHHHHHHHHCCeEEEeCccchHHHH--------
Confidence            99998763        2889987433457899999997643     33444545677999999999974321        


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                         ...+              .....+.+|+|+++|||.+||++|+++|
T Consensus       366 ---~~~~--------------~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       366 ---RRLG--------------LNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             ---HHhC--------------CCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence               1111              0112368999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK14012 cysteine desulfurase; Provisional

Probab=100.00  E-value=4.4e-35  Score=317.56  Aligned_cols=345  Identities=18%  Similarity=0.154  Sum_probs=258.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc-cccchHHHHHHHHHHHHHHHcCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~-~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      ..|||||++++|+++.+++++.+++...         +        .++|+++.. ..+..+...++++|+.|++++|++
T Consensus         3 ~~iyld~a~~~~~~~~v~~a~~~~~~~~---------~--------~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~   65 (404)
T PRK14012          3 LPIYLDYSATTPVDPRVAEKMMPYLTMD---------G--------TFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD   65 (404)
T ss_pred             ceEEecCcCCCCCCHHHHHHHHHHHHhc---------c--------cCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            4699999999999999999987754210         0        125665532 223344678999999999999999


Q ss_pred             CCcEEEec-----------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhc
Q 007454          187 ENDYVYDY-----------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       187 ~~e~vf~~-----------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~  237 (603)
                      +++++|..                             ++.++......+++.|+++..++++ +++.++.++|+++|.. 
T Consensus        66 ~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~-~~g~~d~~~l~~~i~~-  143 (404)
T PRK14012         66 PREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQ-SNGIIDLEKLEAAMRD-  143 (404)
T ss_pred             cCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccC-CCCcCCHHHHHHhcCC-
Confidence            88887642                             1222222233345579999999988 4788999999999863 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                           +++|+++++.+|+||.++|++.| ++|+++|++|++|++|.+|+  .++|+..+++||+++|+||++|  |.|+|
T Consensus       144 -----~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~g~G  214 (404)
T PRK14012        144 -----DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGK--VPIDLSKLKVDLMSFSAHKIYG--PKGIG  214 (404)
T ss_pred             -----CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCC--cccCcccCCCCEEEEehhhccC--CCceE
Confidence                 68999999999999999999966 58999999999999999998  6899999999999999999998  88999


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      +||++++....+.|...||...                          ++  ++.||+++..+++++             
T Consensus       215 ~l~~~~~~~~~~~~~~~g~~~~--------------------------~~--~~~gt~~~~~~~~l~-------------  253 (404)
T PRK14012        215 ALYVRRKPRVRLEAQMHGGGHE--------------------------RG--MRSGTLPTHQIVGMG-------------  253 (404)
T ss_pred             EEEEecCCCCCCCceecCCCcc--------------------------CC--ccCCCcCHHHHHHHH-------------
Confidence            9999998765566655554310                          11  578999999998887             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 ++++.++. +++.+.+|.+.|.+++.+.|++++        .++++++.. ..
T Consensus       254 ---------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~--------~i~~~~~~~-~~  296 (404)
T PRK14012        254 ---------------------------EAARIAKE-EMATENERIRALRDRLWNGIKDIE--------EVYLNGDLE-QR  296 (404)
T ss_pred             ---------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCC--------CEEEeCCcc-cc
Confidence                                       57776653 678889999999999999998753        277887532 12


Q ss_pred             CCC--EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          477 RGP--ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       477 rg~--ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                      .++  .++|++.+  +     ..+...+  ++|.+++|.+|.+...++.     ..+..... .           .....
T Consensus       297 ~~~~~~~~~~~~~--~-----~~~~~~l--~~~~i~~g~~~~~~~~~~~-----~~~~~~~~-~-----------~~~~~  350 (404)
T PRK14012        297 VPGNLNVSFNYVE--G-----ESLIMAL--KDLAVSSGSACTSASLEPS-----YVLRALGL-N-----------DELAH  350 (404)
T ss_pred             CCCEEEEEEeCcC--H-----HHHHHhC--CCeEEEchhhhCCCCCCCC-----HHHHHcCC-C-----------hhhcC
Confidence            233  46666533  2     2233322  5899999999988765553     12222110 0           12334


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          555 TVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      ++||+|+++++|.+||+++++.|++++...
T Consensus       351 ~~iRls~~~~~t~~dvd~~~~~l~~~~~~~  380 (404)
T PRK14012        351 SSIRFSLGRFTTEEEIDYAIELVRKSIGKL  380 (404)
T ss_pred             ceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999988763

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=7.4e-35  Score=311.47  Aligned_cols=345  Identities=18%  Similarity=0.224  Sum_probs=257.0

Q ss_pred             eeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          110 TCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       110 vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      |||||++++ +.|+.+++++.+++...                   .+|++.. +..+......++++|+.|++++|+++
T Consensus         1 ~yld~a~~~~~~p~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~   61 (376)
T TIGR01977         1 IYFDNAATTYPKPDEVYEAMADFYKNY-------------------GGSPGRGRYRLALRASREVEETRQLLAKLFNAPS   61 (376)
T ss_pred             CCccCcccCCCCCHHHHHHHHHHHHhc-------------------CCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            699999988 68889998876653311                   0222211 11112335778899999999999976


Q ss_pred             C-cEEEec-------------------------cCchHH-HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          188 N-DYVYDY-------------------------ESEAVE-AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       188 ~-e~vf~~-------------------------es~sV~-~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      . +++|+.                         ++.++. .+...++..|.+++.++.++ ++.++.++|++.+..    
T Consensus        62 ~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~~----  136 (376)
T TIGR01977        62 SAHVVFTNNATTALNIALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN-EGLISPERIKRAIKT----  136 (376)
T ss_pred             CCeEEEeCCHHHHHHHHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC-CCCcCHHHHHHhcCC----
Confidence            4 776642                         122222 22344556699999999874 678899999998853    


Q ss_pred             CCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF  319 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~  319 (603)
                        ++++|++++.+|.||.++|+++| .+|+++|+++++|+++.+|.  .++|+..+++||+++|+|||+++ |.|+|+|+
T Consensus       137 --~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~--~~~~~~~~~~D~~~~s~~K~l~~-p~g~g~l~  211 (376)
T TIGR01977       137 --NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGV--IPIDMTELAIDMLAFTGHKGLLG-PQGTGGLY  211 (376)
T ss_pred             --CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCc--cCCCchhcCCCEEEecccccccC-CCCceEEE
Confidence              68999999999999999999976 48999999999999999998  79999999999999999999876 89999999


Q ss_pred             EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      ++++..  +++...||....    ..++....    .+      +.+  ++.||+++++++++.                
T Consensus       212 ~~~~~~--~~~~~~~~~~~~----~~~~~~~~----~~------~~r--~~~~t~~~~~~~a~~----------------  257 (376)
T TIGR01977       212 IREGIK--LKPLKSGGTGSH----SALIDQPS----EL------PDR--FESGTLNTPGIAGLN----------------  257 (376)
T ss_pred             EcCCcC--cCceecCCCccc----cccccccc----cc------hhh--ccCCCCCHHHHHHHH----------------
Confidence            999862  555444432210    00110000    01      123  689999999998876                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              ++++++.++|++++.+|.+.|.+++.+.|.++.        .+++++|.....+++
T Consensus       258 ------------------------~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~--------~~~~~~~~~~~~~~~  305 (376)
T TIGR01977       258 ------------------------AGIKFIEKIGIANIAKKECMLTEKLLNGLREIN--------KVKIYGPADPANRVG  305 (376)
T ss_pred             ------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCCCccccCC
Confidence                                    699999999999999999999999999998753        388999754345789


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      +++|++++++++    .+.+.|.+++||.++.|.+|+....           ..+               +....+.||+
T Consensus       306 ~v~~~~~~~~~~----~~~~~L~~~~gi~v~~g~~~~~~~~-----------~~~---------------g~~~~~~iRi  355 (376)
T TIGR01977       306 VVSFTVEGIDSE----EVADILDEKFDIATRTGLHCAPLAH-----------KTI---------------GTFATGTIRL  355 (376)
T ss_pred             eEEEEECCCCHH----HHHHHHhccCCEEEEcccccchHHH-----------HHh---------------CCCCCCeEEE
Confidence            999999876543    2344555555999999999986431           111               1123469999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 007454          560 SLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~  579 (603)
                      |++.+||.+||++|+++|++
T Consensus       356 s~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       356 SLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             ecCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=100.00  E-value=1.3e-34  Score=307.78  Aligned_cols=319  Identities=18%  Similarity=0.159  Sum_probs=246.5

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNISEND  189 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~~~e  189 (603)
                      ||||++++|+++.+++++.+++..                   .++||++. +.++..+.+.++++|+++++++|+++++
T Consensus         1 yld~a~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~   61 (353)
T TIGR03235         1 YLDHNATTPIDPAVAEAMLPWLLE-------------------EFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE   61 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHh-------------------cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCe
Confidence            899999999999999998775421                   12566553 3345556788999999999999999999


Q ss_pred             EEEeccC------------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          190 YVYDYES------------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       190 ~vf~~es------------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      ++|+..+                              .++......+++.|++|+.+++++ ++.++.++|++.+..   
T Consensus        62 v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~l~~~l~~---  137 (353)
T TIGR03235        62 VIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE-SGRIDVDELADAIRP---  137 (353)
T ss_pred             EEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC-CCcCCHHHHHHhCCC---
Confidence            9886432                              111112233456799999999884 688999999998853   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         +++++++++.+|.||.++|++.| ++|+++|+++++|++|.+|.  .++|++.+++||+++|+|||||  |.|+|+|
T Consensus       138 ---~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~--~~~~~~~~~~D~~~~s~~K~~g--p~g~g~l  210 (353)
T TIGR03235       138 ---DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGK--ITVDLSADRIDLISCSGHKIYG--PKGIGAL  210 (353)
T ss_pred             ---CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCC--ccccccccCCCEEEeehhhcCC--CCceEEE
Confidence               58999999999999999999866 58999999999999999998  7999999999999999999988  8999999


Q ss_pred             EEeCCCCc--CcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          319 FVKKSTVP--ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       319 ~vkk~~~~--~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      |++++...  .++|.+++|..                          .++  ++.||+|+++++++.             
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~~--~~~gt~~~~~~~al~-------------  249 (353)
T TIGR03235       211 VIRKRGKPKAPLKPIMFGGGQ--------------------------ERG--LRPGTLPVHLIVGMG-------------  249 (353)
T ss_pred             EEccCcccccccCceeeCCCC--------------------------cCc--cccCCCChHHHHHHH-------------
Confidence            99998642  24444444220                          022  579999999999987             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .+++++.. |++++.+|.+.|+++|+++|.++      |   ++++++.. ..
T Consensus       250 ---------------------------~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~------g---~~~~~~~~-~~  291 (353)
T TIGR03235       250 ---------------------------EAAEIARR-NAQAWEVKLRAMRNQLRDALQTL------G---VKLNGDPA-ET  291 (353)
T ss_pred             ---------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHHhccC------C---eEEeCCcc-cc
Confidence                                       68887764 89999999999999999999763      2   78888653 34


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      .+++++|++++.+     .+.+.+.+.+ +|.+++|.+|..+...+.     +++.+++.       +     .....++
T Consensus       292 ~~~i~~~~~~~~~-----~~~v~~~L~~-~i~v~~g~~~~~~~~~~~-----~~l~~~g~-------~-----~~~~~~~  348 (353)
T TIGR03235       292 IPHILNFSIDGVN-----SEALIVNLRA-DAAVSTGSACSSSKYEPS-----HVLQAMGL-------D-----TDRARGA  348 (353)
T ss_pred             cCCEEEEEeCCcC-----HHHHHHHHhC-CeEEEchhhcCCCCCCCC-----HHHHHcCC-------C-----HHHhCcc
Confidence            5789999998744     3445555543 899999999987765443     66777641       0     1234589


Q ss_pred             EEEec
Q 007454          557 VTASL  561 (603)
Q Consensus       557 VR~Sl  561 (603)
                      ||+||
T Consensus       349 ~r~s~  353 (353)
T TIGR03235       349 IRFSW  353 (353)
T ss_pred             EEEeC
Confidence            99997

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=3.3e-33  Score=298.61  Aligned_cols=340  Identities=18%  Similarity=0.252  Sum_probs=258.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCCC-C
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNIS-E  187 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~-~  187 (603)
                      +||||++++++|+.+++++.+++..                   .++||++ .+..+....+.++++|+.+++++|++ +
T Consensus         1 ~yl~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   61 (373)
T cd06453           1 VYLDNAATSQKPQPVIDAIVDYYRH-------------------YNANVHRGVHELSARATDAYEAAREKVARFINAPSP   61 (373)
T ss_pred             CcccCccccCCCHHHHHHHHHHHHh-------------------cCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6999999999999999998775431                   2366665 34445556788999999999999998 6


Q ss_pred             CcEEEeccC----------------------------chH-HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          188 NDYVYDYES----------------------------EAV-EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       188 ~e~vf~~es----------------------------~sV-~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      ++++++...                            .++ ..+...++..|++++.++.+ .++.++.++|++.|..  
T Consensus        62 ~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~l~~--  138 (373)
T cd06453          62 DEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD-DDGQLDLEALEKLLTE--  138 (373)
T ss_pred             CeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC-CCCCcCHHHHHHHhcC--
Confidence            677664321                            111 11223445679999999988 4788999999999863  


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                          ++++|++++.+|.||.++|++.| .+|+++|+++++|+++..+.  .++++..+++|++++|+||+||  |.|+|+
T Consensus       139 ----~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~--~~g~g~  210 (373)
T cd06453         139 ----RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGH--MPVDVQDLGCDFLAFSGHKMLG--PTGIGV  210 (373)
T ss_pred             ----CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCc--eeeeccccCCCEEEeccccccC--CCCcEE
Confidence                68999999999999999999855 58999999999999999887  6888888999999999999999  579999


Q ss_pred             EEEeCCCCcCcCCCCCCCce-eccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          318 LFVKKSTVPILVDNTSSGMV-SLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      ++++++..+.+++...||.. .........|  .           ..+.+  ++.||+|+.+++++.             
T Consensus       211 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~-----------~~~~~--~~~~t~~~~~~~al~-------------  262 (373)
T cd06453         211 LYGKEELLEEMPPYGGGGEMIEEVSFEETTY--A-----------DLPHK--FEAGTPNIAGAIGLG-------------  262 (373)
T ss_pred             EEEchHHhhcCCCeecCCCcccccccccccc--C-----------CCccc--cCCCCCCHHHHHHHH-------------
Confidence            99999988888765544332 1100000001  0           01223  678999999988876             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .+++.+.+.|++.+.++.+.+.+++.+.|.+++        .++++.+.  ..
T Consensus       263 ---------------------------~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~--~~  305 (373)
T cd06453         263 ---------------------------AAIDYLEKIGMEAIAAHEHELTAYALERLSEIP--------GVRVYGDA--ED  305 (373)
T ss_pred             ---------------------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCc--cc
Confidence                                       688888888999999999999999999998753        37777653  34


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      +++++.|++++++     ...+.+.+..+||.++.|..|..+.           +..+.                 ..+.
T Consensus       306 ~~~~~~~~~~~~~-----~~~i~~~l~~~gi~i~~g~~~~~~~-----------~~~~~-----------------~~~~  352 (373)
T cd06453         306 RAGVVSFNLEGIH-----PHDVATILDQYGIAVRAGHHCAQPL-----------MRRLG-----------------VPGT  352 (373)
T ss_pred             cCCeEEEEECCcC-----HHHHHHHHHHCCEEeccCccchhHH-----------HHHhC-----------------CCCe
Confidence            6889999997643     3344444456899999999987642           11110                 1268


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q 007454          557 VTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l  577 (603)
                      ||+|+|++||.+|+|+|+++|
T Consensus       353 iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         353 VRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             EEEEecCCCCHHHHHHHHhhC
Confidence            999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=100.00  E-value=1.9e-32  Score=294.98  Aligned_cols=340  Identities=15%  Similarity=0.067  Sum_probs=240.4

Q ss_pred             ccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          101 YYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       101 fp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .|.+. ..++|||++.+++.+..|++++...+.                      ++.|.    +....++++++|+.++
T Consensus         6 ~~~~~-~~~~~f~~Gp~~~~~~~v~~a~~~~~~----------------------~~~hr----~~~f~~~~~~~r~~l~   58 (378)
T PRK03080          6 IPALR-PADPRFSSGPCKKRPGWQLEALADALL----------------------GRSHR----QKPVKALLKRVIEGTR   58 (378)
T ss_pred             CCCcC-CCCCCcCCCCcCCChHHHHHHHHhhhc----------------------ccCcC----CHHHHHHHHHHHHHHH
Confidence            46663 458999999999998889999764211                      11111    1245789999999999


Q ss_pred             HHcCCCC-CcEEEeccC--chHH----------------------HHHH-HHHHcCC-EEEEEeccCCccccCHHHHHHH
Q 007454          181 DFLNISE-NDYVYDYES--EAVE----------------------AMIR-TSEKRGA-RVMSAEFSWPRLRINSEKLRKM  233 (603)
Q Consensus       181 ~~lna~~-~e~vf~~es--~sV~----------------------~~~~-~a~~~Ga-~V~~~~~~~~~g~i~~~~L~~~  233 (603)
                      ++||+++ ++++|...+  .+++                      .+.. .+++.|. +|+.++++| +..++.++    
T Consensus        59 ~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~~g~f~~~~~~~~~~~~g~~~v~~~~~~~-g~~~d~~~----  133 (378)
T PRK03080         59 ELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLAWESFGSKWATDVVKQLKLEDPRVLEADY-GSLPDLSA----  133 (378)
T ss_pred             HHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEEeCHHHHHHHHHHHhhcCCCCceEeccCC-CCCCCHhh----
Confidence            9999954 578775311  1111                      1122 3356788 899888875 45566554    


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~  313 (603)
                      +.       .+++|+++|++|.||.++|++.|.. |++|++++|||+|.+|+  .++|+++  +||+++|+|||+|+ |.
T Consensus       134 i~-------~~~~V~~~h~~t~tG~~~pi~~I~~-~~~g~~~vVDa~qs~G~--~pidv~~--iD~~~~s~~K~l~~-P~  200 (378)
T PRK03080        134 VD-------FDRDVVFTWNGTTTGVRVPVARWIG-ADREGLTICDATSAAFA--LPLDWSK--LDVYTFSWQKVLGG-EG  200 (378)
T ss_pred             cC-------CCCCEEEEecCCccceeccchhhcc-ccCCCeEEEeccccccc--CCCCHHH--CcEEEEehhhhCCC-CC
Confidence            22       2567999999999999999997755 88999999999999999  7999987  79999999999986 88


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      |+|+||++++.++.++|...|+..   +.... +.....   .+      +.+  ++.||++.+.+.++.          
T Consensus       201 G~g~l~v~~~~~~~~~p~~~~~~~---~~~~~-~~~~~~---~~------~~~--~~~~t~~tp~i~~i~----------  255 (378)
T PRK03080        201 GHGMAILSPRAVERLESYTPARPI---PKFFR-LTKGGK---AI------ENS--FKGQTINTPSMLTVE----------  255 (378)
T ss_pred             ceEEEEECHHHHHhhhcccCCCCC---chhhe-eccchH---Hh------hhh--hcCCcccCchHHHHH----------
Confidence            999999999998888876555321   10000 000000   00      112  455565555544432          


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                         ++.                        ++|+++.++ |++++.+|.+.|.++|++.|.++.        .++++++.
T Consensus       256 ---~l~------------------------~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~--------~~~~~~~~  300 (378)
T PRK03080        256 ---DYL------------------------DQLDWANSIGGLDALIARTAANASVLYDWAEKTP--------WATPLVAD  300 (378)
T ss_pred             ---HHH------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC--------CcccccCC
Confidence               122                        799999998 899999999999999999998763        36677643


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                      ...+.+.+++|++++.+.. ++..++.++++ +||.++.|.+|.                                    
T Consensus       301 ~~~~s~~i~~~~~~~~~~~-~~~~~~~~l~~-~~i~v~~g~~~~------------------------------------  342 (378)
T PRK03080        301 PATRSNTSVTLDFVDAQAA-VDAAAVAKLLR-ENGAVDIEPYRD------------------------------------  342 (378)
T ss_pred             ccccCccEEEEEcCCchHH-HHHHHHHHHHH-cCCeeccccccC------------------------------------
Confidence            2122346999999872211 33455666664 589999876542                                    


Q ss_pred             CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          553 GITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ..+.||+|+++|||.+||++|+++|++.+++
T Consensus       343 ~~~~vRis~~~~~t~~di~~l~~al~~~~~~  373 (378)
T PRK03080        343 APNGLRIWCGPTVEPADVEALTPWLDWAFER  373 (378)
T ss_pred             CCCcEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence            0157999999999999999999999987654

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=100.00  E-value=4.9e-32  Score=289.36  Aligned_cols=315  Identities=12%  Similarity=0.146  Sum_probs=219.3

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc-ccc---chHHHHHHHHHHHHHHHcCC-CCC
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL-LHG---GQESGLESAMKKRIMDFLNI-SEN  188 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~-~~g---~~~~~~~~~aR~~Ia~~lna-~~~  188 (603)
                      ++|.++.|++|++++.+++...                    +|++... ..+   ....++++++|+.+++|||+ +++
T Consensus         4 ~pGp~~~p~~V~~a~~~~~~~~--------------------~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~   63 (355)
T cd00611           4 SAGPAALPEEVLEQAQKELLDF--------------------NGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNY   63 (355)
T ss_pred             CCCCCCCCHHHHHHHHHHHhhc--------------------ccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            4788899999999998765321                    1333211 112   34568999999999999998 456


Q ss_pred             cEEEeccC--chHH-----------------------HHHHHHHHcCCEEEEEeccCCcccc-CHHHHH-HHHhhcCCCC
Q 007454          189 DYVYDYES--EAVE-----------------------AMIRTSEKRGARVMSAEFSWPRLRI-NSEKLR-KMVVSKGKKK  241 (603)
Q Consensus       189 e~vf~~es--~sV~-----------------------~~~~~a~~~Ga~V~~~~~~~~~g~i-~~~~L~-~~l~~~~~~~  241 (603)
                      +++|+..|  .+++                       .+.+.+++.|++++++++++ ++.. +..++. ..+.      
T Consensus        64 ~vvf~~gs~T~a~~~~~~~l~~~~~~~~~i~~g~~~~~~~~~a~~~g~~~~~~~~~~-~g~~~~~~~~~~~~~~------  136 (355)
T cd00611          64 KVLFLQGGATGQFAAVPLNLLGDKGTADYVVTGAWSAKAAKEAKRYGGVVVIVAAKE-EGKYTKIPDVETWDLA------  136 (355)
T ss_pred             eEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHhcCCCcEEEeccc-ccCCCCCCCHhhcCCC------
Confidence            78886431  1111                       12336678899999998762 2222 212222 2232      


Q ss_pred             CCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++||+++|.+|.||.+++    .+++.+|+.++|||+|++|+  .++|++++++  +++|+||+||  |.|+|+||+|
T Consensus       137 ~~~~lV~~~h~~t~tG~~~~----~i~~~~g~~~~VDa~qs~g~--~~idv~~~~~--~~ss~~K~lG--P~G~g~l~~~  206 (355)
T cd00611         137 PDAAYVHYCSNETIHGVEFD----EVPDTGGVPLVADMSSNILS--RPIDVSKFGV--IYAGAQKNLG--PAGVTVVIVR  206 (355)
T ss_pred             CCCCEEEEeCCcccccEEcc----eecccCCCeEEEEccccccC--CCCCHHHhCE--EEeecccccC--CCceEEEEEC
Confidence            47899999999999999854    24455999999999999999  7999998765  4477999999  8899999999


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +++++.+.|... ...       .+....+             ..  ...||+|+.+++||.                  
T Consensus       207 ~~~~~~~~~~~~-~~~-------~~~~~~~-------------~~--~~~~Tpn~~~i~~L~------------------  245 (355)
T cd00611         207 KDLLGKARKITP-SML-------NYKTHAD-------------NN--SLYNTPPTFAIYMMG------------------  245 (355)
T ss_pred             HHHHhhcccCCC-Ccc-------cHHHHHh-------------cC--CCCCCChHHHHHHHH------------------
Confidence            998877765321 111       0000000             01  137999999999998                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe-CCCCCCCCC-
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY-GPKIRFDRG-  478 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy-gp~~~~~rg-  478 (603)
                                            +||++++++ |+++|.+|.+.|+++|+++|.+++     |     +| ++..+..|. 
T Consensus       246 ----------------------aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~-----g-----l~~~~~~~~~rs~  293 (355)
T cd00611         246 ----------------------LVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSN-----G-----FYRGPVDKRARSR  293 (355)
T ss_pred             ----------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCc-----c-----ccccCCCHHHcCc
Confidence                                  799999999 899999999999999999999874     2     34 332222355 


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      .+++|++.+.   .    +..++   .+|.+|.|.+ .+..+                              .. .|+||
T Consensus       294 ~vvsf~~~~~---~----l~~~~---~~~~~r~G~~-~~~~~------------------------------~~-~g~vR  331 (355)
T cd00611         294 MNVPFRLGKE---E----LEKEF---LKEAEAAGMI-GLKGH------------------------------RS-VGGIR  331 (355)
T ss_pred             eEEEEEcCCh---h----hhHHH---HHHHHHCCCc-ccCCC------------------------------cc-cCeEE
Confidence            5699999884   1    11111   1355555542 22211                              01 26999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 007454          559 ASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       559 ~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      +|+++|||.|||++|+++|+++
T Consensus       332 ~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         332 ASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             EEccCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999985

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.97  E-value=1.1e-28  Score=267.59  Aligned_cols=334  Identities=13%  Similarity=0.067  Sum_probs=250.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +++.||...|-+..++.|++++...+..                        +.    +....++++++|+.+++++|++
T Consensus         7 ~~~~~l~~pGP~~~~~~V~~a~~~~~~~------------------------~~----~~~~~~~~~~~~~~l~~~~g~~   58 (401)
T PLN02409          7 PGRNHLFVPGPVNIPERVLRAMNRPNED------------------------HR----SPAFPALTKELLEDVKYIFKTK   58 (401)
T ss_pred             CCCceeccCCCCCCCHHHHHHhcCCCCC------------------------CC----CHHHHHHHHHHHHHHHHHhCCC
Confidence            4567899999999999999998653210                        00    1124578999999999999997


Q ss_pred             CC-cEEEe-------------------------ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 EN-DYVYD-------------------------YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~~-e~vf~-------------------------~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++ .+++.                         +++.+..| ...+++.|++++.++++| ...++.++|++.|....  
T Consensus        59 ~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~~~~~-~~~~~~~g~~v~~v~~~~-~~~~~~~~l~~~l~~~~--  134 (401)
T PLN02409         59 SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQFSLLW-IDQMQRLNFDVDVVESPW-GQGADLDILKSKLRQDT--  134 (401)
T ss_pred             CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCchhHHH-HHHHHHcCCceEEEECCC-CCCCCHHHHHHHHhhCc--
Confidence            64 44442                         12223333 567788999999999986 34588999999997410  


Q ss_pred             CCCeeEEEEeCccccccccccHHHH-HH--HHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWM-RI--AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~--a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                      .+++++|++++.+|.||.++|++.| ++  |+++|+++++|++|.+|.  .++|+.++++||+++|+||||+. |.|+|+
T Consensus       135 ~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~--~~id~~~~~~D~~~~s~~K~l~~-P~G~G~  211 (401)
T PLN02409        135 NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGA--LDFRMDEWGVDVALTGSQKALSL-PTGLGI  211 (401)
T ss_pred             CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCC--ccccccccCccEEEEcCccccCc-CCCcce
Confidence            0268999999999999999999966 57  899999999999999998  79999999999999999999876 889999


Q ss_pred             EEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          318 LFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      |+++++.++.+.+....+ ...+. ....++          +     ...  ++.+|+|+++++++.             
T Consensus       212 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~-----~g~--~~~~Tp~~~~~~al~-------------  260 (401)
T PLN02409        212 VCASPKALEASKTAKSPRVFFDWA-DYLKFY----------K-----LGT--YWPYTPSIQLLYGLR-------------  260 (401)
T ss_pred             eEECHHHHHHHhcCCCCCeecCHH-HHHHHH----------h-----cCC--CCCCCccHHHHHHHH-------------
Confidence            999998876665421110 00000 000000          0     011  246799999998887             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .+++++.+.|++++.+|.+.|.++|++.|.++      |   +++++|.. ..
T Consensus       261 ---------------------------~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~------g---~~~~~~~~-~~  303 (401)
T PLN02409        261 ---------------------------AALDLIFEEGLENVIARHARLGEATRLAVEAW------G---LKLCTKKP-EW  303 (401)
T ss_pred             ---------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCCh-hh
Confidence                                       69999989999999999999999999999875      2   67888643 23


Q ss_pred             CC-CEEEEEEc-cCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          477 RG-PALAFNVF-DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       477 rg-~ivsFnv~-~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                      |. .+++|+++ ++++    ..++++|++++||.++.|..                                    ....
T Consensus       304 ~s~~v~~~~~p~~~~~----~~l~~~l~~~~~i~i~~G~~------------------------------------~~~~  343 (401)
T PLN02409        304 RSDTVTAVVVPEGIDS----AEIVKNAWKKYNLSLGLGLN------------------------------------KVAG  343 (401)
T ss_pred             cccceEEEeCCCCCCH----HHHHHHHHHhCCEEEEcCCC------------------------------------cccC
Confidence            44 45668775 3332    23456777899999987722                                    1123


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          555 TVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +.+|||...|+|.+||.+++.+|.+.|++
T Consensus       344 ~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        344 KVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999998876

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.96  E-value=9.6e-29  Score=264.55  Aligned_cols=324  Identities=11%  Similarity=0.080  Sum_probs=224.5

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC-C
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE-N  188 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~-~  188 (603)
                      .+|=++|.+++|+.|++++...+....        +.       +.+.+.-.| ......++++++|++++++||+++ .
T Consensus         4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~--------~~-------~~g~~~~~h-r~~~f~~~~~~~~~~l~~l~~~~~~~   67 (360)
T PRK05355          4 VYNFSAGPAMLPEEVLEQAQQELLDWN--------GS-------GMSVMEISH-RSKEFEAVAEEAEADLRELLNIPDNY   67 (360)
T ss_pred             eeeccCCCCCCCHHHHHHHHHHhhccc--------cC-------CccccccCC-CCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            455579999999999999876542110        00       001110001 112235899999999999999844 4


Q ss_pred             cEEEeccCc-----------------------h--HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHH-HHhhcCCCCC
Q 007454          189 DYVYDYESE-----------------------A--VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK-MVVSKGKKKK  242 (603)
Q Consensus       189 e~vf~~es~-----------------------s--V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~-~l~~~~~~~~  242 (603)
                      +++|...+.                       .  -..+.+.+++.|.. ..+..+|..+..+..++++ .|.      +
T Consensus        68 ~v~~~~gsgt~~~Ea~~~nl~~~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~------~  140 (360)
T PRK05355         68 KVLFLQGGASLQFAMVPMNLLGGGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS------D  140 (360)
T ss_pred             EEEEEcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCC------C
Confidence            566643211                       0  12246778888965 6666653345555555555 453      2


Q ss_pred             CeeEEEEeCccccccccc-cHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARY-PYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~-pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++|+++|..+.||+++ |+..+     +|++++|||+|++|+  .++|++++  ||+++|+||+||  |.|+|+||+|
T Consensus       141 ~~~~V~~th~eTstGv~~~~i~~i-----~g~l~vVDavss~g~--~~idv~~~--d~~~~ssqK~lg--P~Glg~l~~s  209 (360)
T PRK05355        141 DAAYVHYTSNETIDGTEFHELPDT-----GDVPLVADMSSDILS--RPIDVSKF--GLIYAGAQKNIG--PAGLTIVIVR  209 (360)
T ss_pred             CCCEEEEccCCCcceEecCccccc-----CCCcEEEEcCccccC--ccCCHHHc--cEEEEecccccc--CCceEEEEEC
Confidence            589999999999999999 77644     899999999999999  79999976  799999999999  8899999999


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +++++.+.|. .+++.++..     +         .+      ..  .-.||+|+.++++|.                  
T Consensus       210 ~~~l~~~~~~-~~~~~~~~~-----~---------~~------~~--~~~~Tp~~~~i~aL~------------------  248 (360)
T PRK05355        210 EDLLGRALPS-IPSMLDYKT-----H---------AD------ND--SMYNTPPTFAIYLAG------------------  248 (360)
T ss_pred             HHHHhhcccC-CChHHHHHH-----H---------Hh------cC--CccCCCcHHHHHHHH------------------
Confidence            9998877764 233221110     0         00      00  136999999999988                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC-C
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG-P  479 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg-~  479 (603)
                                            ++|+++.++ |++++.+|.+.|+++|+++|+++.        ++..+.+.  ..|. .
T Consensus       249 ----------------------~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~--------~~~~~~~~--~~rs~~  296 (360)
T PRK05355        249 ----------------------LVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSD--------FYRNPVAP--EDRSRM  296 (360)
T ss_pred             ----------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC--------CcccCCCh--hhcCCc
Confidence                                  799999999 899999999999999999999862        12222221  2344 6


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      +++|++++.    +....+.      ++.++.|.+|..+.                                ...|.||+
T Consensus       297 v~sf~~~~~----~~~~~~~------~~~~~~Gi~~~~~~--------------------------------~~~g~vRi  334 (360)
T PRK05355        297 NVPFTLADE----ELDKKFL------AEAKAAGLVGLKGH--------------------------------RSVGGMRA  334 (360)
T ss_pred             EEEEEcCCh----HHHHHHH------HHHHHCCCcccCCC--------------------------------CccCcEEE
Confidence            799999874    1111121      23334444552110                                01268999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 007454          560 SLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      |+++|||.|||++|+++|++++.
T Consensus       335 S~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        335 SIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999764

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.96  E-value=4.9e-28  Score=266.60  Aligned_cols=324  Identities=15%  Similarity=0.090  Sum_probs=233.3

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHH-HHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~-aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-..+|+.|++++...++..                 |..+||++.+..|....+.+++ +|++++++||++++++.|+
T Consensus        41 ~sen~~s~~v~~~~~~~l~~~-----------------y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~  103 (452)
T PTZ00094         41 ASENFTSRAVLECLGSCFTNK-----------------YAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVN  103 (452)
T ss_pred             cccccCCHHHHHHhcchhhcc-----------------ccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceee
Confidence            777789999999987654321                 2238999998888887777774 9999999999998887665


Q ss_pred             c----cCchHHHHHHHHHHcCCEEEE-------------------------------EeccCCccccCHHHHHHHHhhcC
Q 007454          194 Y----ESEAVEAMIRTSEKRGARVMS-------------------------------AEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       194 ~----es~sV~~~~~~a~~~Ga~V~~-------------------------------~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      -    .+++...++....+.|.+|..                               .+++ ++|.++.++|++.+... 
T Consensus       104 ~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~~g~id~~~L~~~l~~~-  181 (452)
T PTZ00094        104 VQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVN-EKGLIDYDKLEELAKAF-  181 (452)
T ss_pred             cCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccC-CCCCcCHHHHHHHHHHh-
Confidence            2    112222222222223433332                               2233 25789999999999631 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCC---CCCcEEEEcccccCCCCCCc
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSL---VRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~---~~~Dflv~S~hK~fG~~P~G  314 (603)
                          +++++++. .| ++|.++|++.|+ +|+++|++++||++|.+|+  .++|+..   .++||+++|+||||++ |.|
T Consensus       182 ----~~~lvi~~-~s-~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~--i~~~~~~~~~~~~D~l~~S~hK~l~G-P~G  252 (452)
T PTZ00094        182 ----RPKLIIAG-AS-AYPRDIDYKRFREICDSVGAYLMADIAHTSGL--VAAGVLPSPFPYADVVTTTTHKSLRG-PRS  252 (452)
T ss_pred             ----CCCEEEEe-CC-CCCCccCHHHHHHHHHHcCCEEEEeccchhcc--ccCCCCCCCCCCCcEEEcCCccCCCC-CCc
Confidence                35676654 44 599999999775 8999999999999999998  6665432   3699999999998855 998


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                       |+|++++...+.+.+.. ..         .           +.     +.   + .|+++..++++++           
T Consensus       253 -g~l~~~~~~~~~l~~~~-~~---------~-----------~~-----p~---~-~G~~~~~~iaal~-----------  290 (452)
T PTZ00094        253 -GLIFYRKKVKPDIENKI-NE---------A-----------VF-----PG---L-QGGPHNHQIAAIA-----------  290 (452)
T ss_pred             -eEEEEecccchHHHHhh-cc---------c-----------cC-----CC---C-CCCchHHHHHHHH-----------
Confidence             88998887654343211 00         0           00     11   2 4788888988887           


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR  474 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~  474 (603)
                                                   .+++++...+++.+.+++..|+++|.+.|.+.      |   ++++++.. 
T Consensus       291 -----------------------------~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~------g---~~v~~~~~-  331 (452)
T PTZ00094        291 -----------------------------VQLKEVQSPEWKEYAKQVLKNAKALAAALEKR------G---YDLVTGGT-  331 (452)
T ss_pred             -----------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC------C---cEEecCCC-
Confidence                                         68888877788999999999999999999874      2   45666432 


Q ss_pred             CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEE-eeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISL-SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~l-r~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                      ..+..+|+|+..+.+     ...+..+++++||.+ +.|..|....                                ..
T Consensus       332 ~~~~~~v~~~~~~~~-----~~~~~~~L~~~gI~vs~~~~p~~~~~--------------------------------~~  374 (452)
T PTZ00094        332 DNHLVLVDLRPFGIT-----GSKMEKLLDAVNISVNKNTIPGDKSA--------------------------------LN  374 (452)
T ss_pred             CCceEeecCCcCCCC-----HHHHHHHHHHCCcEEecccCCCCCcC--------------------------------CC
Confidence            235567777777644     455777778899999 5666665321                                11


Q ss_pred             CCEEEEecCCCCC----HHHHHHHHHHHHHHHhhh
Q 007454          554 ITVVTASLGYLAN----FEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       554 ~g~VR~Slg~~tt----~eDVd~l~~~l~~~l~~~  584 (603)
                      .++||+|+++|||    ++||++++++|++.+...
T Consensus       375 ~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~  409 (452)
T PTZ00094        375 PSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA  409 (452)
T ss_pred             CCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            3699999999998    999999999999998863

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.96  E-value=2.2e-27  Score=252.99  Aligned_cols=311  Identities=12%  Similarity=0.146  Sum_probs=217.4

Q ss_pred             CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccch---HHHHHHHHHHHHHHHcCCCC-CcEEE
Q 007454          118 GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQ---ESGLESAMKKRIMDFLNISE-NDYVY  192 (603)
Q Consensus       118 tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~---~~~~~~~aR~~Ia~~lna~~-~e~vf  192 (603)
                      ++.|.+|++++.+++.+.                    .|.+. .+..+.+   ..++++++|+.+.++||++. .+++|
T Consensus         1 ~~~p~~v~~~~~~~~~~~--------------------~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~   60 (349)
T TIGR01364         1 AALPEEVLEQAQKELLNF--------------------NGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLF   60 (349)
T ss_pred             CCCCHHHHHHHHHHHhCc--------------------cCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEE
Confidence            468999999988865421                    12211 1112222   34899999999999999854 46766


Q ss_pred             eccCc--hH-----------------------HHHHHHHHHcCCEEEEEecc----CCccccCHHHHHHHHhhcCCCCCC
Q 007454          193 DYESE--AV-----------------------EAMIRTSEKRGARVMSAEFS----WPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       193 ~~es~--sV-----------------------~~~~~~a~~~Ga~V~~~~~~----~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ...|.  ++                       ..+.+.+++.|+ +..+..+    | .-.+++++++  +      +++
T Consensus        61 ~~gsgT~a~ea~~~nl~~~~~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~-~~~~~~~~~~--~------~~~  130 (349)
T TIGR01364        61 LQGGATGQFAAVPLNLLAEGKVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNY-TKIPDPSTWE--I------SED  130 (349)
T ss_pred             EcCCchHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCC-CCCCCHHhcC--C------CCC
Confidence            53321  11                       123567788898 7776643    3 2233444433  1      136


Q ss_pred             eeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          244 RGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +++|++.|..+.||+.+|    .+++.++++++|||+|++|+  .++|++++  ||+++|+||+||  |.|+|+|+++++
T Consensus       131 ~~~v~~th~ETstGv~~~----~l~~~~~~l~iVDavss~g~--~~id~~~~--d~~~~ssqK~lg--P~Glg~l~~s~~  200 (349)
T TIGR01364       131 AAYVHYCANETIHGVEFR----ELPDVKNAPLVADMSSNILS--RPIDVSKF--GLIYAGAQKNIG--PAGLTVVIVRKD  200 (349)
T ss_pred             CCEEEEcCCCCcccEecc----eecccCCCeEEEEccccccC--ccCCHHHc--cEEEEecccccC--CCceEEEEECHH
Confidence            899999999999999988    55666899999999999999  79999975  699999999999  889999999999


Q ss_pred             CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454          324 TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA  403 (603)
Q Consensus       324 ~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~  403 (603)
                      +++.++|.. ....       +++...+             ..  .-.||||+.++++|.                    
T Consensus       201 ~~~~~~~~~-~~~~-------~~~~~~~-------------~~--~~~~Tp~~~~i~al~--------------------  237 (349)
T TIGR01364       201 LLGRASRIT-PSML-------NYKIHAE-------------ND--SMYNTPPTFAIYVSG--------------------  237 (349)
T ss_pred             HHhhcccCC-CCcc-------hHHHHHh-------------cC--CCCCCCcHHHHHHHH--------------------
Confidence            987776621 1111       1000000             00  125899999999988                    


Q ss_pred             hhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC-CEE
Q 007454          404 DSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG-PAL  481 (603)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg-~iv  481 (603)
                                          ++|++++++ |++++.+|.+.|+++|++.|++++     |   +.++.. .+..|. .++
T Consensus       238 --------------------~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~-----g---l~~~~~-~~~~rs~~v~  288 (349)
T TIGR01364       238 --------------------LVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSN-----G---FYRNPV-DPRNRSRMNV  288 (349)
T ss_pred             --------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----C---eeccCC-CHHHcCCeEE
Confidence                                799999999 799999999999999999999873     2   333321 112354 679


Q ss_pred             EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454          482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL  561 (603)
Q Consensus       482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl  561 (603)
                      +|++++.   .+.. .+.+.+.++||++..|..                                      ..|+||+|+
T Consensus       289 sf~~~~~---~~~~-~~~~~~~~~Gi~~~~~~~--------------------------------------~~g~vRvS~  326 (349)
T TIGR01364       289 VFTLGNE---ELEK-RFLKEAEERGLVSLKGHR--------------------------------------SVGGMRASI  326 (349)
T ss_pred             EEecCCh---hHhH-HHHHHHHHCCCcccCCcc--------------------------------------ccCeeEEEC
Confidence            9999874   1212 222234456665443311                                      126899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 007454          562 GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ++|||.|||++|+++|++++.
T Consensus       327 ~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       327 YNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             cCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998764

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.96  E-value=3.2e-26  Score=249.89  Aligned_cols=332  Identities=13%  Similarity=0.008  Sum_probs=230.6

Q ss_pred             CCceeeecCC--------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHH
Q 007454          107 SNHTCLDYFG--------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR  178 (603)
Q Consensus       107 ~~~vYLDyaa--------~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~  178 (603)
                      ...+||||++        +|++.+.+.+.+..++..                   ..+||++.   |..+ ++++++|+.
T Consensus        32 ~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~-------------------~~~np~s~---~~~~-~le~~~~~~   88 (431)
T TIGR01788        32 HDELSLDGNPRLNLATFVTTWMEPEARKLMDETINK-------------------NMIDKDEY---PQTA-EIENRCVNM   88 (431)
T ss_pred             HHHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhc-------------------CCCCcccC---ccHH-HHHHHHHHH
Confidence            3468899999        899888888887765321                   23677663   4444 999999999


Q ss_pred             HHHHcCCC-C-CcEEEec-----cCc--hH------------------------------HHHHHHHHHcCCEEEEEecc
Q 007454          179 IMDFLNIS-E-NDYVYDY-----ESE--AV------------------------------EAMIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       179 Ia~~lna~-~-~e~vf~~-----es~--sV------------------------------~~~~~~a~~~Ga~V~~~~~~  219 (603)
                      |+++||++ + +++.|..     |++  ++                              ..+.+.++..|.+|++++++
T Consensus        89 la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d  168 (431)
T TIGR01788        89 LADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMD  168 (431)
T ss_pred             HHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecC
Confidence            99999998 4 5787742     221  11                              11122333458888899987


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhC------CcEEEEecccc-------CCC
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEN------DWHILIDACAL-------GPK  285 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~------g~~vlvDAaq~-------~~~  285 (603)
                      ..+++++.++|++.|.+      +|.||++++.+|+||+++|++.|. +|+++      |+++||||+|.       .++
T Consensus       169 ~~~~~vd~~~L~~~i~~------~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~  242 (431)
T TIGR01788       169 PGRYVIDPEQVVEAVDE------NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD  242 (431)
T ss_pred             CCceeeCHHHHHHHHhh------CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC
Confidence            42358999999999974      689999999999999999999775 88998      89999999999       565


Q ss_pred             CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC--CcCc--CCCCCCCc-eeccccccccccccccCCCCCCcc
Q 007454          286 DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST--VPIL--VDNTSSGM-VSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       286 ~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~--~~~L--~p~~~gG~-v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                        .++|+...++|.+++|+|||+.+ |.|+|+||+|+..  ...+  .+.+.||. .+        +        .+   
T Consensus       243 --~~~~~~~~~~DSis~s~HK~~~~-P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~--------~--------t~---  300 (431)
T TIGR01788       243 --LEWDFRLPRVKSINVSGHKYGLV-YPGVGWVIWRDEEALPEELIFHVNYLGGDEPT--------F--------TL---  300 (431)
T ss_pred             --chhhcCCCCceEEEECchhccCC-CCCcEEEEEeChHHcchhheecccccCCCCCC--------c--------ce---
Confidence              56777777899999999999733 9999999999862  1212  12244421 10        0        00   


Q ss_pred             cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454          361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR  440 (603)
Q Consensus       361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r  440 (603)
                                .|+-+..+++++=                                        ..+..+-..|+.++.++
T Consensus       301 ----------~~sR~g~~al~~w----------------------------------------~~l~~lG~~G~~~i~~~  330 (431)
T TIGR01788       301 ----------NFSRPANQVIAQY----------------------------------------YNFLRLGREGYRKIMQN  330 (431)
T ss_pred             ----------ecCchHHHHHHHH----------------------------------------HHHHHhcHHHHHHHHHH
Confidence                      1111111222111                                        23444444689999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCC
Q 007454          441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS  520 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~  520 (603)
                      ...|++||.++|.+++        .++|++|.   .+.++|+|++.+.+...++...+...+++.||.+.+   |..+. 
T Consensus       331 ~~~la~~l~~~L~~~~--------~~el~~~~---~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~---~~~p~-  395 (431)
T TIGR01788       331 SLDVARYLAEEIAKLG--------PFEIISDG---SGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPA---YTLPK-  395 (431)
T ss_pred             HHHHHHHHHHHHHhCC--------CEEEeeCC---CCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccC---CCCCC-
Confidence            9999999999998763        38999873   368999999986432234555565555677886531   10000 


Q ss_pred             chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                   .-.+.-++|+.+-...+.+.+++|++.|.+.+..
T Consensus       396 -----------------------------~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~  429 (431)
T TIGR01788       396 -----------------------------NAEDIVVMRIVVREGFSRDLAELLIEDIEAALAY  429 (431)
T ss_pred             -----------------------------ccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence                                         0012247999998899999999999999887653

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.95  E-value=3.9e-26  Score=242.60  Aligned_cols=322  Identities=16%  Similarity=0.123  Sum_probs=231.3

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc-EEE
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND-YVY  192 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e-~vf  192 (603)
                      ++|..+.|+.+++++.+.+.                          + + .+....++++++|+.+++++|+++++ +++
T Consensus         4 ~~~~~~~~~~v~~a~~~~~~--------------------------~-~-~~~~~~~~~~~~~~~la~~~g~~~~~~~~~   55 (356)
T cd06451           4 IPGPSNVPPRVLKAMNRPML--------------------------G-H-RSPEFLALMDEILEGLRYVFQTENGLTFLL   55 (356)
T ss_pred             cCCCcCCCHHHHHHhCCCcc--------------------------C-C-CCHHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            57777888999999754211                          0 0 11234577899999999999996544 433


Q ss_pred             ec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          193 DY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       193 ~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      ..                         .+-+.. +...++..|+++..++.+ +++.++.++|++.+.+     .+++++
T Consensus        56 ~~~~t~al~~~~~~~~~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~i~~-----~~~~~v  128 (356)
T cd06451          56 SGSGTGAMEAALSNLLEPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKP-WGEAVSPEEIAEALEQ-----HDIKAV  128 (356)
T ss_pred             ecCcHHHHHHHHHHhCCCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecC-CCCCCCHHHHHHHHhc-----cCCCEE
Confidence            21                         111111 345677889999999987 3678899999999863     258899


Q ss_pred             EEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          248 VFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      .+++.+|.||.++|++.|. +|+++|+++++|++|.+|.  .++++..+++|++++|+|||||. |.|+|+|+++++.++
T Consensus       129 ~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~  205 (356)
T cd06451         129 TLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGG--EPFRMDEWGVDVAYTGSQKALGA-PPGLGPIAFSERALE  205 (356)
T ss_pred             EEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccC--ccccccccCccEEEecCchhccC-CCCcceeEECHHHHH
Confidence            9999999999999999775 8899999999999998887  57888888999999999999997 889999999988766


Q ss_pred             CcCC--CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhh
Q 007454          327 ILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEAD  404 (603)
Q Consensus       327 ~L~p--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~  404 (603)
                      .+.+  ...+..... .....++               ...+  ++.||+++..++++.                     
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~~---------------~~~~--~~~~t~~~~~~~a~~---------------------  246 (356)
T cd06451         206 RIKKKTKPKGFYFDL-LLLLKYW---------------GEGY--SYPHTPPVNLLYALR---------------------  246 (356)
T ss_pred             HHHhcCCCCceeecH-HHHHhhh---------------cccC--CCCCCChHHHHHHHH---------------------
Confidence            5542  111100000 0000001               0011  467889988877765                     


Q ss_pred             hhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEE
Q 007454          405 SIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN  484 (603)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFn  484 (603)
                                         ++++++.+.|++.+.++.+.+++++.+.|.++      |   ++++++.  ..+.+++.|-
T Consensus       247 -------------------aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--~~~~~~~~~~  296 (356)
T cd06451         247 -------------------EALDLILEEGLENRWARHRRLAKALREGLEAL------G---LKLLAKP--ELRSPTVTAV  296 (356)
T ss_pred             -------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCc--ccCCCceEEE
Confidence                               68888888899999999999999999999875      2   5666653  2356666543


Q ss_pred             EccCCCCccCHHHHH-HHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCC
Q 007454          485 VFDWKREKIEPVLVQ-KLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGY  563 (603)
Q Consensus       485 v~~~~g~~v~~~~V~-~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~  563 (603)
                      ..+ ++  ++...+. +|.++.||.++.|..|.                                    ..+.||+|++.
T Consensus       297 ~~~-~~--~~~~~~~~~L~~~~gI~~~~g~~~~------------------------------------~~~~iRis~~~  337 (356)
T cd06451         297 LVP-EG--VDGDEVVRRLMKRYNIEIAGGLGPT------------------------------------AGKVFRIGHMG  337 (356)
T ss_pred             ECC-CC--CCHHHHHHHHHHhCCEEEecccccc------------------------------------cCCEEEEecCC
Confidence            322 12  2334444 45444499998775321                                    12599999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 007454          564 LANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       564 ~tt~eDVd~l~~~l~~~l  581 (603)
                      ++|.|||++++++|++++
T Consensus       338 ~~~~e~v~~~~~~l~~~~  355 (356)
T cd06451         338 EATREDVLGVLSALEEAL  355 (356)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.95  E-value=1.2e-26  Score=248.65  Aligned_cols=291  Identities=12%  Similarity=0.074  Sum_probs=202.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCC-cEEEeccC--chHHHH---------------------HHHHHH--cCCEEEEEeccC
Q 007454          167 QESGLESAMKKRIMDFLNISEN-DYVYDYES--EAVEAM---------------------IRTSEK--RGARVMSAEFSW  220 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna~~~-e~vf~~es--~sV~~~---------------------~~~a~~--~Ga~V~~~~~~~  220 (603)
                      ...++++++|++++++||++++ +++|...+  .+++.+                     ...+..  .+.++..++++|
T Consensus        38 ~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~~~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~  117 (361)
T TIGR01366        38 PVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIEKKSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADP  117 (361)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcccccccEEecCHHHHHHHHHHHhhhccCCceEEecCC
Confidence            3468999999999999999654 78886442  122111                     122222  122566666665


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL  300 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dfl  300 (603)
                       ...++.     .+      .++++||+++|.+|.||+++|++.|  +|++|+.++|||+|++|+  .++|++.  +||+
T Consensus       118 -~~~~~~-----~~------~~~~~lV~~~h~et~tG~~~pi~~I--~~~~g~~~iVDavqs~g~--~~idv~~--~D~~  179 (361)
T TIGR01366       118 -GSAPEP-----QA------DPGVDVIAWAHNETSTGVAVPVRRP--EGSDDALVVIDATSGAGG--LPVDIAE--TDVY  179 (361)
T ss_pred             -CCCCCC-----cc------CCCCCEEEEcccCCccceecccccc--cccCCCeEEEEcCccccC--CCCCHHH--CCEE
Confidence             222221     12      2479999999999999999999866  588999999999999999  7999986  8999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC---CCChh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA---TNTFS  377 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G---T~n~~  377 (603)
                      ++|+||+||. |.|++++++++++++.+++...||...  |.... +  ..    .++      ..  ++.+   |+++.
T Consensus       180 ~~s~~K~lg~-~~Gl~~~~~s~~~~~~~~~~~~~~~~~--p~~~d-~--~~----~~~------~~--~~~~t~~tp~i~  241 (361)
T TIGR01366       180 YFAPQKNFAS-DGGLWLAIMSPAALERIEAIAASGRWV--PEFLS-L--PT----AVD------NS--LKNQTYNTPAIA  241 (361)
T ss_pred             EEEchhhcCC-CCceEEEEECHHHHhhhhcccCCCCCC--chhhh-H--HH----HHh------cc--ccCCCCCCchHH
Confidence            9999999995 679999999999988888766654310  11100 0  00    000      11  2344   45555


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      .++++.                                        ++++++.++ |++.+.+|.+.|.+++++.|.++.
T Consensus       242 ~i~~l~----------------------------------------~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~  281 (361)
T TIGR01366       242 TLALLA----------------------------------------EQIDWMNGNGGLDWAVARTADSSSRLYSWAQERP  281 (361)
T ss_pred             HHHHHH----------------------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            555665                                        799999999 699999999999999999999863


Q ss_pred             CCCCCCCceEEEeCCCC--CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          457 HPNTEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~--~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                              .+++|.+..  ...+.++|+|. .+     +++..+...++.+||.+..|..                    
T Consensus       282 --------~~~~~~~~~~~~s~~v~~v~~~-~g-----~~~~~v~~~L~~~gI~i~~~~~--------------------  327 (361)
T TIGR01366       282 --------YATPFVTDPGKRSQVVGTIDFV-DD-----IDAATVAKILRANGIVDTEPYR--------------------  327 (361)
T ss_pred             --------CcccCCCChhhcccceEEEECC-Cc-----cCHHHHHHHHHHCCCeeccCcc--------------------
Confidence                    255555321  12233566663 44     4566665555667999854310                    


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      ....++||||++.|||.+||++|+++|++.+++
T Consensus       328 ----------------~l~~~~vRis~~~~~t~~di~~l~~al~~~~~~  360 (361)
T TIGR01366       328 ----------------KLGRNQLRVAMFPAIDPDDVEALTECVDWVVER  360 (361)
T ss_pred             ----------------ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence                            011248999999999999999999999997653

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.94  E-value=7.9e-25  Score=233.69  Aligned_cols=300  Identities=12%  Similarity=0.103  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCC--cEEEecc----------------------Cch-HHH-HHHHHHHcCCEEEEEeccCC
Q 007454          168 ESGLESAMKKRIMDFLNISEN--DYVYDYE----------------------SEA-VEA-MIRTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~--e~vf~~e----------------------s~s-V~~-~~~~a~~~Ga~V~~~~~~~~  221 (603)
                      ..++++++|+.+++++|++++  +++++..                      ++. ... +...+++.|++++.++.++ 
T Consensus        33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~-  111 (363)
T TIGR02326        33 YNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE-  111 (363)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence            467889999999999999764  5665321                      111 111 2356778899999999874 


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL  300 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dfl  300 (603)
                      ++.++.++|+++|..+    ++++++++++.+|.||.++|++.| ++||++|+++++|++|.+|.  .++|+..+++||+
T Consensus       112 ~~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~--~~~~~~~~~~D~~  185 (363)
T TIGR02326       112 VEPPDVVEVEAILAAD----PAITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGG--IPIDIAELHIDYL  185 (363)
T ss_pred             CCCCCHHHHHHHHhhC----CCccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccC--cccchhhcCccEE
Confidence            7789999999998742    356789999999999999999865 58999999999999999998  6999999999999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      ++|+|||+++ |.|+|+|+++++.++.+.+...+-....    ...|..       ++.   .+.   ....|++.++++
T Consensus       186 ~~s~~K~l~~-p~G~G~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~---~~~---~~~ft~~~~~~~  247 (363)
T TIGR02326       186 ISSANKCIQG-VPGFGFVIARQAELAACKGNARSLSLDL----YDQWRC-------MED---NHG---KWRFTSPTHVVH  247 (363)
T ss_pred             EecCcccccc-CCcceEEEECHHHHHHhhcCCCceeecH----HHHHHH-------Hhc---cCC---CCCCCCcHHHHH
Confidence            9999998754 8899999999887655543221100000    000100       000   000   123367788887


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      ++.                                        ++++.+... |++++.++.+.++++|++.|.++    
T Consensus       248 al~----------------------------------------~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~----  283 (363)
T TIGR02326       248 AFA----------------------------------------QALLELEKEGGVAARHQRYQQNQKTLVAGMRAL----  283 (363)
T ss_pred             HHH----------------------------------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc----
Confidence            776                                        577766444 69999999999999999999876    


Q ss_pred             CCCCceEEEeCCCCCCCCCCE-EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~i-vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                        |   +.++.+.  ..+.++ ++|.+++..  .+....+.+.+.++||.++.|..+                       
T Consensus       284 --g---~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~v~~~L~~~gi~v~~g~~~-----------------------  331 (363)
T TIGR02326       284 --G---FEPLLDD--EIQSPIITSFYSPEDP--DYRFADFYQRLKEQGFVIYPGKVS-----------------------  331 (363)
T ss_pred             --C---CeeccCc--ccCCceEEEEECCCCC--CCCHHHHHHHHHHCCEEEECCcCC-----------------------
Confidence              2   4455553  234554 567776421  123344555556779999876321                       


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                    ....+|+|+..++|.|||++++++|++.|+
T Consensus       332 --------------~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       332 --------------QVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             --------------CCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence                          014799998778999999999999998763

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PRK02769 histidine decarboxylase; Provisional

Probab=99.94  E-value=1.7e-24  Score=233.08  Aligned_cols=314  Identities=15%  Similarity=0.090  Sum_probs=233.1

Q ss_pred             CcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          103 QLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       103 ~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      +++.++..|+=|.....++++.++.+..+..+                   ..+||.+.+.+|..+.++++++++.++++
T Consensus        17 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~-------------------n~gnp~~~~~~g~~~~~~e~~~~~~~a~l   77 (380)
T PRK02769         17 YLRHNQYFNVGYPEAADFDYSALKRFFSFSIN-------------------NCGDPYSKSNYPLNSFDFERDVMNFFAEL   77 (380)
T ss_pred             HHHHhhhcccCCCchhhcCHHHHHHHHHhhhc-------------------cCCCccccCCCCCChHHHHHHHHHHHHHH
Confidence            34435567788888888888888877664321                   23788888888888889999999999999


Q ss_pred             cCCCCCcE--EEec---------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454          183 LNISENDY--VYDY---------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM  233 (603)
Q Consensus       183 lna~~~e~--vf~~---------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~  233 (603)
                      ||++++++  +|+.                           +|.|+   ...++..|.++..++.+ +++++|.++|+++
T Consensus        78 ~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv---~ka~~~lg~~~~~V~~~-~~g~id~~~L~~~  153 (380)
T PRK02769         78 FKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSV---SKIARLLRIKSRVITSL-PNGEIDYDDLISK  153 (380)
T ss_pred             hCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehH---HHHHHHcCCCCceeccC-CCCcCcHHHHHHH
Confidence            99987774  4432                           22222   23344456667777776 6899999999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCC---cEEEEeccccCCCCCC-------CCCCCCCCCcEEEE
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEND---WHILIDACALGPKDMD-------SFGLSLVRPDFLIC  302 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g---~~vlvDAaq~~~~~m~-------~ldls~~~~Dflv~  302 (603)
                      |..+   +.+|.||++++.+|+||.+.|++.|. +|+++|   +++||||||.+++  .       ++|+.. ++|++++
T Consensus       154 i~~~---~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~--~p~~~~~~~~d~~~-~vDsis~  227 (380)
T PRK02769        154 IKEN---KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMI--LPFVNNPPPFSFAD-GIDSIAI  227 (380)
T ss_pred             HHhC---CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEeccccee--ecccCccccCCccC-CCCEEEE
Confidence            9853   34689999999999999999999764 899998   6999999999987  5       488877 9999999


Q ss_pred             cccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          303 SFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       303 S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      |+|||+|. |.|+|+||+|++....+.+.     +       .+. ...             ..  ...||.|..+++++
T Consensus       228 s~HK~~~~-P~g~G~l~~r~~~~~~~~~~-----~-------~yl-~~~-------------d~--t~~GSR~g~~~l~l  278 (380)
T PRK02769        228 SGHKFIGS-PMPCGIVLAKKKYVERISVD-----V-------DYI-GSR-------------DQ--TISGSRNGHTALLL  278 (380)
T ss_pred             CCcccCCC-CCCcEEEEEehhhhhhcccC-----c-------ccc-CCC-------------CC--CccCCCCcHHHHHH
Confidence            99999887 99999999999876544431     1       111 000             00  24799998888877


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g  462 (603)
                      -                                        .+|+++...|+.++.++...|+++|.++|.++      |
T Consensus       279 w----------------------------------------~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~------g  312 (380)
T PRK02769        279 W----------------------------------------AAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN------G  312 (380)
T ss_pred             H----------------------------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC------C
Confidence            6                                        68888888899999999999999999999874      2


Q ss_pred             CceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454          463 NALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS  542 (603)
Q Consensus       463 ~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (603)
                         +++.+.    ....+|+|.-++.       . +   .  .|-+|.+                               
T Consensus       313 ---~~~~~~----p~~~~v~f~~~~~-------~-~---~--~~w~l~~-------------------------------  341 (380)
T PRK02769        313 ---IPAWRN----PNSITVVFPCPSE-------R-I---W--KKWHLAT-------------------------------  341 (380)
T ss_pred             ---CEEEcC----CCceEEEEcCCCH-------H-H---H--hCeeEcc-------------------------------
Confidence               445553    2467898875541       1 1   1  2322210                               


Q ss_pred             ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                               . ...+|+.+-...|.|.||+|++-|.+.+
T Consensus       342 ---------~-~~~~hi~~~~~~~~~~~~~f~~dl~~~~  370 (380)
T PRK02769        342 ---------S-GNQAHIITMPHHNKQQIDSLIDELIFDL  370 (380)
T ss_pred             ---------c-CCEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence                     1 1378888889999999999998887654

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.92  E-value=4.2e-23  Score=220.66  Aligned_cols=300  Identities=13%  Similarity=0.084  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCC--cEEEecc----------------------CchH--HHHHHHHHHcCCEEEEEeccCCc
Q 007454          169 SGLESAMKKRIMDFLNISEN--DYVYDYE----------------------SEAV--EAMIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~--e~vf~~e----------------------s~sV--~~~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                      .+.++++|+.+++++|++++  +++++-.                      .+..  ..+...+++.|+++..++.+| +
T Consensus        36 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~-~  114 (368)
T PRK13479         36 NALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGE-D  114 (368)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCC-C
Confidence            35789999999999999763  3434211                      0111  112466788899999999985 5


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                      +.++.++|++.|..+    ++++++.+++.+|.||.++|++.| ++|+++|+++++|++|..+.  .++|+..+++|+++
T Consensus       115 ~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~--~~~~~~~~~~d~~v  188 (368)
T PRK13479        115 EPPDAAEVEAALAAD----PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGA--IPIDIAELGIDALI  188 (368)
T ss_pred             CCCCHHHHHHHHHhC----CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCC--ccccccccCceEEE
Confidence            678999999998642    357899999999999999999865 58999999999999999887  68999999999999


Q ss_pred             EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      +|+|||+++ |.|+|+++++++.++.+.+....-..+..    ..+...      ..      ..  ....|+|+.++++
T Consensus       189 ~s~~K~l~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~------~~--~~~~t~~~~~~~~  249 (368)
T PRK13479        189 SSANKCIEG-VPGFGFVIARRSELEACKGNSRSLSLDLY----DQWAYM------EK------TG--QWRFTPPTHVVAA  249 (368)
T ss_pred             ecCcccccc-CCCceEEEECHHHHHHhhcCCCCeeecHH----HHHhhh------cc------cC--CCCCCCcHHHHHH
Confidence            999997643 88999999999876655532111000000    000000      00      00  0123788888888


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      +.                                        ++++.+.+. +++++.++.+.++++|++.|.++     
T Consensus       250 l~----------------------------------------~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-----  284 (368)
T PRK13479        250 FY----------------------------------------QALLELEEEGGVPARGARYANNQRTLVAGMRAL-----  284 (368)
T ss_pred             HH----------------------------------------HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            76                                        577766444 58888899999999999999886     


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                       |   ++++.+.. ...+.+++|.+++..+  ++...+.+.+.++||.++.|..+                         
T Consensus       285 -g---~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gi~v~~g~~~-------------------------  332 (368)
T PRK13479        285 -G---FEPLLDAE-IQSPIIVTFHAPADPA--YDFKEFYERLKEQGFVIYPGKLT-------------------------  332 (368)
T ss_pred             -C---CcccCCch-hcCceEEEEECCCCCC--cCHHHHHHHHHHCCEEEecCCCC-------------------------
Confidence             2   34554431 2334568888765422  23334444455679999865211                         


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  ..+.+|+|...++|.||+++++++|+++++.
T Consensus       333 ------------~~~~iRis~~~~~t~edi~~~l~~L~~~l~~  363 (368)
T PRK13479        333 ------------QVDTFRIGCIGDVDAADIRRLVAAIAEALYW  363 (368)
T ss_pred             ------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence                        0147999987789999999999999998864

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.92  E-value=1.6e-22  Score=215.71  Aligned_cols=312  Identities=14%  Similarity=0.062  Sum_probs=216.0

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcE
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY  190 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~  190 (603)
                      +|+.+.+. ..+.+++++.++...                   ..++++..  .  .+...++++|+.+++++|+++.+.
T Consensus        24 ~~~~~~~~-~~~~~~~a~~~~~~~-------------------~~~~~~~~--~--~~~~~~~~~~~~la~~~g~~~~~~   79 (371)
T PRK13520         24 ILSSMCTE-PHPIARKAHEMFLET-------------------NLGDPGLF--P--GTAKLEEEAVEMLGELLHLPDAYG   79 (371)
T ss_pred             eeeeeecC-chHHHHHHHHHHHhc-------------------CCCCcccC--c--cHHHHHHHHHHHHHHHhCCCCCCe
Confidence            58876655 455667777654321                   11333221  1  145677899999999999987665


Q ss_pred             EEeccC--------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          191 VYDYES--------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       191 vf~~es--------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      +|....                          .....+.+.++..|.++..++.+| ++.++.++|++.|..      ++
T Consensus        80 ~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~------~~  152 (371)
T PRK13520         80 YITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDD-DYRVDVKAVEDLIDD------NT  152 (371)
T ss_pred             EEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCCC-CCcCCHHHHHHHHhh------CC
Confidence            553211                          112224455667799999999885 678999999999974      47


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                      .++++.+.+|.||.+.|++.| ++|+++|++++||++|.++.     .-..+|+...++|++++|+|||.+. |.|.|++
T Consensus       153 ~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a-~~~~G~~  231 (371)
T PRK13520        153 IGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA-PIPAGGI  231 (371)
T ss_pred             EEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc-cCCceEE
Confidence            777788888999999999966 48999999999999987542     0012566667899999999998764 7789999


Q ss_pred             EEeCC-CCcCcCC--CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          319 FVKKS-TVPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       319 ~vkk~-~~~~L~p--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      ++++. .++.+..  ++..+.                           ...  ...||.+...++++.            
T Consensus       232 ~~~~~~~~~~l~~~~~~~~~~---------------------------~~~--~~~gt~~~~~~~~~~------------  270 (371)
T PRK13520        232 LFRDESYLDALAVDTPYLTSK---------------------------KQA--TLTGTRSGAGVAATY------------  270 (371)
T ss_pred             EEcCHHHHHhhcccCccccCC---------------------------CCc--ceEeeccChHHHHHH------------
Confidence            98664 4433321  111110                           001  236777776665554            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF  475 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~  475 (603)
                                                  .+++.+...|++++.++...++++|.++|.++      |   ++++.+    
T Consensus       271 ----------------------------~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~----  309 (371)
T PRK13520        271 ----------------------------AVMKYLGREGYRKVVERCMENTRWLAEELKER------G---FEPVIE----  309 (371)
T ss_pred             ----------------------------HHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC------C---CEEecC----
Confidence                                        57877766688899999999999999999875      2   342222    


Q ss_pred             CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          476 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       476 ~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      ...++++|.+++       ...+.+.+.++||.++.+   .                                    ..+
T Consensus       310 ~~~~~v~~~~~~-------~~~v~~~L~~~gi~v~~~---~------------------------------------~~~  343 (371)
T PRK13520        310 PVLNIVAFDDPN-------PDEVREKLRERGWRVSVT---R------------------------------------CPE  343 (371)
T ss_pred             CCceEEEEecCC-------HHHHHHHHHHCCceeccC---C------------------------------------CCC
Confidence            235688888762       234555445569988742   0                                    014


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ++|+|+++++|.+||++|++.|+++++
T Consensus       344 ~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        344 ALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            799999999999999999999998764

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.91  E-value=1.6e-22  Score=217.08  Aligned_cols=311  Identities=11%  Similarity=0.055  Sum_probs=204.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccch----HHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQ----ESGLESAMKKRIMD  181 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~----~~~~~~~aR~~Ia~  181 (603)
                      ...=|||+++++++.+.+++++.++..+.                      |++ .+..|.+    +.+.++++|++||+
T Consensus        10 ~s~~YL~~~~~~~~~~~~~~~~~~~~~~~----------------------p~~~~~~~gs~~~~g~~~~~~~~e~~la~   67 (370)
T PRK05937         10 VTNDFLGFSRSDTLVHEVEKRYRLYCRQF----------------------PHAQLGYGGSRAILGPSSLLDDLEHKIAH   67 (370)
T ss_pred             ECCCccCCCCCHHHHHHHHHHHHHhcccc----------------------CCCCCCCCCcCcccCChHHHHHHHHHHHH
Confidence            44569999999999999999988764321                      222 2222333    56789999999999


Q ss_pred             HcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEec-----------------cCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          182 FLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEF-----------------SWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       182 ~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~-----------------~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ++|++ +.++|.....+...+.....++|..|..-+.                 .+  ...+.++|++.|...++..+++
T Consensus        68 ~~~~~-~~l~~~sG~~a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~--~~~d~~~l~~~l~~~~~~~~~~  144 (370)
T PRK05937         68 FHGAP-EAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSF--RHNDLDHLESLLESCRQRSFGR  144 (370)
T ss_pred             HhCCC-eEEEECChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEe--cCCCHHHHHHHHHhhhccCCCc
Confidence            99984 3465543332222221111122222221110                 11  2357899999987422212356


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC----CCC---CcEEEEcccccCCCCCCceE
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS----LVR---PDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls----~~~---~Dflv~S~hK~fG~~P~G~G  316 (603)
                      .+|++.+++|++|.++|++.| ++|+++|++++||++|..|+  .+.+..    .++   .|.++.|++|+||  |.|.|
T Consensus       145 ~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~--~g~~g~g~~~~~~~~~~~~~~~tlsK~~g--~~G~~  220 (370)
T PRK05937        145 IFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGI--FGDDGKGFCHSLGYENFYAVLVTYSKALG--SMGAA  220 (370)
T ss_pred             EEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHHhhCCCCCcEEEEechhhhh--cCceE
Confidence            788899999999999999866 58999999999999999887  455542    233   2356788889999  88999


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      +|+.++ ....+....  +                            +..  +..| .+.++++++.             
T Consensus       221 vl~~~~-~~~~~~~~~--~----------------------------~~~--~s~~-~~~~~~~a~~-------------  253 (370)
T PRK05937        221 LLSSSE-VKQDLMLNS--P----------------------------PLR--YSTG-LPPHLLISIQ-------------  253 (370)
T ss_pred             EEcCHH-HHHHHHHhC--C----------------------------CCe--ecCC-CCHHHHHHHH-------------
Confidence            888754 221111000  0                            011  2333 4555666655             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 ++++++...| +.+.++++.|+++|.+.|...              +      
T Consensus       254 ---------------------------aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~--------------~------  285 (370)
T PRK05937        254 ---------------------------VAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA--------------A------  285 (370)
T ss_pred             ---------------------------HHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC--------------C------
Confidence                                       6888887777 667889999999998877532              0      


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      .++++.|.+++.+     ...+.+.++++||.++.  +|.+                                   ..+.
T Consensus       286 ~~~~~~i~~~~~~-----~~~~~~~L~~~gi~v~~--~~~~-----------------------------------~~~~  323 (370)
T PRK05937        286 PGCVQPIFLPGIS-----EQELYSKLVETGIRVGV--VCFP-----------------------------------TGPF  323 (370)
T ss_pred             CCCEEEEEeCChh-----HHHHHHHHHHCCeeEEe--eCCC-----------------------------------CCCE
Confidence            1123446666532     34566666778998863  4421                                   1258


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ||+|++++||.|||++|++.|++++++
T Consensus       324 iRis~~~~~t~edid~l~~~L~~~~~~  350 (370)
T PRK05937        324 LRVNLHAFNTEDEVDILVSVLATYLEK  350 (370)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988754

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=99.90  E-value=2.6e-25  Score=240.96  Aligned_cols=371  Identities=19%  Similarity=0.159  Sum_probs=261.3

Q ss_pred             HHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHH
Q 007454           97 RAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK  176 (603)
Q Consensus        97 R~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR  176 (603)
                      |+.||..|     .|||+++.+++++++.+....-.+   .               -...|||++...+....+.++++|
T Consensus        14 r~~e~s~~-----~yldhag~tl~sesq~~g~~~~sq---~---------------~e~~nphs~~~ts~~l~~~v~Q~r   70 (728)
T KOG2142|consen   14 RDREFSRL-----AYLDHAGRTLFSESQLEGVAFQSQ---S---------------SENANPHSHLGTSRSLARLVAQVR   70 (728)
T ss_pred             hhHHHHHH-----HHHHhhhhhhhhhcccchhhhhhh---c---------------cccCCCcccccchHHHHHHHHHHH
Confidence            67789887     399999999999999987432100   0               023678888766666779999999


Q ss_pred             HHHHHHcCCCCCcE--EEeccCchHHHHHHHH-----------------------------HHcCCEEEEE-ec--cCCc
Q 007454          177 KRIMDFLNISENDY--VYDYESEAVEAMIRTS-----------------------------EKRGARVMSA-EF--SWPR  222 (603)
Q Consensus       177 ~~Ia~~lna~~~e~--vf~~es~sV~~~~~~a-----------------------------~~~Ga~V~~~-~~--~~~~  222 (603)
                      -+|..+++....+|  +|+...++..-+++..                             .-.|.-+... .+  -|..
T Consensus        71 ~ril~~f~tta~dy~v~lp~~t~al~~vae~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~  150 (728)
T KOG2142|consen   71 LRILALFNTTAFDYEVSLPALTEALKLVAEAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDS  150 (728)
T ss_pred             HHHHHHhccccccccchhHHHHHHHHHHHHhCccccccccccchhhhhhcccccccceeeeeeeccceEEeeeeeecccc
Confidence            99999999988777  2221001111111100                             0011112211 11  0211


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                      -...   +-.....    .....|+.+++++|+.|.++-..+|. +.-..+|+++|||+..+..  -+||++..++||+.
T Consensus       151 ~~~s---ls~~~~~----ls~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSa--f~Ldaesy~f~~~~  221 (728)
T KOG2142|consen  151 EEFS---LSESEAN----LSEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSA--FPLDAESYPFDFNP  221 (728)
T ss_pred             cccc---ccccccC----cccchhcccchhcccccceeeeeeecccccCCceEEEEEeeccccc--ccchHhhCCCcccc
Confidence            1000   0000111    23578999999999999985555665 4447899999999999998  69999999999999


Q ss_pred             EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      . +|||||+ |+  |+|.+.+...+.+    .||+++..-..+.++..+.    ++      +++  +|.||.++-++++
T Consensus       222 ~-lltiFgy-et--gAvlv~~r~A~~~----Ggkt~sa~f~wp~~~l~s~----~l------kkr--~e~gk~~~kd~a~  281 (728)
T KOG2142|consen  222 K-LLTIFGY-ET--GAVLVMNRSAELK----GGKTASAEFSWPMLYLLSE----KL------KKR--FEDGKLRFKDIAQ  281 (728)
T ss_pred             h-heeecCC-Cc--hhhHHHhhhhHhh----cCccceeecccchHHHHHH----HH------HHH--Hhhccccccchhh
Confidence            9 9999998 87  8888877665322    3366543322222221111    12      234  7999999998877


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i--Gl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      +-                                        .++..+.++  |+..|..+...|.+++...|.++.|  
T Consensus       282 gl----------------------------------------~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~l--  319 (728)
T KOG2142|consen  282 GL----------------------------------------FVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALAL--  319 (728)
T ss_pred             he----------------------------------------eccchHhhhcccchhHHHHHHHHhhhHHHHHhhhcc--
Confidence            54                                        244444444  6999999999999999999999887  


Q ss_pred             CCCCceEEEeCCCC--CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhh----hhHHHHHh
Q 007454          460 TEGNALVKIYGPKI--RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK----EKDNVLEK  533 (603)
Q Consensus       460 ~~g~plv~Iygp~~--~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~----~~~~~l~~  533 (603)
                        |.|++++||-..  +.-.+++++||+...+|..++.-.|.|.+ ..||.+|+||+||+|+++.+++    +....+++
T Consensus       320 --G~kdmd~yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~-i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~  396 (728)
T KOG2142|consen  320 --GPKDMDSYGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSA-ISGLELRTGCFCNIGACKIYPGLYLEMSQKGLSA  396 (728)
T ss_pred             --CcchHhhhhhhccCccceeeeEEEEeccCCCCceeeeeeehhh-hhceeccCCCCCCCcceeecccccHHHHHHHhhh
Confidence              789999999532  34579999999999889999999999998 9999999999999999988753    45666788


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                      +.+|+|.   +      +.+     +| |+++|.+||+++..++..
T Consensus       397 g~~cgD~---d------g~~-----~s-~~~~~~~~~~a~~~~~v~  427 (728)
T KOG2142|consen  397 GKGCGDN---D------GQP-----VS-GYMQTPADVGAYLSAQVS  427 (728)
T ss_pred             ccccccC---C------CCc-----cc-ccccchhhhhHHHHHhhh
Confidence            8889863   1      222     78 999999999999987753

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.90  E-value=1.1e-21  Score=207.45  Aligned_cols=297  Identities=16%  Similarity=0.161  Sum_probs=210.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCC--cEEEecc----------------------Cch-HHH-HHHHHHHcCCEEEEEeccCCc
Q 007454          169 SGLESAMKKRIMDFLNISEN--DYVYDYE----------------------SEA-VEA-MIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~--e~vf~~e----------------------s~s-V~~-~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                      .+.++++|+.+++++|++++  ++++...                      ++. ... +...++..|.++..+++++ +
T Consensus        30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~~~~~~~~~a~~~g~~~~~i~~~~-~  108 (355)
T TIGR03301        30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVLINGAYGERLAKICEYLGIPHTDLNFSE-Y  108 (355)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEECCCchhhHHHHHHHHcCCceEEEecCC-C
Confidence            47789999999999999876  3444210                      011 111 2455677899999999874 5


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                      ..++.++|++.|..+    ++++++++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|+++
T Consensus       109 ~~~d~~~l~~~l~~~----~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~--~~~~~~~~~~d~~~  182 (355)
T TIGR03301       109 EPPDLNRIEEALAAD----PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA--IPIDIEELDVDALI  182 (355)
T ss_pred             CCCCHHHHHHHHHhC----CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCC--cccchhhcCccEEE
Confidence            678999999998742    357889999999999999999855 58999999999999988887  58899999999999


Q ss_pred             EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      +|+||++++ |.|+|++++++++++.+......-..+.    ...|..       ++     ...  ...+|++...+++
T Consensus       183 ~s~~K~l~~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~-----~~~--~~~~t~~~~~~~a  243 (355)
T TIGR03301       183 ASANKCLEG-VPGFGFVIARRDLLEASAGNARSLYLDL----YDQWAY-------ME-----KTG--KWRFTPPTHTVYA  243 (355)
T ss_pred             ecCCccccc-CCceeEEEECHHHHHHhhCCCCCceeeH----HHHHHH-------hh-----hcC--CCCCCCcHHHHHH
Confidence            999998754 7799999999988765542111100000    000000       00     000  1245777777766


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      +.                                        .+++.+.+.| ++.+.++.+.+.+++.+.|.++     
T Consensus       244 ~~----------------------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-----  278 (355)
T TIGR03301       244 FA----------------------------------------QALEELEAEGGVPARIARYRRNRELLVDGLRAL-----  278 (355)
T ss_pred             HH----------------------------------------HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            65                                        5888777666 8999999999999999999875     


Q ss_pred             CCCceEEEeCCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          461 EGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                       |   ++++.+..  .+++ ++.|.+++..  ......+.+.+.++||.++.|..+                        
T Consensus       279 -g---~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~i~~~~~~------------------------  326 (355)
T TIGR03301       279 -G---FQPLLPER--WQSPIIVSFLYPDDP--DFDFDDFYQELKERGFVIYPGKLT------------------------  326 (355)
T ss_pred             -C---CeeecCCC--CCCCcEEEEECCCCC--cchHHHHHHHHHHCCEEEECCccc------------------------
Confidence             2   45555532  2444 5678776421  122334555566789998765211                        


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                  .. +.||+|++.++|.+|++++++.|+++|
T Consensus       327 ------------~~-~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       327 ------------LA-DTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             ------------cc-cEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence                        11 589999999999999999999998754

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.90  E-value=5.1e-21  Score=204.47  Aligned_cols=310  Identities=14%  Similarity=0.041  Sum_probs=211.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND  189 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e  189 (603)
                      .+|++.+..|.+. +++++..+....                   .++++ .  +. ....+++++|+.|++++|+++++
T Consensus        23 ~~~~~~~~~~~~~-~~~a~~~~~~~~-------------------~~~~~-~--~~-~~~~~~~~~~~~la~~~g~~~~~   78 (373)
T TIGR03812        23 RILGSMCTNPHPI-AVKAYDMFIETN-------------------LGDPG-L--FP-GTKKIEEEVVGSLGNLLHLPDAY   78 (373)
T ss_pred             cEEEEEeCCchHH-HHHHHHHHhhcC-------------------CCCcc-c--Cc-cHHHHHHHHHHHHHHHhCCCCCC
Confidence            4788888876555 456655543210                   12332 1  11 13467789999999999998766


Q ss_pred             EEEeccC----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          190 YVYDYES----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       190 ~vf~~es----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      .++...+                            .....+...++..|++++.++.++ ++.++.++|+++|.+     
T Consensus        79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~d~~~l~~~l~~-----  152 (373)
T TIGR03812        79 GYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDE-DYTVDVKDVEDLIDD-----  152 (373)
T ss_pred             eEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCC-CCCcCHHHHHHHHhh-----
Confidence            5432111                            112223445667799999999874 788999999999864     


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC--------CCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK--------DMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~--------~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                       ++..+++...+|.||.+.|++.| ++|+++|++++||+++.++.        ....+|+...++|++++|+|||++. |
T Consensus       153 -~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~-~  230 (373)
T TIGR03812       153 -NTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLS-P  230 (373)
T ss_pred             -CcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCC-c
Confidence             34333434468999999999866 58999999999999986431        0025777777899999999997554 7


Q ss_pred             CceEEEEE-eCCCCcCcCC--CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454          313 SGFGCLFV-KKSTVPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK  389 (603)
Q Consensus       313 ~G~G~L~v-kk~~~~~L~p--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~  389 (603)
                      .|.|++++ +++..+.+..  ++..+.                           ...  ...||.+...++++.      
T Consensus       231 ~~~G~~~~~~~~~~~~l~~~~~~~~~~---------------------------~~~--~~~gt~~~~~~~~~~------  275 (373)
T TIGR03812       231 IPAGGILFRSKSYLKYLSVDAPYLTVK---------------------------KQA--TITGTRSGASAAATY------  275 (373)
T ss_pred             CCceEEEEeCHHHHhhhcccCcccCCC---------------------------CCc--ceEeechhHHHHHHH------
Confidence            78887776 4445443421  111100                           001  235888888777665      


Q ss_pred             cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454          390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY  469 (603)
Q Consensus       390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy  469 (603)
                                                        .+++.+.+.|++++.++...++++|.++|+++..        ..++
T Consensus       276 ----------------------------------~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~--------~~~~  313 (373)
T TIGR03812       276 ----------------------------------AVIKYLGREGYRKIVAECMENTRYLVEELKKIGF--------EPVI  313 (373)
T ss_pred             ----------------------------------HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCC--------eEEc
Confidence                                              5888777778999999999999999999998631        3344


Q ss_pred             CCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccC
Q 007454          470 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK  549 (603)
Q Consensus       470 gp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  549 (603)
                      .|     ..++|.|.+++.      .++.++|. ++||.++.+                                     
T Consensus       314 ~~-----~~~~v~~~~~~~------~~v~~~L~-~~gi~v~~~-------------------------------------  344 (373)
T TIGR03812       314 EP-----VLNIVAFEVDDP------EEVRKKLR-DRGWYVSVT-------------------------------------  344 (373)
T ss_pred             CC-----CceEEEEEeCCH------HHHHHHHH-HCCceeccC-------------------------------------
Confidence            32     457899988652      23455554 569988642                                     


Q ss_pred             CCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          550 ANLGITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       550 ~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                        ....+||+|++.++|.+||++|++.|++
T Consensus       345 --~~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       345 --RCPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             --CCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence              0114899999999999999999999875

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PLN03032 serine decarboxylase; Provisional

Probab=99.89  E-value=4.2e-21  Score=205.90  Aligned_cols=194  Identities=13%  Similarity=0.162  Sum_probs=152.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +...||=|--..-+.+.+++++..++.+                   ..+||.+.+.+|..+.++++++++.|+++||++
T Consensus        22 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~-------------------~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~   82 (374)
T PLN03032         22 KSSVHFGYPYNLDFDYGELSQLMKYSIN-------------------NLGDPFIESNYGVHSRQFEVGVLDWFARLWELE   82 (374)
T ss_pred             hhhhccCCCchhccChHHHHHHHHhccc-------------------CCCCCcccCCCCccHHHHHHHHHHHHHHHhCCC
Confidence            3456666766666777888888776431                   248999998899999999999999999999999


Q ss_pred             CCcE--EEec---cCc---------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 ENDY--VYDY---ESE---------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~~e~--vf~~---es~---------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++++  +|+.   |++                     ++..+.+.++..|.++..+|++ ++|++|.++|++.|..+   
T Consensus        83 ~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d-~~g~id~~~L~~~i~~~---  158 (374)
T PLN03032         83 KDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPTL-PSGEIDYDDLERALAKN---  158 (374)
T ss_pred             CccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeeeC-CCCcCcHHHHHHHHHHc---
Confidence            9887  7753   221                     0111223344557778888887 68999999999999752   


Q ss_pred             CCCeeEEEEeCccccccccccHHHHH-HHHhCC-----cEEEEeccccCCCCCCCC-------CCCCCCCcEEEEccccc
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWMR-IAQEND-----WHILIDACALGPKDMDSF-------GLSLVRPDFLICSFYQI  307 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g-----~~vlvDAaq~~~~~m~~l-------dls~~~~Dflv~S~hK~  307 (603)
                      ...+.+|++++.+++||++.|++.|+ +|+++|     +++||||||.+++  .++       |+. .++|.+++|+|||
T Consensus       159 ~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~--~p~~~~~~~~~~~-~~vDSis~s~HK~  235 (374)
T PLN03032        159 RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLM--MPFVSRAPEVTFR-KPIGSVSVSGHKF  235 (374)
T ss_pred             CCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhh--hhccCCCcccCCC-cCCcEEEECcccc
Confidence            12578999999999999999999775 889886     5899999999887  564       554 3799999999999


Q ss_pred             CCCCCCceEEEEEeCCCCcC
Q 007454          308 FGENPSGFGCLFVKKSTVPI  327 (603)
Q Consensus       308 fG~~P~G~G~L~vkk~~~~~  327 (603)
                      +|. |.|+|+|++|+..+..
T Consensus       236 ~g~-P~g~G~ll~r~~~~~~  254 (374)
T PLN03032        236 LGC-PMPCGVALTRKKHVKA  254 (374)
T ss_pred             cCC-CcCeEEEEEEchhhHh
Confidence            998 9999999999876543

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.88  E-value=3.5e-20  Score=200.27  Aligned_cols=194  Identities=12%  Similarity=0.025  Sum_probs=147.4

Q ss_pred             eeeec-CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          110 TCLDY-FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       110 vYLDy-aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      |.||- .-.+|+++.+++++.++..                    .++||++ .+..+......++++|+.+++++|+++
T Consensus        21 ~~~~~~~~~~p~~~~~~~a~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~   80 (387)
T PRK09331         21 INLDPIQRGGILTPEARKALIEYGD--------------------GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE   80 (387)
T ss_pred             cccChhhcCCCCCHHHHHHHHHHHh--------------------ccCCCcccccccccccChHHHHHHHHHHHHhCCCc
Confidence            44443 3578999999999987642                    2256655 444444455679999999999999953


Q ss_pred             CcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEec--cCCccccCHHHHHHHHhhcCC-CCC
Q 007454          188 NDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEF--SWPRLRINSEKLRKMVVSKGK-KKK  242 (603)
Q Consensus       188 ~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~--~~~~g~i~~~~L~~~l~~~~~-~~~  242 (603)
                        .+|...                      ..+.......++..|+++..++.  ++ ++.++.++|++.|..... ..+
T Consensus        81 --~~~~~g~t~a~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~-~~~~d~~~l~~~l~~~~~~~~~  157 (387)
T PRK09331         81 --ARVTHGAREGKFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYP-EYKITPEAYAEKIEEVKEETGK  157 (387)
T ss_pred             --EEEeCCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCc-CCCcCHHHHHHHHHHhhhccCC
Confidence              333211                      11222233446778999999998  43 678999999999864210 113


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++|++.+.+|.||.+.|++.| ++|+++|+++++|+++..|.  .+++...+++|++++|+||++|. |.|+|+|+++
T Consensus       158 ~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~--~~~~~~~~g~D~~~~s~~K~l~~-~~~~G~l~~~  234 (387)
T PRK09331        158 PPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGR--MPVDGKKLGADFIVGSGHKSMAA-SAPSGVLATT  234 (387)
T ss_pred             CCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCC--cCCCHHHcCCCEEEeeCcccccC-CCCEEEEEEC
Confidence            68999999999999999999866 58999999999999999998  68999899999999999999986 8899999999


Q ss_pred             CCCCcCcC
Q 007454          322 KSTVPILV  329 (603)
Q Consensus       322 k~~~~~L~  329 (603)
                      ++.++.+.
T Consensus       235 ~~~i~~~~  242 (387)
T PRK09331        235 EEYADKVF  242 (387)
T ss_pred             HHHHhhcc
Confidence            88765553

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.87  E-value=2.6e-20  Score=218.51  Aligned_cols=302  Identities=13%  Similarity=0.088  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec----------------------------------cCchHHHHHHHHHHcCCEEE
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY----------------------------------ESEAVEAMIRTSEKRGARVM  214 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~----------------------------------es~sV~~~~~~a~~~Ga~V~  214 (603)
                      .++++++|+.+++++|+  ++++|..                                  +|+++..   .+...|.+|+
T Consensus       567 ~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a---~a~~~G~~vv  641 (993)
T PLN02414        567 QEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPA---SAAMCGMKIV  641 (993)
T ss_pred             HHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHH---HHHHCCCEEE
Confidence            68999999999999999  7776642                                  2233222   2334699999


Q ss_pred             EEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC
Q 007454          215 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS  293 (603)
Q Consensus       215 ~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls  293 (603)
                      .++++ ++|.+|.++|+++|..+   +++|++|++++.||++|...|++.| ++||++|+.|++|++|..++ +...+..
T Consensus       642 ~v~~d-~~G~vDle~L~~~i~~~---~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~-~~l~~p~  716 (993)
T PLN02414        642 VVGTD-AKGNINIEELRKAAEAH---KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQ-VGLTSPG  716 (993)
T ss_pred             EeccC-CCCCcCHHHHHHHHhcc---CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhc-cCcCCcc
Confidence            99998 68999999999999742   2368999999999999999999866 58999999999999998887 2456667


Q ss_pred             CCCCcEEEEcccccCCCCCCc-----eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSG-----FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE  368 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G-----~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  368 (603)
                      ++++||+++|.||+|+. |.|     +|+|++|+.+...|.....| ..      ..+. .++      +     .    
T Consensus       717 ~~GaD~~~~s~HK~f~~-P~G~GGPg~G~l~~~~~L~p~lPg~~v~-~~------~~~~-~r~------~-----~----  772 (993)
T PLN02414        717 FIGADVCHLNLHKTFCI-PHGGGGPGMGPIGVKKHLAPFLPSHPVV-PT------GGIP-RPE------K-----T----  772 (993)
T ss_pred             ccCCCEEEecCCccCCc-CcccCCCCeeeEEEchhhcccCCCCccc-cC------CCcc-ccc------C-----C----
Confidence            89999999999997764 554     99999999765433211111 10      0000 000      0     0    


Q ss_pred             cccCCCChhhh---hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHH---HHHHH
Q 007454          369 KVAATNTFSGP---MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI---SRRGR  442 (603)
Q Consensus       369 ~e~GT~n~~gi---~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i---~~r~~  442 (603)
                      ---||.+.+..   +.+.                                        +++.++..+|.+.+   .++..
T Consensus       773 s~iGt~~~a~~g~al~l~----------------------------------------~A~~yi~~lG~~Gl~~~a~~a~  812 (993)
T PLN02414        773 QPLGTISAAPWGSALILP----------------------------------------ISYTYIAMMGSEGLTDASKIAI  812 (993)
T ss_pred             CCcCCccchhhhhHHHHH----------------------------------------HHHHHHHHHCHhHHHHHHHHHH
Confidence            01355443221   1111                                        57888888876655   88999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEE-EccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454          443 CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD  521 (603)
Q Consensus       443 ~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFn-v~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~  521 (603)
                      .+++|+.++|.+..  .      +.+.||....-+--++.+. +++..|  ++...|++-+-++||...+-++       
T Consensus       813 ~nAnYl~~rL~~~~--~------~~~~~~~~~~~hEfv~~~~~l~~~~g--~~~~di~krL~d~Gihapt~~~-------  875 (993)
T PLN02414        813 LNANYMAKRLEGHY--P------VLFRGKNGTCAHEFIIDLRPFKNTAG--IEPEDVAKRLMDYGFHAPTMSW-------  875 (993)
T ss_pred             HHHHHHHHHHHhhC--C------ccccCCCCCeeeeEEEeccccccccC--CCHHHHHHHHHHcCcEEeeecc-------
Confidence            99999999997632  1      3344442111112233332 221112  3445555544478998654110       


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh-hhhccccc
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARW  591 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~-~f~~~~~~  591 (603)
                                                    ...+.+|++...+++.+|+|+|++++..+..+ .-|+.++|
T Consensus       876 ------------------------------pv~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~~g~~  916 (993)
T PLN02414        876 ------------------------------PVPGTLMIEPTESESKAELDRFCDALISIREEIADIENGKA  916 (993)
T ss_pred             ------------------------------ccCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                                          01368999999999999999999999998887 43555554

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.86  E-value=1e-19  Score=213.65  Aligned_cols=332  Identities=15%  Similarity=0.128  Sum_probs=210.4

Q ss_pred             ccCcCCCCceeeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHH
Q 007454          101 YYQLSLSNHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK  176 (603)
Q Consensus       101 fp~L~~~~~vYLDyaa~tl----~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR  176 (603)
                      |-.|..+|.+|++|.|.|+    +|..+++++......              +. +|..--|  ..  ..-..+.+.+.+
T Consensus        94 ~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~--------------~T-aytPYqa--Ei--sQG~lqal~~~Q  154 (993)
T PLN02414         94 MKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGW--------------YT-QYTPYQA--EI--AQGRLESLLNYQ  154 (993)
T ss_pred             HHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHH--------------Hh-hcCCCch--HH--HHHHHHHHHHHH
Confidence            4445557889999999999    777777887653210              00 0100001  00  111356788999


Q ss_pred             HHHHHHcCCCCCcEEEecc----------------------------Cch-HHHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          177 KRIMDFLNISENDYVYDYE----------------------------SEA-VEAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       177 ~~Ia~~lna~~~e~vf~~e----------------------------s~s-V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ..|++++|++++++.+..+                            +.+ +..+...+++.|++|+.++++.  .  + 
T Consensus       155 t~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~--~--~-  229 (993)
T PLN02414        155 TMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD--F--D-  229 (993)
T ss_pred             HHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh--h--c-
Confidence            9999999999998855322                            222 2223344555666666665431  0  0 


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCC-CCCCCCCcEEEEccc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSF-GLSLVRPDFLICSFY  305 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~l-dls~~~~Dflv~S~h  305 (603)
                           ...      ..+ ..++.+..|.+|.+.|++.| ++||++|++|+| |++..+.  ..+ ++.++++||++.++|
T Consensus       230 -----~~~------~~v-~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal--~~l~~pge~GADi~vgsgq  294 (993)
T PLN02414        230 -----YSS------GDV-CGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLAL--TMLKPPGEWGADIVVGSAQ  294 (993)
T ss_pred             -----ccc------Cce-EEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHh--cCCCCHhhccCcEEEECCC
Confidence                 000      112 23345666889999999855 689999999999 7776665  455 488999999999999


Q ss_pred             ccCCCCCCc-----eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          306 QIFGENPSG-----FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       306 K~fG~~P~G-----~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      ||.+  |.|     .|+|++|++....+.+.++|-++. ... ...+..      .+++.+ .+.+  +|-||.|+....
T Consensus       295 Kwg~--P~G~GGP~aGflavr~~~~r~~PgriVG~s~d-~~g-~~~~~l------~LqtRe-qhiR--rEkaTsNict~q  361 (993)
T PLN02414        295 RFGV--PMGYGGPHAAFLATSQEYKRLMPGRIIGVSVD-SSG-KPALRM------AMQTRE-QHIR--RDKATSNICTAQ  361 (993)
T ss_pred             cccc--CCCCCCCCeeEEEECHHHHhhCCCcccCcccC-CCC-Cccccc------cccccc-chhh--hcccccchhHHH
Confidence            9973  555     799999998866443346652221 111 010000      011100 1233  689999998776


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      ++.+            .+.                       ..-+.++-..|+.+|.+|+..|+.+|.++|.++     
T Consensus       362 aL~A------------~la-----------------------~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~-----  401 (993)
T PLN02414        362 ALLA------------NMA-----------------------AMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKL-----  401 (993)
T ss_pred             HHHH------------HHH-----------------------HHHHHHhccccHHHHHHHHHHHHHHHHHHHhhc-----
Confidence            6641            110                       000223334799999999999999999999764     


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                       |   +++.++    ....+|+|.+.+      +.+++++| .++||.+|.-                            
T Consensus       402 -G---~~~~~~----~~f~~vt~~~~~------~~~v~~~L-~~~gI~l~~~----------------------------  438 (993)
T PLN02414        402 -G---FQVQSL----PFFDTVKVKCSD------ADAIADAA-AKVGINLRVV----------------------------  438 (993)
T ss_pred             -C---CccCCC----CCcCeEEEecCC------HHHHHHHH-HHCCCeeEEe----------------------------
Confidence             3   455554    234599999852      13345555 5679977521                            


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                                  ..+.||+|++.+||.+|||+|+++|+.
T Consensus       439 ------------~~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        439 ------------DANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             ------------cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence                        124799999999999999999999974

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.86  E-value=2.6e-19  Score=193.19  Aligned_cols=300  Identities=12%  Similarity=0.032  Sum_probs=190.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc----------------------------CchHHHHHH-HHHHcCCEEEEEecc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE----------------------------SEAVEAMIR-TSEKRGARVMSAEFS  219 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------------s~sV~~~~~-~a~~~Ga~V~~~~~~  219 (603)
                      .++.+++++.+++++|++++++++...                            |.+...... ..++.|++++.++++
T Consensus        63 ~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~  142 (398)
T cd00613          63 LQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSD  142 (398)
T ss_pred             HHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccC
Confidence            367788999999999987766644321                            111111111 112345788888776


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH-HHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY-LWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl-~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                      + .+.++.++|++.+.+      +|++|++.+.+ .||.+.|+ +.| ++|+++|+++++|++|..+.  ..++...+++
T Consensus       143 ~-~~~~d~~~l~~~i~~------~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~--~~~~~~~~~~  212 (398)
T cd00613         143 E-GGTVDLEALKEEVSE------EVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT--GLKPPGEYGA  212 (398)
T ss_pred             C-CCCcCHHHHHHhcCC------CeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEecccccc--CCCChHHcCC
Confidence            3 567889999998853      68999998875 79999996 866 58999999999999987665  4666677899


Q ss_pred             cEEEEcccccCCCCC-----CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          298 DFLICSFYQIFGENP-----SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       298 Dflv~S~hK~fG~~P-----~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      |++++|+|||++  |     .|.|+|+++++..+.+.+...|..... ..... +..      .+.... .+.+  ++.|
T Consensus       213 d~~~~s~~K~~~--p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~------~~~~~~-~~~r--~e~~  279 (398)
T cd00613         213 DIVVGNLQKTGV--PHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDA-EGNRA-FRL------ALQTRE-QHIR--REKA  279 (398)
T ss_pred             CEEEeeccccCC--CCCCCCCceeEEEEhhhhHhhCCCCeecccccc-CCCcc-eEE------ecccch-hhcc--cccc
Confidence            999999999983  4     368999999888776655444411100 00000 000      000000 0112  4678


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      |.++.+...+..           +...                        .+++.+...|++++.++.+.++++|.++|
T Consensus       280 ~~~~~~~~~~~~-----------~~a~------------------------~~l~~~~~~g~~~~~~~~~~~~~~l~~~L  324 (398)
T cd00613         280 TSNICTGQALLA-----------LMAA------------------------MYIVYLGPEGLKEIAERAHLNANYLAKRL  324 (398)
T ss_pred             cccceecHHHHH-----------HHHH------------------------HHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            887665443321           1111                        34454445588899999999999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      .++..        ..+  +.  ..+.++|.|.++...+  +....+.+.+.++||.+..-.         .         
T Consensus       325 ~~~~~--------~~~--~~--~~~~~~v~~~~~~~~~--~~~~~~~~~L~~~gi~~~~~~---------~---------  372 (398)
T cd00613         325 KEVGG--------VLP--FN--GPFFHEFVLRLPPLYG--IRAEDLAKALIDGGFHAPTMY---------L---------  372 (398)
T ss_pred             HhcCC--------ccc--CC--CCeeEEEEEEcCCcch--HHHHHHHHhhhhcCccccccc---------c---------
Confidence            88631        111  11  2345678888764211  122334333345677532100         0         


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                                         ...+.||+|+++|||.||||++++.|
T Consensus       373 -------------------~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         373 -------------------PVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             -------------------CCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence                               11268999999999999999998764

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.84  E-value=1.1e-18  Score=193.77  Aligned_cols=295  Identities=13%  Similarity=0.063  Sum_probs=190.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccC-c-----------------------------hHHHHHHHHHHcCCEEEEEec
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYES-E-----------------------------AVEAMIRTSEKRGARVMSAEF  218 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es-~-----------------------------sV~~~~~~a~~~Ga~V~~~~~  218 (603)
                      .+++.+.++.+++++|.+. ..+++... .                             ........++..|++++.+++
T Consensus       112 lel~~~~~~~la~l~G~~~-~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~  190 (481)
T PRK04366        112 LELMYELQEWLKEITGMDA-VTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS  190 (481)
T ss_pred             HHHHHHHHHHHHHHhCCCc-eEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec
Confidence            4677888899999988852 22232110 0                             011112234556888999888


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccc-ccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR  296 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~  296 (603)
                      + .++.++.++|+++|..      +|+++++.. .|.||.. .|++.| ++||++|++++||++|.++.- ..++..+++
T Consensus       191 ~-~~~~~D~e~L~~~i~~------~t~~V~v~~-Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~-g~~~~~~~G  261 (481)
T PRK04366        191 N-EDGLVDLEALKAAVGE------DTAALMLTN-PNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAIL-GKARPGDMG  261 (481)
T ss_pred             C-CCCCcCHHHHHhhccc------CCeEEEEeC-CCCccccchHHHHHHHHHHHcCCEEEEEecChhhhc-ccCCccccC
Confidence            7 4688999999998863      578888887 4589987 589855 589999999999999986631 235677899


Q ss_pred             CcEEEEcccccCCCCCC-----ceEEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCccccccc
Q 007454          297 PDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~-----G~G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                      +|++++++|||||. |.     |+|+|++|+.....+.+..+|  |. .++... +    +       +  ++ .++  +
T Consensus       262 aD~~~~~~hK~l~~-P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~-~~~l~~-~----r-------~--~~-i~r--~  322 (481)
T PRK04366        262 FDVVHLNLHKTFST-PHGGGGPGSGPVGVKEELAPFLPVPVVEKDGD-RYRLDY-D----R-------P--KS-IGR--V  322 (481)
T ss_pred             CCEEEEechhhcCC-CCCCCCCCeeeeeehhhhHhhCCCCeeeccCC-ceeecc-c----c-------c--cc-CCC--c
Confidence            99999999999875 54     567999999887777655444  21 111100 0    0       0  00 123  4


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC---HHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG---LTMISRRGRCLIN  446 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG---l~~i~~r~~~L~~  446 (603)
                      +++|.+..+++                                           +++.++..+|   +.++.++...+++
T Consensus       323 ~a~t~~~l~~~-------------------------------------------~a~~~l~~~G~~Gl~~~a~~~~~~a~  359 (481)
T PRK04366        323 RAFYGNFGVLV-------------------------------------------RAYAYIRSLGAEGLREVSEDAVLNAN  359 (481)
T ss_pred             ccccCchHHHH-------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66776543322                                           3555665565   5577778888999


Q ss_pred             HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEc--cCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhh
Q 007454          447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF--DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ  524 (603)
Q Consensus       447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~--~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~  524 (603)
                      ||.++|.++.  .      +. +..    .....+.|...  ..+|  ++...|.+.+.++||.++.-   ..       
T Consensus       360 ~l~~~L~~~~--~------~~-~~~----~~~~~~~~~~~~~~~~g--~~~~~v~~~L~~~Gi~~~~~---~~-------  414 (481)
T PRK04366        360 YLKARLKDIY--D------LP-YDR----PCMHEFVLSGKKLKETG--VRTLDIAKRLLDYGFHPPTI---YF-------  414 (481)
T ss_pred             HHHHHhHhhC--c------cc-CCC----CeeEEEEEECccccccC--CCHHHHHHHHHHCCccCCcc---cc-------
Confidence            9999998761  1      21 211    11112222211  1122  34556666666789886511   00       


Q ss_pred             hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q 007454          525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADF  585 (603)
Q Consensus       525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f  585 (603)
                                               .....+.+|+|++.+||.+|||+|++.|+++.++..
T Consensus       415 -------------------------p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~  450 (481)
T PRK04366        415 -------------------------PLIVPEALMIEPTETESKETLDAFIAAMKQIAEEAK  450 (481)
T ss_pred             -------------------------ccccCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                     011136899999999999999999999999877654

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.83  E-value=4.8e-19  Score=187.15  Aligned_cols=264  Identities=14%  Similarity=0.099  Sum_probs=183.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCC--CCcEEEeccC-ch-----------------------------------HHHHHHHHHH
Q 007454          167 QESGLESAMKKRIMDFLNIS--ENDYVYDYES-EA-----------------------------------VEAMIRTSEK  208 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna~--~~e~vf~~es-~s-----------------------------------V~~~~~~a~~  208 (603)
                      ...++++++++.+++++|++  +.+.+|+... ++                                   ...+...++.
T Consensus        35 ~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~  114 (345)
T cd06450          35 AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY  114 (345)
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHH
Confidence            35678899999999999986  3466665321 11                                   1112233344


Q ss_pred             cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC
Q 007454          209 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM  287 (603)
Q Consensus       209 ~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m  287 (603)
                      .|.+++.++++ +++.++.++|+++|.+......+++++++++.+|.||.+.|++.| ++|+++|+++++|+++..+.  
T Consensus       115 ~g~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~--  191 (345)
T cd06450         115 LDVKVRLVPVD-EDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFL--  191 (345)
T ss_pred             HhcCeEEeeeC-CCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHH--
Confidence            57788888877 467899999999997422222357899999999999999999866 58999999999999988876  


Q ss_pred             CCCCCC------CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454          288 DSFGLS------LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ  361 (603)
Q Consensus       288 ~~ldls------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~  361 (603)
                      .+++..      ..++|++++|+|||++. |.|.|++++|              ..       ..|              
T Consensus       192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-p~g~g~~~~~--------------~~-------~~~--------------  235 (345)
T cd06450         192 LPFPEPRHLDFGIERVDSISVDPHKYGLV-PLGCSAVLVR--------------AL-------KLW--------------  235 (345)
T ss_pred             hhChhhHHHhcCccccCEEEEchhHhhCC-CcchHHHHHH--------------HH-------HHH--------------
Confidence            343322      23799999999998875 8899998877              00       000              


Q ss_pred             CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454          362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG  441 (603)
Q Consensus       362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~  441 (603)
                                                                                    .+++.+...|++.+.++.
T Consensus       236 --------------------------------------------------------------~~l~~l~~~g~~~~~~~~  253 (345)
T cd06450         236 --------------------------------------------------------------ATLRRFGRDGYGEHIDRI  253 (345)
T ss_pred             --------------------------------------------------------------HHHHHHhHHHHHHHHHHH
Confidence                                                                          355555555788889999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454          442 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD  521 (603)
Q Consensus       442 ~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~  521 (603)
                      ..+++++.+.|.+++        .++++++.    +.+++.|.+.+....-+....+.+.+.++|+.+..+...      
T Consensus       254 ~~~~~~l~~~L~~~~--------~~~~~~~~----~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~------  315 (345)
T cd06450         254 VDLAKYLAELIRADP--------GFELLGEP----NLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTL------  315 (345)
T ss_pred             HHHHHHHHHHHhcCC--------CeEEecCC----ceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEE------
Confidence            999999999998763        26777652    478999998752000022233444344555443322100      


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHH
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQ  579 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~  579 (603)
                                                    ...+.+|+|++.+ ||.+||++|++.|++
T Consensus       316 ------------------------------~~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         316 ------------------------------GGPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             ------------------------------CCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence                                          0125899999986 699999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.83  E-value=8.2e-18  Score=179.75  Aligned_cols=188  Identities=11%  Similarity=0.042  Sum_probs=139.9

Q ss_pred             CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc
Q 007454          117 IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE  195 (603)
Q Consensus       117 ~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e  195 (603)
                      .+++.+.+++++..+..                    .++|+++ .+..+......+.+.|+++++++|+  +++++...
T Consensus        10 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g   67 (361)
T cd06452          10 GGRLTPEARKALIEWGD--------------------GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPG   67 (361)
T ss_pred             CCCCCHHHHHHHHHHhc--------------------ccCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCC
Confidence            35778888888876532                    2356654 3333333445788999999999999  56655321


Q ss_pred             C----------------------chHHHHHHHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCC-CCCeeEEEEeC
Q 007454          196 S----------------------EAVEAMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKK-KKQRGLFVFPL  251 (603)
Q Consensus       196 s----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~-~~~t~Lv~~~~  251 (603)
                      +                      .+...+...++..|++++.+++++. +..++.++|++.+....+. .++++++.+++
T Consensus        68 ~t~al~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~  147 (361)
T cd06452          68 AREGKFAVMHSLCEKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTH  147 (361)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEEC
Confidence            1                      1122233456778999999998852 2388999999988631110 13689999999


Q ss_pred             ccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          252 HSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       252 ~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      .+|.||...|++.+ ++|+++|++|++|+++..|.  .++++..++.|++++|+||+||. |.|+|+|+++++.++.+.
T Consensus       148 p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~--~~~~~~~~~~d~~~~s~~K~l~~-~~~~G~l~~~~~~~~~l~  223 (361)
T cd06452         148 VDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGR--MPVSGKELGADFIVGSGHKSMAA-SAPIGVLATTEEWADIVF  223 (361)
T ss_pred             CCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCC--cCCCHHHcCCCEEEecCCccccC-CCCeEEEEECHHHHHHHh
Confidence            99999999999855 58999999999999999887  57888888999999999999985 779999999987766554

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.82  E-value=2.3e-18  Score=185.58  Aligned_cols=325  Identities=12%  Similarity=0.136  Sum_probs=206.0

Q ss_pred             ceeeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC
Q 007454          109 HTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN  184 (603)
Q Consensus       109 ~vYLDyaa~tl----~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln  184 (603)
                      .-|+|.+++.+    .++.+++++.+.+..                  +..+++++.+..|.  .....+.|++|++++|
T Consensus        38 ~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~------------------~~~~~~~s~~~~G~--~~~~~~le~~ia~~~g   97 (393)
T TIGR01822        38 REVLNFCANNYLGLSSHPDLIQAAKDALDE------------------HGFGMSSVRFICGT--QDIHKELEAKIAAFLG   97 (393)
T ss_pred             ceEEEeeCCCccccCCCHHHHHHHHHHHHH------------------hCCCCCCcCcccCC--hHHHHHHHHHHHHHhC
Confidence            44555555542    356677776654321                  11255666655554  4567889999999999


Q ss_pred             CCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCCc---------------cccCHHHHHHHHhhcCCCCCCeeEEEE
Q 007454          185 ISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR---------------LRINSEKLRKMVVSKGKKKKQRGLFVF  249 (603)
Q Consensus       185 a~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~---------------g~i~~~~L~~~l~~~~~~~~~t~Lv~~  249 (603)
                      .+ +.++|....++...+....-+.|.+|...+..++.               ..++.++|++.|......+.+|+++++
T Consensus        98 ~~-~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~  176 (393)
T TIGR01822        98 TE-DTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQLKEARAAGARHRLIAT  176 (393)
T ss_pred             CC-cEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhhhhcCCCceEEEE
Confidence            84 56666544444444444444566666654433221               125889999988742111236899999


Q ss_pred             eCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC-------CCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          250 PLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD-------SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       250 ~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~-------~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++|+||.+.|++.| ++|+++|+++++|++|..+..-.       .+++. .++|++++|+||++|+ + ..|+++.+
T Consensus       177 ~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g-~-r~G~~~~~  253 (393)
T TIGR01822       177 DGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGG-A-SGGFTTAR  253 (393)
T ss_pred             eCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhC-C-CcEEEEeC
Confidence            9999999999999866 58999999999999986654100       12332 2689999999999984 4 46999988


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +++++.+.+...           . +                     .-.+|.+...++++.                  
T Consensus       254 ~~~~~~l~~~~~-----------~-~---------------------~~~~~~~~~~~~a~~------------------  282 (393)
T TIGR01822       254 KEVVELLRQRSR-----------P-Y---------------------LFSNSLPPAVVGASI------------------  282 (393)
T ss_pred             HHHHHHHHHhCc-----------c-c---------------------eecCCCCHHHHHHHH------------------
Confidence            877654432100           0 0                     013344443333322                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL  481 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv  481 (603)
                                            ++++.++  +++.+.++++.+++++.+.|.++      |   +.++++     .++++
T Consensus       283 ----------------------~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~-----~~~~~  324 (393)
T TIGR01822       283 ----------------------KVLEMLE--ASNELRDRLWANTRYFRERMEAA------G---FDIKPA-----DHPII  324 (393)
T ss_pred             ----------------------HHHHHHh--cCHHHHHHHHHHHHHHHHHHHHc------C---CCCCCC-----CCCEE
Confidence                                  4666553  46778889999999999999864      2   233332     34677


Q ss_pred             EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454          482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL  561 (603)
Q Consensus       482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl  561 (603)
                      .+.+.+.   .-..++..+|+ ++||.++ |..+ +. .                              ..+...||+|+
T Consensus       325 ~i~~~~~---~~~~~l~~~L~-~~gI~v~-~~~~-~~-~------------------------------~~~~~~iRis~  367 (393)
T TIGR01822       325 PVMLYDA---VLAQRFARRLL-EEGIYVT-GFFY-PV-V------------------------------PKGQARIRVQI  367 (393)
T ss_pred             EEEeCCH---HHHHHHHHHHH-HCCeeEe-eeCC-CC-C------------------------------CCCCceEEEEE
Confidence            7766541   01123344554 5699997 4322 10 0                              01124699999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 007454          562 GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++++|.+||+++++.|++.+.+
T Consensus       368 ~~~~t~edi~~~~~~l~~~~~~  389 (393)
T TIGR01822       368 SAAHTEEQLDRAVEAFTRIGRE  389 (393)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PLN02452 phosphoserine transaminase

Probab=99.81  E-value=3.5e-18  Score=183.13  Aligned_cols=323  Identities=13%  Similarity=0.106  Sum_probs=217.6

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccC--ccccccchHHHHHHHHHHHHHHHcCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLK--TQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~--s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      .++|+=.+|=+.+|+.|++++.+.+...         +         ....+  ...+.+..-.++++++++.+.++|++
T Consensus         6 ~~~~~f~pGP~~lp~~Vl~~~~~~~~~~---------~---------~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~   67 (365)
T PLN02452          6 GRVFNFSAGPATLPANVLAKAQAELYNW---------E---------GSGMSVMEMSHRGKEFLSIIQKAEADLRELLDI   67 (365)
T ss_pred             CceEeeeCCCCCCCHHHHHHHHHHHhcc---------c---------ccCccccccCCCchHHHHHHHHHHHHHHHHhCC
Confidence            3567767788889999999987532210         0         00000  00001223468999999999999998


Q ss_pred             CCC-cEEEeccC-----------------------ch--HHHHHHHHHHcCCEEEEEeccCCcc---ccCHHHHHHHHhh
Q 007454          186 SEN-DYVYDYES-----------------------EA--VEAMIRTSEKRGARVMSAEFSWPRL---RINSEKLRKMVVS  236 (603)
Q Consensus       186 ~~~-e~vf~~es-----------------------~s--V~~~~~~a~~~Ga~V~~~~~~~~~g---~i~~~~L~~~l~~  236 (603)
                      +++ +++|..-+                       +.  -..+.+.+++.|.........| ..   .++.+++    ..
T Consensus        68 p~~y~v~~l~Gsgt~~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~----~~  142 (365)
T PLN02452         68 PDNYEVLFLQGGASTQFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKD-EKYTKIPSVSEW----EL  142 (365)
T ss_pred             CCCceEEEEeCccHHHHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCC-CCCCCCCChHHc----CC
Confidence            543 45553221                       10  1224556677776444442222 22   2344443    11


Q ss_pred             cCCCCCCeeEEEEeCcccccccc-ccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGAR-YPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                          .++...|.+.|..-.||+. +|+..+.     ++.++|||+|.+++  .++|++++++||  +|+||.+|  |.|+
T Consensus       143 ----~~~~~~v~~~hnETstGv~~~~~~~i~-----~~~lvVDa~Ss~g~--~pidv~~~~v~~--~saqK~lG--P~Gl  207 (365)
T PLN02452        143 ----TPDAKFVHICANETIHGVEFKDYPDVG-----NVPLVADMSSNFLS--KPVDVSKYGVIY--AGAQKNVG--PSGV  207 (365)
T ss_pred             ----CCCCcEEEECCCCCCCcEecCcccccC-----CCeEEEECCccccC--cccCHHHcCEEE--EecccccC--CCCe
Confidence                2367899999999999995 8876553     38999999999999  799999999988  59999999  8899


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |++++|+++++.+++.. ....       + |...      .+      ..  --.+|||+.+|+++.            
T Consensus       208 ~~v~vr~~~l~~~~~~~-~~~~-------~-~~~~------~~------~~--s~~~TP~v~~i~~l~------------  252 (365)
T PLN02452        208 TIVIIRKDLIGNARPIT-PGML-------D-YKIH------AE------ND--SLYNTPPCFGIYMCG------------  252 (365)
T ss_pred             EEEEEcHHHHhhcccCC-Cchh-------h-HHHH------Hh------cC--CccCChhHHHHHHHH------------
Confidence            99999999976654311 1111       1 1000      00      00  124899999999987            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC-
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI-  473 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~-  473 (603)
                                                  .+|+++.+. |++.+.+|.+.++++|++.|.++.     |   +  |++.. 
T Consensus       253 ----------------------------~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~-----G---~--y~~~~~  294 (365)
T PLN02452        253 ----------------------------LVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESN-----G---F--YVCPVE  294 (365)
T ss_pred             ----------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCC-----C---c--ccCCCC
Confidence                                        699999886 899999999999999999998753     2   2  55432 


Q ss_pred             CC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          474 RF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       474 ~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                      +. ++..+|+|++++.+    ..+.+.+.+.++||..--|                                      ..
T Consensus       295 ~~~rs~~~vsF~~~~~~----~~~~f~~~~~~~g~~~~~G--------------------------------------~r  332 (365)
T PLN02452        295 KSVRSLMNVPFTLGGSE----LEAEFVKEAAKAGMVQLKG--------------------------------------HR  332 (365)
T ss_pred             hHHhCCeEEEEEcCCch----hHHHHHHHHHHCCCcccCC--------------------------------------cc
Confidence            12 35669999998853    2334555666778764332                                      11


Q ss_pred             CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          553 GITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ..|.+|||+=---+.|||++|++|+++|-.+
T Consensus       333 ~~gg~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        333 SVGGMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             ccCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            1234999998889999999999999998643

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.7e-17  Score=168.78  Aligned_cols=358  Identities=14%  Similarity=0.150  Sum_probs=244.9

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL  171 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~  171 (603)
                      .+..+|.. |.--  .+.||||-+.-+..|+.+..+..+....        .|.-         .-..|.......+-++
T Consensus        18 pl~~lr~~-f~lp--~~viyLdgnSLGa~p~~~~a~~~q~a~d--------eW~~---------~lirsw~~a~~~W~~l   77 (407)
T COG3844          18 PLAKLRDR-FALP--GGVIYLDGNSLGARPRAVTARLQQVATD--------EWGE---------GLIRSWNKAKADWFDL   77 (407)
T ss_pred             chhhhHhh-ccCC--CCeEEeeccccccCchHHHHHHHHHHHH--------HHHh---------hhhhhhcccCCchhhc
Confidence            45677773 6544  6799999999999996655543221100        0110         0000000000112345


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccC-chHHHHH-HHHH-HcCCEEEEEecc-CC-------------------ccccCHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYES-EAVEAMI-RTSE-KRGARVMSAEFS-WP-------------------RLRINSE  228 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~~-~~a~-~~Ga~V~~~~~~-~~-------------------~g~i~~~  228 (603)
                      -+..=.+++-++|+.++|++....+ -.+.... ...+ +.|-+|...+-+ .|                   .+.+.++
T Consensus        78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~~~~~~~P~  157 (407)
T COG3844          78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIGYDLEGVIAPR  157 (407)
T ss_pred             hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhcccccceeeeChH
Confidence            5667788999999999998765433 2222222 2222 225555544311 11                   1345667


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI  307 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~  307 (603)
                      ++.+.+..      ++.+|.+++++.-||..+++..| ++||++|+++..|-+.++|-  .|+||...++||-+.+.||.
T Consensus       158 ~~~~~~~d------d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGa--vp~~Lh~~gaDfaigcsyKY  229 (407)
T COG3844         158 ALEEAITD------DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGA--VPVDLHAAGADFAIGCSYKY  229 (407)
T ss_pred             HHHHhhcc------ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCC--cceeecccCCCeeeeeecee
Confidence            77777764      79999999999999999999976 58999999999999999998  79999999999999999997


Q ss_pred             C-CCCCCceEEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhh
Q 007454          308 F-GENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM  384 (603)
Q Consensus       308 f-G~~P~G~G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~  384 (603)
                      + |+ |.+.++|||.+...+.-.|+..|  |-.. -.+..+          .+++..+ .++  |..||+++.+...+. 
T Consensus       230 LNgG-PGapa~l~v~~~h~e~~~~~lsgW~gha~-pf~m~~----------~y~p~~g-a~r--f~~gt~~V~s~aal~-  293 (407)
T COG3844         230 LNGG-PGAPAGLFVAPRHRERSWPPLSGWWGHAR-PFAMEE----------VYAPGPG-ARR--FLCGTQPVLSLAALE-  293 (407)
T ss_pred             ccCC-CCCceeEEeccccccccccccccccCCCC-cchhhh----------ccCcCcc-ccc--eeeCCcchhhhHHHh-
Confidence            5 44 99999999998877655556555  4210 000000          1122111 122  789999888776654 


Q ss_pred             hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                             .+||...+++|....+|...|++++++-+.....     .-
T Consensus       294 ---------------------------------------~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~-----~~  329 (407)
T COG3844         294 ---------------------------------------GALDIFADVDITELRKKSLALTDYFIELVEARCE-----YY  329 (407)
T ss_pred             ---------------------------------------hhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccc-----cC
Confidence                                                   6999999999999999999999999887766432     11


Q ss_pred             eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      .++|.+|....+||+-|||..+.      .+.++|.| ..+||..                                   
T Consensus       330 ~l~l~tPr~~~~rGsqvS~~hp~------~~~V~qaL-i~rGVig-----------------------------------  367 (407)
T COG3844         330 GLTLVTPRAHEERGSQVSLYHPH------GYQVMQAL-IDRGVIG-----------------------------------  367 (407)
T ss_pred             CcEEeccchhhhccceeeEecCc------HHHHHHHH-HHcCccc-----------------------------------
Confidence            37888998878999999999984      34445554 4455531                                   


Q ss_pred             ccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhh
Q 007454          545 NRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                           +.++.+++|+.|. +|++|+||+..++.|.+.|+..
T Consensus       368 -----D~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~  403 (407)
T COG3844         368 -----DFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL  403 (407)
T ss_pred             -----cccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence                 2234479999987 5799999999999999998763

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.80  E-value=1.9e-17  Score=183.34  Aligned_cols=335  Identities=15%  Similarity=0.105  Sum_probs=215.5

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-...|+.++++....+++-                 |..+.|.+....|.. ..++++-++++.+++|++.++++.+.
T Consensus        41 asen~~s~~v~~a~~s~~~~k-----------------y~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~n  103 (475)
T PLN03226         41 ASENFTSRAVMEALGSCLTNK-----------------YSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVN  103 (475)
T ss_pred             cCCccCCHHHHHHHhhHHhcc-----------------ccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEe
Confidence            677788999999977654211                 122455555444433 35666779999999999998888663


Q ss_pred             cc----CchHHHHHHHHHHcCCEEEE-----------------------------Eec--cCCccccCHHHHHHHHhhcC
Q 007454          194 YE----SEAVEAMIRTSEKRGARVMS-----------------------------AEF--SWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       194 ~e----s~sV~~~~~~a~~~Ga~V~~-----------------------------~~~--~~~~g~i~~~~L~~~l~~~~  238 (603)
                      -.    +.+...+....-+.|.+|..                             +++  +..++.||.++|++++... 
T Consensus       104 v~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~-  182 (475)
T PLN03226        104 VQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF-  182 (475)
T ss_pred             cCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc-
Confidence            11    11222222222233444332                             122  2246788999999998642 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCC---CCCcEEEEcccccCCCCCCc
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSL---VRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~---~~~Dflv~S~hK~fG~~P~G  314 (603)
                          +++++++. .| ++|...|++.+. +|+++|++++||++|.+|.  ...++..   .++|++++++||++++ |.|
T Consensus       183 ----~pklIv~~-~S-~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gl--i~~~~~~~p~~~~Div~~t~hK~L~G-P~G  253 (475)
T PLN03226        183 ----RPKLIIAG-AS-AYPRDWDYARMRKIADKVGALLMCDMAHISGL--VAAQEAASPFEYCDVVTTTTHKSLRG-PRG  253 (475)
T ss_pred             ----CCeEEEEe-cC-cCCCccCHHHHHHHHHHcCCEEEEEchhhhCc--ccCCCCCCCCCCCeEEEecCcccccC-CCc
Confidence                45666653 44 489999999664 8999999999999999887  4555332   2799999999999844 999


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                       |+++++++..+.+.+. .++..++..      ....  .  .     .+.   + .|+++...+++++           
T Consensus       254 -g~I~~~~~~~~~~~~g-~~~~~d~~~------~i~~--a--~-----~~~---~-~g~p~~~~iaal~-----------  301 (475)
T PLN03226        254 -GMIFFRKGPKPPKGQG-EGAVYDYED------KINF--A--V-----FPG---L-QGGPHNHTIAALA-----------  301 (475)
T ss_pred             -eEEEEchhhcccccCC-CccHHHHHH------Hhcc--c--c-----CCc---c-CCCchHHHHHHHH-----------
Confidence             8889888765433321 111111100      0000  0  0     011   2 4668888888876           


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR  474 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~  474 (603)
                                                   .|++++...|.+.+.+++..++++|.+.|.++      |   ++|+++.. 
T Consensus       302 -----------------------------aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~------G---~~l~~~~t-  342 (475)
T PLN03226        302 -----------------------------VALKQAMTPEFKAYQKQVKANAAALANRLMSK------G---YKLVTGGT-  342 (475)
T ss_pred             -----------------------------HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhC------C---CEEEcCCC-
Confidence                                         69999988899999999999999999999874      3   56777542 


Q ss_pred             CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                      ..+-.+|.|+..+     ++...+.+.+++.||.+.-+..  |+..                             .....
T Consensus       343 ~~hi~lv~~~~~g-----i~~~~~~~~L~~~~I~~nk~~~--p~~~-----------------------------~~~~~  386 (475)
T PLN03226        343 DNHLVLWDLRPLG-----LTGSRVEKVLDLAHITLNKNAV--PGDS-----------------------------SALVP  386 (475)
T ss_pred             CCCEEEEEccCCC-----CCHHHHHHHHHHCCCEECCCCC--CCCc-----------------------------ccCCC
Confidence            2233334443333     4556688888899999865531  1100                             00111


Q ss_pred             CEEEEe----cCCCCCHHHHHHHHHHHHHHHhh
Q 007454          555 TVVTAS----LGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       555 g~VR~S----lg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +.||+.    ...--+++|++++.++|.+.|+.
T Consensus       387 ~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~  419 (475)
T PLN03226        387 GGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI  419 (475)
T ss_pred             CCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            345553    44455789999999999999984

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.80  E-value=1.6e-17  Score=178.36  Aligned_cols=298  Identities=14%  Similarity=0.118  Sum_probs=195.8

Q ss_pred             ecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEE
Q 007454          113 DYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVY  192 (603)
Q Consensus       113 Dyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf  192 (603)
                      =+-|.+++|+.+++++.++..                       |.     +  ...++++++++++++++|++  +.++
T Consensus        18 t~~g~s~~~~~v~~a~~~~~~-----------------------~~-----~--~~~~~~~~~~~~~a~~~g~~--~~~~   65 (363)
T TIGR01437        18 TILGVSTVSDEVADAQKRGAQ-----------------------NY-----F--EIKELVNKTGEYIANLLGVE--DAVI   65 (363)
T ss_pred             ecCCCCCCCHHHHHHHHHHHh-----------------------cC-----C--CHHHHHHHHHHHHHHhhCCC--eEEE
Confidence            556778899999999876421                       00     0  14577899999999999975  4444


Q ss_pred             eccC-chHHHHHH----------------------------------------HHHHcCCEEEEEeccCCccccCHHHHH
Q 007454          193 DYES-EAVEAMIR----------------------------------------TSEKRGARVMSAEFSWPRLRINSEKLR  231 (603)
Q Consensus       193 ~~es-~sV~~~~~----------------------------------------~a~~~Ga~V~~~~~~~~~g~i~~~~L~  231 (603)
                      +... .++..++.                                        .++..|+++++++++   +.++.++|+
T Consensus        66 ~~g~t~al~~al~al~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~---~~~d~~~le  142 (363)
T TIGR01437        66 VSSASAGIAQSVAAVITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA---NECSAEQLE  142 (363)
T ss_pred             EcCHHHHHHHHHHHHhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC---CCCCHHHHH
Confidence            4322 12222222                                        223456677777664   358999999


Q ss_pred             HHHhhcCCCCCCeeEEE-EeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCC
Q 007454          232 KMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFG  309 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG  309 (603)
                      ++|.+      +|++++ ++..+|.+|.++|++.| ++||++|++|++|++|...-   . ....+++|++++|+||+++
T Consensus       143 ~ai~~------~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~---~-~~~~~g~D~~~~S~~K~l~  212 (363)
T TIGR01437       143 AAITE------KTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL---Q-KYYRLGADLVIYSGAKAIE  212 (363)
T ss_pred             HhcCh------hceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch---H-HHHHcCCCEEEEeCCcccC
Confidence            99974      466544 45557899999999865 58999999999999986321   1 1124578999999999776


Q ss_pred             CCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454          310 ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK  389 (603)
Q Consensus       310 ~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~  389 (603)
                      + |+ .|+|+.+++.++.+++...| ..                           +.  ++.||.+   ++|+.      
T Consensus       213 g-p~-~G~l~~~~~~i~~~~~~~~~-~~---------------------------~~--~~~~~~~---~~gl~------  251 (363)
T TIGR01437       213 G-PT-SGLVLGKKKYIEWVKLQSKG-IG---------------------------RA--MKVGKEN---ILGLT------  251 (363)
T ss_pred             C-Cc-eEEEEEcHHHHHHHHhccCC-Cc---------------------------ce--eccCHHH---HHHHH------
Confidence            5 88 79988877766555432222 10                           11  3455533   55555      


Q ss_pred             cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454          390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY  469 (603)
Q Consensus       390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy  469 (603)
                                                        +|++.+.+.|.+.+.++.+.+ +++.++|.+++        .++++
T Consensus       252 ----------------------------------aAl~~~~~~~~~~~~~~~~~~-~~l~~~L~~i~--------g~~~~  288 (363)
T TIGR01437       252 ----------------------------------AALEQYLSTGKESGAEMVAKL-TPFIEALNTLK--------GVSAS  288 (363)
T ss_pred             ----------------------------------HHHHHHHccCcccHHHHHHHH-HHHHHHHhcCC--------CeEEE
Confidence                                              688887777888888777764 47999998764        26666


Q ss_pred             CCCCCCCC---CCEEEEEEccCCCCccCHHHHHHHHhcCC--cEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          470 GPKIRFDR---GPALAFNVFDWKREKIEPVLVQKLADREN--ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       470 gp~~~~~r---g~ivsFnv~~~~g~~v~~~~V~~Lad~~g--I~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      .+......   ...|+|+.... |  +++..+.+.+.+.|  |.+|.-                                
T Consensus       289 ~~~~~~~~~~~~~~v~~~~~~~-g--~~~~~l~~~L~~~~~~I~~r~~--------------------------------  333 (363)
T TIGR01437       289 IVQDEAGRDIARAEIRFDESEL-G--MTAADVVQALRQGEPAIYTRGY--------------------------------  333 (363)
T ss_pred             EecCCCCCcCceEEEEEeccCC-C--CCHHHHHHHHhcCCCCEEEeee--------------------------------
Confidence            43211111   24577776421 1  45566666666555  666530                                


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                            ....|.||+++.. +|++|+++|+++|++++
T Consensus       334 ------~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       334 ------KANEGIIEIDPRS-VTGGQLDIIVERIREIV  363 (363)
T ss_pred             ------eecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence                  1223689999986 55999999999998864

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.80  E-value=1.4e-17  Score=196.44  Aligned_cols=283  Identities=15%  Similarity=0.083  Sum_probs=187.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec----------------------------cCch-HHHHHHHHHHcCCEEEEEecc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY----------------------------ESEA-VEAMIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~----------------------------es~s-V~~~~~~a~~~Ga~V~~~~~~  219 (603)
                      -+.+.+.++.|++++|+++.+..+..                            +|.+ +..+...++..|++|+.++.+
T Consensus       120 Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~  199 (954)
T PRK05367        120 LEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAA  199 (954)
T ss_pred             HHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCc
Confidence            46778899999999999988774322                            2222 222334455667777776653


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~D  298 (603)
                      . +  ++         .     .++ ..++.+..|.+|.+.|++.| ++||++|++++|||.+++..  ...+..++++|
T Consensus       200 ~-d--~~---------~-----~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~--~l~~pge~GaD  259 (954)
T PRK05367        200 K-A--LD---------H-----DDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALT--LLTPPGEMGAD  259 (954)
T ss_pred             c-C--CC---------c-----ccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhcc--CCCChhhcCCC
Confidence            1 1  10         1     133 34566668999999999855 68999999999999664443  23467899999


Q ss_pred             EEEEccccc-----CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          299 FLICSFYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       299 flv~S~hK~-----fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      |++.++|||     ||+ | |.|+|++|++....|.+...|-++. ...... +..      .+++.+ .+.+  +|.||
T Consensus       260 i~vgs~qkfg~P~g~GG-P-~aGflavr~~~~r~lpgrivG~s~d-~~g~~~-~~l------alqtRe-qhiR--rekaT  326 (954)
T PRK05367        260 IAVGSAQRFGVPMGFGG-P-HAAYFAVRDAYKRSMPGRIVGVSVD-AAGNPA-LRL------ALQTRE-QHIR--REKAT  326 (954)
T ss_pred             EEEeeCcccCCCCCCCC-C-CEEEEEECHHHHhhCCCCeeeeecc-cCCCcc-ccc------cccccc-cccc--ccccc
Confidence            999999999     887 6 8999999999877787666651111 000000 000      011111 1233  68999


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .|+....++..             +.                      ....+.++...|+.+|.+|+..|+++|.++|.
T Consensus       327 sNict~qaL~a-------------~~----------------------a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~  371 (954)
T PRK05367        327 SNICTAQVLLA-------------VM----------------------ASMYAVYHGPEGLKAIARRVHRLAAILAAGLR  371 (954)
T ss_pred             cccchHHHHHH-------------HH----------------------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99987655431             11                      00123556677999999999999999999997


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      ..      |   +++..+    ....++.|.+..      ++..|.+.+.++||.++.                      
T Consensus       372 ~~------G---~~~~~~----~~f~~~~~~~~~------~~~~i~~~l~~~gi~~~~----------------------  410 (954)
T PRK05367        372 AL------G---LEVVHD----SFFDTLTVEVGG------DAAAVLARALAAGINLRR----------------------  410 (954)
T ss_pred             hc------C---cccCCC----CCCCeEEEeCCC------CHHHHHHHHHHCCceecc----------------------
Confidence            63      3   344333    244688888631      334455555567887631                      


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                                        ...+.||+|++.+||.+||++|++.+.
T Consensus       411 ------------------~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        411 ------------------VDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             ------------------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence                              112479999999999999999999997

>PRK07179 hypothetical protein; Provisional

Probab=99.79  E-value=1e-17  Score=181.98  Aligned_cols=223  Identities=15%  Similarity=0.129  Sum_probs=155.7

Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-------CCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-------MDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-------m~~ldls~~~  296 (603)
                      .+.++|++.|.+     .++++|++...+|+||.++|++.| ++|+++|+++++|.+|..+..       +..+++. .+
T Consensus       168 ~d~~~l~~~l~~-----~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~  241 (407)
T PRK07179        168 NDVDHLRRQIER-----HGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SR  241 (407)
T ss_pred             CCHHHHHHHHHh-----cCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CC
Confidence            478999998864     147899999999999999999866 589999999999999976541       0123332 25


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +|+++.|+||.||  + ++|++++++++++.+.....                              +.   .-.+|.+.
T Consensus       242 vdi~~~S~sK~~g--~-~~G~l~~~~~~~~~~~~~~~------------------------------~~---~~~~t~~~  285 (407)
T PRK07179        242 VHFITASLAKAFA--G-RAGIITCPRELAEYVPFVSY------------------------------PA---IFSSTLLP  285 (407)
T ss_pred             CCEEEeechHhhh--c-cCeEEEeCHHHHHHHHHhCc------------------------------Ce---eeCCCCCH
Confidence            7999999999999  4 48999988766443321000                              00   12456555


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ..++++.                                        ++++.+..  .+...++++.++++|.+.|.++.
T Consensus       286 ~~~aa~~----------------------------------------aal~~~~~--~~~~~~~l~~~~~~l~~~L~~~g  323 (407)
T PRK07179        286 HEIAGLE----------------------------------------ATLEVIES--ADDRRARLHANARFLREGLSELG  323 (407)
T ss_pred             HHHHHHH----------------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC
Confidence            5555443                                        46666543  35567889999999999998762


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                               +++++      .++++.+.+.+.    .....+.+.+.++||.++  .+|.+..                 
T Consensus       324 ---------~~v~~------~~~i~~l~~~~~----~~~~~~~~~L~~~GI~~~--~~~~p~~-----------------  365 (407)
T PRK07179        324 ---------YNIRS------ESQIIALETGSE----RNTEVLRDALEERNVFGA--VFCAPAT-----------------  365 (407)
T ss_pred             ---------CCCCC------CCCEEEEEeCCH----HHHHHHHHHHHHCCceEe--eecCCCC-----------------
Confidence                     33443      357888886532    112345555667899854  4454421                 


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    ....+.||+|++.++|.|||++++++|++++++
T Consensus       366 --------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~  398 (407)
T PRK07179        366 --------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDE  398 (407)
T ss_pred             --------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence                          111368999999999999999999999998876

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.79  E-value=1.1e-16  Score=170.47  Aligned_cols=331  Identities=16%  Similarity=0.117  Sum_probs=239.5

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ..|=++.++.|++++..-+..+                            ....-..++.++++.+..+|+.+..+++..
T Consensus        10 ~PGP~~v~~~V~~am~~~~~~h----------------------------~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll   61 (383)
T COG0075          10 TPGPVPVPPRVLLAMARPMVGH----------------------------RSPDFVGIMKEVLEKLRKVFGTENGDVVLL   61 (383)
T ss_pred             eCCCCCCCHHHHHHhcCCCCCC----------------------------CCHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            4566788999999986522110                            011235788899999999999984344322


Q ss_pred             ccC-----------------------ch--HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEE
Q 007454          194 YES-----------------------EA--VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV  248 (603)
Q Consensus       194 ~es-----------------------~s--V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~  248 (603)
                      ..+                       +.  =.++.+.+++.|++|..+...| .-.++++++++.|..    .++.++|+
T Consensus        62 ~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w-g~~v~p~~v~~~L~~----~~~~~~V~  136 (383)
T COG0075          62 SGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEW-GEAVDPEEVEEALDK----DPDIKAVA  136 (383)
T ss_pred             cCCcHHHHHHHHHhccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhc----CCCccEEE
Confidence            111                       11  2346788999999999999998 667899999999984    24788999


Q ss_pred             EeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcC
Q 007454          249 FPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPI  327 (603)
Q Consensus       249 ~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~  327 (603)
                      +.|.---||+++|++.|+ +++++|.+++|||++++|-  .++++.+|++|+++.+..|.++. |.|+|++.++++..+.
T Consensus       137 ~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg--~~~~vd~wgiDv~itgSQK~l~~-PPGla~v~~S~~a~e~  213 (383)
T COG0075         137 VVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGG--EPLKVDEWGIDVAITGSQKALGA-PPGLAFVAVSERALEA  213 (383)
T ss_pred             EEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCC--cccchhhcCccEEEecCchhccC-CCccceeEECHHHHHH
Confidence            999999999999999775 7899999999999888776  69999999999999999999988 7799999999988766


Q ss_pred             cCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhh
Q 007454          328 LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQ  407 (603)
Q Consensus       328 L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~  407 (603)
                      ++.....+   +......++..       ++.     .+  .-.-|+++..+.+|.                        
T Consensus       214 ~~~~~~~~---~ylDL~~~~~~-------~~~-----~~--~~p~Tppv~~i~aL~------------------------  252 (383)
T COG0075         214 IEERKHPS---FYLDLKKWLKY-------MEK-----KG--STPYTPPVNLIYALR------------------------  252 (383)
T ss_pred             HhcCCCCc---eeecHHHHHHH-------Hhh-----cC--CCCCCCCHHHHHHHH------------------------
Confidence            65321111   00000000000       010     00  125688888888876                        


Q ss_pred             hhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc
Q 007454          408 QKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD  487 (603)
Q Consensus       408 ~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~  487 (603)
                                      .+|+.+.+-|+++..+|-+.+.++++.+|..|      |   +++++. .......+.+|.++.
T Consensus       253 ----------------~al~~i~~EGle~r~~RH~~~~~a~r~~~~al------G---l~~~~~-~~~~s~tvta~~~P~  306 (383)
T COG0075         253 ----------------EALDLILEEGLEARIARHRRLAEALRAGLEAL------G---LELFAD-PERRSPTVTAIKVPE  306 (383)
T ss_pred             ----------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CccccC-cccCCCceEEEECCC
Confidence                            69999999999999999999999999999987      3   566662 222334566666655


Q ss_pred             CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCH
Q 007454          488 WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANF  567 (603)
Q Consensus       488 ~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~  567 (603)
                      .-   -+......+.+++||.+..|.-                                    ....-..||+.-=+-+.
T Consensus       307 g~---~~~~~~~~~~~~~g~~i~gg~~------------------------------------~l~gkifRIGhMG~~~~  347 (383)
T COG0075         307 GV---DDKKVRRALLKEYGVEIAGGQG------------------------------------PLKGKIFRIGHMGNVRP  347 (383)
T ss_pred             CC---CcHHHHHHHHHhCCEEeccccc------------------------------------ccCccEEEEecCccCCH
Confidence            21   1233455678888999876611                                    12224789986558999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 007454          568 EDVYRLWAFVAQFLDADFV  586 (603)
Q Consensus       568 eDVd~l~~~l~~~l~~~f~  586 (603)
                      +||.+++.+|...|.+.-+
T Consensus       348 ~dv~~~l~ale~~L~~~g~  366 (383)
T COG0075         348 EDVLAALAALEAALRELGV  366 (383)
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999999998877433

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.79  E-value=1.4e-16  Score=171.11  Aligned_cols=157  Identities=13%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec---------------------cCchHHHHHHHHHHcCCEEEEEeccC-CccccCH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY---------------------ESEAVEAMIRTSEKRGARVMSAEFSW-PRLRINS  227 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~---------------------es~sV~~~~~~a~~~Ga~V~~~~~~~-~~g~i~~  227 (603)
                      ..+++.++.||+|+|+++..+ +.-                     .......+...++..|+++..++.+. +++.++.
T Consensus        51 ~~~~~~~e~lA~~~g~~~~~i-~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~  129 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDEARV-THGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDP  129 (370)
T ss_pred             hHHHHHHHHHHHHhCCCceEE-ECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCH
Confidence            467788999999999975444 210                     00111222345677899999998642 2467899


Q ss_pred             HHHHHHHhhcCC-CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          228 EKLRKMVVSKGK-KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       228 ~~L~~~l~~~~~-~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      ++|++.|...+. ...++++|++.+.+|+||.+.|++.| .+|+++|+++++|+++..+.  .++++..+++|+++.|+|
T Consensus       130 ~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~--~~~~~~~~~~di~v~s~s  207 (370)
T TIGR02539       130 EGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGR--MPVSAKEIGADFIVGSGH  207 (370)
T ss_pred             HHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCC--cCCCHHHcCCCEEEeeCc
Confidence            999999863111 11257899999999999999999866 58999999999999999886  577776778999999999


Q ss_pred             ccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          306 QIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      |+||. +.++|+++++++.++.|..
T Consensus       208 K~~~~-~g~~G~l~~~~~~i~~l~~  231 (370)
T TIGR02539       208 KSMAA-SGPCGVLGMSEEWEDIVLR  231 (370)
T ss_pred             ccccC-CCCEEEEEECHHHHhhhcc
Confidence            99984 5568999999988776654

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.79  E-value=3.7e-17  Score=182.46  Aligned_cols=206  Identities=15%  Similarity=0.128  Sum_probs=147.0

Q ss_pred             ccCchHHHHHHHHHHcCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc--cccccccccHHHHH-H
Q 007454          194 YESEAVEAMIRTSEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH--SRMTGARYPYLWMR-I  267 (603)
Q Consensus       194 ~es~sV~~~~~~a~~~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~--Sn~TG~~~pl~~i~-~  267 (603)
                      .+|.|+   .+.++..|.   +|+.+|++ .+++++.++|+++|...++  .++++|++.+.  +++||.+.|++.|+ +
T Consensus       217 ~~H~S~---~kaa~~lglg~~~v~~vp~d-~~g~~d~~~L~~~i~~~~~--~g~~~~~vvataGtt~tGaiDpl~eIa~i  290 (522)
T TIGR03799       217 RGHYSL---GKAADVLGIGRDNLIAIKTD-ANNRIDVDALRDKCAELAE--QNIKPLAIVGVAGTTETGNIDPLDEMADI  290 (522)
T ss_pred             CchHHH---HHHHHHcCCCcccEEEEEeC-CCCcCCHHHHHHHHHHHHH--CCCCcEEEEEEecCcCCCCcCCHHHHHHH
Confidence            345554   455666676   79999998 5899999999999974221  24667777655  66999999999775 8


Q ss_pred             HHhCCcEEEEeccccCCCCCCCCC-----CCCC-CCcEEEEcccccCCCCCCceEEEEEeCCC-CcCcCC--CCCC--Cc
Q 007454          268 AQENDWHILIDACALGPKDMDSFG-----LSLV-RPDFLICSFYQIFGENPSGFGCLFVKKST-VPILVD--NTSS--GM  336 (603)
Q Consensus       268 a~e~g~~vlvDAaq~~~~~m~~ld-----ls~~-~~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~~~L~p--~~~g--G~  336 (603)
                      |+++|+++|||||+.+++  ...+     +..+ ++|++++|+|||++. |.|+|+||+|+.. .+.+.+  .|..  |.
T Consensus       291 ~~~~g~~lHVDaA~gg~~--~~~~~~r~~l~gle~aDSit~d~HK~l~~-P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~  367 (522)
T TIGR03799       291 AQELGCHFHVDAAWGGAT--LLSNTYRHLLKGIERADSVTIDAHKQLYV-PMGAGMVLFKDPALMSAIEHHAEYILRKGS  367 (522)
T ss_pred             HHHcCCeEEEEchhhhHH--HhCHHHHHHhcCchhCCEEEEChhhcCCc-CcccEEEEEeCHHHHHHhccCcchhcCCCC
Confidence            999999999999999886  3333     4443 799999999997665 9999999999743 233332  1210  11


Q ss_pred             eeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCC
Q 007454          337 VSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGG  416 (603)
Q Consensus       337 v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  416 (603)
                      .                  ++.     +..  +|.|. ++.. +.+-                                 
T Consensus       368 ~------------------d~~-----~~~--legsR-~~~a-l~lw---------------------------------  387 (522)
T TIGR03799       368 K------------------DLG-----SHT--LEGSR-PGMA-MLVY---------------------------------  387 (522)
T ss_pred             C------------------ccc-----cce--eecCc-chHH-HHHH---------------------------------
Confidence            0                  000     011  45343 4332 2232                                 


Q ss_pred             CCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc
Q 007454          417 GGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD  487 (603)
Q Consensus       417 ~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~  487 (603)
                             .+++++...|++.+.++...|+++|.+.|.+.        |.+++++|.    ..++|+|.+..
T Consensus       388 -------~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~--------~~~el~~~p----~l~iv~Fr~~p  439 (522)
T TIGR03799       388 -------AGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ--------PDFELVTEP----ELCLLTYRYVP  439 (522)
T ss_pred             -------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC--------CCeEEecCC----CccEEEEEEeC
Confidence                   68888888899999999999999999999875        338999864    45799999743

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.78  E-value=4e-17  Score=179.55  Aligned_cols=301  Identities=12%  Similarity=0.095  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec--------------------------cCchHHHHH-HHHHHcCCEEEEEeccCC
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY--------------------------ESEAVEAMI-RTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~--------------------------es~sV~~~~-~~a~~~Ga~V~~~~~~~~  221 (603)
                      .+.+.+.++.+++++|+++++++++.                          ++.+..... ..++..|++++.+++++ 
T Consensus       111 ~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~-  189 (447)
T PRK00451        111 LQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED-  189 (447)
T ss_pred             HHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC-
Confidence            45666777889999999888775432                          222222222 23445799999999884 


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEE--eccccCCCCCCCCCCCCCCCc
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILI--DACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlv--DAaq~~~~~m~~ldls~~~~D  298 (603)
                      + .++.++|++.|.+      +|+++++++. |.||.+.|++.| ++||++|+++++  |+... +.  .. ...++++|
T Consensus       190 ~-~~d~~~l~~~i~~------~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~~~-g~--~~-~~~~~~~D  257 (447)
T PRK00451        190 G-VTDLEALEAAVDD------DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPVSL-GL--LK-PPGEYGAD  257 (447)
T ss_pred             C-CCCHHHHHHhcCC------CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChHHh-cc--CC-CcccCCCC
Confidence            5 8999999998863      6899999987 889999999966 589999999988  76543 32  12 12568999


Q ss_pred             EEEEccccc-----CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          299 FLICSFYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       299 flv~S~hK~-----fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      ++++|+|||     +|+ | |+|+++++++..+.+.+...|.+........  +...      +... ....+  ++.+|
T Consensus       258 ~~~~s~~k~~~~~~~~G-p-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~------~~~~-~~~~~--~~~~~  324 (447)
T PRK00451        258 IVVGEGQPLGIPLSFGG-P-YLGFFATRKKLVRQMPGRLVGETVDADGKRG--FVLT------LQAR-EQHIR--REKAT  324 (447)
T ss_pred             EEEECCCcCCCCCCCCC-C-CchHHHhhHHHHhhCCCCEeeeecccCCCee--eEee------cccc-ccccc--ccccc
Confidence            999999997     665 6 8999999999888777666653321111000  0000      0000 00112  46678


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .++.+..++.             ++.                      ...+++++...|++++.++...++++|+++|.
T Consensus       325 ~~~~~~~~~~-------------~~a----------------------aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~  369 (447)
T PRK00451        325 SNICTNQALN-------------ALA----------------------AAIYMSLLGPEGLRELAEQNHQKAHYLAERLA  369 (447)
T ss_pred             ccccccHHHH-------------HHH----------------------HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7776543321             000                      00245555556899999999999999999998


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      ++.        .++++..    .....+.+.+.      .+...+.+.+.++||.++.-  ..+     .          
T Consensus       370 ~~~--------g~~~~~~----~~~~~~~v~~~------~~~~~~~~~L~~~gi~~~~~--~~~-----~----------  414 (447)
T PRK00451        370 EIG--------GVELFDG----PFFNEFVVRLP------KPAEEVNEALLEKGILGGYD--LGR-----Y----------  414 (447)
T ss_pred             hcC--------CEEecCC----CeEEEEEEecC------CCHHHHHHHHHhcCCCCCcc--ccc-----c----------
Confidence            763        2555521    11122333331      12233444344567763210  000     0          


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                .     ... .+.+|+|+++++|.+||++|++.|++++
T Consensus       415 ----------~-----~~~-~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        415 ----------Y-----PEL-GNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             ----------c-----CCc-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                      0     011 2589999999999999999999998764

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.77  E-value=4.6e-17  Score=171.99  Aligned_cols=276  Identities=16%  Similarity=0.132  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHH---------------------HHHHHcCCEEEEEeccCCccccCH
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEAVEAMI---------------------RTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~---------------------~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ....+++|+.+++++|++ +.+++.....++...+                     ..++..|+++..++      .++.
T Consensus        45 ~~~~~~l~~~la~~~~~~-~~iv~~sg~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~------~~~~  117 (349)
T cd06454          45 SDLHEELEEELAEFHGKE-AALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFK------HNDM  117 (349)
T ss_pred             chHHHHHHHHHHHHhCCC-CEEEeccHHHHHHHHHHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEec------CCCH
Confidence            466789999999999985 4555432222222111                     22334455554432      2467


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC------CCCCCCCCCCCcEE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD------MDSFGLSLVRPDFL  300 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~------m~~ldls~~~~Dfl  300 (603)
                      ++++++|.... ...++++|++++.+|.||.+.|++.| ++|+++|+++++|+++..+.-      +..++....++|++
T Consensus       118 ~~le~~i~~~~-~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~  196 (349)
T cd06454         118 EDLEKLLREAR-RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDII  196 (349)
T ss_pred             HHHHHHHHHhh-ccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEE
Confidence            88888887421 11357899999999999999999854 689999999999999875531      00134445688999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      +.|+||+||  +.| |.++.+++.++.+.+..            .                   ..  ...++.+...++
T Consensus       197 ~~s~sK~~~--~~g-G~i~~~~~~~~~~~~~~------------~-------------------~~--~~~~~~~~~~~~  240 (349)
T cd06454         197 MGTLGKAFG--AVG-GYIAGSKELIDYLRSYA------------R-------------------GF--IFSTSLPPAVAA  240 (349)
T ss_pred             Eeechhhhc--ccC-CEEECCHHHHHHHHHhc------------h-------------------hh--hccCCCCHHHHH
Confidence            999999999  556 77776766543332110            0                   00  113455555554


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      ++.                                        ++++++..  ++.+.++.+.+.+++.+.|.++     
T Consensus       241 a~~----------------------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~l~~~-----  273 (349)
T cd06454         241 AAL----------------------------------------AALEVLQG--GPERRERLQENVRYLRRGLKEL-----  273 (349)
T ss_pred             HHH----------------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHhc-----
Confidence            443                                        57776655  4677889999999999999875     


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                       |   +.++++.    .+.++.+.+++.    .....+.+.+.++||.++.+....                        
T Consensus       274 -g---~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~L~~~gI~~~~~~~~~------------------------  317 (349)
T cd06454         274 -G---FPVGGSP----SHIIPPLIGDDP----AKAVAFSDALLERGIYVQAIRYPT------------------------  317 (349)
T ss_pred             -C---CcccCCC----CCcEEEEeCCCh----HHHHHHHHHHHhCCceEEEecCCc------------------------
Confidence             2   3344542    234555544321    123334444445599998541100                        


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                               .....+.||++++.++|.+||+++++.|+++
T Consensus       318 ---------~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         318 ---------VPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             ---------cCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence                     0011268999999999999999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.76  E-value=1.8e-16  Score=171.47  Aligned_cols=325  Identities=13%  Similarity=0.076  Sum_probs=203.5

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHH-HHHHHHHHcCCCCCcEEE
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYVY  192 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~-aR~~Ia~~lna~~~e~vf  192 (603)
                      .++-+++++.|++++..++...                 |..+++++.+..|......+++ +|+.+++++|++..++++
T Consensus        25 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~   87 (402)
T cd00378          25 IASENFTSPAVMEAMGSDLTNK-----------------YAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQP   87 (402)
T ss_pred             eccCCcCCHHHHHHhccccccc-----------------ccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeec
Confidence            4677788999999987654210                 1236776666545554444454 889999999998766654


Q ss_pred             eccCchHHHHHHH--------------------------HHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCe
Q 007454          193 DYESEAVEAMIRT--------------------------SEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       193 ~~es~sV~~~~~~--------------------------a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ..-++++..++..                          ++..|.++..+++++.  ++.++.++|++.+..     .++
T Consensus        88 ~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~-----~~~  162 (402)
T cd00378          88 HSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE-----FKP  162 (402)
T ss_pred             CCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh-----CCC
Confidence            3223333332222                          2334555555555433  578899999999863     257


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      +++++...  .+|...|++.| ++|+++|++|++|++|+.+..   ..+.++.  ++|+++.|+||+|++ |.| |+++.
T Consensus       163 ~~v~~~~~--~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G-~~g-g~i~~  236 (402)
T cd00378         163 KLIVAGAS--AYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRG-PRG-GLILT  236 (402)
T ss_pred             CEEEecCc--ccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCC-CCc-eEEEe
Confidence            77776554  46888899866 589999999999999865430   0133344  689999999998854 766 44455


Q ss_pred             eC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          321 KK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       321 kk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      ++ +..+.+......                                  ...+++.+..+.+++                
T Consensus       237 ~~~~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~a~~----------------  266 (402)
T cd00378         237 RKGELAKKINSAVFP----------------------------------GLQGGPHLHVIAAKA----------------  266 (402)
T ss_pred             ccHHHHHHHHHHhCc----------------------------------cccCCchHHHHHHHH----------------
Confidence            54 554433211000                                  012344444444433                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              .++......++....++.+.+++++.+.|.++      |   +.++.+   ...++
T Consensus       267 ------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~---~~~~~  310 (402)
T cd00378         267 ------------------------VALKEALEPEFKAYAKQVVENAKALAEALKER------G---FKVVSG---GTDNH  310 (402)
T ss_pred             ------------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhC------C---CeEeec---CCCCe
Confidence                                    34443332245677778889999999999875      2   344421   12467


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      .+.+.+.+. +  .....+.+++.++||.++.+..  +....                            +..+...+|+
T Consensus       311 ~v~v~~~~~-~--~~~~~~~~~l~~~gI~v~~~~~--p~~~~----------------------------~~~~~~~lRi  357 (402)
T cd00378         311 LVLVDLRPK-G--ITGKAAEDALEEAGITVNKNTL--PWDPS----------------------------SPFVPSGIRI  357 (402)
T ss_pred             EEEEeCCcc-C--CCHHHHHHHHHHcCcEEcCCcC--CCCCC----------------------------CCCCCCeeEe
Confidence            777777632 1  2334566777889999975422  11000                            0112358999


Q ss_pred             ecCCCC----CHHHHHHHHHHHHHHHhhhh
Q 007454          560 SLGYLA----NFEDVYRLWAFVAQFLDADF  585 (603)
Q Consensus       560 Slg~~t----t~eDVd~l~~~l~~~l~~~f  585 (603)
                      +++.++    +.+||+++++.|+++++...
T Consensus       358 ~~~~~~~~~~~~~di~~~~~~l~~~~~~~~  387 (402)
T cd00378         358 GTPAMTTRGMGEEEMEEIADFIARALKDAE  387 (402)
T ss_pred             cCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence            999987    69999999999999877654

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.76  E-value=2.3e-16  Score=171.80  Aligned_cols=327  Identities=11%  Similarity=0.076  Sum_probs=199.9

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHH-HHHHHHHHcCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISE  187 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~-aR~~Ia~~lna~~  187 (603)
                      .+.|+ ++-+++++.|++++..++...                 |..+++.+.+..|....+.+++ +|+.+++++|++.
T Consensus        27 ~~~l~-~~~n~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~   88 (416)
T PRK00011         27 HIELI-ASENFVSPAVMEAQGSVLTNK-----------------YAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEY   88 (416)
T ss_pred             Ceeee-cccCcCCHHHHHHHhchhhcc-----------------cccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc
Confidence            45555 455668999999986653210                 1225666655555555555555 8999999999987


Q ss_pred             CcEEEeccCchHHHHHHHH--------------------------HHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          188 NDYVYDYESEAVEAMIRTS--------------------------EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       188 ~e~vf~~es~sV~~~~~~a--------------------------~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      .++++...+.++..++...                          ...|+++..+++++.++.++.++|+++|..     
T Consensus        89 ~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-----  163 (416)
T PRK00011         89 ANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE-----  163 (416)
T ss_pred             eeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh-----
Confidence            7676543222322222221                          123455556665533567899999999863     


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                      .+++++.+..  +++|...|++.| ++|+++|+++++|++|+.|..   ..+.++.  ++|++++|+||++++ |.| |+
T Consensus       164 ~~~k~v~~~~--~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g-~~g-g~  237 (416)
T PRK00011        164 HKPKLIIAGA--SAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRG-PRG-GL  237 (416)
T ss_pred             cCCCEEEECC--CcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCC-CCc-eE
Confidence            2477777753  457888899866 589999999999999876541   0134454  689999999998854 665 55


Q ss_pred             EEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          318 LFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       318 L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      ++.+ ++..+.++.....|                                  -.+++....++++.             
T Consensus       238 i~~~~~~~~~~l~~~~~~~----------------------------------~~~~~~~~~~aa~~-------------  270 (416)
T PRK00011        238 ILTNDEELAKKINSAVFPG----------------------------------IQGGPLMHVIAAKA-------------  270 (416)
T ss_pred             EEeCCHHHHHHHHHHhCcc----------------------------------ccCCccHHHHHHHH-------------
Confidence            5554 34443333111000                                  11233333333332             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .++..+..-+++...++.+.+++++.+.|.++      |   ++++. .  ..
T Consensus       271 ---------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~-~--~~  311 (416)
T PRK00011        271 ---------------------------VAFKEALEPEFKEYAQQVVKNAKALAEALAER------G---FRVVS-G--GT  311 (416)
T ss_pred             ---------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---Ceeee-c--CC
Confidence                                       23332223367888889999999999999875      3   34442 1  12


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      ..+++.+.+.+. +  +....+.+++.++||.++.+..--  ...+                           ... ...
T Consensus       312 ~~~~~~i~~~~~-~--~~~~~~~~~L~~~GI~v~~~~~p~--~~~~---------------------------~~~-~~~  358 (416)
T PRK00011        312 DNHLVLVDLRSK-G--LTGKEAEAALEEANITVNKNAVPF--DPRS---------------------------PFV-TSG  358 (416)
T ss_pred             CCeEEEEeCccc-C--CCHHHHHHHHHHcCcEEccCcCCC--CCCC---------------------------CCC-CCc
Confidence            357888887532 1  233456666678899998553210  0000                           011 135


Q ss_pred             EEEecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454          557 VTASLGYL----ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       557 VR~Slg~~----tt~eDVd~l~~~l~~~l~~  583 (603)
                      +|++....    .|.+||++++++|++++..
T Consensus       359 ~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        359 IRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             eEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            88866443    4699999999999998664

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.75  E-value=5e-16  Score=170.36  Aligned_cols=321  Identities=11%  Similarity=0.049  Sum_probs=207.2

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-...|+.+++++...+++-                 |.-+.|......|.. ..+++.-+.+++.++||+.-.++=-.
T Consensus        56 asEN~~s~~v~~a~~s~l~nk-----------------yaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~  118 (493)
T PRK13580         56 ASENYSSLAVQLAMGNLLTDK-----------------YAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPH  118 (493)
T ss_pred             cccccCCHHHHHHhccccccc-----------------CcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCC
Confidence            677788999999977654421                 122444444433333 46788889999999999876554111


Q ss_pred             ccCchHHHHHHH-----------------------------HHHc--CCEEEEE--------------------------
Q 007454          194 YESEAVEAMIRT-----------------------------SEKR--GARVMSA--------------------------  216 (603)
Q Consensus       194 ~es~sV~~~~~~-----------------------------a~~~--Ga~V~~~--------------------------  216 (603)
                      .-+++-..+...                             .++.  |.+|+.+                          
T Consensus       119 Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y  198 (493)
T PRK13580        119 SGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSY  198 (493)
T ss_pred             CcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEec
Confidence            111111111111                             1111  4455444                          


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC--
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS--  293 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls--  293 (603)
                      +++..++.+|.+++++.+..      .+.++++.++||..+ ..|++.| ++|+++|++++||++|.+|.  ...++-  
T Consensus       199 ~vd~~~g~iD~d~l~~~~~~------~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gl--igg~~~~~  269 (493)
T PRK13580        199 GVDPDTGLLDYDEIAALARE------FKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGL--VAGKVFTG  269 (493)
T ss_pred             ccCcccCccCHHHHHHHHhh------cCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhce--eccccchh
Confidence            33434678999999999974      578999999999955 8899866 58999999999999999998  455541  


Q ss_pred             ----CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454          294 ----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       294 ----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                          ..++||+++|+||+|++ |.| |++++++++.+.|... .                              |    +
T Consensus       270 ~~~~~~~~D~vtgT~hKaL~G-P~G-G~I~~~~~l~~~L~~a-~------------------------------P----~  312 (493)
T PRK13580        270 DEDPVPHADIVTTTTHKTLRG-PRG-GLVLAKKEYADAVDKG-C------------------------------P----L  312 (493)
T ss_pred             hcCCCCCCcEEEeCChhhccC-CCe-EEEEecHHHHHHHhhC-C------------------------------C----c
Confidence                23799999999998733 887 9999998765544210 0                              0    1


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV  449 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~  449 (603)
                      ..|++..+.+++.+                                        .++..+.+-+.....+++...+++|.
T Consensus       313 i~gg~l~p~iAA~a----------------------------------------vAl~e~~~~ef~~y~~~l~~Na~~La  352 (493)
T PRK13580        313 VLGGPLPHVMAAKA----------------------------------------VALAEARTPEFQKYAQQVVDNARALA  352 (493)
T ss_pred             ccCCCccHHHHHHH----------------------------------------HHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            13344444454443                                        34554443344567888999999999


Q ss_pred             HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      +.|.++      |.+++   +.   ....+||.+.+.+.+   +....+++.+.+.||.+..-   .++..         
T Consensus       353 ~~L~~~------G~~vv---~g---gTdshIV~V~lg~~~---~~g~~a~~~L~e~GI~vn~i---~~Ptv---------  405 (493)
T PRK13580        353 EGFLKR------GARLV---TG---GTDNHLVLIDVTSFG---LTGRQAESALLDAGIVTNRN---SIPSD---------  405 (493)
T ss_pred             HHHHhc------CCCcc---CC---CCCCCEEEEEeCCHH---HHHHHHHHHHHHCCeEEccc---cCCCC---------
Confidence            999875      43332   21   124689999986632   22335666777889987421   11110         


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt----~eDVd~l~~~l~~~l~~  583 (603)
                                   ..     +......||+++..+|+    ++||++++++|.+.++.
T Consensus       406 -------------p~-----g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~  445 (493)
T PRK13580        406 -------------PN-----GAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN  445 (493)
T ss_pred             -------------CC-----CCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence                         00     11123579999999775    99999999999998864

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.75  E-value=2.7e-17  Score=178.14  Aligned_cols=149  Identities=13%  Similarity=0.112  Sum_probs=104.7

Q ss_pred             ccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCch------------------------HHHHHHHHHHcCCEEEEEecc
Q 007454          164 HGGQESGLESAMKKRIMDFLNISENDYVYDYESEA------------------------VEAMIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       164 ~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~s------------------------V~~~~~~a~~~Ga~V~~~~~~  219 (603)
                      |++......++.++++++++|+. ..+++..-..+                        ...+...+++.|+++..++..
T Consensus        48 y~r~~~p~~~~le~~lA~l~g~~-~~v~~~sG~~ai~~~l~~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~  126 (390)
T PRK08064         48 YSRSGNPTREALEDIIAELEGGT-KGFAFASGMAAISTAFLLLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT  126 (390)
T ss_pred             ccCCCChhHHHHHHHHHHHhCCC-CeEEECCHHHHHHHHHHHhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence            33334455678899999999986 45655321111                        112223445667777776642


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~D  298 (603)
                            +.+++++.|.+      +|++|.+...+|.||.+.|++.| ++|+++|+.|++|+++..+....++   .+++|
T Consensus       127 ------d~~~l~~~l~~------~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~---~~g~D  191 (390)
T PRK08064        127 ------NLEEVAQNIKP------NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL---DLGAD  191 (390)
T ss_pred             ------CHHHHHHhcCC------CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch---hhCCc
Confidence                  56778877753      68999999999999999999855 5899999999999998877521233   46899


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeC-CCCcCcC
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKK-STVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~  329 (603)
                      +++.|+||+|++ |.|  .|++++++ +..+.++
T Consensus       192 ivv~S~tK~~~G-~~~~laG~~v~~~~~~~~~l~  224 (390)
T PRK08064        192 VVLHSATKFLAG-HSDVLAGLAVVKDEELAQKLY  224 (390)
T ss_pred             EEEeecceeccC-CccceeEEEEeCCHHHHHHHH
Confidence            999999999886 777  47777764 3333343

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.75  E-value=1.7e-16  Score=168.08  Aligned_cols=305  Identities=11%  Similarity=-0.022  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-C----------------------chHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-S----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ...++.++.|++++|.  ++.++... +                      .........++..|+++..+++++.++.++
T Consensus        18 ~~~~~~~~~la~~~~~--~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d   95 (352)
T cd00616          18 PKVREFEKAFAEYLGV--KYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNID   95 (352)
T ss_pred             HHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcC
Confidence            3456788889999986  24444211 0                      111222334566799999999874467889


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC--CCCCCCcEEEEc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG--LSLVRPDFLICS  303 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld--ls~~~~Dflv~S  303 (603)
                      .++|++.+..      +++++.+.   |.+|...|++.| ++|+++|+++++|++|..|.  ...+  +.. ..|+.++|
T Consensus        96 ~~~l~~~i~~------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~--~~~~~~~~~-~~d~~~~S  163 (352)
T cd00616          96 PELIEAAITP------RTKAIIPV---HLYGNPADMDAIMAIAKRHGLPVIEDAAQALGA--TYKGRKVGT-FGDAGAFS  163 (352)
T ss_pred             HHHHHHhcCc------CCeEEEEE---CCCCCcCCHHHHHHHHHHcCCeEEEECCCCCCC--eECCEEccc-CcceeEEc
Confidence            9999998853      57888775   479999999855 58999999999999999886  2222  111 26999999


Q ss_pred             cc--ccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          304 FY--QIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       304 ~h--K~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      +|  |+++. |. .|+++.++ ++.+.+++...+|.....    ..          ++..  ...   +..++.++..  
T Consensus       164 ~~~~K~~~~-~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~--~~~---~~~~~~~~~a--  220 (352)
T cd00616         164 FHPTKNLTT-GE-GGAVVTNDEELAERARLLRNHGRDRDR----FK----------YEHE--ILG---YNYRLSEIQA--  220 (352)
T ss_pred             CCCCCCCcc-cC-ceEEEECCHHHHHHHHHHHHcCCCCCC----Cc----------cccc--eee---eccCcCHHHH--
Confidence            87  99974 33 35566654 454444432222221000    00          0000  000   1112222222  


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                                                                  ++......+++.+.++.+.+.+++.+.|.+++    
T Consensus       221 --------------------------------------------a~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~----  252 (352)
T cd00616         221 --------------------------------------------AIGLAQLEKLDEIIARRREIAERYKELLADLP----  252 (352)
T ss_pred             --------------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCC----
Confidence                                                        22222223567888889999999999998753    


Q ss_pred             CCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          461 EGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       461 ~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                          .++++++... ....++++|.+.+..+  +++..+.+.+.++||.+  +.+|.+...+...    .... .  +..
T Consensus       253 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~L~~~gI~~--~~~~~~~~~~~~~----~~~~-~--~~~  317 (352)
T cd00616         253 ----GIRLPDVPPGVKHSYHLYVIRLDPEAG--ESRDELIEALKEAGIET--RVHYPPLHHQPPY----KKLL-G--YPP  317 (352)
T ss_pred             ----CccCCCCCCCCceeeEEEEEEECCcCC--CCHHHHHHHHHHCCCCe--eeecCccccCHhh----hhcc-C--CCc
Confidence                3777776421 2356899999975312  35566666667789955  5677665443210    0000 0  000


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                      ....+.    .....+.||+|+++++|.+||++++++|+
T Consensus       318 ~~~~~a----~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         318 GDLPNA----EDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             CCChHH----HHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            000000    01223699999999999999999998873

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.75  E-value=6.3e-17  Score=187.23  Aligned_cols=270  Identities=11%  Similarity=0.041  Sum_probs=183.7

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      +...|.+|+.++++ ++|.+|.++|+++|...   ++++..|.+++.++..+...|++.| ++||++|+.|++|++|..+
T Consensus       608 a~~~GieVv~Vp~D-~~G~iDle~L~a~I~~~---~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a  683 (954)
T PRK12566        608 AQMAGMRVVIVECD-PDGNVDLDDLKAKAAAA---GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNA  683 (954)
T ss_pred             HHHCCCEEEEeccC-CCCCcCHHHHHHHhhcc---CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhh
Confidence            55679999999998 68999999999999731   2357777777777777777889855 5899999999999999987


Q ss_pred             CCCCCCC-CCCCCCcEEEEcccccCCCCCCceEEEEEeC-CCCcCcCCCCCC-CceeccccccccccccccCCCCCCccc
Q 007454          285 KDMDSFG-LSLVRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQ  361 (603)
Q Consensus       285 ~~m~~ld-ls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~  361 (603)
                      .  ..++ ..++++||++++.|||||. |.|.|.+++.. .+.+.|.|...+ +.+..   .+                 
T Consensus       684 ~--~~l~~Pg~~GADi~~~s~HKtf~~-P~G~GGP~vG~iav~~~L~pfLp~~P~~d~---~G-----------------  740 (954)
T PRK12566        684 Q--VGLARPADIGADVSHMNLHKTFCI-PHGGGGPGMGPIGVRAHLAPFVANHPVVPV---EG-----------------  740 (954)
T ss_pred             c--cCCCChhhcCCCEEEecCCcccCc-CccCCCCccchhhhhhhhhhhccCCCCcCC---CC-----------------
Confidence            6  5666 4789999999999999997 99999999998 776667765443 21110   00                 


Q ss_pred             CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454          362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG  441 (603)
Q Consensus       362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~  441 (603)
                        .+.   +.|+.+....-+.                                     -+.-+++.++..+|.+..+.+.
T Consensus       741 --~~~---r~ga~S~~~~gsa-------------------------------------~~l~~A~~Yi~~lG~eLk~aa~  778 (954)
T PRK12566        741 --PDP---NNGAVSAAPWGSA-------------------------------------SILPISWMYIAMMGPQLADASE  778 (954)
T ss_pred             --CCC---CCCceeecccchH-------------------------------------HHHHHHHHHHHHHCHHHHHHHH
Confidence              000   1233322211110                                     0011688888889988555555


Q ss_pred             --HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC--CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCc
Q 007454          442 --RCLINWLVNALMKLQHPNTEGNALVKIYGPKIR--FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI  517 (603)
Q Consensus       442 --~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~--~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~  517 (603)
                        ..+++|+.++|.+..       + +. |.+...  .....+..+.+++..|  ++...|++-+-++||...+-    .
T Consensus       779 ~ailnAnYla~rL~~~~-------~-v~-~~~~~~~~~hEfii~~~~l~~~~g--~~~~dvakRL~d~Gihapt~----~  843 (954)
T PRK12566        779 VAILSANYLANQLGGAF-------P-VL-YRGRNERVAHECILDLRPLKAQTG--ISEEDVAKRLMDYGFHAPTM----S  843 (954)
T ss_pred             HHHHHHHHHHHHhHhhC-------C-CC-cCCCCCCeeeEEEEEccccccccC--CCHHHHHHHHHHCCcEEeEE----e
Confidence              668999999997631       1 22 232210  0123333334443323  34444555444889986541    0


Q ss_pred             cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh-hhhcccccc
Q 007454          518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARWR  592 (603)
Q Consensus       518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~-~f~~~~~~~  592 (603)
                      +                               . . .+.+|++...+++.+|+|+|+++|..++++ +-|+.++|-
T Consensus       844 f-------------------------------P-v-~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~~v~~g~~~  886 (954)
T PRK12566        844 F-------------------------------P-V-PGTLMVEPTESESKAELDRFVEAMLSIRAEIGKVQEGNWP  886 (954)
T ss_pred             e-------------------------------c-c-CCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            0                               0 1 368999999999999999999999999988 667777763

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.73  E-value=9.5e-15  Score=172.54  Aligned_cols=268  Identities=13%  Similarity=0.087  Sum_probs=171.2

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG  283 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~  283 (603)
                      .+...|.+|+.++++ .+|.+|.++|+++|...   +.++..|.++.-+...+...|++.| ++||++|++|+||+++.+
T Consensus       606 sa~~~G~~vv~v~~d-~~G~iD~~~L~~~i~~~---~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~  681 (954)
T PRK05367        606 SAVMAGMKVVVVACD-ENGNIDLDDLRAKAEEH---ADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMN  681 (954)
T ss_pred             HHHHCCCEEEEECCC-CCCCcCHHHHHHHHhcc---CCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChh
Confidence            455679999999988 57999999999999742   1245555666655553345799855 589999999999999986


Q ss_pred             CCCCCCCC-CCCCCCcEEEEcccccCCCCCC-----ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454          284 PKDMDSFG-LSLVRPDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET  357 (603)
Q Consensus       284 ~~~m~~ld-ls~~~~Dflv~S~hK~fG~~P~-----G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~  357 (603)
                      +.  ..+. ..++++|++++|.|||||. |.     |+|+|++|+..    .|...|..+..  . .     +       
T Consensus       682 al--~~l~~pg~~GADi~~~s~HK~f~~-P~G~GGPg~G~l~vr~~l----~p~lpg~~v~~--~-~-----~-------  739 (954)
T PRK05367        682 AQ--VGLARPGDIGADVSHLNLHKTFCI-PHGGGGPGVGPIGVKAHL----APFLPGHPVQI--A-G-----G-------  739 (954)
T ss_pred             hc--cCCCChhhcCCCEEEecCcccCCC-CcCCCCCceEEEeecccc----cccCCCCccCc--C-C-----C-------
Confidence            64  2332 2368999999999999753 44     57799999644    44444422110  0 0     0       


Q ss_pred             CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHH
Q 007454          358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI  437 (603)
Q Consensus       358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i  437 (603)
                      +      .    ..|+...+. ++.+            ..+.                        .+.-++..+|.+.+
T Consensus       740 ~------~----~~g~v~ta~-~g~a------------l~~~------------------------~a~~yi~~~G~~Gl  772 (954)
T PRK05367        740 E------T----GIGAVSAAP-FGSA------------SILP------------------------ISWMYIRMMGAEGL  772 (954)
T ss_pred             C------C----CcCcchhHH-HHHH------------HHHH------------------------HHHHHHHHHCHHHH
Confidence            0      0    013333111 1111            0011                        46667777786666


Q ss_pred             HHHHH---HHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEE-EccCCCCccCHHHHHHHHhcCCcEEeeCc
Q 007454          438 SRRGR---CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFN-VFDWKREKIEPVLVQKLADRENISLSYGS  513 (603)
Q Consensus       438 ~~r~~---~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFn-v~~~~g~~v~~~~V~~Lad~~gI~lr~G~  513 (603)
                      .+..+   .+++|+.++|.+..       + +...||....-+..++.+. ++...|  +....|.+-+.++||...+-+
T Consensus       773 r~~a~~~~~~A~Yl~~~L~~~~-------~-~~~~~~~~~~~~e~i~~~~~~~~~~g--~~~~di~krL~d~G~~~~t~~  842 (954)
T PRK05367        773 RQATEVAILNANYIAKRLKDHY-------P-VLYTGANGRVAHECILDLRPLKESTG--ITVDDIAKRLIDYGFHAPTMS  842 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc-------C-ccccCCCCCcccceEEEeecccccCC--CCHHHHHHHHHHCCCeEeecC
Confidence            66555   89999999997631       1 3334443222334555552 332222  334556666678899876521


Q ss_pred             ccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh-hhhcccccc
Q 007454          514 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA-DFVEKARWR  592 (603)
Q Consensus       514 ~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~-~f~~~~~~~  592 (603)
                      +                                    .. .+.+++++.-++|.+|+|+|++++..+.++ .-|+.++|-
T Consensus       843 ~------------------------------------pv-~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~~~~~~  885 (954)
T PRK05367        843 F------------------------------------PV-AGTLMVEPTESESKAELDRFCDAMIAIRAEIDEVEAGEWP  885 (954)
T ss_pred             C------------------------------------cc-CCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            0                                    01 368999999999999999999999999887 556666653

>PLN02880 tyrosine decarboxylase

Probab=99.73  E-value=1.2e-15  Score=169.57  Aligned_cols=274  Identities=14%  Similarity=0.112  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHcCC---EEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCc
Q 007454          199 VEAMIRTSEKRGA---RVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDW  273 (603)
Q Consensus       199 V~~~~~~a~~~Ga---~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~  273 (603)
                      +..+.+++.-.|.   .|+.+|.+. .+++++.++|++.|...++....+-+|+-++-+-.||.+-|++.|+ +|+++|+
T Consensus       191 H~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~i  270 (490)
T PLN02880        191 HSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGM  270 (490)
T ss_pred             hHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCC
Confidence            3344455555565   377788762 3578999999999975433334567888999999999999999775 8999999


Q ss_pred             EEEEeccccCCCCCCCC-----CCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccc
Q 007454          274 HILIDACALGPKDMDSF-----GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLW  347 (603)
Q Consensus       274 ~vlvDAaq~~~~~m~~l-----dls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~  347 (603)
                      ++|||||..++-  ...     .+.. .++|++++++|||++. |.|.|+||+|+... .+++.....         .|.
T Consensus       271 wlHVDaA~gg~~--~~~~~~~~~l~gie~aDSit~d~HKwl~~-P~~~g~llvr~~~~-l~~~~~~~~---------~Yl  337 (490)
T PLN02880        271 WFHVDAAYAGSA--CICPEYRHYIDGVEEADSFNMNAHKWFLT-NFDCSLLWVKDRNA-LIQSLSTNP---------EFL  337 (490)
T ss_pred             EEEEehhhHHHH--HhCHHHHHHhcCchhcCEEEECchhhcCC-CccEEEEEEeCHHH-HHHHHccCH---------HHh
Confidence            999999876653  111     2343 4799999999999887 99999999996321 112111110         000


Q ss_pred             cccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH
Q 007454          348 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD  427 (603)
Q Consensus       348 ~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald  427 (603)
                       ..+            ..   ...++.++... ++..                              .++ +    +|+.
T Consensus       338 -~~~------------~~---~~~~~~~~~~~-~i~~------------------------------~rr-~----~alk  365 (490)
T PLN02880        338 -KNK------------AS---QANSVVDYKDW-QIPL------------------------------GRR-F----RSLK  365 (490)
T ss_pred             -cCc------------cc---cccCCCChhcc-CcCC------------------------------CCc-c----cHHH
Confidence             000            00   01122222210 0000                              000 0    3455


Q ss_pred             H---HHhcCHHHHHHHHH---HHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCC-----CccCHH
Q 007454          428 Q---VDSLGLTMISRRGR---CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR-----EKIEPV  496 (603)
Q Consensus       428 ~---~~~iGl~~i~~r~~---~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g-----~~v~~~  496 (603)
                      +   ++.+|.+.+.++++   .|++++.+.|.+.+        .++++.|.    ..++|+|.++....     ..+...
T Consensus       366 lw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~--------~~el~~~~----~~~iv~Fr~~~~~~~~~~~~~~n~~  433 (490)
T PLN02880        366 LWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDS--------RFEVVTPR----IFSLVCFRLVPPKNNEDNGNKLNHD  433 (490)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC--------CEEEecCC----ceEEEEEEEeCCCCChhhHHHHHHH
Confidence            4   45579999999998   99999999998642        37888864    36799999975321     111223


Q ss_pred             HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCC-HHHHHHHHH
Q 007454          497 LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLAN-FEDVYRLWA  575 (603)
Q Consensus       497 ~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt-~eDVd~l~~  575 (603)
                      +.++|.+...|.++...                                     -.+..++|+|++.++| .+||+++++
T Consensus       434 l~~~l~~~g~~~v~~t~-------------------------------------~~g~~~lR~~~~n~~tt~~di~~~~~  476 (490)
T PLN02880        434 LLDAVNSSGKIFISHTV-------------------------------------LSGKYVLRFAVGAPLTEERHVTAAWK  476 (490)
T ss_pred             HHHHHHhCCCEEEEEEE-------------------------------------ECCEEEEEEEecCCCCCHHHHHHHHH
Confidence            44444444455544210                                     0123589999987777 599999999


Q ss_pred             HHHHHHhhhhh
Q 007454          576 FVAQFLDADFV  586 (603)
Q Consensus       576 ~l~~~l~~~f~  586 (603)
                      .|.+..++-+.
T Consensus       477 ~i~~~~~~~~~  487 (490)
T PLN02880        477 VLQDEASKLLG  487 (490)
T ss_pred             HHHHHHHHHHH
Confidence            99988766543

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.72  E-value=1.6e-15  Score=160.53  Aligned_cols=320  Identities=14%  Similarity=0.146  Sum_probs=193.3

Q ss_pred             CCceeeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~tl----~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      +++-|+|.++..+    .++.+++++.+++...        ..          +...+...+|  .....++.|++|+++
T Consensus        14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~--------~~----------~~~~~~~~~g--~~~~~~~l~~~la~~   73 (360)
T TIGR00858        14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQY--------GA----------GSTASRLVSG--NSPLHEELEEELAEW   73 (360)
T ss_pred             CCceEEecccCCcccCCCCHHHHHHHHHHHHhc--------CC----------CCCCcCcccC--CcHHHHHHHHHHHHH
Confidence            4556788777643    4478888877654321        00          1111111111  124567899999999


Q ss_pred             cCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC---------------ccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          183 LNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP---------------RLRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       183 lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~---------------~g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      ++. ++.+++...+.++..++..+.+.|.+|...+..++               -..++.++|++.+....  ..+++++
T Consensus        74 ~~~-~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~~--~~~~~~v  150 (360)
T TIGR00858        74 KGT-EAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNR--GERRKLI  150 (360)
T ss_pred             hCC-CCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHcc--cCCCeEE
Confidence            985 45666655444433333333345555554322110               01247888998886421  1257899


Q ss_pred             EEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-CCC------CCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 007454          248 VFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-MDS------FGLSLVRPDFLICSFYQIFGENPSGFGCLF  319 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-m~~------ldls~~~~Dflv~S~hK~fG~~P~G~G~L~  319 (603)
                      +++..+|.||.+.|++.| ++|+++|+++++|.++..+.- ...      .++...+.|+++.|++|+||  |.| |.++
T Consensus       151 ~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~--~~g-G~~~  227 (360)
T TIGR00858       151 VTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALG--SYG-AYVA  227 (360)
T ss_pred             EEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhh--ccC-cEEE
Confidence            999999999999999966 589999999999999865430 000      12333467999999999999  667 8877


Q ss_pred             EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      .+++.++.+.+..            ..+                  .  +..+ .+...++++.                
T Consensus       228 ~~~~~~~~~~~~~------------~~~------------------~--~~~~-~~~~~~~a~~----------------  258 (360)
T TIGR00858       228 GSQALIDYLINRA------------RTL------------------I--FSTA-LPPAVAAAAL----------------  258 (360)
T ss_pred             cCHHHHHHHHHhC------------ccc------------------e--ecCC-CCHHHHHHHH----------------
Confidence            7766543332100            000                  0  1112 2222332221                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              +++++...  ++...++.+.+.++|.+.|.++.         ++++.     ..++
T Consensus       259 ------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~---------~~~~~-----~~~~  298 (360)
T TIGR00858       259 ------------------------AALELIQE--EPWRREKLLALIARLRAGLEALG---------FTLMP-----SCTP  298 (360)
T ss_pred             ------------------------HHHHHHhh--CHHHHHHHHHHHHHHHHHHHHcC---------CccCC-----CCCC
Confidence                                    46665543  35677899999999999998752         23332     2467


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      ++.+.+.+.    .+...+.+.+.++||.++.+.....                                 ..+.+.||+
T Consensus       299 ~~~~~~~~~----~~~~~~~~~l~~~gI~v~~~~~~~~---------------------------------~~~~~~iRi  341 (360)
T TIGR00858       299 IVPVIIGDN----ASALALAEELQQQGIFVGAIRPPTV---------------------------------PAGTSRLRL  341 (360)
T ss_pred             EEEEEeCCH----HHHHHHHHHHHHCCeeEeeeCCCCC---------------------------------CCCCceEEE
Confidence            888887531    1122344444567999986422100                                 011248999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q 007454          560 SLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~  578 (603)
                      |+++++|.+|++++++.|+
T Consensus       342 s~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       342 TLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             EEcCCCCHHHHHHHHHhhC
Confidence            9999999999999998763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.70  E-value=3.9e-15  Score=159.42  Aligned_cols=322  Identities=16%  Similarity=0.188  Sum_probs=192.7

Q ss_pred             CCceeeecCCC---CC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI---GL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~---tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      .++-|+|.++.   ++ .++.+++++.+.+...                  ..+++.+....|  .....++.++.++++
T Consensus        37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~g--~~~~~~~l~~~la~~   96 (385)
T PRK05958         37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRY------------------GAGSGGSRLVTG--NSPAHEALEEELAEW   96 (385)
T ss_pred             CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhc------------------CCCCCCcCcccC--CcHHHHHHHHHHHHH
Confidence            45778888866   33 4678888877643211                  001111111111  134567899999999


Q ss_pred             cCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC---------c------cccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          183 LNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP---------R------LRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       183 lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~---------~------g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      ++. ++.+++...+++...++....+.|.+|...++..+         .      ...+.+++++.+...   ++.+.++
T Consensus        97 ~~~-~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~~---~~~~~lv  172 (385)
T PRK05958         97 FGA-ERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEALLAKW---RAGRALI  172 (385)
T ss_pred             hCC-CcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCCCCHHHHHHHHHhc---cCCCeEE
Confidence            994 55566554333332222333344555544322110         0      013678899888642   1247888


Q ss_pred             EEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC------CCC-CCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 007454          248 VFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD------MDS-FGLSLVRPDFLICSFYQIFGENPSGFGCLF  319 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~------m~~-ldls~~~~Dflv~S~hK~fG~~P~G~G~L~  319 (603)
                      ++....|.||.+.|++.| ++|+++|+++++|.+|..+.-      +.. .++.....++++.|++|+||  +.| |.++
T Consensus       173 i~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G-g~~~  249 (385)
T PRK05958        173 VTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG--SSG-AAVL  249 (385)
T ss_pred             EEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc--cCC-cEEE
Confidence            898899999999999866 589999999999999865420      000 13333344588999999999  667 7776


Q ss_pred             EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      .+++..+.+....           .. +                  .  + .+..+...++++.                
T Consensus       250 ~~~~~~~~~~~~~-----------~~-~------------------~--~-~~~~~~~~~aa~~----------------  280 (385)
T PRK05958        250 GSETLIDYLINRA-----------RP-F------------------I--F-TTALPPAQAAAAR----------------  280 (385)
T ss_pred             cCHHHHHHHHHhC-----------cc-c------------------e--e-cCCCCHHHHHHHH----------------
Confidence            6655433221100           00 0                  0  1 1112223322221                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              ++++.+...  +.+.++.+.+.+++.+.|.++      |   ++++.     ..++
T Consensus       281 ------------------------aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~------~---~~~~~-----~~~~  320 (385)
T PRK05958        281 ------------------------AALRILRRE--PERRERLAALIARLRAGLRAL------G---FQLMD-----SQSA  320 (385)
T ss_pred             ------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc------C---CCcCC-----CCCC
Confidence                                    467665543  567788999999999999875      2   23332     2467


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      ++.|.+++.   ....++.++| .++||.++.+....                                 ...+..+||+
T Consensus       321 ~~~~~~~~~---~~~~~~~~~l-~~~gI~v~~~~~~~---------------------------------~~~~~~~lRi  363 (385)
T PRK05958        321 IQPLIVGDN---ERALALAAAL-QEQGFWVGAIRPPT---------------------------------VPAGTSRLRI  363 (385)
T ss_pred             EEEEEeCCH---HHHHHHHHHH-HHCCceEecccCCC---------------------------------CCCCCceEEE
Confidence            888888641   1122345555 45799997531100                                 0011258999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 007454          560 SLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      |++.++|.+|++++++.|+++|
T Consensus       364 s~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        364 TLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             EecCCCCHHHHHHHHHHHHhcC
Confidence            9999999999999999998764

>PLN02483 serine palmitoyltransferase

Probab=99.67  E-value=2.5e-14  Score=159.31  Aligned_cols=285  Identities=12%  Similarity=0.181  Sum_probs=179.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc---------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE---------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e---------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ....++.+++||+++|. ++.++|...                     ......++..++..|++++.++.+      +.
T Consensus       145 ~~~~~ele~~lA~~~g~-~~ai~~~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~------d~  217 (489)
T PLN02483        145 TKLHRELEELVARFVGK-PAAIVFGMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN------TP  217 (489)
T ss_pred             cHHHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC------CH
Confidence            35677899999999995 567766421                     112333445566778888877643      45


Q ss_pred             HHHHHHHhhcC----CC--CC-CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-------CCCCCC
Q 007454          228 EKLRKMVVSKG----KK--KK-QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-------MDSFGL  292 (603)
Q Consensus       228 ~~L~~~l~~~~----~~--~~-~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-------m~~ldl  292 (603)
                      ++|++.|....    .+  .+ ++.++++-.+.|++|.+.+++.+ ++|+++|+++++|.++..+..       ..-+++
T Consensus       218 ~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v  297 (489)
T PLN02483        218 SHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGV  297 (489)
T ss_pred             HHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCC
Confidence            67776665210    00  11 23478888899999999999855 689999999999999865420       001344


Q ss_pred             CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          293 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      ...++|+++.|++|.||  +.| |.++.++++++.|.....+ .                                .-.+
T Consensus       298 ~~~~~dI~~~SfSKs~g--~~G-G~i~~~~~li~~l~~~~~~-~--------------------------------~~~~  341 (489)
T PLN02483        298 DPADVDIMMGTFTKSFG--SCG-GYIAGSKELIQYLKRTCPA-H--------------------------------LYAT  341 (489)
T ss_pred             CcccCcEEEEecchhcc--cCc-eEEEcCHHHHHHHHHhCcc-c--------------------------------cccC
Confidence            33468999999999999  667 8888777776555421100 0                                0112


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-C---HHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-G---LTMISRRGRCLINWL  448 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-G---l~~i~~r~~~L~~~L  448 (603)
                      +.+.+.+.+..                                        ++++.+... |   .....++++..+++|
T Consensus       342 ~~~p~~~~~~~----------------------------------------aaL~~l~~~~g~~~~~~~~~~l~~~~~~l  381 (489)
T PLN02483        342 SMSPPAVQQVI----------------------------------------SAIKVILGEDGTNRGAQKLAQIRENSNFF  381 (489)
T ss_pred             CcCHHHHHHHH----------------------------------------HHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence            22222222211                                        456654321 1   122345678888999


Q ss_pred             HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      .+.|.++      |   +.++++.    .++++.+-+.+..  . ......+|+ ++||.+....++..           
T Consensus       382 ~~~L~~~------G---~~v~~~~----~sp~~~l~l~~~~--~-~~~~~~~Ll-~~GI~v~~~~fp~~-----------  433 (489)
T PLN02483        382 RSELQKM------G---FEVLGDN----DSPVMPIMLYNPA--K-IPAFSRECL-KQNVAVVVVGFPAT-----------  433 (489)
T ss_pred             HHHHHHC------C---CcccCCC----CCCEEEEEECCHH--H-HHHHHHHHH-HCCcEEeeeCCCCC-----------
Confidence            9999875      2   4566652    3567777665421  1 123455555 46999874222211           


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFV  586 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~  586 (603)
                                            ....+.+|++++..+|.|||+++++.|+++++...+
T Consensus       434 ----------------------p~~~~~vRi~isa~~t~edId~~l~~L~~~~~~~~~  469 (489)
T PLN02483        434 ----------------------PLLLARARICISASHSREDLIKALEVISEVGDLVGI  469 (489)
T ss_pred             ----------------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHhCc
Confidence                                  011258999999999999999999999999876444

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.65  E-value=4.4e-14  Score=151.99  Aligned_cols=285  Identities=12%  Similarity=0.102  Sum_probs=175.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCCc---------------cccCHHHHHHHH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR---------------LRINSEKLRKMV  234 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~---------------g~i~~~~L~~~l  234 (603)
                      ++.++.++.+++++|++ ++++++..+++...+.....+.|.+|..-...++.               ...+.++|++.+
T Consensus        87 ~l~~~l~~~la~~~g~~-~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i  165 (397)
T PRK06939         87 DLHKELEEKLAKFLGTE-DAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQL  165 (397)
T ss_pred             HHHHHHHHHHHHHhCCC-cEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCCCCHHHHHHHH
Confidence            56778999999999975 67777655444443333333445554443221110               014778888888


Q ss_pred             hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC-------CCCCCCCCCcEEEEcccc
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD-------SFGLSLVRPDFLICSFYQ  306 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~-------~ldls~~~~Dflv~S~hK  306 (603)
                      ......+.++++++..++.|.+|...|++.+ .+|+++|+++++|.++..+..-.       ..++. .++|+++.|++|
T Consensus       166 ~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~~i~~~S~sK  244 (397)
T PRK06939        166 KEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVM-DRVDIITGTLGK  244 (397)
T ss_pred             HhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCC-CCCcEEEEECHH
Confidence            6311112368899998899999999999855 58999999999999985432000       01222 257999999999


Q ss_pred             cCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhh
Q 007454          307 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ  386 (603)
Q Consensus       307 ~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~  386 (603)
                      +|++ +. .|.++.+++.++.+.....           . +                     .-.++.+...++++.   
T Consensus       245 ~~~g-~r-~G~v~~~~~~~~~l~~~~~-----------~-~---------------------~~~~~~~~~~~~a~~---  286 (397)
T PRK06939        245 ALGG-AS-GGYTAGRKEVIDWLRQRSR-----------P-Y---------------------LFSNSLAPAIVAASI---  286 (397)
T ss_pred             HhCc-cC-ceEEEeCHHHHHHHHHhCc-----------c-c---------------------cccCCCCHHHHHHHH---
Confidence            9963 54 5888888776654432100           0 0                     012222222222211   


Q ss_pred             cCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE
Q 007454          387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV  466 (603)
Q Consensus       387 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv  466 (603)
                                                           ++++.+..  .+.+.++.+.+.+++.+.|.++.         +
T Consensus       287 -------------------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~~---------~  318 (397)
T PRK06939        287 -------------------------------------KVLELLEE--SDELRDRLWENARYFREGMTAAG---------F  318 (397)
T ss_pred             -------------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcC---------C
Confidence                                                 45666543  35677888899999999998752         2


Q ss_pred             EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454          467 KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR  546 (603)
Q Consensus       467 ~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  546 (603)
                      .++.+     .++++.+.+.+.   .-..+++++|+++ ||.++.+.+..                              
T Consensus       319 ~~~~~-----~~~~~~~~~~~~---~~~~~~~~~L~~~-gI~v~~~~~~~------------------------------  359 (397)
T PRK06939        319 TLGPG-----EHPIIPVMLGDA---KLAQEFADRLLEE-GVYVIGFSFPV------------------------------  359 (397)
T ss_pred             CcCCC-----CCCEEEEEECCH---HHHHHHHHHHHHC-CceEeeeCCCC------------------------------
Confidence            22222     345665555431   1122345566654 99988432210                              


Q ss_pred             ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                         ...+.+.||++++++++.+||+++++.|++++.+.
T Consensus       360 ---~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        360 ---VPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             ---CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence               00112589999999999999999999999987664

>PLN02271 serine hydroxymethyltransferase

Probab=99.64  E-value=8.8e-14  Score=153.63  Aligned_cols=340  Identities=14%  Similarity=0.086  Sum_probs=209.0

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcE---
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDY---  190 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~---  190 (603)
                      |+-...|+.|++++-..+++-                 |.-+.|...+.-|.. ..+++.-+.+++.++||++..++   
T Consensus       155 ASEN~~S~av~~algS~ltnk-----------------YaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaN  217 (586)
T PLN02271        155 ASENFVCRAVMEALGSHLTNK-----------------YSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVN  217 (586)
T ss_pred             cccccCCHHHHHHhcCccccc-----------------CCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccc
Confidence            666788999999977655421                 122445444433333 36788889999999999987544   


Q ss_pred             EEe-------------------------ccCchHHHHH------HHHHHcCCEEEEEe--ccCCccccCHHHHHHHHhhc
Q 007454          191 VYD-------------------------YESEAVEAMI------RTSEKRGARVMSAE--FSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       191 vf~-------------------------~es~sV~~~~------~~a~~~Ga~V~~~~--~~~~~g~i~~~~L~~~l~~~  237 (603)
                      |-.                         -++..+..-.      ..+...|..+..++  ++..++.||.++|++.+.. 
T Consensus       218 VQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~-  296 (586)
T PLN02271        218 VQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD-  296 (586)
T ss_pred             eeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh-
Confidence            111                         1111111100      11122354445554  5556789999999996543 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccCCCCCC
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls---~~~~Dflv~S~hK~fG~~P~  313 (603)
                          .+++|+++.+.++.  ...|++.++ +|+++|+++++|++|.+|.  +..++-   ..++|+++++.|||+.+ |.
T Consensus       297 ----~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGL--Ia~g~~~sP~~~aDvvt~TTHKtLrG-Pr  367 (586)
T PLN02271        297 ----FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGL--VAAKECVNPFDYCDIVTSTTHKSLRG-PR  367 (586)
T ss_pred             ----cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccc--cccCcCCCCCcCCcEEEeCCcccCCC-CC
Confidence                37999999888877  778899775 8999999999999999997  555532   23699999999999865 99


Q ss_pred             ceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                      | |++++|++....+++...+ |.-...+.   +.  .     .+.. .--|.   +++|+.|.. |+|++         
T Consensus       368 G-G~I~~r~~~~~~~~g~~gs~s~~~~~~d---~~--~-----kI~~-aVfPg---lqgGphn~~-IAalA---------  422 (586)
T PLN02271        368 G-GIIFYRKGPKLRKQGMLLSHGDDNSHYD---FE--E-----KINF-AVFPS---LQGGPHNNH-IAALA---------  422 (586)
T ss_pred             c-eEEEecccccccccCCccccccccccHH---HH--H-----Hhhc-ccCCc---cccChhHHH-HHHHH---------
Confidence            9 8888888765433332222 11000000   00  0     0000 00122   578888777 88877         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                     .|++.+..-....-.+++..-++.|-+.|.+.      |.++|.  |- 
T Consensus       423 -------------------------------valkea~~~efk~Ya~QVv~NAkaLA~~L~~~------G~~vv~--gg-  462 (586)
T PLN02271        423 -------------------------------IALKQVATPEYKAYMQQVKKNAQALASALLRR------KCRLVT--GG-  462 (586)
T ss_pred             -------------------------------HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC------CCeEee--CC-
Confidence                                           46665544344445555555566666677653      444432  32 


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                         .....|-..+... |  ++-..+++++++.||.+---.   .+. +.                           ...
T Consensus       463 ---TdnHlvLvDl~~~-g--~~G~~ae~~Le~~~I~~Nkn~---iP~-d~---------------------------~~~  505 (586)
T PLN02271        463 ---TDNHLLLWDLTTL-G--LTGKNYEKVCEMCHITLNKTA---IFG-DN---------------------------GTI  505 (586)
T ss_pred             ---CCcceeeecCccc-C--CCHHHHHHHHHHcCeEecccc---CCC-CC---------------------------CCC
Confidence               2246676666442 1  445678899999999863110   000 00                           112


Q ss_pred             CCCEEEEecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454          553 GITVVTASLGYLAN----FEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       553 ~~g~VR~Slg~~tt----~eDVd~l~~~l~~~l~~  583 (603)
                      ..+.||+....+|+    ++|+..+.++|.+.++.
T Consensus       506 ~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~~  540 (586)
T PLN02271        506 SPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQI  540 (586)
T ss_pred             CCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence            23578888777774    69999999999988873

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.64  E-value=1.1e-13  Score=151.16  Aligned_cols=321  Identities=10%  Similarity=0.072  Sum_probs=189.5

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHH-HHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA-MKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~-aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-..+++.+++++...+...       |          ..+.+.+....|....+.+|+ +++++++++|.....+.+.
T Consensus        35 ~sen~~~p~v~~a~~~~~~~~-------~----------~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~   97 (416)
T PRK13034         35 ASENFTSPAVMEAQGSVLTNK-------Y----------AEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPH   97 (416)
T ss_pred             ccccCCCHHHHHHhcchhhcC-------C----------CCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecC
Confidence            444456999999876543110       1          113333444334334445555 9999999999864333223


Q ss_pred             ccCchHHHHHHHHHHcCCEEEEEe------------------------c--cCCccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          194 YESEAVEAMIRTSEKRGARVMSAE------------------------F--SWPRLRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       194 ~es~sV~~~~~~a~~~Ga~V~~~~------------------------~--~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      .-..+...++...-+.|.+|...+                        +  +..++.++.++|++.+..     .++++|
T Consensus        98 SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~klV  172 (416)
T PRK13034         98 SGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE-----HKPKLI  172 (416)
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh-----cCCeEE
Confidence            333444444444445666655422                        1  111334889999998853     146777


Q ss_pred             EEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          248 VFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls---~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ++..  .++|...|+..+ ++|+++|+.+++|+++..|.  ...+..   ...+|++++|+||++++ |.| |+++.+++
T Consensus       173 i~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~--~~~g~~~~~~~~~Di~~~s~~K~l~g-~~G-G~v~~~~~  246 (416)
T PRK13034        173 IAGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGL--VAAGEHPNPFPHAHVVTTTTHKTLRG-PRG-GMILTNDE  246 (416)
T ss_pred             EECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccC--cccCCCCCCCCCceEEEEeCcccCCC-CCC-eEEEECcH
Confidence            6643  347899999866 48999999999999987765  222221   12589999999999954 777 65555544


Q ss_pred             CC-cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          324 TV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       324 ~~-~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      .+ ..++...+.|+.                                  +++..+.++++.                   
T Consensus       247 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~aa~~-------------------  273 (416)
T PRK13034        247 EIAKKINSAVFPGLQ----------------------------------GGPLMHVIAAKA-------------------  273 (416)
T ss_pred             HHHHHHHhhcCCccc----------------------------------CCccHHHHHHHH-------------------
Confidence            32 223322221210                                  112222232222                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           .++..+...+.....+++..++++|.++|.++      |.   .+.++.   ...+++.
T Consensus       274 ---------------------~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~------G~---~~~~~~---~~t~i~~  320 (416)
T PRK13034        274 ---------------------VAFGEALQPEFKTYAKQVIANAQALAEVLKER------GY---DLVSGG---TDNHLLL  320 (416)
T ss_pred             ---------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc------CC---EeccCC---CCCcEEE
Confidence                                 23333222244566789999999999999876      33   333331   2467777


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      +.+.+..   .....+++.+.++||.++.-..  +.....                           ... ...+|+|++
T Consensus       321 v~~~~~~---~~~~~~~~~L~~~GI~v~~~~~--p~~~~~---------------------------p~~-~~~lR~~~~  367 (416)
T PRK13034        321 VDLRPKG---LSGKDAEQALERAGITVNKNTV--PGDTES---------------------------PFV-TSGIRIGTP  367 (416)
T ss_pred             EEcCCCC---CCHHHHHHHHHhCCcEEeccCC--CCCCcC---------------------------CCC-CCeeEeCcH
Confidence            7775432   3455676677788998863100  000000                           011 247999999


Q ss_pred             CCCC----HHHHHHHHHHHHHHHh
Q 007454          563 YLAN----FEDVYRLWAFVAQFLD  582 (603)
Q Consensus       563 ~~tt----~eDVd~l~~~l~~~l~  582 (603)
                      .+|+    ++||++++++|++.+.
T Consensus       368 ~~t~~~~~~~di~~l~~~l~~~~~  391 (416)
T PRK13034        368 AGTTRGFGEAEFREIANWILDVLD  391 (416)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9655    9999999999998876

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.63  E-value=6.1e-14  Score=150.69  Aligned_cols=281  Identities=14%  Similarity=0.147  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC---------------ccccCHHHHHHH
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP---------------RLRINSEKLRKM  233 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~---------------~g~i~~~~L~~~  233 (603)
                      .++.+++++++++++|. ++.++++..+++...++......|..|......++               -..++.+++++.
T Consensus        77 ~~l~~~l~~~l~~~~g~-~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~  155 (385)
T TIGR01825        77 LRLHEELEEKLAKFKKT-EAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYKHADMDDLDRV  155 (385)
T ss_pred             cHHHHHHHHHHHHHhCC-CcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeCCCCHHHHHHH
Confidence            35677888999999986 35566654443333333333344554443221110               013678888888


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-------CCCCCCCCCCCcEEEEccc
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-------MDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-------m~~ldls~~~~Dflv~S~h  305 (603)
                      |...  ..+++++|+++.+.|.||.+.|++.+ ++|+++|+++++|.++..+.-       ...+++. .+.||++.|++
T Consensus       156 l~~~--~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~s  232 (385)
T TIGR01825       156 LREN--PSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLS  232 (385)
T ss_pred             HHhh--ccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEecc
Confidence            8642  12368999999999999999999866 589999999999999865420       0013444 57899999999


Q ss_pred             ccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC-CCChhhhhhhhh
Q 007454          306 QIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA-TNTFSGPMSIEM  384 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G-T~n~~gi~gl~~  384 (603)
                      |+||  ..| |.++.+++.++.+....            .                   .   +..+ +.+....+++. 
T Consensus       233 K~~~--~~g-G~~~~~~~~~~~~~~~~------------~-------------------~---~~~~~~~~~~~~~a~~-  274 (385)
T TIGR01825       233 KAIG--VVG-GYAAGHKELIEYLKNRA------------R-------------------P---FLFSTAQPPAVVAALA-  274 (385)
T ss_pred             HHhh--cCC-CEEecCHHHHHHHHHhC------------c-------------------c---ccccCCCCHHHHHHHH-
Confidence            9999  445 76766655543332100            0                   0   0111 22333333322 


Q ss_pred             hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                             ++++.+.+  .....++.+.+.+++.+.|.++      |  
T Consensus       275 ---------------------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g--  305 (385)
T TIGR01825       275 ---------------------------------------AAVDELQR--SPELMERLWDNTRFFKAGLGKL------G--  305 (385)
T ss_pred             ---------------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C--
Confidence                                                   46665433  2345667778899999999875      2  


Q ss_pred             eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                       ++++.|     .++++.+.+...   .-..++.++|+++ ||.++.+.....                           
T Consensus       306 -~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~L~~~-gi~v~~~~~~~~---------------------------  348 (385)
T TIGR01825       306 -YDTGGS-----ETPITPVVIGDE---KAAQEFSRRLFDE-GIFAQSIVFPTV---------------------------  348 (385)
T ss_pred             -CCCCCC-----CCCEEEEEECCH---HHHHHHHHHHHHC-CcEEcccCCCCC---------------------------
Confidence             333433     245777665431   0112344556555 999874432110                           


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                            ..+...||+++++++|.|||+++++.|+++++.
T Consensus       349 ------~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~  381 (385)
T TIGR01825       349 ------PRGTARIRNIPTAEHTKDDLDQALDAYEKVGKE  381 (385)
T ss_pred             ------CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence                  112258999999999999999999999998754

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.63  E-value=2.2e-14  Score=152.02  Aligned_cols=258  Identities=12%  Similarity=0.136  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .+.|+.|++++|+++++++++.... ++                     ......++..|+++..++++ +++.++.++|
T Consensus        57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l  135 (346)
T TIGR01141        57 AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLD-EDGQLDLEDI  135 (346)
T ss_pred             HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccC-CCCCCCHHHH
Confidence            5799999999999999998754221 11                     12233456779999999886 4677899999


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC--CcEEEEecccc--CCCCCCCCCC-CCCCCcEEEEcc
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACAL--GPKDMDSFGL-SLVRPDFLICSF  304 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~--~~~~m~~ldl-s~~~~Dflv~S~  304 (603)
                      ++.+.      ++++++.++..+|.||..+|++.+ ++++..  |.++++|.++.  .... ..++. .....++++.|+
T Consensus       136 ~~~~~------~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~-~~~~~~~~~~~~i~~~S~  208 (346)
T TIGR01141       136 LVAID------DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEP-STLPLLAEYPNLIVLRTL  208 (346)
T ss_pred             HHhcC------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCc-cHHHHHhhCCCEEEEehh
Confidence            98764      368899999999999999999855 466655  99999999854  2110 01111 122335778899


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      +|+||  +.|  +|.+++++++.+.+++....            |                         +.+.++..  
T Consensus       209 sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~~------------~-------------------------~~~~~~~~--  247 (346)
T TIGR01141       209 SKAFG--LAGLRIGYAIANAEIIDALNKVRAP------------F-------------------------NLSRLAQA--  247 (346)
T ss_pred             hHhhh--chhhhceeeecCHHHHHHHHhccCC------------C-------------------------CCCHHHHH--
Confidence            99998  336  79999877765444421000            0                         01111111  


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                                                               .++..++.. .+..+.++.+.+++++++.|.++.     
T Consensus       248 -----------------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----  281 (346)
T TIGR01141       248 -----------------------------------------AAIAALRDDDFIEKTVEEINAERERLYDGLKKLP-----  281 (346)
T ss_pred             -----------------------------------------HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence                                                     122222222 256777888888999999998652     


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK  541 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~  541 (603)
                      |   ++++.+     .++.+.|.+++ +     .+.+.+.+.++||.++.|....                         
T Consensus       282 g---~~~~~~-----~g~~~~~~~~~-~-----~~~~~~~L~~~gI~v~~g~~f~-------------------------  322 (346)
T TIGR01141       282 G---LEVYPS-----DANFVLIRFPR-D-----ADALFEALLEKGIIVRDLNSYP-------------------------  322 (346)
T ss_pred             C---CEECCC-----cCCEEEEecCC-C-----HHHHHHHHHHCCeEEEeCCCcC-------------------------
Confidence            2   454432     46788888875 2     2334455556899999774320                         


Q ss_pred             cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                               .. .+.+|+|++   |.+|++++++.|
T Consensus       323 ---------~~-~~~iRls~~---~~~~i~~~~~~l  345 (346)
T TIGR01141       323 ---------GL-PNCLRITVG---TREENDRFLAAL  345 (346)
T ss_pred             ---------CC-CCeEEEecC---CHHHHHHHHHHh
Confidence                     11 368999977   899999999876

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.63  E-value=6e-15  Score=159.24  Aligned_cols=137  Identities=11%  Similarity=0.178  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEec-----------------------cCchHH-HHHHHHHHcCCEEEEEeccCCccccC
Q 007454          171 LESAMKKRIMDFLNISENDYVYDY-----------------------ESEAVE-AMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~-----------------------es~sV~-~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ..++.++++++++|+ ++.++|..                       ...+.. .+...+++.|+++.+++..      +
T Consensus        48 ~~~~le~~la~l~g~-~~~l~~~sG~~al~~~l~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~------d  120 (378)
T TIGR01329        48 TRTALESLLAKLDKA-DRAFAFSSGMAALDVITRLLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT------D  120 (378)
T ss_pred             HHHHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC------C
Confidence            356788888888887 33343321                       111221 1223455678887777652      6


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      .+++++.|.      ++|+++.+...+|.||.+.|++.| ++||++|+.+++|+++..|....++   .+++|++++|+|
T Consensus       121 ~~~le~~i~------~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l---~~g~Di~v~S~t  191 (378)
T TIGR01329       121 LDKVKAALG------PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL---ELGADIVYHSAT  191 (378)
T ss_pred             HHHHHHhcC------cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh---hcCCcEEEEecc
Confidence            788888875      368999999999999999999855 6899999999999999877622233   458999999999


Q ss_pred             ccCCCCCCc--eEEEEEeCCC
Q 007454          306 QIFGENPSG--FGCLFVKKST  324 (603)
Q Consensus       306 K~fG~~P~G--~G~L~vkk~~  324 (603)
                      |++++ |.|  .|+++++++.
T Consensus       192 K~l~G-~~~~~~G~v~~~~~~  211 (378)
T TIGR01329       192 KFLAG-HSDVMAGVLAVKGEE  211 (378)
T ss_pred             eeccC-CccceeEEEEeCcHH
Confidence            98875 777  8888887654

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.63  E-value=6.5e-14  Score=152.14  Aligned_cols=280  Identities=14%  Similarity=0.093  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHH--cCCEEEEEec-----------------cCCccccCHHH
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEK--RGARVMSAEF-----------------SWPRLRINSEK  229 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~--~Ga~V~~~~~-----------------~~~~g~i~~~~  229 (603)
                      .....+.++++++++|. ++.++|...+.+...++..+.+  .|..|..-..                 .|+.  .+.++
T Consensus        90 ~~~~~~l~~~la~~~g~-~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~--~d~~~  166 (407)
T PRK09064         90 NHYHVELERELADLHGK-EAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH--NDVAH  166 (407)
T ss_pred             HHHHHHHHHHHHHHhCC-CcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC--CCHHH
Confidence            35567889999999995 5666665443333333333221  2222221111                 0111  25678


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCC-C----CCCCCCCCcEE
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMD-S----FGLSLVRPDFL  300 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~-~----ldls~~~~Dfl  300 (603)
                      |++++...  ..+++++|++....|++|.+.|++.+ ++|+++|+++++|.++..|.   . . .    .++. ..+|++
T Consensus       167 le~~l~~~--~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~-g~g~~~~~~~~-~~~div  242 (407)
T PRK09064        167 LEELLAAA--DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPR-GGGIAERDGLM-DRIDII  242 (407)
T ss_pred             HHHHHHhc--cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCC-CCChHHhcCCC-CCCeEE
Confidence            88888631  11367899999999999999999865 58999999999999986331   0 0 0    1221 257999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      +.++.|.||  +.| |.++.++++++.+.... .+           +                 .   +..+.++ ..++
T Consensus       243 ~~t~sKa~g--~~G-G~~~~~~~~~~~l~~~~-~~-----------~-----------------~---~t~~~~~-~~~~  286 (407)
T PRK09064        243 EGTLAKAFG--VMG-GYIAGSAALVDAVRSYA-PG-----------F-----------------I---FTTSLPP-AIAA  286 (407)
T ss_pred             EEecchhhh--ccC-ceEecCHHHHHHHHHhC-cc-----------c-----------------c---ccCcCCH-HHHH
Confidence            999999999  556 77766666544332100 00           0                 0   1122222 2222


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      +..                                        ++++++++.  ....++++.++++|.+.|.++     
T Consensus       287 aa~----------------------------------------~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~-----  319 (407)
T PRK09064        287 AAL----------------------------------------ASIRHLKES--NEERERHQERAAKLKAALDAA-----  319 (407)
T ss_pred             HHH----------------------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-----
Confidence            211                                        477777654  344678889999999999875     


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                       |.   .++++     .++++.|.+.+.   .-..++.++|++++||.++...   .+.                     
T Consensus       320 -g~---~~~~~-----~~~iv~i~~~~~---~~~~~l~~~L~~~~gi~v~~~~---~p~---------------------  363 (407)
T PRK09064        320 -GI---PVMPN-----ESHIVPVMVGDP---EKCKKASDMLLEEHGIYVQPIN---YPT---------------------  363 (407)
T ss_pred             -CC---CCCCC-----CCCEEEEEeCCH---HHHHHHHHHHHHhCCEEEeeEC---CCC---------------------
Confidence             22   23332     367888887541   0112344556677899997531   100                     


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                               ...+...||+|++.++|.+|++++++.|+++++.
T Consensus       364 ---------~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~  397 (407)
T PRK09064        364 ---------VPRGTERLRITPTPFHTDEMIDHLVEALVEVWAR  397 (407)
T ss_pred             ---------CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence                     0112257999999999999999999999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.62  E-value=1.3e-13  Score=148.41  Aligned_cols=147  Identities=15%  Similarity=0.198  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCC--ccccCH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWP--RLRINS  227 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~--~g~i~~  227 (603)
                      ..+.|+.|++++|+++++++++.... +                     ..+....++..|+++..++++..  +..++.
T Consensus        68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~  147 (380)
T PRK06225         68 FPELRELILKDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTP  147 (380)
T ss_pred             hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCH
Confidence            45799999999999999997754221 1                     11223345677999998886421  347899


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEecccc---CCCCCCC-CCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACAL---GPKDMDS-FGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~---~~~~m~~-ldls~~~~Df  299 (603)
                      ++|++.+..      +++++.+...+|.||..+|.+   .+ +.|+++|+++++|.++.   .++  .+ ..+. -.-.+
T Consensus       148 ~~l~~~~~~------~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~-~~~~i  218 (380)
T PRK06225        148 ELVKENMDE------NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH--TLAAEYA-PEHTV  218 (380)
T ss_pred             HHHHhhcCC------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC--CchhhcC-CCCEE
Confidence            999988863      578888888899999999854   23 46899999999999752   122  11 1111 12356


Q ss_pred             EEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          300 LICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       300 lv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      ++.|+.|+||  +.|  +|++++++.+++.+.
T Consensus       219 ~~~s~SK~~g--~~G~RiG~i~~~~~l~~~~~  248 (380)
T PRK06225        219 TSYSFSKIFG--MAGLRIGAVVATPDLIEVVK  248 (380)
T ss_pred             EEeechhhcC--CccceeEEEecCHHHHHHHH
Confidence            7779999999  557  699998877654443

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.62  E-value=4.6e-14  Score=147.89  Aligned_cols=241  Identities=16%  Similarity=0.070  Sum_probs=160.1

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCH--HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEE
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINS--EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHIL  276 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~--~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vl  276 (603)
                      ...++..|.++..++.++ .+..+.  +.++..+.      ++++++.+++.+|.||..+|++.+    ++|+++|++++
T Consensus        97 ~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~------~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~i  169 (350)
T cd00609          97 EAAARLAGAEVVPVPLDE-EGGFLLDLELLEAAKT------PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILII  169 (350)
T ss_pred             HHHHHHCCCEEEEEeccc-ccCCccCHHHHHhhcC------ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEE
Confidence            445566778888888764 333333  44444332      468999999999999999998744    46899999999


Q ss_pred             EeccccCCCCC--CC---CCCCCCCCcEEEEcccccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceecccccccccccc
Q 007454          277 IDACALGPKDM--DS---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTD  350 (603)
Q Consensus       277 vDAaq~~~~~m--~~---ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~  350 (603)
                      +|+++.++..-  ..   ......+.|+++.|++|+||.++.++|++++++ ...+.+....                  
T Consensus       170 vD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~------------------  231 (350)
T cd00609         170 SDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL------------------  231 (350)
T ss_pred             EecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH------------------
Confidence            99987653200  11   335567789999999999973245689999887 4443332100                  


Q ss_pred             ccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH
Q 007454          351 EFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD  430 (603)
Q Consensus       351 ~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~  430 (603)
                                    .   ...++++..+..++.                                        .+++...
T Consensus       232 --------------~---~~~~~~~~~~~~~~~----------------------------------------~~l~~~~  254 (350)
T cd00609         232 --------------P---YTTSGPSTLSQAAAA----------------------------------------AALDDGE  254 (350)
T ss_pred             --------------H---hcccCCChHHHHHHH----------------------------------------HHHhCcH
Confidence                          0   122344555444332                                        3444332


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe
Q 007454          431 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS  510 (603)
Q Consensus       431 ~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr  510 (603)
                       .++.++.++++.+.+++.+.|.++..        ..+..    ...+..+.|.+.+.    .....+.+++.++||.++
T Consensus       255 -~~~~~~~~~~~~~~~~l~~~L~~~~~--------~~~~~----~~~g~~~~~~~~~~----~~~~~~~~~l~~~gi~i~  317 (350)
T cd00609         255 -EHLEELRERYRRRRDALLEALKELGP--------LVVVK----PSGGFFLWLDLPEG----DDEEFLERLLLEAGVVVR  317 (350)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHhcCC--------ccccC----CCccEEEEEecCCC----ChHHHHHHHHHhCCEEEe
Confidence             35788888999999999999987531        11111    23566777776653    234567888888999998


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                      .+..+..                                  .....+|++++.+  .|||++++++|+
T Consensus       318 ~~~~~~~----------------------------------~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         318 PGSAFGE----------------------------------GGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ccccccc----------------------------------CCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            6644321                                  1225899999999  999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN02721 threonine aldolase

Probab=99.60  E-value=8.4e-14  Score=147.47  Aligned_cols=119  Identities=13%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC-CCCCeeEEEEeC-ccccccccccH---H-HHHHHHhCCcEEEEe
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK-KKKQRGLFVFPL-HSRMTGARYPY---L-WMRIAQENDWHILID  278 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~-~~~~t~Lv~~~~-~Sn~TG~~~pl---~-~i~~a~e~g~~vlvD  278 (603)
                      .++..|+++..++.+ +++.++.++|++.|....+ ..++++++.+.. .+|.||..+|.   + +.++|+++|+++++|
T Consensus        99 ~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD  177 (353)
T PLN02721         99 ISTLGGVHPRTVKNN-EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHID  177 (353)
T ss_pred             hhhhcCceeEecCCC-cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEE
Confidence            345668888888776 4678999999999973110 013678888855 56779999985   3 345789999999999


Q ss_pred             ccccCCCC-CCCCCCC--CCCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          279 ACALGPKD-MDSFGLS--LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       279 Aaq~~~~~-m~~ldls--~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      +++..+.. +..+++.  ..++|++++|+||+||. |.| |+++.+++.++
T Consensus       178 ~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-~~G-~~~~~~~~~~~  226 (353)
T PLN02721        178 GARIFNASVALGVPVHRLVKAADSVSVCLSKGLGA-PVG-SVIVGSKSFIR  226 (353)
T ss_pred             chhhhcchhhhCCCHHHHhhhCCEEEEecccccCC-cee-eEEecCHHHHH
Confidence            98654310 0011221  23789999999999995 544 34555555443

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.59  E-value=5.4e-13  Score=146.41  Aligned_cols=135  Identities=13%  Similarity=0.051  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEe------------------------ccCchHHHH-HHHHHHcCCEEEEEeccCCccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYD------------------------YESEAVEAM-IRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~------------------------~es~sV~~~-~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      ..+++.+++|+++.|+.. .+.+.                        .++.+...+ ...+++.|+++++++++     
T Consensus        64 p~~~~le~~lA~l~g~~~-av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~-----  137 (433)
T PRK08134         64 PTVAVLEERVAALEGGVG-AIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG-----  137 (433)
T ss_pred             hHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-----
Confidence            446678888999988754 23221                        122222111 22345678888877753     


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                       +.++|+++|.+      +|+||.+.+.+|.+|.+.|++.| ++||++|+.+++|++|..|+  ....+ .+++|++++|
T Consensus       138 -d~~~l~~~i~~------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~--~~~pl-~~GaD~vv~S  207 (433)
T PRK08134        138 -DIDGWRAAIRP------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPY--LLRPF-EHGADLVYHS  207 (433)
T ss_pred             -CHHHHHHhcCC------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hcCCCEEEec
Confidence             67889988863      69999999999999999999965 58999999999999999998  44444 6799999999


Q ss_pred             ccccCCCCCCc--eEEEEEeC
Q 007454          304 FYQIFGENPSG--FGCLFVKK  322 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk  322 (603)
                      +|||+|  |.|  +|.+++..
T Consensus       208 ~tK~l~--g~g~~~gG~v~~~  226 (433)
T PRK08134        208 ATKFLG--GHGTAIGGVLVDG  226 (433)
T ss_pred             cccccC--CCCCceEEEEEec
Confidence            999999  556  78888753

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=99.57  E-value=1.3e-12  Score=132.28  Aligned_cols=256  Identities=16%  Similarity=0.189  Sum_probs=180.7

Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHH-HhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIA-QENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a-~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                      +..+++-..|..+   .....||.|+.+..-||.-+++..|..| |..|++|=.|-|.++|-  .||-|..|++||..-.
T Consensus       199 lRteDILd~IEkn---gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgN--VpL~LHdWgVDFACWC  273 (465)
T KOG3846|consen  199 LRTEDILDTIEKN---GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGN--VPLQLHDWGVDFACWC  273 (465)
T ss_pred             hhHHHHHHHHHhc---CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcC--CceEEeecCCceEEEe
Confidence            4566777777532   3467999999999999999999988776 55899999999999997  7999999999999999


Q ss_pred             ccccCCCCCCceEEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          304 FYQIFGENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       304 ~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      .||.....|.|+|.|+|.........|...|  |. .  +.. . +.++.    .++...+ .-+  |+...|++...++
T Consensus       274 SYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh-~--~s~-R-F~Mdn----vl~lipG-a~G--fRiSNPpi~~v~a  341 (465)
T KOG3846|consen  274 SYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGH-D--PSK-R-FQMDN----VLELIPG-ALG--FRISNPPIIDVVA  341 (465)
T ss_pred             eecccccCCCccceeeeehhhhcchhhHHhhhccC-C--cch-h-hhhcc----ccccCcc-ccc--cccCCCcHhHHHH
Confidence            9997532388999999987766555666555  32 0  110 0 10110    1221111 112  5666666666655


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      |.                                        ..|+..++..+++.++|...|+.||..-|+.++..++.
T Consensus       342 l~----------------------------------------~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~  381 (465)
T KOG3846|consen  342 LR----------------------------------------SSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHP  381 (465)
T ss_pred             HH----------------------------------------hhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCch
Confidence            54                                        68888888889999999999999998888766533322


Q ss_pred             ---CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          462 ---GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       462 ---g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                         ..+.+.|..|....+||--+++.+....     +.+.|.|- ++|+.      |.                      
T Consensus       382 ~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~-----~~vfqeL~-krGv~------~D----------------------  427 (465)
T KOG3846|consen  382 LRTEKLFFTIITPTSTDERGCQLSLYFSSPT-----PKVFQELH-KRGVI------GD----------------------  427 (465)
T ss_pred             hhhcceeEEEeCCcccccccceEEEEeCCCc-----hHHHHHHH-HcCee------cc----------------------
Confidence               3467889999876788888877775532     33445553 33332      21                      


Q ss_pred             ccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          539 KSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  .+...+||+.. ..||||.|||+++.+|.+.+|.
T Consensus       428 ------------kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~  461 (465)
T KOG3846|consen  428 ------------KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDK  461 (465)
T ss_pred             ------------ccCCCceEeecchhhccHHHHHHHHHHHHHHHHH
Confidence                        12235788775 6799999999999999999876

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.57  E-value=4.4e-13  Score=145.48  Aligned_cols=275  Identities=14%  Similarity=0.100  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHH-----------------------HHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTS-----------------------EKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a-----------------------~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.++++++++|. ++.++|...+.+....+..+                       +..|+++...+      ..+
T Consensus        90 ~~~~~Le~~la~~~g~-~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~------~~d  162 (402)
T TIGR01821        90 IPHVELEAELADLHGK-ESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFR------HND  162 (402)
T ss_pred             HHHHHHHHHHHHHhCC-CeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEEC------CCC
Confidence            3456888999999995 44555544333322222222                       22333333221      125


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~  297 (603)
                      .++|++++...  ..+++++|++...+|.+|.+.|++.+ ++|+++|+++++|.+|..|.- .+        .++. .++
T Consensus       163 ~~~l~~~l~~~--~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~-g~~g~g~~~~~~~~-~~~  238 (402)
T TIGR01821       163 VAHLEKLLQSV--DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLY-GPRGGGIAERDGLM-HRI  238 (402)
T ss_pred             HHHHHHHHHhc--cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccccccc-CCCCCccchhccCC-CCC
Confidence            67888888631  11257999999999999999999866 589999999999999874420 11        1111 247


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |+++.++-|.||.  .| |+++.++++++.+.... .+           +                 .   + .++.+..
T Consensus       239 div~~t~sKa~g~--~G-G~i~~~~~~~~~l~~~~-~~-----------~-----------------~---~-t~~~~~~  282 (402)
T TIGR01821       239 DIIEGTLAKAFGV--VG-GYIAASRKLIDAIRSYA-PG-----------F-----------------I---F-TTSLPPA  282 (402)
T ss_pred             eEEEEechhhhcc--CC-ceeecCHHHHHHHHHhC-cC-----------c-----------------e---e-cCcCCHH
Confidence            9999999999993  34 55555555443332100 00           0                 0   1 1222222


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .+++..                                        ++|+.+.+.  +.+.++.+.++++|.+.|.++  
T Consensus       283 ~~aaa~----------------------------------------aaL~~~~~~--~~~~~~~~~~~~~l~~~L~~~--  318 (402)
T TIGR01821       283 IAAGAT----------------------------------------ASIRHLKES--QDLRRAHQENVKRLKNLLEAL--  318 (402)
T ss_pred             HHHHHH----------------------------------------HHHHHhhcC--HHHHHHHHHHHHHHHHHHHHc--
Confidence            222221                                        577776653  556667778999999999875  


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                          |.+   ++++     .++++.+.+.+..   ...++.++|.+++||.++.....   .                  
T Consensus       319 ----g~~---~~~~-----~~~i~~i~~~~~~---~a~~~~~~L~~~~Gi~v~~~~~p---~------------------  362 (402)
T TIGR01821       319 ----GIP---VIPN-----PSHIVPVIIGDAA---LCKKVSDLLLNKHGIYVQPINYP---T------------------  362 (402)
T ss_pred             ----CCC---cCCC-----CCCEEEEEeCCHH---HHHHHHHHHHhcCCEEEEeECCC---C------------------
Confidence                222   2222     4678888764311   12234556667789999863210   0                  


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  ...+...||+|++.++|.+||+++++.|++++++
T Consensus       363 ------------~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~  396 (402)
T TIGR01821       363 ------------VPRGTERLRITPTPAHTDKMIDDLVEALLLVWDR  396 (402)
T ss_pred             ------------CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence                        0112258999999999999999999999998764

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.57  E-value=4.2e-13  Score=144.62  Aligned_cols=319  Identities=13%  Similarity=0.082  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      .++.|++|++++|++ ..+++...+.                      ...+....++..|++++.++++..++.++.++
T Consensus        31 ~~~le~~la~~~g~~-~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~  109 (380)
T TIGR03588        31 VPAFEEALAEYVGAK-YAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNIDEDA  109 (380)
T ss_pred             HHHHHHHHHHHHCCC-eEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcCHHH
Confidence            457788888888874 3343321111                      12223445567899999999863467789999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC----cEEEEcc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP----DFLICSF  304 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~----Dflv~S~  304 (603)
                      |++.|...  ..++|+++.+.   |.+|...|++.| ++|+++|++|++|++|..|.   .++...++.    |+.++||
T Consensus       110 l~~~i~~~--~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~---~~~~~~~g~~~~~d~~~~S~  181 (380)
T TIGR03588       110 LEKKLAAA--KGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGA---EYGGKPVGNCRYADATVFSF  181 (380)
T ss_pred             HHHHhhcc--cCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccC---ccCCEeCCCccccceEEEec
Confidence            99999731  11257777754   468999999855 58999999999999999986   255555666    9999999


Q ss_pred             c--ccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          305 Y--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       305 h--K~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      |  |+++. | .-|+++.+ ++..+.+++...+|.....    ..+..       ...   .+..  ++.++.      |
T Consensus       182 ~~~K~~~~-~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~----~~~~~-------~~~---~~~~--~~~~~~------g  237 (380)
T TIGR03588       182 HPVKIITT-A-EGGAVTTNDEELAERMRLLRSHGITKDP----LLFEK-------QDE---GPWY--YEQQEL------G  237 (380)
T ss_pred             CCCCcccc-c-CceEEEECCHHHHHHHHHHHHCCCCCCc----ccccc-------ccc---Ccce--eeeecc------c
Confidence            9  88874 3 23444443 3343444432222321100    00000       000   0011  122221      1


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +..      .-.++++.                         .++..++.  ++.+.++-+.+.+++.+.|..++     
T Consensus       238 ~n~------~m~~l~aa-------------------------~g~~qL~~--l~~~~~~r~~~~~~~~~~L~~~~-----  279 (380)
T TIGR03588       238 FNY------RMTDIQAA-------------------------LGLSQLKK--LDRFVAKRREIAARYDRLLKDLP-----  279 (380)
T ss_pred             ccc------CccHHHHH-------------------------HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCC-----
Confidence            110      00111111                         23333433  68888888999999999998763     


Q ss_pred             CCceEEEeCCCCCCCCC-CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          462 GNALVKIYGPKIRFDRG-PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg-~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                         .++++.+....... ....+.+...+|  +..+.+.+.+.++||.++..+.+-.  ..+.       .....  .. 
T Consensus       280 ---~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~r~~l~~~L~~~gI~~~~~~~~~~--~~~~-------~~~~~--~~-  342 (380)
T TIGR03588       280 ---YFTPLTIPLGSKSAWHLYPILLDQEFG--CTRKEVFEALRAAGIGVQVHYIPVH--LQPY-------YRQGF--GD-  342 (380)
T ss_pred             ---CccCCCCCCCCEeEEEEEEEEECCcCC--CCHHHHHHHHHHCCCCcccCCcccc--cChh-------hhccC--Cc-
Confidence               25555442111111 122222322122  3456666666788999987653311  1111       00000  00 


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      .....   ........|++.++...|.+||+++++.|+++|
T Consensus       343 ~~~p~---a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       343 GDLPS---AENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CCCcH---HHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence            00000   001122589999999999999999999999875

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.56  E-value=8.3e-13  Score=154.19  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=95.7

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc-HHHH-HHHHhCCcEEEEecccc
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-YLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p-l~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      +++..|.+|+.++.+ ++|.+|.++|+++|...   +.++.+|++++.|| +|.+.| ++.| ++||++|..|++|++|.
T Consensus       594 sa~~~G~~Vv~V~~d-~~G~iDle~L~~~i~~~---~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~  668 (939)
T TIGR00461       594 SAAMAGMQVVPVNCD-QDGNIDLVDLKNKAEQH---GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANM  668 (939)
T ss_pred             HHHHCCCEEEEeccC-CCCCcCHHHHHHHHhhc---CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecCh
Confidence            356679999999987 68999999999999731   23799999999999 798877 9855 68999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCC----CCCceEEEEEeCCCCcCcCCCCCCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGE----NPSGFGCLFVKKSTVPILVDNTSSG  335 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~----~P~G~G~L~vkk~~~~~L~p~~~gG  335 (603)
                      .+.- ...+..++++||+++|.||+||.    .|.|+|++.+|+.    |.|...|+
T Consensus       669 ~al~-~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~----L~~~lPg~  720 (939)
T TIGR00461       669 NAQV-GLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH----LIPFLPKH  720 (939)
T ss_pred             hhCC-CCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh----chhhcCCC
Confidence            8652 23445679999999999997652    0346699999976    44444453

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.56  E-value=4.6e-13  Score=135.92  Aligned_cols=268  Identities=18%  Similarity=0.141  Sum_probs=191.2

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HHH-HHHhCCcEEEEec
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMR-IAQENDWHILIDA  279 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i~-~a~e~g~~vlvDA  279 (603)
                      ++..+++-|++|..++.+| ...+..+++++.|...     +.++|.+.|...-||+.+|+. ... ++|+++++++||+
T Consensus       107 a~D~~~r~ga~V~~v~~~~-G~~~~le~i~~~lsqh-----~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~  180 (385)
T KOG2862|consen  107 AADCARRYGAEVDVVEADI-GQAVPLEEITEKLSQH-----KPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDT  180 (385)
T ss_pred             HHHHHHhhCceeeEEecCc-ccCccHHHHHHHHHhc-----CCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEec
Confidence            3577889999999999997 6778999999999863     689999999999999999965 443 7899999999999


Q ss_pred             cccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceecc---ccccccccccccCCCC
Q 007454          280 CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLL---PAKKQLWLTDEFSSCE  356 (603)
Q Consensus       280 aq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~---~~~~~~~~~~~~~~~~  356 (603)
                      ++++|-  .++-+++|++|+.-....|..|. |.|++.+-..+.++..++....+ -+.+.   .....+|.-      +
T Consensus       181 VaSlgg--t~F~mDewgVDvaytgSQKaL~a-P~GLsiisfS~ka~~~~~~rK~~-~~~~yFd~~~~~~~wgc------~  250 (385)
T KOG2862|consen  181 VASLGG--TEFEMDEWGVDVAYTGSQKALGA-PAGLSIISFSDKALEAIRDRKTK-PVSFYFDILRLGNFWGC------D  250 (385)
T ss_pred             hhhcCC--ccceehhhcccEEEecchhhcCC-CCCcceeecCHHHHHHHhhccCC-ceEEEEeHHhhcchhcc------C
Confidence            877766  58999999999999999999998 89999987777776656543221 11110   011122311      1


Q ss_pred             CCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHH
Q 007454          357 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM  436 (603)
Q Consensus       357 ~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~  436 (603)
                      -|     ++.   -.-|+++..+.+|.                                        +||+++.+-|+++
T Consensus       251 ~e-----~~~---yhhT~pv~lly~Lr----------------------------------------~AL~~I~eeGL~~  282 (385)
T KOG2862|consen  251 GE-----PRA---YHHTPPVQLLYSLR----------------------------------------AALALIAEEGLEN  282 (385)
T ss_pred             Cc-----ccc---cccCCcHHHHHHHH----------------------------------------HHHHHHHHHHHHH
Confidence            12     121   24577777777765                                        6999988889999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE-EEEEccCCCCccCHHH-HHHHHhcCCcEEeeCcc
Q 007454          437 ISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL-AFNVFDWKREKIEPVL-VQKLADRENISLSYGSL  514 (603)
Q Consensus       437 i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv-sFnv~~~~g~~v~~~~-V~~Lad~~gI~lr~G~~  514 (603)
                      +-+|-+++.+||..+|.++      |..+.   .-+. +.|.|+| +..++-.    +++.+ +.++-+++++.++.|.-
T Consensus       283 ~~~rH~e~s~~l~~~l~~~------GLq~f---v~~e-~~rlptvttv~vp~g----vDw~dVv~~~~~~~~vei~gglg  348 (385)
T KOG2862|consen  283 SWRRHREMSKWLKLSLEAL------GLQLF---VVDE-ELRLPTVTTVKVPYG----VDWKDVVAYAMSHYVVEIGGGLG  348 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHh------Cccce---ecCh-hhccCcceeeecCCC----CCHHHHHHHHHHhcCEEeccccC
Confidence            9999999999999999986      33222   2221 3454443 3444321    34444 45555666888765511


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe-cCCCCCHHHHHHHHHHHHHHHhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS-LGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S-lg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                          ....-+.||. +|...|.|-|++.++.|+.-+..
T Consensus       349 ------------------------------------~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  349 ------------------------------------PTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             ------------------------------------CCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence                                                1122477886 57888999999999988876643

>PLN02822 serine palmitoyltransferase

Probab=99.56  E-value=2.4e-12  Score=143.19  Aligned_cols=287  Identities=13%  Similarity=0.164  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHc---------------------CCEEEEEeccCCccccCH
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKR---------------------GARVMSAEFSWPRLRINS  227 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~---------------------Ga~V~~~~~~~~~g~i~~  227 (603)
                      .+...+.+++|+++++.+ +.++|.....++..++...-++                     |+++.+++.+      +.
T Consensus       153 ~~~~~~Lee~La~~~~~~-~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n------d~  225 (481)
T PLN02822        153 IDVHLDCETKIAKFLGTP-DSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHN------DM  225 (481)
T ss_pred             HHHHHHHHHHHHHHhCCC-CEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCC------CH
Confidence            356778999999999964 5677754322222222222233                     4444444322      45


Q ss_pred             HHHHHHHhhcCC---CCCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---C----CCCCCCCCC
Q 007454          228 EKLRKMVVSKGK---KKKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---D----MDSFGLSLV  295 (603)
Q Consensus       228 ~~L~~~l~~~~~---~~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~----m~~ldls~~  295 (603)
                      ++|+..+...++   +++++ +++++-..++.+|.+.|++.+ ++|+++|+++++|-++..+.   .    ..-+++...
T Consensus       226 ~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~  305 (481)
T PLN02822        226 ESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIE  305 (481)
T ss_pred             HHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCC
Confidence            566665542111   11234 788888888889999999865 58999999999999876332   0    001334334


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      .+|+++.|+.|-||  .+| |+++.++++++.+..... +.+                               +-...++
T Consensus       306 ~~dii~~s~sKalg--~~G-G~i~g~~~ii~~~~~~~~-~~~-------------------------------fsa~lPp  350 (481)
T PLN02822        306 KIDIITAAMGHALA--TEG-GFCTGSARVVDHQRLSSS-GYV-------------------------------FSASLPP  350 (481)
T ss_pred             CCeEEEecchhhhh--hCC-eEEEcCHHHHHHHHhcCC-cee-------------------------------eccccCH
Confidence            68999999999999  678 888887776654432100 100                               1111222


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      +...+++                                         ++|+.++.  ...+.++++.+++++.++|.++
T Consensus       351 ~~~~Aa~-----------------------------------------~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~  387 (481)
T PLN02822        351 YLASAAI-----------------------------------------TAIDVLED--NPSVLAKLKENIALLHKGLSDI  387 (481)
T ss_pred             HHHHHHH-----------------------------------------HHHHHHHh--CHHHHHHHHHHHHHHHHHHHhc
Confidence            2222221                                         36666543  2567788999999999999875


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC-----ccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE-----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~-----~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                      .     |   +.+.++    ..++++.+.+.+..+.     ....+.+.+|++++||.+..+..-  ...          
T Consensus       388 ~-----g---~~~~~~----~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~--~~~----------  443 (481)
T PLN02822        388 P-----G---LSIGSN----TLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRS--TLD----------  443 (481)
T ss_pred             C-----C---cccCCC----CCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCC--CcC----------
Confidence            3     2   344333    3578999998653221     111345777777889998765221  000          


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                         .......+|++++...|.+||+++++.|++++.+
T Consensus       444 -------------------~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~  477 (481)
T PLN02822        444 -------------------KCRLPVGIRLFVSAGHTESDILKASESLKRVAAS  477 (481)
T ss_pred             -------------------CCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                               0111247999999999999999999999998765

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.56  E-value=1.5e-12  Score=141.56  Aligned_cols=275  Identities=13%  Similarity=0.082  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHH-H----------------------HHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRT-S----------------------EKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~-a----------------------~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ...++..+++++++|. +..++|.....++..++.. +                      +..|+++..++.      .+
T Consensus        90 ~~~~~le~~la~~~g~-~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~------~d  162 (406)
T PRK13393         90 HYHVLLEAELADLHGK-EAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH------ND  162 (406)
T ss_pred             HHHHHHHHHHHHHhCC-CcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC------CC
Confidence            3567888999999996 4556665443333333332 1                      223333333221      25


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~  297 (603)
                      .++|++.+...  ..+++++|++.+++|++|.+.|++.+ ++|+++|+.+++|.+|..|. +.+        .++. .++
T Consensus       163 ~~~l~~~l~~~--~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~-~g~~G~g~~~~~~~~-~~~  238 (406)
T PRK13393        163 PADLERKLSDL--DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGL-YGPRGGGIAEREGLA-DRL  238 (406)
T ss_pred             HHHHHHHHHhc--cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCchhhhcCCC-CCC
Confidence            77888877531  11357899999999999999999866 58999999999999986332 011        1121 236


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |.++.++=|.||.  .| |.+..++++.+.+....                               +.+  .-.++.+..
T Consensus       239 ~i~~~tlsKa~g~--~G-G~~~~~~~~~~~l~~~~-------------------------------~~~--~~t~~~~p~  282 (406)
T PRK13393        239 TIIEGTLAKAFGV--MG-GYITGSAALCDFIRSFA-------------------------------SGF--IFTTSLPPA  282 (406)
T ss_pred             eEEEEeCchhhcc--cC-ceeeCCHHHHHHHHHhC-------------------------------cCc--eecCccCHH
Confidence            8888899999993  34 55554444433222100                               000  012233333


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..++..                                        ++|+++...+..  ..+.+.+.++|.+.|.++  
T Consensus       283 ~~aa~~----------------------------------------aaL~~~~~~~~~--~~~~~~~~~~l~~~L~~~--  318 (406)
T PRK13393        283 VAAGAL----------------------------------------ASVRHLKASSAE--RERHQDRVARLRARLDKA--  318 (406)
T ss_pred             HHHHHH----------------------------------------HHHHHHhhCHHH--HHHHHHHHHHHHHHHHHc--
Confidence            333322                                        577776654322  356678888999999875  


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                          |.+++    +    ..++++.+.+.+.   .....+.++|.+++||.++.+..  +.                   
T Consensus       319 ----g~~~~----~----~~~~i~~v~~~~~---~~~~~l~~~L~~~~Gi~v~~~~~--p~-------------------  362 (406)
T PRK13393        319 ----GIPHL----P----NPSHIVPVMVGDP---VLCKQISDELLDRYGIYVQPINY--PT-------------------  362 (406)
T ss_pred             ----CCCcC----C----CCCCeEEEEeCCH---HHHHHHHHHHHHhCCEEEEeECC--CC-------------------
Confidence                22222    1    2567887766431   11123445566668999986411  00                   


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  ...+.+.||+|++.++|.+||+++++.|++++++
T Consensus       363 ------------~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~  396 (406)
T PRK13393        363 ------------VPRGTERLRITPSPLHTDADIEHLVQALSEIWAR  396 (406)
T ss_pred             ------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence                        0112257999999999999999999999998765

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.56  E-value=1.2e-12  Score=139.55  Aligned_cols=203  Identities=13%  Similarity=0.143  Sum_probs=128.1

Q ss_pred             HhCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc
Q 007454           82 KAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT  160 (603)
Q Consensus        82 ~~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s  160 (603)
                      ...+.|.....+..+|+ +|+.- ..+.+.|+-+-.. ..++.+++++.+.....                   ...+..
T Consensus        11 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~y~~~   69 (361)
T PRK00950         11 KEIKPYVPGKSKEEIAR-EYGID-PESIIKLGSNENPLGPSPKAVEAIEKELSKI-------------------HRYPEP   69 (361)
T ss_pred             hcCCCCCCCCCHHHHHH-HhCCC-ccceEEccCCCCCCCCCHHHHHHHHHHHHhh-------------------cCCCCC
Confidence            33455654445666766 47643 2367888655332 24566677765432100                   011111


Q ss_pred             cccccchHHHHHHHHHHHHHHHcCCCCCcEEE-eccCc-hHH---------------------HHHHHHHHcCCEEEEEe
Q 007454          161 QLLHGGQESGLESAMKKRIMDFLNISENDYVY-DYESE-AVE---------------------AMIRTSEKRGARVMSAE  217 (603)
Q Consensus       161 ~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf-~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~  217 (603)
                      .          ..+.|+.|++++|++++++++ +..+. ++.                     .....++..|+++..++
T Consensus        70 ~----------~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~  139 (361)
T PRK00950         70 D----------APELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAK  139 (361)
T ss_pred             C----------HHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEee
Confidence            1          257999999999999998877 33221 111                     12233556788888888


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC--CCCCCCCCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP--KDMDSFGLSL  294 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~--~~m~~ldls~  294 (603)
                      .+ .++.++.++|++.+..      +++++++...+|.||.++|++.+ ++++++|+++++|.++..-  .++.++ +..
T Consensus       140 ~~-~~~~~~~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~-~~~  211 (361)
T PRK00950        140 RE-EDFSLDVDSVLNAITE------KTKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFAEYDYTPL-ALE  211 (361)
T ss_pred             cC-CCCCcCHHHHHHHhcc------CCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhCccchHHH-HHh
Confidence            65 3557899999988853      57888888999999999999855 5889999999999987422  111111 112


Q ss_pred             CCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          295 VRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      ...-+++.|+-|.||.  .|  +|.++..++.+
T Consensus       212 ~~~vi~~~S~SK~~g~--~GlRiG~~~~~~~~~  242 (361)
T PRK00950        212 YDNLIIGRTFSKVFGL--AGLRIGYGFVPEWLI  242 (361)
T ss_pred             cCCEEEEEeehHhhcC--chhhcchhcCCHHHH
Confidence            2223666799999994  47  67776655443

>PRK07908 hypothetical protein; Provisional

Probab=99.56  E-value=3.8e-13  Score=143.20  Aligned_cols=262  Identities=15%  Similarity=0.166  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc-h------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE-A------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK  232 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~-s------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~  232 (603)
                      ..+.|+.|++++|+++++++++..+. +                  -......++..|.++..++.+ .+..++.+.+  
T Consensus        60 ~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~l~~~~viv~~P~y~~~~~~~~~~G~~i~~v~~~-~~~~~d~~~l--  136 (349)
T PRK07908         60 ERRARAAVAARHGRTPDEVLLLAGAAEGFALLARLRPRRAAVVHPSFTEPEAALRAAGIPVHRVVLD-PPFRLDPAAV--  136 (349)
T ss_pred             hHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHhcCCCeEEEeCCCChHHHHHHHHcCCEEEeeccC-cccCcChhHh--
Confidence            35799999999999999998764321 1                  122234456678888888776 2345666533  


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecccc--CCCCCCCCCCCCCC-CcEEEE-ccccc
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACAL--GPKDMDSFGLSLVR-PDFLIC-SFYQI  307 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~--~~~~m~~ldls~~~-~Dflv~-S~hK~  307 (603)
                        .      ++++++.++..+|.||.++|.+.+. +++ ++.++++|.+..  .+.  .+..+.... .+++++ |++|.
T Consensus       137 --~------~~~~~i~l~np~NPTG~~~~~~~l~~l~~-~~~~iIvDe~y~~~~~~--~~~~l~~~~~~~~i~i~S~SK~  205 (349)
T PRK07908        137 --P------DDADLVVIGNPTNPTSVLHPAEQLLALRR-PGRILVVDEAFADAVPG--EPESLAGDDLPGVLVLRSLTKT  205 (349)
T ss_pred             --c------cCCCEEEEcCCCCCCCCCcCHHHHHHHHh-cCCEEEEECcchhhccC--CccccccccCCCEEEEeecccc
Confidence              2      2578999999999999999998664 665 577888898752  222  123332222 355555 99999


Q ss_pred             CCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454          308 FGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR  385 (603)
Q Consensus       308 fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~  385 (603)
                      ||  +.|  +|.++++++.++.+.+....            |                      ..++.+...+.++-  
T Consensus       206 ~~--l~GlRiG~~~~~~~~~~~~~~~~~~------------~----------------------~~~~~~~~a~~~~~--  247 (349)
T PRK07908        206 WS--LAGLRVGYALGAPDVLARLTRGRAH------------W----------------------PVGTLQLEAIAACC--  247 (349)
T ss_pred             cC--CccceeeeeecCHHHHHHHHhcCCC------------C----------------------CccHHHHHHHHHHh--
Confidence            99  446  59999887765544421100            0                      01111111100000  


Q ss_pred             hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454          386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL  465 (603)
Q Consensus       386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl  465 (603)
                                   .                       -.+.++     +.++.++.+..++++.+.|.++      |   
T Consensus       248 -------------~-----------------------~~~~~~-----~~~~~~~~~~~r~~l~~~L~~~------~---  277 (349)
T PRK07908        248 -------------A-----------------------PRAVAE-----AAADAARLAADRAEMVAGLRAV------G---  277 (349)
T ss_pred             -------------c-----------------------ccchHH-----HHHHHHHHHHHHHHHHHHHHhC------C---
Confidence                         0                       011122     3456777888889999999874      1   


Q ss_pred             EEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccc
Q 007454          466 VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNN  545 (603)
Q Consensus       466 v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  545 (603)
                      ++++.|.    .+..+.+.+++       ...+.+++.++||.++.|..+.                             
T Consensus       278 ~~~~~p~----~g~~~~~~~~~-------~~~~~~~l~~~gI~v~~g~~f~-----------------------------  317 (349)
T PRK07908        278 ARVVDPA----AAPFVLVRVPD-------AELLRKRLRERGIAVRRGDTFP-----------------------------  317 (349)
T ss_pred             cEeccCC----CceEEEEECCc-------HHHHHHHHHhCCEEEEECCCCC-----------------------------
Confidence            5666653    36777777764       2456677788999999774431                             


Q ss_pred             cccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          546 RKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       546 ~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                           ....+.||+|++   +.+|+++|+++|++++.+
T Consensus       318 -----~~~~~~vRis~~---~~~~~~~l~~al~~~~~~  347 (349)
T PRK07908        318 -----GLDPDYLRLAVR---PRAEVPVLVQALAEILKA  347 (349)
T ss_pred             -----CCCCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence                 011258999994   899999999999998765

>PLN02590 probable tyrosine decarboxylase

Probab=99.55  E-value=9.2e-12  Score=139.49  Aligned_cols=124  Identities=13%  Similarity=0.062  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHcCC---EEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCc
Q 007454          199 VEAMIRTSEKRGA---RVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDW  273 (603)
Q Consensus       199 V~~~~~~a~~~Ga---~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~  273 (603)
                      +..+.++++-.|.   .|+.+|.+. .+++++.++|+++|...++....+-+|+-++-+-.||.+=|++.|+ +|+++|+
T Consensus       239 H~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~  318 (539)
T PLN02590        239 HSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGI  318 (539)
T ss_pred             hHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCC
Confidence            3344555555565   588888873 2578999999999976433334567888899999999999999775 8999999


Q ss_pred             EEEEeccccCCCCC----CCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          274 HILIDACALGPKDM----DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       274 ~vlvDAaq~~~~~m----~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ++|||||-.+.--+    ..+.-..-++|-+++++|||++- |.+.|+|++|+.
T Consensus       319 WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~-p~~cg~llvr~~  371 (539)
T PLN02590        319 WLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFA-NQTCSPLWVKDR  371 (539)
T ss_pred             eEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCc-CcCEEEEEecCH
Confidence            99999863332100    01111224589999999999987 999999999975

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.54  E-value=1.3e-12  Score=142.24  Aligned_cols=283  Identities=15%  Similarity=0.125  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCchHHHH-----------------------HHHHHHcCCEEEEEeccCCccccCHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESEAVEAM-----------------------IRTSEKRGARVMSAEFSWPRLRINSE  228 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~-----------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~  228 (603)
                      ..+.+++|++++|. ++.++|...+.+...+                       ...++..|+++..++.      -+.+
T Consensus        93 ~~~Le~~la~~~g~-~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~------~d~~  165 (410)
T PRK13392         93 HVLLERELADLHGK-ESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH------NDLA  165 (410)
T ss_pred             HHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC------CCHH
Confidence            45788999999995 5667665433222222                       2223344555544432      1455


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCCcE
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDF  299 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~Df  299 (603)
                      ++++.+...  ..+++++|++...+|.||.+.|++.+ ++|+++|+++++|.++..+. +.+        .++. -++|+
T Consensus       166 ~l~~~l~~~--~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~-~g~~g~g~~~~~~~~-~~~di  241 (410)
T PRK13392        166 DLEEQLASV--DPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGL-YGARGGGIAERDGLM-DRIDM  241 (410)
T ss_pred             HHHHHHHhc--cCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccC-cCCCCCchhhhccCC-CCCcE
Confidence            677766531  12468999999999999999999866 58999999999999987432 001        1111 25799


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      ++.|+.|.||. + | |++..+++.++.++... .+           |                  .  + ..+.+....
T Consensus       242 v~~tlsK~~g~-~-G-G~~~~~~~~~~~l~~~~-~~-----------~------------------~--~-s~~~~~~~~  285 (410)
T PRK13392        242 IQGTLAKAFGC-L-G-GYIAASADLIDFVRSFA-PG-----------F------------------I--F-TTALPPAVA  285 (410)
T ss_pred             EEEEChHhhhc-c-c-chhhcCHHHHHHHHHhC-cc-----------h------------------h--c-cCcCCHHHH
Confidence            99999999995 3 5 66655555443222100 00           0                  0  0 111122222


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      ++..                                        ++|+.+...+  ...++.+..++++.+.|.++    
T Consensus       286 ~a~~----------------------------------------aaL~~~~~~~--~~~~~~~~~~~~l~~~L~~~----  319 (410)
T PRK13392        286 AGAT----------------------------------------AAIRHLKTSQ--TERDAHQDRVAALKAKLNAN----  319 (410)
T ss_pred             HHHH----------------------------------------HHHHHHhcCH--HHHHHHHHHHHHHHHHHHHc----
Confidence            2221                                        5777665543  34466777888999999875    


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                        |.   .++.     ..++++.+.+.+..   -..++.++|++++||.++.+..  +.                     
T Consensus       320 --g~---~~~~-----~~~~~~~i~~~~~~---~~~~~~~~L~~~~GI~v~~~~~--p~---------------------  363 (410)
T PRK13392        320 --GI---PVMP-----SPSHIVPVMVGDPT---LCKAISDRLMSEHGIYIQPINY--PT---------------------  363 (410)
T ss_pred             --CC---CCCC-----CCCCEEEEEeCCHH---HHHHHHHHHHHhCCEEEeeeCC--CC---------------------
Confidence              22   2222     24567666554310   1123455676788999985411  00                     


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhccccccccc
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYTA  595 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~~~~  595 (603)
                                ...+.+.+|+|++.++|.+|+++|++.|++++++--+  ..||-.|
T Consensus       364 ----------~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~~~--~~~~~~~  407 (410)
T PRK13392        364 ----------VPRGTERLRITPTPLHDDEDIDALVAALVAIWDRLEL--PRWREAA  407 (410)
T ss_pred             ----------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHcCC--ccchhhh
Confidence                      0112258999999999999999999999998765222  5666433

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.54  E-value=8.7e-13  Score=140.92  Aligned_cols=323  Identities=15%  Similarity=0.112  Sum_probs=207.2

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC-Cc
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE-ND  189 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~-~e  189 (603)
                      |+=.+|=+.+|++|++++.+.+......      +          ...-...+.+..-.++++++++.+.++|++++ .+
T Consensus         6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~------g----------~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~   69 (364)
T PRK12462          6 LNFSGGPGALPDTVLEQVRQAVVELPET------G----------LSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYG   69 (364)
T ss_pred             ceecCCCcCCCHHHHHHHHHHHhccccc------C----------ccccccccccHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence            3334666788999999876433211000      0          00111111123457899999999999999965 35


Q ss_pred             EEEeccC----------------c-h---------HHHHHHHHHHcCCEEEEEeccCC---ccccCHHHHHHHHhhcCCC
Q 007454          190 YVYDYES----------------E-A---------VEAMIRTSEKRGARVMSAEFSWP---RLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       190 ~vf~~es----------------~-s---------V~~~~~~a~~~Ga~V~~~~~~~~---~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++|..-+                . .         -..+.+.+++.| +|..+...|.   ...++.+++    ..    
T Consensus        70 Vlfl~GggT~~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~----~~----  140 (364)
T PRK12462         70 VVFLQGGSSLQFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL----DW----  140 (364)
T ss_pred             EEEEeccHHHHHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh----cc----
Confidence            5553211                0 0         022345566666 5655543221   112333333    11    


Q ss_pred             CCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      +++...|.+++..-.||+.+|    ...+.+++++++|+++.++.  .++|++++  |.+.++..|-+|  |.|++++++
T Consensus       141 ~~d~~~v~~t~NETstGv~~~----~~~~~~~~llvvD~sS~~~s--~pid~~~~--dvi~agsQKnlg--P~Gltvviv  210 (364)
T PRK12462        141 DARAPFRHYVSNETVEGLQFP----DAAGLPDSPLIADMSSDFMS--RPFDVEAY--GMVYAHAQKNLG--PAGVTVAII  210 (364)
T ss_pred             CCCCcEEEEccCCCCceEecC----cccccCCCeEEEEcCchhhC--CCCChHHc--cEEEeeccccCC--CCceEEEEE
Confidence            235688999999999999997    22233689999999887776  69999987  999999999999  779999999


Q ss_pred             eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhh
Q 007454          321 KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR  400 (603)
Q Consensus       321 kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~  400 (603)
                      |+++++..++.. ..+.+        |...      .+      ..  --.-||++..|+++.                 
T Consensus       211 s~~al~~~~~~~-p~~ld--------y~~~------~~------~~--s~~nTPpv~~iy~l~-----------------  250 (364)
T PRK12462        211 RRALLERVPDTL-PPMLD--------FRTH------VE------HR--SNYNTPPVFAIYVMA-----------------  250 (364)
T ss_pred             CHHHHhhccccC-Cchhh--------HHHH------Hh------cC--CCCCCchHHHHHHHH-----------------
Confidence            999876554321 11110        1000      00      00  012388888888877                 


Q ss_pred             hhhhhhhhhccCCCCCCCchhHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC-
Q 007454          401 AEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR-  477 (603)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i--Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r-  477 (603)
                                             .+++++.+.  |++.+.+|-+.+++.|++.|.++..        + .+++..+..| 
T Consensus       251 -----------------------~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~--------~-~~~~~~~~~RS  298 (364)
T PRK12462        251 -----------------------LVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNE--------V-IDCHAHRAARS  298 (364)
T ss_pred             -----------------------HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCC--------c-ccCCCChhhcC
Confidence                                   689988765  9999999999999999999998641        1 1122222334 


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      .=.|.|++.|..   +. ..+.+.+..+||.---                                      +.+..|.+
T Consensus       299 ~mnv~f~~~~~~---l~-~~f~~~a~~~gl~~lk--------------------------------------Ghr~vgg~  336 (364)
T PRK12462        299 TMNVAFRFRQPR---LD-TLFKEQSTEAGFCGLS--------------------------------------GHRSIGGI  336 (364)
T ss_pred             cceEEEEcCCHH---HH-HHHHHHHHHCCCcccc--------------------------------------CCcccCce
Confidence            457888887632   22 2344455666665221                                      22335679


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      |+|+=--.+.|+|++|++|+++|-.
T Consensus       337 Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        337 RASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999854

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.50  E-value=3.5e-13  Score=148.36  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=132.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .+.||++|.|.+++++.+++++.+++..        |            +|+......| .....++.+++.+++++|+.
T Consensus        80 tg~v~~tNlg~s~l~~~vieAv~~~~~~--------y------------~~l~~~l~~g-~~g~r~~~le~~lA~l~gae  138 (454)
T TIGR00474        80 TGVVLHTNLGRAPLAEEAIEAVTDAARG--------Y------------SNLEYDLETG-KRGSRYSHVEGLLCELTGAE  138 (454)
T ss_pred             CCcEEeccCCCCCCCHHHHHHHHHHHhc--------c------------cchhcccccc-ccchHHHHHHHHHHHHhCCC
Confidence            4579999999999999999998875432        1            2221111111 22355789999999999986


Q ss_pred             CCcEEEec-----------------------cCc---hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 ENDYVYDY-----------------------ESE---AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~~e~vf~~-----------------------es~---sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      . .++|..                       ++.   ....+....++.|++++.++.+   ...+.++++++|..    
T Consensus       139 ~-alvv~sg~aAi~l~l~~l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~---~~~~l~dle~aI~~----  210 (454)
T TIGR00474       139 D-ALVVNNNAAAVLLALNTLAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT---NRTHLKDYEDAITE----  210 (454)
T ss_pred             c-EEEECCHHHHHHHHHHHhCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC---CCCCHHHHHHhcCc----
Confidence            4 344421                       110   1111223456679888887642   34578899998863    


Q ss_pred             CCCeeEEEEeCccccc--c--ccccHHHH-HHHHhCCcEEEEeccc---------cCCCCCCC--CCCCCCCCcEEEEcc
Q 007454          241 KKQRGLFVFPLHSRMT--G--ARYPYLWM-RIAQENDWHILIDACA---------LGPKDMDS--FGLSLVRPDFLICSF  304 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~T--G--~~~pl~~i-~~a~e~g~~vlvDAaq---------~~~~~m~~--ldls~~~~Dflv~S~  304 (603)
                        +|+++.+.+.||.+  |  .+.|++.| ++||++|+.+++|+++         .+++  .|  .+..++++|++++|+
T Consensus       211 --~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~--~p~~~~~~~~GaDiv~fSg  286 (454)
T TIGR00474       211 --NTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPD--EPTVQEVIAAGVDLVTFSG  286 (454)
T ss_pred             --CCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCC--CcccccHhHcCCCEEEecC
Confidence              69999999999984  7  58899855 5899999999999862         1222  22  245568999999999


Q ss_pred             cccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          305 YQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       305 hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      |||+|+ | ..|++++|++.++.|+.
T Consensus       287 ~K~LgG-p-~~G~i~g~~~~i~~l~~  310 (454)
T TIGR00474       287 DKLLGG-P-QAGIIVGKKELIERLKK  310 (454)
T ss_pred             ccccCC-C-eEEEEEECHHHHHhhhh
Confidence            999986 7 47999999987766653

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02263 serine decarboxylase

Probab=99.49  E-value=4.9e-11  Score=130.94  Aligned_cols=204  Identities=12%  Similarity=0.116  Sum_probs=137.5

Q ss_pred             HHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHH
Q 007454           93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE  172 (603)
Q Consensus        93 vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~  172 (603)
                      ++++++.-.|..    ..+|-|-...-+.++.+..+..+..+.                   -++|.....|+..+.+++
T Consensus        79 l~~~~~~~~~~~----~~~~gYp~n~~~d~s~l~~~l~~~~nN-------------------~Gdp~~~s~~~~~s~~~E  135 (470)
T PLN02263         79 LARYRKTLVERT----KHHLGYPYNLDFDYGALGQLQHFSINN-------------------LGDPFIESNYGVHSRQFE  135 (470)
T ss_pred             HHHHHHHHHhcc----cceeCCCCcccCChhhHHHHHHhhccC-------------------CCCccccCCcchhHHHHH
Confidence            355554433433    347777555555566666655432211                   022222222333467788


Q ss_pred             HHHHHHHHHHcCCCCCcE--EEec------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          173 SAMKKRIMDFLNISENDY--VYDY------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~--vf~~------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      .++=+.+++++|.+++++  +++.                        ..+++..+.++++-.|.+++.+|.+ +++++|
T Consensus       136 ~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d-~~g~mD  214 (470)
T PLN02263        136 VGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL-VSGEID  214 (470)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-CCCcCc
Confidence            888888999999877543  1211                        1123334455566678899999988 689999


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCc-----EEEEeccccCC-----CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDW-----HILIDACALGP-----KDMDSFGLSLV  295 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~-----~vlvDAaq~~~-----~~m~~ldls~~  295 (603)
                      .++|++.|..++   .++-+|+.++-+-.+|++=|++.|+ +|+++|.     ++|||||=.+.     ....++|... 
T Consensus       215 ~~aL~~aI~~d~---~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~-  290 (470)
T PLN02263        215 CADFKAKLLANK---DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK-  290 (470)
T ss_pred             HHHHHHHHHhCC---CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCc-
Confidence            999999997532   2467888899999999999999775 7899986     99999973221     1112356654 


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      ++|-+++++|||++. |.|.|++++|+...
T Consensus       291 ~vDSIsvD~HK~l~~-P~~cgvll~R~~~~  319 (470)
T PLN02263        291 PIGSVSVSGHKFVGC-PMPCGVQITRMEHI  319 (470)
T ss_pred             CccEEEECCccccCC-CcCEEEEEEehhhH
Confidence            499999999999997 99999999997643

>PRK05968 hypothetical protein; Provisional

Probab=99.48  E-value=3.1e-12  Score=138.74  Aligned_cols=141  Identities=13%  Similarity=0.089  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHH-------------------------HHHHHHHHcCCEEEEEeccCCccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVE-------------------------AMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~-------------------------~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      ...++.++++++++|++ ..++|.....++.                         .+...++..|+++.+++..     
T Consensus        63 p~~~~le~~lA~l~g~~-~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----  136 (389)
T PRK05968         63 PTVRAFEEMLAKLEGAE-DARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR-----  136 (389)
T ss_pred             hhHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC-----
Confidence            34668888999999985 3454432211111                         1223344556666665432     


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                       +.++|++++.       +|+||.+...+|.++.+.|++.| ++|+++|+.|++|+++..+....++   .+++|++++|
T Consensus       137 -d~~~l~~~i~-------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p~---~~g~Divv~S  205 (389)
T PRK05968        137 -DEEAVAKALP-------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRPI---TLGVDLVIHS  205 (389)
T ss_pred             -CHHHHHHhcc-------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCch---hcCCcEEEee
Confidence             5677877762       47899999888999999999865 5899999999999998776411233   3578999999


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      ++|++++ |.+  .|+++.+++.++.+
T Consensus       206 ~tK~l~g-~~~~~gG~i~~~~~~~~~l  231 (389)
T PRK05968        206 ASKYLGG-HSDTVAGVVAGSKEHIARI  231 (389)
T ss_pred             ccccccC-CCCeEEEEEEECHHHHHHH
Confidence            9999886 655  57777666654433

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.47  E-value=4.5e-12  Score=135.59  Aligned_cols=264  Identities=14%  Similarity=0.131  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .+.|+.|++++|+++++++++..+. ++                     ......++..|+++..++.+  +..++.++|
T Consensus        70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~l  147 (367)
T PRK02731         70 FELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK--DYGHDLDAM  147 (367)
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc--CCCCCHHHH
Confidence            4799999999999988887654321 11                     11122345678888888763  567899999


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHh--CCcEEEEeccccCCC----CCCCCCCCCCCC-cEEEE
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQE--NDWHILIDACALGPK----DMDSFGLSLVRP-DFLIC  302 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e--~g~~vlvDAaq~~~~----~m~~ldls~~~~-Dflv~  302 (603)
                      ++.+..      ++++|.++..+|.||.++|.+.+. +++.  +|+++++|.+.....    ...++++-.... .+++.
T Consensus       148 ~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~  221 (367)
T PRK02731        148 LAAVTP------RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTR  221 (367)
T ss_pred             HHHhCC------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence            988853      578999999999999999998664 5654  489999999743211    001122111122 35566


Q ss_pred             cccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          303 SFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      |+-|.||  ..|  +|.++++++.++.+....            ..                      +.   .+..+..
T Consensus       222 S~SK~~g--~~G~RiG~l~~~~~~~~~l~~~~------------~~----------------------~~---~~~~~~~  262 (367)
T PRK02731        222 TFSKAYG--LAGLRVGYGIAPPEIIDALNRVR------------QP----------------------FN---VNSLALA  262 (367)
T ss_pred             eehHhhc--CcccceeeeeCCHHHHHHHHHcc------------CC----------------------CC---CCHHHHH
Confidence            8889998  336  699998876654443210            00                      00   0111111


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                                                                 .+++.++.. .++++.++.+.+.+++.+.|.++    
T Consensus       263 -------------------------------------------~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----  295 (367)
T PRK02731        263 -------------------------------------------AAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL----  295 (367)
T ss_pred             -------------------------------------------HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence                                                       122222211 24666777788888898888764    


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                        |   +.++ |    ..++.+.+.+++.    .+...+.+.+.++||.++.|...                        
T Consensus       296 --g---~~~~-~----~~g~~~~i~~~~~----~~~~~~~~~L~~~gI~v~~~~~~------------------------  337 (367)
T PRK02731        296 --G---LEYI-P----SVGNFILVDFDDG----KDAAEAYQALLKRGVIVRPVAGY------------------------  337 (367)
T ss_pred             --C---CccC-C----CCceEEEEECCCC----CCHHHHHHHHHHCCEEEEeCCCC------------------------
Confidence              2   3333 2    2477888887431    23334444445689999875221                        


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                + . .+.||+|++   +.+|+++|+++|++++++
T Consensus       338 ----------~-~-~~~iRis~~---~~~e~~~l~~aL~~~~~~  366 (367)
T PRK02731        338 ----------G-L-PNALRITIG---TEEENRRFLAALKEFLAA  366 (367)
T ss_pred             ----------C-C-CCeEEEecC---CHHHHHHHHHHHHHHHhc
Confidence                      0 1 258999986   789999999999998754

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.47  E-value=1.8e-12  Score=136.56  Aligned_cols=150  Identities=11%  Similarity=0.110  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec-cCchHHHHHH------------------------HHHHcCCEEEEEeccCCccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY-ESEAVEAMIR------------------------TSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV~~~~~------------------------~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      ...++.++.+++++|  ++++++.. .++++..++.                        .++..|+++..++.+  .+.
T Consensus        32 ~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~  107 (338)
T cd06502          32 PTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHTQPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGE--NGK  107 (338)
T ss_pred             HHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhcCCCCeEEEecCcceeeecCCcHHHHcCceEEeecCC--CCc
Confidence            346688899999999  44554432 1122111111                        122357777777764  356


Q ss_pred             cCHHHHHHHHhhcCCC-CCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEecccc------CCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKK-KKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACAL------GPKDMDSFGLS  293 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~-~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~------~~~~m~~ldls  293 (603)
                      ++.++|++++....++ .++++++.+...+|. |..+|..   .+ ++|+++|+++++|++..      .+.   +++.-
T Consensus       108 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~---~~~~~  183 (338)
T cd06502         108 LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGV---ALKTY  183 (338)
T ss_pred             CCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC---CHHHH
Confidence            8999999998642111 136899999999985 7665654   33 46889999999998642      222   22211


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      ..++|++++|+||+||. | |-++++.+++.++.++
T Consensus       184 ~~~~d~~~~s~sK~~~~-~-~g~~~~~~~~~~~~~~  217 (338)
T cd06502         184 KSGVDSVSFCLSKGGGA-P-VGAVVVGNRDFIARAR  217 (338)
T ss_pred             HhcCCEEEEeccccCCC-c-cceEEECCHHHHHHHH
Confidence            24789999999999995 5 4334455666554443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.47  E-value=1.7e-11  Score=132.64  Aligned_cols=192  Identities=12%  Similarity=0.065  Sum_probs=123.1

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      .+.++|+-+... ++++.+.+++.+++......               .+..+       .-..++.+.+++.+++++|+
T Consensus        27 ~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~---------------~Y~~~-------~G~~~lr~~~~~~l~~~~g~   84 (389)
T PRK05957         27 PGTISLGQGVVSYPPPPEAIEALNNFLANPENH---------------KYQAV-------QGIPPLLEAITQKLQQDNGI   84 (389)
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCC---------------CCCCC-------CCCHHHHHHHHHHHHHHhCC
Confidence            356888866655 46777888876543211000               00000       11235678889999999997


Q ss_pred             C---CCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          186 S---ENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       186 ~---~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      .   +++++++..+. ++..                     ....++..|++++.++.+ .+..++.++|++.+..    
T Consensus        85 ~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~----  159 (389)
T PRK05957         85 ELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD-DNYQLQPEAIEQAITP----  159 (389)
T ss_pred             CCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC-CCCCcCHHHHHHhcCc----
Confidence            4   56777654321 1111                     122345678888888876 4567999999998863    


Q ss_pred             CCCeeEEEEeCcccccccccc---HH-HHHHHHhCCcEEEEecccc----CCCCCCC-CCC-CCCCCcEEEEcccccCCC
Q 007454          241 KKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACAL----GPKDMDS-FGL-SLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~p---l~-~i~~a~e~g~~vlvDAaq~----~~~~m~~-ldl-s~~~~Dflv~S~hK~fG~  310 (603)
                        +++++++++.+|.||.++|   ++ ++++|+++|+++++|.+-.    .+..+.+ ..+ ....--+++.|+-|.|| 
T Consensus       160 --~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-  236 (389)
T PRK05957        160 --KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG-  236 (389)
T ss_pred             --CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc-
Confidence              5899999999999999999   54 3467899999999999721    1110011 111 11123477888999999 


Q ss_pred             CCCc--eEEEEEeCCCCcCcC
Q 007454          311 NPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       311 ~P~G--~G~L~vkk~~~~~L~  329 (603)
                       +.|  +|++++.+++++.+.
T Consensus       237 -~~GlRiG~~~~~~~~~~~~~  256 (389)
T PRK05957        237 -FASWRIGYMVIPIHLLEAIK  256 (389)
T ss_pred             -CccceeEEEecCHHHHHHHH
Confidence             558  999998776654443

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.46  E-value=1.4e-11  Score=132.29  Aligned_cols=246  Identities=14%  Similarity=0.127  Sum_probs=151.2

Q ss_pred             HHHHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEE
Q 007454          204 RTSEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILI  277 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlv  277 (603)
                      ..++..|+++..++.+..  +..++.++|++.+..      ++++++++..+|.||.++|.+.    +++|+++|+++++
T Consensus       123 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~  196 (382)
T PRK06108        123 AAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP------RTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVA  196 (382)
T ss_pred             HHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEE
Confidence            345667899998888642  235889999888753      5788999999999999998752    3467899999999


Q ss_pred             eccccCC-----CCCC-CCCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceecccccccccccc
Q 007454          278 DACALGP-----KDMD-SFGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTD  350 (603)
Q Consensus       278 DAaq~~~-----~~m~-~ldls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~  350 (603)
                      |.+....     .... .+++.. ....+++.|++|.||.+...+|++++++++++.+.....             +   
T Consensus       197 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~-------------~---  260 (382)
T PRK06108        197 DEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIE-------------Y---  260 (382)
T ss_pred             ehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHH-------------h---
Confidence            9863321     1000 123322 234588999999998322237999987766544432100             0   


Q ss_pred             ccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH
Q 007454          351 EFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD  430 (603)
Q Consensus       351 ~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~  430 (603)
                                        .-.+++.+...++.                                         .+++...
T Consensus       261 ------------------~~~~~~~~~q~a~~-----------------------------------------~~l~~~~  281 (382)
T PRK06108        261 ------------------NTSCVAQFVQRAAV-----------------------------------------AALDEGE  281 (382)
T ss_pred             ------------------cccCCChHHHHHHH-----------------------------------------HHHhCCh
Confidence                              00111111111111                                         1222110


Q ss_pred             hcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe
Q 007454          431 SLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS  510 (603)
Q Consensus       431 ~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr  510 (603)
                      . -++.+.++.+.++++|++.|.++.        .++++.|.    -+..+-+.+++..   -..+++.+|++++||.++
T Consensus       282 ~-~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~p~----~g~~~~~~l~~~~---~~~~~~~~ll~~~gV~v~  345 (382)
T PRK06108        282 D-FVAELVARLRRSRDHLVDALRALP--------GVEVAKPD----GAMYAFFRIPGVT---DSLALAKRLVDEAGLGLA  345 (382)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhCC--------CCcccCCC----eeEEEEEeCCCCC---CHHHHHHHHHHhCCEEEe
Confidence            0 135667778888899999997652        25555442    2334455555421   122455667788999998


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      .|..+..                                  .+.+.||+|++.  +.++++..++.|++++.
T Consensus       346 pg~~f~~----------------------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        346 PGTAFGP----------------------------------GGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             CchhhCC----------------------------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            7743311                                  113689999998  89999999999988764

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.46  E-value=2.1e-11  Score=130.12  Aligned_cols=302  Identities=13%  Similarity=0.113  Sum_probs=187.0

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      .+.++||.+... ++|+.+++++.+.+...                        ....|.. .  -..+.|+.|++++|+
T Consensus        26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~Y~~-~--~~~~lr~~ia~~~~~   78 (356)
T PRK04870         26 TGMVKLDAMENPYRLPAELRAELGERLAEV------------------------ALNRYPD-P--RAAALKAALRAAMGV   78 (356)
T ss_pred             CCceeCcCCCCCCCCCHHHHHHHHHHhhcc------------------------ccccCCC-C--CHHHHHHHHHHHhCc
Confidence            357889877766 46778888876543210                        0000110 0  124789999999998


Q ss_pred             CCC-cEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          186 SEN-DYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       186 ~~~-e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      +++ +++++..+                      .+-......++..|+++..++++ +++.++.++|++.+..     .
T Consensus        79 ~~~~~I~~t~G~~~~i~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~-~~~~~d~~~l~~~~~~-----~  152 (356)
T PRK04870         79 PAGADVLLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT-ADFTLDLPAMLAAIAE-----H  152 (356)
T ss_pred             CCCCcEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC-CCCCCCHHHHHHHhhc-----C
Confidence            764 67654322                      12222345567789999999987 4678999999998863     2


Q ss_pred             CeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccc--cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEE
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACA--LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGC  317 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~  317 (603)
                      +++++.++.-+|.||..+|.+.+. +++..+.++++|.+.  +......+ .+....--+++.|+-| ||  ..|  +|.
T Consensus       153 ~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~-~~~~~~~vi~~~S~SK-~~--~~GlRiG~  228 (356)
T PRK04870        153 RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLP-RLARFPNLLVMRTVSK-LG--LAGLRLGY  228 (356)
T ss_pred             CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHH-HHhhCCCEEEEecchh-hh--hHHHhhhh
Confidence            578898898999999999998664 555547789999863  22211001 1223333578999999 88  447  898


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      ++.+++.++.+.....                                     ..+.+..+..+..              
T Consensus       229 ~i~~~~~i~~~~~~~~-------------------------------------~~~~~~~~q~~a~--------------  257 (356)
T PRK04870        229 LAGHPAWIAELDKVRP-------------------------------------PYNVNVLTQATAL--------------  257 (356)
T ss_pred             hhCCHHHHHHHHHccC-------------------------------------CCcCCHHHHHHHH--------------
Confidence            8877655443331100                                     0011111111100              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                .+++...  -+++..++.+..++++.+.|.++.     |   +.++ |    ..
T Consensus       258 --------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~-----~---~~~~-~----~~  296 (356)
T PRK04870        258 --------------------------FALEHVD--VLDAQAAQLRAERTRLAAALAALP-----G---VTVF-P----SA  296 (356)
T ss_pred             --------------------------HHHhCHH--HHHHHHHHHHHHHHHHHHHHHhCC-----C---cEEC-C----CC
Confidence                                      2332211  145556667778888888888752     2   4443 2    23


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      +..+.+.+++       ...+.+++.++||.|+.|....                                  ....+.+
T Consensus       297 ~~~~~~~~~~-------~~~~~~~l~~~gI~v~~~~~f~----------------------------------~~~~~~i  335 (356)
T PRK04870        297 ANFILVRVPD-------AAAVFDGLKTRGVLVKNLSGMH----------------------------------PLLANCL  335 (356)
T ss_pred             CeEEEEECCC-------HHHHHHHHHHCCEEEEECCCCC----------------------------------CCCCCeE
Confidence            5667776652       2345566788999998763220                                  0112689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      |+|++   +.+|+++|+++|+++|
T Consensus       336 Ris~~---~~~~~~~l~~al~~~~  356 (356)
T PRK04870        336 RVTVG---TPEENAQFLAALKAAL  356 (356)
T ss_pred             EEeCC---CHHHHHHHHHHHHHhC
Confidence            99998   7999999999998764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.44  E-value=2.6e-11  Score=133.30  Aligned_cols=140  Identities=14%  Similarity=0.161  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCc
Q 007454          168 ESGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                      .....+..++++++++|+ +..++|..                        ++.++ ..+...+++.|++|.+++.  +.
T Consensus        67 ~~pt~~~le~~la~l~g~-~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~--~~  143 (437)
T PRK05613         67 TNPTVEALENRIASLEGG-VHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVEN--PD  143 (437)
T ss_pred             cChHHHHHHHHHHHHhCC-CeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECC--CC
Confidence            334567888899999987 35555431                        22222 2223455678989888872  11


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                         +.++|++.|.+      +|+++.+-+.+|.+|.++|++.| ++|+++|+.|++|++|..|..   .+.-.+++|+++
T Consensus       144 ---d~e~l~~~l~~------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~---~~p~~~GaDivv  211 (437)
T PRK05613        144 ---DPESWQAAVQP------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL---VRPLELGADVVV  211 (437)
T ss_pred             ---CHHHHHHhCCc------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc---cChHHhCCCEEE
Confidence               67888888863      58888888999999999999966 589999999999999988862   333357899999


Q ss_pred             EcccccCCCCCCceEEEEEeC
Q 007454          302 CSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +|+||++|++-.|+|.+++.+
T Consensus       212 ~S~~K~l~G~gd~~gG~vv~~  232 (437)
T PRK05613        212 ASLTKFYTGNGSGLGGVLIDG  232 (437)
T ss_pred             eeccceecCCCcceeEEEEec
Confidence            999999993213568888743

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.44  E-value=1.2e-11  Score=133.06  Aligned_cols=293  Identities=14%  Similarity=0.120  Sum_probs=189.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCC-cEEEecc---------------Cc----------hHHHHHHHHHHcCC-EEEEEecc
Q 007454          167 QESGLESAMKKRIMDFLNISEN-DYVYDYE---------------SE----------AVEAMIRTSEKRGA-RVMSAEFS  219 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna~~~-e~vf~~e---------------s~----------sV~~~~~~a~~~Ga-~V~~~~~~  219 (603)
                      ...+++.++++.+.++|+++.+ ++++-.-               ..          +-.|+.+.+++.|. +|..+.++
T Consensus        36 ~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g~FG~r~~~eia~~~g~~~v~~l~~~  115 (374)
T TIGR01365        36 LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWESFGKGWVTDVTKQLKLPDVRVLEAE  115 (374)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEECHHHHHHHHHHHHhcCCCCcEEEcCC
Confidence            3578999999999999998433 3333110               00          12233388888999 58888888


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDF  299 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Df  299 (603)
                      | .-.++.++++.   .     +.   |++.|.--.||+.+|++.+.... +++.++|||++.+|-  .+++++.  +|+
T Consensus       116 ~-g~~~~~~~ve~---~-----~~---v~~vhnETSTGv~npv~~i~~~~-~~~lliVDavSs~g~--~~l~~d~--iDv  178 (374)
T TIGR01365       116 Y-GKLPDLKKVDF---K-----ND---VVFTWNGTTSGVRVPNGDFIPAD-REGLTICDATSAAFA--QDLDYHK--LDV  178 (374)
T ss_pred             C-CCCCCHHHcCC---C-----CC---EEEecCCCchheecccccccccc-CCCcEEEEccchhcC--CCCChhH--CcE
Confidence            7 45567777762   1     12   56888888999999997443221 589999999888877  6899984  999


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCC--CCCC--CceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVD--NTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p--~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      +++|..|.+|. |.|++++++++.+++..+.  .++.  ....+... ..++ .      .+           ....|++
T Consensus       179 ~~tgsQK~L~~-ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~-~~~~-~------~~-----------~~~~t~~  238 (374)
T TIGR01365       179 VTFSWQKVLGG-EGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKG-GKLN-K------KI-----------FEGSTIN  238 (374)
T ss_pred             EEEechhccCC-CCceEEEEECHHHHHHHhhcCCCCCChhhhccccc-cchh-h------hh-----------hcCCCCC
Confidence            99999999987 7899999999998755431  1111  11000000 0000 0      00           0123555


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhc
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      .+.+.++-             ++.                        .+|+.+.+. |++...+|-+.+.+.+++.|.+
T Consensus       239 TP~v~~l~-------------a~~------------------------~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~  281 (374)
T TIGR01365       239 TPSMLCVE-------------DWL------------------------DALKWAESIGGLKPLIARADDNLAVLEAFVAK  281 (374)
T ss_pred             ChHHHHHH-------------HHH------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            55554442             122                        577777676 8999999999999999999998


Q ss_pred             CCCCCCCCCceEEEeCCCCCCCCC-CEEEEEEccCCCCcc--C-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454          455 LQHPNTEGNALVKIYGPKIRFDRG-PALAFNVFDWKREKI--E-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       455 L~h~~~~g~plv~Iygp~~~~~rg-~ivsFnv~~~~g~~v--~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~  526 (603)
                      +.        ...++... +..|. .++++.+++..-..+  +     ...+.+.+.++||.+..|...           
T Consensus       282 lg--------~l~~~~~~-~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~-----------  341 (374)
T TIGR01365       282 NN--------WIHFLAET-PEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYR-----------  341 (374)
T ss_pred             CC--------CcccCCCC-hhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccc-----------
Confidence            73        13344421 12344 456677744210000  1     245666666779998766211           


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                                              .. ...+||.---.-+.+||++|+++|.
T Consensus       342 ------------------------~~-~~~fRIg~~G~i~~~di~~l~~~l~  368 (374)
T TIGR01365       342 ------------------------DA-PSGLRIWCGATVEKSDLECLCPWLD  368 (374)
T ss_pred             ------------------------cC-CCceEEecCCcCCHHHHHHHHHHHH
Confidence                                    11 1478998888899999999998874

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PRK09105 putative aminotransferase; Provisional

Probab=99.44  E-value=2.4e-11  Score=130.82  Aligned_cols=183  Identities=15%  Similarity=0.134  Sum_probs=122.6

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.+|||.+...+ +|+.+++++.+....                     .   +  .|+. . . ..+.|+.|++++|+
T Consensus        43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~---------------------~---~--~Y~~-~-~-~~~Lr~aia~~~~v   93 (370)
T PRK09105         43 EGAVFLNANECPLGPSPAARDAAARSAAL---------------------S---G--RYDL-E-L-EDDLRTLFAAQEGL   93 (370)
T ss_pred             CCcEEecCCCCCCCCCHHHHHHHHHHHHH---------------------h---c--CCCC-c-h-HHHHHHHHHHHhCc
Confidence            5679999998764 577888887543210                     0   0  0111 1 1 56799999999999


Q ss_pred             CCCcEEEeccCc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          186 SENDYVYDYESE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       186 ~~~e~vf~~es~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ++++++++..+.                      .-......++..|+++..++.+ +++.++.++|++. .      ++
T Consensus        94 ~~e~I~it~Gs~~ai~~~~~~l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~-~------~~  165 (370)
T PRK09105         94 PADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLR-ADGAHDVKAMLAA-D------PN  165 (370)
T ss_pred             ChhhEEEcCChHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCC-CCCCCCHHHHHhc-C------CC
Confidence            999997753221                      1122334566789999888876 3566888888765 2      25


Q ss_pred             eeEEEEeCccccccccccHHHHH-HHH--hCCcEEEEeccc--cCCCCCCCCCCCCCCCcEEE-EcccccCCCCCCc--e
Q 007454          244 RGLFVFPLHSRMTGARYPYLWMR-IAQ--ENDWHILIDACA--LGPKDMDSFGLSLVRPDFLI-CSFYQIFGENPSG--F  315 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i~-~a~--e~g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv-~S~hK~fG~~P~G--~  315 (603)
                      ++++.++.-+|.||..+|.+.+. +++  +++.++++|.+.  +.+.. ..+++...+.++++ .|+-|.||  ..|  +
T Consensus       166 ~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~-s~~~~~~~~~~vi~~~SfSK~~g--~~GlRi  242 (370)
T PRK09105        166 AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAP-SVVDLVAQRKDLIVLRTFSKLYG--MAGMRL  242 (370)
T ss_pred             CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCc-chHHHHhhCCCEEEEecccHhhc--CCccce
Confidence            78999999999999999998664 433  358999999874  22210 12344344567555 58889999  558  9


Q ss_pred             EEEEEeCCCCcCcC
Q 007454          316 GCLFVKKSTVPILV  329 (603)
Q Consensus       316 G~L~vkk~~~~~L~  329 (603)
                      |+++..+++++.+.
T Consensus       243 G~~v~~~~~i~~l~  256 (370)
T PRK09105        243 GLAAARPDLLAKLA  256 (370)
T ss_pred             eeeecCHHHHHHHH
Confidence            99998776654443

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.44  E-value=2.6e-11  Score=128.93  Aligned_cols=180  Identities=16%  Similarity=0.148  Sum_probs=117.0

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.++|+.+...+ +++.+.+++.+.+...                      .   ..|...   -..+.|+.|++++|+
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~----------------------~---~~y~~~---~~~~lr~aia~~~~~   75 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDD----------------------L---RLYPDP---NADALRQAIAAYYGL   75 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhh----------------------h---hcCCCC---cHHHHHHHHHHHhCC
Confidence            4678999877765 3667777776532210                      0   001100   125899999999999


Q ss_pred             CCCcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          186 SENDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       186 ~~~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ++++++++..+. +                     -......++..|+++..++++ +++.++.++|++          .
T Consensus        76 ~~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~----------~  144 (353)
T PRK05387         76 DPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD-DDFSIDVEDYLR----------P  144 (353)
T ss_pred             CHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC-CCCCCCHHHHHh----------c
Confidence            999997764321 1                     112234456679999988886 356788887752          2


Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHhC-CcEEEEeccc--cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEE
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQEN-DWHILIDACA--LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGC  317 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~-g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~  317 (603)
                      +++++++.-+|.||.++|.+.+ ++++.. ++++++|-+-  +.+..+.++ ++...-.+++.|+.|.||.  .|  +|.
T Consensus       145 ~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~--~GlR~G~  221 (353)
T PRK05387        145 NGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPL-IDRYPNLLVVQTFSKSRSL--AGLRVGF  221 (353)
T ss_pred             CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHH-HhhCCCEEEEEehhHhhcc--hhhhcee
Confidence            4678888999999999999855 466554 9999999752  222210111 1223457999999999984  36  888


Q ss_pred             EEEeCCCCcCc
Q 007454          318 LFVKKSTVPIL  328 (603)
Q Consensus       318 L~vkk~~~~~L  328 (603)
                      ++..++.++.+
T Consensus       222 ~~~~~~~~~~l  232 (353)
T PRK05387        222 AIGHPELIEAL  232 (353)
T ss_pred             eecCHHHHHHH
Confidence            88766554433

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.42  E-value=1.4e-12  Score=135.85  Aligned_cols=146  Identities=12%  Similarity=0.083  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEeccCCc----
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEFSWPR----  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~----  222 (603)
                      ...+.++++++++++|++. -++++..                      .++...+.......|+++.+++.++..    
T Consensus        58 ~g~i~~~~~~~A~~~ga~~-~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~  136 (294)
T cd00615          58 TGPIKEAQELAARAFGAKH-TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGI  136 (294)
T ss_pred             ChHHHHHHHHHHHHhCCCC-EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCc
Confidence            3568899999999999853 2322211                      112222333445578888888775422    


Q ss_pred             -cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC-----CCCCCCCCCCCC
Q 007454          223 -LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG-----PKDMDSFGLSLV  295 (603)
Q Consensus       223 -g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~-----~~~m~~ldls~~  295 (603)
                       +.++.++|++.|...    +++++++++.. |.+|..+|++.| ++|+++|+++++|+++..     +.  .+.+....
T Consensus       137 ~~~i~~~~l~~~l~~~----~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~--~~~~~~~~  209 (294)
T cd00615         137 AGGIPPETFKKALIEH----PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPI--LPSSAAMA  209 (294)
T ss_pred             CCCCCHHHHHHHHHhC----CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcc--cCcchhhc
Confidence             468999999999641    35788888864 789999999866 589999999999998764     32  35555567


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ++|+++.|+||++++ |++.|+|++++.
T Consensus       210 ~~div~~S~hK~l~g-~~~~~~l~~~~~  236 (294)
T cd00615         210 GADIVVQSTHKTLPA-LTQGSMIHVKGD  236 (294)
T ss_pred             CCcEEEEchhcccch-HhHHHHHHhCCC
Confidence            899999999999886 888899988776

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PRK04311 selenocysteine synthase; Provisional

Probab=99.42  E-value=3.2e-12  Score=141.09  Aligned_cols=187  Identities=16%  Similarity=0.212  Sum_probs=129.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .+.||+++.|.+++++++++++.+++..        |            .|+......| .....++.+++.+++++|+.
T Consensus        85 tg~v~~tNlg~s~l~~~v~eav~~~~~~--------~------------~~le~~l~~g-~~g~r~~~~e~~lA~l~Gae  143 (464)
T PRK04311         85 TGVVLHTNLGRALLSEAAIEAVTEAARG--------Y------------SNLEYDLATG-KRGSRDRALAALLCALTGAE  143 (464)
T ss_pred             CccEEeccCCCCCCCHHHHHHHHHHHhc--------c------------cccccchhhc-ccchHHHHHHHHHHHHhCCC
Confidence            4679999999999999999998775431        1            1221111111 23456789999999999985


Q ss_pred             CCcEEEec-----------------------cCch---HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 ENDYVYDY-----------------------ESEA---VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~~e~vf~~-----------------------es~s---V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      . -++|..                       ++..   ...+....++.|++++.++.+   ...+.+++++.|..    
T Consensus       144 ~-a~vv~sgtaAl~l~l~~l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~---~~t~~~dle~aI~~----  215 (464)
T PRK04311        144 D-ALVVNNNAAAVLLALNALAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT---NRTHLRDYEQAINE----  215 (464)
T ss_pred             e-EEEECCHHHHHHHHHHHhCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC---CCCCHHHHHHhcCc----
Confidence            2 333311                       1110   111223456678888888653   34678899998863    


Q ss_pred             CCCeeEEEEeCcccc--cc--ccccHHHH-HHHHhCCcEEEEeccc--------cC-CCCCCCCCCC---CCCCcEEEEc
Q 007454          241 KKQRGLFVFPLHSRM--TG--ARYPYLWM-RIAQENDWHILIDACA--------LG-PKDMDSFGLS---LVRPDFLICS  303 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~--TG--~~~pl~~i-~~a~e~g~~vlvDAaq--------~~-~~~m~~ldls---~~~~Dflv~S  303 (603)
                        +|+++.+.+.||.  +|  ...|++.| ++||++|+++++|+++        ++ ++  .+ ++.   ++++|++++|
T Consensus       216 --~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~--~p-~~~~~l~~GaDiv~fS  290 (464)
T PRK04311        216 --NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPD--EP-TVQELLAAGVDLVTFS  290 (464)
T ss_pred             --cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCC--CC-chhhHHhcCCcEEEec
Confidence              6899999999996  55  56899855 6899999999999942        11 12  12 333   3799999999


Q ss_pred             ccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          304 FYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       304 ~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      +|||+|+ | ..|++++|++.++.|+
T Consensus       291 g~K~LgG-p-~~G~i~g~~~li~~l~  314 (464)
T PRK04311        291 GDKLLGG-P-QAGIIVGKKELIARLK  314 (464)
T ss_pred             CcccccC-C-ceEEEEEcHHHHHHHh
Confidence            9999986 6 5899999998876665

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.41  E-value=2.4e-11  Score=131.67  Aligned_cols=131  Identities=12%  Similarity=0.037  Sum_probs=97.4

Q ss_pred             HHHHHHcCCCCCcEEEe-ccCchHHHH-HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccc
Q 007454          177 KRIMDFLNISENDYVYD-YESEAVEAM-IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR  254 (603)
Q Consensus       177 ~~Ia~~lna~~~e~vf~-~es~sV~~~-~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn  254 (603)
                      ..+..+++. -++++.. ........+ .+.+++.|.+|.+++..      +.++++++|..      +|+||.+-+.+|
T Consensus        92 ~~~~~ll~~-GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~------d~~~l~~~l~~------~TrlV~~EtpsN  158 (395)
T PRK08114         92 NAILAFVEQ-GDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL------IGADIAKLIQP------NTKVVFLESPGS  158 (395)
T ss_pred             HHHHHHcCC-CCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC------CHHHHHHhcCC------CceEEEEECCCC
Confidence            344455542 3455543 223233222 34567889999998742      56788888863      689999999999


Q ss_pred             cccccccHHHH-HHHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC--ceEEEEEeCCC
Q 007454          255 MTGARYPYLWM-RIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS--GFGCLFVKKST  324 (603)
Q Consensus       255 ~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~--G~G~L~vkk~~  324 (603)
                      ++|.+.|++.| ++||++  |+.++||+++..|.  . ++..++++|+++.|.||++++ |.  +.|+++.+++.
T Consensus       159 p~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~--~-~~pl~~GaDivv~S~tKyl~G-hsdv~~G~v~~~~~~  229 (395)
T PRK08114        159 ITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV--L-FKALDFGIDISIQAGTKYLVG-HSDAMIGTAVANARC  229 (395)
T ss_pred             CCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc--c-cCHHHcCCcEEEEcCcccccC-CCcceeEEEEcCHHH
Confidence            99999999966 589997  59999999999997  3 888889999999999998776 64  67777665543

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.41  E-value=4.5e-12  Score=118.64  Aligned_cols=108  Identities=21%  Similarity=0.210  Sum_probs=83.9

Q ss_pred             HHHHHcCCEEEEEeccCCccccCH--HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINS--EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~--~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa  280 (603)
                      ..++..|+++..++.+. ++....  +++++.+.     .++++++.+++.+|.+|..+|++.+ +.|+++|+++++|++
T Consensus        57 ~~~~~~g~~~~~v~~~~-~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a  130 (170)
T cd01494          57 VAAELAGAKPVPVPVDD-AGYGGLDVAILEELKA-----KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAA  130 (170)
T ss_pred             hHHHhcCCEEEEeccCC-CCccchhhhhhhhccc-----cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecc
Confidence            44567789999888763 332222  23433222     3578999999999999999999866 579999999999999


Q ss_pred             ccCCCCCCCC---CCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          281 ALGPKDMDSF---GLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       281 q~~~~~m~~l---dls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      +.++.  ...   +....++|+++.|+||+||  +.|.|+|++|
T Consensus       131 ~~~~~--~~~~~~~~~~~~~d~~~~s~~K~~~--~~~~G~l~~~  170 (170)
T cd01494         131 SAGGA--SPAPGVLIPEGGADVVTFSLHKNLG--GEGGGVVIVK  170 (170)
T ss_pred             ccccc--ccccccccccccCCEEEEEcccccC--CCceEEEEeC
Confidence            98876  343   5777889999999999999  4699999986

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.40  E-value=3.7e-11  Score=128.43  Aligned_cols=140  Identities=8%  Similarity=0.097  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc-h-------------------HHHHHHHHHHcCCEEEEEeccCCcc-ccCHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE-A-------------------VEAMIRTSEKRGARVMSAEFSWPRL-RINSEKL  230 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~-s-------------------V~~~~~~a~~~Ga~V~~~~~~~~~g-~i~~~~L  230 (603)
                      ..+.|+.|++++++++++++++..+. +                   -......++..|+++..++++..++ .++ .++
T Consensus        57 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~~g~viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~  135 (356)
T PRK08056         57 YRHLHQALARHHQVPASWILAGNGETESIFAVVSGLKPRRAMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAI  135 (356)
T ss_pred             HHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHH
Confidence            46899999999999999997754321 1                   1122345667789998888753222 344 344


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCcccccccccc---HH-HHHHHHhCCcEEEEecc--ccCCCC--CCCCCCCCCCCcEEEE
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDAC--ALGPKD--MDSFGLSLVRPDFLIC  302 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~-~i~~a~e~g~~vlvDAa--q~~~~~--m~~ldls~~~~Dflv~  302 (603)
                      .+.+.      ++++++.++..+|.||..+|   ++ +++.|+++++++++|.+  .+....  ..++ +.....++++.
T Consensus       136 ~~~~~------~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~i~~~  208 (356)
T PRK08056        136 LEALT------PDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ-LADNPHLWVLR  208 (356)
T ss_pred             HHhcc------CCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH-hccCCCEEEEE
Confidence            45453      36889999999999999999   44 33578999999999997  222110  0111 33455779999


Q ss_pred             cccccCCCCCCc--eEEEEEe
Q 007454          303 SFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vk  321 (603)
                      |++|+||.  .|  +|.++..
T Consensus       209 S~SK~~~~--~G~RiG~~v~~  227 (356)
T PRK08056        209 SLTKFYAI--PGLRLGYLVNS  227 (356)
T ss_pred             echhhccC--cchhheeeecC
Confidence            99999993  35  7777653

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.40  E-value=4.2e-11  Score=129.42  Aligned_cols=285  Identities=12%  Similarity=0.038  Sum_probs=165.9

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ..+...|++++.+++++.++.++.++|+++|..      +|+++...   |.+|...|++.| ++|+++|++|++|++|.
T Consensus        88 ~~~~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~------~tkav~~~---~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a  158 (379)
T PRK11658         88 NMIVLLGATPVMVDVDRDTLMVTPEAIEAAITP------RTKAIIPV---HYAGAPADLDAIRAIGERYGIPVIEDAAHA  158 (379)
T ss_pred             HHHHHcCCEEEEEecCCCcCCcCHHHHHHhccc------CCeEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECCCc
Confidence            344567999999998865667899999998863      57777633   459999999855 68999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe--CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK--KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk--k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                      .|.......+..++.|+++|+.+|.+..   |-|.+++.  ++..+.+++....|....  .... +....     .   
T Consensus       159 ~g~~~~~~~~g~~g~~~~Sf~~~K~l~~---g~GG~v~~~~~~~~~~~~~~~~~G~~~~--~~~~-~~~~~-----~---  224 (379)
T PRK11658        159 VGTYYKGRHIGARGTAIFSFHAIKNITC---AEGGLVVTDDDELADRLRSLKFHGLGVD--AFDR-QTQGR-----A---  224 (379)
T ss_pred             cCCeECCeecCCCCCEEEeCCCCCcCcc---cCceEEEECCHHHHHHHHHHHHcCCCcc--hhhh-hcccC-----C---
Confidence            8762122236667788888888887653   44555554  344444553222232110  0000 00000     0   


Q ss_pred             cCcccccccccCCC-ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          361 QTSKSKQEKVAATN-TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       361 ~~~~~~~~~e~GT~-n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                       .....  ++.|+. ++.   .+.                                        +|+.+++.-+++.+.+
T Consensus       225 -~~~~~--~~~G~n~~~~---~l~----------------------------------------AAl~~~ql~~l~~~~~  258 (379)
T PRK11658        225 -PQAEV--LTPGYKYNLA---DIN----------------------------------------AAIALVQLAKLEALNA  258 (379)
T ss_pred             -Cccee--eccccccCcC---HHH----------------------------------------HHHHHHHHHHHHHHHH
Confidence             00001  234542 111   111                                        4666555557899999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC-CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454          440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW  518 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r-g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~  518 (603)
                      +-+.+.+++.+.|++++        .+.++.|.....+ ..++.|.+..... .++.+.+.+.+.++||.++  .+|.+.
T Consensus       259 ~r~~~a~~~~~~L~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~L~~~gI~~~--~~~~~~  327 (379)
T PRK11658        259 RRREIAARYLQALADLP--------FQPLSLPAWPHQHAWHLFIIRVDEERC-GISRDALMEALKERGIGTG--LHFRAA  327 (379)
T ss_pred             HHHHHHHHHHHHhcCCC--------CccCcCCCCCCceeEEEEEEEECCccc-cCCHHHHHHHHHHCCCCCc--ccCcCc
Confidence            99999999999998763        2333333321112 2466677753210 1344555555567899755  344332


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      ...+.       ........+  ..+.    +......|.+-++..-|.|||+++++.|++++
T Consensus       328 ~~~~~-------~~~~~~~~~--~p~~----~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        328 HTQKY-------YRERFPTLS--LPNT----EWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             ccChh-------hhccCCCCC--ChHH----HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            11111       110000000  0000    11122578888999999999999999999875

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.40  E-value=2e-10  Score=124.55  Aligned_cols=318  Identities=14%  Similarity=0.126  Sum_probs=190.1

Q ss_pred             CCceeeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa------~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++      .+.-++.+++++.+.+....                 ......       -..+...+..++++
T Consensus        34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----------------~~~~~~-------~~~~~~~~l~~~l~   89 (413)
T cd00610          34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLT-----------------HFSLGF-------FYNEPAVELAELLL   89 (413)
T ss_pred             CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCc-----------------CccCcc-------cCCHHHHHHHHHHH
Confidence            5678999876      33456888888765432110                 000000       01355678999999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEec--------------------------------cCC----
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEF--------------------------------SWP----  221 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~--------------------------------~~~----  221 (603)
                      ++++.++++++|... ++++...+..++  ..|.+|.....                                +++    
T Consensus        90 ~~~~~~~~~v~~~~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (413)
T cd00610          90 ALTPEGLDKVFFVNSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYR  169 (413)
T ss_pred             HhCCCCCCEEEEcCcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCcccc
Confidence            999987788877543 344544444443  22344433221                                100    


Q ss_pred             ---ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCC-CC--CCCC
Q 007454          222 ---RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGP-KD--MDSF  290 (603)
Q Consensus       222 ---~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~-~~--m~~l  290 (603)
                         ....+.++|++.+...   +.++++|++....+.+|.+.|    ++.+ ++|+++|+++++|-++.+- ..  +..+
T Consensus       170 ~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~  246 (413)
T cd00610         170 PPAELADDLEALEEALEEH---PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAF  246 (413)
T ss_pred             chhhHHHHHHHHHHHHhcC---CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhH
Confidence               0112567788877631   135788888889999999988    7655 5799999999999986531 10  0122


Q ss_pred             CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC--CCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454          291 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV--DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE  368 (603)
Q Consensus       291 dls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~--p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  368 (603)
                      +.....||++++|  |.+|. +-.+|+++.++++++.+.  ....++                                 
T Consensus       247 ~~~~~~~d~~t~s--K~l~~-g~~~g~~~~~~~~~~~~~~~~~~~~~---------------------------------  290 (413)
T cd00610         247 EHFGVEPDIVTLG--KGLGG-GLPLGAVLGREEIMDAFPAGPGLHGG---------------------------------  290 (413)
T ss_pred             hhcCCCCCeEEEc--ccccC-ccccEEEEEcHHHHHhhccCCCCCCC---------------------------------
Confidence            3333468988776  99884 344899999887765541  000000                                 


Q ss_pred             cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454          369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L  448 (603)
                        ..+.|..+.++..                                        ++++.+++   +.+.++++.+.+++
T Consensus       291 --t~~~~~~~~~a~~----------------------------------------a~l~~l~~---~~~~~~~~~~~~~l  325 (413)
T cd00610         291 --TFGGNPLACAAAL----------------------------------------AVLEVLEE---EGLLENAAELGEYL  325 (413)
T ss_pred             --CCCcCHHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHH
Confidence              0111222222111                                        46776654   45678889999999


Q ss_pred             HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC----ccCHHHHHHHHhcCCcEEeeCcccCccCCchhh
Q 007454          449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ  524 (603)
Q Consensus       449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~----~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~  524 (603)
                      .++|.++...    .+.+.-  .   ..+|+++.+.+.+....    ......+.+.+.++||.++.+.           
T Consensus       326 ~~~l~~~~~~----~~~~~~--~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-----------  385 (413)
T cd00610         326 RERLRELAEK----HPLVGD--V---RGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-----------  385 (413)
T ss_pred             HHHHHHHHhh----CCcEEE--e---ecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-----------
Confidence            9999876320    111211  0   23688999988763210    0112233344456688775431           


Q ss_pred             hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                                   ...+|+++++..|.+||+++++.|.+.|
T Consensus       386 -----------------------------~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         386 -----------------------------GNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             -----------------------------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence                                         1479999999999999999999998754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.40  E-value=1.7e-10  Score=123.13  Aligned_cols=181  Identities=9%  Similarity=0.100  Sum_probs=119.5

Q ss_pred             ceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          109 HTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       109 ~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      .+=||.+-.. ++|+.+++++.+++...                     +.   ..|+.   ....+.|+.|++++++++
T Consensus        24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~---------------------~~---~~y~~---~~~~~lr~~ia~~~~~~~   76 (351)
T PRK14807         24 KYKMDANETPFELPEEVIKNIQEIVKSS---------------------QV---NIYPD---PTAEKLREELARYCSVVP   76 (351)
T ss_pred             eeEccCCCCCCCCCHHHHHHHHHHhhcC---------------------cc---cCCCC---ccHHHHHHHHHHHhCCCc
Confidence            3457776666 46788888876643210                     00   00110   113578999999999999


Q ss_pred             CcEEEeccCc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          188 NDYVYDYESE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       188 ~e~vf~~es~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                      ++++++..+.                      .-......++..|+++..++++ +++.++.++|++.+..     .+++
T Consensus        77 ~~i~it~G~~~~l~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~~~~-----~~~k  150 (351)
T PRK14807         77 TNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK-EDYTYDVGSFIKVIEK-----YQPK  150 (351)
T ss_pred             ccEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC-CCCCCCHHHHHHHhhc-----cCCC
Confidence            9997754321                      1122234456789999999887 3567899999998863     2588


Q ss_pred             EEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc--cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 007454          246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA--LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~v  320 (603)
                      ++.++..+|.||..+|.+.+ +++++++..+++|.+.  +.+..+.++ +....--+++.|+-|.||.  .|  +|.++.
T Consensus       151 ~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~-~~~~~~vi~~~S~SK~~~~--~GlRiG~~v~  227 (351)
T PRK14807        151 LVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGNTIVDV-INEFENLIVLRTLSKAFGL--AGLRVGYAVA  227 (351)
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhcccchHHH-hhhCCCEEEEecchHhccc--chhceeeeec
Confidence            88899999999999999866 4777777789999875  222211111 1222234788999999993  36  677765


Q ss_pred             eCCCC
Q 007454          321 KKSTV  325 (603)
Q Consensus       321 kk~~~  325 (603)
                      .++++
T Consensus       228 ~~~~~  232 (351)
T PRK14807        228 NENIL  232 (351)
T ss_pred             CHHHH
Confidence            54443

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.40  E-value=2.3e-11  Score=129.91  Aligned_cols=145  Identities=10%  Similarity=0.177  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      .+.|++|++++|+++++++++..+.                       .-......++..|+++..++.+ .++.++.+.
T Consensus        63 ~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~-~~~~~~~~~  141 (354)
T PRK04635         63 PELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLT-ADYQLPLDY  141 (354)
T ss_pred             HHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecC-CCCCCCHHH
Confidence            4789999999999999997753221                       1111233456789999999886 356778877


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHh-CCcEEEEeccccC--CCCCCCCCCCCCCCc-EEEEcc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQE-NDWHILIDACALG--PKDMDSFGLSLVRPD-FLICSF  304 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e-~g~~vlvDAaq~~--~~~m~~ldls~~~~D-flv~S~  304 (603)
                      +++ +       ++++++.++.-+|.||.++|.+.+. +++. .+++|++|.+..-  +.. ..+++...... +++-||
T Consensus       142 l~~-~-------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~-s~~~~~~~~~~~iv~~S~  212 (354)
T PRK04635        142 IEQ-L-------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEY-SVADLLASYPNLVVLRTL  212 (354)
T ss_pred             HHh-c-------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCc-chHHHHhhCCCEEEEech
Confidence            762 3       2589999999999999999998654 5554 3699999997421  110 01111111111 477799


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      +|+||  +.|  +|.++++++.++.+.
T Consensus       213 SK~~~--l~GlRlG~~i~~~~~~~~l~  237 (354)
T PRK04635        213 SKAFA--LAGARCGFTLANEELIEILM  237 (354)
T ss_pred             HHHhh--hhHHHHhhhhCCHHHHHHHH
Confidence            99999  457  699998877655443

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.39  E-value=4.3e-11  Score=129.24  Aligned_cols=148  Identities=15%  Similarity=0.177  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHc------CCCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC-cc
Q 007454          173 SAMKKRIMDFL------NISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l------na~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      .+.|+.|++++      ++++++++++... +++..                     ....++..|+++..++.++. +.
T Consensus        71 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  150 (393)
T PRK05764         71 PELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGF  150 (393)
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCC
Confidence            46778888876      4677888775432 12211                     22345567899998888632 34


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccC----CC---CCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PK---DMDSFGL  292 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~----~~---~m~~ldl  292 (603)
                      .++.++|++.+..      ++++++++.-+|.||.++|.+    +++.|+++|+++++|.+...    +.   .+..+..
T Consensus       151 ~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  224 (393)
T PRK05764        151 KLTVEQLEAAITP------KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSP  224 (393)
T ss_pred             cCCHHHHHHhhCc------cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCC
Confidence            6788999998853      578999999999999999854    33568999999999976321    11   0111212


Q ss_pred             CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          293 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      ...+.++++.|+-|.||  +.|  +|+++.++++++.+
T Consensus       225 ~~~~~~i~~~s~SK~~~--~~G~RiG~i~~~~~~~~~~  260 (393)
T PRK05764        225 ELRDRTITVNGFSKAYA--MTGWRLGYAAGPKELIKAM  260 (393)
T ss_pred             CCcCCEEEEecCccccc--CccceeEEEecCHHHHHHH
Confidence            23456889999999999  447  78888766554433

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.39  E-value=1.1e-10  Score=127.18  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=75.3

Q ss_pred             HHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC
Q 007454          207 EKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK  285 (603)
Q Consensus       207 ~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~  285 (603)
                      ++.|+++..++      .++.++++++|.+      +|++|.+...+|.||.+.|++.| ++|+++|+.+++|+++..+.
T Consensus       126 ~~~G~~v~~vd------~~d~e~l~~ai~~------~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~  193 (398)
T PRK07504        126 PRYGIESTLVD------GLDLDNWEKAVRP------NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPL  193 (398)
T ss_pred             hhcCeEEEEEC------CCCHHHHHHhcCc------CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccc
Confidence            34566655553      2578888888853      68999999999999999999966 58999999999999987664


Q ss_pred             CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE-eCC
Q 007454          286 DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV-KKS  323 (603)
Q Consensus       286 ~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v-kk~  323 (603)
                      .-.++   .+++|+++.|++|+||++...+|..++ +++
T Consensus       194 ~~~~~---~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~  229 (398)
T PRK07504        194 FQKPL---ELGAHIVVYSATKHIDGQGRCLGGVVLSDKA  229 (398)
T ss_pred             cCCch---hhCCCEEEeeccccccCCccceEEEEEeCcH
Confidence            11222   458999999999999852123654444 443

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.38  E-value=2.1e-11  Score=131.96  Aligned_cols=144  Identities=13%  Similarity=0.204  Sum_probs=98.6

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCC-ccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWP-RLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-~g~  224 (603)
                      +.|+.|++++      ++++++++++..+. ++.                     .....++..|+++..++++.. +..
T Consensus        74 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~  153 (391)
T PRK08361         74 ELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQ  153 (391)
T ss_pred             HHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCC
Confidence            6777777776      46788887654321 111                     123345567888888888632 346


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEecccc--C--CCCCCCC-CCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACAL--G--PKDMDSF-GLSLV  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~--~--~~~m~~l-dls~~  295 (603)
                      ++.++|++.+..      ++++++++..+|.||..+|   ++.+ +.|+++++++++|.+-.  .  +....++ .+ ..
T Consensus       154 ~d~~~l~~~i~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~  226 (391)
T PRK08361        154 PDPDELLELITK------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKY-AP  226 (391)
T ss_pred             CCHHHHHHhccc------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhc-CC
Confidence            899999998863      5789999999999999999   4433 56899999999997621  1  1100111 11 12


Q ss_pred             CCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          296 RPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      ..++++.|+.|.||  ..|  +|.+++.++++.
T Consensus       227 ~~~i~~~s~SK~~~--~~GlRiG~~~~~~~~~~  257 (391)
T PRK08361        227 DNTILANSFSKTFA--MTGWRLGFVIAPEQVIK  257 (391)
T ss_pred             CCEEEEecCchhcC--CcHhhhhhhccCHHHHH
Confidence            45789999999999  448  899998766543

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.37  E-value=2.2e-10  Score=125.99  Aligned_cols=103  Identities=18%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      +++.|+++..++ +.    .+.++++++|.      ++|++|.+.+.+|++|.+.|++.| ++||++|+.++||+++..|
T Consensus       129 l~~~Gi~v~~vd-d~----~d~e~l~~ai~------~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~  197 (436)
T PRK07812        129 LPKLGIEVSFVE-DP----DDLDAWRAAVR------PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATP  197 (436)
T ss_pred             hhcCeEEEEEEC-CC----CCHHHHHHhCC------CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence            455677777774 21    26778888775      368999999999999999999966 5899999999999999887


Q ss_pred             CCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCC
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKST  324 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~  324 (603)
                      .  ..-.+ .+++|+++.|+||++|+  .|  +|.+++....
T Consensus       198 ~--~~~pl-~~GaDivv~S~tK~lgg--~G~~i~G~vv~~~~  234 (436)
T PRK07812        198 Y--LIRPL-EHGADIVVHSATKYLGG--HGTAIAGVIVDGGT  234 (436)
T ss_pred             c--cCCch-hcCCCEEEEecccccCC--CCCeEEEEEEcCCc
Confidence            6  22223 57999999999999994  35  8888886543

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.36  E-value=9.5e-11  Score=126.16  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCchH-------------------------HHHHHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEAV-------------------------EAMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV-------------------------~~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....++.+++|++++|.. +-++|..-..++                         ..+...++..|+++..++.+    
T Consensus        39 ~p~~~~le~~la~l~g~~-~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~----  113 (369)
T cd00614          39 NPTVDALEKKLAALEGGE-AALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD----  113 (369)
T ss_pred             ChhHHHHHHHHHHHHCCC-CEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC----
Confidence            344567788889998863 334332111111                         11223344567777766543    


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC  302 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~  302 (603)
                        +.+++++++..      ++++|.+...+|.+|.+.|++.| ++|+++|+++++|.+...|....++   .+++|+++.
T Consensus       114 --d~~~l~~~i~~------~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~~~---~~g~Divv~  182 (369)
T cd00614         114 --DPEALEAAIKP------ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQRPL---ELGADIVVH  182 (369)
T ss_pred             --CHHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCChh---hhCCcEEEe
Confidence              36778887753      68999999999999999999966 5899999999999997776511233   358999999


Q ss_pred             cccccCCCCCCc--eEEEEEeC-CCCcCc
Q 007454          303 SFYQIFGENPSG--FGCLFVKK-STVPIL  328 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk-~~~~~L  328 (603)
                      |++|++|+ +..  .|+++.++ +..+.+
T Consensus       183 S~tK~l~g-~~~~~gG~v~~~~~~l~~~l  210 (369)
T cd00614         183 SATKYIGG-HSDVIAGVVVGSGEALIQRL  210 (369)
T ss_pred             ccceeccC-CCCceEEEEEeCcHHHHHHH
Confidence            99999984 322  67777766 443333

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.35  E-value=5e-11  Score=128.31  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEE
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~  319 (603)
                      +++|+.+...+|.||.+.|++.| ++|+++|+.++||.++..+....+++   +++|+++.|++|++++ |.|  +|+++
T Consensus       132 ~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~Divv~S~sK~l~G-~~g~~~G~v~  207 (366)
T PRK07582        132 GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGADLVVASDTKALTG-HSDLLLGYVA  207 (366)
T ss_pred             CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCcEEEecccccccC-CCCeeEEEEE
Confidence            68999999999999999999966 58999999999999865332114555   4789999999999976 667  47777


Q ss_pred             Ee
Q 007454          320 VK  321 (603)
Q Consensus       320 vk  321 (603)
                      .+
T Consensus       208 ~~  209 (366)
T PRK07582        208 GR  209 (366)
T ss_pred             cC
Confidence            65

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.35  E-value=4.9e-10  Score=121.74  Aligned_cols=293  Identities=15%  Similarity=0.128  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEeccCch---------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYESEA---------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~es~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      ...+.+++|++++|.. +.++|.....+                     ...++...+-.++++.+++..      +.++
T Consensus        44 ~~~~LE~~lA~~~g~e-~al~~~sG~~a~~~~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~------d~~~  116 (392)
T PLN03227         44 AHLELEQCMAEFLGTE-SAILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHN------DMKD  116 (392)
T ss_pred             HHHHHHHHHHHHhCCC-cEEEecCcHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCC------CHHH
Confidence            6778999999999985 56666432111                     111222222334455544332      3445


Q ss_pred             HHHHHhhcC--------CCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCC
Q 007454          230 LRKMVVSKG--------KKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGL  292 (603)
Q Consensus       230 L~~~l~~~~--------~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldl  292 (603)
                      +++.+..-+        ..++++++|++....|.+|.+.|++.+ ++|+++|+++++|-++..|.. ..        +++
T Consensus       117 l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~-g~~G~g~~~~~g~  195 (392)
T PLN03227        117 LRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTL-GKSGRGSLEHAGL  195 (392)
T ss_pred             HHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccccccc-CCCCCcHHHHcCC
Confidence            555432110        012468999999999999999999866 589999999999998764420 11        122


Q ss_pred             C-CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          293 S-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       293 s-~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      . ..++|.+++|+.|.+|  |. .|++..+++.++.++... .+.                            .   + .
T Consensus       196 ~p~~~~Div~~slsk~~g--~~-gg~v~~~~~~~~~~~~~~-~~~----------------------------~---~-~  239 (392)
T PLN03227        196 KPMVHAEIVTFSLENAFG--SV-GGMTVGSEEVVDHQRLSG-SGY----------------------------C---F-S  239 (392)
T ss_pred             CCCCCceEEEeechhhhh--cc-CcEEecCHHHHHHHHHhC-cCc----------------------------c---c-c
Confidence            1 2466999999999988  54 355556665543332110 010                            0   1 1


Q ss_pred             CC-CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          372 AT-NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       372 GT-~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      +. +++...+++                                         .+++.+.+  .+...++++.+.++|.+
T Consensus       240 ~~~~p~~~~aa~-----------------------------------------~al~~~~~--~~~~~~~l~~~~~~l~~  276 (392)
T PLN03227        240 ASAPPFLAKADA-----------------------------------------TATAGELA--GPQLLNRLHDSIANLYS  276 (392)
T ss_pred             CCCCHHHHHHHH-----------------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence            11 122222111                                         24433222  34566678888999999


Q ss_pred             HHhcCCCCCCCCCceEEEeC--CCCCCCCCCEEEEEEccCCCCc-cC----HHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454          451 ALMKLQHPNTEGNALVKIYG--PKIRFDRGPALAFNVFDWKREK-IE----PVLVQKLADRENISLSYGSLHHIWFSDKY  523 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iyg--p~~~~~rg~ivsFnv~~~~g~~-v~----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~  523 (603)
                      +|.+..++.     ...+-|  .-.....++|+.+.+.+.+... ..    ...+.+.+.++||.++.-..+...   ..
T Consensus       277 ~L~~~~~~~-----~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~---~~  348 (392)
T PLN03227        277 TLTNSSHPY-----ALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKK---FL  348 (392)
T ss_pred             HHHhcCCcc-----ccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCC---cC
Confidence            997633221     111111  0001246889999985521100 00    013444455679888632111000   00


Q ss_pred             hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                                ...+...+|++++...|.|||+++++.|++.+++-
T Consensus       349 --------------------------~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~  383 (392)
T PLN03227        349 --------------------------QLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI  383 (392)
T ss_pred             --------------------------CCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence                                      11233689999999999999999999999988653

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.33  E-value=2.2e-11  Score=131.49  Aligned_cols=104  Identities=13%  Similarity=0.044  Sum_probs=78.5

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      +++.|.++..+++.+      .++|+++|.      ++|++|.+.+.+|.+|.+.|++.| ++|+++|+++++|+++..|
T Consensus       110 ~~~~gi~v~~~d~~~------~e~l~~~i~------~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g  177 (377)
T TIGR01324       110 LKRMGVDITYYDPLI------GEDIATLIQ------PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAG  177 (377)
T ss_pred             HHhcCcEEEEECCCC------HHHHHHhcC------CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence            345566666554321      266777775      369999999999999999999855 6899999999999999988


Q ss_pred             CCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      ..   ...-++++|+++.|++|++|+ +.+  .|+++.+++.+
T Consensus       178 ~~---~~pl~~gaDivv~S~tK~l~G-~~d~~gG~v~~~~~~~  216 (377)
T TIGR01324       178 LL---FKPLEHGVDISIQAGTKYLVG-HSDIMIGTVVANARTW  216 (377)
T ss_pred             cc---cCccccCceEEEecCceeccC-CCCceEEEEEeCHHHH
Confidence            62   233357999999999999986 544  46676665543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.33  E-value=1e-09  Score=118.64  Aligned_cols=143  Identities=10%  Similarity=0.177  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .+.|+.|++++|+++++++++..+. ++.                     .....++..|+++..++.+ .+..++.++|
T Consensus        89 ~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~-~~~~~d~~~l  167 (380)
T PLN03026         89 RRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT-PDFSLDVPRI  167 (380)
T ss_pred             HHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC-CCCCcCHHHH
Confidence            4799999999999999997754321 111                     1223455679999888876 3567899999


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecccc--CCCCCCCCC-CCCCCCcEEEEcccc
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACAL--GPKDMDSFG-LSLVRPDFLICSFYQ  306 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~--~~~~m~~ld-ls~~~~Dflv~S~hK  306 (603)
                      ++.+..     .+++++.+...+|.||..+|.+.+. +++.. ++|++|.+-.  .... ..+. +....-.+++.||-|
T Consensus       168 ~~~~~~-----~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~-~~~~~~~~~~~viv~~SfSK  240 (380)
T PLN03026        168 VEAVET-----HKPKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQE-SRMKWVKKYDNLIVLRTFSK  240 (380)
T ss_pred             HHHHhc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCc-chHHHHHhCCCEEEEecchH
Confidence            988842     2688999999999999999999664 66544 8999998732  1110 0111 223345688999999


Q ss_pred             cCCCCCCc--eEEEEEeCCCC
Q 007454          307 IFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       307 ~fG~~P~G--~G~L~vkk~~~  325 (603)
                      .||  ..|  +|.++..++.+
T Consensus       241 ~~g--laGlRiGy~~~~~~~i  259 (380)
T PLN03026        241 RAG--LAGLRVGYGAFPLSII  259 (380)
T ss_pred             hhc--CccccceeeecCHHHH
Confidence            999  557  57766554443

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.32  E-value=9.8e-11  Score=127.10  Aligned_cols=138  Identities=14%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccCch------------------------HH-HHHHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYESEA------------------------VE-AMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es~s------------------------V~-~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....++.++++++++|++. -+++..-.++                        .. .+...+++.|+++..++++    
T Consensus        60 ~p~~~~le~~la~l~g~~~-~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~----  134 (390)
T PRK08133         60 NPTVTMFQERLAALEGAEA-CVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT----  134 (390)
T ss_pred             ChHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC----
Confidence            3456789999999999752 2333211111                        11 1223345567777776653    


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC  302 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~  302 (603)
                        +.+++++.|.+      +|++|.+...+|.||.+.|++.| ++|+++|+++++|.+...+..-.++   .+++|+++.
T Consensus       135 --d~~~l~~~i~~------~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~~pl---~~g~Divv~  203 (390)
T PRK08133        135 --DLDAWRAAVRP------NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQQPL---KLGADVVIH  203 (390)
T ss_pred             --CHHHHHHhcCc------CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCCcEEEe
Confidence              57888888753      68999999999999999999855 5899999999999987665411232   357899999


Q ss_pred             cccccCCCCCCc--e-EEEEEeCCC
Q 007454          303 SFYQIFGENPSG--F-GCLFVKKST  324 (603)
Q Consensus       303 S~hK~fG~~P~G--~-G~L~vkk~~  324 (603)
                      |++|++|  +.|  + |+++.+++.
T Consensus       204 S~sK~~~--g~g~~~GG~vv~~~~~  226 (390)
T PRK08133        204 SATKYLD--GQGRVLGGAVVGSKEL  226 (390)
T ss_pred             ecceeec--CCcceEeEEEEcCHHH
Confidence            9999998  445  5 445545443

>PRK08960 hypothetical protein; Provisional

Probab=99.32  E-value=5e-10  Score=121.01  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=124.1

Q ss_pred             HHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHH
Q 007454           96 IRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESA  174 (603)
Q Consensus        96 iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~  174 (603)
                      .|+ .++.-  .+.++||.+..+ ++++.+++++.+.+...    ...|            ..  .         .-..+
T Consensus        24 ~~~-~~~~~--~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~----~~~Y------------~~--~---------~g~~~   73 (387)
T PRK08960         24 ANE-LEAAG--HDVIHLEIGEPDFTTAEPIVAAGQAALAAG----HTRY------------TA--A---------RGLPA   73 (387)
T ss_pred             HHH-HHhcC--CCeEEeCCCCCCCCCCHHHHHHHHHHHhcC----CCcc------------CC--C---------CCCHH
Confidence            444 35543  567999999988 46888888876643210    0000            00  0         11246


Q ss_pred             HHHHHHHHcC------CCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCC-cccc
Q 007454          175 MKKRIMDFLN------ISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWP-RLRI  225 (603)
Q Consensus       175 aR~~Ia~~ln------a~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~g~i  225 (603)
                      .|+.|+++++      +++++++++..+. ++..                     ....++..|+++..++++.. +..+
T Consensus        74 lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  153 (387)
T PRK08960         74 LREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQL  153 (387)
T ss_pred             HHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCC
Confidence            8888898874      7888987764321 2111                     12334556888888888642 2368


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc-CCCCCCCCCCCCCCCc-E
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL-GPKDMDSFGLSLVRPD-F  299 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~-~~~~m~~ldls~~~~D-f  299 (603)
                      +.++|++.+..      ++++++++.-+|.||.++|.+.+    +.|+++|+++++|-+-. .-.+-....+-....+ +
T Consensus       154 d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi  227 (387)
T PRK08960        154 TPALVERHWNA------DTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAF  227 (387)
T ss_pred             CHHHHHHHhCc------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEE
Confidence            89999888763      57888899999999999998633    35789999999998621 1000001111112233 6


Q ss_pred             EEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          300 LICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       300 lv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      ++.|+.|.||  ..|  +|.++..+++++.+
T Consensus       228 ~~~S~SK~~g--~~GlRiG~~~~~~~~~~~~  256 (387)
T PRK08960        228 VLNSFSKYFG--MTGWRLGWLVAPPAAVPEL  256 (387)
T ss_pred             EEeecccccC--CcccEEEEEEcCHHHHHHH
Confidence            7899999999  448  99999876654433

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.32  E-value=7.1e-10  Score=122.34  Aligned_cols=118  Identities=15%  Similarity=0.086  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee--EEEEeCccccccccccHHHHH-HHHhCCcEE
Q 007454          199 VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG--LFVFPLHSRMTGARYPYLWMR-IAQENDWHI  275 (603)
Q Consensus       199 V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~--Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~v  275 (603)
                      +..+.++++--|.+++.++.+..+.++|.++|+++|.+.      |.  .|+-++-.-.||.+=|++.|+ +|+++++++
T Consensus       167 H~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~~~------t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~l  240 (460)
T COG0076         167 HFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAIDEN------TIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWL  240 (460)
T ss_pred             hhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHHhh------ccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcE
Confidence            344455566668888888877327899999999999863      33  377777788899999999876 899999999


Q ss_pred             EEeccccCCCC--C---CCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          276 LIDACALGPKD--M---DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       276 lvDAaq~~~~~--m---~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      |||||-.+..-  +   ..+|...-++|-|++++|||+.. |.|.|++++|+.
T Consensus       241 HVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~a-P~~~G~il~rd~  292 (460)
T COG0076         241 HVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLA-PIGCGVVLFRDE  292 (460)
T ss_pred             EEEccccceeecccCccchhhcCCCCceEEEECcccccCC-CCCceEEEEECH
Confidence            99997433220  0   12244555899999999999887 899999999987

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.32  E-value=1.8e-09  Score=117.00  Aligned_cols=268  Identities=16%  Similarity=0.135  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHcCCC-CCcEEEecc-CchHHHHHHHHHHcC-CEEEEEeccCC------------------------c-cc
Q 007454          173 SAMKKRIMDFLNIS-ENDYVYDYE-SEAVEAMIRTSEKRG-ARVMSAEFSWP------------------------R-LR  224 (603)
Q Consensus       173 ~~aR~~Ia~~lna~-~~e~vf~~e-s~sV~~~~~~a~~~G-a~V~~~~~~~~------------------------~-g~  224 (603)
                      .+..++++++++.+ +++++|... ++++...++.++..| -+|....-.+.                        + ..
T Consensus        88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (398)
T PRK03244         88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEH  167 (398)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceE
Confidence            46777888888854 366666543 456665556555444 23433311100                        0 00


Q ss_pred             ---cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCC
Q 007454          225 ---INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLS  293 (603)
Q Consensus       225 ---i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls  293 (603)
                         .+.++|++.+.      +++++|.+-...|.+|.+.|    ++.+ ++|+++|+++++|-++.+ +..  +..+...
T Consensus       168 ~~~~d~~~l~~~~~------~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~  241 (398)
T PRK03244        168 VPYGDVDALAAAVD------DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHD  241 (398)
T ss_pred             eCCCCHHHHHHhhc------CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhh
Confidence               15778887774      25777777778999999998    6655 489999999999998742 211  1112334


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      ...||++++|  |.+|. .-.+|++++++++++.+.+...+.+                                +  + 
T Consensus       242 ~~~pDi~t~s--K~l~~-G~~ig~~~~~~~~~~~~~~~~~~~t--------------------------------~--~-  283 (398)
T PRK03244        242 GVTPDVVTLA--KGLGG-GLPIGACLAFGPAADLLTPGLHGST--------------------------------F--G-  283 (398)
T ss_pred             CCCCCEEEEc--hhhhC-CcccEEEEEcHHHHhhccCCCCcCC--------------------------------C--C-
Confidence            5579987665  99883 3348999998886654442110000                                0  0 


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .|..+..+.                                        ++.|+.+..   +...+|++.+.++|.+.|.
T Consensus       284 ~~~~~~aaa----------------------------------------~a~l~~~~~---~~~~~~~~~~~~~l~~~L~  320 (398)
T PRK03244        284 GNPVACAAA----------------------------------------LAVLDTIAS---EGLLENAERLGEQLRAGIE  320 (398)
T ss_pred             CCHHHHHHH----------------------------------------HHHHHHHHh---ccHHHHHHHHHHHHHHHHH
Confidence            111111111                                        135554432   3567888999999999999


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      ++.+      |.+.-.     ..+|.++.+.++..     ....+.+.+.++||.++..                     
T Consensus       321 ~~~~------~~~~~v-----~g~g~~~~i~~~~~-----~~~~~~~~l~~~Gv~~~~~---------------------  363 (398)
T PRK03244        321 ALGH------PLVDHV-----RGRGLLLGIVLTAP-----VAKAVEAAAREAGFLVNAV---------------------  363 (398)
T ss_pred             hcCC------CceeeE-----eeccEEEEEEEecc-----HHHHHHHHHHHCCeEEeec---------------------
Confidence            8754      222110     12577787777532     1223444445678887631                     


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                         ...+||+|++...|.+||+++++.|++.+..
T Consensus       364 -------------------~~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~  394 (398)
T PRK03244        364 -------------------APDVIRLAPPLIITDAQVDAFVAALPAILDA  394 (398)
T ss_pred             -------------------CCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence                               0148999999999999999999999998753

>PRK06460 hypothetical protein; Provisional

Probab=99.31  E-value=3.5e-10  Score=122.18  Aligned_cols=147  Identities=11%  Similarity=0.086  Sum_probs=99.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHH-------------------------HHHHHHcCCEEEEE
Q 007454          162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAM-------------------------IRTSEKRGARVMSA  216 (603)
Q Consensus       162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~-------------------------~~~a~~~Ga~V~~~  216 (603)
                      +.|+.......++.|++|++++|+.+ +++|.....++..+                         ...++..|++|..+
T Consensus        37 ~~y~r~~~p~~~~L~~~lA~l~g~~~-~v~~~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~  115 (376)
T PRK06460         37 YRYSREANPTVLELTKKIVELENAEM-GVAFSSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDAS  115 (376)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEE
Confidence            44666666778899999999999954 56663222222222                         23344556665555


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV  295 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~  295 (603)
                      +.+      +.+.+++.+.      ++++||.+...+|.||.++|++.| ++|+++|++|++|.++..+....++   ..
T Consensus       116 ~~~------~~~~l~~~~~------~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~~~l---~~  180 (376)
T PRK06460        116 NPG------SDNIIEKAKS------KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQKPL---EL  180 (376)
T ss_pred             CCC------CHHHHHHhcC------CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccCChh---hc
Confidence            432      1233433332      368999999999999999999966 5899999999999998766422222   34


Q ss_pred             CCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          296 RPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      ++|+++.|++|+||+ +.|  .|+++.+++.+
T Consensus       181 ~~divv~S~sK~l~G-~~~~~~G~~~~~~~l~  211 (376)
T PRK06460        181 GADIVVHSASKFLAG-HNDVIAGLAAGYGKLL  211 (376)
T ss_pred             CCCEEEeecceeccC-CCCceEEEEecCHHHH
Confidence            689999999999984 433  67666555543

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.31  E-value=2.4e-09  Score=116.15  Aligned_cols=215  Identities=10%  Similarity=0.102  Sum_probs=138.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC----CCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS----FGLSLV  295 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~----ldls~~  295 (603)
                      |.++|++.|..      ++++|.+....|.+|.++|    ++.+ ++|+++|+++++|.++. ++.  ..    .+....
T Consensus       176 d~~~le~~i~~------~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~--~g~~~~~~~~g~  247 (401)
T PRK00854        176 DAEALEAAITP------NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGR--TGKLLAEEHEGI  247 (401)
T ss_pred             CHHHHHHHhCC------CeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCC--CchHhHHhhcCC
Confidence            67888888853      5899999999999999998    7755 48999999999999987 443  12    112234


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      .+|++++|  |++++.---+|++..++++++.+.+...+.+                                  -+.++
T Consensus       248 ~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t----------------------------------~~~~~  291 (401)
T PRK00854        248 EADVTLIG--KALSGGFYPVSAVLSNSEVLGVLKPGQHGST----------------------------------FGGNP  291 (401)
T ss_pred             CCCEEEec--ccccCCccCeEEEEEcHHHHhcccCCCCCCC----------------------------------CCcCH
Confidence            68999987  9876310127888888887655542110000                                  01111


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      +...+++                                         ++|+.+.+.   .+.++.+.+.+++.+.|.++
T Consensus       292 ~~~aa~~-----------------------------------------a~L~~l~~~---~~~~~~~~~~~~l~~~L~~~  327 (401)
T PRK00854        292 LACAVAR-----------------------------------------AALKVLTEE---GMIENAAEMGAYFLEGLRSI  327 (401)
T ss_pred             HHHHHHH-----------------------------------------HHHHHHHHc---CHHHHHHHHHHHHHHHHHhh
Confidence            1111111                                         466665542   34577888899999999876


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      ..      +.+.  ..   ...|.++.|.+.+...  -...+++.|. ++||.++..                       
T Consensus       328 ~~------~~~~--~~---~g~g~~~~i~~~~~~~--~~~~~~~~L~-~~GV~v~~~-----------------------  370 (401)
T PRK00854        328 RS------NIVR--EV---RGRGLMLAVELEPEAG--GARQYCEALK-ERGLLAKDT-----------------------  370 (401)
T ss_pred             cc------CceE--EE---eccceEEEEEEecCch--hHHHHHHHHH-HCCeEEecC-----------------------
Confidence            32      1111  01   1357778777644211  1123344454 468887410                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                       +.+.||+++++..|.+||+++++.|++++.
T Consensus       371 -----------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        371 -----------------HDHTIRLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             -----------------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence                             125899999999999999999999998764

>PRK08912 hypothetical protein; Provisional

Probab=99.30  E-value=3.7e-10  Score=121.98  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=85.1

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEe
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILID  278 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvD  278 (603)
                      ...++..|+++..++++..+..++.++|++.+..      ++++++++..+|.||.++|.+.    ++.|+++++++++|
T Consensus       125 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~D  198 (387)
T PRK08912        125 LPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFSP------RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICD  198 (387)
T ss_pred             HHHHHHcCCEEEEEecCcccCcCCHHHHHHHhCc------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEh
Confidence            3456778999999988644567899999998753      5788889999999999999653    35689999999999


Q ss_pred             cccc----CCCCCCCC-CCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          279 ACAL----GPKDMDSF-GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       279 Aaq~----~~~~m~~l-dls~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      .+..    .+....++ .+.. ...++++.|+.|.||  ..|  +|++++.+++++.+
T Consensus       199 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~~~~l  254 (387)
T PRK08912        199 EVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFS--LTGWKVGFVCAAPPLLRVL  254 (387)
T ss_pred             hhhhhcccCCCCCcChhhCCCccCceEEEeechhhcc--CcCceeEEEecCHHHHHHH
Confidence            8642    11100121 1211 245799999999999  448  89999876655433

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.30  E-value=1.7e-09  Score=118.80  Aligned_cols=104  Identities=12%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ..+++.|+++.+++..      +.+++++.|..      +|++|.+.+.+|.||.+.|++.| ++|+++|+++++|.++.
T Consensus       121 ~~~~~~G~~v~~vd~~------d~~~l~~ai~~------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a  188 (427)
T PRK05994        121 HAFKSFGWQVRWADAD------DPASFERAITP------RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLA  188 (427)
T ss_pred             HHHHhcCcEEEEECCC------CHHHHHHhcCc------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcc
Confidence            3355678877777642      57888888853      68999999999999999999855 58999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCc-eEEEEEeCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSG-FGCLFVKKS  323 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~L~vkk~  323 (603)
                      .|....++   .+++|+++.|+||++|+ |.| +|++++...
T Consensus       189 ~~~~~~pl---~~gaDivv~S~tK~lgg-~~~~~gG~v~~~~  226 (427)
T PRK05994        189 SPYLIRPI---EHGADIVVHSLTKFLGG-HGNSMGGIIVDGG  226 (427)
T ss_pred             ccccCCcc---ccCCcEEEEcCccccCC-CCCcEEEEEEeCC
Confidence            88632233   47999999999999995 444 888888543

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.30  E-value=1.6e-09  Score=117.61  Aligned_cols=213  Identities=13%  Similarity=0.199  Sum_probs=136.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~  297 (603)
                      +.++|++.+..      ++++|.+...+|.+|.+.|    ++.+ ++|+++|+.+++|-++. .+..  +..++.....|
T Consensus       175 d~~~l~~~i~~------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~p  248 (396)
T PRK04073        175 DLEALKAAITP------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTP  248 (396)
T ss_pred             CHHHHHHhccc------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCC
Confidence            56778777752      5899999999999999988    5545 47999999999999876 3321  11234445579


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |++++|  |.+|...--+|+++.++++++.+.....+.                                  .-+..++.
T Consensus       249 di~~~s--K~lg~gg~~ig~~~~~~~i~~~~~~~~~~~----------------------------------t~~~~~~~  292 (396)
T PRK04073        249 DMYILG--KALGGGVFPISCVAANRDILGVFTPGSHGS----------------------------------TFGGNPLA  292 (396)
T ss_pred             CEEEec--ccccCCCCcceEEEEcHHHHhhhcCCCCCC----------------------------------CCCCCHHH
Confidence            998875  988741012899999887765543211000                                  00111122


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..+++                                         ++|+.+++-   .+.++.+.+.++|.+.|.++.+
T Consensus       293 ~aaa~-----------------------------------------aaL~~~~~~---~l~~~~~~~~~~l~~~L~~l~~  328 (396)
T PRK04073        293 CAVSI-----------------------------------------AALEVLEEE---KLPERSLELGEYFKEQLKEIDN  328 (396)
T ss_pred             HHHHH-----------------------------------------HHHHHHHhc---CHHHHHHHHHHHHHHHHHhhcC
Confidence            11111                                         466665442   3456778889999999988742


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                            +.+   ++.  ..+|..+.+.+.+ +    ...+.++| .++||.++..                         
T Consensus       329 ------~~i---~~~--~~~g~~~~~~~~~-~----~~~~~~~l-~~~Gv~~~~~-------------------------  366 (396)
T PRK04073        329 ------PMI---KEV--RGRGLFIGVELNE-P----ARPYCEAL-KEEGLLCKET-------------------------  366 (396)
T ss_pred             ------Ccc---cce--ecceEEEEEEecc-h----HHHHHHHH-HHCCeEEecC-------------------------
Confidence                  222   111  1246777777653 1    12334444 4568876410                         


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                     +.++||+++.+..|.|||+++++.|++++
T Consensus       367 ---------------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        367 ---------------HETVIRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             ---------------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence                           11489999999999999999999998875

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.29  E-value=5.2e-10  Score=121.29  Aligned_cols=99  Identities=17%  Similarity=0.141  Sum_probs=74.3

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD  286 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~  286 (603)
                      +.|+++..++.      .+.++++++|.+      +|++|.+...+|.||.++|++.| ++|+++|++|++|.++..|.-
T Consensus       115 ~~gi~v~~vd~------~d~e~l~~~i~~------~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~  182 (388)
T PRK08861        115 KGDFKVQFVDQ------SDAAALDAALAK------KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVL  182 (388)
T ss_pred             cCCeEEEEECC------CCHHHHHHhcCc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccc
Confidence            34555555532      357788887753      68999999999999999999965 589999999999999887641


Q ss_pred             CCCCCCCCCCCcEEEEcccccCCCCCCc-eEE-EEEeC
Q 007454          287 MDSFGLSLVRPDFLICSFYQIFGENPSG-FGC-LFVKK  322 (603)
Q Consensus       287 m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~-L~vkk  322 (603)
                      -.+++   +++|+++.|+||++|+ |.+ +|. +..++
T Consensus       183 ~~pl~---~GaDivv~S~tK~l~G-~~d~~gG~i~~~~  216 (388)
T PRK08861        183 QKPLE---LGADFVIHSTTKYING-HSDVIGGVLITKT  216 (388)
T ss_pred             CCCcc---cCCCEEEeecceeccC-CCcceeEEEEecH
Confidence            13443   5899999999999987 554 344 44443

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.29  E-value=1.1e-10  Score=126.59  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC-------------------ccccCHHHHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP-------------------RLRINSEKLRKM  233 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~-------------------~g~i~~~~L~~~  233 (603)
                      ++.+++|++++|.. +.++|..-..++..++....+.|.+|......+.                   ....+.++++++
T Consensus        64 ~~Le~~lA~l~G~~-~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~l~~~  142 (386)
T PRK06767         64 KLFEERMAVLEGGE-EALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEADIENK  142 (386)
T ss_pred             HHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHHHHHh
Confidence            46788889999863 4555543332333222222233444433221000                   001256778777


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      +.+      +|+||.+...+|.||.+.|++.| ++|+++|+.|++|.++..+.  ...++ ..++|+++.|++|++|+ +
T Consensus       143 i~~------~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~--~~~pl-~~g~Div~~S~sK~l~g-~  212 (386)
T PRK06767        143 IRP------NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPY--LQRPL-ELGCDAVVHSATKYIGG-H  212 (386)
T ss_pred             hCc------CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hcCCcEEEecCcceecC-C
Confidence            753      68999999999999999999866 58999999999999987664  23333 35899999999999985 4


Q ss_pred             Cc--eEEEEEeCCCCc
Q 007454          313 SG--FGCLFVKKSTVP  326 (603)
Q Consensus       313 ~G--~G~L~vkk~~~~  326 (603)
                      .+  .|+++.+++.+.
T Consensus       213 g~~~gG~v~~~~~~i~  228 (386)
T PRK06767        213 GDVVAGVTICKTRALA  228 (386)
T ss_pred             CCceeEEEEeChHHHH
Confidence            33  578887776543

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.28  E-value=1e-09  Score=119.71  Aligned_cols=135  Identities=10%  Similarity=0.116  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHH-------------------------HHHHcCCEEEEEeccCCcccc
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYESEAVEAMIR-------------------------TSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~-------------------------~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ..++.+++|+++.|+ ++.+++...+.++..++.                         .+++.|.++..++.      .
T Consensus        61 ~~~~Le~~lA~l~g~-~~~v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~------~  133 (405)
T PRK08776         61 TRDLLGEALAELEGG-AGGVITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL------T  133 (405)
T ss_pred             HHHHHHHHHHHHhCC-CceEEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC------C
Confidence            345677888888887 345555433333322222                         23334444444432      2


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|++.+..      +|+|+.+...+|.||.+.|++.| ++|+++|+.+++|.++..|....++   .+++|++++|+
T Consensus       134 d~~~l~~~i~~------~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl---~~gaDivv~S~  204 (405)
T PRK08776        134 DPRSLADALAQ------SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL---EFGADLVLHST  204 (405)
T ss_pred             CHHHHHHhcCc------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc---cccCCEEEecC
Confidence            57788877752      68999999999999999999866 5899999999999998776421244   36899999999


Q ss_pred             cccCCCCCCc--eEEEEEeC
Q 007454          305 YQIFGENPSG--FGCLFVKK  322 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk  322 (603)
                      ||+||+ |.+  .|++++++
T Consensus       205 tK~l~g-~~~~~~G~vv~~~  223 (405)
T PRK08776        205 TKYING-HSDVVGGAVVARD  223 (405)
T ss_pred             ceeecC-CCCceEEEEEeCC
Confidence            999985 655  46665543

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.28  E-value=3.7e-10  Score=120.55  Aligned_cols=147  Identities=12%  Similarity=0.165  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      ..+.|+.|++++++++++++++.... ++                     ......+...|+++..++++  ++.++.++
T Consensus        66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~d~~~  143 (359)
T PRK03158         66 APELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK--DGGHDLEA  143 (359)
T ss_pred             HHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC--CCCcCHHH
Confidence            35799999999999999998764321 11                     11223455678899988875  56788999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEecccc----CCCCCCCCC-CCCCCCcEEE
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACAL----GPKDMDSFG-LSLVRPDFLI  301 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~----~~~~m~~ld-ls~~~~Dflv  301 (603)
                      |++.+..      +++++.++..+|.||.++|.+.+ ++++.  +|+++++|-+..    .+.....+. +...+..+++
T Consensus       144 l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~  217 (359)
T PRK03158        144 MLKAIDE------QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVL  217 (359)
T ss_pred             HHHhcCC------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEE
Confidence            9887753      57888888999999999999854 45654  589999998742    111000111 1223456888


Q ss_pred             EcccccCCCCCCce--EEEEEeCCCCcCc
Q 007454          302 CSFYQIFGENPSGF--GCLFVKKSTVPIL  328 (603)
Q Consensus       302 ~S~hK~fG~~P~G~--G~L~vkk~~~~~L  328 (603)
                      .|+-|.||  ..|+  |.++..++.++.+
T Consensus       218 ~S~SK~~g--~~GlRiG~~v~~~~~~~~~  244 (359)
T PRK03158        218 RTFSKAYG--LAALRVGYGIASEELIEKL  244 (359)
T ss_pred             EechHhhc--CcchhhehhcCCHHHHHHH
Confidence            89999999  5585  9888766654433

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.28  E-value=2e-10  Score=125.15  Aligned_cols=141  Identities=11%  Similarity=0.109  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEeccCchHH-------------------------HHHHHHHHcCCEEEEEeccCCcccc
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYESEAVE-------------------------AMIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~es~sV~-------------------------~~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ..++.++++++++|+++ .+++..-..++.                         .....++..|+++..++.+      
T Consensus        66 ~~~~le~~lA~l~g~~~-~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~------  138 (403)
T PRK07503         66 TLALLEQRMASLEGGEA-AVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT------  138 (403)
T ss_pred             hHHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC------
Confidence            34577888888888854 354432111111                         1223344567777666542      


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|+++|..      +|++|.+...+|.||.+.|++.| ++|+++|+.+++|.++..+....++   .+++|++++|+
T Consensus       139 d~~~l~~~i~~------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l---~~g~Di~v~S~  209 (403)
T PRK07503        139 DPAALKAAISD------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL---ELGADLVVHSA  209 (403)
T ss_pred             CHHHHHHhcCc------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCCCEEEccc
Confidence            57888888753      68999999999999999999855 5899999999999998766421233   35899999999


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      +|++|+ |.+  .|+++.+++..+.+
T Consensus       210 tK~l~g-~gd~~gG~v~~~~~l~~~l  234 (403)
T PRK07503        210 TKYLGG-HGDITAGLVVGGKALADRI  234 (403)
T ss_pred             cccccC-CCceeEEEEEcCHHHHHHH
Confidence            999994 433  67777655544333

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.27  E-value=2.4e-09  Score=117.77  Aligned_cols=105  Identities=17%  Similarity=0.182  Sum_probs=84.3

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa  280 (603)
                      +...+++.|++|+.++..      +.++|+++|..      ++++|.+.+.+|.||.++|++.| ++|+++|+.|++|++
T Consensus       120 ~~~~~~~~Gv~v~~vd~~------d~e~l~~ai~~------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t  187 (431)
T PRK08248        120 FAHTLPKLGITVKFVDPS------DPENFEAAITD------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT  187 (431)
T ss_pred             HHHHHHhCCEEEEEECCC------CHHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence            344566788888888652      67888888863      68999999999999999999855 589999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          281 ALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       281 q~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                      +..|..  ..++ ++++|+++.|+||++|+ | |  +|.+++.+.
T Consensus       188 ~a~~~~--~~pl-~~gaDivv~S~tK~lgg-~-g~~~Gg~v~~~~  227 (431)
T PRK08248        188 FASPYL--LRPI-EHGADIVVHSATKFIGG-H-GTSIGGVIVDSG  227 (431)
T ss_pred             CCcccc--CChh-HcCCCEEEEcCccccCC-C-CCceEEEEEeCC
Confidence            887752  3334 57999999999999995 4 5  898888654

>PRK07505 hypothetical protein; Provisional

Probab=99.27  E-value=2.2e-09  Score=116.74  Aligned_cols=183  Identities=12%  Similarity=0.145  Sum_probs=106.7

Q ss_pred             CCceeeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~tl~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      ++..|||.++.+.+    .+.+++++.+.+...                    ++.++....+....+..++.+++|+++
T Consensus        44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~--------------------g~~~~~~~~~~~~~~~~~~l~~~la~~  103 (402)
T PRK07505         44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRT--------------------GSLHLSSSRTRVRSQILKDLEEALSEL  103 (402)
T ss_pred             CCceEEEeecCCccCCCCCHHHHHHHHHHHHHh--------------------CCCCCCccchhhhhHHHHHHHHHHHHH
Confidence            57789999887766    678888877643211                    111100001112356788999999999


Q ss_pred             cCCCCCcEEEeccCchHHHHHHHHHH---c-CC-EEEEEec----------cCC--cc------ccCHHHHHHHHhhcCC
Q 007454          183 LNISENDYVYDYESEAVEAMIRTSEK---R-GA-RVMSAEF----------SWP--RL------RINSEKLRKMVVSKGK  239 (603)
Q Consensus       183 lna~~~e~vf~~es~sV~~~~~~a~~---~-Ga-~V~~~~~----------~~~--~g------~i~~~~L~~~l~~~~~  239 (603)
                      ++.  +.++|...++++...+..+.+   . |- +|....-          .+.  ..      -.|.++|++++..   
T Consensus       104 ~~~--~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~d~~~l~~~~~~---  178 (402)
T PRK07505        104 FGA--SVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHNDLDALEDICKT---  178 (402)
T ss_pred             hCC--CEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCCCHHHHHHHHhc---
Confidence            987  666666544444433433221   0 11 1222210          000  00      0267888888753   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC---C-CC-CC---CCCCCCCCCcEEEEcccccCCC
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG---P-KD-MD---SFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~---~-~~-m~---~ldls~~~~Dflv~S~hK~fG~  310 (603)
                         +++++++..-.|.||.+.|++.+ ++|+++|+++++|.++..   + .. +.   .+++......+++.|+=|.||.
T Consensus       179 ---~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~  255 (402)
T PRK07505        179 ---NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGA  255 (402)
T ss_pred             ---CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhc
Confidence               35667777677899999999866 489999999999999742   1 10 00   1221111224666789999983


Q ss_pred             CCCceEEEEE
Q 007454          311 NPSGFGCLFV  320 (603)
Q Consensus       311 ~P~G~G~L~v  320 (603)
                        .| |.+.+
T Consensus       256 --~G-g~~~~  262 (402)
T PRK07505        256 --SG-GVIML  262 (402)
T ss_pred             --cC-eEEEe
Confidence              34 65544

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.27  E-value=5.7e-10  Score=121.06  Aligned_cols=143  Identities=10%  Similarity=0.139  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCCc------------c-------ccCHHHH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPR------------L-------RINSEKL  230 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~------------g-------~i~~~~L  230 (603)
                      ....+.+++|+++.|++.. ++|..-..++..+....-+.|.+|......+..            +       ..+.++|
T Consensus        61 p~~~~Le~~lA~~~g~~~~-i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l  139 (388)
T PRK07811         61 PTRTALEEQLAALEGGAYG-RAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLDAV  139 (388)
T ss_pred             ccHHHHHHHHHHHhCCCce-EEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHHHH
Confidence            3456889999999998643 444322223333333333344444433211110            0       1367888


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCC
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFG  309 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG  309 (603)
                      ++.|..      +|++|.+...+|.||.+.|++.| ++|+++|+++++|.++..+....++   .+++|++++|++|++|
T Consensus       140 ~~~i~~------~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~---~~gaDivv~S~sK~l~  210 (388)
T PRK07811        140 RAAITP------RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL---ALGADVVVHSTTKYIG  210 (388)
T ss_pred             HHhcCc------CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch---hhCCcEEEecCceeec
Confidence            888753      68999999999999999999965 5899999999999998776421233   3589999999999998


Q ss_pred             CCCCc--eEEEEEeCC
Q 007454          310 ENPSG--FGCLFVKKS  323 (603)
Q Consensus       310 ~~P~G--~G~L~vkk~  323 (603)
                      + |.+  .|++++++.
T Consensus       211 g-~~~~~gG~vv~~~~  225 (388)
T PRK07811        211 G-HSDVVGGALVTNDE  225 (388)
T ss_pred             C-CCCcEEEEEEECCH
Confidence            5 655  477777643

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.26  E-value=6.9e-10  Score=120.80  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=92.8

Q ss_pred             ccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHH-------------------------HHHHHHcCCEEEEEec
Q 007454          164 HGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAM-------------------------IRTSEKRGARVMSAEF  218 (603)
Q Consensus       164 ~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~-------------------------~~~a~~~Ga~V~~~~~  218 (603)
                      |+.......++.+++|++++|++ ..++|.....++..+                         ...+++.|+++..++.
T Consensus        58 y~r~~~p~~~~le~~lA~l~g~~-~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~  136 (398)
T PRK08249         58 YSRNTNPTVQAFEEKVRILEGAE-AATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET  136 (398)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence            44444556678999999999974 345553222222111                         1234456766665542


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                            .+.++++++|.+      +|++|.+...+|.||.+.|++.| ++|+++|+.+++|.++..+..-.++   .+++
T Consensus       137 ------~d~e~l~~~i~~------~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l---~~~~  201 (398)
T PRK08249        137 ------GDHEQIEAEIAK------GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQNPL---ALGA  201 (398)
T ss_pred             ------CCHHHHHHhcCC------CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCCch---hhCC
Confidence                  367888888853      68999999999999999999855 5899999999999998766421122   3689


Q ss_pred             cEEEEcccccCCC
Q 007454          298 DFLICSFYQIFGE  310 (603)
Q Consensus       298 Dflv~S~hK~fG~  310 (603)
                      |+++.|++|++|+
T Consensus       202 Divv~S~sK~l~g  214 (398)
T PRK08249        202 DLVIHSATKFLSG  214 (398)
T ss_pred             CEEeccCceecCC
Confidence            9999999999984

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.26  E-value=6.3e-10  Score=120.64  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=68.8

Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                      .+.+++++++..      +|+++.+...+|.||.+.|++.| ++|+++|++|++|.++..|....++   .+++|+++.|
T Consensus       125 ~d~e~l~~~l~~------~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~pl---~~gaDivv~S  195 (386)
T PRK08045        125 GDEQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNPL---ALGADLVLHS  195 (386)
T ss_pred             CCHHHHHHhccc------CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCch---hhCCCEEEee
Confidence            367788887753      68999999999999999999855 5899999999999998877521233   4589999999


Q ss_pred             ccccCCCCCCc--eEEEEEe
Q 007454          304 FYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vk  321 (603)
                      ++|++|+ |.+  .|+++.+
T Consensus       196 ~tK~l~G-~~d~~~G~vi~~  214 (386)
T PRK08045        196 CTKYLNG-HSDVVAGVVIAK  214 (386)
T ss_pred             cceeccC-CCCceeEEEEeC
Confidence            9999986 555  4555443

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.25  E-value=7.9e-10  Score=120.07  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=78.3

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      +...|+++.+++++      +.+++++.|..      +|++|.+...+|.+|.+.|++.| ++|+++|+++++|.++..|
T Consensus       119 ~~~~G~~~~~vd~~------d~e~l~~~i~~------~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~  186 (391)
T TIGR01328       119 LTKFGIQVDFINMA------IPEEVKAHIKD------NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATP  186 (391)
T ss_pred             HhcCCeEEEEECCC------CHHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchh
Confidence            34556666666543      57788887753      68999999999999999999855 5899999999999998766


Q ss_pred             CCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      .  ..-.+ ..++|++++|++|+||+ |.+  .|+++.+++.++
T Consensus       187 ~--~~~~~-~~g~Divv~S~sK~lgg-~g~~~gG~v~~~~~li~  226 (391)
T TIGR01328       187 M--LTNPV-ALGVDVVVHSATKYIGG-HGDVVAGLICGKAELLQ  226 (391)
T ss_pred             c--cCCch-hcCCCEEEccccccccC-CCCceEEEEEcCHHHHH
Confidence            4  12222 35899999999999985 433  466666665443

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK05939 hypothetical protein; Provisional

Probab=99.25  E-value=1e-09  Score=119.36  Aligned_cols=104  Identities=11%  Similarity=0.111  Sum_probs=82.4

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ..+++.|+++..++..      +.++|+++|.+      +|++|.+.+.+|.||.+.|++.| ++||++|+++++|+++.
T Consensus       104 ~~l~~~G~~v~~v~~~------d~e~l~~~l~~------~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a  171 (397)
T PRK05939        104 GTLRGLGVEVTMVDAT------DVQNVAAAIRP------NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMT  171 (397)
T ss_pred             HHHHhcCCEEEEECCC------CHHHHHHhCCC------CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcc
Confidence            4456778888887652      67888888853      68999999999999999999855 58999999999999998


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      .|.   .++...+++|+++.|++|+||++-..+|..++.+
T Consensus       172 ~~~---~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~  208 (397)
T PRK05939        172 SPW---LFRPKDVGASLVINSLSKYIAGHGNALGGAVTDT  208 (397)
T ss_pred             ccc---ccCccccCCEEEEecCeecccCCCCeEEEEEecC
Confidence            875   4666667899999999999985211246665543

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.24  E-value=1e-09  Score=119.14  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHcC------CCC-CcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCC-c
Q 007454          173 SAMKKRIMDFLN------ISE-NDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWP-R  222 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~-~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~  222 (603)
                      .+.|+.|+++++      +++ ++++.+..+. +                     -.+....++..|+++..++++.. .
T Consensus        72 ~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~  151 (399)
T PRK07681         72 QEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKEND  151 (399)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCC
Confidence            368888888875      577 6786653321 1                     11223445677999999988632 2


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc----CCCCCCC-CCCC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL----GPKDMDS-FGLS  293 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~----~~~~m~~-ldls  293 (603)
                      ..++.++|++.+..      +++++.+..-+|.||.++|.+    ++++|+++|++|++|-+..    .++...+ +.+.
T Consensus       152 ~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~  225 (399)
T PRK07681        152 FLPDLELIPEEIAD------KAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVP  225 (399)
T ss_pred             CcCCHHHHHHhccc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCC
Confidence            35788999887753      578888887799999999964    2346899999999998743    1221001 1111


Q ss_pred             -CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          294 -LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       294 -~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                       .....+++-|+.|.||  ..|  +|.++..+++++.+
T Consensus       226 ~~~~~~i~~~S~SK~~~--~~GlRiG~~i~~~~l~~~~  261 (399)
T PRK07681        226 GAKEVGVEINSLSKSYS--LAGSRIGYMIGNEEIVRAL  261 (399)
T ss_pred             CCcccEEEEeecccccC--CccceeEEEecCHHHHHHH
Confidence             1123577889999999  447  89998766654333

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.24  E-value=8e-10  Score=119.80  Aligned_cols=135  Identities=13%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHH------------------------HHHHHHcCCEEEEEeccCCcccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAM------------------------IRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~------------------------~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ...++.+++|++++|++ +-++|..-..++..+                        .+.+++.|+++..+.       +
T Consensus        53 p~~~~lE~~lA~l~g~~-~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~-------~  124 (385)
T PRK08574         53 PTLRPLEEALAKLEGGV-DALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY-------P  124 (385)
T ss_pred             ccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC-------C
Confidence            34567888999999863 334443211222221                        222234455555442       2


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|+++|..     .+|++|.+...+|.||.++|++.| ++|+++|++|++|.++..|....++   .+++|++++|+
T Consensus       125 d~~~l~~~i~~-----~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l---~~GaDivv~S~  196 (385)
T PRK08574        125 STEDIIEAIKE-----GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL---RHGADFVVHSL  196 (385)
T ss_pred             CHHHHHHhcCc-----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh---hhCCcEEEeeC
Confidence            46778887752     258999999999999999999955 6899999999999998877521233   46899999999


Q ss_pred             cccCCCCCCc-e-EEEEEe
Q 007454          305 YQIFGENPSG-F-GCLFVK  321 (603)
Q Consensus       305 hK~fG~~P~G-~-G~L~vk  321 (603)
                      +|++|+ |.+ + |+++.+
T Consensus       197 sK~l~g-~~d~~gG~vi~~  214 (385)
T PRK08574        197 TKYIAG-HNDVVGGVAVAW  214 (385)
T ss_pred             ceeecC-CCCceeEEEEEC
Confidence            999985 544 3 445554

>PLN02509 cystathionine beta-lyase

Probab=99.24  E-value=6.1e-10  Score=123.14  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=81.9

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ....+.|+++..++.      .+.++|+++|.      ++|+++.+...+|.+|.+.|++.| ++|+++|+.|++|.++.
T Consensus       190 ~~l~~~G~~v~~vd~------~d~e~l~~ai~------~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a  257 (464)
T PLN02509        190 QVVPRSGVVVKRVNT------TNLDEVAAAIG------PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIM  257 (464)
T ss_pred             HHHHHCCeEEEEeCC------CCHHHHHHhCC------cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence            344567888877653      25678888875      368999999999999999999965 58999999999999988


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKST  324 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~  324 (603)
                      .|..  ...+ .+++|++++|++|++++ |.+  .|+++++++.
T Consensus       258 ~~~~--~~pl-~~gaDivv~S~tK~l~G-~gdv~gG~v~~~~~~  297 (464)
T PLN02509        258 SPVL--SRPL-ELGADIVMHSATKFIAG-HSDVMAGVLAVKGEK  297 (464)
T ss_pred             cccc--CChh-hcCCcEEEecCcccccC-CCccceeEEEeccHH
Confidence            8752  2222 36899999999999986 666  6777776543

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.24  E-value=1.1e-09  Score=118.18  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEE
Q 007454          199 VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILI  277 (603)
Q Consensus       199 V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlv  277 (603)
                      +..+.+.+.--|..++.++.+ ++++++.++|+++|..........-+|+.++-+-.||.+=|++.|. +|++++.++||
T Consensus       151 H~S~~Kaa~~lGlg~~~I~~~-~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHV  229 (373)
T PF00282_consen  151 HYSIEKAARILGLGVRKIPTD-EDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHV  229 (373)
T ss_dssp             -THHHHHHHHTTSEEEEE-BB-TTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEE
T ss_pred             ccHHHHhcceeeeEEEEecCC-cchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeee
Confidence            334455666678889999998 5899999999999875322122344788899999999999999664 89999999999


Q ss_pred             eccccCC----CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          278 DACALGP----KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       278 DAaq~~~----~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      |||-.+.    ..+..++...-++|-+++++|||++. |.+.|++++|+..
T Consensus       230 DaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~-P~~~~~~l~r~~~  279 (373)
T PF00282_consen  230 DAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGV-PYGCGVLLVRDKS  279 (373)
T ss_dssp             EETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS--SSS-EEEEESSGG
T ss_pred             cccccccccccccccccccccccccccccchhhhhcC-CccceeEEeeccc
Confidence            9964441    11123333345799999999999997 9999999999864

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.23  E-value=6e-10  Score=120.95  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=74.2

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG  283 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~  283 (603)
                      ..++.|.++..++..      +.+.|++.|.      ++|+||.+...+|.||.+.|++.| ++||++|+++++|.++..
T Consensus       120 ~l~~~Gi~v~~v~~~------~~e~l~~~l~------~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~  187 (394)
T PRK09028        120 ILKGFGIETTYYDPM------IGEGIRELIR------PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWAS  187 (394)
T ss_pred             hhhhcceEEEEECCC------CHHHHHHhcC------cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccc
Confidence            445678888876542      3567888775      369999999999999999999955 689999999999999988


Q ss_pred             CCCCCCCCCCCCCCcEEEEcccccCCC
Q 007454          284 PKDMDSFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       284 ~~~m~~ldls~~~~Dflv~S~hK~fG~  310 (603)
                      |....|+   .+++|+++.|.|||+++
T Consensus       188 p~~~~Pl---~~GaDivv~S~tK~l~G  211 (394)
T PRK09028        188 PINSRPF---EMGVDISIQAATKYIVG  211 (394)
T ss_pred             cccCCcc---ccCceEEEEeCCeEecC
Confidence            8522344   57999999999999976

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.23  E-value=3e-09  Score=124.80  Aligned_cols=222  Identities=17%  Similarity=0.077  Sum_probs=143.1

Q ss_pred             EEEeC-ccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc-----CCCCCCceEEEE
Q 007454          247 FVFPL-HSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI-----FGENPSGFGCLF  319 (603)
Q Consensus       247 v~~~~-~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~-----fG~~P~G~G~L~  319 (603)
                      +++.. ..|..|.+.++..+ +++|++|++++++|-.+...  ....-.++++|+++.+.++|     ||+ | +.|++.
T Consensus       196 ~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al~--ll~~Pge~GaDi~vg~~q~fg~p~g~GG-P-~aG~~a  271 (939)
T TIGR00461       196 FGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMALT--LLTPPGHYGADIVLGSSQRFGVPMGYGG-P-HAAFFA  271 (939)
T ss_pred             EEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHhC--CcCCHHHcCCcEEeeCCCccCCCCCCCC-C-ceeeee
Confidence            44444 44999999999855 68999999999987554443  34555678999998888886     566 5 699999


Q ss_pred             EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      +|+.....|....+|=+++ ....+.+-.       .+++.+ .+-+  .|-+|.|+-..-+|-             ++.
T Consensus       272 ~~~~l~r~lPgrivG~s~D-~~G~~~~~l-------~LqtRe-qhIr--RekAtSNICt~qaL~-------------a~~  327 (939)
T TIGR00461       272 VKDEYNRKMPGRIVGVSKD-ALGNTALRL-------ALQTRE-QHIR--RDKATSNICTAQVLL-------------ANV  327 (939)
T ss_pred             ecHhhHhhCCCCceeEEec-CCCCcccee-------eccccc-cccc--ccccCcchhHHHHHH-------------HHH
Confidence            9998877776655541211 110000000       011110 1222  478998887654442             221


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRG--LDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~a--ld~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                              ++  +.++-..||.+|.+|+..++.+|.++|.+.      |   +++..+    .-
T Consensus       328 ------------------------a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~------G---~~~~~~----~f  370 (939)
T TIGR00461       328 ------------------------ASSYCVYHGPKGLKNIARRIHSLTSILANGLEND------P---HELINK----TW  370 (939)
T ss_pred             ------------------------HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC------C---CcccCC----Cc
Confidence                                    23  233334479999999999999999999874      3   344333    12


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      -.++.+.+.+.     +.+.+.+.+.++||.+|..                                        ..+.|
T Consensus       371 F~~~~v~~~~~-----~~~~i~~~~~~~gi~l~~~----------------------------------------~~~~i  405 (939)
T TIGR00461       371 FDTLTVKVGNG-----ISSELLKAAEEFNINLRAV----------------------------------------DTTTV  405 (939)
T ss_pred             cceEEEEeCCC-----CHHHHHHHHHHCCCeeeec----------------------------------------CCCEE
Confidence            34666666321     2333444445679987631                                        01489


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q 007454          558 TASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~  578 (603)
                      ++|+.-++|.+||+.|++.+.
T Consensus       406 ~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       406 GIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             EEEeecCCCHHHHHHHHHHhc
Confidence            999999999999999999985

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.23  E-value=8.4e-10  Score=116.84  Aligned_cols=144  Identities=13%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHHHHHHHHHHcCCEEEEEeccCCc---------ccc----CHHHHHHHHhhcC
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVEAMIRTSEKRGARVMSAEFSWPR---------LRI----NSEKLRKMVVSKG  238 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~~~~~~a~~~Ga~V~~~~~~~~~---------g~i----~~~~L~~~l~~~~  238 (603)
                      .+.|+.|++++|+++++++++..+. ++..+... -..| +|......+..         .++    +.++|++.+.   
T Consensus        50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~d~~~l~~~~~---  124 (330)
T TIGR01140        50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELPDLDRLPAALE---  124 (330)
T ss_pred             HHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeCCHHHHHhhcc---
Confidence            6899999999999999998876543 22222222 1234 44333221110         000    5777877763   


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc--CCCCCCC-CCC-CCCCCcEEEEcccccCCC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL--GPKDMDS-FGL-SLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~--~~~~m~~-ldl-s~~~~Dflv~S~hK~fG~  310 (603)
                          +++++.+...+|.||.++|.+.+    ..|+++|++|++|.+..  .+.  .+ .++ ...+-++++.|+.|.||.
T Consensus       125 ----~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~g~  198 (330)
T TIGR01140       125 ----ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD--ASLAPQAARFPGLVVLRSLTKFFGL  198 (330)
T ss_pred             ----cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc--cchhhHhccCCCEEEEEecchhhcC
Confidence                35688888889999999997633    35788999999999853  322  11 111 123456899999999994


Q ss_pred             CCCc--eEEEEEeCCCCcCcC
Q 007454          311 NPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       311 ~P~G--~G~L~vkk~~~~~L~  329 (603)
                        .|  +|.++++++.++.+.
T Consensus       199 --~G~R~G~i~~~~~~~~~l~  217 (330)
T TIGR01140       199 --AGLRLGFVVAHPALLARLR  217 (330)
T ss_pred             --chhhhhheeCCHHHHHHHH
Confidence              36  599998877654443

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.23  E-value=6e-09  Score=114.42  Aligned_cols=88  Identities=11%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|++.|.+      ++++|.+...+|.||.+.|++.| ++|+++|++|++|.++..|..   .+.-.+++|+++.|+
T Consensus       132 d~e~le~ai~~------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~---~~p~~~gaDivv~S~  202 (425)
T PRK06084        132 DIAALEALIDE------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL---CRPFEHGADIVVHSL  202 (425)
T ss_pred             CHHHHHHHhcc------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc---CChhhcCCCEEEECc
Confidence            67888888863      68899999999999999999865 589999999999999987752   222256899999999


Q ss_pred             cccCCCCCCceEEEEEeC
Q 007454          305 YQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       305 hK~fG~~P~G~G~L~vkk  322 (603)
                      +|++|++-..+|..++.+
T Consensus       203 tK~l~G~g~~~gG~v~~~  220 (425)
T PRK06084        203 TKYIGGHGTSIGGIVVDS  220 (425)
T ss_pred             hhcccccccceeEEEEeC
Confidence            999986223467777753

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.22  E-value=1.2e-09  Score=117.84  Aligned_cols=113  Identities=11%  Similarity=0.069  Sum_probs=80.3

Q ss_pred             HHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvD  278 (603)
                      ..++..|++|..++.+.. ...++.++|++.+..      +++++.+...+|.||..+|.+    +++.|+++|+++++|
T Consensus       130 ~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~------~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D  203 (383)
T TIGR03540       130 IGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAK------KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHD  203 (383)
T ss_pred             HHHHhcCCEEEEEecCcccCCccCHHHHHhhccc------cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEe
Confidence            345667999998887632 245788999888753      578888888899999999963    345789999999999


Q ss_pred             cccc----CCCCCCCCCCCC----CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          279 ACAL----GPKDMDSFGLSL----VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       279 Aaq~----~~~~m~~ldls~----~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      -+..    .++  ....+..    ....+++.||=|.||  ..|  +|.++..+++++
T Consensus       204 e~y~~l~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~g--~~GlRiG~~i~~~~l~~  257 (383)
T TIGR03540       204 NAYSEITFDGY--KAPSFLEVDGAKDVGIEFHSLSKTYN--MTGWRIGMAVGNADLIA  257 (383)
T ss_pred             cchhhhccCCC--CCcCcccCCCcccCEEEEEecccccC--CccceeeEEeCCHHHHH
Confidence            9753    232  1222221    124467788999999  558  999987665543

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.22  E-value=1.3e-08  Score=110.33  Aligned_cols=221  Identities=10%  Similarity=0.094  Sum_probs=137.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~  297 (603)
                      +.++|++.+..     +++++|.+....|.||.++|    ++.+ ++|+++|+++++|-++. .+.+  +...+.....|
T Consensus       166 d~~~le~~l~~-----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~p  240 (400)
T PTZ00125        166 DVEALEKLLQD-----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKP  240 (400)
T ss_pred             CHHHHHHHhCC-----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCC
Confidence            68889888852     35888888778899999998    7755 58999999999999864 3321  11233345578


Q ss_pred             cEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          298 DFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       298 Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      |++++|  |.++. + ..+|++++++++++.+.....+.+                                + .+  +.
T Consensus       241 d~~~~s--K~l~~-g~~~ig~v~~~~~~~~~~~~~~~~~t--------------------------------~-~~--~~  282 (400)
T PTZ00125        241 DIVLLG--KALSG-GLYPISAVLANDDVMLVIKPGEHGST--------------------------------Y-GG--NP  282 (400)
T ss_pred             CEEEEc--ccccC-CCcCcEEEEEcHHHHhhccCCCCCCC--------------------------------C-Cc--CH
Confidence            999987  98873 3 258999999887655542111000                                0 11  11


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ....+.                                        .++++.+.+-+   +.++.+.+.+++.++|.++.
T Consensus       283 ~~~~aa----------------------------------------~~~l~~i~~~~---~~~~~~~~~~~l~~~l~~l~  319 (400)
T PTZ00125        283 LACAVA----------------------------------------VEALEVLKEEK---LAENAQRLGEVFRDGLKELL  319 (400)
T ss_pred             HHHHHH----------------------------------------HHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHH
Confidence            111111                                        14677665433   34566667777777776652


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                      .    ..+.+...     ...|.++.+.++..++. ....+.++|. ++||.+..+                        
T Consensus       320 ~----~~~~~~~~-----~~~g~~~~v~~~~~~~~-~~~~~~~~l~-~~Gv~v~~~------------------------  364 (400)
T PTZ00125        320 K----KSPWVKEI-----RGKGLLNAIVFDHSDGV-NAWDLCLKLK-ENGLLAKPT------------------------  364 (400)
T ss_pred             h----cCCCeEEE-----ecccEEEEEEEccCcch-HHHHHHHHHH-HCCeEEeec------------------------
Confidence            1    01222111     12466777766542221 1223344554 568887421                        


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      ....||+++.+..|.+||+++++.|.+++++
T Consensus       365 ----------------~~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~  395 (400)
T PTZ00125        365 ----------------HDNIIRFAPPLVITKEQLDQALEIIKKVLKS  395 (400)
T ss_pred             ----------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                            1148999999999999999999999998865

>PRK07337 aminotransferase; Validated

Probab=99.21  E-value=2e-09  Score=116.38  Aligned_cols=187  Identities=11%  Similarity=0.055  Sum_probs=116.2

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--  183 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--  183 (603)
                      .+.++|+.+...+ .++.+.+++.+.+...    ...|            ..+           .-..+.|+.|++++  
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y------------~~~-----------~g~~~lr~~ia~~~~~   82 (388)
T PRK07337         30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG----VTQY------------TSA-----------LGLAPLREAIAAWYAR   82 (388)
T ss_pred             CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC----CCCC------------CCC-----------CCCHHHHHHHHHHHHH
Confidence            4568999887764 4666777765543210    0001            100           01246788888876  


Q ss_pred             --C--CCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhh
Q 007454          184 --N--ISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVS  236 (603)
Q Consensus       184 --n--a~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~  236 (603)
                        |  +++++++++..+. ++.                     .....++..|+++..++.+. .+..++.++|++.+..
T Consensus        83 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  162 (388)
T PRK07337         83 RFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGE  162 (388)
T ss_pred             HhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcCc
Confidence              3  5778886653321 111                     11233456688888888763 2357899999988863


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecc-ccCCCCCCCCCCCCCCCcEE-EEcccccCCC
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDAC-ALGPKDMDSFGLSLVRPDFL-ICSFYQIFGE  310 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAa-q~~~~~m~~ldls~~~~Dfl-v~S~hK~fG~  310 (603)
                            +++++.++.-+|.||..++.+    +++.|+++|+++++|-+ +....+-.+.....+..+.+ +.|+.|.||.
T Consensus       163 ------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~  236 (388)
T PRK07337        163 ------RTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNM  236 (388)
T ss_pred             ------cceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCC
Confidence                  578899999999999999964    23468899999999964 21211001222223345665 5699999984


Q ss_pred             CCCc--eEEEEEeCCCCcCc
Q 007454          311 NPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       311 ~P~G--~G~L~vkk~~~~~L  328 (603)
                        .|  +|.+++.+++++.+
T Consensus       237 --~G~RiG~~~~~~~l~~~l  254 (388)
T PRK07337        237 --TGWRLGWLVVPEALVGTF  254 (388)
T ss_pred             --chhheeeeecCHHHHHHH
Confidence              37  89998876554333

>PRK07550 hypothetical protein; Provisional

Probab=99.21  E-value=1.9e-09  Score=116.38  Aligned_cols=118  Identities=12%  Similarity=0.126  Sum_probs=78.1

Q ss_pred             HHHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDA  279 (603)
                      .++..|+++..++.+. .+..++.++|++.+..      +++++.+..-+|.||.++|.+    +++.|+++|++|++|.
T Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd  203 (386)
T PRK07550        130 WLDMLGIRPVYLPCDEGPGLLPDPAAAEALITP------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDE  203 (386)
T ss_pred             HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcc------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEec
Confidence            3466788988888752 2456789999998863      467777777889999999964    2346889999999999


Q ss_pred             cccCCC-C-CCCCCC-C--CCC-CcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          280 CALGPK-D-MDSFGL-S--LVR-PDFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       280 aq~~~~-~-m~~ldl-s--~~~-~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      +-..-. + -.+..+ +  ..+ -.+++.|+.|.||.+--.+|+++..++.+..+
T Consensus       204 ~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~  258 (386)
T PRK07550        204 TYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEI  258 (386)
T ss_pred             cchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHH
Confidence            732100 0 001111 1  111 24678999999984212389998876654433

>PRK08363 alanine aminotransferase; Validated

Probab=99.21  E-value=1.8e-09  Score=117.07  Aligned_cols=141  Identities=15%  Similarity=0.142  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHc------CCCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEE-eccCCcc
Q 007454          173 SAMKKRIMDFL------NISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSA-EFSWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l------na~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~-~~~~~~g  223 (603)
                      .+.|+.|++++      ++++++++++..+. ++..                     ....++..|.++..+ +.+..+.
T Consensus        73 ~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~  152 (398)
T PRK08363         73 PELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGW  152 (398)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCC
Confidence            46788888876      36788887764321 2111                     223445567777666 3432234


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HH-HHHHHHhCCcEEEEeccccC----CCCCCC-CCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG----PKDMDS-FGLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~-~i~~a~e~g~~vlvDAaq~~----~~~m~~-ldls~  294 (603)
                      .++.++|++.+..      +++++.++..+|.||..+|   ++ +++.|+++|+++++|.+-..    +.. .+ ..+..
T Consensus       153 ~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~-~~~~~~~~  225 (398)
T PRK08363        153 QPDIDDIRKKITE------KTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKH-VSPGSLTK  225 (398)
T ss_pred             cCCHHHHHhhCCc------ceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcc-cCHHHcCc
Confidence            6788888888753      5789999999999999999   44 33578999999999997321    110 01 11111


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEE
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      ..-=+++.||.|+|+.+.-++|++++
T Consensus       226 ~~~vi~~~SfSK~~~~~GlRiG~~~~  251 (398)
T PRK08363        226 DVPVIVMNGLSKVYFATGWRLGYIYF  251 (398)
T ss_pred             CCcEEEEecchhccCCccceEEEEEE
Confidence            11125567999998764445899887

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.20  E-value=1.4e-09  Score=115.88  Aligned_cols=112  Identities=15%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             HHHHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---H-HHHHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~-~i~~a~e~g~~vlvD  278 (603)
                      ..++..|+++..++.+. .+..++.+++++++..      +++++.++.-+|.||..+|.   + +++.|+++|+++++|
T Consensus       102 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D  175 (350)
T TIGR03537       102 RGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILE------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSD  175 (350)
T ss_pred             HHHHhcCCEEEEcccCcccCCccCHHHHHHhhhh------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEe
Confidence            33455688888887752 2345799999998864      57899999999999999994   4 335789999999999


Q ss_pred             cccc---CCCCCCCCCCCCCCCc--EEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          279 ACAL---GPKDMDSFGLSLVRPD--FLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       279 Aaq~---~~~~m~~ldls~~~~D--flv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      .+..   .++  .+..+..+..|  +++.|+.|.||.  .|  +|+++..+.+.
T Consensus       176 e~y~~~~~~~--~~~~~~~~~~~~~i~~~s~SK~~g~--~GlRiG~~~~~~~~~  225 (350)
T TIGR03537       176 ECYTEIYFGE--PPHSALEVGIENVLAFHSLSKRSGM--TGYRSGFVAGDEKLI  225 (350)
T ss_pred             ccccccccCC--CCCchhhcCcCCEEEEeecccccCC--ccccceeeecCHHHH
Confidence            9853   222  12222222233  677799999984  47  78776554443

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.20  E-value=1.3e-09  Score=116.35  Aligned_cols=146  Identities=10%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      .+.|+.+++++|+++++++++..+.                       +-......++..|+++..++.+ ++..++.++
T Consensus        60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~-~~~~~d~~~  138 (351)
T PRK01688         60 KAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL-DNWQLDLPA  138 (351)
T ss_pred             HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecC-CCCCCCHHH
Confidence            4788899999999999997653221                       1112234456779999988886 356788999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHh--CCcEEEEeccc--cCCCCCCCCC-CCCCCCcEEEEc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQE--NDWHILIDACA--LGPKDMDSFG-LSLVRPDFLICS  303 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e--~g~~vlvDAaq--~~~~~m~~ld-ls~~~~Dflv~S  303 (603)
                      |++.+.       +++++.+..-+|.||..++.+.+. +++.  .+.+|++|-+-  +.+.. ..++ +....-=+++-|
T Consensus       139 l~~~~~-------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~-s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        139 IADNLD-------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQA-SLAGWLAEYPHLVILRT  210 (351)
T ss_pred             HHHhcc-------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCC-ChHHHHhhCCCEEEEec
Confidence            988763       588999999999999999998553 4432  25789999873  22210 0111 122222367889


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      |.|+||  ..|  +|.++.++++++.+.
T Consensus       211 fSK~~g--laGlRiGy~i~~~~~i~~l~  236 (351)
T PRK01688        211 LSKAFA--LAGLRCGFTLANEEVINLLL  236 (351)
T ss_pred             chHhhc--CHHHHHhHHhCCHHHHHHHH
Confidence            999999  557  499888777655444

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.19  E-value=1.6e-08  Score=108.45  Aligned_cols=266  Identities=11%  Similarity=0.117  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHH-------cCCEEEEEeccCC--------------------
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEK-------RGARVMSAEFSWP--------------------  221 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~Ga~V~~~~~~~~--------------------  221 (603)
                      ....+..+++++++|.+  ++++... ++++...+..++.       .|.+|......+.                    
T Consensus        69 ~~~~~l~~~la~~~g~~--~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~  146 (379)
T TIGR00707        69 EPQEELAEKLVEHSGAD--RVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFE  146 (379)
T ss_pred             HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCC
Confidence            45667888999999874  5555443 3444444444421       1456665432110                    


Q ss_pred             ----cccc----CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccc-cc---HHHH-HHHHhCCcEEEEecccc-CCCC-
Q 007454          222 ----RLRI----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YP---YLWM-RIAQENDWHILIDACAL-GPKD-  286 (603)
Q Consensus       222 ----~g~i----~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~-~p---l~~i-~~a~e~g~~vlvDAaq~-~~~~-  286 (603)
                          +...    +.++|++.+..      +++++.+...+|.+|.. .+   ++.+ ++|+++|+++++|.++. .+.+ 
T Consensus       147 ~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g  220 (379)
T TIGR00707       147 PLVPGFSYAPYNDIESLKKAIDD------ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG  220 (379)
T ss_pred             CCCCCceeeCCCCHHHHHHHhhh------CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence                0111    67888887753      57888888888888875 34   4433 47899999999999875 3221 


Q ss_pred             -CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454          287 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS  365 (603)
Q Consensus       287 -m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~  365 (603)
                       ..+++.....+|+++  +.|.|| +...+|+++.++++++.+.+...+ .                             
T Consensus       221 ~~~~~~~~~~~~d~~t--~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~-~-----------------------------  267 (379)
T TIGR00707       221 KFFAYEHYGIEPDIIT--LAKGLG-GGVPIGATLAKEEVAEAFTPGDHG-S-----------------------------  267 (379)
T ss_pred             hhhhHHhcCCCCCEEE--Eccccc-CCcccEEEEEcHHHHhhhcCCCCC-C-----------------------------
Confidence             012223334678765  569998 344589999887776555431100 0                             


Q ss_pred             ccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH
Q 007454          366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI  445 (603)
Q Consensus       366 ~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~  445 (603)
                          --+ .|..+..+..                                        ++|++++.   ..+.++.+.++
T Consensus       268 ----~~~-~~~~~~~aa~----------------------------------------aaL~~~~~---~~~~~~~~~~~  299 (379)
T TIGR00707       268 ----TFG-GNPLACAAAL----------------------------------------AVLEVIEK---ERLLENVKEKG  299 (379)
T ss_pred             ----CCC-CCHHHHHHHH----------------------------------------HHHHHHHh---hhHHHHHHHHH
Confidence                001 1222222211                                        46666543   34667788888


Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454          446 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK  525 (603)
Q Consensus       446 ~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~  525 (603)
                      +++.++|.++.. .   .. +   .+ . ...|.++.+.+.+.      ...+.+.+.++||.++.+             
T Consensus       300 ~~~~~~l~~~~~-~---~~-~---~~-~-~~~g~~~~~~~~~~------~~~~~~~l~~~Gv~v~~~-------------  350 (379)
T TIGR00707       300 DYFKERLEELGK-N---YP-N---KE-V-RGKGLMLGIELEAP------CKDIVKKALEKGLLVNCA-------------  350 (379)
T ss_pred             HHHHHHHHHHHh-h---CC-C---Cc-c-ccCceEEEEEecCc------HHHHHHHHHHCCcEEeeC-------------
Confidence            888888876521 0   00 1   11 1 12456777776541      234555566789988631             


Q ss_pred             hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                              +   .+.||+|+++..|.||++++++.|++.
T Consensus       351 ------------------------~---~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       351 ------------------------G---PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             ------------------------C---CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence                                    1   158999999999999999999999865

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.18  E-value=3e-10  Score=123.72  Aligned_cols=106  Identities=17%  Similarity=0.178  Sum_probs=80.0

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC--CcEEEEecccc
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACAL  282 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~  282 (603)
                      ++..|+++..++..      +.++|++.|..      +|+++.+...+|.||.+.|++.| ++|+++  |+.|++|.+..
T Consensus       124 ~~~~G~~v~~vd~~------d~e~l~~~i~~------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~  191 (400)
T PRK06234        124 LTRYGVEVTFVDTS------NLEEVRNALKA------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFC  191 (400)
T ss_pred             HhhCCeEEEEECCC------CHHHHHHHhcc------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence            44566666666542      57888888863      68999999999999999999855 588986  99999999977


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCc
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPIL  328 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L  328 (603)
                      .+..-.++   .+++|+++.|++|+||+ | |   .|+++.+++..+.+
T Consensus       192 ~~~~~~~l---~~g~Divv~S~sK~l~g-~-g~~~gG~v~~~~~~~~~l  235 (400)
T PRK06234        192 TPYIQRPL---QLGADVVVHSATKYLNG-H-GDVIAGFVVGKEEFINQV  235 (400)
T ss_pred             chhcCCch---hhCCcEEEeeccccccC-C-CCceeEEEEecHHHHHHH
Confidence            66521233   34799999999999984 3 5   58888877654433

>PRK07682 hypothetical protein; Validated

Probab=99.18  E-value=2.1e-09  Score=115.65  Aligned_cols=149  Identities=13%  Similarity=0.196  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcC------CCCC-cEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCC-c
Q 007454          173 SAMKKRIMDFLN------ISEN-DYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWP-R  222 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~-e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~  222 (603)
                      .+.|+.|+++++      ++++ +++++..+. ++..                     ....++..|+++..++.++. +
T Consensus        60 ~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  139 (378)
T PRK07682         60 LELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENE  139 (378)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccC
Confidence            367777777774      4554 687654321 2211                     22334556778777776532 3


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCC---CCCCC-CCCC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPK---DMDSF-GLSL  294 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~---~m~~l-dls~  294 (603)
                      ..++.++|++++..      +++++.+..-+|.||..+|.+.    +..|+++++++++|.+...-.   ...++ .+..
T Consensus       140 ~~~d~~~l~~~~~~------~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  213 (378)
T PRK07682        140 FKVQPAQIEAAITA------KTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKG  213 (378)
T ss_pred             CCCCHHHHHhhcCc------ccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhccc
Confidence            46889999988753      5778878778999999998652    246789999999998743211   00011 1111


Q ss_pred             -CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          295 -VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       295 -~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                       ..-.+++.|+-|.||.  .|  +|.++..+++++.+.
T Consensus       214 ~~~~~i~~~S~SK~~~~--~GlR~G~~~~~~~~i~~l~  249 (378)
T PRK07682        214 MRERTILISGFSKGFAM--TGWRLGFIAAPVYFSEAML  249 (378)
T ss_pred             ccCCEEEEecCcccccC--hhhhhhhhhcCHHHHHHHH
Confidence             2346899999999994  47  899998777655443

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.18  E-value=3.7e-09  Score=114.59  Aligned_cols=118  Identities=15%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEec
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDA  279 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDA  279 (603)
                      ..++..|.++..++.+..+..++.++|++++...   +++++++.+..-+|.||..++.+.    ++.|+++++++++|.
T Consensus       130 ~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~  206 (391)
T PRK07309        130 PIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQ---GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDE  206 (391)
T ss_pred             HHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhcc---CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEc
Confidence            3456679999998876334578999999988631   135788888888999999999542    346789999999999


Q ss_pred             cccC----CCCCCCCCCCCCCCc--EEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          280 CALG----PKDMDSFGLSLVRPD--FLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       280 aq~~----~~~m~~ldls~~~~D--flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      +...    +.  ...++..+..|  +++.|+.|.||.  .|  +|.++..+++++.+
T Consensus       207 ~y~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~g~--~GlRvG~~v~~~~~~~~~  259 (391)
T PRK07309        207 VYSELTYTGE--PHVSIAEYLPDQTILINGLSKSHAM--TGWRIGLIFAPAEFTAQL  259 (391)
T ss_pred             cccceeeCCC--CCCCHHHhccCCEEEEecChhhccC--ccceeEEEEeCHHHHHHH
Confidence            7432    21  11222222234  888999999994  37  88898877665433

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.18  E-value=1.1e-09  Score=118.51  Aligned_cols=106  Identities=11%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG  283 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~  283 (603)
                      .+++.|.++..++.+      +.++|++.+.      +++++|.+...+|.+|.+.|++.| ++|+++|++|++|.++..
T Consensus       113 ~~~~~g~~v~~v~~~------d~~~l~~~i~------~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~  180 (380)
T TIGR01325       113 ILPRFGIEVSFVDPT------DLNAWEAAVK------PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFAT  180 (380)
T ss_pred             HHHHhCCEEEEECCC------CHHHHHHhcC------CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcc
Confidence            344556666665542      5677777775      368999999999999999999966 589999999999999765


Q ss_pred             CCCCCCCCCCCCCCcEEEEcccccCCCCCC-ce-EEEEEeCCCCc
Q 007454          284 PKDMDSFGLSLVRPDFLICSFYQIFGENPS-GF-GCLFVKKSTVP  326 (603)
Q Consensus       284 ~~~m~~ldls~~~~Dflv~S~hK~fG~~P~-G~-G~L~vkk~~~~  326 (603)
                      +..-.++   .+++|+++.|++|++|+ +. .+ |+++.+++..+
T Consensus       181 ~~~~~pl---~~g~Divv~S~sK~l~g-~g~~~gG~vv~~~~~~~  221 (380)
T TIGR01325       181 PVLQQPL---KLGADVVVYSATKHIDG-QGRVMGGVIAGSEELMA  221 (380)
T ss_pred             cccCCch---hhCCCEEEeeccceecC-CCCeEEEEEEeCHHHHH
Confidence            4311233   35799999999999984 32 24 55655655433

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK03321 putative aminotransferase; Provisional

Probab=99.17  E-value=4.2e-09  Score=112.17  Aligned_cols=184  Identities=11%  Similarity=0.113  Sum_probs=118.7

Q ss_pred             CceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          108 NHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       108 ~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +.+.|+....+. +++.+++++.+.....                   ...+.          .-..+.|+.|++++|++
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~-------------------~~y~~----------~g~~~lr~~ia~~~~~~   73 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAGV-------------------NRYPD----------MGAVELRAALAEHLGVP   73 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHhc-------------------CcCCC----------CcHHHHHHHHHHHhCcC
Confidence            357788775554 5677888876542110                   00110          11468999999999999


Q ss_pred             CCcEEEeccCch-HHH---------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          187 ENDYVYDYESEA-VEA---------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       187 ~~e~vf~~es~s-V~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      +++++++..+.. +..                     ....++..|+++..++.+ +++.++.+++++.+..      ++
T Consensus        74 ~~~I~~~~G~~~~l~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~~~~~~------~~  146 (352)
T PRK03321         74 PEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLT-PDHTHDLDAMAAAITD------RT  146 (352)
T ss_pred             HHHEEECCCHHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCC-CCCCCCHHHHHHhhcc------CC
Confidence            999987643221 111                     112345568888888876 3577889999988853      57


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHh--CCcEEEEecccc----CCCCCCCCCCCCCCCcE-EEEcccccCCCCCCc--
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACAL----GPKDMDSFGLSLVRPDF-LICSFYQIFGENPSG--  314 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~----~~~~m~~ldls~~~~Df-lv~S~hK~fG~~P~G--  314 (603)
                      ++|.++..+|.||.++|.+.+ ++++.  +++++++|.+-.    .+....++..-....+. ++.|+=|.||  ..|  
T Consensus       147 ~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g--~~GlR  224 (352)
T PRK03321        147 RLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYG--LAGLR  224 (352)
T ss_pred             CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhh--hHHHh
Confidence            899999999999999999854 56765  589999999732    11100111111122344 4558999999  447  


Q ss_pred             eEEEEEeCCCCcCcC
Q 007454          315 FGCLFVKKSTVPILV  329 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~  329 (603)
                      +|+++.++++++.+.
T Consensus       225 iG~~v~~~~~~~~~~  239 (352)
T PRK03321        225 VGYAVGHPEVIAALR  239 (352)
T ss_pred             hhhhcCCHHHHHHHH
Confidence            899888766654443

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.16  E-value=4.8e-09  Score=114.45  Aligned_cols=104  Identities=10%  Similarity=0.083  Sum_probs=81.0

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ..+++.|+++..++..      +.++++++|..      +|++|.+...+|.||.+.|++.| ++|+++|+.|++|.++.
T Consensus       128 ~~~~~~G~~v~~vd~~------d~~~l~~ai~~------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        128 EILPRWGVETVFVDGE------DLSQWEEALSV------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHHHHcCcEEEEECCC------CHHHHHHhcCc------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence            4456678888877642      67888888863      68999999999999999999955 58999999999999988


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKST  324 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~  324 (603)
                      .|....++   .+++|++++|++|++|+  .|   .|+++.+++.
T Consensus       196 ~~~~~~~~---~~gaDivv~S~tK~l~g--~g~~~gG~v~~~~~~  235 (403)
T PRK07810        196 TPLLQRGL---PLGADVVVYSGTKHIDG--QGRVLGGAILGDREY  235 (403)
T ss_pred             ccccCChh---hcCCcEEEccCCceecC--CcCceeEEEEeChHH
Confidence            77521233   45899999999999983  35   4767666654

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.16  E-value=3.2e-09  Score=114.77  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHH------------------------HHHHHHHHcCCEEEEEeccCCcccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVE------------------------AMIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~------------------------~~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ....+.+++++++.|+.. .+++..-..++.                        .+.+.+++.|+++..++.      .
T Consensus        50 p~~~~Le~~lA~l~g~~~-~~~~~sG~aai~~~~~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~------~  122 (377)
T PRK07671         50 PTRAALEELIAVLEGGHA-GFAFGSGMAAITAVMMLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT------S  122 (377)
T ss_pred             hHHHHHHHHHHHHhCCCc-eEEeCCHHHHHHHHHHHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC------C
Confidence            445678888888888743 454432211111                        122233455666666543      2


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++++++|.+      +|++|.+...+|.||.+.|++.| ++|+++|+.+++|.++..+....++   .+++|++++|+
T Consensus       123 d~~~l~~ai~~------~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~p~---~~g~Divv~S~  193 (377)
T PRK07671        123 NLEEVEEAIRP------NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQSPI---SLGADIVLHSA  193 (377)
T ss_pred             CHHHHHHhcCC------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCChh---hhCCeEEEecC
Confidence            67888888853      68999999999999999999966 5899999999999997655411233   35889999999


Q ss_pred             cccCCCCCCc-eE-EEEEeC
Q 007454          305 YQIFGENPSG-FG-CLFVKK  322 (603)
Q Consensus       305 hK~fG~~P~G-~G-~L~vkk  322 (603)
                      +|+||+ |.+ +| ++++++
T Consensus       194 sK~l~G-~~~~~~G~~v~~~  212 (377)
T PRK07671        194 TKYLGG-HSDVVAGLVVVNS  212 (377)
T ss_pred             cccccC-CccceeEEEEeCc
Confidence            999986 654 44 455543

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.16  E-value=5.1e-09  Score=113.42  Aligned_cols=87  Identities=16%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|+++|..      +|+|+.+...+|.||.+.|++.| ++|+++|++|++|.++..|.  ..-.+ .+++|+++.|+
T Consensus       125 d~~~l~~ai~~------~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~--~~~pl-~~gaDivv~S~  195 (382)
T TIGR02080       125 DEQALRAALAQ------KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPA--LQNPL-ALGADLVLHSC  195 (382)
T ss_pred             CHHHHHHhcCc------CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCCCEEEeec
Confidence            57788887753      68999999999999999999966 58999999999999987664  22222 35789999999


Q ss_pred             cccCCCCCCc--eEEEEEeC
Q 007454          305 YQIFGENPSG--FGCLFVKK  322 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk  322 (603)
                      +|++++ +.|  .|++.+++
T Consensus       196 sK~l~G-~~~~~~G~i~~~~  214 (382)
T TIGR02080       196 TKYLNG-HSDVIAGAVIAKD  214 (382)
T ss_pred             ceeccC-CCCceeEEEEeCC
Confidence            999875 556  56555543

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.16  E-value=1.2e-09  Score=118.27  Aligned_cols=101  Identities=12%  Similarity=0.106  Sum_probs=75.3

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG  283 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~  283 (603)
                      .+++.|+++..++.      .+.+++++.+.+      +|++|.+...+|.||.+.|++.| ++|+++|++|++|.++..
T Consensus       108 ~~~~~gi~v~~vd~------~d~e~l~~ai~~------~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~  175 (380)
T PRK06176        108 VLVKNGLSCTIIDT------SDLSQIKKAIKP------NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFAT  175 (380)
T ss_pred             HHHhcCeEEEEcCC------CCHHHHHHhcCc------CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccc
Confidence            34556666665543      257888887753      68999998889999999999855 589999999999999876


Q ss_pred             CCCCCCCCCCCCCCcEEEEcccccCCCCCCc-eEE-EEEe
Q 007454          284 PKDMDSFGLSLVRPDFLICSFYQIFGENPSG-FGC-LFVK  321 (603)
Q Consensus       284 ~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~-L~vk  321 (603)
                      +....++   .+++|++++|++|++|+ |.. +|. ++.+
T Consensus       176 ~~~~~p~---~~gaDivv~S~tK~l~g-~~d~~gG~vv~~  211 (380)
T PRK06176        176 PYYQNPL---LLGADIVVHSGTKYLGG-HSDVVAGLVTTN  211 (380)
T ss_pred             cccCCcc---ccCCCEEEecCceeccC-CccceeeEEEec
Confidence            6521233   46899999999999986 443 444 4444

>PRK07324 transaminase; Validated

Probab=99.15  E-value=6.8e-09  Score=111.88  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=98.7

Q ss_pred             HHHHHHHHHcC-CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc-cccCHHH
Q 007454          174 AMKKRIMDFLN-ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR-LRINSEK  229 (603)
Q Consensus       174 ~aR~~Ia~~ln-a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~-g~i~~~~  229 (603)
                      +.|+.|+++++ +++++++++..+                      .+.......++..|++++.++.+..+ ..++.++
T Consensus        66 ~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~  145 (373)
T PRK07324         66 EFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDE  145 (373)
T ss_pred             HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHH
Confidence            78999999885 678888765422                      11222334566789999999886323 3578899


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCcccccccccc---HH-HHHHHHhCCcEEEEeccccC-CCCCCCCCCC-CCCCcEEEEc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YL-WMRIAQENDWHILIDACALG-PKDMDSFGLS-LVRPDFLICS  303 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~-~i~~a~e~g~~vlvDAaq~~-~~~m~~ldls-~~~~Dflv~S  303 (603)
                      |++.+..      ++++++++..+|.||.++|   ++ ++++|+++|+++++|.+... ..+-....+. ...-.+++.|
T Consensus       146 l~~~~~~------~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s  219 (373)
T PRK07324        146 LRRLVRP------NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNS  219 (373)
T ss_pred             HHHhCCC------CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEec
Confidence            9887753      6889999999999999999   55 33578999999999986321 1100011111 1122366779


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      +-|.||.  .|  +|.++..+++++.+
T Consensus       220 ~SK~~~~--~G~RiG~i~~~~~li~~~  244 (373)
T PRK07324        220 MSKTYSL--PGIRVGWIAANEEVIDIL  244 (373)
T ss_pred             chhhcCC--ccceeEEEecCHHHHHHH
Confidence            9999994  36  68888766554433

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.15  E-value=4e-09  Score=113.74  Aligned_cols=148  Identities=13%  Similarity=0.092  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHc----C--CCCC-cEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCC-c
Q 007454          173 SAMKKRIMDFL----N--ISEN-DYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWP-R  222 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~-e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~  222 (603)
                      .+.|+.|++++    |  ++++ +++++..++ ++..                     ....++..|+++..++.+.. .
T Consensus        72 ~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g  151 (385)
T PRK09276         72 LEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENG  151 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCC
Confidence            36777788877    4  4565 476654321 2211                     22345567899998887633 2


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccC----CCCCCCC-CCC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDSF-GLS  293 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~----~~~m~~l-dls  293 (603)
                      ..++.+++++.+..      +++++.+..-+|.||..+|.+    +++.|+++|+++++|-+...    ++.+.++ .+.
T Consensus       152 ~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~  225 (385)
T PRK09276        152 FLPDLDAIPEDVAK------KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVP  225 (385)
T ss_pred             CcCCHHHHHHhccc------cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccC
Confidence            45788888887753      578888888899999999974    34567999999999987532    2210111 111


Q ss_pred             C-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          294 L-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       294 ~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      . .+..+++.|+=|.||  ..|  +|.++..+++++.+
T Consensus       226 ~~~~~~i~~~S~SK~~g--~~GlRiG~~i~~~~l~~~~  261 (385)
T PRK09276        226 GAKDVGIEFHSLSKTYN--MTGWRIGFAVGNADLIAGL  261 (385)
T ss_pred             CCcCCEEEEecchhhcC--CcchhheeeeCCHHHHHHH
Confidence            1 233577788999999  558  99998766654433

>PLN02624 ornithine-delta-aminotransferase

Probab=99.12  E-value=5.2e-08  Score=108.54  Aligned_cols=229  Identities=15%  Similarity=0.136  Sum_probs=140.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~  297 (603)
                      +.+.|++.|...   ..++..|.+-.+.|.+|.++|    ++.+ ++|+++|+++++|-+|. .+..  +...+.....|
T Consensus       210 d~~~l~~~l~~~---~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~p  286 (474)
T PLN02624        210 DLDALEKIFEED---GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRP  286 (474)
T ss_pred             CHHHHHHHHHhC---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCC
Confidence            568888888632   236888888888899999999    7755 48999999999999876 2221  12334445679


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |++++|  |-+|....-+|+++++++++..+.+...+.+                                  .|.++..
T Consensus       287 Div~ls--K~lggG~~pigav~~~~~i~~~~~~~~~~~T----------------------------------~~g~pl~  330 (474)
T PLN02624        287 DVVILG--KALGGGVIPVSAVLADKDVMLCIKPGEHGST----------------------------------FGGNPLA  330 (474)
T ss_pred             CEEEec--ccccCCCCcceeeeecHHHHhHhccCCcCCC----------------------------------CCCCHHH
Confidence            999987  9776411347888888776544432111100                                  0111222


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++                                         ++|+.+.+.   .+.++...+.++|.++|.++..
T Consensus       331 ~aaa~-----------------------------------------aaLe~l~~~---~l~~~~~~~~~~l~~~L~~l~~  366 (474)
T PLN02624        331 SAVAM-----------------------------------------AALQVVQDE---KLAERSAKLGQELRDQLQKIQK  366 (474)
T ss_pred             HHHHH-----------------------------------------HHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHH
Confidence            22221                                         466665542   3455677777788887776531


Q ss_pred             CCCCCCc-eEEEeCCCCCCCCCCEEEEEEccCC-CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          458 PNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWK-REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       458 ~~~~g~p-lv~Iygp~~~~~rg~ivsFnv~~~~-g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      .    .| .+.-.     ..+|.++.+.+.+.. +..... .+.+.+.++||.+..+                       
T Consensus       367 ~----~~~~i~~v-----rg~G~~~~i~l~~~~~~~~~a~-~~~~~L~e~GV~v~p~-----------------------  413 (474)
T PLN02624        367 Q----FPKLIKEV-----RGRGLLNAVVLNSPKLGPVSAY-DVCLKLKERGLLAKPT-----------------------  413 (474)
T ss_pred             h----CCCceEEE-----EeeEEEEEEEecCCCcChHHHH-HHHHHHHhCCeEEecC-----------------------
Confidence            0    11 12100     124667776664321 011112 2333345578876421                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhc
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVE  587 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~  587 (603)
                                       ...+||+++.+..|.+||+++++.|++++..+-..
T Consensus       414 -----------------~~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~  448 (474)
T PLN02624        414 -----------------HDTIIRLAPPLSISEDELQECSKALSDVLEHDLPK  448 (474)
T ss_pred             -----------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence                             12589999999999999999999999999886554

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.11  E-value=5.2e-09  Score=113.42  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             HHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---H-HHHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---W-MRIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~-i~~a~e~g~~vlvDA  279 (603)
                      .++..|+++..++++.. +..++.++|++.+..      +++++.+..-+|.||..+|.+   . +..|+++|++|++|.
T Consensus       137 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~------~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De  210 (394)
T PRK05942        137 GPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ------QAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDL  210 (394)
T ss_pred             HHHHcCCEEEEeecCCccCCccCHHHHHHhccc------cceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEec
Confidence            34567899998887632 235899999888753      578888888899999999954   2 346899999999998


Q ss_pred             ccc----CCCCCCC-CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          280 CAL----GPKDMDS-FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       280 aq~----~~~~m~~-ldls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      +-.    -+....+ .++.. ....+++.||=|.||.+.-.+|.++..+++++.+
T Consensus       211 ~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l  265 (394)
T PRK05942        211 CYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGL  265 (394)
T ss_pred             cchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHHHH
Confidence            721    1110001 11211 1234667888899984322289998877665444

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.11  E-value=7.4e-08  Score=106.87  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=84.3

Q ss_pred             HHcCCEEEEEeccCC---------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHH---HH-HHHHhCC
Q 007454          207 EKRGARVMSAEFSWP---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYL---WM-RIAQEND  272 (603)
Q Consensus       207 ~~~Ga~V~~~~~~~~---------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~---~i-~~a~e~g  272 (603)
                      +..|++++.++.+..         .+.+|.++|++.|..+.  .++|+++++..-+|.|| ..++.+   .| ++|+++|
T Consensus       134 ~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~--~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~g  211 (460)
T PRK13238        134 ELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG--AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYG  211 (460)
T ss_pred             HHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcC--CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcC
Confidence            456899998887421         35699999999997421  13699999999999998 788764   34 4689999


Q ss_pred             cEEEEeccccCCCC---------CCCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEeC-CCCcCcC
Q 007454          273 WHILIDACALGPKD---------MDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKK-STVPILV  329 (603)
Q Consensus       273 ~~vlvDAaq~~~~~---------m~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk-~~~~~L~  329 (603)
                      ++|++|+++....-         .....+..      ...|++++|+||++.. |.| |+|+.++ ++...++
T Consensus       212 i~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~-~~G-G~i~~~d~~l~~~~~  282 (460)
T PRK13238        212 IPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMV-NIG-GLLCFRDEDLFTECR  282 (460)
T ss_pred             CEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCC-cce-eEEEcChHHHHHHhh
Confidence            99999998865210         01222211      2489999999997654 777 8888884 4544444

>PRK07683 aminotransferase A; Validated

Probab=99.10  E-value=1.4e-08  Score=109.78  Aligned_cols=145  Identities=15%  Similarity=0.219  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHc----C--CCCC-cEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCCcc
Q 007454          173 SAMKKRIMDFL----N--ISEN-DYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~-e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      .+.|+.|++++    |  ++++ +++++..+ +++..                     ....++..|+++..++.+..+.
T Consensus        68 ~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~  147 (387)
T PRK07683         68 LELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGF  147 (387)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCcccC
Confidence            46788888877    3  4676 88776432 12221                     1233456788888888763345


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccCC-CCCCCCCCCCC---
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGP-KDMDSFGLSLV---  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~~-~~m~~ldls~~---  295 (603)
                      .++.++|++.+..      ++++++++..+|.||..+|.+    +++.|+++|+++++|.+-..- .+=....+..+   
T Consensus       148 ~~~~~~l~~~~~~------~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  221 (387)
T PRK07683        148 RLTAEALENAITE------KTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM  221 (387)
T ss_pred             CCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCC
Confidence            5678889888753      578999999999999999964    335688999999999874321 00011122222   


Q ss_pred             -CCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          296 -RPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       296 -~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                       +-.+++.|+=|.||. | |  +|++++.++++
T Consensus       222 ~~~vi~~~s~SK~~~~-p-GlRiG~i~~~~~l~  252 (387)
T PRK07683        222 REKTIVINGLSKSHSM-T-GWRIGFLFAPSYLA  252 (387)
T ss_pred             cCCeEEEeeccccccC-c-cceeEEEEcCHHHH
Confidence             235888999999995 3 6  88888765544

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.09  E-value=8.5e-09  Score=113.00  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=80.0

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ..+++.|+++..++.+      +.++|++.|..      ++++|.+...+|.||.+.|++.| ++|+++|+.+++|.++.
T Consensus       115 ~~~~~~G~~v~~v~~~------d~~~l~~~l~~------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~  182 (418)
T TIGR01326       115 HTLKRLGIEVRFVDPD------DPEEFEKAIDE------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFA  182 (418)
T ss_pred             HHHHHcCcEEEEECCC------CHHHHHHhcCc------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCc
Confidence            3445667777776532      67888888853      58899999999999999999966 58999999999999987


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                      .|....++   .+++|+++.|++|+||  +.|  +|.+++++.
T Consensus       183 ~~~~~~~l---~~g~Divv~S~sK~l~--g~G~~lGg~v~~~~  220 (418)
T TIGR01326       183 TPYLCRPI---DHGADIVVHSATKYIG--GHGTAIGGVIVDGG  220 (418)
T ss_pred             hhhcCCch---hcCCeEEEECcccccc--CCccceEEEEEecc
Confidence            66421222   3579999999999999  445  888888654

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.09  E-value=4.9e-08  Score=106.47  Aligned_cols=113  Identities=13%  Similarity=0.163  Sum_probs=78.3

Q ss_pred             HHHHHcCCEEEEEeccC----CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEE
Q 007454          204 RTSEKRGARVMSAEFSW----PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHI  275 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~----~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~v  275 (603)
                      ..++..|+++..++++.    .+..++.++|++.+..      +++++.+..-+|.||.++|.+.    ++.|+++|+++
T Consensus       141 ~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~i  214 (405)
T PRK06207        141 KLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATV  214 (405)
T ss_pred             HHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence            44566788988888752    1346889999998863      4788888888999999999653    34678999999


Q ss_pred             EEeccccC----CCCCCCCCCCCCCC--c--EEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          276 LIDACALG----PKDMDSFGLSLVRP--D--FLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       276 lvDAaq~~----~~~m~~ldls~~~~--D--flv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      ++|-+-.-    +..  ...+..+..  |  +++.||-|.||.  .|  +|.++..+.+++
T Consensus       215 I~De~Y~~~~~~~~~--~~~~~~~~~~~~~vi~i~SfSK~~~l--pGlRiG~ii~~~~l~~  271 (405)
T PRK06207        215 IVDQLYSRLLYDGTS--YTHLRALPIDPENVITIMGPSKTESL--SGYRLGVAFGSPAIID  271 (405)
T ss_pred             EEeccccccccCCCC--CCchhcCCCCcCcEEEEecchhhccC--cccceEEEEcCHHHHH
Confidence            99986321    210  111211111  2  788999999994  38  888877665543

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.08  E-value=2.8e-08  Score=110.80  Aligned_cols=148  Identities=10%  Similarity=0.058  Sum_probs=95.3

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC----
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN----  184 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln----  184 (603)
                      .+-+|.++++++|..+++++.+++....                   .   ....|+..  .-..+.|+.|+++++    
T Consensus        78 ~~i~~~~~~~~~P~~~~~~~~~~~~~~~-------------------~---~~~~Y~~~--~G~~~LR~aia~~~~~~~g  133 (481)
T PTZ00377         78 FLLEDPSVSSLFPADVVARAKEYLNAIG-------------------G---GTGAYTDS--AGYPFVRKAVAAFIERRDG  133 (481)
T ss_pred             hhhcCccccccCCHHHHHHHHHHHHhCC-------------------C---cccCcCcc--cCCHHHHHHHHHHHHHhcC
Confidence            3456778999999999988764332110                   0   00111110  113468888888875    


Q ss_pred             --CCCCcEEEeccCc-hH----------------------HHHHHHHHHcCCEEEEEeccCCc-cccCHHHHHHHHhhcC
Q 007454          185 --ISENDYVYDYESE-AV----------------------EAMIRTSEKRGARVMSAEFSWPR-LRINSEKLRKMVVSKG  238 (603)
Q Consensus       185 --a~~~e~vf~~es~-sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~-g~i~~~~L~~~l~~~~  238 (603)
                        +++++++++..+. ++                      ......++..|++++.++++..+ ..++.++|++.+...+
T Consensus       134 ~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~  213 (481)
T PTZ00377        134 VPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAV  213 (481)
T ss_pred             CCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHH
Confidence              5788887654321 11                      11233445678888888876322 3689999999986421


Q ss_pred             CCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecc
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDAC  280 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAa  280 (603)
                      +...+++++.+..-+|.||.++|.+.    +..|++++++|+.|-+
T Consensus       214 ~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~  259 (481)
T PTZ00377        214 RNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEV  259 (481)
T ss_pred             hcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehh
Confidence            11225788777788999999999642    3468899999999975

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.08  E-value=3.5e-08  Score=106.77  Aligned_cols=180  Identities=11%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454          108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL---  183 (603)
Q Consensus       108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l---  183 (603)
                      +.++||.+... +.++.+.+++.+.....     ..|            ..  .         .-..+.|+.|++++   
T Consensus        31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~-----~~Y------------~~--~---------~g~~~lr~~ia~~~~~~   82 (397)
T PRK07568         31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEV-----LAY------------SH--S---------QGIPELREAFAKYYKKW   82 (397)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHhcCC-----cCc------------CC--C---------CCCHHHHHHHHHHHHHh
Confidence            46889998876 35667777765432100     000            00  0         11246888888887   


Q ss_pred             --CCCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCCccc--cCHHHHHHHHhhc
Q 007454          184 --NISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWPRLR--INSEKLRKMVVSK  237 (603)
Q Consensus       184 --na~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~--i~~~~L~~~l~~~  237 (603)
                        ++++++++++.... ++..                     ....++..|+++..++.+..++.  .+.++|++.+.. 
T Consensus        83 ~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~-  161 (397)
T PRK07568         83 GIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-  161 (397)
T ss_pred             CCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCc-
Confidence              57788886653221 1111                     12334566888888887522332  246888887753 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHH---H-HHHHHhCCcEEEEecccc-C---CCCCCC-CCCCCCC-CcEEEEccccc
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYL---W-MRIAQENDWHILIDACAL-G---PKDMDS-FGLSLVR-PDFLICSFYQI  307 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~-i~~a~e~g~~vlvDAaq~-~---~~~m~~-ldls~~~-~Dflv~S~hK~  307 (603)
                           ++++|+++..+|.||.++|.+   . ++.|+++|+++++|.+-. .   +....+ +++.... --+++-|+.|.
T Consensus       162 -----~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~  236 (397)
T PRK07568        162 -----KTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR  236 (397)
T ss_pred             -----cceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhh
Confidence                 688999999999999999854   2 346899999999998632 1   210011 2221111 12677899999


Q ss_pred             CCCCCCceEEEEEe
Q 007454          308 FGENPSGFGCLFVK  321 (603)
Q Consensus       308 fG~~P~G~G~L~vk  321 (603)
                      ||.+-..+|.++..
T Consensus       237 ~~~~G~R~G~~~~~  250 (397)
T PRK07568        237 YSACGARIGCLISK  250 (397)
T ss_pred             ccCCCcceEEEecC
Confidence            98422237777653

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.07  E-value=3.9e-09  Score=112.35  Aligned_cols=271  Identities=16%  Similarity=0.165  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHcC------CCCC-cEEEeccCc-----------------------hHHHHHHHHHHcCCEEEEEeccC-
Q 007454          172 ESAMKKRIMDFLN------ISEN-DYVYDYESE-----------------------AVEAMIRTSEKRGARVMSAEFSW-  220 (603)
Q Consensus       172 ~~~aR~~Ia~~ln------a~~~-e~vf~~es~-----------------------sV~~~~~~a~~~Ga~V~~~~~~~-  220 (603)
                      ....|+.|+++++      .+++ +++......                       .-....+.++..|.++..+++++ 
T Consensus        46 ~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~  125 (363)
T PF00155_consen   46 YPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSE  125 (363)
T ss_dssp             HHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEET
T ss_pred             hHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccccccccceecCCccccccccccccCceeeecccccc
Confidence            4589999999999      7777 776543211                       11223445667788888888642 


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HH---HHhCCcEEEEeccccCCCCCCC-------
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RI---AQENDWHILIDACALGPKDMDS-------  289 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~---a~e~g~~vlvDAaq~~~~~m~~-------  289 (603)
                      .+..++.++|++.+.+.+.+..+++++.++..+|.||..+|.+.+ ++   |+++|.++++|-+...... ..       
T Consensus       126 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~  204 (363)
T PF00155_consen  126 NDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIF-GDPDFGPIR  204 (363)
T ss_dssp             TTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBS-SSSHTHHHH
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceecccc-CCCccCccc
Confidence            356789999999998522211157899999999999999999744 34   7899999999987443220 11       


Q ss_pred             CCCCCCCC-cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454          290 FGLSLVRP-DFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK  366 (603)
Q Consensus       290 ldls~~~~-Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  366 (603)
                      ..+. ... -+++.|+-|.||.  .|  +|.+++.+...+.+....                                  
T Consensus       205 ~~~~-~~~~vi~~~S~SK~~g~--~GlRvG~i~~~~~~~~~l~~~~----------------------------------  247 (363)
T PF00155_consen  205 SLLD-EDDNVIVVGSLSKSFGL--PGLRVGYIVAPPELIERLRRFQ----------------------------------  247 (363)
T ss_dssp             GHHT-TTSTEEEEEESTTTTTS--GGGTEEEEEEEHHHHHHHHHHH----------------------------------
T ss_pred             cccc-ccccceeeeeccccccc--cccccccccchhhhhhhhhhcc----------------------------------
Confidence            1122 233 4999999999994  37  899999775543333100                                  


Q ss_pred             cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc--CHHHHHHHHHHH
Q 007454          367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLTMISRRGRCL  444 (603)
Q Consensus       367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i--Gl~~i~~r~~~L  444 (603)
                         ..+..+......+.                                        ..+......  -+.++.++.+..
T Consensus       248 ---~~~~~~~~~~~~~~----------------------------------------~~l~~~~~~~~~~~~~~~~l~~~  284 (363)
T PF00155_consen  248 ---RSGLSSSPMQAAAA----------------------------------------AALSDPELVEKWLEELRERLREN  284 (363)
T ss_dssp             ---HHTTSSHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccccchhhHHHH----------------------------------------HhhhcccccccccccchhhHHHH
Confidence               01111111111111                                        112111110  245667777888


Q ss_pred             HHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhh
Q 007454          445 INWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ  524 (603)
Q Consensus       445 ~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~  524 (603)
                      .++|.+.|.++      |   +.++++.     ++++.+...+..   -..++.++|+++.||.+..|...         
T Consensus       285 ~~~l~~~L~~~------~---~~~~~~~-----~~~~~~~~~~~~---~~~~l~~~L~~~~gi~v~pg~~~---------  338 (363)
T PF00155_consen  285 RDLLREALEEI------G---ITVLPPE-----AGFFLWVRLDPN---DAEELAQELLEEYGILVRPGSYF---------  338 (363)
T ss_dssp             HHHHHHHHHHT------T---SEEEHHS-----BSSEEEEEESHH---HHHHHHHHHHHHHTEEEEEGGGG---------
T ss_pred             HHHHHHHHHHh------h---hheeecc-----CccEEEEEcccc---hHHHHHHHHHHhCCEEEEecCCC---------
Confidence            88889999775      2   4555542     455555544421   12356777887779999877332         


Q ss_pred             hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                                                .. .+.||+|+ -..+.|+++++++.|
T Consensus       339 --------------------------~~-~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  339 --------------------------GV-PGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             --------------------------TS-TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             --------------------------CC-CCEEEEEe-ccCCHHHHHHHHhhC
Confidence                                      11 36899999 889999999998865

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.06  E-value=1.5e-07  Score=103.37  Aligned_cols=225  Identities=13%  Similarity=0.074  Sum_probs=136.0

Q ss_pred             HHHHHHHHhhcCCCCCCee-EEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRG-LFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~-Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~  297 (603)
                      .++|++.|...   .++.. +++-|......|.+.|    ++.+ ++|+++|+++++|-+|. .+..  +...+.....|
T Consensus       186 ~~~l~~~l~~~---~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~p  262 (423)
T PRK05964        186 LDALEALLEKH---AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSP  262 (423)
T ss_pred             HHHHHHHHHhC---CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCC
Confidence            66777777531   12454 4444546777898875    4444 47899999999999874 2221  11112234579


Q ss_pred             cEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC--C
Q 007454          298 DFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT--N  374 (603)
Q Consensus       298 Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT--~  374 (603)
                      |++++|  |.+|+ . -.+|+++.++++++.+.+...++..                               +-.+|  .
T Consensus       263 Di~~~~--K~l~g-G~~p~~av~~~~~i~~~~~~~~~~~~~-------------------------------~~~~T~~~  308 (423)
T PRK05964        263 DIMCLS--KGLTG-GYLPLAATLCTAEIFEAFYSDDRAKAF-------------------------------MHSPSYTA  308 (423)
T ss_pred             Ceeeee--hhhhc-CcccceEEEEcHHHHHhhhcCCccccc-------------------------------ccCCCCCc
Confidence            999887  98763 3 2488888888877655321000100                               01222  2


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      |..+.++..                                        ++++.+.+   +.+.++++.+.++|.+.|.+
T Consensus       309 np~~~aaa~----------------------------------------a~l~~l~~---~~~~~~~~~~g~~l~~~l~~  345 (423)
T PRK05964        309 NPLACAAAN----------------------------------------ASLDLFED---EPVLERVAALSAGLAEGLEP  345 (423)
T ss_pred             CHHHHHHHH----------------------------------------HHHHHHHh---cCHHHHHHHHHHHHHHHHHh
Confidence            333322211                                        46776654   34567888889999999887


Q ss_pred             CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          455 LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       455 L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      +.     +.|.|.   . . ...|.++.|.+.+.+.... ...+.+.+.++||.++..                      
T Consensus       346 l~-----~~~~i~---~-v-rg~Gl~~~i~l~~~~~~~~-~~~l~~~l~~~Gv~v~~~----------------------  392 (423)
T PRK05964        346 FR-----DLPGVA---D-V-RVLGAIGAVELDRPVLERD-GPALRAFALERGVLLRPL----------------------  392 (423)
T ss_pred             hc-----cCCCeE---E-e-ecccEEEEEEeccCcchhH-HHHHHHHHHHCCeEEEec----------------------
Confidence            73     123331   1 0 1357788888865321111 223334344577776410                      


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                         ..++|+++++++|.+|||++++.+++.+++
T Consensus       393 -------------------~~~lR~~p~l~~t~edId~~v~~l~~al~~  422 (423)
T PRK05964        393 -------------------GNTIYLMPPYIITAEELDRITDAIVEVADE  422 (423)
T ss_pred             -------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHhh
Confidence                               148999999999999999999999998854

>PLN02242 methionine gamma-lyase

Probab=99.05  E-value=2e-08  Score=110.15  Aligned_cols=93  Identities=18%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|+++|..     .+|+++.+...+|.||.+.|++.| ++|+++|++|++|.++. +-   .++...++.|+++.|+
T Consensus       151 d~e~l~~~i~~-----~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~-~~---~~~~~~~g~divv~S~  221 (418)
T PLN02242        151 DLEAVKKAVVP-----GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFA-PM---VLSPARLGADVVVHSI  221 (418)
T ss_pred             CHHHHHHhcCc-----CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCC-cc---CCCHHHcCCcEEEEeC
Confidence            67888888753     148999999999999999999855 58999999999999874 32   2444456899999999


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      .|+||+ +..  .|+++.+++.+..+
T Consensus       222 SK~l~g-~g~~~gG~iv~~~~li~~l  246 (418)
T PLN02242        222 SKFISG-GADIIAGAVCGPAELVNSM  246 (418)
T ss_pred             ccccCC-CCCceEEEEEcCHHHHHHH
Confidence            999984 322  47777666554433

>PRK07777 aminotransferase; Validated

Probab=99.03  E-value=4.7e-08  Score=105.63  Aligned_cols=114  Identities=15%  Similarity=0.148  Sum_probs=78.9

Q ss_pred             HHHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEe
Q 007454          205 TSEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILID  278 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvD  278 (603)
                      .++..|+++..++.+..  +..++.++|++.+..      ++++|.++..+|.||..+|.+    ++++|+++++++++|
T Consensus       125 ~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~D  198 (387)
T PRK07777        125 VIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP------RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITD  198 (387)
T ss_pred             HHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc------ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEe
Confidence            34556888887777521  245889999988753      578888888899999999854    235689999999999


Q ss_pred             ccccC----CCCCCCCC-CC-CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          279 ACALG----PKDMDSFG-LS-LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       279 Aaq~~----~~~m~~ld-ls-~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      -+...    +....++. +. ..+.++++.|+.|.||.  .|  +|+++.++.+++
T Consensus       199 e~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~--~GlRiG~~~~~~~l~~  252 (387)
T PRK07777        199 EVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNV--TGWKIGWACGPAPLIA  252 (387)
T ss_pred             ccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccC--cCceeEEEecCHHHHH
Confidence            86431    21001221 11 13468999999999994  37  688887665543

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.02  E-value=2.5e-07  Score=100.59  Aligned_cols=221  Identities=12%  Similarity=0.115  Sum_probs=138.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~  296 (603)
                      +.++|++.|...   .+++..|.+-.+.+.+|.+.|    ++.+ ++|+++|+++++|-++.+    |+ +..++...+.
T Consensus       172 d~~~le~~l~~~---~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~~~  247 (401)
T TIGR01885       172 NLEALEEALEDH---GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHENVK  247 (401)
T ss_pred             CHHHHHHHHHhc---CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcCCC
Confidence            578888888632   135677777777788999998    7755 589999999999997542    22 1123333467


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ||++++|  |-+|+.-.-+|+++.++++++.+.+...+.+                                + .|  +.
T Consensus       248 ~di~~~g--K~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t--------------------------------~-~~--~p  290 (401)
T TIGR01885       248 PDIVLLG--KALSGGVYPVSAVLADDDVMLTIKPGEHGST--------------------------------Y-GG--NP  290 (401)
T ss_pred             CCEEEee--ccccCCCCCcEEEEEcHHHHhhccCCCCCCC--------------------------------C-CC--CH
Confidence            9999877  9776300126888888776654542110000                                0 11  11


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ....+.                                        .++|+.+..-   .+.++.+.+.+++.++|.++.
T Consensus       291 ~~~~aa----------------------------------------~a~L~~i~~~---~l~~~~~~~~~~~~~~L~~l~  327 (401)
T TIGR01885       291 LACAVA----------------------------------------VAALEVLEEE---KLAENAEKLGEIFRDQLKKLP  327 (401)
T ss_pred             HHHHHH----------------------------------------HHHHHHHHhc---cHHHHHHHHHHHHHHHHHhcc
Confidence            111111                                        1577766542   455788889999999999874


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                      +      +++.-+     ..+|.+..+-+.+........++..+| .++||.+..+                        
T Consensus       328 ~------~~~~~~-----~g~g~~~~i~~~~~~~~~~~~~l~~~l-~~~Gv~v~~~------------------------  371 (401)
T TIGR01885       328 K------PIITEV-----RGRGLLNAIVIDESKTGRTAWDLCLKL-KEKGLLAKPT------------------------  371 (401)
T ss_pred             C------CceeEE-----eecCeeEEEEeccCcchhHHHHHHHHH-HhCCEEEEec------------------------
Confidence            3      222111     125778887775432111122334444 4668876411                        


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                      ....+|+++.+..|.+||+++++.|++++|
T Consensus       372 ----------------~~~~lRi~p~l~~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       372 ----------------HGNIIRLAPPLVITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             ----------------CCCEEEEeCCccCCHHHHHHHHHHHHHHhC
Confidence                            124899999999999999999999999875

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.02  E-value=1.3e-07  Score=102.35  Aligned_cols=135  Identities=13%  Similarity=0.147  Sum_probs=91.7

Q ss_pred             HHHHcCCCCC-cEEEe-ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc
Q 007454          179 IMDFLNISEN-DYVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT  256 (603)
Q Consensus       179 Ia~~lna~~~-e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T  256 (603)
                      ++..+++.|. +++.. .+..+   ....+...|++++.+++++.+..++.++|++++..      +|++|..   +|.+
T Consensus        62 ~l~al~~~pGd~Viv~~~t~~~---~~~~~~~~G~~~v~vd~d~~~~~~d~~~le~~i~~------~tk~Iip---~~~~  129 (376)
T TIGR02379        62 AALLLDIQPGDEVIMPSYTFVS---TANAFVLRGAKIVFVDIRPDTMNIDETLIESAITH------RTKAIVP---VHYA  129 (376)
T ss_pred             HHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc------CceEEEE---eCCC
Confidence            3445677774 44432 22222   23344567999999999865578999999998863      5788753   4579


Q ss_pred             cccccHHH-HHHHHhCCcEEEEeccccCCCCCCCCCCCCCCC--cEEEEccccc--CC-CCCCceEEEEEe-CCCCcCcC
Q 007454          257 GARYPYLW-MRIAQENDWHILIDACALGPKDMDSFGLSLVRP--DFLICSFYQI--FG-ENPSGFGCLFVK-KSTVPILV  329 (603)
Q Consensus       257 G~~~pl~~-i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~--Dflv~S~hK~--fG-~~P~G~G~L~vk-k~~~~~L~  329 (603)
                      |...|++. +++|+++|++|+.|++|..+.   ..+-...+.  |+.+||||+.  +. + +. .|+++.+ ++..+.++
T Consensus       130 G~~~d~~~I~~la~~~~i~vIeDaa~~~g~---~~~~~~~g~~~~~~~fSf~~~K~l~~g-~~-gG~v~~~~~~~~~~~~  204 (376)
T TIGR02379       130 GVACDMDTIMALANKHQLFVIEDAAQGVMS---TYKGRALGSIGHLGTFSFHETKNYTSG-GE-GGALLINDQAFIERAE  204 (376)
T ss_pred             CCccCHHHHHHHHHHCCCEEEEECccccCC---ccCCcccCCCCCEEEEeCCCCCcCccc-CC-ceEEEECCHHHHHHHH
Confidence            99999984 468999999999999998775   233333333  9999999973  32 1 33 4666665 44555555


Q ss_pred             C
Q 007454          330 D  330 (603)
Q Consensus       330 p  330 (603)
                      +
T Consensus       205 ~  205 (376)
T TIGR02379       205 I  205 (376)
T ss_pred             H
Confidence            3

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.02  E-value=4.9e-08  Score=102.24  Aligned_cols=215  Identities=15%  Similarity=0.186  Sum_probs=146.2

Q ss_pred             eeEEEEeCccccccccccHH-HHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          244 RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~-~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      ...|.+.+-.-.+|+.+|-. ++.    .+..+++|+++.+..  .++|+++  .|.+.++..|.+|  |.|++++++|+
T Consensus       145 ~ayv~~~~NeTi~Gv~v~~~p~~~----~~~~~v~D~SS~ils--r~iDvsk--~dviyagaQKnlG--paGltvvIvr~  214 (365)
T COG1932         145 DAYVHFCWNETISGVEVPELPDIG----SDGLLVADASSAILS--RPIDVSK--YDVIYAGAQKNLG--PAGLTVVIVRP  214 (365)
T ss_pred             ccEEEEecCCcccceEccCCCCCC----CCceEEEecccHHhc--CCCChhH--cceEEEehhhccC--ccceEEEEEcH
Confidence            56688888888889888731 221    127899999877766  5899986  6999999999999  99999999999


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      ++++.+++.....+.       . +  ..             ..  +...|-|.+.++++..             +.   
T Consensus       215 ~~l~r~~~~~~P~if-------~-y--~~-------------~~--~~~s~yNTPptfa~y~-------------~~---  253 (365)
T COG1932         215 DLLERAESYTLPSIF-------D-Y--LT-------------HA--DNGSMYNTPPTFAWYL-------------LG---  253 (365)
T ss_pred             HHHhcccccCCchHh-------h-c--hh-------------hh--ccCCccCCcHHHHHHH-------------HH---
Confidence            998777643111110       0 0  00             00  3466777777766541             11   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC-CC-CCCCC
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK-IR-FDRGP  479 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~-~~-~~rg~  479 (603)
                                           ..++++.+. |++.+.+|.+.=.+.|++-+.+-.           .|.+. .+ .+.-=
T Consensus       254 ---------------------lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~-----------fy~~~v~~~~RS~m  301 (365)
T COG1932         254 ---------------------LVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSD-----------FYRNLVAKANRSRM  301 (365)
T ss_pred             ---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCC-----------ccccccchhhccce
Confidence                                 578888877 699999999999999999987631           12211 11 23345


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      .|.|.+.+.+   ++...|+++ +++|...=.|                                      ....|.+|+
T Consensus       302 nV~f~~~~~~---ld~~fv~ea-e~~gl~~lkG--------------------------------------hr~vgGmRa  339 (365)
T COG1932         302 NVTFTLVDAE---LDKGFVAEA-EAAGLIYLKG--------------------------------------HRSVGGLRA  339 (365)
T ss_pred             eEEEEcCcHH---HHHHHHHHH-HHcCCceecc--------------------------------------ccCCCceee
Confidence            7888887532   455555444 4444432222                                      122356999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          560 SLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+.---..|||++|++|+++|...
T Consensus       340 siynA~~~e~veaL~~fm~~f~~~  363 (365)
T COG1932         340 SIYNAVPLEDVEALTDFMDWFEET  363 (365)
T ss_pred             eeecCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998654

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.02  E-value=5.5e-08  Score=104.97  Aligned_cols=124  Identities=14%  Similarity=0.187  Sum_probs=86.2

Q ss_pred             HHcCCCCC-cEEEe-ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc
Q 007454          181 DFLNISEN-DYVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA  258 (603)
Q Consensus       181 ~~lna~~~-e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~  258 (603)
                      ..+++.+. +++.+ +...+   ....++..|++++.++++..+..++.++|++++..      +++++.+.   |.+|.
T Consensus        64 ~~~~~~~Gd~Viv~~~t~~~---~~~~~~~~G~~~v~~d~d~~~~~~d~~~le~~i~~------~tk~i~~~---~~~G~  131 (375)
T PRK11706         64 LLLDIQPGDEVIMPSYTFVS---TANAFVLRGAKIVFVDIRPDTMNIDETLIEAAITP------KTRAIVPV---HYAGV  131 (375)
T ss_pred             HHhCCCCCCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhcCC------CCeEEEEe---CCCCC
Confidence            34566664 45443 22222   34455678999999999854557899999998863      57777654   46999


Q ss_pred             cccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC--CCcEEEEccc--ccCCCCCCce-EEEEEeC
Q 007454          259 RYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV--RPDFLICSFY--QIFGENPSGF-GCLFVKK  322 (603)
Q Consensus       259 ~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~--~~Dflv~S~h--K~fG~~P~G~-G~L~vkk  322 (603)
                      ..+++.+ ++|+++|+.|+.|++|..+.   ..+-...  -.|+-++|||  |.++  + |. |++++++
T Consensus       132 ~~~~~~i~~la~~~~i~vIeD~a~a~g~---~~~~~~~g~~~~~~~~Sf~~~K~l~--~-g~gG~~~~~~  195 (375)
T PRK11706        132 ACEMDTIMALAKKHNLFVVEDAAQGVMS---TYKGRALGTIGHIGCFSFHETKNYT--A-GEGGALLIND  195 (375)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECcccccc---ccCCeeeecCcCEEEEeCCCCcccc--c-cCCeEEEECC
Confidence            9999855 68999999999999987774   2221111  2599999999  9998  5 44 4455543

>PRK09265 aminotransferase AlaT; Validated

Probab=99.01  E-value=7e-08  Score=105.00  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=90.7

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCC-ccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWP-RLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~g~  224 (603)
                      ..|+.|++++      ++++++++++..+. ++..                     ....++..|.++..++.+.. +..
T Consensus        76 ~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~  155 (404)
T PRK09265         76 SARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWF  155 (404)
T ss_pred             HHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCC
Confidence            6888899887      78889998765432 1211                     12334456777777665422 346


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEecccc----CCCCCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACAL----GPKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~----~~~~m~~ldls~~~  296 (603)
                      ++.++|++.+..      +++++.+...+|.||.++|   ++.+ +.|+++|+++++|-+-.    .+..  ...+..+.
T Consensus       156 ~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~  227 (404)
T PRK09265        156 PDLDDIRSKITP------RTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAV--HISIASLA  227 (404)
T ss_pred             CCHHHHHHhccc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCC--cCCHHHcC
Confidence            888999888753      5889898899999999999   5533 57899999999997621    1210  11111111


Q ss_pred             Cc--E-EEEcccccCCCCCCc--eEEEEEe
Q 007454          297 PD--F-LICSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       297 ~D--f-lv~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      .+  . ++-|+-|.||.  .|  +|.++..
T Consensus       228 ~~~~vi~~~S~SK~~~~--pGlRiG~~v~~  255 (404)
T PRK09265        228 PDLLCVTFNGLSKAYRV--AGFRVGWMVLS  255 (404)
T ss_pred             CCceEEEEecchhhccC--cccceEEEEEe
Confidence            22  3 45677899984  26  6888863

>PRK10534 L-threonine aldolase; Provisional

Probab=99.00  E-value=2.6e-08  Score=105.15  Aligned_cols=108  Identities=10%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC-
Q 007454          211 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK-  285 (603)
Q Consensus       211 a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~-  285 (603)
                      +++..++++ .++.++.++|++++.+++....+++++.+.  ++.||.++|.+.+    ++|+++|++|++|.+..... 
T Consensus        98 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~--np~~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~  174 (333)
T PRK10534         98 IQPQPIDAA-ADGTLPLDKVAAKIKPDDIHFARTRLLSLE--NTHNGKVLPREYLKQAWEFTRERNLALHVDGARIFNAV  174 (333)
T ss_pred             ceEEeecCC-CCCCCCHHHHHHhhcccCcCcccceEEEEe--cCCCCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHH
Confidence            566666655 356788999999885311111147888877  5668999999755    35788999999998633211 


Q ss_pred             ---CCCCC-CCCCCCCcEEEEcccccCCCCCCceE-EEEEeCCCCc
Q 007454          286 ---DMDSF-GLSLVRPDFLICSFYQIFGENPSGFG-CLFVKKSTVP  326 (603)
Q Consensus       286 ---~m~~l-dls~~~~Dflv~S~hK~fG~~P~G~G-~L~vkk~~~~  326 (603)
                         . .++ ++. ..+|.+++||.|.||. |  +| +++..+++++
T Consensus       175 ~~~~-~~~~~~~-~~~~~~~~s~SK~~~~-~--~G~~~~~~~~~i~  215 (333)
T PRK10534        175 VAYG-CELKEIT-QYCDSFTICLSKGLGT-P--VGSLLVGNRDYIK  215 (333)
T ss_pred             HHcC-CCHHHHH-hcCCEEEEEeEcCCCC-c--ccceEEcCHHHHH
Confidence               0 011 111 1357777899999995 4  67 4555555543

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=98.99  E-value=2.9e-08  Score=107.27  Aligned_cols=181  Identities=15%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-...|+.|+++....+.+                 -|.-+.|.....-|.. ..+++.-+.+++.++||++|+++.-+
T Consensus        27 aSEN~~Sp~v~~al~S~l~n-----------------kyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~an   89 (399)
T PF00464_consen   27 ASENYMSPAVREALGSDLTN-----------------KYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYAN   89 (399)
T ss_dssp             TT-----HHHHHHHTSGGGG-----------------S-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE
T ss_pred             CcccccCHHHHHHhCCccee-----------------eccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEE
Confidence            56667899999987654432                 1222445444333333 46788889999999999998877332


Q ss_pred             c--cC--chHHHHHHHHHH-------------------------------cCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          194 Y--ES--EAVEAMIRTSEK-------------------------------RGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       194 ~--es--~sV~~~~~~a~~-------------------------------~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      -  .|  ++-..+...+-+                               +.+++...+++..++.||.+++++++... 
T Consensus        90 vqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-  168 (399)
T PF00464_consen   90 VQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEH-  168 (399)
T ss_dssp             ---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH-
T ss_pred             eecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhc-
Confidence            1  11  111111111112                               23456666677668899999999998753 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                          +++|+.+...+.  =..+|++.++ +|.+.|+++++|+++.+|-     --.||+    .+|++++|-||-|.+ |
T Consensus       169 ----kPklIi~G~S~y--~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~----~ADvvt~sThKtl~G-P  237 (399)
T PF00464_consen  169 ----KPKLIICGASSY--PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFP----YADVVTGSTHKTLRG-P  237 (399)
T ss_dssp             ------SEEEEE-SST--SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCC----TSSEEEEESSGGG-S-S
T ss_pred             ----CCCEEEECchhc--cCccCHHHHHHHHHhcCcEEEecccccccceehheecCccc----cceEEEeeccccccc-c
Confidence                578998887652  3457777775 7899999999999875531     013553    389999999997665 8


Q ss_pred             CceEEEEEeCCCC
Q 007454          313 SGFGCLFVKKSTV  325 (603)
Q Consensus       313 ~G~G~L~vkk~~~  325 (603)
                      .| |+++.+++..
T Consensus       238 rg-giI~~~~~~~  249 (399)
T PF00464_consen  238 RG-GIILTNKGSK  249 (399)
T ss_dssp             S--EEEEES-SEE
T ss_pred             Cc-eEEEEcCCcc
Confidence            86 8888886553

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PRK06836 aspartate aminotransferase; Provisional

Probab=98.99  E-value=1.1e-07  Score=103.24  Aligned_cols=146  Identities=11%  Similarity=0.155  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHcC------CCCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCCcc
Q 007454          172 ESAMKKRIMDFLN------ISENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       172 ~~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      +...|+.|+++++      +++++++++..+ +++.                     .....++..|++++.++.+..++
T Consensus        75 ~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~  154 (394)
T PRK06836         75 YPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTF  154 (394)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccC
Confidence            3468888888875      578888775432 1111                     12334567899999999874336


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHh------CCcEEEEecccc----CCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQE------NDWHILIDACAL----GPKDMDS  289 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e------~g~~vlvDAaq~----~~~~m~~  289 (603)
                      .++.++|++++..      +++++.+++.+|.||..+|.+.+    ++|++      +|+++++|.+-.    .+.. .+
T Consensus       155 ~~d~~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~-~~  227 (394)
T PRK06836        155 QPDLDALEAAITP------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAE-VP  227 (394)
T ss_pred             cCCHHHHHhhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCC-CC
Confidence            7899999998853      58899999999999999998643    35677      899999998632    1211 11


Q ss_pred             CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          290 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       290 ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      .-++...-.+++.|+-|.||.|--.+|++++.+..
T Consensus       228 ~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~  262 (394)
T PRK06836        228 YIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEM  262 (394)
T ss_pred             ChHHccCcEEEEecchhhccCcceeeEEEecCHHH
Confidence            11223344688899999998532238888876554

>PRK12414 putative aminotransferase; Provisional

Probab=98.98  E-value=1.1e-07  Score=102.80  Aligned_cols=151  Identities=11%  Similarity=0.171  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHcCCC--C-CcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccc
Q 007454          170 GLESAMKKRIMDFLNIS--E-NDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~--~-~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      ++.+.+++.+++++|++  + ++++.+.... ++                     ......++..|.++..+++++.+..
T Consensus        70 ~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~  149 (384)
T PRK12414         70 ALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFR  149 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccc
Confidence            45566777777777874  3 4676543221 11                     1122334567899999988755667


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc----CCCCCCCC-CCCC-
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL----GPKDMDSF-GLSL-  294 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~----~~~~m~~l-dls~-  294 (603)
                      ++.++|++.+..      +++++.++.-+|.||.+++-+    ++++|+++|+++++|.+-.    -+....++ .+.. 
T Consensus       150 ~d~~~l~~~l~~------~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~  223 (384)
T PRK12414        150 VNWDEVAAAITP------RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL  223 (384)
T ss_pred             cCHHHHHhhcCc------ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc
Confidence            899999988853      588999999999999998754    2346789999999998732    12110111 1111 


Q ss_pred             CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          295 VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      .+--+++.||-|.||.  .|  +|.+++.+++++.+
T Consensus       224 ~~~~i~~~SfSK~~~~--pGlRiG~~v~~~~l~~~l  257 (384)
T PRK12414        224 AERSVIVSSFGKSYHV--TGWRVGYCLAPAELMDEI  257 (384)
T ss_pred             cCcEEEEecccccccC--ccceEEEEecCHHHHHHH
Confidence            1123899999999984  37  68888776654433

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=98.97  E-value=1.6e-07  Score=99.86  Aligned_cols=182  Identities=11%  Similarity=0.106  Sum_probs=116.7

Q ss_pred             CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +.++||++..+ +.++.+++++.+.+...                     +. .  .|..   .-..+.|++|++++|++
T Consensus        19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~--~Y~~---~g~~~lr~~ia~~~~~~   71 (337)
T PRK03967         19 YRIWLDKNENPFDLPEELKEEIFEELKRV---------------------PF-N--RYPH---ITSDPLREAIAEFYGLD   71 (337)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHhhcC---------------------cc-c--cCCC---CCHHHHHHHHHHHhCcC
Confidence            46999999877 46677888766532110                     00 0  0100   01247999999999999


Q ss_pred             CCcEEEeccCc-hHHH-------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454          187 ENDYVYDYESE-AVEA-------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL  246 (603)
Q Consensus       187 ~~e~vf~~es~-sV~~-------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L  246 (603)
                      +++++++..+. ++..                   ....++..|.++..++.+ .+..++.++|++.+.       ++++
T Consensus        72 ~~~I~~t~G~~~~l~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~~~-------~~~~  143 (337)
T PRK03967         72 AENIAVGNGSDELISYLVKLFEGKHIVITPPTFGMYSFYAKLNGIPVIDVPLK-EDFTIDGERIAEKAK-------NASA  143 (337)
T ss_pred             cceEEEcCCHHHHHHHHHHHhCCCeEEEeCCChHHHHHHHHHcCCeEEEeecC-CCCCcCHHHHHHhcc-------CCCE
Confidence            99998764322 1111                   122345678899888886 345788888887542       4678


Q ss_pred             EEEeCccccccccccHHHHH-HHHhCCcEEEEeccc--cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          247 FVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACA--LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       247 v~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +.++.-+|.||..+|.+.+. ++ +++.++++|.+-  +.+..+.++ ++...-=+++.|+=|.||.+---+|++++.++
T Consensus       144 v~~~~P~NPtG~~~~~~~l~~i~-~~~~~ii~De~y~~~~~~~~~~~-~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~  221 (337)
T PRK03967        144 VFICSPNNPTGNLQPEEEILKVL-ETGKPVVLDEAYAEFSGKSLIGL-IDEYPNLILLRTFSKAFGLAGIRAGYAIANEE  221 (337)
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHH-hcCCEEEEECchhhhcccchHHH-HhhCCCEEEEecchHhhcchhhhheeeecCHH
Confidence            88899999999999998665 56 479999999863  222211111 11111126678999999942122888887655


Q ss_pred             CCc
Q 007454          324 TVP  326 (603)
Q Consensus       324 ~~~  326 (603)
                      +++
T Consensus       222 ~i~  224 (337)
T PRK03967        222 IID  224 (337)
T ss_pred             HHH
Confidence            443

>PLN00175 aminotransferase family protein; Provisional

Probab=98.96  E-value=1.4e-07  Score=103.27  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEec
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDA  279 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDA  279 (603)
                      ..++..|++++.++++.++..++.++|++.+..      +++++.++.-+|.||.+++.+.    +++|++++++|++|-
T Consensus       154 ~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~------~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De  227 (413)
T PLN00175        154 ATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTS------KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDE  227 (413)
T ss_pred             HHHHHcCCEEEEEECCcccCCCCHHHHHHhcCc------CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEec
Confidence            345667999999988633467889999998863      5889999999999999998653    346889999999998


Q ss_pred             cccC---CCCCCC-CCCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          280 CALG---PKDMDS-FGLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       280 aq~~---~~~m~~-ldls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      +-..   .....+ ..+.. ....+++.||=|.||.+---+|.++..+.++.
T Consensus       228 ~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~  279 (413)
T PLN00175        228 VYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW  279 (413)
T ss_pred             ccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHH
Confidence            6311   110011 11211 23457889999999852112798887765543

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=98.95  E-value=1.7e-07  Score=101.93  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHcCC------CCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccC-Ccc
Q 007454          173 SAMKKRIMDFLNI------SENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSW-PRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~lna------~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~-~~g  223 (603)
                      .+.|+.|++++|.      ++++++++..+ +++                     ......++..|+++..++++. .++
T Consensus        76 ~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  155 (403)
T TIGR01265        76 LAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDW  155 (403)
T ss_pred             HHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCC
Confidence            4689999999984      56778765321 111                     112334566788888887642 245


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---H-HHHHHHhCCcEEEEecccc----CCCCCCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---L-WMRIAQENDWHILIDACAL----GPKDMDSFGLSLV  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~-~i~~a~e~g~~vlvDAaq~----~~~~m~~ldls~~  295 (603)
                      .++.+++++++..      +++++.+++.+|.||..+|.   + ++..|+++|+++++|.+-.    .+..  ...+..+
T Consensus       156 ~~d~~~l~~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~  227 (403)
T TIGR01265       156 EIDLDGLEALADE------KTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAP--FIPMASF  227 (403)
T ss_pred             ccCHHHHHHHhCc------CccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCC--ccchhhh
Confidence            7899999888753      58899999999999999984   4 3357899999999999732    1110  1122222


Q ss_pred             CC---cEEEEcccccCCCCCCceEEEEEe
Q 007454          296 RP---DFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       296 ~~---Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ..   =.++.|+=|.||.|--.+|.+++.
T Consensus       228 ~~~~~vi~~~S~SK~~~~pGlRiG~~v~~  256 (403)
T TIGR01265       228 ASIVPVLSLGGISKRWVVPGWRLGWIIIH  256 (403)
T ss_pred             ccCCcEEEEeecccccCCCcceEEEEEEe
Confidence            22   256679999988531228888875

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=98.95  E-value=1.1e-06  Score=95.12  Aligned_cols=94  Identities=15%  Similarity=0.231  Sum_probs=62.7

Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHH---HH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYL---WM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~---~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~  296 (603)
                      .+.++|++.|..      ++++|.+...+|.+| ..+|-+   .+ ++|+++|+++++|-++.+ +..  +...+.....
T Consensus       163 ~d~~~l~~~l~~------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~  236 (389)
T PRK01278        163 GDIEALKAAITP------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVT  236 (389)
T ss_pred             CCHHHHHHhhCC------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCC
Confidence            367888888752      578888887888899 455544   33 368999999999998662 221  1122222346


Q ss_pred             CcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          297 PDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      ||.++  +=|.+|  + |  +|+++.+++.++.+.
T Consensus       237 pdi~t--~sK~l~--~-G~~ig~~~~~~~~~~~~~  266 (389)
T PRK01278        237 PDIMA--VAKGIG--G-GFPLGACLATEEAAKGMT  266 (389)
T ss_pred             CCEEE--Eehhcc--C-CcceEEEEEcHHHHhccC
Confidence            88765  459887  2 5  899998877655443

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=98.95  E-value=6.2e-08  Score=109.03  Aligned_cols=139  Identities=17%  Similarity=0.233  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHc------CCCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCC-cc
Q 007454          173 SAMKKRIMDFL------NISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l------na~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      ...|+.|++++      ++++++++.+..+. ++..                     ....++..|++++.++.+.. +.
T Consensus       188 ~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~  267 (517)
T PRK13355        188 FSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEW  267 (517)
T ss_pred             HHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCC
Confidence            47899999998      78889997764321 2211                     12334566888888877532 34


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccc----cCCCCCCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACA----LGPKDMDSFGLSLV  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq----~~~~~m~~ldls~~  295 (603)
                      .++.++|++.+..      +|+++++..-+|.||.++|.+    ++.+|++++++|++|-+-    +-++.  ...+..+
T Consensus       268 ~~d~~~l~~~~~~------~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~--~~s~~~~  339 (517)
T PRK13355        268 YPDIDDIRSKITS------RTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE--HTSIASL  339 (517)
T ss_pred             CCCHHHHHHhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC--cccHHHh
Confidence            6889999988853      688888888899999999954    335689999999999862    12220  1122223


Q ss_pred             CCcE--E-EEcccccCCCCCCc--eEEEEEe
Q 007454          296 RPDF--L-ICSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       296 ~~Df--l-v~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      .+|.  + +.|+-|.||  ..|  +|.+++.
T Consensus       340 ~~~~~vi~~~S~SK~~~--~~G~RiG~~i~~  368 (517)
T PRK13355        340 APDLFCVTFSGLSKSHM--IAGYRIGWMILS  368 (517)
T ss_pred             CCCCeEEEEecchhhcc--CcccceEEEEee
Confidence            3453  2 368899998  447  7888864

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=98.95  E-value=4.7e-07  Score=98.64  Aligned_cols=215  Identities=13%  Similarity=0.136  Sum_probs=133.3

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.|.+      ++.+|.+-.+..+.|.+.|    ++.+ ++|+++|+++++|-+|.+ |..  |...+.-...|
T Consensus       168 d~~~l~~~l~~------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~P  241 (395)
T PRK03715        168 DIASVEKLITD------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEP  241 (395)
T ss_pred             hHHHHHHHcCC------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCC
Confidence            46777777742      5777777778888999887    7755 479999999999998763 110  10111123469


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |+++++  |-+|. .--+|++++++++.. +.+...+++                                + .|  |  
T Consensus       242 Di~t~g--K~lg~-G~p~~av~~~~~i~~-~~~~~~~~T--------------------------------~-~g--~--  280 (395)
T PRK03715        242 DIMTLG--KGIGG-GVPLAALLAKAEVAV-FEAGDQGGT--------------------------------Y-NG--N--  280 (395)
T ss_pred             ceeeeh--hhhhC-CcceEEEEEcccccc-ccCCCcCCC--------------------------------C-CC--C--
Confidence            998886  87653 122889999888742 221111111                                0 11  1  


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                       +++++            +++                         ++|+.+++   +.+.++++.+.++|.++|+++..
T Consensus       281 -pl~~a------------aal-------------------------a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~  319 (395)
T PRK03715        281 -PLMTA------------VGV-------------------------AVISQLLA---PGFLEGVRARGEYLKEKLLELSE  319 (395)
T ss_pred             -HHHHH------------HHH-------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhh
Confidence             11111            011                         46776654   45677888899999999987642


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcC---CcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRE---NISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~---gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      ..  +...|        ..+|.++.+-+.+..+     ..+.+.+.+.   ||.++..                      
T Consensus       320 ~~--~i~~v--------rG~Glm~~i~l~~~~~-----~~~~~~~~~~~~~Gi~~~~~----------------------  362 (395)
T PRK03715        320 ER--GLEGE--------RGEGLLRALLLGKDIG-----PQIVEKARDMQPDGLLLNAP----------------------  362 (395)
T ss_pred             cC--CcCeE--------EcceeEEEEEecCchH-----HHHHHHHHhccCCCEEEeec----------------------
Confidence            11  11111        1357888888865211     2234444444   7765310                      


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                        ...+||+++.+..|.+||+++++.|.+.++.
T Consensus       363 ------------------~~~~lR~~p~l~~t~~ei~~~~~~l~~~l~~  393 (395)
T PRK03715        363 ------------------RPNLLRFMPALNVTTEEIDQMIAMLRSVLDK  393 (395)
T ss_pred             ------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                              0148999999999999999999999988764

>PRK07050 cystathionine beta-lyase; Provisional

Probab=98.95  E-value=2.7e-08  Score=108.27  Aligned_cols=101  Identities=11%  Similarity=0.014  Sum_probs=74.2

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      ++..|+++..++..      +.++|++.|.      ++|+||.+...+|.+|.+.+++.| ++|+++|+.|++|+++..|
T Consensus       125 ~~~~Gi~v~~vd~~------~~~~l~~~i~------~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~  192 (394)
T PRK07050        125 ARDFGITVRFYDPL------IGAGIADLIQ------PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAG  192 (394)
T ss_pred             HHhcCeEEEEECCC------CHHHHHHhcC------CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccc
Confidence            34456666555432      2466777775      368999999999999999999966 5899999999999998887


Q ss_pred             CCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKK  322 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk  322 (603)
                      ....++   .+++|+++.|+.|++++ ..+  .|+++.++
T Consensus       193 ~~~~~l---~~GaDi~v~S~tK~~~g-~~~~~gG~v~~~~  228 (394)
T PRK07050        193 LAFKPF---EHGVDISVQALTKYQSG-GSDVLMGATITAD  228 (394)
T ss_pred             cccCHH---HcCCeEEEEECCceecC-CCCeeEEEEEECC
Confidence            522233   35789999999999874 334  56566543

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=98.94  E-value=2.2e-07  Score=99.51  Aligned_cols=143  Identities=14%  Similarity=0.150  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCc-h-------------------HHHHHHHHHHcCCEEEEEeccCCc-cccCHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESE-A-------------------VEAMIRTSEKRGARVMSAEFSWPR-LRINSEKL  230 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~-s-------------------V~~~~~~a~~~Ga~V~~~~~~~~~-g~i~~~~L  230 (603)
                      ..+.|++|++++++++++++++..+. +                   -......++..|+++..++.+..+ ..++ +++
T Consensus        56 ~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~  134 (354)
T PRK06358         56 YLELRKRIASFEQLDLENVILGNGATELIFNIVKVTKPKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIV  134 (354)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHH
Confidence            35899999999999999998764321 1                   112234456678898888875222 3567 555


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc--C--CCCCCCCC-CCCCCCcEEE
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--G--PKDMDSFG-LSLVRPDFLI  301 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~--~--~~~m~~ld-ls~~~~Dflv  301 (603)
                      .+.+..      +++++.++.-+|.||..++.+    +++.|+++++++++|.+-.  .  +.....+. +....-=+++
T Consensus       135 ~~~~~~------~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~  208 (354)
T PRK06358        135 LEEIKE------EIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIII  208 (354)
T ss_pred             HHhhcc------CCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEE
Confidence            555532      478877777799999999965    3346789999999998631  1  11000111 1111112677


Q ss_pred             EcccccCCCCCCceEEEEEe
Q 007454          302 CSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vk  321 (603)
                      .|+=|.||.+-.-+|.+++.
T Consensus       209 ~S~SK~~gl~G~RiG~lv~~  228 (354)
T PRK06358        209 RAFTKFFAIPGLRLGYGLTS  228 (354)
T ss_pred             EechhhccCcchhheeeecC
Confidence            89999998532237777653

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=98.93  E-value=9.2e-07  Score=95.30  Aligned_cols=93  Identities=16%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.+.      +++.+|++-.+.+.+|.+.|    ++.+ ++|+++|+++++|.++.+ +..  +.+.......|
T Consensus       154 dl~~l~~~l~------~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~p  227 (375)
T PRK04260        154 DLNSVKALVN------KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEP  227 (375)
T ss_pred             CHHHHHHhcC------CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCC
Confidence            5677777664      25789999889999999877    5644 579999999999998642 211  11112233578


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      |.+  ++-|.+|  | |  +|+++.+++..+.+.
T Consensus       228 di~--t~sK~l~--~-G~~ig~~~~~~~~~~~~~  256 (375)
T PRK04260        228 DIF--TLAKGLA--N-GVPVGAMLAKSSLGGAFG  256 (375)
T ss_pred             CEE--Eeccccc--C-CcceEEEEEcHHHHhhcC
Confidence            954  7889887  3 4  899999887654443

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=98.93  E-value=1.6e-07  Score=100.87  Aligned_cols=147  Identities=11%  Similarity=0.148  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHc------CCCCCcEEEeccCc-hHHHH---------------------HHHHHHcCCEEEEEeccCCccc
Q 007454          173 SAMKKRIMDFL------NISENDYVYDYESE-AVEAM---------------------IRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       173 ~~aR~~Ia~~l------na~~~e~vf~~es~-sV~~~---------------------~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      ...|+.|++++      ++++++++.+..++ ++..+                     ...++..|.++..++.+ .+..
T Consensus        68 ~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~-~~~~  146 (368)
T PRK03317         68 VALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA-ADFT  146 (368)
T ss_pred             HHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC-CCCC
Confidence            47888999998      57888887654332 22221                     22344556666666553 3457


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCCCc-
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVRPD-  298 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~~D-  298 (603)
                      ++.++|++.+..     .+++++.+...+|.||..+|.+.+ ++++..++++++|-+...    +. +..+.+....++ 
T Consensus       147 ~d~~~l~~~~~~-----~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~~  220 (368)
T PRK03317        147 LDVDAAVAAIAE-----HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPRL  220 (368)
T ss_pred             CCHHHHHHHHhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCCE
Confidence            889999998863     246777788889999999999866 477777899999986431    21 011122111344 


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      +++.||-|.||. | |  +|+++..+++++.+
T Consensus       221 i~~~SfSK~~g~-~-GlRiG~~~~~~~~~~~l  250 (368)
T PRK03317        221 VVSRTMSKAFAF-A-GGRLGYLAAAPAVVDAL  250 (368)
T ss_pred             EEEEechhhhcc-c-hhhhhhhhCCHHHHHHH
Confidence            455699999984 2 6  58887766554433

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=98.93  E-value=1.1e-06  Score=94.94  Aligned_cols=149  Identities=14%  Similarity=0.253  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHHcC-------CEEEEEeccCC--------------------
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEKRG-------ARVMSAEFSWP--------------------  221 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~~G-------a~V~~~~~~~~--------------------  221 (603)
                      ....+..++++++.+.  ++++|... ++++...+..++..+       .+|......+.                    
T Consensus        81 ~~~~~la~~l~~~~~~--~~v~~~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~  158 (396)
T PRK02627         81 EPQEELAEKLVELSGM--DKVFFCNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFE  158 (396)
T ss_pred             HHHHHHHHHHHhhcCC--CEEEECCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCC
Confidence            3445666777777654  57766643 346666566555433       23433221110                    


Q ss_pred             --cccc------CHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHH---HH-HHHHhCCcEEEEecccc-CCCC-
Q 007454          222 --RLRI------NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYL---WM-RIAQENDWHILIDACAL-GPKD-  286 (603)
Q Consensus       222 --~g~i------~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~---~i-~~a~e~g~~vlvDAaq~-~~~~-  286 (603)
                        ...+      +.++|++.+.      +++++|.+....|.+| ..+|-+   .+ ++|+++|+++++|-++. .+.. 
T Consensus       159 ~~~~~~~~~~~~d~~~l~~~i~------~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g  232 (396)
T PRK02627        159 PLVEGFIYVPFNDIEALKAAIT------DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTG  232 (396)
T ss_pred             CCCCCceEeCCCCHHHHHHhcC------CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccC
Confidence              0112      6788888874      2578888877788898 455543   33 46899999999999865 2221 


Q ss_pred             -CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          287 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       287 -m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                       +..++.....+|.+++|  |.+| +.--+|+++.++++++.+.
T Consensus       233 ~~~~~~~~~~~pdi~t~s--K~~~-~G~rig~~~~~~~~~~~~~  273 (396)
T PRK02627        233 KLFAYQHYGIEPDIMTLA--KGLG-GGVPIGAVLAKEKVADVFT  273 (396)
T ss_pred             ceeeehhcCCCCCEEEEc--chhh-CCcccEEEEEcHHHHhccC
Confidence             11232334468977665  9888 2223899998887665443

>PLN02955 8-amino-7-oxononanoate synthase

Probab=98.93  E-value=2.7e-07  Score=101.89  Aligned_cols=106  Identities=14%  Similarity=0.126  Sum_probs=74.2

Q ss_pred             CCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC
Q 007454          210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD  288 (603)
Q Consensus       210 Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~  288 (603)
                      |+++...+.+      |.++|+++|...+   .+..+|++-.+-++.|.+.|++++ ++++++|++++||=+...+. +.
T Consensus       225 ~a~~~~f~HN------D~~~Le~~L~~~~---~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv-~G  294 (476)
T PLN02955        225 NVEVFVYRHC------DMYHLNSLLSSCK---MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFV-CG  294 (476)
T ss_pred             CceEEEeCCC------CHHHHHHHHHhCC---CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCce-ec
Confidence            4666665432      6889999986421   245788888899999999999866 58899999999997665432 01


Q ss_pred             --------CCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          289 --------SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       289 --------~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                              .+++. -.+|+++.++=|.||. .  -|++..++++++.|+
T Consensus       295 ~~G~G~~e~~g~~-~di~ii~~TLsKA~G~-~--GGfi~gs~~~~~~l~  339 (476)
T PLN02955        295 ENGGGVAEEFNCE-ADVDLCVGTLSKAAGC-H--GGFIACSKKWKQLIQ  339 (476)
T ss_pred             CCCCcHHHHhCCC-CCCcEEEEeCccchhc-c--CceeecHHHHHHHHH
Confidence                    13333 3689999999999994 2  244555665554443

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=98.93  E-value=1.7e-07  Score=101.78  Aligned_cols=142  Identities=12%  Similarity=0.088  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcC-----CCCCcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCC-ccc
Q 007454          173 SAMKKRIMDFLN-----ISENDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWP-RLR  224 (603)
Q Consensus       173 ~~aR~~Ia~~ln-----a~~~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~g~  224 (603)
                      .+.|+.|+++++     +++++++.+..+. +                     -......++..|++|..++++.. +..
T Consensus        76 ~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~  155 (401)
T TIGR01264        76 LSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWE  155 (401)
T ss_pred             HHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCC
Confidence            367888999887     6777886643221 1                     11223455678999988887522 357


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc--C--CCCCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--G--PKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~--~--~~~m~~ldls~~~  296 (603)
                      ++.++|++.+..      +++++.++.-+|.||..++.+    +++.|+++|++|++|-+-.  .  +..  ...+..+.
T Consensus       156 ~d~~~l~~~~~~------~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~--~~~~~~~~  227 (401)
T TIGR01264       156 IDLKQLESLIDE------KTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGAT--FEPLASLS  227 (401)
T ss_pred             CCHHHHHHHhcc------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcc--cccHHHcC
Confidence            899999888753      578889999999999999864    2346789999999998632  1  211  12222222


Q ss_pred             C---cEEEEcccccCCCCCCceEEEEEeC
Q 007454          297 P---DFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       297 ~---Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      .   =+++.||=|.||.+---+|.+++.+
T Consensus       228 ~~~~vi~~~SfSK~~~~~GlRiG~iv~~~  256 (401)
T TIGR01264       228 STVPILSCGGLAKRWLVPGWRLGWIIIHD  256 (401)
T ss_pred             CCCcEEEEccCcccCCCccceEEEEEecC
Confidence            2   2678999999885312288888753

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=98.93  E-value=8.3e-08  Score=103.37  Aligned_cols=138  Identities=8%  Similarity=0.107  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHHcCCEEEEEeccC-----------Cc------cccCHHHHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEKRGARVMSAEFSW-----------PR------LRINSEKLRKM  233 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~~Ga~V~~~~~~~-----------~~------g~i~~~~L~~~  233 (603)
                      ..+.+++|+++.|..  ..+.... ..++..+.. +-+.|.+|.......           +.      ...+.+++++.
T Consensus        56 ~~~le~~lA~leg~~--~~v~~~sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l~~~  132 (364)
T PRK07269         56 RAKLEETLAAIESAD--YALATSSGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEELIAA  132 (364)
T ss_pred             HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHHHHHh
Confidence            456788899998742  3322222 234443333 335677776542210           00      12356777777


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      |.      ++|++|.+...+|.||...|++.| ++|+++|+.|++|.+...|..-.++   .+++|++++|++|++|+ +
T Consensus       133 i~------~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~pl---~~gaDivv~S~tK~l~g-~  202 (364)
T PRK07269        133 IE------EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQRPI---ELGADIVLHSATKYLSG-H  202 (364)
T ss_pred             cC------cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch---hhCCcEEEecCceeccC-C
Confidence            75      368999999999999999999955 5899999999999996655311233   36899999999999985 4


Q ss_pred             Cc--eEEEEEeC
Q 007454          313 SG--FGCLFVKK  322 (603)
Q Consensus       313 ~G--~G~L~vkk  322 (603)
                      ..  -|+++.++
T Consensus       203 ~d~~gG~v~~~~  214 (364)
T PRK07269        203 NDVLAGVVVTND  214 (364)
T ss_pred             CcccceEEEeCc
Confidence            44  35545443

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=98.92  E-value=2.7e-07  Score=99.41  Aligned_cols=197  Identities=13%  Similarity=0.123  Sum_probs=120.1

Q ss_pred             CCCCchhHHHHHHhhccCcCCCCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccc
Q 007454           86 QYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLH  164 (603)
Q Consensus        86 ~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~  164 (603)
                      .|.....+..+++ .|..   ++.+.|+.+-..+ +|+.+++++.+.+...                   ...|..    
T Consensus        12 ~~~~~~~~~~~~~-~~~~---~~~i~l~~nen~~~~~~~v~~a~~~~~~~~-------------------~~Yp~~----   64 (366)
T PRK01533         12 PYKPGKSPEQMKE-VYGD---HSFVKLASNENPFGCSPRVLDELQKSWLDH-------------------ALYPDG----   64 (366)
T ss_pred             CCCCCCChHHHHH-hcCC---CceEEeCCCCCCCCCCHHHHHHHHHHHHhc-------------------CcCCCC----
Confidence            3433334444554 2432   4578888766553 5677888776432110                   000111    


Q ss_pred             cchHHHHHHHHHHHHHHHcCCCCCcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCCc
Q 007454          165 GGQESGLESAMKKRIMDFLNISENDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       165 g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                       +     ..+.|+.|++++|+++++++++..+. +                     -......++..|+++..++.+  +
T Consensus        65 -g-----~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~--~  136 (366)
T PRK01533         65 -G-----ATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN--N  136 (366)
T ss_pred             -C-----HHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC--C
Confidence             1     24799999999999999998764321 1                     112234456778999988875  4


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-H---HHhCCcEEEEeccc--cCCC-CC-CCCC-CC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-I---AQENDWHILIDACA--LGPK-DM-DSFG-LS  293 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~---a~e~g~~vlvDAaq--~~~~-~m-~~ld-ls  293 (603)
                      +.++.++|++.+..      +++++.++.-+|.||.++|.+.+. +   |+++++ +++|-+-  +... .. ..+. +.
T Consensus       137 ~~~d~~~l~~~~~~------~~~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~~-~iiDe~y~~~~~~~~~~~~~~~~~  209 (366)
T PRK01533        137 GVYDLDEISSVVDN------DTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTL-IVIDEAYYEYVTAKDFPETLPLLE  209 (366)
T ss_pred             CCcCHHHHHHHhCc------CCcEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCCE-EEEEccHHHhhccccCcchhHHhc
Confidence            56899999988753      578889999999999999997553 3   345564 6678652  2111 00 0111 11


Q ss_pred             CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          294 LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      ..+--+++-||=|.||.  .|  +|.++..+++++
T Consensus       210 ~~~~vi~~~SfSK~~~l--~GlRiG~~i~~~~~~~  242 (366)
T PRK01533        210 KHKNILVLRTFSKAYGL--ASFRVGYAVGHEELIE  242 (366)
T ss_pred             cCCCEEEEeCchHHhcC--hHHHHhHHhCCHHHHH
Confidence            12234788899999984  36  677766554443

>PRK06107 aspartate aminotransferase; Provisional

Probab=98.92  E-value=1.8e-07  Score=101.82  Aligned_cols=150  Identities=11%  Similarity=0.109  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHcCC--CCCcEEEeccC-chHHHHHHH---------------------HHHcCCEEEEEeccC-Cccc
Q 007454          170 GLESAMKKRIMDFLNI--SENDYVYDYES-EAVEAMIRT---------------------SEKRGARVMSAEFSW-PRLR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna--~~~e~vf~~es-~sV~~~~~~---------------------a~~~Ga~V~~~~~~~-~~g~  224 (603)
                      ++.+.+.+.+.+.+|.  ++++++++... +++..+...                     ....|.++..++.+. .+..
T Consensus        74 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~  153 (402)
T PRK06107         74 ALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFK  153 (402)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCC
Confidence            3445555566666676  57788776542 233322222                     223345555555432 1245


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhC-CcEEEEecccc----CCC---CCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQEN-DWHILIDACAL----GPK---DMDSFGL  292 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~-g~~vlvDAaq~----~~~---~m~~ldl  292 (603)
                      ++.++|++.+..      +++++.++.-+|.||..+|.+.    ++.|+++ |+++++|-+-.    -+.   .|..++-
T Consensus       154 ~~~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~  227 (402)
T PRK06107        154 LTPEALEAAITP------RTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAP  227 (402)
T ss_pred             CCHHHHHhhcCc------CceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCc
Confidence            788888888752      5788888888999999999853    3457887 99999996421    111   0111111


Q ss_pred             CCCCCcEEEEcccccCCCCCCce--EEEEEeCCCCcC
Q 007454          293 SLVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPI  327 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~--G~L~vkk~~~~~  327 (603)
                      ....--+++.|+.|.||  ..|+  |+++..+++.+.
T Consensus       228 ~~~~~vi~~~S~SK~~~--~pGlRiG~~~~~~~~~~~  262 (402)
T PRK06107        228 ELRDRVLVTNGVSKTYA--MTGWRIGYAAGPADLIAA  262 (402)
T ss_pred             CccCCEEEEeccchhhc--CcccceeeeecCHHHHHH
Confidence            11123477889999998  4474  988876665433

>PRK05967 cystathionine beta-lyase; Provisional

Probab=98.91  E-value=7.6e-08  Score=104.58  Aligned_cols=91  Identities=10%  Similarity=-0.015  Sum_probs=75.1

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      +.+++.|.+|..++.++      .+.|+++|.+      +|+||.+...+|.+|.+.|++.| ++|+++|++|++|.++.
T Consensus       122 ~~l~~~Gi~v~~vd~~~------~e~l~~al~~------~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a  189 (395)
T PRK05967        122 TMLKRLGVEVEYYDPEI------GAGIAKLMRP------NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA  189 (395)
T ss_pred             HHHHhcCeEEEEeCCCC------HHHHHHhcCc------CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence            56778899999986542      4678888863      69999999999999999999965 58999999999999988


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFG  309 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG  309 (603)
                      .|-...|+   ++++|+++.|.-|+++
T Consensus       190 ~p~~~~pl---~~GaDivv~S~tKy~~  213 (395)
T PRK05967        190 TPLYFRPL---DFGVDISIHAATKYPS  213 (395)
T ss_pred             CceecChh---HcCCCEEEEecccccC
Confidence            87422344   4799999999999877

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=98.90  E-value=4.3e-07  Score=98.04  Aligned_cols=282  Identities=16%  Similarity=0.163  Sum_probs=172.5

Q ss_pred             CccccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc---------------------CchHHHHHHHHHHcCCEEEEEe
Q 007454          159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE---------------------SEAVEAMIRTSEKRGARVMSAE  217 (603)
Q Consensus       159 ~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e---------------------s~sV~~~~~~a~~~Ga~V~~~~  217 (603)
                      .|....|..  .+..+.=++||+|+|.+ +-++|...                     --++..|+..++-.+++++...
T Consensus        75 gsR~i~G~~--~~h~~LE~~lA~f~g~e-~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~  151 (388)
T COG0156          75 GSRLISGTS--DLHVELEEELADFLGAE-AALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFK  151 (388)
T ss_pred             CcCcccCCc--HHHHHHHHHHHHHhCCC-cEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEec
Confidence            344334432  44556777899999985 33443210                     0123335666666677776653


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH-HHHHHhCCcEEEEeccccCCCCCC--------
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW-MRIAQENDWHILIDACALGPKDMD--------  288 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~-i~~a~e~g~~vlvDAaq~~~~~m~--------  288 (603)
                      =      .|.++|+++|...+....+.+++++=.+-.+.|.+-|+.. +.+++++|++++||=+..+|. +.        
T Consensus       152 H------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv-~G~~GrG~~e  224 (388)
T COG0156         152 H------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGV-LGPNGRGLAE  224 (388)
T ss_pred             C------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccc-cCCCCccHHH
Confidence            2      4679999999752211115789999999999999999985 568999999999997765553 11        


Q ss_pred             CCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccc
Q 007454          289 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ  367 (603)
Q Consensus       289 ~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  367 (603)
                      .+++....+|+++.++-|-||    +.|+.+.-.. +.+-|...  +         .. +                  . 
T Consensus       225 ~~g~~~~~vdi~~gTlsKAlG----s~Gg~v~g~~~~~d~L~~~--a---------r~-~------------------i-  269 (388)
T COG0156         225 HFGLEPEEVDIIVGTLGKALG----SSGGYIAGSAALIDYLRNR--A---------RP-F------------------I-  269 (388)
T ss_pred             HhCCCCccceEEEEEchhhhc----ccCceeeCcHHHHHHHHHh--C---------Cc-e------------------e-
Confidence            244554567999999999999    4666655433 32322211  0         00 0                  0 


Q ss_pred             ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454          368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW  447 (603)
Q Consensus       368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~  447 (603)
                       |-.+.|+....+.+                                         ++|+++++  -....++++.++.+
T Consensus       270 -fStalpP~~aaa~~-----------------------------------------~al~~l~~--~~~~r~~L~~~~~~  305 (388)
T COG0156         270 -FSTALPPAVAAAAL-----------------------------------------AALRILEE--GPERRERLQELAAF  305 (388)
T ss_pred             -ccCCCCHHHHHHHH-----------------------------------------HHHHHHHh--CHHHHHHHHHHHHH
Confidence             11122222211111                                         57777764  35566778888888


Q ss_pred             HHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          448 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       448 L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      +...++.+.      .+    +++    ...||+.+.+.|..-   ....-..|.++ ||.++....  |-         
T Consensus       306 ~~~~~~~~~------~~----~~~----s~s~I~pv~~gd~~~---a~~~s~~l~~~-Gi~v~~i~~--PT---------  356 (388)
T COG0156         306 FRSLLKALG------LV----LLP----SESPIIPVILGDEER---ALEASRALLEE-GIYVSAIRP--PT---------  356 (388)
T ss_pred             HHHHHHhcC------Cc----cCC----CCCCeeeeEeCCHHH---HHHHHHHHHHC-CeeEeeecC--CC---------
Confidence            886555432      11    122    346889888877431   12334455555 998874311  10         


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                            -..+..-+|+|+....|.+||++|++.+.+.
T Consensus       357 ----------------------Vp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         357 ----------------------VPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             ----------------------CCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence                                  0123357999999999999999999998764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=98.90  E-value=2.6e-07  Score=99.44  Aligned_cols=144  Identities=10%  Similarity=0.149  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .+.|+.|++++++++++++++..+. ++                     ......++..|.++..++++ .+ .++.+++
T Consensus        70 ~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~-~~-~~~~~~l  147 (369)
T PRK08153         70 HDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYR-DD-REDLDAL  147 (369)
T ss_pred             HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCC-CC-CCCHHHH
Confidence            4799999999999999998764322 11                     11222345568888888875 23 4677777


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHH--hCCcEEEEeccc--cCCCCCCCCCCCCCC-CcEEEEcc
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQ--ENDWHILIDACA--LGPKDMDSFGLSLVR-PDFLICSF  304 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~--e~g~~vlvDAaq--~~~~~m~~ldls~~~-~Dflv~S~  304 (603)
                      .+.+..     .+++++.++.-+|.||.++|.+.+ ++++  ++++++++|-+-  +.... ....+.... --+++.||
T Consensus       148 ~~~~~~-----~~~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~-~~~~~~~~~~~~i~~~Sf  221 (369)
T PRK08153        148 LDAARR-----ENAPLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAG-AAPPIDTDDPNVIRMRTF  221 (369)
T ss_pred             HHHhcc-----cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcc-cchhhhhcCCCEEEEecc
Confidence            766542     357888888889999999999844 3443  248899999752  22110 011122122 23778899


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCc
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      =|.||.  .|  +|.++..+++++
T Consensus       222 SK~~g~--~GlRiG~~v~~~~~~~  243 (369)
T PRK08153        222 SKAYGL--AGARVGYAIGAPGTIK  243 (369)
T ss_pred             hHhccC--cchheeeeecCHHHHH
Confidence            999984  37  588887665543

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=98.89  E-value=2.3e-07  Score=99.77  Aligned_cols=139  Identities=19%  Similarity=0.260  Sum_probs=95.4

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCc-h---------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHH
Q 007454          174 AMKKRIMDFLNISENDYVYDYESE-A---------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLR  231 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~-s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~  231 (603)
                      ..|+.|++++|+++++++++..+. +                     -......++..|+++..++.+ ++..++.++|+
T Consensus        75 ~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~l~  153 (371)
T PRK05166         75 ALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT-PDLGFDLDALC  153 (371)
T ss_pred             HHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC-CCCCCCHHHHH
Confidence            689999999999999998764321 1                     112234456779999998886 45688999999


Q ss_pred             HHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHH--hCCcEEEEeccc--cCCC-CCCC-CCC-CCCC-CcEEEE
Q 007454          232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQ--ENDWHILIDACA--LGPK-DMDS-FGL-SLVR-PDFLIC  302 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~--e~g~~vlvDAaq--~~~~-~m~~-ldl-s~~~-~Dflv~  302 (603)
                      +.+..      +++++.++..+|.||.++|.+.+ ++++  +.+.++++|.+-  +... ...+ +.+ .... --+++.
T Consensus       154 ~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~  227 (371)
T PRK05166        154 AAVAR------APRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLR  227 (371)
T ss_pred             Hhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEe
Confidence            88863      57899999999999999999754 3443  247889999862  1210 0001 111 1111 237889


Q ss_pred             cccccCCCCCCc--eEEEEEe
Q 007454          303 SFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vk  321 (603)
                      ||=|.||.  .|  +|.+++.
T Consensus       228 SfSK~~~l--~GlRiG~~i~~  246 (371)
T PRK05166        228 TFSKAYGL--AGLRVGYGLVS  246 (371)
T ss_pred             echHhhhc--chhheeeeecC
Confidence            99999984  36  7887764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=98.89  E-value=2.8e-07  Score=101.40  Aligned_cols=150  Identities=13%  Similarity=0.095  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEe-cc--------------------------CchHHHHHHHHHHcCCEEEEEec--c
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYD-YE--------------------------SEAVEAMIRTSEKRGARVMSAEF--S  219 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~-~e--------------------------s~sV~~~~~~a~~~Ga~V~~~~~--~  219 (603)
                      ..+.++.-+.+++++|++.-++.+. ..                          +.+.......+.-.|++++.++.  +
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d  183 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLD  183 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeec
Confidence            4566777777888888764443221 11                          11122233444556888888884  3


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-cccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC--C--
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL--S--  293 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl--s--  293 (603)
                      ..+..++.++|+++|...   .+++.++++... ...+|..-|++.| ++|+++|+++++|+|...+.. ....+  .  
T Consensus       184 ~~~~~iD~e~Le~aIt~~---~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~-~~~~~~~~g~  259 (444)
T TIGR03531       184 GDELTTDVEDIERAIEEI---GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN-KYMELINKAI  259 (444)
T ss_pred             CcCCCcCHHHHHHHHHhc---cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh-hhhhhhhccc
Confidence            356889999999999742   113444444433 3444578899866 589999999999999776541 11111  1  


Q ss_pred             CC-CCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          294 LV-RPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       294 ~~-~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      .. ++|.+++|+||+|.. |.+-|+++.++.
T Consensus       260 ~~Grad~vv~s~hK~l~~-pg~Gg~I~~~d~  289 (444)
T TIGR03531       260 KVGRVDAVVSSTDKNFMV-PVGGAIIYSFDE  289 (444)
T ss_pred             cccCCCeEEEeCccCCCC-CCCEEEEEECCH
Confidence            12 479999999999886 777777777543

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK09082 methionine aminotransferase; Validated

Probab=98.88  E-value=1.8e-07  Score=101.23  Aligned_cols=113  Identities=13%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecc
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDAC  280 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAa  280 (603)
                      .++..|+++..++.+..+..++.+++++.+..      ++++++++..+|.||..++.+    +++.|+++|+++++|.+
T Consensus       131 ~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~  204 (386)
T PRK09082        131 AIELAGGRAVRVALQPPDFRVDWQRFAAAISP------RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEV  204 (386)
T ss_pred             HHHHcCCEEEEEecCcccccCCHHHHHHhcCc------cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehh
Confidence            34566899999998644678899999998853      578888988899999998764    33578999999999987


Q ss_pred             cc----CCC-CCCCCCCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          281 AL----GPK-DMDSFGLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       281 q~----~~~-~m~~ldls~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      -.    .+. ......+.. .+-.+++.|+-|.||.  .|  +|+++..++++
T Consensus       205 y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~--~G~RiG~iv~~~~l~  255 (386)
T PRK09082        205 YEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHV--TGWKVGYCVAPAALS  255 (386)
T ss_pred             hhhhccCCCCCCChhhCcCccCcEEEEeechhhccc--hhhhhhhhhCCHHHH
Confidence            31    111 000111211 2356888999999984  37  68888765544

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=98.88  E-value=2.2e-07  Score=99.39  Aligned_cols=152  Identities=17%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC-chHHHHHHHHHHcCCEEEEEec---cCCc---------ccc-CHHHHHHHHh
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES-EAVEAMIRTSEKRGARVMSAEF---SWPR---------LRI-NSEKLRKMVV  235 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~~~~a~~~Ga~V~~~~~---~~~~---------g~i-~~~~L~~~l~  235 (603)
                      +..++.++.+|+++|+++++++....+ +++..++......|.+|.....   .++.         .++ ...+++. +.
T Consensus        54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~~~~~~l~~-l~  132 (346)
T TIGR03576        54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPPGRKVVHYLPEKPAHPSIPRSCKLAGAEYFESDELSE-LK  132 (346)
T ss_pred             HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCCCCEEEECCCCCCCchhHHHHHHHcCCEEeccCCHHH-Hh
Confidence            677899999999999988887655432 3445555555566777654211   1110         011 1112222 21


Q ss_pred             hcCCCCCCeeEEEEeCccccccccc---cHHHH-HHHHhCCcEEEEeccccCCCCC--CCCCCCCCCCcEEEEcccccCC
Q 007454          236 SKGKKKKQRGLFVFPLHSRMTGARY---PYLWM-RIAQENDWHILIDACALGPKDM--DSFGLSLVRPDFLICSFYQIFG  309 (603)
Q Consensus       236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~---pl~~i-~~a~e~g~~vlvDAaq~~~~~m--~~ldls~~~~Dflv~S~hK~fG  309 (603)
                      .    .++++++.++. ++++|.++   |++.+ ++|+++|++|++|-+...+...  ..-.+..+++|+++.|++|.++
T Consensus       133 ~----~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKala  207 (346)
T TIGR03576       133 K----IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMD  207 (346)
T ss_pred             h----CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhcc
Confidence            1    12477888876 57899985   66644 5789999999999986654200  0111223468999999999873


Q ss_pred             CCCCceEEEEEeCCCCcCcC
Q 007454          310 ENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       310 ~~P~G~G~L~vkk~~~~~L~  329 (603)
                      + +. .|+++.++++++.|.
T Consensus       208 G-~r-~G~v~~~~~li~~l~  225 (346)
T TIGR03576       208 G-PR-GGLLAGRKELVDKIK  225 (346)
T ss_pred             c-cc-eEEEEeCHHHHHHHH
Confidence            2 65 588888877655444

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=98.88  E-value=1.9e-07  Score=100.51  Aligned_cols=132  Identities=11%  Similarity=0.143  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCchHHHH------------------------HHHHHHcCCEEEEEeccCCccccCH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESEAVEAM------------------------IRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~------------------------~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      .++.+++|+++.|++.. +++..-..++..+                        ...+++.|+++..++.      .+.
T Consensus        54 ~~~le~~la~l~g~~~~-~~~~sG~~ai~~~~~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~------~d~  126 (366)
T PRK08247         54 RGVLEQAIADLEGGDQG-FACSSGMAAIQLVMSLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT------ASL  126 (366)
T ss_pred             HHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC------CCH
Confidence            45677888888888543 5443322222222                        2233345555555543      267


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQ  306 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK  306 (603)
                      ++|+++|.+      +|+++.+..-+|.+|.+.+++.| ++|+++|+++++|.+...+....++   ..++|+++.|+.|
T Consensus       127 ~~l~~~i~~------~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~---~~g~di~i~S~sK  197 (366)
T PRK08247        127 KAIEQAITP------NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL---EEGADIVIHSATK  197 (366)
T ss_pred             HHHHHhccc------CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch---hcCCcEEEeecce
Confidence            788888753      68999998888999999999855 5899999999999987555311222   3579999999999


Q ss_pred             cCCCCCCc-eEEEEE
Q 007454          307 IFGENPSG-FGCLFV  320 (603)
Q Consensus       307 ~fG~~P~G-~G~L~v  320 (603)
                      ++|+ +.+ +|.+++
T Consensus       198 ~~~g-~~d~~~G~iv  211 (366)
T PRK08247        198 YLGG-HNDVLAGLVV  211 (366)
T ss_pred             eccC-CCceeeeEEe
Confidence            9985 444 344444

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=98.88  E-value=5e-07  Score=95.80  Aligned_cols=143  Identities=13%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-h-------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-A-------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRK  232 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-s-------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~  232 (603)
                      .+.|++|++++|+++++++.+..+. +                   -......++..|+++..+|++.  ..++.+.++ 
T Consensus        43 ~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~~~~~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~--~~~~~~~l~-  119 (332)
T PRK06425         43 TDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYINVGNIIIVEPNFNEYKGYAFTHGIRISALPFNL--INNNPEILN-  119 (332)
T ss_pred             HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhCCCcEEEeCCChHHHHHHHHHcCCeEEEEeCCc--ccCcHHHHh-
Confidence            4789999999999998887654332 1                   1222344566788888888752  223333332 


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--cCCCCCCC-CCC-CCCCCcEEEEcc
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--LGPKDMDS-FGL-SLVRPDFLICSF  304 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~~~~~m~~-ldl-s~~~~Dflv~S~  304 (603)
                         .     .+++++.++.-+|.||..+|.+.+    +.|+++|.++++|-+=  +......+ ..+ ...+-=.++-||
T Consensus       120 ---~-----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~Sf  191 (332)
T PRK06425        120 ---N-----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSL  191 (332)
T ss_pred             ---h-----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeec
Confidence               1     257888888899999999997633    3578899999999751  22110001 111 111223566799


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      =|.||-  .|  +|.++..+++++.+
T Consensus       192 SK~~~l--~GlRiGy~v~~~~li~~l  215 (332)
T PRK06425        192 TKILGI--PSLRIGYIATDDYNMKIS  215 (332)
T ss_pred             HHhcCC--chhhheeeecCHHHHHHH
Confidence            999994  37  68888776655433

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=98.87  E-value=8.8e-07  Score=95.21  Aligned_cols=149  Identities=9%  Similarity=0.129  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-h----------------------HHHHHHHHHHcCCEEEEEeccCC--ccccCH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-A----------------------VEAMIRTSEKRGARVMSAEFSWP--RLRINS  227 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-s----------------------V~~~~~~a~~~Ga~V~~~~~~~~--~g~i~~  227 (603)
                      .+.|+.|++++|+++++++++..+. +                      -......++..|+++..++.+-+  ...++.
T Consensus        62 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~  141 (364)
T PRK04781         62 PGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADV  141 (364)
T ss_pred             HHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCH
Confidence            5899999999999999997754221 1                      11222334567888888887311  234677


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEeccc--cCCCCCCCCCC-CCCCCcEEE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACA--LGPKDMDSFGL-SLVRPDFLI  301 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq--~~~~~m~~ldl-s~~~~Dflv  301 (603)
                      +++.+.+..     ++++++.++..+|.||.++|.+.+ ++++.  .+++|++|.+=  +.... ..+.+ ....-=+++
T Consensus       142 ~~l~~~~~~-----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~-~~~~~~~~~~~vi~~  215 (364)
T PRK04781        142 PAIVAAALA-----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP-SAVGLLARYDNLAVL  215 (364)
T ss_pred             HHHHHHHhc-----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc-chHHHHhhCCCEEEE
Confidence            777655432     368999999999999999999844 34432  47889999862  22210 01111 122223778


Q ss_pred             EcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          302 CSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       302 ~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      -||=|.||.  .|  +|.++..+++++.+.
T Consensus       216 ~SfSK~~gl--~GlRvGy~v~~~~l~~~l~  243 (364)
T PRK04781        216 RTLSKAHAL--AAARIGSLIANAELIAVLR  243 (364)
T ss_pred             ecChhhccc--ccceeeeeeCCHHHHHHHH
Confidence            899999994  26  788887766654443

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=98.86  E-value=1.7e-07  Score=98.12  Aligned_cols=101  Identities=14%  Similarity=0.200  Sum_probs=70.8

Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH----HHHhCCcEEEEeccccCCCCC--CCCCCCC
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR----IAQENDWHILIDACALGPKDM--DSFGLSL  294 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq~~~~~m--~~ldls~  294 (603)
                      ++|++++++++..|.........+.++++--+.++-|++||++.++    .||++|..+|+|++-++-- +  ..+++..
T Consensus       108 ~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA-~valg~~~~~  186 (342)
T COG2008         108 ADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANA-LVALGVALKT  186 (342)
T ss_pred             CCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHH-HHHcCCCHHH
Confidence            6899999999998875221233577777777777999999998653    5799999999998533210 0  1122332


Q ss_pred             --CCCcEEEEcccccCCCCCCceEEEEE-eCCCC
Q 007454          295 --VRPDFLICSFYQIFGENPSGFGCLFV-KKSTV  325 (603)
Q Consensus       295 --~~~Dflv~S~hK~fG~~P~G~G~L~v-kk~~~  325 (603)
                        -++|.+.+.+.|-.|. |  .|++++ +++..
T Consensus       187 ~~~~~D~v~~~~tK~g~~-~--~gAiv~gn~~~~  217 (342)
T COG2008         187 IKSYVDSVSFCLTKGGGA-P--VGAIVFGNRDFA  217 (342)
T ss_pred             HHhhCCEEEEecccCCcc-e--eeeEEEcCHHHH
Confidence              3799999999999886 3  565554 44443

>PRK08175 aminotransferase; Validated

Probab=98.85  E-value=4.9e-07  Score=98.13  Aligned_cols=114  Identities=12%  Similarity=0.058  Sum_probs=73.7

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccc
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACA  281 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq  281 (603)
                      ++..|+++..++.+. . ....++|++++...   .++++++.+...+|.||.++|.+    ++++|+++|+++++|-+-
T Consensus       132 ~~~~g~~~~~v~~~~-~-~~~~~~l~~~l~~~---~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y  206 (395)
T PRK08175        132 AVIAGAQVRSVPLVE-G-VDFFNELERAIRES---YPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAY  206 (395)
T ss_pred             HHHcCCeEEEEeccc-C-CCcHHHHHHHHhhc---cCCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence            345688888887763 2 22467888877631   23578888887899999999995    335789999999999753


Q ss_pred             c--C--CCCCCCC-CCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          282 L--G--PKDMDSF-GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       282 ~--~--~~~m~~l-dls~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      .  .  ++.+.++ .+.. .+..+++.|+=|.||. | |  +|+++..+++++
T Consensus       207 ~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-p-GlRiG~~~~~~~l~~  257 (395)
T PRK08175        207 ADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNM-A-GWRIGFMVGNPELVS  257 (395)
T ss_pred             HhhccCCCCCcchhcCCCcccCEEEEeeccccccC-c-chhheeeeCCHHHHH
Confidence            1  1  2110111 1111 1233567999999985 3 6  688876555443

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=98.85  E-value=1.2e-06  Score=96.62  Aligned_cols=107  Identities=16%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      ....|++++.++++..++.++.++|++.|..      +|+++++.+   .+|...+++.| ++|+++|+.|++|++|..|
T Consensus       128 v~~~G~~pv~vdvd~~~~~id~~~le~~i~~------~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G  198 (438)
T PRK15407        128 IIQNGLVPVFVDVELPTYNIDASLLEAAVSP------KTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALG  198 (438)
T ss_pred             HHHcCCEEEEEecCCCcCCcCHHHHHHHcCc------CCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchh
Confidence            3456899998888644678899999998863      688888876   47888899854 6899999999999999888


Q ss_pred             CCCCCCCCCCCCCcEEEEcccc---cCCCCCCceEEEEEeCCCC
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQ---IFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK---~fG~~P~G~G~L~vkk~~~  325 (603)
                      ......-+-.++ |+.+||||.   |-.+ + | |+|+.+++.+
T Consensus       199 ~~~~g~~~G~~g-d~~~fSf~~~k~~~~g-e-G-G~l~t~d~~l  238 (438)
T PRK15407        199 STYDGRMTGTFG-DIATLSFYPAHHITMG-E-G-GAVFTNDPLL  238 (438)
T ss_pred             hhcCCeeeeccC-ceEEEeCCCCCCcccc-C-c-eEEEECCHHH
Confidence            621111133455 999999985   3322 2 5 8888887654

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=98.85  E-value=4.6e-07  Score=99.00  Aligned_cols=142  Identities=11%  Similarity=0.135  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHcC------------CCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEec
Q 007454          173 SAMKKRIMDFLN------------ISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEF  218 (603)
Q Consensus       173 ~~aR~~Ia~~ln------------a~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~  218 (603)
                      .+.|+.|+++++            +++++++++..+. ++.                     .....++..|+++..++.
T Consensus        78 ~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~  157 (412)
T PTZ00433         78 PEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNC  157 (412)
T ss_pred             HHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence            368888888876            6678887654321 111                     123445677899988887


Q ss_pred             cC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc--C--CCCCCC
Q 007454          219 SW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL--G--PKDMDS  289 (603)
Q Consensus       219 ~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~--~--~~~m~~  289 (603)
                      +. .+..++.++|++.+..      +++++.++.-+|.||..++.+.    ++.|+++|++|++|-+-.  .  +....+
T Consensus       158 ~~~~~~~~d~~~l~~~~~~------~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~  231 (412)
T PTZ00433        158 RPEKDWEADLDEIRRLVDD------RTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTS  231 (412)
T ss_pred             CccccCcCCHHHHHHHhcc------CceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccc
Confidence            52 1347889999888753      5788899999999999999753    346789999999998632  1  110001


Q ss_pred             -CCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          290 -FGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       290 -ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                       ..+.....=+++.||=|.||.+-.-+|.+++
T Consensus       232 ~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i~  263 (412)
T PTZ00433        232 VADFDTTVPRVILGGTAKNLVVPGWRLGWLLL  263 (412)
T ss_pred             hhhccCCCceEEEccchhhcCCCCeeEEEEEE
Confidence             1111111226778999999853234788886

>PRK06348 aspartate aminotransferase; Provisional

Probab=98.82  E-value=6.9e-07  Score=96.60  Aligned_cols=146  Identities=17%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEecc-CCccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFS-WPRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~-~~~g~  224 (603)
                      ..|+.|++++      ++++++++.+..+. ++..                     ....++..|+++..++.. ..+..
T Consensus        70 ~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~  149 (384)
T PRK06348         70 ELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQ  149 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCc
Confidence            5777777777      46788887764432 2111                     233445567787777653 12345


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc--C-CCCCCC-CCCCC-C
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL--G-PKDMDS-FGLSL-V  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~--~-~~~m~~-ldls~-~  295 (603)
                      ++.++|++.+..      +++++.++.-+|.||..++.+.    +..|+++|+++++|-+-.  . .....+ ..+.. .
T Consensus       150 ~d~~~l~~~~~~------~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  223 (384)
T PRK06348        150 INVKKLEALITS------KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMP  223 (384)
T ss_pred             CCHHHHHHhhCc------CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCc
Confidence            889999988853      4677878888999999999753    346789999999998622  1 110011 11111 1


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      .-.+++-|+=|.||.+---+|+++..+.+.
T Consensus       224 ~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~  253 (384)
T PRK06348        224 ERTITFGSFSKDFAMTGWRIGYVIAPDYII  253 (384)
T ss_pred             CcEEEEecchhccCCccccceeeecCHHHH
Confidence            234777899999985312278888765543

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=98.81  E-value=6.1e-07  Score=100.55  Aligned_cols=150  Identities=15%  Similarity=0.191  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHcC--------CCCCcEEEeccCc-hHHH---------------------HHHHHH-HcCCEEEEEeccC-
Q 007454          173 SAMKKRIMDFLN--------ISENDYVYDYESE-AVEA---------------------MIRTSE-KRGARVMSAEFSW-  220 (603)
Q Consensus       173 ~~aR~~Ia~~ln--------a~~~e~vf~~es~-sV~~---------------------~~~~a~-~~Ga~V~~~~~~~-  220 (603)
                      .+.|+.||++++        ++|++++.+..+. ++..                     ....++ +.|+++..++++. 
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~  176 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSS  176 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCC
Confidence            368888888876        7889997764332 1111                     112233 5799999999853 


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCC---
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDS---  289 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~---  289 (603)
                      .+..++.+.|++.+....+...+++++.++.-+|.||.++|.+.+    ..|+++++++++|-+-..    +....+   
T Consensus       177 ~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~  256 (496)
T PLN02376        177 DNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAE  256 (496)
T ss_pred             ccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHH
Confidence            235788898887654211112367888888999999999998643    457899999999975321    211111   


Q ss_pred             C----CCCCCCCcE--EEEcccccCCCCCCceEEEEEeC
Q 007454          290 F----GLSLVRPDF--LICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       290 l----dls~~~~Df--lv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +    |.....+|.  ++.|+-|.||.|---+|+++..+
T Consensus       257 l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~  295 (496)
T PLN02376        257 VVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFN  295 (496)
T ss_pred             hhccccccccCCCeEEEEEeccccCCCCcceEEEEEECC
Confidence            1    111112343  46799999985323389998753

>PRK09148 aminotransferase; Validated

Probab=98.79  E-value=6.6e-07  Score=97.57  Aligned_cols=148  Identities=14%  Similarity=0.058  Sum_probs=90.2

Q ss_pred             HHHHHHHHHc----C--CCCC-cEEEeccCc-hHHHH---------------------HHHHHHcCCEEEEEeccCCccc
Q 007454          174 AMKKRIMDFL----N--ISEN-DYVYDYESE-AVEAM---------------------IRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~-e~vf~~es~-sV~~~---------------------~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      +.|+.|++++    |  ++++ +++.+..++ ++..+                     ...++..|+++..++.+. ++.
T Consensus        72 ~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~-~~~  150 (405)
T PRK09148         72 GLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEP-DEE  150 (405)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCC-CCC
Confidence            6777888776    4  5676 787654332 21111                     223455688888887752 221


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccC----CCCCCCC-CCCC-
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDSF-GLSL-  294 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~----~~~m~~l-dls~-  294 (603)
                       ..+++++.+...   .++++++.+..-+|.||..+|.+    ++.+|+++|++|++|-+-..    +....++ .+.. 
T Consensus       151 -~~~~l~~~~~~~---~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~  226 (405)
T PRK09148        151 -FFPALERAVRHS---IPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGA  226 (405)
T ss_pred             -CccCHHHHHhhc---cccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCc
Confidence             234555555421   13678888888899999999985    33468999999999986321    1100011 1111 


Q ss_pred             CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          295 VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      .+..+++-||-|.||.  .|  +|+++..+++++.+
T Consensus       227 ~~~~i~~~SfSK~~~~--pGlR~G~~v~~~~~i~~l  260 (405)
T PRK09148        227 KDVTVEFTSMSKTFSM--AGWRMGFAVGNERLIAAL  260 (405)
T ss_pred             cCcEEEEeccccccCC--cchheeeeeCCHHHHHHH
Confidence            1234568999999994  37  89998766554433

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=98.79  E-value=1.4e-06  Score=93.79  Aligned_cols=300  Identities=14%  Similarity=0.049  Sum_probs=156.0

Q ss_pred             HHHHcCCCC-CcEEEeccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc
Q 007454          179 IMDFLNISE-NDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG  257 (603)
Q Consensus       179 Ia~~lna~~-~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG  257 (603)
                      .+..+|+.+ ++++...-+  -.+........|+++++++++..++.+|.++|+++|..      +|+.+.+.|.   -|
T Consensus        56 al~~l~~~~gdeVi~p~~t--~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~------~t~ai~~~h~---~G  124 (363)
T PF01041_consen   56 ALRALGLGPGDEVIVPAYT--FPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITP------KTKAILVVHL---FG  124 (363)
T ss_dssp             HHHHTTGGTTSEEEEESSS---THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHT------TEEEEEEE-G---GG
T ss_pred             HHHhcCCCcCceEecCCCc--chHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhcc------CccEEEEecC---CC
Confidence            344577765 344433211  11223445567999999999977899999999999985      6888888775   79


Q ss_pred             ccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc--ccCCCCCCceEEEEEeCCCC-cCcCCCCC
Q 007454          258 ARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY--QIFGENPSGFGCLFVKKSTV-PILVDNTS  333 (603)
Q Consensus       258 ~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h--K~fG~~P~G~G~L~vkk~~~-~~L~p~~~  333 (603)
                      ...+++.+ ++|+++|+.|+-||||..|.....--+-.+ -|+.+||||  |++.. . .-|+++.+++.+ +.++ .+.
T Consensus       125 ~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~-gd~~~fSf~~~K~i~~-g-eGG~v~~~~~~~~~~~~-~~~  200 (363)
T PF01041_consen  125 NPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSF-GDIAIFSFHPTKIITT-G-EGGAVVTNDPELAERAR-ALR  200 (363)
T ss_dssp             B---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSS-SSEEEEESSTTSSS-S-S-S-EEEEESTHHHHHHHH-HHT
T ss_pred             CcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCC-CCceEecCCCCCCCcC-C-CCeeEEecHHHHHHHhh-hhh
Confidence            99999966 589999999999999998752001111223 399999998  77642 1 247777766432 2222 111


Q ss_pred             C-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccC
Q 007454          334 S-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNAN  412 (603)
Q Consensus       334 g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  412 (603)
                      . |...  .....+                       .....     +|+.      -.-.++++.              
T Consensus       201 ~~g~~~--~~~~~~-----------------------~~~~~-----~g~n------~rm~~~~AA--------------  230 (363)
T PF01041_consen  201 NHGRSR--DAFRRY-----------------------RHELP-----PGYN------FRMSELQAA--------------  230 (363)
T ss_dssp             BTTEET--SECSTT-----------------------EESSS-----S--B-------B-BHHHHH--------------
T ss_pred             ccCcCc--cccccc-----------------------ccccc-----CCcc------cccHHHHHH--------------
Confidence            1 2210  000000                       00000     1110      001111111              


Q ss_pred             CCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC--CCCEEEEEEccCCC
Q 007454          413 TNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD--RGPALAFNVFDWKR  490 (603)
Q Consensus       413 ~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~--rg~ivsFnv~~~~g  490 (603)
                                 .++..+++  ++.+.++-+.+.+++.+.|..++.        +..........  ....+.+.+++...
T Consensus       231 -----------igl~QL~~--L~~~~~~R~~~a~~y~~~L~~~~~--------~~~~~~~~~~~~~~~~~f~i~~~~~~~  289 (363)
T PF01041_consen  231 -----------IGLAQLKR--LDEIIARRRENAQRYREALAGIPG--------IKPPPIPDGAERSSYYRFPIRLPDEAL  289 (363)
T ss_dssp             -----------HHHHHHHT--HHHHHHHHHHHHHHHHHHHTTGTT--------EEEEGCGTTTEEBCESSEEEEETCCGC
T ss_pred             -----------HHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCCC--------ccccccccccccccccccccccccccc
Confidence                       23434443  566667778889999999987642        43333221111  23345555655332


Q ss_pred             CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHH
Q 007454          491 EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDV  570 (603)
Q Consensus       491 ~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDV  570 (603)
                        ...+.+.+.+.++||.++... +.+....+.       +............+.    .......+.+-++..-|.+||
T Consensus       290 --~~rd~l~~~L~~~GI~~~~~~-~~pl~~~~~-------~~~~~~~~~~~~P~a----e~l~~r~l~LP~~~~lt~edv  355 (363)
T PF01041_consen  290 --ADRDELVEALRARGIETRPHY-PKPLHRQPV-------YRSYPYYAPGDLPNA----ERLSQRLLSLPIHPRLTEEDV  355 (363)
T ss_dssp             --STHHHHHHHHHHTTBEEBCST-SSCGGGSGG-------GTTGEEEETSSSHHH----HHHHHHEEEEEHSTTSCHHHH
T ss_pred             --chHHHHHHHHHHCCCcccccc-cCchhhhHH-------HHhcCccccCCCHHH----HHHHhCeEECcCCCCCCHHHH
Confidence              345556666677899998765 111100000       000000000000000    011124899999999999999


Q ss_pred             HHHHHHHH
Q 007454          571 YRLWAFVA  578 (603)
Q Consensus       571 d~l~~~l~  578 (603)
                      +++++.|+
T Consensus       356 ~~I~~~ir  363 (363)
T PF01041_consen  356 DYIAEAIR  363 (363)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhccC
Confidence            99999875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.78  E-value=2.2e-06  Score=97.59  Aligned_cols=124  Identities=13%  Similarity=0.105  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHcCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HH---HhC
Q 007454          199 VEAMIRTSEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IA---QEN  271 (603)
Q Consensus       199 V~~~~~~a~~~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a---~e~  271 (603)
                      +-.+.+++.--|.   .|+.+|++ .+++++.++|++.|......+..+-.|+-++-+-.+|.+=|++.|. ++   +++
T Consensus       232 HyS~~KAa~ilGlG~~~vv~VpvD-~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~  310 (608)
T TIGR03811       232 HYSWLKAADIIGIGLDQVIPVPVD-SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKE  310 (608)
T ss_pred             cHHHHHHHHHcCCCcccEEEeecC-CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHc
Confidence            4445566665676   58899998 5899999999999975322233456677788889999999999764 55   567


Q ss_pred             Cc--EEEEeccccCCC-CC--------CCCC------------------CC---------CCCCcEEEEcccccCCCCCC
Q 007454          272 DW--HILIDACALGPK-DM--------DSFG------------------LS---------LVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       272 g~--~vlvDAaq~~~~-~m--------~~ld------------------ls---------~~~~Dflv~S~hK~fG~~P~  313 (603)
                      |.  ++|||||-.+.- .|        .|.+                  ++         .-++|-|++.+|||+.- |.
T Consensus       311 gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~-Py  389 (608)
T TIGR03811       311 GIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYI-PY  389 (608)
T ss_pred             CCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCccccccc-CC
Confidence            85  799999744411 00        0110                  11         13799999999999876 99


Q ss_pred             ceEEEEEeCCC
Q 007454          314 GFGCLFVKKST  324 (603)
Q Consensus       314 G~G~L~vkk~~  324 (603)
                      +.|+|++|+..
T Consensus       390 ~~G~ll~Rd~~  400 (608)
T TIGR03811       390 SAGGIVIQDIR  400 (608)
T ss_pred             CeEEEEEeCHH
Confidence            99999999864

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK06290 aspartate aminotransferase; Provisional

Probab=98.78  E-value=1.1e-06  Score=96.22  Aligned_cols=145  Identities=15%  Similarity=0.144  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHc----C---CCCC-cEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCC-
Q 007454          173 SAMKKRIMDFL----N---ISEN-DYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWP-  221 (603)
Q Consensus       173 ~~aR~~Ia~~l----n---a~~~-e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-  221 (603)
                      ...|+.|++++    |   ++++ +++.+..++ ++.                     .....++..|+++..++.+.. 
T Consensus        84 ~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~  163 (410)
T PRK06290         84 QEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEEN  163 (410)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCc
Confidence            36777777775    4   5665 686654322 111                     123446677999999988632 


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccC----CCCCCC-CCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALG----PKDMDS-FGL  292 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~----~~~m~~-ldl  292 (603)
                      ...++.++|++.+..      +++++.+..-+|.||.++|.+    ++.+|+++|.+|++|-+-.-    +.. .+ +.+
T Consensus       164 ~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~-~s~~~~  236 (410)
T PRK06290        164 NFLPDLDSIPKDIKE------KAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKP-LSFLSV  236 (410)
T ss_pred             CCcCCHHHHHHhhcc------cceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCC-cChhcC
Confidence            345688888888753      577888777799999999975    33568999999999986321    110 01 112


Q ss_pred             CC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc
Q 007454          293 SL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       293 s~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~  326 (603)
                      .. .+.++++-|+=|.||.  .|  +|.++..+++++
T Consensus       237 ~~~~~~~I~i~SfSK~~g~--~GlRiG~ii~~~~l~~  271 (410)
T PRK06290        237 PGAKEVGVEIHSLSKAYNM--TGWRLAFVVGNELIVK  271 (410)
T ss_pred             CCccccEEEEeechhhcCC--chhheEeEEeCHHHHH
Confidence            11 2457999999999984  37  798887665543

>PRK06434 cystathionine gamma-lyase; Validated

Probab=98.77  E-value=9.6e-07  Score=95.80  Aligned_cols=100  Identities=15%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq  281 (603)
                      ...+.+.|+++.+++++.. ..+     .  +..     .+++||.+-+.+|.|+...|++.| ++||++|  ++||+++
T Consensus       121 ~~~~~~~Gi~v~fvd~~~~-~~~-----~--l~~-----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~  185 (384)
T PRK06434        121 NKVLKTLGIHVDYIDTDRL-NSL-----D--FDP-----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATF  185 (384)
T ss_pred             HHHHHhcCcEEEEECCCCh-hhe-----e--ecC-----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCC
Confidence            3455567777777776521 111     1  221     268999999999999999999955 5899988  5679998


Q ss_pred             cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe
Q 007454          282 LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       282 ~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      ..|....|++   +++|++++|.||++++ +.+  -|++..+
T Consensus       186 ~s~~~~~pl~---~gaDivv~S~tK~i~G-~~d~~gG~vv~~  223 (384)
T PRK06434        186 ASPYNQNPLD---LGADVVIHSATKYISG-HSDVVMGVAGTN  223 (384)
T ss_pred             CCcccCCchh---cCCCEEEeecccccCC-CCCceEEEEecC
Confidence            7665223554   6899999999999986 554  3444443

>PLN02656 tyrosine transaminase

Probab=98.74  E-value=9.7e-07  Score=96.40  Aligned_cols=143  Identities=12%  Similarity=0.133  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccCc-hHHHH---------------------HHHHHHcCCEEEEEeccCC-cc
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYESE-AVEAM---------------------IRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es~-sV~~~---------------------~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      .+.|+.|+++++      +++++++++..+. ++..+                     ...++..|+++..++++.. +.
T Consensus        76 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~  155 (409)
T PLN02656         76 PQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGW  155 (409)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCC
Confidence            367888888874      5678887654321 22111                     1223446888888887422 34


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc----CCCCCCCC-CCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL----GPKDMDSF-GLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~----~~~~m~~l-dls~  294 (603)
                      .++.++|++++..      +++++++..-+|.||.++|.+    +++.|+++|+++++|.+-.    -+....++ .+..
T Consensus       156 ~~d~~~l~~~~~~------~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~  229 (409)
T PLN02656        156 EVDLDAVEALADQ------NTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS  229 (409)
T ss_pred             CCCHHHHHHHhcc------CceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcc
Confidence            6899999888753      578888888999999999764    3356899999999999732    12110111 1111


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ...=+++.||=|.|+.+---+|+++..
T Consensus       230 ~~~vi~~~SfSK~f~~pGlRiG~~i~~  256 (409)
T PLN02656        230 IVPVLTLGSLSKRWIVPGWRLGWFVTT  256 (409)
T ss_pred             cCcEEEEcccchhccCcceeEEEEEEe
Confidence            122367889999988532238888874

>PLN02187 rooty/superroot1

Probab=98.74  E-value=2e-06  Score=95.64  Aligned_cols=141  Identities=11%  Similarity=0.134  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccC-Ccc
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSW-PRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~-~~g  223 (603)
                      ...|+.||++++      +++++++++..+. ++..                     ....++..|++++.+++.. .+.
T Consensus       111 ~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~  190 (462)
T PLN02187        111 LPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEW  190 (462)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCC
Confidence            468899999884      6888987764332 2211                     1234566788888887631 245


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccc----cCCCCCCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACA----LGPKDMDSFGLSLV  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq----~~~~~m~~ldls~~  295 (603)
                      .++.++|++++..      +++++.+..-+|.||.+++.+.    +..|+++|++|++|-+-    +.+..  ...+..+
T Consensus       191 ~~d~~~l~~~~~~------~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~--~~s~~~~  262 (462)
T PLN02187        191 EIDLEGIEAIADE------NTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNP--FVSMGKF  262 (462)
T ss_pred             ccCHHHHHHhcCC------CcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCC--ceeHHHh
Confidence            7889999887753      5788888888999999999653    34678999999999862    11210  1122222


Q ss_pred             C---CcEEEEcccccCCCCCCceEEEEEe
Q 007454          296 R---PDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       296 ~---~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      .   .=+++.|+=|.||.+---+|.+++.
T Consensus       263 ~~~~~vi~l~SfSK~f~~pGlRiG~~v~~  291 (462)
T PLN02187        263 ASIVPVLTLAGISKGWVVPGWKIGWIALN  291 (462)
T ss_pred             ccCCcEEEEecchhhcCCccceeEEEEec
Confidence            1   2366779999998531227888873

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=98.73  E-value=3e-06  Score=91.41  Aligned_cols=153  Identities=12%  Similarity=0.136  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHcC--------CCCCcEEEeccCc-hH----------------------HHHHHHHHHcCCEEEEEeccCC
Q 007454          173 SAMKKRIMDFLN--------ISENDYVYDYESE-AV----------------------EAMIRTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       173 ~~aR~~Ia~~ln--------a~~~e~vf~~es~-sV----------------------~~~~~~a~~~Ga~V~~~~~~~~  221 (603)
                      .+.|+.|+++++        +++++++.+..+. ++                      ......++..|+++..++.+..
T Consensus        69 ~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~  148 (374)
T PRK02610         69 EALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDPE  148 (374)
T ss_pred             HHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCcc
Confidence            478899999988        7888887665432 11                      1122345667888888887532


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHH--hCCcEEEEeccc--cCCCCCCCCCCCCCCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQ--ENDWHILIDACA--LGPKDMDSFGLSLVRP  297 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~--e~g~~vlvDAaq--~~~~~m~~ldls~~~~  297 (603)
                      +..++.++|++.+...  ...+++++.+..-+|.||..++.+.+..+.  .+++++++|-+-  +....+ .-.+....-
T Consensus       149 ~~~~d~~~l~~~~~~~--~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~-~~~~~~~~~  225 (374)
T PRK02610        149 TFEIDLAAAQSAIEQT--QNPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTL-VGELAQHPN  225 (374)
T ss_pred             cCCCCHHHHHHHHHhh--cCCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccch-HHHHhcCCC
Confidence            3578999999988630  012578888777899999999998664322  248999999763  222210 011222111


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      =+++-||=|.||.+---+|.++..+++++.+
T Consensus       226 ~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l  256 (374)
T PRK02610        226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVL  256 (374)
T ss_pred             EEEEEecchhccCcccceeeeecCHHHHHHH
Confidence            2677899999985322278887665554433

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=98.72  E-value=2e-06  Score=91.90  Aligned_cols=146  Identities=11%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHHHHHH---------------------HHHHcCCEEEEEeccCC-ccccCHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVEAMIR---------------------TSEKRGARVMSAEFSWP-RLRINSEK  229 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~~~~~---------------------~a~~~Ga~V~~~~~~~~-~g~i~~~~  229 (603)
                      ...|+.|++++++++++++.+..+. ++..+..                     .++..|+++..++++.. +..++.++
T Consensus        68 ~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~  147 (357)
T PRK14809         68 ADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADT  147 (357)
T ss_pred             HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHH
Confidence            4799999999999999997765332 2222211                     23446777877776421 23456666


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEecccc--CCCCCCCCC-CCCCCCcEEEEc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACAL--GPKDMDSFG-LSLVRPDFLICS  303 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~--~~~~m~~ld-ls~~~~Dflv~S  303 (603)
                      +.+.+.       +++++.++.-+|.||..+|.+.+ ++++.  .+.++++|-+-.  .... ..+. +....-=+++.|
T Consensus       148 ~~~~~~-------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~-~~~~~~~~~~~vi~~~S  219 (357)
T PRK14809        148 VLDAYD-------GERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERP-SAVALVEERDDVAVLRT  219 (357)
T ss_pred             HHHhhc-------CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCc-hhHHHHhhCCCEEEEec
Confidence            655442       46788888999999999999744 45443  377899997632  2110 0111 111111266789


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      |=|.||  ..|  +|.++..++.++.+
T Consensus       220 fSK~~~--~~GlRiG~~~~~~~~~~~~  244 (357)
T PRK14809        220 FSKAYG--LAGLRLGYAVVPEEWADAY  244 (357)
T ss_pred             chhHhc--CcchhheeeecCHHHHHHH
Confidence            999999  347  78888776654433

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=98.72  E-value=6.4e-06  Score=90.66  Aligned_cols=120  Identities=13%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             HHHcCCEEEEEeccCC---------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHHHH----HHHHhC
Q 007454          206 SEKRGARVMSAEFSWP---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYLWM----RIAQEN  271 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~---------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~~i----~~a~e~  271 (603)
                      ....|++++.++++..         .+.+|.++|++.|.++  ..++++++++..-+|.+ |..++.+.+    ++|+++
T Consensus       108 i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~--~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~  185 (431)
T cd00617         108 IEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV--GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKY  185 (431)
T ss_pred             HHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc--cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc
Confidence            3456888888887521         3569999999999742  12358899999999988 899987643    478999


Q ss_pred             CcEEEEeccccCCCC---------CCCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEeCC-CCcCcC
Q 007454          272 DWHILIDACALGPKD---------MDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV  329 (603)
Q Consensus       272 g~~vlvDAaq~~~~~---------m~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~L~  329 (603)
                      |++|+.|++++...-         -....+.+      ...|.+++|+||-++. |. -|++..+++ +...++
T Consensus       186 gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~-~~-GG~i~~~d~~l~~~~~  257 (431)
T cd00617         186 GIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLV-NI-GGFLALRDDELYEEAR  257 (431)
T ss_pred             CCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCC-cc-ceEEEeCcHHHHHHHH
Confidence            999999999764210         00111111      1489999999997765 43 235666653 544443

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=98.71  E-value=1.7e-06  Score=93.58  Aligned_cols=146  Identities=10%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             HHHHHHHHHc----C--CCCC-cEEEeccCc-hHHH---------------------HHHHHHHcCCEEEEEeccCCc-c
Q 007454          174 AMKKRIMDFL----N--ISEN-DYVYDYESE-AVEA---------------------MIRTSEKRGARVMSAEFSWPR-L  223 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~-e~vf~~es~-sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~-g  223 (603)
                      +.|+.|++++    |  ++++ +++.+..+. ++..                     ....++..|+++..++++..+ .
T Consensus        72 ~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  151 (388)
T PRK07366         72 DFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDF  151 (388)
T ss_pred             HHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCC
Confidence            6788888877    3  6777 576654332 2111                     123456679999998886322 3


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--c--CCCC-CCC-CCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--L--GPKD-MDS-FGLS  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~--~~~~-m~~-ldls  293 (603)
                      .++.+++++.+..      +++++.++.-+|.||..++.+.+    ..|+++|+++++|-+-  +  .+.. +.+ +++.
T Consensus       152 ~~d~~~l~~~~~~------~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~  225 (388)
T PRK07366        152 LPVFADIPTEVLA------QARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQAD  225 (388)
T ss_pred             CCCHHHHHHhhcc------cceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCC
Confidence            4677787776642      47888888889999999999743    3578999999999641  1  1210 001 1121


Q ss_pred             CCC-CcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          294 LVR-PDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       294 ~~~-~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      ..+ .-+++.||=|.||.+---+|.++..++++
T Consensus       226 ~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li  258 (388)
T PRK07366        226 PEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLI  258 (388)
T ss_pred             CCcccEEEEeecccccCCcchhheehcCCHHHH
Confidence            111 22567899999985322367777555544

>PRK08068 transaminase; Reviewed

Probab=98.71  E-value=1.5e-06  Score=93.98  Aligned_cols=147  Identities=12%  Similarity=0.152  Sum_probs=94.9

Q ss_pred             HHHHHHHHHc----C--CCCC-cEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCC-cc
Q 007454          174 AMKKRIMDFL----N--ISEN-DYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~-e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      +.|++|++++    |  ++++ +++.+..+. ++.                     .....++..|+++..++.+.. +.
T Consensus        74 ~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~  153 (389)
T PRK08068         74 FLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNF  153 (389)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCC
Confidence            6778888876    4  5677 676543321 111                     112345667899998888632 34


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--cC--CCCCCC-CCCC-
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--LG--PKDMDS-FGLS-  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~~--~~~m~~-ldls-  293 (603)
                      .++.++|++.+..      +++++.+..-+|.||..+|.+.+    ++|++++.++++|-+-  +.  +....+ +.+. 
T Consensus       154 ~~d~~~l~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~  227 (389)
T PRK08068        154 LPDYTKIPEEVAE------KAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPG  227 (389)
T ss_pred             CCCHHHHHHhccc------cceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCC
Confidence            5788889888753      46777777678999999999633    4578999999999863  11  110001 1111 


Q ss_pred             CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          294 LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      .....+++.|+=|.||.  .|  +|.++..+++++.+
T Consensus       228 ~~~~~i~~~S~SK~~g~--~GlRiG~~~~~~~l~~~l  262 (389)
T PRK08068        228 AKDVGIELYTLSKTFNM--AGWRVAFAVGNESVIEAI  262 (389)
T ss_pred             ccCCEEEEecchhccCC--ccceeEeEecCHHHHHHH
Confidence            11234788899999994  37  89888766554433

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=98.70  E-value=1.3e-05  Score=87.23  Aligned_cols=218  Identities=12%  Similarity=0.096  Sum_probs=127.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-cH---HHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-PY---LWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-pl---~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.|..      ++++|.+--..+..|.+. |.   +.+ ++|+++|+++++|=++.+ |..  |.....-...|
T Consensus       168 d~~~l~~~l~~------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~p  241 (397)
T TIGR03246       168 DLAAAKALISD------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTP  241 (397)
T ss_pred             CHHHHHHHhcc------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCC
Confidence            67888888852      577777777777888765 43   433 368999999999988632 110  11111112368


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |.++  +=|-+|+   |  +|++..++++++.+.....+++                                +  + .|
T Consensus       242 Di~t--~~K~lgg---G~pigav~~~~~i~~~~~~~~~~~t--------------------------------~--~-~~  281 (397)
T TIGR03246       242 DILT--SAKALGG---GFPIGAMLTTTEIAAHLKVGTHGTT--------------------------------Y--G-GN  281 (397)
T ss_pred             CEEE--eehhhhC---CcceeEEEEcHHHHHhccCCCcCCC--------------------------------C--C-CC
Confidence            9875  4676641   3  7888888877655542110000                                0  1 11


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ..+.++.               +                         ++|+.++.   +.+.++.+.+.++|.++|.++
T Consensus       282 p~~~aaa---------------~-------------------------a~l~~~~~---~~l~~~~~~~~~~l~~~L~~l  318 (397)
T TIGR03246       282 PLACAVA---------------G-------------------------KVLDLVNT---PELLAGVKQRHDLFVDGLEKI  318 (397)
T ss_pred             HHHHHHH---------------H-------------------------HHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence            1111111               1                         46665543   456778888999999999876


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      ...    .+++   +.-  ...|.++.+.+.+...+ . ...+.+.+.++||.+...                       
T Consensus       319 ~~~----~~~~---~~v--rg~G~~~~i~~~~~~~~-~-~~~~~~~l~~~Gv~~~~~-----------------------  364 (397)
T TIGR03246       319 NAR----YNVF---SEI--RGKGLLIGAVLTEAYQG-K-AKQFVNAAAEEGVIALIA-----------------------  364 (397)
T ss_pred             Hhc----CCCe---Eee--ecCceEEEEEEcCchhh-H-HHHHHHHHHHCCeEEeec-----------------------
Confidence            421    1222   110  12456666665431111 1 122333334467765320                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                       +.+++|+++.+..|.+||+++++.|.++++.
T Consensus       365 -----------------g~~~lR~~p~~~~t~~~i~~~~~~l~~~l~~  395 (397)
T TIGR03246       365 -----------------GPNVVRFAPSLVISDDDIDEGLARFERAIEQ  395 (397)
T ss_pred             -----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                             1258999999999999999999999988864

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=98.70  E-value=4e-06  Score=88.12  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=89.5

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDAC  280 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAa  280 (603)
                      ....+++.|.+|++++.+      +++.+++.|++      +|++|-+-...|.-+.+.|++.|+ +||++|+.++||-+
T Consensus       118 f~~tl~~~Gi~v~fvd~~------d~~~~~~aI~~------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT  185 (426)
T COG2873         118 FSHTLKRLGIEVRFVDPD------DPENFEAAIDE------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNT  185 (426)
T ss_pred             HHHHHHhcCcEEEEeCCC------CHHHHHHHhCc------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecC
Confidence            344568899999999764      47899999985      799999999999999999999775 89999999999987


Q ss_pred             ccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          281 ALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       281 q~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      =..|--+.|+   ++++|.|+-|.-||.|+.-+.+|..+|.....
T Consensus       186 ~atpyl~rP~---~hGADIVvHS~TK~igGhGt~iGG~iVD~G~F  227 (426)
T COG2873         186 FATPYLCRPI---EHGADIVVHSATKYIGGHGTAIGGVIVDGGKF  227 (426)
T ss_pred             CCcceecchh---hcCCCEEEEeecccccCCccccceEEEeCCcc
Confidence            5555422355   47899999999999886677789888876654

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=98.69  E-value=4.1e-06  Score=92.07  Aligned_cols=142  Identities=13%  Similarity=0.103  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcC--CC-CCcEEEeccCc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          173 SAMKKRIMDFLN--IS-ENDYVYDYESE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       173 ~~aR~~Ia~~ln--a~-~~e~vf~~es~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      .+.|+.|+++++  .. +++++.+..+.                      +-......++..|+++..++++ .++ ++.
T Consensus       124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~-~~g-~~~  201 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVD-AEG-MQP  201 (431)
T ss_pred             HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccC-CCC-CCH
Confidence            357788888876  33 45776654322                      1122234556789999999886 343 889


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEE-eCccccccccccHH----HHHHHHhC-CcEEEEeccc--cC--CCCCCCCCCCCCCC
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYL----WMRIAQEN-DWHILIDACA--LG--PKDMDSFGLSLVRP  297 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~pl~----~i~~a~e~-g~~vlvDAaq--~~--~~~m~~ldls~~~~  297 (603)
                      ++|++++..      +++++.+ |.-+|.||..++.+    ++.+|+++ +++|+.|-+-  +.  +.. ..+.. ...-
T Consensus       202 ~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~-~~~~~-~~~~  273 (431)
T PRK15481        202 EKLERALAQ------GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYH-SVIPQ-TTQR  273 (431)
T ss_pred             HHHHHHHhc------CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCC-CCCcC-CCCC
Confidence            999998863      3555554 68999999999995    33467888 9999999642  11  210 11221 1123


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      -+++-||-|.|| +---+|.++..+...
T Consensus       274 vi~~~SfSK~~~-~GlRiG~~i~~~~~~  300 (431)
T PRK15481        274 WALIRSVSKALG-PDLRLAFVASDSATS  300 (431)
T ss_pred             EEEEeeeccccC-CCceeEEEeCCHHHH
Confidence            488899999999 423378777655443

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=98.69  E-value=2e-06  Score=95.14  Aligned_cols=149  Identities=11%  Similarity=0.170  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHcC--------CCCCcEEEeccCch-HHHH---------------------HHHH-HHcCCEEEEEeccCC
Q 007454          173 SAMKKRIMDFLN--------ISENDYVYDYESEA-VEAM---------------------IRTS-EKRGARVMSAEFSWP  221 (603)
Q Consensus       173 ~~aR~~Ia~~ln--------a~~~e~vf~~es~s-V~~~---------------------~~~a-~~~Ga~V~~~~~~~~  221 (603)
                      ...|+.||++++        ++|++++.+..... +..+                     .... .+.|++++.++++..
T Consensus        98 ~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~  177 (447)
T PLN02607         98 KSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSS  177 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCC
Confidence            467888888875        57778876543221 1111                     1112 256888888887632


Q ss_pred             c-cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC----CCCCCCC-C
Q 007454          222 R-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG----PKDMDSF-G  291 (603)
Q Consensus       222 ~-g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~----~~~m~~l-d  291 (603)
                      + ..++.++|++.+..-++.+.+++++.++.-+|.||..+|-+.    +..|+++++++++|-+-..    .....++ .
T Consensus       178 ~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s  257 (447)
T PLN02607        178 NNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAE  257 (447)
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHH
Confidence            2 357899999988742223346888888999999999999753    3468999999999986321    1100111 0


Q ss_pred             C-CCCC----Cc--EEEEcccccCCCCCCceEEEEEe
Q 007454          292 L-SLVR----PD--FLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       292 l-s~~~----~D--flv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      + ...+    .+  .++-|+=|.||.+---+|+++..
T Consensus       258 ~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~  294 (447)
T PLN02607        258 IVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSY  294 (447)
T ss_pred             HHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEc
Confidence            0 0111    22  46789999998542237998873

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=98.68  E-value=2.7e-07  Score=93.94  Aligned_cols=232  Identities=14%  Similarity=0.163  Sum_probs=148.5

Q ss_pred             cCCEEEEEeccCCccccCHHHHHHHHhhcCCC--CCCeeEEEEeCcccccc-ccccHHHHH----HHHhCCcEEEEeccc
Q 007454          209 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKK--KKQRGLFVFPLHSRMTG-ARYPYLWMR----IAQENDWHILIDACA  281 (603)
Q Consensus       209 ~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~--~~~t~Lv~~~~~Sn~TG-~~~pl~~i~----~a~e~g~~vlvDAaq  281 (603)
                      .|+.++.+... +++-+++++++..|+..+..  -+.|+|+++---.|.+| ..+|++|+.    +|+++|..+|+|++-
T Consensus       119 ~gv~~~tv~~e-~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR  197 (384)
T KOG1368|consen  119 AGVHVRTVKNE-NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR  197 (384)
T ss_pred             ccceeEeeeeC-CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence            47778777766 68999999999999853211  35799999987777777 999999874    578999999999864


Q ss_pred             cCCCCC-CCCCCCCC--CCcEEEEcccccCCCCCCceEEEEE-eCCCCcC---cCCCCCCCceeccccccccccccccCC
Q 007454          282 LGPKDM-DSFGLSLV--RPDFLICSFYQIFGENPSGFGCLFV-KKSTVPI---LVDNTSSGMVSLLPAKKQLWLTDEFSS  354 (603)
Q Consensus       282 ~~~~~m-~~ldls~~--~~Dflv~S~hK~fG~~P~G~G~L~v-kk~~~~~---L~p~~~gG~v~~~~~~~~~~~~~~~~~  354 (603)
                      .+--.. .-+.++++  -.|-+.+.+-|-+|. |  +|-.+| .++++.+   ++..+.||+                  
T Consensus       198 i~NAavasgV~vk~i~~~fDSVsiCLSKglgA-P--VGSViVG~k~FI~kA~~~RKalGGGm------------------  256 (384)
T KOG1368|consen  198 IFNAAVASGVPVKKICSAFDSVSICLSKGLGA-P--VGSVIVGSKDFIDKARHFRKALGGGM------------------  256 (384)
T ss_pred             hhhHHHHcCCCHHHHHHhhhhhhhhhhccCCC-C--cccEEEccHHHHHHHHHHHHHhcCch------------------
Confidence            332100 12233332  478999999999998 6  454444 5555432   222222233                  


Q ss_pred             CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454          355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL  434 (603)
Q Consensus       355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl  434 (603)
                                          --.|+++.+             ++                         -+|++... -+
T Consensus       257 --------------------RQsGvLaaa-------------aL-------------------------val~~~~~-~L  277 (384)
T KOG1368|consen  257 --------------------RQSGVLAAA-------------AL-------------------------VALDENVP-LL  277 (384)
T ss_pred             --------------------hHHHHHHHH-------------HH-------------------------HHhhcchH-HH
Confidence                                111222211             11                         24443221 24


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454          435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      ..-.++.+.|++++.    ++.        .+++.-|.   -...++..++...   .+.++.+.+.++++||-+=.|  
T Consensus       278 ~~dHk~A~~lAe~~~----~~~--------~i~v~v~a---~etNiv~~~l~q~---~~~~~~l~~~~~k~gi~lm~~--  337 (384)
T KOG1368|consen  278 RADHKRAKELAEYIN----TPE--------EIRVEVPA---VETNIVNMVLCQA---RLTAEELCKFLEKNGILLMGG--  337 (384)
T ss_pred             HHHHHHHHHHHHHhc----ccc--------ceeeecch---hhcceeeeecccc---cCCHHHHHHHHHHCCeEEeec--
Confidence            455666677777665    221        14554442   3466888887443   377888888888999876433  


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                                                            ...-+|++|++--|.+||+.+...+++
T Consensus       338 --------------------------------------~s~r~Rivlh~Qvt~~~ve~~~~~~~k  364 (384)
T KOG1368|consen  338 --------------------------------------ASRRIRIVLHHQVTDEDVEYVKSVLSK  364 (384)
T ss_pred             --------------------------------------cccceEEEEEEecCHHHHHHHHHHHHH
Confidence                                                  012489999999999999999999944

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=98.68  E-value=3e-07  Score=92.48  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHcCCCCCcEEE--------------------eccCchHHHHHHHHHHcCCEEEEEecc-CCccccCHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVY--------------------DYESEAVEAMIRTSEKRGARVMSAEFS-WPRLRINSEKL  230 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf--------------------~~es~sV~~~~~~a~~~Ga~V~~~~~~-~~~g~i~~~~L  230 (603)
                      +.+-.+.+++|||.+.-.+.-                    .-.++++-..--+|++.|.+|..+|-. .|.-+|+++..
T Consensus        63 I~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y  142 (382)
T COG1103          63 IKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGY  142 (382)
T ss_pred             HHHHHHHHHHHhCCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHH
Confidence            455666689999987655510                    112333333334578899999999842 46678999998


Q ss_pred             HHHHhhcCCC-CCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccC
Q 007454          231 RKMVVSKGKK-KKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF  308 (603)
Q Consensus       231 ~~~l~~~~~~-~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~f  308 (603)
                      ...|..-+++ ...+.|..++|+...-|...|...++ +|+++|+++||.+|-.+|.  .|++..+.++||++.|+||-+
T Consensus       143 ~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Gr--mpvs~ke~g~DFiVgSGHKsm  220 (382)
T COG1103         143 AEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGR--MPVSGKEIGADFIVGSGHKSM  220 (382)
T ss_pred             HHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecc--ccccccccCCCEEEecCccch
Confidence            8888753333 24689999999999999999998665 8999999999999999998  699999999999999999976


Q ss_pred             CCCCCceEEEEEeCCCCc
Q 007454          309 GENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       309 G~~P~G~G~L~vkk~~~~  326 (603)
                      .. -.=+|+|-++.+..+
T Consensus       221 AA-s~PiGvl~~~eE~ae  237 (382)
T COG1103         221 AA-SAPIGVLAMSEEWAE  237 (382)
T ss_pred             hc-cCCeeEEeehhHHHH
Confidence            52 222899999988754

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=98.68  E-value=3.7e-06  Score=91.17  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHc--------CCCCC-cEEEeccCc-hHHH-----------------------HHHHHHHcCCEEEEEecc
Q 007454          173 SAMKKRIMDFL--------NISEN-DYVYDYESE-AVEA-----------------------MIRTSEKRGARVMSAEFS  219 (603)
Q Consensus       173 ~~aR~~Ia~~l--------na~~~-e~vf~~es~-sV~~-----------------------~~~~a~~~Ga~V~~~~~~  219 (603)
                      .+.|+.|++++        |++++ +++.+..++ ++..                       ....++..|+++..++.+
T Consensus        67 ~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~  146 (393)
T TIGR03538        67 PELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCT  146 (393)
T ss_pred             HHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeecc
Confidence            36788888887        46675 576543321 1111                       123345568888888775


Q ss_pred             CC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc--CCC-CCCCCC
Q 007454          220 WP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL--GPK-DMDSFG  291 (603)
Q Consensus       220 ~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~--~~~-~m~~ld  291 (603)
                      .. +..++.++|++.+..      +++++.++.-+|.||..++.+.    ++.|++++++|++|-+-.  ... ...+..
T Consensus       147 ~~~~~~~d~~~l~~~~~~------~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~  220 (393)
T TIGR03538       147 AENGFLPDFDAVPESVWR------RCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAG  220 (393)
T ss_pred             ccCCCCCCHHHHHHHHhh------cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcC
Confidence            22 235788899888753      5788888899999999999642    346789999999998621  110 000111


Q ss_pred             ----CCCCCC-----cEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          292 ----LSLVRP-----DFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       292 ----ls~~~~-----Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                          +...+.     =+++.|+-|.||.+-.-+|+++..++++
T Consensus       221 ~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~  263 (393)
T TIGR03538       221 LLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEIL  263 (393)
T ss_pred             HHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHHH
Confidence                011111     2788999998874322278777655443

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.68  E-value=1.3e-05  Score=87.70  Aligned_cols=142  Identities=14%  Similarity=0.157  Sum_probs=91.0

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHHHH---------------------HHHHHHcCCEEEEEeccC-Cccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVEAM---------------------IRTSEKRGARVMSAEFSW-PRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~~~---------------------~~~a~~~Ga~V~~~~~~~-~~g~  224 (603)
                      +.|+.|++++      ++++++++++..+. ++..+                     ...++..|+++..++.+. .+..
T Consensus        78 ~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (409)
T PLN00143         78 PARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWE  157 (409)
T ss_pred             HHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCc
Confidence            5788888887      46788887764332 22111                     233455688888877631 2346


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc--C--CCCCCCCC-CCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL--G--PKDMDSFG-LSLV  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~--~--~~~m~~ld-ls~~  295 (603)
                      ++.++|++++..      +++++++..-+|.||.+++.+.+    ..|+++++++++|-+-.  .  +....++. +...
T Consensus       158 ~d~~~l~~~~~~------~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~  231 (409)
T PLN00143        158 VDLDAVEAIADE------NTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASI  231 (409)
T ss_pred             CCHHHHHHhccc------CCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhccc
Confidence            889999887753      46777777789999999997632    45789999999998621  1  11001111 1111


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEe
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ..=+++.||=|.||.+---+|.++..
T Consensus       232 ~~vi~~~SfSK~f~~pGlRvG~~v~~  257 (409)
T PLN00143        232 VPVITLGSISKRWMIPGWGLGWLVTC  257 (409)
T ss_pred             CcEEEEccchhhcCCCccceEEEEee
Confidence            12278899999988532237888773

>PRK08636 aspartate aminotransferase; Provisional

Probab=98.67  E-value=3.6e-06  Score=91.66  Aligned_cols=148  Identities=12%  Similarity=0.148  Sum_probs=88.1

Q ss_pred             HHHHHHHHHc----C--CCCC-cEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCC-cc
Q 007454          174 AMKKRIMDFL----N--ISEN-DYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~-e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      ..|+.|++++    |  ++++ +++.+..++ ++.                     .....++..|+++..+++++. +.
T Consensus        75 ~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~  154 (403)
T PRK08636         75 KLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDF  154 (403)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccC
Confidence            5677777776    5  4566 587654432 111                     122345567889988887532 24


Q ss_pred             ccCHHHH----HHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc----CCCCCCC-C
Q 007454          224 RINSEKL----RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL----GPKDMDS-F  290 (603)
Q Consensus       224 ~i~~~~L----~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~----~~~~m~~-l  290 (603)
                      .++.+.|    ++.+...   +.+++++.+..-+|.||..+|.+.    ++.|++++++++.|-+-.    -+....+ .
T Consensus       155 ~~d~~~l~~~l~~~~~~~---~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~  231 (403)
T PRK08636        155 ELDEDQFFENLEKALRES---SPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSIL  231 (403)
T ss_pred             ccChhhhhhHHHHHHhhc---cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChh
Confidence            6776654    4444321   235788877766899999999963    246899999999997521    1210011 1


Q ss_pred             CCCCCCCc--EEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          291 GLSLVRPD--FLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       291 dls~~~~D--flv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      .+.. ..|  +++.|+-|.||.+---+|.++..++++
T Consensus       232 ~~~~-~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li  267 (403)
T PRK08636        232 EVEG-AKDVAVESYTLSKSYNMAGWRVGFVVGNKKLV  267 (403)
T ss_pred             cCCC-ccccEEEEEecccccCCccceeeeeeCCHHHH
Confidence            1211 123  346799999985322377776555443

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=98.67  E-value=6e-06  Score=88.45  Aligned_cols=145  Identities=10%  Similarity=0.098  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHHH--------------------HHHHHHHcCCEEEEEeccCCccc----cCH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVEA--------------------MIRTSEKRGARVMSAEFSWPRLR----INS  227 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~~--------------------~~~~a~~~Ga~V~~~~~~~~~g~----i~~  227 (603)
                      ...|+.|++++++++++++.+..+. ++..                    ....++..|.++..++.+...+.    .+.
T Consensus        60 ~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~  139 (360)
T PRK07392         60 RELRLALAQHHQLPPEWILPGNGAAELLTWAGRELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRL  139 (360)
T ss_pred             HHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhCCCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCH
Confidence            4789999999999999997764332 2221                    23345567888888877522221    344


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc--cCCCC-CCC-CC-CCCCCCcEEE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA--LGPKD-MDS-FG-LSLVRPDFLI  301 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq--~~~~~-m~~-ld-ls~~~~Dflv  301 (603)
                      +++++..       +++++++++--+|.||..++-+.+ ++++++++ +++|-+-  +.... ..+ +. +....-=+++
T Consensus       140 ~~~~~~~-------~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i  211 (360)
T PRK07392        140 QTLPPQL-------TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIIL  211 (360)
T ss_pred             HHHHHhc-------cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEE
Confidence            4443322       257899999999999999998865 57888886 5668752  11110 001 11 1111112677


Q ss_pred             EcccccCCCCCCceEEEEEeCCCC
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      .|+=|.||.+---+|.++...+.+
T Consensus       212 ~S~SK~~~l~GlRiG~~v~~~~~~  235 (360)
T PRK07392        212 RSLTKFYSLPGLRLGYAIAHPDRL  235 (360)
T ss_pred             EechhhhcCCchheeeeeCCHHHH
Confidence            899999984322378887665543

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=98.66  E-value=1.6e-06  Score=92.88  Aligned_cols=144  Identities=15%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             HHHHHHHHHc-------CCCCCcEEEeccCc-hHHHHHHHH-HHcCCEEEEEeccCCcccc----------CHHHHHHHH
Q 007454          174 AMKKRIMDFL-------NISENDYVYDYESE-AVEAMIRTS-EKRGARVMSAEFSWPRLRI----------NSEKLRKMV  234 (603)
Q Consensus       174 ~aR~~Ia~~l-------na~~~e~vf~~es~-sV~~~~~~a-~~~Ga~V~~~~~~~~~g~i----------~~~~L~~~l  234 (603)
                      +.|+.|++++       |+++++++.+..+. ++..+.... .+.|..|......|+....          ..+++. .+
T Consensus        60 ~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~l  138 (357)
T TIGR03539        60 ELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADDPT-EL  138 (357)
T ss_pred             HHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCChh-hc
Confidence            4566666666       57789998877543 444443433 3567777765544322110          000111 11


Q ss_pred             hhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc--C--CCCCCCCCCC----CCCCcEEEE
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL--G--PKDMDSFGLS----LVRPDFLIC  302 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~--~--~~~m~~ldls----~~~~Dflv~  302 (603)
                      .     ..+++++.++..+|.||..+|.+.    ++.|+++|+++++|.+..  .  +..+..++..    ...--+++.
T Consensus       139 ~-----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  213 (357)
T TIGR03539       139 D-----PVGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVH  213 (357)
T ss_pred             C-----ccCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEe
Confidence            1     136889999999999999999763    246899999999998743  1  1100111111    011247888


Q ss_pred             cccccCCCCCCc--eEEEEEeCCCC
Q 007454          303 SFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      |+-|.||.  .|  +|.++..++.+
T Consensus       214 S~SK~~~~--~G~R~G~~i~~~~~~  236 (357)
T TIGR03539       214 SLSKRSNL--AGYRAGFVAGDPALV  236 (357)
T ss_pred             ccccccCC--CceeEEEEecCHHHH
Confidence            99999984  36  68877655543

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=98.66  E-value=1.7e-05  Score=86.43  Aligned_cols=93  Identities=12%  Similarity=0.210  Sum_probs=60.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      |.+++++.+..      ++++|++--.++..|...|    ++.+ .+|+++|+++++|=++.+ +.+  +.+.......|
T Consensus       173 d~~~l~~~l~~------~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p  246 (403)
T PRK05093        173 DLAAVKAVIDD------HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTP  246 (403)
T ss_pred             CHHHHHHHhcC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCC
Confidence            57788887752      5777776656555565543    4544 479999999999987542 211  11222233468


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      |++++|  |.+|  | |  +|+++.++++++.+.
T Consensus       247 di~s~s--K~l~--~-G~rig~vv~~~~i~~~l~  275 (403)
T PRK05093        247 DILTSA--KALG--G-GFPIGAMLTTAEIASHFK  275 (403)
T ss_pred             CEEEec--cccc--C-CcceEEEEEcHHHHhhcC
Confidence            976654  9887  3 7  999999888765554

>PRK07049 methionine gamma-lyase; Validated

Probab=98.66  E-value=1.2e-06  Score=96.37  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh------CCcEEEEe
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE------NDWHILID  278 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e------~g~~vlvD  278 (603)
                      +++.|+++..++.     ..+.++|++.|... ..+++++++.+..-+|.||.++|++.+ ++++.      +++.|++|
T Consensus       143 l~~~Gi~~v~~~~-----~~d~~~l~~~l~~~-~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvD  216 (427)
T PRK07049        143 FRNFGVGAVGFAD-----GLSEAAIGAAAEAA-AAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACD  216 (427)
T ss_pred             HHhcCcEEEEEeC-----CCCHHHHHHHHHhh-ccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEE
Confidence            4456776554431     13567787777531 112468999999999999999999966 46766      79999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      -+-..+....++   ..+.|.++.|+-|.||+ ..|  +|+++.+++..
T Consensus       217 ety~~~~~~~pl---~~g~divv~S~SK~~gG-~~glr~G~vv~~~~l~  261 (427)
T PRK07049        217 NTLLGPVFQKPL---EHGADLSVYSLTKYVGG-HSDLVAGAVLGRKALI  261 (427)
T ss_pred             CCccccccCCcc---ccCCCEEEEcCceeecC-CCCcEEEEEECCHHHH
Confidence            874433311233   34789999999999984 223  66666555443

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=98.66  E-value=8.3e-06  Score=89.76  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=81.8

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      .++.|++|.++.+     .++.++++++|++      +|++|.+-.-+|.+|.+.|++.| ++|+++|+.+++|++-..|
T Consensus       121 l~~~Gi~v~~vd~-----~~d~~~l~~~I~~------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP  189 (432)
T PRK06702        121 LRKLGIDVTFFNP-----NLTADEIVALAND------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATP  189 (432)
T ss_pred             HHHCCCEEEEECC-----CCCHHHHHHhCCc------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCch
Confidence            5778999998854     3578899999874      68888888999999999999955 5899999999999986544


Q ss_pred             CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          285 KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       285 ~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      -   -...-++++|.++-|.-|+.|++-.++|.+.+.
T Consensus       190 ~---~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~  223 (432)
T PRK06702        190 Y---LCQAFEHGANIIVHSTTKYIDGHASSLGGIVID  223 (432)
T ss_pred             h---hCChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence            2   122235789999999999988766678877773

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=98.64  E-value=6.2e-06  Score=90.83  Aligned_cols=143  Identities=14%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccC-chHHHHH---------------------HHHHHcCCEEEEEecc-CCcc
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYES-EAVEAMI---------------------RTSEKRGARVMSAEFS-WPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~~---------------------~~a~~~Ga~V~~~~~~-~~~g  223 (603)
                      .+.|+.|+++++      +++++++++... +++..+.                     ..+...|+++..+++. ..+.
T Consensus        97 ~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~  176 (430)
T PLN00145         97 LPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGW  176 (430)
T ss_pred             HHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCC
Confidence            478889999884      467788765432 2222222                     2334457777777653 1245


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc--C--CCCCCCC-CCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--G--PKDMDSF-GLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~--~--~~~m~~l-dls~  294 (603)
                      .++.++|++++..      +++++++..-+|.||.++|.+    ++++|+++|++|++|.+-.  .  +....++ .+..
T Consensus       177 ~~d~~~l~~~~~~------~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~  250 (430)
T PLN00145        177 EVDLEGVEALADE------NTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGE  250 (430)
T ss_pred             cCCHHHHHHHhCc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcc
Confidence            6899999888753      588889988999999999954    2346899999999998621  1  1100111 1122


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ...=+++.|+=|.|+.|---+|.+++.
T Consensus       251 ~~~vi~~~S~SK~~~~pG~RlG~iv~~  277 (430)
T PLN00145        251 VAPVLTLGSISKRWVVPGWRLGWIATC  277 (430)
T ss_pred             cCcEEEEeccccccCCCCeeEEEEEEe
Confidence            223478889999988531227888763

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=98.64  E-value=2.8e-05  Score=83.68  Aligned_cols=92  Identities=13%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.+.+      +++++.+-...+.+|...+    ++.+ ++|+++|+++++|-++.+ +..  +..+......+
T Consensus       156 d~~~l~~~~~~------~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~  229 (377)
T PRK02936        156 DIKALKEVMNE------EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDP  229 (377)
T ss_pred             CHHHHHHhccC------CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCC
Confidence            56778877752      5788888777788887643    5544 478999999999988642 211  11111123357


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      |.+  ++-|.+|  + |  +|++..++++.+.+
T Consensus       230 di~--t~sK~l~--~-G~~ig~v~~~~~~~~~~  257 (377)
T PRK02936        230 DIV--TVAKGLG--N-GIPVGAMIGKKELGTAF  257 (377)
T ss_pred             cEE--EEccccc--C-CCccEEEEEcHHHHhhc
Confidence            854  5789888  2 5  78888877765444

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=98.63  E-value=2.7e-06  Score=91.21  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=85.0

Q ss_pred             HHHHHHHHHc----C---CCCCcEEEeccCc-hHHHHHHHH-HHcCCEEEEEeccCCcccc----------CHHHHHHHH
Q 007454          174 AMKKRIMDFL----N---ISENDYVYDYESE-AVEAMIRTS-EKRGARVMSAEFSWPRLRI----------NSEKLRKMV  234 (603)
Q Consensus       174 ~aR~~Ia~~l----n---a~~~e~vf~~es~-sV~~~~~~a-~~~Ga~V~~~~~~~~~g~i----------~~~~L~~~l  234 (603)
                      +.|+.|++++    |   +++++++.+..+. ++..+.... -+.|.+|..-...|+.-..          ..+.++. +
T Consensus        66 ~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-l  144 (364)
T PRK07865         66 ELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADSLTE-L  144 (364)
T ss_pred             HHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCChhh-C
Confidence            5677777777    3   6688998887654 443433443 2567666655444332110          0011111 1


Q ss_pred             hhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC-C---CCCCCCCCC----CCCCcEEEE
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG-P---KDMDSFGLS----LVRPDFLIC  302 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~-~---~~m~~ldls----~~~~Dflv~  302 (603)
                      .     ..+++++.+...+|.||.++|.+.    ++.|+++|+++++|.+-.. .   ..+..++..    ...-.+++.
T Consensus       145 ~-----~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  219 (364)
T PRK07865        145 G-----PQRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVH  219 (364)
T ss_pred             C-----cccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEe
Confidence            1     135788888888999999999852    3467899999999987331 1   100011100    112248899


Q ss_pred             cccccCCCCCCc--eEEEEEeCCCC
Q 007454          303 SFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      |+-|.||.  .|  +|.++..++.+
T Consensus       220 S~SK~~~~--~GlRiG~i~~~~~~~  242 (364)
T PRK07865        220 SLSKQSNL--AGYRAGFVAGDPALV  242 (364)
T ss_pred             echhccCC--CceeeEEEecCHHHH
Confidence            99999984  26  77776555443

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=98.62  E-value=6.5e-06  Score=87.54  Aligned_cols=140  Identities=14%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcC---CCCCcEEEeccCc------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHH
Q 007454          173 SAMKKRIMDFLN---ISENDYVYDYESE------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLR  231 (603)
Q Consensus       173 ~~aR~~Ia~~ln---a~~~e~vf~~es~------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~  231 (603)
                      .+.|+.|+++++   +++++++.+..+.                  +-......++..|+++..++.+ +++.++...  
T Consensus        59 ~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~--  135 (335)
T PRK14808         59 EELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-KDLRIPEVN--  135 (335)
T ss_pred             HHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHhCcEEECCCCHHHHHHHHHHcCCeEEEecCC-CcCCCChhH--
Confidence            478999999999   8889987764331                  2222344567789999999886 345444221  


Q ss_pred             HHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecc--ccCCCCCCCCCCCCCCCcEEEEcccccC
Q 007454          232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDAC--ALGPKDMDSFGLSLVRPDFLICSFYQIF  308 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAa--q~~~~~m~~ldls~~~~Dflv~S~hK~f  308 (603)
                        +.       .++++.++.-+|.||..++.+.+. ++ +++.+|++|-+  -+.+..+.++ +....-=+++.|+=|.|
T Consensus       136 --~~-------~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~-~~~~~~vi~~~S~SK~~  204 (335)
T PRK14808        136 --VG-------EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGESYVDL-LKKYENLAVIRTFSKAF  204 (335)
T ss_pred             --cc-------CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHH-HHhCCCEEEEEechhhc
Confidence              21       368999999999999999998665 55 67999999975  2222211111 11222237778999999


Q ss_pred             CCCCCc--eEEEEEeCCCCcCc
Q 007454          309 GENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       309 G~~P~G--~G~L~vkk~~~~~L  328 (603)
                      |  ..|  +|+++..+++++.+
T Consensus       205 ~--l~GlRvG~~v~~~~~~~~l  224 (335)
T PRK14808        205 S--LAAQRIGYVVSSEKFIDAY  224 (335)
T ss_pred             c--CcccceEEEEeCHHHHHHH
Confidence            9  346  79999877665444

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.62  E-value=3.4e-05  Score=85.73  Aligned_cols=222  Identities=15%  Similarity=0.193  Sum_probs=133.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.|........++..|.+-.+....|.+.|    ++.+ ++|+++|+.+++|=+|.+ |..  |--.......|
T Consensus       214 d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~P  293 (459)
T PRK11522        214 NIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQP  293 (459)
T ss_pred             CHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCC
Confidence            567788877531111234545555445556899888    6655 479999999999988753 221  00111123469


Q ss_pred             cEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          298 DFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                      |.+++  =|-+|+   |   +|+++++++.++.+....+.                                   -.+|.
T Consensus       294 Divt~--gK~lgg---G~~Pigav~~~~~i~~~~~~~~~~-----------------------------------~~~T~  333 (459)
T PRK11522        294 DILCL--AKALGG---GVMPIGATIATEEVFSVLFDNPFL-----------------------------------HTTTF  333 (459)
T ss_pred             CEEEe--chhhhC---CCccceeEEEcHHHHHHhccCCcc-----------------------------------cCCCC
Confidence            98755  587663   3   79999988765433210000                                   01111


Q ss_pred             --Chhh-hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          375 --TFSG-PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       375 --n~~g-i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                        |..+ .+++                                         +.|+.+++   +.+.++++.+.++|.++
T Consensus       334 ~gnp~~~Aaal-----------------------------------------a~L~~i~~---~~l~~~~~~~g~~l~~~  369 (459)
T PRK11522        334 GGNPLACAAAL-----------------------------------------ATINVLLE---QNLPAQAEQKGDYLLDG  369 (459)
T ss_pred             CCCHHHHHHHH-----------------------------------------HHHHHHhc---chHHHHHHHHHHHHHHH
Confidence              1111 1111                                         46776654   34668899999999999


Q ss_pred             HhcCC--CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          452 LMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       452 L~~L~--h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      |+++.  |+.    .+..|-|      +|.++.+.+.+.+   ....+...+. ++||.++..                 
T Consensus       370 L~~l~~~~~~----~i~~VrG------~Gl~~giel~~~~---~~~~i~~~l~-~~Gvl~~~~-----------------  418 (459)
T PRK11522        370 FRQLAREYPD----LVQEARG------KGMLMAIEFVDNE---IGYNFASEMF-RQRVLVAGT-----------------  418 (459)
T ss_pred             HHHHHHhCCC----ceeeEEe------ceeEEEEEecCch---HHHHHHHHHH-HCCeEEEec-----------------
Confidence            98873  321    1123333      4778888886531   1222334444 478887521                 


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                           .....++|+.+....|.+||+++++.|.+.+++
T Consensus       419 ---------------------~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~  451 (459)
T PRK11522        419 ---------------------LNNAKTIRIEPPLTLTIEQCEQVLKAARKALAA  451 (459)
T ss_pred             ---------------------CCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                                 001248999999999999999999999998865

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=98.60  E-value=4.6e-06  Score=91.40  Aligned_cols=223  Identities=11%  Similarity=0.092  Sum_probs=132.1

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccc-ccHHHH----HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYLWM----RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i----~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~D  298 (603)
                      .+.+++.+........++..|.+.-+.+..|.+ .|-..+    ++|+++|+++++|-+|. .|..  +...+.....||
T Consensus       178 ~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PD  257 (412)
T TIGR02407       178 IAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPD  257 (412)
T ss_pred             HHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCC
Confidence            556777775321111245666665566678884 444433    36899999999999875 2210  112333456799


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ++++|  |++|  +.|  +|+++++++. ..+.+...+++                                +   +.|.
T Consensus       258 i~~~~--K~lg--~~G~pigav~~~~~~-~~~~~~~~~~T--------------------------------~---~gnp  297 (412)
T TIGR02407       258 IVCLS--KSIS--GYGLPLALTLIKPEL-DVWKPGEHNGT--------------------------------F---RGNN  297 (412)
T ss_pred             EEEec--hhcc--CCccceeEEEEchhh-hccCCCccCCC--------------------------------C---CccH
Confidence            99887  9988  556  8999998775 33322111100                                0   0122


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ-VDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~-~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      .+.++.                                        .+.++. +.   -+.+.++++.+.++|.++|+.+
T Consensus       298 l~~aaa----------------------------------------~a~l~~~i~---~~~l~~~~~~~g~~l~~~l~~l  334 (412)
T TIGR02407       298 LAFVTA----------------------------------------TAALEYYWS---DDAFEKAVQRKSEIIQERLDRI  334 (412)
T ss_pred             HHHHHH----------------------------------------HHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHH
Confidence            221110                                        045663 33   2467788888888888888765


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      ...    .|.+ + +..  ..+|.++.+.+.+.+   . ...+.+.+.++||.++..                       
T Consensus       335 ~~~----~~~~-~-~~v--rg~Gl~~~l~l~~~~---~-~~~~~~~~~~~Gv~v~~~-----------------------  379 (412)
T TIGR02407       335 VAE----YPEL-I-KQV--RGRGLMQGIECGDGD---L-AGKIAKAAFENGLIIETS-----------------------  379 (412)
T ss_pred             Hhh----CCCc-e-Eee--ecceeEEEEEecChH---H-HHHHHHHHHHCCCEEecc-----------------------
Confidence            321    1101 1 110  235677888886521   1 123344445678887531                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                     .....+||+++.+..|.+||+++++.|.+.|+
T Consensus       380 ---------------~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       380 ---------------GPNDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             ---------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence                           01124899999999999999999999998875

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.59  E-value=5.1e-05  Score=83.97  Aligned_cols=220  Identities=14%  Similarity=0.206  Sum_probs=128.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCCCCC---CCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKDMDS---FGLSLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~m~~---ldls~~~  296 (603)
                      +.+.+++.|........++..|.+--+...-|.+.|    ++.+ ++|+++|+.+++|=+|.+ |.. ..   .......
T Consensus       207 d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt-G~~~a~e~~gv~  285 (442)
T TIGR03372       207 DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT-GKMFACEHEGVQ  285 (442)
T ss_pred             CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc-ccchhhhhcCCC
Confidence            456677766421111234555555444456799888    7655 479999999999988753 221 11   1112346


Q ss_pred             CcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCC--CCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          297 PDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDN--TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~--~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      ||+++  +=|-+|.   |   +|+++.++++++.+...  .++++          +                       .
T Consensus       286 PDivt--~gK~lg~---G~~Pigavv~~~~i~~~~~~~~~~~~~T----------~-----------------------~  327 (442)
T TIGR03372       286 PDILC--LAKALGG---GVMPIGATIATEAVFSVLFDNPFLHTTT----------F-----------------------G  327 (442)
T ss_pred             CCeee--ehhhhcC---CcccceEEEecHHHHHhhhccCccccCC----------C-----------------------C
Confidence            99887  4586662   4   79999988876544210  00000          0                       0


Q ss_pred             CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                      | .+....+++                                         +.|+.+++-   .+.++++.+.++|.++
T Consensus       328 g-np~~~Aaa~-----------------------------------------a~L~~i~~~---~l~~~~~~~G~~l~~~  362 (442)
T TIGR03372       328 G-NPLACAAAL-----------------------------------------ATINELLEK---NLPAQAAIKGDFLLDG  362 (442)
T ss_pred             C-CHHHHHHHH-----------------------------------------HHHHHHHhc---cHHHHHHHHHHHHHHH
Confidence            1 111111111                                         467776553   3556778888888888


Q ss_pred             HhcCC--CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          452 LMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       452 L~~L~--h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      |.++.  ++.    .+..+-      .+|.++.+.+.+.+   ....++..+. ++||.++..                 
T Consensus       363 L~~l~~~~~~----~i~~vR------G~Gl~~giel~~~~---~~~~i~~~l~-~~Gvl~~~~-----------------  411 (442)
T TIGR03372       363 FQQLAAEYPD----LIIEAR------GKGLLMAIEFRDNE---IGYAFAKELF-QQNILVAGT-----------------  411 (442)
T ss_pred             HHHHHHhCCC----ceEEEe------cceEEEEEEeCChH---HHHHHHHHHH-HCCcEEeec-----------------
Confidence            87763  321    112232      25778888875421   1122334443 478877421                 


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                           .....++|+++....|.+|||++++.+.+.|
T Consensus       412 ---------------------~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       412 ---------------------LNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             ---------------------CCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence                                 0011489999999999999999999988753

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=98.56  E-value=1.9e-05  Score=86.18  Aligned_cols=217  Identities=12%  Similarity=0.138  Sum_probs=126.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-cHHH---H-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-PYLW---M-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-pl~~---i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.|..      +++.|.+--+....|.+. |.++   + ++|+++|+++++|=++.+ +..  +.........|
T Consensus       172 d~~~l~~~l~~------~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~p  245 (406)
T PRK12381        172 DLNSASALIDD------QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTP  245 (406)
T ss_pred             CHHHHHHhccC------CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCC
Confidence            56788887752      466666665554455443 3443   3 468999999999987632 221  11112223468


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |.+++  =|.+|  + |  +|++..++++++.+.+...+.+                                +  + .|
T Consensus       246 Di~t~--sK~l~--g-G~~ig~~~~~~~~~~~~~~~~~~~t--------------------------------~--~-~~  285 (406)
T PRK12381        246 DVLTT--AKALG--G-GFPIGAMLTTEKCASVMTVGTHGTT--------------------------------Y--G-GN  285 (406)
T ss_pred             CEEEe--hhhhh--C-CCceEEEEEcHHHHhhcCCCCCCCC--------------------------------C--C-CC
Confidence            97644  59876  2 4  8888888877654442111100                                0  1 11


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ....++..                                        ++|+.+..   ..+.++++.+.++|.++|.++
T Consensus       286 pl~~aaa~----------------------------------------a~l~~l~~---~~~~~~~~~~~~~l~~~L~~l  322 (406)
T PRK12381        286 PLASAVAG----------------------------------------KVLELINT---PEMLNGVKQRHDWFVERLNTI  322 (406)
T ss_pred             HHHHHHHH----------------------------------------HHHHHHhh---ccHHHHHHHHHHHHHHHHHHH
Confidence            11111111                                        45665542   356778888999999999876


Q ss_pred             CCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          456 QHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       456 ~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      ..    ..+.+ .+      ...|.++.+.+.+....  ....+...+.++||.+...                      
T Consensus       323 ~~----~~~~~~~v------rg~Gl~~~~~l~~~~~~--~~~~~~~~l~~~Gv~v~~~----------------------  368 (406)
T PRK12381        323 NA----RYGLFSEI------RGLGLLIGCVLNAEYAG--KAKQISQEAAKAGVMVLIA----------------------  368 (406)
T ss_pred             Hh----hCCCEEEE------ecCeEEEEEEecCchhh--HHHHHHHHHHHCCcEEeeC----------------------
Confidence            31    11212 11      12455667766542111  1123444555678887421                      


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                        +...||+++.+..|.+||+++++.|.++++.
T Consensus       369 ------------------g~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  399 (406)
T PRK12381        369 ------------------GPNVVRFAPALNISEEEITTGLDRFARACER  399 (406)
T ss_pred             ------------------CCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence                              1148999999999999999999999998864

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=98.54  E-value=2.3e-05  Score=87.28  Aligned_cols=150  Identities=13%  Similarity=0.169  Sum_probs=93.8

Q ss_pred             HHHHHHHHHcC--------CCCCcEEEeccCch-HHH---------------------HHHHHH-HcCCEEEEEeccC-C
Q 007454          174 AMKKRIMDFLN--------ISENDYVYDYESEA-VEA---------------------MIRTSE-KRGARVMSAEFSW-P  221 (603)
Q Consensus       174 ~aR~~Ia~~ln--------a~~~e~vf~~es~s-V~~---------------------~~~~a~-~~Ga~V~~~~~~~-~  221 (603)
                      +.|+.|+++++        +++++++.+..++. +..                     ....+. ..|++++.++.+. .
T Consensus        90 ~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~  169 (468)
T PLN02450         90 AFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSN  169 (468)
T ss_pred             HHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCcc
Confidence            58888888885        57888876543221 111                     112233 4799999988753 3


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc----CCCCCCC-CCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL----GPKDMDS-FGL  292 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~----~~~~m~~-ldl  292 (603)
                      +..++.++|++.+....+...+++++.++.-+|.||..+|.+.+    +.|++++++|++|-+-.    .+....+ +.+
T Consensus       170 ~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~  249 (468)
T PLN02450        170 GFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEV  249 (468)
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHH
Confidence            44678899988876421122357777777789999999998743    45789999999997522    1210011 111


Q ss_pred             C---------CCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          293 S---------LVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       293 s---------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      .         ...-=+++-|+=|.||.+---+|+++..+.
T Consensus       250 ~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~  289 (468)
T PLN02450        250 LKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDE  289 (468)
T ss_pred             hhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCH
Confidence            0         011126788999999843223898887644

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.54  E-value=2.7e-05  Score=83.74  Aligned_cols=299  Identities=14%  Similarity=0.063  Sum_probs=166.6

Q ss_pred             HHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc
Q 007454          179 IMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA  258 (603)
Q Consensus       179 Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~  258 (603)
                      .+..|++.|.+.|.+..-. -.+-+......|++.+.++++..++.||.+.|++.|.+      +|+-++..|.   -|.
T Consensus        65 aL~al~ig~GDeVI~ps~T-fvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~------~tKAIipVhl---~G~  134 (374)
T COG0399          65 ALLALAIGPGDEVIVPSFT-FVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITP------RTKAIIPVHL---AGQ  134 (374)
T ss_pred             HHHhcCCCCCCEEEecCCc-hHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHccc------CCeEEEEehh---ccC
Confidence            4455677775544332111 11112223346999999999987899999999999974      4776666654   799


Q ss_pred             cccHH-HHHHHHhCCcEEEEeccccCCCCCCCCCCCC--CCCcEEEEccc--ccCCCCCCc-eEEEEEeCCCC-cCcCCC
Q 007454          259 RYPYL-WMRIAQENDWHILIDACALGPKDMDSFGLSL--VRPDFLICSFY--QIFGENPSG-FGCLFVKKSTV-PILVDN  331 (603)
Q Consensus       259 ~~pl~-~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~--~~~Dflv~S~h--K~fG~~P~G-~G~L~vkk~~~-~~L~p~  331 (603)
                      .-+++ |+++|+++|++|+-||||+.|.   ...=+.  .--|+-+||||  |.++   +| =|+++.+.+-+ +.++ .
T Consensus       135 ~~dm~~i~~la~~~~l~vIEDaAqa~Ga---~y~gk~vGt~Gd~~~fSF~~~K~it---tgEGGav~tnd~ela~k~~-~  207 (374)
T COG0399         135 PCDMDAIMALAKRHGLPVIEDAAQAHGA---TYKGKKVGSFGDIGAFSFHATKNLT---TGEGGAVVTNDEELAEKAR-S  207 (374)
T ss_pred             CCCHHHHHHHHHHcCCeEEEEcchhccC---eecCcccccccceEEEEecCCCCcc---ccCceEEEeCCHHHHHHHH-H
Confidence            99998 6679999999999999998885   222111  12488888887  5665   34 45555555432 2222 1


Q ss_pred             CCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhc
Q 007454          332 TSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKN  410 (603)
Q Consensus       332 ~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~  410 (603)
                      +.. |.....  ...++.                    .+.|+.               ..-++|++.            
T Consensus       208 lr~hG~~~~~--~~~y~~--------------------~~~G~N---------------~rm~~iqAA------------  238 (374)
T COG0399         208 LRNHGLSRDA--VFKYLH--------------------EELGYN---------------YRLTEIQAA------------  238 (374)
T ss_pred             HHHhCcCCCc--ccccee--------------------eecccc---------------cCHHHHHHH------------
Confidence            111 432100  001110                    112221               011222222            


Q ss_pred             cCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC-CCCCEEEEEEccCC
Q 007454          411 ANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWK  489 (603)
Q Consensus       411 ~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~-~rg~ivsFnv~~~~  489 (603)
                                   .++.+++.  ++.+.++-+.+.++..+.|+++.        .+.+--+.... ..-.....-++.. 
T Consensus       239 -------------igl~QL~~--l~~~~~~R~~~a~~Y~~~l~~~~--------~~~~p~~~~~~~~~~~~~~i~~~~~-  294 (374)
T COG0399         239 -------------IGLAQLER--LDEINERRREIAQIYAEALKGLP--------GITLPPEPDGAVHAWHLYTILVDEE-  294 (374)
T ss_pred             -------------HHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC--------CccccCCCCCceeeeeeeEEEecCC-
Confidence                         24444443  67777777889999999998763        12211111100 0122333333332 


Q ss_pred             CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHH
Q 007454          490 REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFED  569 (603)
Q Consensus       490 g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eD  569 (603)
                        .+..+.+...+...||.  ++.++-+-...+.       .+... ..+...+..   ........+++=++..-|.+|
T Consensus       295 --~~~R~~l~~~L~~~gi~--~~~~~~P~~~~~~-------~~~~~-~~~~~~lp~---ae~~~~r~l~LP~~p~l~~~~  359 (374)
T COG0399         295 --GISRDALMESLKEAGVG--AVVYFRPLHLQPA-------YRQLG-YFPEGDLPN---AEDLSERILSLPLHPNLSEED  359 (374)
T ss_pred             --CCCHHHHHHHHHhCCCC--ceEEeeccccchh-------hhccc-ccccCCCch---HHHHhhCeEEccCCCCCCHHH
Confidence              24556677777777888  4445444222211       11110 000000000   011223589999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 007454          570 VYRLWAFVAQFLD  582 (603)
Q Consensus       570 Vd~l~~~l~~~l~  582 (603)
                      ++++++.|++++.
T Consensus       360 ~~~V~~~l~~~~~  372 (374)
T COG0399         360 VDRVIEALKEVLG  372 (374)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999874

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=98.54  E-value=1.9e-05  Score=84.92  Aligned_cols=145  Identities=16%  Similarity=0.304  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHcC-CCCCcEEEeccCchH-HH---------------------HHHHHHHcCCEEEEEeccCCccccCHH
Q 007454          172 ESAMKKRIMDFLN-ISENDYVYDYESEAV-EA---------------------MIRTSEKRGARVMSAEFSWPRLRINSE  228 (603)
Q Consensus       172 ~~~aR~~Ia~~ln-a~~~e~vf~~es~sV-~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~  228 (603)
                      ..+.|++++++.| .++++++-..-++.+ ..                     -...++..|+++..++.. + ..++.+
T Consensus        59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~-~-~~~d~~  136 (356)
T COG0079          59 YRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK-E-FRLDLD  136 (356)
T ss_pred             HHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEeccc-c-cccCHH
Confidence            3578999999999 677777543322211 11                     122355678888888876 3 678888


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHh--CCcEEEEecc--ccCCCCCCCCCCCCCCCc--EEE
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQE--NDWHILIDAC--ALGPKDMDSFGLSLVRPD--FLI  301 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e--~g~~vlvDAa--q~~~~~m~~ldls~~~~D--flv  301 (603)
                      .+...+..      +++||.+.-=+|.||...+.+.+. ++..  .++.|+||-|  -+.+.  ..+.+-. .++  ++.
T Consensus       137 ~~~~~~~~------~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~~--~~~~l~~-~~~nlivl  207 (356)
T COG0079         137 AILAAIRD------KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSPE--SSLELLK-YPPNLIVL  207 (356)
T ss_pred             HHHHhhhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCCc--hhhhhcc-CCCCEEEE
Confidence            88888863      589999999999999999998664 3332  2889999975  45553  2344333 355  666


Q ss_pred             EcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          302 CSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       302 ~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      =||=|.||-  -|  +|..+..+++++.|+
T Consensus       208 RTfSKa~gL--AGlRlGy~ia~~~~i~~l~  235 (356)
T COG0079         208 RTFSKAFGL--AGLRVGYAIANPELIAALN  235 (356)
T ss_pred             EecHHhhhc--chhceeeccCCHHHHHHHH
Confidence            799999995  25  677766666655443

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=98.52  E-value=2e-05  Score=83.54  Aligned_cols=134  Identities=12%  Similarity=0.152  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCchHHH--------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESEAVEA--------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRK  232 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~sV~~--------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~  232 (603)
                      ...|+.|+++++.  ++++.+..++....                    ....++..|+++..++         .+++++
T Consensus        52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~---------~~~~~~  120 (330)
T PRK05664         52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALPRLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELD---------EAEVEA  120 (330)
T ss_pred             HHHHHHHHHHhCC--CCEEECcCHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCeEEEec---------hhhHhh
Confidence            3678899999985  57776654432111                    1222333444444443         345555


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCCCCC-CCCCCCCCcEEEEccccc
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKDMDS-FGLSLVRPDFLICSFYQI  307 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~m~~-ldls~~~~Dflv~S~hK~  307 (603)
                      .+.       +++++++.--+|.||.++|.+.+    +.|+++|++|++|=+-.-.....+ ..+....-=+++-||-|.
T Consensus       121 ~~~-------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~  193 (330)
T PRK05664        121 ALD-------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKF  193 (330)
T ss_pred             hhc-------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecccc
Confidence            553       35555555557999999998633    346788999999976322110001 222211112789999999


Q ss_pred             CCCCCCc--eEEEEEeCCCCc
Q 007454          308 FGENPSG--FGCLFVKKSTVP  326 (603)
Q Consensus       308 fG~~P~G--~G~L~vkk~~~~  326 (603)
                      ||.  .|  +|.++..+++.+
T Consensus       194 ~gl--~GlRiG~~v~~~~l~~  212 (330)
T PRK05664        194 FGL--AGARLGFVLAEPALLR  212 (330)
T ss_pred             ccC--CCcceEEEEeCHHHHH
Confidence            994  26  788887665543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=98.52  E-value=1.2e-05  Score=87.33  Aligned_cols=130  Identities=13%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             HHHHHHHHcCCCCCcEEEecc-Cc-hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc
Q 007454          175 MKKRIMDFLNISENDYVYDYE-SE-AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH  252 (603)
Q Consensus       175 aR~~Ia~~lna~~~e~vf~~e-s~-sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~  252 (603)
                      +...++.++... ++++.... -. ...-+...+.+.|.+|.+++..      +.++|+++|++      +|++|-+-.-
T Consensus        83 i~~~l~~ll~~G-d~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~------d~~~l~~~l~~------~t~~v~~Esp  149 (386)
T PF01053_consen   83 ISAALLALLKPG-DHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPT------DLEALEAALRP------NTKLVFLESP  149 (386)
T ss_dssp             HHHHHHHHS-TT-BEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTT------SHHHHHHHHCT------TEEEEEEESS
T ss_pred             HHHHHHhhcccC-CceEecCCccCcchhhhhhhhcccCcEEEEeCch------hHHHHHhhccc------cceEEEEEcC
Confidence            444555665442 33433211 11 2222334566789999988753      57899999974      7999999999


Q ss_pred             cccccccccHHHH-HHHHhCC-cEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeC
Q 007454          253 SRMTGARYPYLWM-RIAQEND-WHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKK  322 (603)
Q Consensus       253 Sn~TG~~~pl~~i-~~a~e~g-~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk  322 (603)
                      +|.+..+.|++.+ ++||++| +.++||.+-..|....||+   +++|+++-|.-|.+++.  |   .|++.++.
T Consensus       150 sNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~pL~---~GaDivv~S~TKyl~Gh--sdv~~G~vv~~~  219 (386)
T PF01053_consen  150 SNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNPLE---LGADIVVHSATKYLSGH--SDVMGGAVVVNG  219 (386)
T ss_dssp             BTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-GGG---GT-SEEEEETTTTTTTS--SSE-EEEEEESS
T ss_pred             CCcccccccHHHHHHHHHHhCCceEEeeccccceeeeccCc---CCceEEEeeccccccCC--cceeeEEEEECc
Confidence            9999999999966 5899999 9999999866664223443   58999999999998743  5   56666554

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.51  E-value=0.00013  Score=80.70  Aligned_cols=97  Identities=16%  Similarity=0.237  Sum_probs=61.1

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~D  298 (603)
                      .++|+++|...  ..+++..|.+--+....|.+.|    ++.+ ++|+++|+++++|=+|. +|..  |.-.......||
T Consensus       201 ~~~le~~l~~~--~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PD  278 (442)
T PRK13360        201 ADELERLVTLH--DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPD  278 (442)
T ss_pred             HHHHHHHHHhc--CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCc
Confidence            35677777531  1134656666556667899988    7766 47999999999998773 3321  111122234699


Q ss_pred             EEEEcccccCCC--CCCceEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGE--NPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~--~P~G~G~L~vkk~~~~~L~  329 (603)
                      ++++  =|-+|+  -|  +|++.+++++++.+.
T Consensus       279 ivt~--gK~l~gG~~P--~gav~~~~~i~~~~~  307 (442)
T PRK13360        279 LLTC--AKGLTNGAIP--MGAVFVSSEIHDAFM  307 (442)
T ss_pred             eeee--eeccccCccc--eEEEEEcHHHHHHhh
Confidence            8755  586652  12  888888888765443

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=98.51  E-value=1.8e-05  Score=85.91  Aligned_cols=114  Identities=14%  Similarity=0.086  Sum_probs=74.3

Q ss_pred             HHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|+++..+|.+.. +..++.++|++.+..      +++++.++.-+|.||.+++.+.+    +.|+++++++++|-
T Consensus       133 ~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~------~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De  206 (396)
T PRK09147        133 AALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA------RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDE  206 (396)
T ss_pred             HHHhcCCEEEEeccCccccCccCHHHHHHHHhh------ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeec
Confidence            34456888888887522 236888999887753      57888888899999999998633    35789999999997


Q ss_pred             cc--cC--CCCCCCCC-C---CCCCCc-----EEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          280 CA--LG--PKDMDSFG-L---SLVRPD-----FLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       280 aq--~~--~~~m~~ld-l---s~~~~D-----flv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +-  +.  +.. .+.. +   ...+.|     +++.|+=|.||.+-.-+|.++..+.++
T Consensus       207 ~y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~  264 (396)
T PRK09147        207 CYSEIYFDEAA-PPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALL  264 (396)
T ss_pred             cccccccCCCC-CCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHHH
Confidence            52  21  100 0110 1   111222     888999998885312378777655443

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=98.51  E-value=2.5e-06  Score=92.85  Aligned_cols=152  Identities=12%  Similarity=0.077  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEe---------------------ccCchHHHHHHHHHHcCCEEEEEeccCCc----cc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYD---------------------YESEAVEAMIRTSEKRGARVMSAEFSWPR----LR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~---------------------~es~sV~~~~~~a~~~Ga~V~~~~~~~~~----g~  224 (603)
                      ..+.++.+..|+++|++..=|+-.                     -.-|++.++...+.-.|++.++++.....    +.
T Consensus        66 G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~~gi~~~  145 (417)
T PF01276_consen   66 GIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNEYGIIGG  145 (417)
T ss_dssp             THHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-TTS-BEE
T ss_pred             cHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccccCCccC
Confidence            567889999999999865533210                     01122333334445568999888764221    23


Q ss_pred             cCH-----HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC--CCCCCCCCCCCCC
Q 007454          225 INS-----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG--PKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~-----~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~--~~~m~~ldls~~~  296 (603)
                      |+.     +.++++|...... +..++++++.-+ --|+.++++.| ++||++|+.|+||.|..+  +-.-.+-+-...+
T Consensus       146 i~~~~~~~~~i~~~l~~~p~~-k~~~~vvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~g  223 (417)
T PF01276_consen  146 ISPDEFNEEDIEEALKEHPDA-KAPRLVVLTSPT-YYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALG  223 (417)
T ss_dssp             B-GGGGSHHHHHHHHHHCTTC-HCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTT
T ss_pred             CChhhhhHHHHHHHHHhCccc-cCceEEEEeCCC-CCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhcc
Confidence            455     9999999863221 125667777665 48999999955 589999999999986432  2111234445678


Q ss_pred             Cc-------EEEEcccccCCCCCCceEEEEEeCCC
Q 007454          297 PD-------FLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       297 ~D-------flv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      +|       +++-|.||..+. .+....|.+|.+.
T Consensus       224 ad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~  257 (417)
T PF01276_consen  224 ADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDR  257 (417)
T ss_dssp             SS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCC
T ss_pred             Cccccccceeeeechhhcccc-cccceEEEecCCC
Confidence            99       999999999887 8999999999875

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.50  E-value=0.00016  Score=80.14  Aligned_cols=227  Identities=12%  Similarity=0.115  Sum_probs=129.4

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Df  299 (603)
                      ++|++.|....  .++...|.+--+....|.+.|    ++.+ ++|+++|+.+++|=+|. .|..  |.-.+.....||+
T Consensus       205 ~~l~~~i~~~~--~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi  282 (445)
T PRK09221        205 DDLERLVALHD--ASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDI  282 (445)
T ss_pred             HHHHHHHHhcC--CCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCE
Confidence            56777775311  134655555556667899998    7766 48999999999999874 2220  1111222346898


Q ss_pred             EEEcccccCC--CCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          300 LICSFYQIFG--ENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       300 lv~S~hK~fG--~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++++  |-+|  +.|  +|++.+++++++.+.... ....       .+                      +..+|.. .
T Consensus       283 ~~~g--K~l~gG~~P--i~av~~~~~i~~~~~~~~-~~~~-------~~----------------------~~~~T~~-~  327 (445)
T PRK09221        283 ITFA--KGLTNGAIP--MGAVIASDEIYDAFMQGP-EYAI-------EF----------------------FHGYTYS-A  327 (445)
T ss_pred             EEec--cccccCccc--ceeeEEcHHHHHhhccCc-cccc-------cc----------------------ccccCCC-c
Confidence            7665  6543  113  788888888765543210 0000       00                      0011211 1


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .+++++.            ++                         +.|+.+.+-   .+.++++.+.++|.+.|.++. 
T Consensus       328 ~pl~~aa------------a~-------------------------a~L~~i~~~---~l~~~~~~~g~~l~~~l~~l~-  366 (445)
T PRK09221        328 HPVACAA------------GL-------------------------ATLDIYREE---DLFERAAELAPYFEDAVHSLK-  366 (445)
T ss_pred             CHHHHHH------------HH-------------------------HHHHHHHhc---cHHHHHHHHHHHHHHHHHhhc-
Confidence            1222220            11                         466666543   356788999999999998873 


Q ss_pred             CCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc-cCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          458 PNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK-IEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       458 ~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~-v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                          +.|.| .+-      .+|-++.+.+.+..... .....+.+.+-++||.++.+                       
T Consensus       367 ----~~~~v~~vr------g~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----------------------  413 (445)
T PRK09221        367 ----GLPHVIDIR------NIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-----------------------  413 (445)
T ss_pred             ----cCCCEEEEe------cCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-----------------------
Confidence                12222 111      24555566654422111 01122333344567776521                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                        ..++|+++.+..|.+||+++++.|.+.|++
T Consensus       414 ------------------~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~  443 (445)
T PRK09221        414 ------------------GDTIALSPPLIIEKAQIDELVDALGDALRA  443 (445)
T ss_pred             ------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence                              137999999999999999999999988753

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=98.49  E-value=2.7e-05  Score=84.99  Aligned_cols=143  Identities=14%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHHHHHHHHHH-----cCCEEEE-EeccCCc------------------
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVEAMIRTSEK-----RGARVMS-AEFSWPR------------------  222 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~~~~~~a~~-----~Ga~V~~-~~~~~~~------------------  222 (603)
                      +.|+.|++++      ++++++++.+..+. ++..+......     .|.+|.. ....++.                  
T Consensus        78 ~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~  157 (416)
T PRK09440         78 ELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNI  157 (416)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccccc
Confidence            6788888877      47888988877653 44444444432     3556655 2222211                  


Q ss_pred             ---------cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCCCCCC
Q 007454          223 ---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPKDMDS  289 (603)
Q Consensus       223 ---------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~~m~~  289 (603)
                               ..++.++|+  +      ..+++++.++.-+|.||.+++.+.    ++.|++++++|++|-+-.-...-..
T Consensus       158 ~~~~~~~~~~~~d~~~l~--~------~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~  229 (416)
T PRK09440        158 ELLPEGQFKYHVDFEHLH--I------DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGII  229 (416)
T ss_pred             ccccccccccCCCHHHcc--c------CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcc
Confidence                     123444443  1      135788889888999999999763    3467899999999987532210000


Q ss_pred             -CCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          290 -FGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       290 -ldls~--~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                       .++..  .+-=+++.||-|+ +.+-.-+|.++..++++
T Consensus       230 ~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~  267 (416)
T PRK09440        230 FSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEII  267 (416)
T ss_pred             hhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHH
Confidence             11111  1112667899996 64322377777655544

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=98.49  E-value=1.4e-05  Score=87.92  Aligned_cols=224  Identities=10%  Similarity=0.076  Sum_probs=129.9

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-C---CCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-P---KDMDSFGLSLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~---~~m~~ldls~~~  296 (603)
                      +.++|++.|.......+++..|.+--+....|.+.|    ++.+ ++|+++|+++++|-+|.+ |   + +...+.....
T Consensus       181 ~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~v~  259 (425)
T PRK09264        181 TLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGIT  259 (425)
T ss_pred             HHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcCCC
Confidence            456778888642111124555555444446787654    3444 479999999999998742 1   1 1122323457


Q ss_pred             CcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          297 PDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                      ||++++|  |.+|  +.|  +|++++++++. .+.+...+++          +                       .  .
T Consensus       260 PDi~t~~--K~l~--~~G~pigav~~~~~i~-~~~~~~~~~T----------~-----------------------~--g  299 (425)
T PRK09264        260 PDIVTLS--KSIS--GYGLPMALVLIKPELD-VWKPGEHNGT----------F-----------------------R--G  299 (425)
T ss_pred             CCEEEec--cccC--CCccceEEEEEchhhh-ccCCCccCCC----------C-----------------------C--C
Confidence            9999887  9887  546  49999987752 2221111000          0                       0  1


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL-DQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-d~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      |..+.++.               +                         +++ +.+.   -+.+.++++.+.++|.++|.
T Consensus       300 np~~~aaa---------------~-------------------------a~l~~~~~---~~~l~~~~~~~g~~l~~~l~  336 (425)
T PRK09264        300 NNLAFVTA---------------T-------------------------AALEEYWS---DDAFEKEVKAKGELVRERLE  336 (425)
T ss_pred             CHHHHHHH---------------H-------------------------HHHHHHHh---hhHHHHHHHHHHHHHHHHHH
Confidence            21221111               0                         355 3322   24677888889999998887


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      ++..    ..|.+ + +..  ...|.++.+.+.+..   . ...+.+.+-++||.++.+                     
T Consensus       337 ~l~~----~~~~~-~-~~v--rg~Gl~~~i~l~~~~---~-~~~l~~~~~~~Gv~~~~~---------------------  383 (425)
T PRK09264        337 EIAA----KYPGL-G-AEV--RGRGMMQGIDFGDGE---L-AGKIAAEAFENGLIIETS---------------------  383 (425)
T ss_pred             HHHH----hCCCc-e-ecc--eecccEEEEEecChH---H-HHHHHHHHHHCCCEEecc---------------------
Confidence            7631    01212 1 111  124677788775421   1 122344445678877531                     


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                       ......||+++.+..|.+||+++++.|.+.+..
T Consensus       384 -----------------~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~~  416 (425)
T PRK09264        384 -----------------GPEDEVVKLLPPLTIDEEELEEGLDILEEAVAE  416 (425)
T ss_pred             -----------------CCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                             011258999999999999999999999999876

>PRK15029 arginine decarboxylase; Provisional

Probab=98.47  E-value=7.2e-05  Score=87.15  Aligned_cols=152  Identities=14%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc---------------------CchHHHHHHHHHHcCCEEEEEeccCCc----cc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE---------------------SEAVEAMIRTSEKRGARVMSAEFSWPR----LR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e---------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~----g~  224 (603)
                      ..+.+|.+..|+++|++..=|+-.=.                     -|++.++...+.-.|++.+++...+..    +.
T Consensus       205 G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~Gi~~~  284 (755)
T PRK15029        205 GAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYGIIGP  284 (755)
T ss_pred             cHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccC
Confidence            57789999999999996544422111                     122333333445568888888765422    23


Q ss_pred             cC-----HHHHHHHHhhcCC----CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC--C-CCCCC--
Q 007454          225 IN-----SEKLRKMVVSKGK----KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG--P-KDMDS--  289 (603)
Q Consensus       225 i~-----~~~L~~~l~~~~~----~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~--~-~~m~~--  289 (603)
                      |+     .+.+++.|.....    ..++.+.++++.- +--|+.++++.| ..||++|..+|||.|..+  + +...|  
T Consensus       285 i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p~~  363 (755)
T PRK15029        285 IYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH  363 (755)
T ss_pred             CCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCeEEEECccccccccCcccccc
Confidence            44     8899999864221    1123446666654 458999999965 589999999999986433  1 10011  


Q ss_pred             CCC-----CCCCCc-EEEEcccccCCCCCCceEEEEEeCC
Q 007454          290 FGL-----SLVRPD-FLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       290 ldl-----s~~~~D-flv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      --+     ...++| +++-|.||..+. -+....|-++.+
T Consensus       364 sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~  402 (755)
T PRK15029        364 YAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREG  402 (755)
T ss_pred             ccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCC
Confidence            011     225799 999999999886 777777777543

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=98.46  E-value=8.5e-05  Score=81.46  Aligned_cols=186  Identities=16%  Similarity=0.187  Sum_probs=107.1

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||..+.      |.-++.+++++.+.+...                     .   .  ++ .......+.+++|+
T Consensus        46 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---------------------~---~--~~-~~~~~~~~lae~l~   98 (423)
T TIGR00713        46 DGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG---------------------T---S--YG-APTEAEILLAKEII   98 (423)
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC---------------------C---c--CC-CCCHHHHHHHHHHH
Confidence            57889997654      355688888877643211                     0   0  00 01133457888888


Q ss_pred             HHcCCCCCcEEEec-cCchHHHHHHHHHH--cCCEEEEEeccC-----------------------Cc---------cc-
Q 007454          181 DFLNISENDYVYDY-ESEAVEAMIRTSEK--RGARVMSAEFSW-----------------------PR---------LR-  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~-es~sV~~~~~~a~~--~Ga~V~~~~~~~-----------------------~~---------g~-  224 (603)
                      +++... +++.|.. -++++...++.++.  ..-+|....-.+                       +.         -. 
T Consensus        99 ~~~~~~-~~v~~~~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (423)
T TIGR00713        99 SRVPSV-EMVRFVNSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVL  177 (423)
T ss_pred             HhCCcc-cEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEe
Confidence            887543 4565543 24556555555442  122332211000                       00         00 


Q ss_pred             --cCHHHHHHHHhhcCCCCCCeeEEEE-eCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCC
Q 007454          225 --INSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKD--MDSFGLSL  294 (603)
Q Consensus       225 --i~~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~  294 (603)
                        -+.++|++.|...   .++++.|.+ |.++| +|.+.|    ++.+ ++|+++|+++++|=++.+-..  +.......
T Consensus       178 ~~~d~~~l~~~i~~~---~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~  253 (423)
T TIGR00713       178 PYNDLEALEEVFEEY---GEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFG  253 (423)
T ss_pred             CCCCHHHHHHHHHHc---CCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhC
Confidence              1678888888631   134555555 78888 899888    3444 478999999999988743210  01111123


Q ss_pred             CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          295 VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      ..||.+  ++=|.+|.   |  +|+++.++++++.+.
T Consensus       254 ~~pDi~--t~sK~l~~---G~pig~v~~~~~i~~~~~  285 (423)
T TIGR00713       254 VEPDLT--TLGKIIGG---GLPVGAFGGRREIMERLA  285 (423)
T ss_pred             CCcchh--hhhhhhcC---CCceeeeeEHHHHHHhhC
Confidence            458854  57898872   5  799999888776554

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=98.44  E-value=0.0002  Score=77.00  Aligned_cols=268  Identities=15%  Similarity=0.180  Sum_probs=161.7

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccC--chHHHHHHHHHHcCC-----EEEEEe------------ccCCc-----------c
Q 007454          174 AMKKRIMDFLNISENDYVYDYES--EAVEAMIRTSEKRGA-----RVMSAE------------FSWPR-----------L  223 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es--~sV~~~~~~a~~~Ga-----~V~~~~------------~~~~~-----------g  223 (603)
                      +.-+++.+..+  ..+.+|-.+|  +++...+..|++.+.     ++....            +.|..           +
T Consensus        88 ~la~~L~~~s~--~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g  165 (404)
T COG4992          88 ELAEKLVELSP--FADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPG  165 (404)
T ss_pred             HHHHHHHhhCc--cccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCC
Confidence            33344444444  2566665554  577777777776554     444332            11100           0


Q ss_pred             c-----cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HH---H-HHHhCCcEEEEeccccCC-CC--CCCC
Q 007454          224 R-----INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---R-IAQENDWHILIDACALGP-KD--MDSF  290 (603)
Q Consensus       224 ~-----i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i---~-~a~e~g~~vlvDAaq~~~-~~--m~~l  290 (603)
                      .     =|.+.|+++|.+      +|.-|.+=-..-+-|++.|-. .+   + +|+++|+++++|=+|.+- ..  |--.
T Consensus       166 ~~~vpfnDi~al~~ai~~------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~  239 (404)
T COG4992         166 FRHVPFNDIEALEAAIDE------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAY  239 (404)
T ss_pred             ceecCCCCHHHHHHHhcc------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHH
Confidence            0     178899999975      688777777778999988864 33   2 588999999999998773 11  1111


Q ss_pred             CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          291 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       291 dls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      .-....||.++..  |-+|+ --=+|+.+.++.....++|-..|.+          +                       
T Consensus       240 e~~gV~PDI~tla--K~LgG-G~PigA~la~~~~~~~~~~G~HgST----------f-----------------------  283 (404)
T COG4992         240 EHYGVEPDILTLA--KALGG-GFPIGAMLATEEIASAFTPGDHGST----------F-----------------------  283 (404)
T ss_pred             HHhCCCCCEEEee--ccccC-CccceeeEEchhhhhcCCCCcccCC----------C-----------------------
Confidence            1223469988764  75432 1228999998665555554322211          0                       


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .|  |   +++.++             .                        .++|+.+.+   +.+-++++.+.++|.+
T Consensus       284 GG--N---pLacAv-------------~------------------------~a~l~~l~~---e~ll~~v~~~g~~~~~  318 (404)
T COG4992         284 GG--N---PLACAV-------------A------------------------LAVLEVLLE---EGLLENVREKGEYLLQ  318 (404)
T ss_pred             Cc--C---HHHHHH-------------H------------------------HHHHHHHcc---hhHHHHHHHHHHHHHH
Confidence            01  1   122220             0                        146666554   5667788999999999


Q ss_pred             HHhcCCCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          451 ALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      +|.+|.++.    |+| .|-      -+|=++..-+....   ..+..+ +.+..+|+-+-.                  
T Consensus       319 ~L~~l~~~~----~~v~~vR------G~GLmiGiel~~~~---~a~~~~-~~~~~~gvL~~~------------------  366 (404)
T COG4992         319 RLRELKRRY----PLVKEVR------GRGLMIGIELKEPY---RARDIV-RALREEGVLVLP------------------  366 (404)
T ss_pred             HHHHHhhcC----Cceeeee------cceeEEEEEecCcc---cHHHHH-HHHHHCCeEEec------------------
Confidence            999986532    322 222      24667777776532   123334 444455654310                  


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                            .+..+||+.+...-+.|||+..++.+++.+...
T Consensus       367 ----------------------a~~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~  399 (404)
T COG4992         367 ----------------------AGPNVIRFLPPLVITEEEIDEALDALERALAAA  399 (404)
T ss_pred             ----------------------CCCCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence                                  112499999999999999999999999988753

>PRK06541 hypothetical protein; Provisional

Probab=98.44  E-value=0.00023  Score=79.21  Aligned_cols=228  Identities=13%  Similarity=0.083  Sum_probs=131.4

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC---CCCCCCCCc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS---FGLSLVRPD  298 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~---ldls~~~~D  298 (603)
                      +.|++.+...  ..+.+..|.+--+.+..|.+.|    ++.+ ++|+++|+++++|=++. +|.. ..   ...-...||
T Consensus       208 ~~l~~~l~~~--~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~-G~~~a~~~~gv~PD  284 (460)
T PRK06541        208 DRIEEAIEFE--GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRL-GEMFGCERFGYVPD  284 (460)
T ss_pred             HHHHHHHHhc--CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC-chhhhhhhcCCCCC
Confidence            5677777521  1135666666667778999988    6655 47999999999998762 3321 11   111123699


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      +++  +=|.+|..=.-+|+++.+++.++.+.+..  +..                               +-.+|..- .
T Consensus       285 ivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~--~~~-------------------------------~~~~T~~g-n  328 (460)
T PRK06541        285 IIT--CAKGITSGYSPLGAMIASDRLFEPFLDGP--TMF-------------------------------LHGYTFGG-H  328 (460)
T ss_pred             EEE--ecccccCCccceeEEEEcHHHHHHhhcCC--Ccc-------------------------------ccCCCCCC-C
Confidence            886  46866620001799999888765443211  000                               00112110 0


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      +++++            +++                         +.++.+..   +.+.++++.+.++|.++|.++.. 
T Consensus       329 p~~~a------------aal-------------------------a~l~~l~~---~~~~~~~~~~g~~l~~~L~~l~~-  367 (460)
T PRK06541        329 PVSAA------------VAL-------------------------ANLDIFER---EGLLDHVRDNEPAFRATLEKLLD-  367 (460)
T ss_pred             HHHHH------------HHH-------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHhhc-
Confidence            11111            011                         35565543   34567888999999999988731 


Q ss_pred             CCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC--------HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          459 NTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE--------PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       459 ~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~--------~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                          .|.| .+.|      .|.++.+.+.+...  +...        ...+.+.+-++||.++..               
T Consensus       368 ----~~~v~~vrg------~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------  422 (460)
T PRK06541        368 ----LPIVGDVRG------DGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRAD---------------  422 (460)
T ss_pred             ----CCCeEEEEe------cceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEec---------------
Confidence                2322 2222      46777777743211  1110        012333344578776531               


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             ..+..+||+++.+..|.+||+++++.|.+.+.+
T Consensus       423 -----------------------~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~  455 (460)
T PRK06541        423 -----------------------DRGDPVVQLAPPLISGQEEFDEIEQILRSVLTE  455 (460)
T ss_pred             -----------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                   011248999999999999999999999998864

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.42  E-value=8.6e-05  Score=78.95  Aligned_cols=317  Identities=13%  Similarity=0.098  Sum_probs=184.0

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch--HHHHHHHHHHHHHHHcCCCCCcEEE
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ--ESGLESAMKKRIMDFLNISENDYVY  192 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~--~~~~~~~aR~~Ia~~lna~~~e~vf  192 (603)
                      |+=...|+.|++++-..+++-                 |.-+-|.... ||+-  ...+++-+.++..++||++-.++  
T Consensus        33 ASEN~~S~aV~~A~gS~ltnK-----------------YAEGyPgkRy-YgGce~VD~vE~laierak~LFga~~anV--   92 (413)
T COG0112          33 ASENFTSPAVMEAQGSDLTNK-----------------YAEGYPGKRY-YGGCEYVDEVEELAIERAKKLFGAEYANV--   92 (413)
T ss_pred             eccccCCHHHHHHHhhhhhhc-----------------cccCCCCccc-cCCCeeHHHHHHHHHHHHHHHhCCCcccc--
Confidence            444567999999976654421                 1224444443 3432  47788889999999999974444  


Q ss_pred             eccCc--hHHHHHHHHHHcC--------------------------CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          193 DYESE--AVEAMIRTSEKRG--------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       193 ~~es~--sV~~~~~~a~~~G--------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ...|.  +-..+..+.-+.|                          +++..-+++..++.||.+++++++...     ++
T Consensus        93 QPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~-----kP  167 (413)
T COG0112          93 QPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEV-----KP  167 (413)
T ss_pred             CCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHh-----CC
Confidence            11111  1111111111122                          344455666567899999999998753     45


Q ss_pred             eEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                      +|+++-.-.  -=..+|++.++ +|.+.|+++++|++..+|-     ...||.    .+|+++.|-||-|.+ |.| |++
T Consensus       168 K~ii~G~Sa--Y~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~----~AdvVTtTTHKTlrG-PrG-G~I  239 (413)
T COG0112         168 KLIIAGGSA--YSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP----HADVVTTTTHKTLRG-PRG-GII  239 (413)
T ss_pred             CEEEECccc--cccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC----ccceEeCCcccCCCC-CCc-eEE
Confidence            666554321  12367787775 7899999999999765432     112443    289999999997655 874 555


Q ss_pred             EEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          319 FVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       319 ~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      +.++ ++...+....|.|.+                                  |-|...-|+|.+              
T Consensus       240 l~~~eel~kkin~aVFPg~q----------------------------------ggpl~HviAaka--------------  271 (413)
T COG0112         240 LTNDEELAKKINSAVFPGLQ----------------------------------GGPLMHVIAAKA--------------  271 (413)
T ss_pred             EeccHHHHHHhhhhcCCccC----------------------------------CChHHHHHHHHH--------------
Confidence            5554 555556544443331                                  122233344443              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                -|+....+-++..-.+++..-+..|.+.|.+.      |   ++|.+-   ...
T Consensus       272 --------------------------Va~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~------G---~~vvsG---gTd  313 (413)
T COG0112         272 --------------------------VAFKEALEPEFKEYAKQVVKNAKALAEALKER------G---FKVVSG---GTD  313 (413)
T ss_pred             --------------------------HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc------C---CeEecC---Ccc
Confidence                                      24443334466666666666677777777764      4   344432   223


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      ...|...+.+. |  +.-..+.+++++.||.+---.   .+ .|+.                          ...-.+.|
T Consensus       314 nHl~lVDl~~~-~--~~Gk~ae~~L~~~~It~NKN~---iP-~D~~--------------------------~p~~tSGI  360 (413)
T COG0112         314 NHLVLVDLRSK-G--LTGKKAEAALERAGITVNKNA---IP-FDPE--------------------------SPFVTSGI  360 (413)
T ss_pred             ceEEEEEcccC-C--CCHHHHHHHHHHcCEeeccCC---CC-CCCC--------------------------CCCCCccc
Confidence            55777777622 1  333468889999999763110   00 0000                          01112457


Q ss_pred             EEecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454          558 TASLGYLAN----FEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       558 R~Slg~~tt----~eDVd~l~~~l~~~l~~  583 (603)
                      |+..--.||    ++|...+.++|.+.|+.
T Consensus       361 RiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~  390 (413)
T COG0112         361 RIGTPAVTTRGFGEAEMEEIADLIADVLDG  390 (413)
T ss_pred             eeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence            776665553    67888888888887765

>PRK05839 hypothetical protein; Provisional

Probab=98.42  E-value=2.6e-05  Score=84.19  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=68.6

Q ss_pred             HHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|++|..++.+.. ...++..+.  .+       ++++++.++.-+|.||..+|.+.+    +.|+++|+++++|-
T Consensus       125 ~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~-------~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE  195 (374)
T PRK05839        125 AAIASRAKVLLMPLTKENDFTPSLNEK--EL-------QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDE  195 (374)
T ss_pred             HHHhcCCEEEEeecccccCCcCCcchh--hh-------ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEecc
Confidence            34556888888877521 223333222  22       147898888889999999998743    35789999999997


Q ss_pred             cc--cCCC-CCCC-CCC------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          280 CA--LGPK-DMDS-FGL------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       280 aq--~~~~-~m~~-ldl------s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      +-  +... ...+ +++      ....-=+++.|+=|.||.+---+|.++..+++++
T Consensus       196 ~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~  252 (374)
T PRK05839        196 CYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILK  252 (374)
T ss_pred             chhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHH
Confidence            52  1110 0001 111      1111227789999998853223788887655443

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=98.41  E-value=2.9e-05  Score=84.62  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=77.7

Q ss_pred             HHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          206 SEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .+-.|+++..++++..  +..++.++|++.+..      +|+++++..=+|.||.+++-+.+    +.|+++|++++.|-
T Consensus       130 ~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~------ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DE  203 (393)
T COG0436         130 VKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP------KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDE  203 (393)
T ss_pred             HHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc------cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeh
Confidence            3446899999986432  568899999999974      69999999999999999997643    46899999999997


Q ss_pred             c--ccC--CC-CCCCCCCCCC-CCcEEEEcccccCCCCCCc--eEEEEEe-CCC
Q 007454          280 C--ALG--PK-DMDSFGLSLV-RPDFLICSFYQIFGENPSG--FGCLFVK-KST  324 (603)
Q Consensus       280 a--q~~--~~-~m~~ldls~~-~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~  324 (603)
                      +  .+.  +. ....+.+... ..=+.+-|+=|.|+  -+|  +|.++.. +.+
T Consensus       204 iY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~--mtGwRvG~~v~~~~~l  255 (393)
T COG0436         204 IYEELVYDGAEHPSILELAGARDRTITINSFSKTYG--MTGWRIGWVVGPPEEL  255 (393)
T ss_pred             hhhhcccCCCCcCCHhhcCCCcceEEEEeccccccc--ccccceeEeecChHHH
Confidence            5  222  21 0011222211 12345559999998  446  8888877 444

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=98.41  E-value=3.3e-05  Score=84.16  Aligned_cols=82  Identities=17%  Similarity=0.069  Sum_probs=54.5

Q ss_pred             CeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEecccc--CCCCCCCCCCCCC----CCcEEEEcccccCCCCC
Q 007454          243 QRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACAL--GPKDMDSFGLSLV----RPDFLICSFYQIFGENP  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~--~~~~m~~ldls~~----~~Dflv~S~hK~fG~~P  312 (603)
                      +++++.++.-+|.||..+|.+    ++..|+++++++++|-+-.  ...+..+..+..+    ..-+++.|+=|.||.|-
T Consensus       173 ~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pG  252 (402)
T TIGR03542       173 KIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTG  252 (402)
T ss_pred             CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCC
Confidence            578888889999999999964    2346789999999998632  1110012222221    12356789999998532


Q ss_pred             CceEEEEEeCCC
Q 007454          313 SGFGCLFVKKST  324 (603)
Q Consensus       313 ~G~G~L~vkk~~  324 (603)
                      ..+|.+++.+..
T Consensus       253 lRiG~~i~~~~l  264 (402)
T TIGR03542       253 VRLGWTVVPKEL  264 (402)
T ss_pred             cceEEEEecHHH
Confidence            237888886654

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>PRK07036 hypothetical protein; Provisional

Probab=98.39  E-value=0.00046  Score=76.98  Aligned_cols=94  Identities=16%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCCCCC-CCCC---CCCC
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKDMDS-FGLS---LVRP  297 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~m~~-ldls---~~~~  297 (603)
                      +.+++.|...  ...+...|.+--+....|.+.|    ++.+. +|+++|+++++|=+|.+ |.. .. +..+   ...|
T Consensus       207 ~~~~~~i~~~--~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRt-G~~~~~~~~~gv~P  283 (466)
T PRK07036        207 DEFEDKILSL--GADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRL-GHFFASEAVFGIQP  283 (466)
T ss_pred             HHHHHHHHHc--CCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcC-chhhhhhhhcCCCC
Confidence            3455555421  1235655555555666798887    55554 79999999999987743 331 11 2222   3469


Q ss_pred             cEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454          298 DFLICSFYQIFGENPSG---FGCLFVKKSTVPILV  329 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~  329 (603)
                      |+++++  |-+|+   |   +|++++++++++.+.
T Consensus       284 Divt~g--K~l~g---G~~Pi~av~~~~~i~~~~~  313 (466)
T PRK07036        284 DIITFA--KGLTS---GYQPLGAVIISERLLDVIS  313 (466)
T ss_pred             CEEEEc--ccccc---CccccEEEEEcHHHHHHHh
Confidence            988774  75552   3   799999998876554

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.39  E-value=4.6e-05  Score=82.25  Aligned_cols=148  Identities=17%  Similarity=0.152  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcE--EEeccCch-----------------------------HHHHHHHHHHcCCEEEEEe
Q 007454          169 SGLESAMKKRIMDFLNISENDY--VYDYESEA-----------------------------VEAMIRTSEKRGARVMSAE  217 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~--vf~~es~s-----------------------------V~~~~~~a~~~Ga~V~~~~  217 (603)
                      ..+..++=.-++.+||++++++  .+.=.|++                             ...+-.+++..+.+++.++
T Consensus       119 ~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~  198 (491)
T KOG1383|consen  119 RKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVP  198 (491)
T ss_pred             HHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeee
Confidence            4566777788899999997754  11101111                             1122234445677888899


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh-CCcEEEEeccccC---C---CCCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE-NDWHILIDACALG---P---KDMDS  289 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e-~g~~vlvDAaq~~---~---~~m~~  289 (603)
                      ++..+-++|..++.+.+++      +|.+++..+-+-.+|..=|++.+ .++.+ .++.+|+|||.-+   |   ..+.+
T Consensus       199 ~~~~~~~~D~~k~~~~i~e------Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~  272 (491)
T KOG1383|consen  199 LDEGDYRVDPGKVVRMIDE------NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEE  272 (491)
T ss_pred             ccccceEecHHHHHHHhcc------ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccc
Confidence            8866778999999999975      89999999999999999999966 47777 9999999997321   1   12236


Q ss_pred             CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          290 FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       290 ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +|+..-++--+.+++||..-. |.|+|..+-|..
T Consensus       273 fdFr~p~V~Sisa~~HKYGl~-~~G~~~vl~r~k  305 (491)
T KOG1383|consen  273 FDFRVPGVTSISADGHKYGLA-PAGSSWVLYRNK  305 (491)
T ss_pred             cccCCCCceeEeeccceeeee-ecCcEEEEEccc
Confidence            777777888899999995333 999997666544

>PLN02231 alanine transaminase

Probab=98.38  E-value=0.0001  Score=83.40  Aligned_cols=108  Identities=14%  Similarity=0.122  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHc----C--CCCCcEEEeccCc-hHHHHH----------------------HHHHHcCCEEEEEeccCC-c
Q 007454          173 SAMKKRIMDFL----N--ISENDYVYDYESE-AVEAMI----------------------RTSEKRGARVMSAEFSWP-R  222 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~e~vf~~es~-sV~~~~----------------------~~a~~~Ga~V~~~~~~~~-~  222 (603)
                      ...|+.|++++    |  +++++++.+..+. ++..+.                      ..++..|++++.++++.. +
T Consensus       171 ~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~  250 (534)
T PLN02231        171 KGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATG  250 (534)
T ss_pred             HHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccC
Confidence            47888888877    3  5678887664332 222222                      223456788888877632 2


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecc
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDAC  280 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAa  280 (603)
                      ..++.++|++.+...+....+++++++.--+|.||.+++.+.+    ..|+++|++++.|-+
T Consensus       251 ~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEv  312 (534)
T PLN02231        251 WGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEV  312 (534)
T ss_pred             CCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence            3789999999987422222257887888779999999998743    457899999999975

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.37  E-value=5.3e-05  Score=81.60  Aligned_cols=289  Identities=15%  Similarity=0.126  Sum_probs=167.3

Q ss_pred             HHHHHHHHHHHcCCCCCcE----------EEeccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          172 ESAMKKRIMDFLNISENDY----------VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~----------vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      +=+||.+..+-++-.+.+|          +|.. .++...+-+.+.-.|.+.+.++.+. +-.+..+.|+++|..+..+.
T Consensus       156 llaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~S-Dqahssveka~~i~~VklR~l~td~-n~~mr~~~L~~AIe~D~arG  233 (511)
T KOG0628|consen  156 LLAARTEKIEEIKSRPPELHESSVLARLVAYCS-DQAHSSVEKACLIAGVKLRALPTDE-NFGMRGDTLRKAIEEDIARG  233 (511)
T ss_pred             HHHHHHHHHHHhhcCCCcccchhhhhhheEEec-CcccchHHHhHhhcceeEEEeeccc-CcCCCHHHHHHHHHHHHhCC
Confidence            3467777777777665444          3421 1233334445555688999999884 77889999999998643221


Q ss_pred             CCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCC--------CCCcEEEEcccccCCCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSL--------VRPDFLICSFYQIFGENP  312 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~--------~~~Dflv~S~hK~fG~~P  312 (603)
                      --+-.++.+.-+--+=..=++..+. .|+++|+++|||||-++.-    +-..+        -.+|-+-+..|||+-- =
T Consensus       234 lIPf~v~at~GTT~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa----~iCpE~r~l~rGie~aDSfn~n~hK~~~v-n  308 (511)
T KOG0628|consen  234 LIPFFVCATLGTTSSCAFDELEELGPVCREEGLWLHVDAAYAGSA----FICPEFRYLMRGIEYADSFNFNPHKWLLV-N  308 (511)
T ss_pred             CccEEEEEeecCccccccccHHHhcchhhhcCEEEEeehhhcccc----ccCHHHHHHhhcchhhccccCChhheeEE-e
Confidence            1112223333222222344566664 8999999999999744321    11111        2479999999999753 2


Q ss_pred             CceEEEEEeCCCC--c--CcCCCCCCCce-eccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhc
Q 007454          313 SGFGCLFVKKSTV--P--ILVDNTSSGMV-SLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS  387 (603)
Q Consensus       313 ~G~G~L~vkk~~~--~--~L~p~~~gG~v-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~  387 (603)
                      .-.-+||+|+...  .  ...|.+.-+.. ...+.++. |.        +..    -++                     
T Consensus       309 fDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~Dyrh-wq--------ipl----~rR---------------------  354 (511)
T KOG0628|consen  309 FDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAPDYRH-WQ--------IPL----GRR---------------------  354 (511)
T ss_pred             eeeecceeecCceeeeeeecChHhhcchhhccCCCccc-cc--------ccc----ccc---------------------
Confidence            3466799998742  0  11222221100 00111110 10        000    011                     


Q ss_pred             CccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          388 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       388 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~---~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                +                         ++|+.   +...|.+++++|+|.-.+ |-+...+|-+    +.+
T Consensus       355 ----------f-------------------------RSLKlWfv~R~~Gve~lq~~iR~h~~-La~~fe~lv~----~d~  394 (511)
T KOG0628|consen  355 ----------F-------------------------RSLKLWFVLRSYGVENLQNYIREHVR-LAKEFETLVR----ADP  394 (511)
T ss_pred             ----------h-------------------------hhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHhh----cCC
Confidence                      0                         35553   344689999999886443 2222333322    234


Q ss_pred             eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      ..+|..|.    .-+.|.|.+++.+  .++..+++++.+...|++..-.+                              
T Consensus       395 ~FE~~~~~----~lgLvcFRlk~~N--~~ne~Ll~~in~~g~i~l~~~~l------------------------------  438 (511)
T KOG0628|consen  395 RFEIVNKR----ILGLVCFRLKGDN--EINEALLNRLNSSGRIHLVPASL------------------------------  438 (511)
T ss_pred             cceeeccc----ccceeEEeecCCc--HHHHHHHHHHHhcCcEEEEEeee------------------------------
Confidence            46776654    4679999999974  35667788887777887753211                              


Q ss_pred             ccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhh
Q 007454          545 NRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                             .+.-++|+..+ ..+|.+||+.-|+.|.+..+.-
T Consensus       439 -------~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l  472 (511)
T KOG0628|consen  439 -------HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADEL  472 (511)
T ss_pred             -------cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHH
Confidence                   11137887776 4689999999999999887763

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.33  E-value=9.1e-05  Score=81.96  Aligned_cols=206  Identities=11%  Similarity=0.149  Sum_probs=123.2

Q ss_pred             CeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC-CCCC--CCCCcEEEEcccccCCCCCC
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS-FGLS--LVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~-ldls--~~~~Dflv~S~hK~fG~~P~  313 (603)
                      +...|.+-.+....|.+.|    ++.+ ++|+++|+.+++|=++. .+.. .. +...  ...||++++|  |-+|. -.
T Consensus       221 ~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~-G~~~a~~~~gv~pDivt~~--K~l~~-G~  296 (441)
T PRK05769        221 EVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRT-GKMFAIEHFGVEPDIITLA--KAIAG-GL  296 (441)
T ss_pred             ceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc-cceehhhccCCCCCEEEEc--ccccC-Cc
Confidence            5677777666667899999    7755 47999999999998766 2221 11 1111  2468999876  86653 12


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      .+|+++.+++++..+ +...+++                                + .| .+...++++           
T Consensus       297 p~gav~~~~~i~~~~-~~~~~~T--------------------------------~-~g-~p~~~aaa~-----------  330 (441)
T PRK05769        297 PLGAVIGRAELMFLP-PGSHANT--------------------------------F-GG-NPVAAAAAL-----------  330 (441)
T ss_pred             ccEEEEEehhhhhcC-CCCCCCC--------------------------------C-Cc-CHHHHHHHH-----------
Confidence            389999998876322 1111110                                0 11 111111111           


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPK  472 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~  472 (603)
                                                    ++|+.+++    .+.++++.+.++|.++|.++...    .|++ .+-   
T Consensus       331 ------------------------------a~L~~l~~----~~~~~~~~~g~~l~~~L~~l~~~----~~~~~~vr---  369 (441)
T PRK05769        331 ------------------------------ATLEELEE----GLLENAQKLGEYLRKELKELKEK----YEFIGDVR---  369 (441)
T ss_pred             ------------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh----CCCeeeee---
Confidence                                          46776654    55678888889999998876410    1222 221   


Q ss_pred             CCCCCCCEEEEEEccCCCCc---cCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccC
Q 007454          473 IRFDRGPALAFNVFDWKREK---IEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK  549 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~---v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  549 (603)
                         .+|.++.+.+.+...+.   +.. .+.+.+-++||.+..                                      
T Consensus       370 ---g~G~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~Gil~~~--------------------------------------  407 (441)
T PRK05769        370 ---GLGLMIGVELVKDRKEPDPKLRD-KVLYEAFKRGLLLLG--------------------------------------  407 (441)
T ss_pred             ---cceEEEEEEeccCCccccHHHHH-HHHHHHHhCCcEEec--------------------------------------
Confidence               35667777774421111   111 222333356776531                                      


Q ss_pred             CCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          550 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       550 ~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                        .+..++|+++.+..|.+||+++++.+.+.+++
T Consensus       408 --~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~  439 (441)
T PRK05769        408 --AGKSAIRIIPPLIITEEEADIGLEILEEAIKE  439 (441)
T ss_pred             --CCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence              11248999999999999999999999988754

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.32  E-value=0.00027  Score=77.96  Aligned_cols=226  Identities=9%  Similarity=0.047  Sum_probs=128.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++++.... ...++..|.+--+....|.+.|    ++.+ ++|+++|+++++|=++.+ +..  +....--...|
T Consensus       191 ~~~~l~~~~~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~p  269 (433)
T PRK08117        191 CLRDLESLFKHQV-TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVP  269 (433)
T ss_pred             HHHHHHHHHHhcc-CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCC
Confidence            3455666664210 1134666666556667899988    7755 589999999999987653 111  00011112357


Q ss_pred             cEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |++  ++=|.+|.   |  +|++..++++++.+.....+++                                + .  .|
T Consensus       270 Di~--t~sK~lg~---G~pigav~~~~~i~~~~~~~~~~~T--------------------------------~-~--~n  309 (433)
T PRK08117        270 DIM--TIAKGIAS---GLPLSAVVASKELMEQWPLGSHGTT--------------------------------F-G--GN  309 (433)
T ss_pred             CEe--ehhhhccC---CCcceeEEEcHHHHhhccCCCCCCC--------------------------------C-C--cC
Confidence            874  66798772   4  7888888877654432111110                                0 0  11


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ..+.++..                                        ++|+.++.   +.+.++++.+.++|.++|.++
T Consensus       310 p~~~aaa~----------------------------------------a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l  346 (433)
T PRK08117        310 PVACAAAL----------------------------------------ATLEVIKE---EKLLDNANEMGAYALERLEVL  346 (433)
T ss_pred             HHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            11111111                                        46665543   345677888888888888876


Q ss_pred             CCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc--cCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          456 QHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK--IEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       456 ~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~--v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      ...    .+.+ .+      ..+|-++.+.+.+.+++.  .....+.+.+.++||.+...                    
T Consensus       347 ~~~----~~~~~~v------rg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~--------------------  396 (433)
T PRK08117        347 KEK----HPVIGDV------RGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLC--------------------  396 (433)
T ss_pred             Hhc----CCceeee------ecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeec--------------------
Confidence            310    1211 11      124556666665433211  01122334444578766421                    


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                       + ....++|+++.+..|.+||+++++.|.+.++.
T Consensus       397 -----------------g-~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~  429 (433)
T PRK08117        397 -----------------G-NAGNVLRMIPPLTVTKEEIDEGLDILDEALTE  429 (433)
T ss_pred             -----------------C-CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence                             0 01258999999999999999999999988754

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=98.30  E-value=0.00018  Score=80.10  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=88.7

Q ss_pred             cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHh
Q 007454          195 ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQE  270 (603)
Q Consensus       195 es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e  270 (603)
                      |..+-..++..++..|+++.-+|.+  ..-++.++|++.+...    +-..+++.|..+|.||..+|.+    .+++|++
T Consensus       185 E~PtY~~~~~~~~~~g~~~~~vp~d--~~G~~~e~le~~~~~~----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~  258 (459)
T COG1167         185 EDPTYPGALQALEALGARVIPVPVD--EDGIDPEALEEALAQW----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEK  258 (459)
T ss_pred             cCCCcHHHHHHHHHcCCcEEecCCC--CCCCCHHHHHHHHhhc----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHH
Confidence            4445556677788899999999998  3457899999998752    2457999999999999999996    3457899


Q ss_pred             CCcEEEEecc----ccCCCCCCC---CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          271 NDWHILIDAC----ALGPKDMDS---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       271 ~g~~vlvDAa----q~~~~~m~~---ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      ++++++=|-.    .+-+.  -+   ..+...+==+++.||=|++. |-..+|.+.+.+++++.+
T Consensus       259 ~~~~IIEDD~y~el~~~~~--p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~  320 (459)
T COG1167         259 YDVLIIEDDYYGELRYDGP--PPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKL  320 (459)
T ss_pred             cCCeEEeeCcchhhhcCCC--CCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCCHHHHHHH
Confidence            9999999874    11121  11   11222233489999999988 334577787776654433

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=98.30  E-value=0.00015  Score=77.32  Aligned_cols=135  Identities=13%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHcCCCC-CcEEEeccCc-hHHHHH-------------------HHHHHcCCEEEEEeccCCccccCHHHHH
Q 007454          173 SAMKKRIMDFLNISE-NDYVYDYESE-AVEAMI-------------------RTSEKRGARVMSAEFSWPRLRINSEKLR  231 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~-~e~vf~~es~-sV~~~~-------------------~~a~~~Ga~V~~~~~~~~~g~i~~~~L~  231 (603)
                      .+.|+.|++++|+++ ++++.+..+. ++..+.                   ..++..|+++..++.+.           
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~~~~~g~v~v~~P~y~~y~~~~~~~g~~~~~v~~~~-----------  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPALLPRGRVGIAPLAYSEYAPAFARHGHRVVPLDEAA-----------  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHHhcCCCeEEEcCCCcHHHHHHHHHCCCEEEeecccc-----------
Confidence            578999999999974 7887765543 222221                   12233444444433321           


Q ss_pred             HHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-H---HHhCCcEEEEecc--ccCCCCCCCC-CCCCCCCcEEEEcc
Q 007454          232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-I---AQENDWHILIDAC--ALGPKDMDSF-GLSLVRPDFLICSF  304 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~---a~e~g~~vlvDAa--q~~~~~m~~l-dls~~~~Dflv~S~  304 (603)
                      ..+.      ..++++.+..-+|.||..++.+.+. +   +.+++.++++|=+  .+.+.  .++ .+....-=+++-||
T Consensus       125 ~~~~------~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~--~s~~~~~~~~~vi~l~Sf  196 (339)
T PRK06959        125 DTLP------AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA--ASLAAHTDRPGLVVLRSV  196 (339)
T ss_pred             hhcc------ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc--ccchhccCCCCEEEEecC
Confidence            1111      1244566666689999999997553 3   4567888888975  22221  111 11111112778899


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      =|.||.  .|  +|.++..+++++.+
T Consensus       197 SK~~gl--~GlRiGy~v~~~~li~~l  220 (339)
T PRK06959        197 GKFFGL--AGVRAGFVLAAPALLAAL  220 (339)
T ss_pred             hhhcCC--cchheEEEecCHHHHHHH
Confidence            999994  36  79888876655444

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.29  E-value=0.00091  Score=73.53  Aligned_cols=227  Identities=15%  Similarity=0.153  Sum_probs=129.9

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH-HHHH----HHHhCCcEEEEeccccC----CCCCCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY-LWMR----IAQENDWHILIDACALG----PKDMDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl-~~i~----~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~~  297 (603)
                      .+.+++.|........+..-|.+=-+..+.|.+.|= .|++    +|+++|+.+++|=+|.+    |+ |-.+.-....|
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv~P  284 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGVEP  284 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCCCC
Confidence            334555554322222345444444455578886664 4764    57899999999998876    32 22222223369


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |.+++|  |-+|. -.=+|+++.|++.+. ..|...+|+          |                       .| .++.
T Consensus       285 Divt~a--K~ig~-G~Pl~avv~r~ei~~-~~~g~~~~T----------f-----------------------~G-Npva  326 (447)
T COG0160         285 DIVTLA--KSLGG-GLPLSAVVGRAEIMD-WPPGGHGGT----------F-----------------------GG-NPVA  326 (447)
T ss_pred             CEEEec--ccccC-CCceeEEeccHHhcc-cCCcccCCC----------C-----------------------Cc-CHHH
Confidence            999886  64431 112889999998875 433222222          0                       01 1222


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..+++                                         +.||.+.+   +.+.+|...+-++|.++|.+|..
T Consensus       327 ~Aaa~-----------------------------------------AvL~vie~---e~L~~~a~~~G~~l~~~L~~l~~  362 (447)
T COG0160         327 CAAAL-----------------------------------------AVLDVIEE---ENLLERAAELGEYLRDRLEELQE  362 (447)
T ss_pred             HHHHH-----------------------------------------HHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHh
Confidence            22222                                         35554443   46777888999999999988753


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc-cCHHH---HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPVL---VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~-v~~~~---V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      .    .|.|   |.-  .-+|-.+..-+-+..... -++++   |...+-++|+.+-+                      
T Consensus       363 ~----~~~I---gdV--RG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~----------------------  411 (447)
T COG0160         363 K----HPLI---GDV--RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLT----------------------  411 (447)
T ss_pred             h----cCce---ecc--cccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEec----------------------
Confidence            1    2322   321  134556666555422111 12222   33333445654321                      


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                         |+             ....+||+..-.--|.|++|..++.|.+.|.+
T Consensus       412 ---~G-------------~~~nviRi~PPL~is~e~~d~~l~il~~al~~  445 (447)
T COG0160         412 ---CG-------------PHGNVLRILPPLTISDEELDEGLDILEEALKE  445 (447)
T ss_pred             ---cC-------------CCCcEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence               11             11359999999999999999999999987754

>PRK06855 aminotransferase; Validated

Probab=98.27  E-value=0.00028  Score=77.82  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=88.1

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccCc-hHHHHHH-------------------H--HHHcCCEEEEEeccC-Cccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYESE-AVEAMIR-------------------T--SEKRGARVMSAEFSW-PRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es~-sV~~~~~-------------------~--a~~~Ga~V~~~~~~~-~~g~  224 (603)
                      +.|+.|++++      ++++++++.+...+ ++..+..                   .  ....|+++..++.+. .+..
T Consensus        77 ~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~  156 (433)
T PRK06855         77 ETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYGLLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWY  156 (433)
T ss_pred             HHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHHhcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCC
Confidence            6777777776      35677886654321 2111111                   1  123477777777652 2235


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--cC--CCCCCCC-CCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--LG--PKDMDSF-GLSLV  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~~--~~~m~~l-dls~~  295 (603)
                      ++.++|++.+...    ++++++.++.-+|.||.++|.+.+    +.|+++|++++.|-+-  +.  +..+.++ .+..-
T Consensus       157 ~d~~~l~~~~~~~----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~  232 (433)
T PRK06855        157 PDLDDLENKVKYN----PSIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGD  232 (433)
T ss_pred             CCHHHHHHHHhcC----CCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCc
Confidence            7899999988631    246777777789999999998743    3578999999999852  21  2110111 11111


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEe
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ..-+++.|+=|.|+.|---+|.+++.
T Consensus       233 ~~~I~~~S~SK~~~~pGlRiG~ii~p  258 (433)
T PRK06855        233 VPGIALKGISKELPWPGSRCGWIEVY  258 (433)
T ss_pred             CCeEEEecCccccCCCcceEEEEEEe
Confidence            12378899999998531227887763

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.25  E-value=0.00011  Score=82.77  Aligned_cols=228  Identities=13%  Similarity=0.171  Sum_probs=132.1

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Df  299 (603)
                      ++|+++|....  .++...|.+--+....|.+.|    ++.+ ++|+++|+++++|=+|. +|..  |--.+.....||+
T Consensus       247 ~~le~~l~~~~--~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDi  324 (504)
T PLN02760        247 DNLENLILKEG--PETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDL  324 (504)
T ss_pred             HHHHHHHHhcC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcE
Confidence            45777765211  124555555444456799888    7766 48999999999998773 3321  1111222345997


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      +++  =|-+|+.-.-+|++++++++++.+.+.... |..                               .-.+|-+- .
T Consensus       325 vtl--gK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~-------------------------------~h~~T~~g-n  370 (504)
T PLN02760        325 VSL--AKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSF-------------------------------AHGFTYSG-H  370 (504)
T ss_pred             EEe--cccccCCccccceEeecHHHHhhhhcccccccCc-------------------------------ccCCCCCC-C
Confidence            666  476652000188999998887666431100 100                               00112111 1


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      +++++            +++                         +.|+.+++   +.+.++++.+.++|.++|.++.. 
T Consensus       371 Pl~~A------------aal-------------------------a~Le~i~~---~~l~~~~~~~g~~l~~~L~~l~~-  409 (504)
T PLN02760        371 PVSCA------------VAL-------------------------EALKIYKE---RNIPEHVNKIAPRFQDGIKAFSG-  409 (504)
T ss_pred             HHHHH------------HHH-------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHhc-
Confidence            22222            011                         46776654   35677889999999999988731 


Q ss_pred             CCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          459 NTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       459 ~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                          .|.| .|-      .+|-++.+.+.+..+  +...     ...+.+.+.++||.++..                  
T Consensus       410 ----~~~v~~vr------G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~------------------  461 (504)
T PLN02760        410 ----SPIIGEIR------GTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA------------------  461 (504)
T ss_pred             ----CCCeeeEE------eCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec------------------
Confidence                2222 222      256788887755322  1111     112333334567665421                  


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                            + .++|+++.+-.|.+|||++++.+.+.|..
T Consensus       462 ----------------------g-~~lrl~Ppl~it~eeid~~~~~l~~al~~  491 (504)
T PLN02760        462 ----------------------G-DNIMMSPPLIITPEEVDELISIYGKALKA  491 (504)
T ss_pred             ----------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                  1 37899999999999999999999998875

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=98.23  E-value=0.00012  Score=81.05  Aligned_cols=209  Identities=11%  Similarity=0.114  Sum_probs=122.6

Q ss_pred             CeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                      ++..|.+--+....|.+.|    ++.+ ++|+++|+.+++|=+|.+ +..  |--...-...||.++++  |-+|.   |
T Consensus       219 ~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~g--K~l~~---G  293 (443)
T PRK06058        219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTA--KGIAG---G  293 (443)
T ss_pred             ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEc--ccccC---C
Confidence            4555555545555687765    4444 378999999999987653 210  11112223569999997  97652   4


Q ss_pred             --eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh-hhhhhhhhcCccc
Q 007454          315 --FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG-PMSIEMRQSGKLE  391 (603)
Q Consensus       315 --~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g-i~gl~~~~~~~~~  391 (603)
                        +|+++.++++++.+.+...+++          +                        + .|..+ .+++         
T Consensus       294 ~Pi~av~~~~~i~~~~~~~~~~~T----------~------------------------~-gnpl~~aaa~---------  329 (443)
T PRK06058        294 LPLSAVTGRAEIMDAPHPGGLGGT----------Y------------------------G-GNPVACAAAL---------  329 (443)
T ss_pred             CccEEEEEcHHHHhhccCCCCCCC----------C------------------------C-CCHHHHHHHH---------
Confidence              8999999888765543211111          0                        0 11111 1111         


Q ss_pred             cchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeC
Q 007454          392 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYG  470 (603)
Q Consensus       392 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iyg  470 (603)
                                                      +.|+.+.+   +.+.++++.+.++|.++|.++...    .++| .|- 
T Consensus       330 --------------------------------a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~----~~~i~~vr-  369 (443)
T PRK06058        330 --------------------------------AAIETIEE---DDLVARARQIEALMTDRLRALAAE----DDRIGDVR-  369 (443)
T ss_pred             --------------------------------HHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHhh----CCcEEeee-
Confidence                                            46666544   356677888888899988876311    1222 222 


Q ss_pred             CCCCCCCCCEEEEEEccCCCCccCHHH---HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccc
Q 007454          471 PKIRFDRGPALAFNVFDWKREKIEPVL---VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK  547 (603)
Q Consensus       471 p~~~~~rg~ivsFnv~~~~g~~v~~~~---V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  547 (603)
                           .+|.++.+.+.+.....-+...   +.+.+-++||.++.+                                   
T Consensus       370 -----g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~-----------------------------------  409 (443)
T PRK06058        370 -----GRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTC-----------------------------------  409 (443)
T ss_pred             -----ccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEecc-----------------------------------
Confidence                 3577777777442110001112   222233567776532                                   


Q ss_pred             cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          548 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       548 ~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                        +.. ..+||+.+.+-.|.+||+++++.|.+++.+
T Consensus       410 --~~~-~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~  442 (443)
T PRK06058        410 --GTY-GNVIRLLPPLVIGDELLREGLDVLEAALAD  442 (443)
T ss_pred             --CCC-CCEEEEECCCccCHHHHHHHHHHHHHHHHh
Confidence              001 148999999999999999999999988753

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.21  E-value=0.00093  Score=71.81  Aligned_cols=258  Identities=16%  Similarity=0.138  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHH-HHHHHHhCCcEEE
Q 007454          199 VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYL-WMRIAQENDWHIL  276 (603)
Q Consensus       199 V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~-~i~~a~e~g~~vl  276 (603)
                      +.-+...++-.|.+|...+.+      +.++|++. ..     ..+--+.+..- |..| ...++. .+..+|++|++|+
T Consensus       178 ~~Vl~Tra~~~g~~i~~~~~~------d~~~l~~~-~~-----~~~~gv~vQyP-~~~G~~~~d~~~l~~~~h~~~al~~  244 (450)
T COG0403         178 LDVLRTRAEGLGIEIEVVDAD------DLDDLESA-DD-----GDVFGVLVQYP-NTFGIVEEDLRALIEAAHSAGALVI  244 (450)
T ss_pred             HHHHHhhcccCceEEEEeccc------hhhhhhhc-cc-----cCeEEEEEecC-CCCCccchhHHHHHHHHhhcCCEEE
Confidence            334455566667777766553      45666665 32     23433333333 4788 666698 4568999999887


Q ss_pred             Eec--cccCCCCCCCCCCCCCCCcEEEEccccc-----CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccc
Q 007454          277 IDA--CALGPKDMDSFGLSLVRPDFLICSFYQI-----FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT  349 (603)
Q Consensus       277 vDA--aq~~~~~m~~ldls~~~~Dflv~S~hK~-----fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~  349 (603)
                      |=+  -+++=-  -|  --+++.|.++.+...+     ||+ | ..|++-+|++....+.-..+| ...+....+-+-. 
T Consensus       245 v~aDplaL~LL--~p--PGe~GADIvvG~~QrfGvPmgfGG-P-hag~fA~~~~~~R~mPGRlVG-~S~D~~G~~A~rL-  316 (450)
T COG0403         245 VAADPLALGLL--KP--PGEFGADIVVGSAQRFGVPMGFGG-P-HAGYFAVKDEFKRQMPGRLVG-VSVDAAGKRAFRL-  316 (450)
T ss_pred             EEechhHhhcc--CC--ccccCCceEEecCcccCCCcCCCC-c-ceeeeeEhHhHhhcCCCceee-eeecCCCCchhhh-
Confidence            733  222211  01  1257999999999995     665 3 678899999876544333333 2111111000000 


Q ss_pred             cccCCCCCCcc-cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH-
Q 007454          350 DEFSSCETEPE-QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD-  427 (603)
Q Consensus       350 ~~~~~~~~e~~-~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald-  427 (603)
                            -+++. ++- |   .|--|.|+-..=+|             .++-                        +++- 
T Consensus       317 ------aLQTREQHI-R---ReKATSNICTnQaL-------------lA~~------------------------As~y~  349 (450)
T COG0403         317 ------ALQTREQHI-R---REKATSNICTNQAL-------------LALA------------------------ASMYA  349 (450)
T ss_pred             ------hHHHHHHHH-h---hhccchhhhHHHHH-------------HHHH------------------------HHHHH
Confidence                  00100 010 1   24456565533222             1111                        2221 


Q ss_pred             -HHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCC
Q 007454          428 -QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADREN  506 (603)
Q Consensus       428 -~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~g  506 (603)
                       ++=.-|+.+|..|+..++.+|..+|+++..    |   +++....    .--.+.+.+..   + + ...+.+.+...|
T Consensus       350 ~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~----g---~~~~~~~----fFdt~~v~~~~---~-~-~~~l~~~~~~~G  413 (450)
T COG0403         350 VYHGPQGLKEIAERIHRLAAYLAAGLKEIGA----G---VELVFDH----FFDTFTVRVPE---E-V-AEALLAAAIAGG  413 (450)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHhhcCC----c---eEecccc----ceeeEEEecch---h-H-HHHHHHHHHhcC
Confidence             222237999999999999999999997632    2   4554431    22355555542   1 1 122333333456


Q ss_pred             cEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          507 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       507 I~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      |-+|.=                                        ....+=+++-=.+|.+||+.||+.+...
T Consensus       414 ~~L~~~----------------------------------------~~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         414 INLRRV----------------------------------------DADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             Cceeee----------------------------------------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence            665421                                        1126778888899999999999988654

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.21  E-value=0.0012  Score=72.97  Aligned_cols=223  Identities=12%  Similarity=0.151  Sum_probs=127.7

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEE-eCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .++|++.|...   ..+...|.+ |..+...|.+.|    ++.+ ++|+++|+++++|=+|.+ |..  |-..+.....|
T Consensus       191 ~~~l~~~l~~~---~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~P  267 (428)
T PRK07986        191 IAPFARLMAAH---RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAP  267 (428)
T ss_pred             HHHHHHHHHhC---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCC
Confidence            45667777531   234555555 444666676543    3334 378999999999987753 221  11112233469


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |++++  =|-+|+.-.=+|++.+++++++.+.+.. .+..                               +..+|.+ .
T Consensus       268 Di~t~--gK~l~gG~~p~~av~~~~~i~~~~~~~~-~~~~-------------------------------~~~~T~~-g  312 (428)
T PRK07986        268 DILCL--GKALTGGTMTLSATLTTREVAETISNGE-AGCF-------------------------------MHGPTFM-G  312 (428)
T ss_pred             CEEEe--chhhhCCcccCcchhchHHHHHHhhcCC-CCcc-------------------------------ccCCCCC-c
Confidence            98864  5754420001477777777765554210 0000                               0112221 1


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++++            ++                         +.|+.+++-   .+.++++.+.++|.+.|.++..
T Consensus       313 ~p~~~aa------------a~-------------------------a~L~~i~~~---~~~~~~~~~g~~l~~~l~~l~~  352 (428)
T PRK07986        313 NPLACAV------------AN-------------------------ASLSLLESG---DWQQQVAAIEAQLREELAPLRD  352 (428)
T ss_pred             CHHHHHH------------HH-------------------------HHHHHHHhC---CHHHHHHHHHHHHHHHHHHHhc
Confidence            1222220            11                         467766543   4477888888899888887731


Q ss_pred             CCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          458 PNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       458 ~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                           .|.| .|-      -+|.++++.+.+..    ....+...+-++||.++..                        
T Consensus       353 -----~~~i~~vR------g~Gl~~~ve~~~~~----~~~~~~~~l~~~Gl~~~~~------------------------  393 (428)
T PRK07986        353 -----APMVADVR------VLGAIGVVETTRPV----NMAALQRFFVEQGVWIRPF------------------------  393 (428)
T ss_pred             -----CCCEEeEe------ccceEEEEEeCCcc----cHHHHHHHHHHCCcEEEec------------------------
Confidence                 1223 122      35778888886531    1223444445678776421                        


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      + .+||+.+.+-.|.+||+++++.|.+.|+.
T Consensus       394 ----------------g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        394 ----------------G-KLIYLMPPYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             ----------------C-CEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                            1 38999999999999999999999988755

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.21  E-value=5.6e-06  Score=88.52  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccc--ccHH-HHHHHHhCCcEEEEeccc
Q 007454          205 TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR--YPYL-WMRIAQENDWHILIDACA  281 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~--~pl~-~i~~a~e~g~~vlvDAaq  281 (603)
                      ..+..|+++..+.   ...+-+..+++..|..      +|.+.-..+.+|. |..  .|.+ .+.+||++|+.|++|+++
T Consensus       127 ~~~~aG~~l~EvG---~tn~t~~~d~~~AIne------~ta~llkV~s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aS  196 (395)
T COG1921         127 IIRLAGAKLVEVG---TTNRTHLKDYELAINE------NTALLLKVHSSNY-GFTGMLSEEELVEIAHEKGLPVIVDLAS  196 (395)
T ss_pred             HHHHcCCEEEEec---ccCcCCHHHHHHHhcc------CCeeEEEEeeccc-cccccccHHHHHHHHHHcCCCEEEecCC
Confidence            3445588877665   3456788999999985      5776666666664 443  4555 557999999999999987


Q ss_pred             cCCCCCCCCCCC---CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCC
Q 007454          282 LGPKDMDSFGLS---LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN  331 (603)
Q Consensus       282 ~~~~~m~~ldls---~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~  331 (603)
                      -..-+ ..-++.   +.++|.+++|++|+||+ |+ -|++..||++++.++..
T Consensus       197 g~~v~-~e~~l~~~la~GaDLV~~SgdKllgG-Pq-aGii~GkKelI~~lq~~  246 (395)
T COG1921         197 GALVD-KEPDLREALALGADLVSFSGDKLLGG-PQ-AGIIVGKKELIEKLQSH  246 (395)
T ss_pred             ccccc-cccchhHHHhcCCCEEEEecchhcCC-Cc-cceEechHHHHHHHHhh
Confidence            55432 133444   46899999999999998 87 89999999998877754

>PRK07482 hypothetical protein; Provisional

Probab=98.21  E-value=0.0015  Score=72.79  Aligned_cols=232  Identities=12%  Similarity=0.115  Sum_probs=125.3

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH-HHH----HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY-LWM----RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl-~~i----~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .+.|++.|...  ..+++.-|.+--+....|.+.|- ..+    ++|+++|+++++|=+|.+ |..  |--...-...||
T Consensus       206 ~~~l~~~~~~~--~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PD  283 (461)
T PRK07482        206 ADELEELILAE--GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPD  283 (461)
T ss_pred             HHHHHHHHHhc--CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCC
Confidence            45677777421  11244444443344556877553 333    368999999999987664 221  111222234699


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCC-CCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      +++++  |.+|+.-.-+|++++++++++.+....- .|.+                               .-.+|.+ .
T Consensus       284 iv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~-------------------------------~h~~T~~-g  329 (461)
T PRK07482        284 LITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAI-------------------------------GHGWTYS-G  329 (461)
T ss_pred             EEEEc--cccccCccccceeeecHHHHHHHhcccccCCcc-------------------------------ccCCCCC-c
Confidence            99974  7654200016888888877544432100 0100                               0012211 1


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++++            ++                         +.|+.+++   +.+.++++.+.++|.++|.++..
T Consensus       330 npl~~Aa------------a~-------------------------a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~  369 (461)
T PRK07482        330 HPICAAA------------AL-------------------------ANLDILER---ENLVGNAAEVGAYFRARLRAAFG  369 (461)
T ss_pred             CHHHHHH------------HH-------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHh
Confidence            1222220            11                         46666654   34566778888888888876531


Q ss_pred             CCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccCH-----HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          458 PNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIEP-----VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       458 ~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~~-----~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      .    .|.| .|-      .+|.++.+.+.+...  +..++     ..+...+-++||.++.+                 
T Consensus       370 ~----~~~v~~vr------G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-----------------  422 (461)
T PRK07482        370 D----HPLVGEVR------GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAM-----------------  422 (461)
T ss_pred             c----CCCEEEEe------eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecC-----------------
Confidence            1    1222 222      356777777753211  11111     12333334567665421                 


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                          .  ...+||+.+.+-.|.+||+++++.+.+.|+.
T Consensus       423 --------------------~--~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~  454 (461)
T PRK07482        423 --------------------P--HGDILGFAPPLVLTRAEADEIVAIAKDAVDE  454 (461)
T ss_pred             --------------------C--CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                                0  0148999999999999999999999998865

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.21  E-value=0.0012  Score=73.27  Aligned_cols=228  Identities=19%  Similarity=0.237  Sum_probs=127.7

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEE-eCcccccccccc-HHHH---H-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP-YLWM---R-IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~p-l~~i---~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .++|++.|...   ..+..-|.+ |.+....|.+.| -.++   . +|+++|+.+++|=+|.+ |..  |--.+.-...|
T Consensus       208 ~~~l~~~l~~~---~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~P  284 (453)
T PRK06943        208 LADVRRLFAER---AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWP  284 (453)
T ss_pred             HHHHHHHHHhC---CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCC
Confidence            36677777531   124544444 533555787665 3333   3 68999999999987653 221  11112223469


Q ss_pred             cEEEEcccccCC-CC-CCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFG-EN-PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG-~~-P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |+++++  |-+| +. |  +|++++++++++.+.+....+.                             +  +-.+|..
T Consensus       285 Divt~g--Kgl~gG~~P--i~av~~~~ei~~~~~~~~~~~~-----------------------------~--~~~~T~~  329 (453)
T PRK06943        285 DFLCLS--KGISGGYLP--LSLVLSRDAIFAAFYDDDVTRG-----------------------------F--LHSHSYT  329 (453)
T ss_pred             CeEeee--hhhccCccc--ceEEEEcHHHHHhhcccCccCC-----------------------------c--cCCCCCC
Confidence            999984  6443 21 3  8999999988755542100000                             0  0012210


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                       ..+++++            +++                         +.|+.+++-   .+-++++.+.++|.++|.+|
T Consensus       330 -gnpl~~a------------aa~-------------------------a~L~~i~~~---~l~~~~~~~G~~l~~~L~~l  368 (453)
T PRK06943        330 -GNPLACR------------AAL-------------------------ATLDLFAED---DVLARNARKSARLRAALAPL  368 (453)
T ss_pred             -CCHHHHH------------HHH-------------------------HHHHHHHhc---CHHHHHHHHHHHHHHHHHHH
Confidence             0122222            011                         467776653   35567777888888888776


Q ss_pred             CCCCCCCCceEE-EeCCCCCCCCCCEEEEEEc-cCCC-CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          456 QHPNTEGNALVK-IYGPKIRFDRGPALAFNVF-DWKR-EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       456 ~h~~~~g~plv~-Iygp~~~~~rg~ivsFnv~-~~~g-~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      ..     .|.|. |      ..+|-++.+.+. +.+. ..+ ...+.+.+-++||.++.                     
T Consensus       369 ~~-----~~~v~~v------rG~Gl~~gvel~~~~~~~~~~-~~~i~~~~~~~Gll~~~---------------------  415 (453)
T PRK06943        369 AA-----HPQVRHL------RQRGTIFAFDVALDGDAARTF-SRRFFEAALERELLLRP---------------------  415 (453)
T ss_pred             hc-----CCCEEeE------eccccEEEEEEccCCCcchHH-HHHHHHHHHHCCcEEEe---------------------
Confidence            31     12231 2      235778888885 2110 001 11233333456666531                     


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFV  586 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~  586 (603)
                                         .+ .++|+++-+-.|.+||+++++.|.+.|++-+.
T Consensus       416 -------------------~g-~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  449 (453)
T PRK06943        416 -------------------IG-TTVYLMPPYVLDDDEIAWLAERTRATLDATLA  449 (453)
T ss_pred             -------------------cC-CEEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence                               01 37999999999999999999999999987543

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.21  E-value=0.0014  Score=72.09  Aligned_cols=226  Identities=14%  Similarity=0.143  Sum_probs=126.1

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccc-cccHH---HH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYPYL---WM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~pl~---~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .+.+++.+... ....+...|.+--+....|. ..|-+   .+ ++|+++|+++++|=++.+ +..  |.....-...||
T Consensus       183 ~~~l~~~~~~~-~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pD  261 (421)
T PRK06777        183 LSSVERLFKAD-IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPD  261 (421)
T ss_pred             HHHHHHHHHhc-cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCC
Confidence            45677777521 01124555555555667786 46643   33 368999999999987652 221  111121233599


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      .++  +=|.+|. ---+|+++.++++++.+.+...+++          +                       .| .++..
T Consensus       262 iv~--~sK~l~~-G~pigav~~~~~i~~~~~~~~~~~T----------~-----------------------~~-~p~~~  304 (421)
T PRK06777        262 LIT--MAKSLGG-GMPISAVVGRAEVMDAPAPGGLGGT----------Y-----------------------AG-NPLAV  304 (421)
T ss_pred             EEe--eehhhcC-CCceEEEEEcHHHHhccCCCCCCCC----------C-----------------------Cc-CHHHH
Confidence            764  6687761 0117999998877655543211111          0                       01 11111


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      .+++                                         ++|+.+++   +.+.++.+.+.++|.++|.++...
T Consensus       305 aaa~-----------------------------------------a~L~~~~~---~~l~~~~~~~g~~l~~~L~~l~~~  340 (421)
T PRK06777        305 AAAL-----------------------------------------AVLDVIAE---EKLCQRALILGAHLVEVLEKAKAS  340 (421)
T ss_pred             HHHH-----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111                                         46666554   456778888889999999876311


Q ss_pred             CCCCCceEEEeCCCCCCCCCCEEEEEEccCC-CCccCHHH---HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REKIEPVL---VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~-g~~v~~~~---V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                          .|.+.-.     ..+|.++.+.+.+.. +.. ..+.   +.+.+-++||.+..|.                     
T Consensus       341 ----~~~i~~v-----rg~G~~~~i~~~~~~~~~~-~~~~~~~l~~~~~~~Gv~i~~~~---------------------  389 (421)
T PRK06777        341 ----CPAIVDI-----RARGSMVAVEFNDPQTGKP-SPEFTRQYQRQALEEGLLLLSCG---------------------  389 (421)
T ss_pred             ----CCCeEEe-----cCceEEEEEEEecCccCCc-cHHHHHHHHHHHHhCCeEEeecC---------------------
Confidence                1222211     135667776554321 110 1111   2222345777765320                     


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                      .. ..+||+++.+.-|.++|+++++.|.++|.
T Consensus       390 ----------------~~-g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        390 ----------------VH-GNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             ----------------CC-CCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence                            01 14899999999999999999999998874

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.20  E-value=0.00061  Score=75.03  Aligned_cols=96  Identities=16%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCC--CCCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPK--DMDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~--~m~~ldls~~~~D  298 (603)
                      +.++|++.+...   ..++..|++-.+...+|.+.|    ++.+ ++|+++|+++++|=++.+-.  .+...+.-...||
T Consensus       183 d~~~l~~~i~~~---~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pD  259 (426)
T PRK00062        183 DLEAVEELFEEY---GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPD  259 (426)
T ss_pred             CHHHHHHHHHhC---CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcc
Confidence            577888877531   135666665544445899998    6645 58999999999998765321  0111111123588


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      +++  +-|-+|.   |  +|++..++++++.+.
T Consensus       260 i~~--~gK~l~~---G~p~ga~~~~~~i~~~~~  287 (426)
T PRK00062        260 LTT--LGKIIGG---GLPVGAFGGRREIMEQLA  287 (426)
T ss_pred             hHh--hhhHhhC---CCcceeeeEHHHHHHhhc
Confidence            654  4597762   3  788888877766554

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=98.16  E-value=0.00025  Score=77.35  Aligned_cols=85  Identities=16%  Similarity=0.083  Sum_probs=54.6

Q ss_pred             CCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--cCCCCCCCCCCCCCC----CcEEEEcccccCCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--LGPKDMDSFGLSLVR----PDFLICSFYQIFGEN  311 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~~~~~m~~ldls~~~----~Dflv~S~hK~fG~~  311 (603)
                      .+++++.++.-+|.||..++.+.+    +.|++++++++.|-+-  +......+..+..+.    .-+++.||=|.||.+
T Consensus       175 ~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p  254 (409)
T PRK07590        175 EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT  254 (409)
T ss_pred             cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence            367888888888999999998733    3578999999999752  221100111222221    125677999999853


Q ss_pred             CCceEEEEEeCCCCc
Q 007454          312 PSGFGCLFVKKSTVP  326 (603)
Q Consensus       312 P~G~G~L~vkk~~~~  326 (603)
                      -.-+|.++..+++++
T Consensus       255 GlRiG~~i~~~~li~  269 (409)
T PRK07590        255 GTRCAYTVVPKELKG  269 (409)
T ss_pred             CceeEEEEcCHHHhh
Confidence            122788887766543

>PRK07480 putative aminotransferase; Validated

Probab=98.12  E-value=0.003  Score=70.32  Aligned_cols=94  Identities=16%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Df  299 (603)
                      +.|++.+....  ..++..|.+--+....|.+.|    ++.+ ++|+++|+++++|=+|. .|..  |--.+.....||+
T Consensus       206 ~~l~~~~~~~~--~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDi  283 (456)
T PRK07480        206 RQLEAKILELG--ADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDL  283 (456)
T ss_pred             HHHHHHHHhcC--CCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCe
Confidence            45555553211  124544444334445788777    4544 37899999999998764 2321  1112222346998


Q ss_pred             EEEcccccCCCCCCc---eEEEEEeCCCCcCc
Q 007454          300 LICSFYQIFGENPSG---FGCLFVKKSTVPIL  328 (603)
Q Consensus       300 lv~S~hK~fG~~P~G---~G~L~vkk~~~~~L  328 (603)
                      +++  =|-+|+   |   +|++++++++++.+
T Consensus       284 v~~--gK~l~g---G~~Pi~av~~~~~i~~~~  310 (456)
T PRK07480        284 MTI--AKGLTS---GYIPMGAVGVGDRVAEVL  310 (456)
T ss_pred             eee--ehhhcc---CCccceEEEEcHHHHHHH
Confidence            877  475542   3   79999998876554

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.11  E-value=0.0019  Score=71.28  Aligned_cols=223  Identities=10%  Similarity=0.066  Sum_probs=128.5

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeC-ccccccccc-cHHHHH----HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARY-PYLWMR----IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~-~Sn~TG~~~-pl~~i~----~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+.|++.|...   ..+..-|.+-- .....|.+. |-.++.    +|+++|+++++|=+|.+ |..  |...+.....|
T Consensus       193 l~~l~~~i~~~---~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~P  269 (429)
T PRK06173        193 IEPLQDLLEQK---GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVP  269 (429)
T ss_pred             HHHHHHHHHhC---CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCC
Confidence            45566777531   12454444444 255668764 444443    58899999999987753 221  10111223469


Q ss_pred             cEEEEcccccCCC-CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          298 DFLICSFYQIFGE-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       298 Dflv~S~hK~fG~-~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      |+++  +=|-+|+ .. =+|++++++++++.+.+.. .+.                             +  .-.+|...
T Consensus       270 Div~--~gK~l~gG~~-p~~a~~~~~~i~~~~~~~~-~~~-----------------------------~--~~~~T~~g  314 (429)
T PRK06173        270 DIMC--IGKALTGGYL-TLSATITTEAIAQTICSGE-AKC-----------------------------F--MHGPTFMA  314 (429)
T ss_pred             CEEE--eehhhhCCcc-ccceEEecHHHHHHHhcCC-CCc-----------------------------c--ccCCCCCc
Confidence            9887  4675542 01 1578888887765443210 000                             0  00112110


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                       .+++++            +++                         ++|+.+++-   .+.++++.+.++|.++|.++.
T Consensus       315 -~p~~~a------------aa~-------------------------a~l~~i~~~---~~~~~~~~~g~~l~~~L~~~~  353 (429)
T PRK06173        315 -NPLACA------------IAA-------------------------ESIRLLLES---PWQQNIQRIEAQLKQELAPAA  353 (429)
T ss_pred             -CHHHHH------------HHH-------------------------HHHHHHHhC---CHHHHHHHHHHHHHHHHHHhh
Confidence             122222            011                         577777653   346778888899999888652


Q ss_pred             CCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                           +.|.| .+      ..+|.++++.+.+..    ....+.+.+.++||.++..                       
T Consensus       354 -----~~~~v~~v------Rg~Gl~~~iel~~~~----~~~~i~~~l~e~Gi~v~~~-----------------------  395 (429)
T PRK06173        354 -----EFDSVAEV------RVLGAIGVVEMKEPV----NMATLQPRFVEHGIWVRPF-----------------------  395 (429)
T ss_pred             -----cCCCeeee------eccceEEEEEeCCcc----cHHHHHHHHHHCCeEEEec-----------------------
Confidence                 12323 12      136889999886531    1234555555678877421                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                       + .+||+.+-+-.|.+||+++++.|.+.|+.-
T Consensus       396 -----------------g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        396 -----------------G-KLVYIMPPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             -----------------C-CEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence                             1 389999999999999999999999988753

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=98.11  E-value=0.00042  Score=76.79  Aligned_cols=223  Identities=12%  Similarity=0.105  Sum_probs=127.9

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Df  299 (603)
                      +.+++.|... ...+++..|.+.-..|.+|.+.|    ++.+ ++|+++|+++++|=++.+ +..  +.........||+
T Consensus       190 ~~~~~~l~~~-~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDi  268 (443)
T PRK08360        190 EYIKEKFEGE-VYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDI  268 (443)
T ss_pred             HHHHHHHHhc-cCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCE
Confidence            3455556421 01135666666557788999888    3444 478999999999987652 221  1111122356898


Q ss_pred             EEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          300 LICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       300 lv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      +++  =|-+|  + |  +|+++.++++++.+.....+.+                                  .+..+..
T Consensus       269 itl--sK~l~--~-G~pigav~~~~~i~~~~~~~~~~~T----------------------------------~~~~p~~  309 (443)
T PRK08360        269 ITL--GKPLG--G-GLPISATIGRAEIMDSLPPLAHAFT----------------------------------LSGNPVA  309 (443)
T ss_pred             EEe--ccccc--C-CceeEEEEEcHHHHhhhcCCCCCCC----------------------------------CCcCHHH
Confidence            765  79887  2 5  8999988877655542110000                                  0001111


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..+++                                         ++|+.+.+-   .+.++++.+.++|.+.|+++..
T Consensus       310 ~aaa~-----------------------------------------a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l~~  345 (443)
T PRK08360        310 SAAAL-----------------------------------------AVIEEIEEK---NLLKRAEKLGNYTKKRLEEMKK  345 (443)
T ss_pred             HHHHH-----------------------------------------HHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHH
Confidence            11111                                         466666542   4567888888888888877631


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCcc-CH---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-EP---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v-~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      .    .|++   +.-  ..+|-++.+.+.+...... +.   ..+...+-++||.++..                     
T Consensus       346 ~----~~~v---~~v--rg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~---------------------  395 (443)
T PRK08360        346 K----HELI---GDV--RGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF---------------------  395 (443)
T ss_pred             h----CCCe---eee--eccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec---------------------
Confidence            1    1222   110  1356677777643211100 11   12323334567765310                     


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                         ...++|+++.+..|.+||+++++.+.+.++.
T Consensus       396 -------------------~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~  426 (443)
T PRK08360        396 -------------------SGNVLRIQPPLTIEKEVLDEGLDILEEAIED  426 (443)
T ss_pred             -------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                               1248999999999999999999999998865

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.08  E-value=1.4e-06  Score=92.23  Aligned_cols=112  Identities=17%  Similarity=0.205  Sum_probs=42.1

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc--cc--cccHH-HHHHHHhCCcEEEEeccc-
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT--GA--RYPYL-WMRIAQENDWHILIDACA-  281 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T--G~--~~pl~-~i~~a~e~g~~vlvDAaq-  281 (603)
                      ..|++++.+-.   +.+....|+++.|.+      +|.++-.-|.||..  |.  ..|++ ++++||++++++++|+++ 
T Consensus       110 ~sGa~lvEVGt---tN~t~~~Dye~AI~e------~Ta~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG  180 (367)
T PF03841_consen  110 QSGARLVEVGT---TNRTHLSDYEKAITE------NTAALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSG  180 (367)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHT--EEEE-TTH
T ss_pred             ccccccccccc---ccccccccccccccc------cccccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCC
Confidence            34555555442   335567888888875      68888888888873  33  34565 567999999999999987 


Q ss_pred             --------cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          282 --------LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       282 --------~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                              ..|....--+.-..++|.++||+-|.+|+ |+ .|+++.||+.++.++.
T Consensus       181 ~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGG-PQ-aGiI~Gkk~lI~~lk~  235 (367)
T PF03841_consen  181 LLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGG-PQ-AGIIVGKKELIEKLKK  235 (367)
T ss_dssp             HHHHHHTT----------CCCCT-SEEEEETTSSSSS--S--EEEEEEHHHHHHHHH
T ss_pred             CCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCC-CC-eEEEEeCHHHHHHHhh
Confidence                    22221000112246899999999999998 87 6999999999877763

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=98.07  E-value=0.00048  Score=73.10  Aligned_cols=228  Identities=13%  Similarity=0.148  Sum_probs=135.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH-HHHHHhCCcEEEEeccccCCCC-CCCCCCC-----CCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW-MRIAQENDWHILIDACALGPKD-MDSFGLS-----LVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~-i~~a~e~g~~vlvDAaq~~~~~-m~~ldls-----~~~~D  298 (603)
                      |+++|+++|..-.  +..+++|+|-.+..++|.+-|+++ +..|+++|+...||-+..+|-- -.--++.     ..++|
T Consensus       288 D~~hL~~lL~~~~--~svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvD  365 (570)
T KOG1360|consen  288 DLDHLEQLLQSSP--KSVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVD  365 (570)
T ss_pred             CHHHHHHHHHhCC--CCCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhh
Confidence            6889999987522  246799999999999999999985 5699999999999976544320 0011121     24678


Q ss_pred             EEEEcccccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          299 FLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      .|+...=|-||.    +|.-+.. +.+.+.++ ++-.|-+                               |-...|+..
T Consensus       366 iIsGTLgKafGc----VGGYIAat~~LvDmiR-SyAaGFI-------------------------------FTTSLPP~v  409 (570)
T KOG1360|consen  366 IISGTLGKAFGC----VGGYIAATRKLVDMIR-SYAAGFI-------------------------------FTTSLPPMV  409 (570)
T ss_pred             hcccchhhhccc----ccceehhhhhHHHHHH-HhcCceE-------------------------------EecCCChHH
Confidence            888888888772    4443332 22322222 1211211                               111112221


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                       ..|               ++                         .+++++..- |......| +.-..++.+.|.++ 
T Consensus       410 -l~G---------------Al-------------------------eaVr~lk~~eg~~lR~~h-qrnv~~~kq~l~~~-  446 (570)
T KOG1360|consen  410 -LAG---------------AL-------------------------EAVRILKSEEGRVLRRQH-QRNVKYVKQLLMEL-  446 (570)
T ss_pred             -HHh---------------HH-------------------------HHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHc-
Confidence             111               11                         355555432 32222222 23344666666665 


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                           |.|++        ..-..||-..|-|..   .....-..|..++||.|-+-     .+..               
T Consensus       447 -----GiPVi--------~~pSHIiPv~vgda~---l~~~~sd~Li~~h~iYvQaI-----NyPT---------------  490 (570)
T KOG1360|consen  447 -----GIPVI--------PNPSHIIPVRVGDAA---LAKQASDILISKHNIYVQAI-----NYPT---------------  490 (570)
T ss_pred             -----CCccc--------CCCcceeeeeccCHH---HHHHHHHHHHHhcCeEEEec-----cCCc---------------
Confidence                 67765        223568888887743   22333445678899998532     1110               


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                   -.++..-+|+......|++=++.|++.+....++
T Consensus       491 -------------V~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~  524 (570)
T KOG1360|consen  491 -------------VARGTERLRIAPTPHHTPQMMNILVNALLDVWNE  524 (570)
T ss_pred             -------------ccccceeeecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                         0133457999999999999999999999877665

>PTZ00376 aspartate aminotransferase; Provisional

Probab=98.06  E-value=0.00036  Score=76.08  Aligned_cols=110  Identities=11%  Similarity=0.072  Sum_probs=72.9

Q ss_pred             HHHHcCCEEEEEecc-CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~-~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|++++.++.. ..+..++.+.+++.+...   +++++++.++.-+|.||..++.+.+    ++|+++|++++.|-
T Consensus       140 ~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De  216 (404)
T PTZ00376        140 IFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA---PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDM  216 (404)
T ss_pred             HHHHcCCceeeccccCcccCCcCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeh
Confidence            456678888888872 123578899999988631   1346889999999999999998733    35789999999998


Q ss_pred             cc--cCCCCC----CC-CCCCCCC-CcEEEEcccccCCCCCCc--eEEEE
Q 007454          280 CA--LGPKDM----DS-FGLSLVR-PDFLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       280 aq--~~~~~m----~~-ldls~~~-~Dflv~S~hK~fG~~P~G--~G~L~  319 (603)
                      +-  +.....    .+ ..+.... -=+++.||=|.||  ..|  +|.++
T Consensus       217 ~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~--~~GlRvG~~~  264 (404)
T PTZ00376        217 AYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMG--LYGERIGALH  264 (404)
T ss_pred             hhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccc--ccccccceEE
Confidence            62  111000    00 1111111 1278899999999  335  77774

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=98.05  E-value=0.00061  Score=73.23  Aligned_cols=108  Identities=17%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-cccHHHH-HHHHhCCcEEEEeccc---c
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYPYLWM-RIAQENDWHILIDACA---L  282 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~pl~~i-~~a~e~g~~vlvDAaq---~  282 (603)
                      -.|.+|+.++.+ .+|.||+++|++++..      ++.-+-++.- |..|. --.|..| ++.|++|..|..|+|-   .
T Consensus       176 m~G~~VV~V~~~-~~G~VDlddLk~k~~~------~~AalMiTnP-sT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~  247 (496)
T COG1003         176 MAGFKVVVVKCD-ENGNVDLDDLRAKAED------NLAALMITNP-STLGVFEEDIREICEIVHEAGGQVYYDGANLNAI  247 (496)
T ss_pred             hcCceEEEEecC-CCCCccHHHHHHHhcc------ceeEEEeccC-cccccchhhHHHHHHHHHHcCCEEEecCcchhhh
Confidence            359999999998 6999999999999873      3333333322 44565 4556644 5789999999999974   4


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccC------CCCCCceEEEEEeCCCCcCcC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIF------GENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~f------G~~P~G~G~L~vkk~~~~~L~  329 (603)
                      +|.. .|   -+++.|.+=+..||.|      |+ | |.|=.-||+.+..-|.
T Consensus       248 vG~~-rP---Gd~G~DV~HlNLHKTF~iPHGGGG-P-G~GPvgVk~~L~pfLP  294 (496)
T COG1003         248 VGLA-RP---GDMGFDVVHLNLHKTFCIPHGGGG-P-GAGPVGVKAHLAPFLP  294 (496)
T ss_pred             hccc-cc---cccccceEEeecccccccCCCCCC-C-CCCceehHhhccccCC
Confidence            4441 23   3578999999999976      33 3 7888999987765443

>PRK06062 hypothetical protein; Provisional

Probab=98.04  E-value=0.00029  Score=78.18  Aligned_cols=96  Identities=11%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .++|+++|...  ..++...|.+--+...-|.+.|    ++.+. +|+++|+++++|=+|.+ |..  |--.+.-...||
T Consensus       200 ~~~le~~l~~~--~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PD  277 (451)
T PRK06062        200 LAHLERVIELE--GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPD  277 (451)
T ss_pred             HHHHHHHHHhc--CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCC
Confidence            46677777531  1124444444334456799988    66554 79999999999987663 221  101111234699


Q ss_pred             EEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGENPSG---FGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~  329 (603)
                      ++++  =|-+|+   |   +|+++.++++++.+.
T Consensus       278 i~t~--gK~lgg---G~~Pigav~~~~~i~~~~~  306 (451)
T PRK06062        278 LITF--AKGVNS---GYVPLGGVAISEAIAATFA  306 (451)
T ss_pred             eeee--chhhhc---CCcCcEEEEEcHHHHHHhc
Confidence            7765  586663   3   799999988776554

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=98.03  E-value=0.0031  Score=69.45  Aligned_cols=226  Identities=14%  Similarity=0.115  Sum_probs=127.5

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccc-c---HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-P---YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-p---l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Df  299 (603)
                      +.+++.+... ....+...|.+.-+.+.+|... |   ++.+ ++|+++|+++++|=++.+ +..  |..+.--...||+
T Consensus       184 ~~l~~~~~~~-~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi  262 (421)
T PRK09792        184 DAIERLFKSD-IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDL  262 (421)
T ss_pred             HHHHHHHHhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcE
Confidence            6677777521 0113466666666688899765 6   3434 468999999999986553 221  1111111246996


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      +  ++=|.+|. ---+|+++.++++++.+.+...+++                                +  +..++...
T Consensus       263 ~--t~gK~l~~-G~pigav~~~~~i~~~~~~~~~~~T--------------------------------~--~gnpl~~a  305 (421)
T PRK09792        263 M--TMAKSLAG-GMPLSGVVGNANIMDAPAPGGLGGT--------------------------------Y--AGNPLAVA  305 (421)
T ss_pred             E--EeehhhcC-CCceEEEEEcHHHHhccCCCCcCCC--------------------------------C--CCCHHHHH
Confidence            4  55787651 0128899998887655543111111                                0  11111111


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      +++                                         +.++++++   +...++++.+.+++.+.|..|..  
T Consensus       306 aa~-----------------------------------------a~l~~l~~---~~~~~~~~~~g~~l~~~l~~l~~--  339 (421)
T PRK09792        306 AAH-----------------------------------------AVLNIIDK---ESLCERANQLGQRLKNTLIDAKE--  339 (421)
T ss_pred             HHH-----------------------------------------HHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHH--
Confidence            111                                         35666544   24566788888888888877631  


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCC-Cc--cCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKR-EK--IEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g-~~--v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                        ..|.+.  .+   .-+|.++.+.+.+.+. +.  .....+...+-++||.+..   +                     
T Consensus       340 --~~p~v~--~v---rG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~---~---------------------  388 (421)
T PRK09792        340 --SVPAIA--AV---RGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLT---C---------------------  388 (421)
T ss_pred             --hCCCcc--ee---cccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEee---c---------------------
Confidence              112221  11   2357788888865321 10  0112233333457887731   0                     


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                    .....+||+.+.+-.|.+||+++++.|.+.|.
T Consensus       389 --------------g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        389 --------------GAYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             --------------CCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence                          00124899999999999999999999988763

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.02  E-value=0.009  Score=66.59  Aligned_cols=107  Identities=9%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCcc-C---HHHH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREKI-E---PVLV  498 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~v-~---~~~V  498 (603)
                      +.|+.+.+   +.+.++++.+.++|.++|.++...    .|.| .|-      .+|..+++.+.+.....- .   ...+
T Consensus       340 a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~----~~~i~~vr------G~Gl~~~ve~~~~~~~~~~~~~~~~~~  406 (459)
T PRK06082        340 ATIEVIEQ---EGLLEKVKADSQFMRERLLEMKAK----YPLIGDVR------GIGLLWGVELVTDRHTKERAYDEAEAV  406 (459)
T ss_pred             HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhh----CCCeeeee------eccceeEEEEccCccccCccHHHHHHH
Confidence            46776654   246678888899999999876311    1222 222      357788887753211100 0   1122


Q ss_pred             HHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          499 QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       499 ~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                      ...+-++||.++.                                        ....+||++.-+..|.+||+++++.+.
T Consensus       407 ~~~~~~~Gvl~~~----------------------------------------~~~~~i~~~Ppl~it~~eid~~~~~l~  446 (459)
T PRK06082        407 LYRCLNNGLSFKV----------------------------------------SQGNVIQLSPPLIITREELTQALAILE  446 (459)
T ss_pred             HHHHHhCCCEEEe----------------------------------------cCCCEEEEeCCCccCHHHHHHHHHHHH
Confidence            2333356665531                                        012589999999999999999999999


Q ss_pred             HHHhh
Q 007454          579 QFLDA  583 (603)
Q Consensus       579 ~~l~~  583 (603)
                      +.|.+
T Consensus       447 ~~l~~  451 (459)
T PRK06082        447 EAIAK  451 (459)
T ss_pred             HHHHH
Confidence            88865

>PRK13578 ornithine decarboxylase; Provisional

Probab=98.02  E-value=0.0014  Score=76.11  Aligned_cols=149  Identities=16%  Similarity=0.139  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEe---------------------ccCchHHHHHHH-HHHcCCEEEEEeccCCc----c
Q 007454          170 GLESAMKKRIMDFLNISENDYVYD---------------------YESEAVEAMIRT-SEKRGARVMSAEFSWPR----L  223 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~---------------------~es~sV~~~~~~-a~~~Ga~V~~~~~~~~~----g  223 (603)
                      ..+.+|-+.+|+.+|++..=++-.                     ..-|++.++... ..-.|++.+++...+..    |
T Consensus       174 G~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi~g  253 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGFIG  253 (720)
T ss_pred             hHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCCcC
Confidence            567789999999999975544221                     011233333332 45579999998866521    3


Q ss_pred             ccCHH-----HHHHHHhhcC-C---CCCCeeEEEEeCccccccccccHHHHH-H-HHhCCcEEEEeccccC--CCCCCCC
Q 007454          224 RINSE-----KLRKMVVSKG-K---KKKQRGLFVFPLHSRMTGARYPYLWMR-I-AQENDWHILIDACALG--PKDMDSF  290 (603)
Q Consensus       224 ~i~~~-----~L~~~l~~~~-~---~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~-a~e~g~~vlvDAaq~~--~~~m~~l  290 (603)
                      .|+.+     .+++.|.... .   .++..++++++.- +--|+.++++.|. . ++.++ .+|+|-|..+  +-  .++
T Consensus       254 ~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F--~p~  329 (720)
T PRK13578        254 GIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQF--IPM  329 (720)
T ss_pred             CCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC-cEEEeCcchhhhcc--Ccc
Confidence            35544     4888887531 1   1122477777654 4589999999764 5 68888 9999975322  11  121


Q ss_pred             --CC----CCCCCc----EEEEcccccCCCCCCceEEEEEeCC
Q 007454          291 --GL----SLVRPD----FLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       291 --dl----s~~~~D----flv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                        ++    -..++|    |++-|.||..++ -+....|-+|.+
T Consensus       330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~  371 (720)
T PRK13578        330 MADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDN  371 (720)
T ss_pred             cccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCc
Confidence              11    135899    999999999885 666666666554

>PLN02672 methionine S-methyltransferase

Probab=97.97  E-value=0.0022  Score=77.37  Aligned_cols=147  Identities=15%  Similarity=0.179  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCCCC---cEEEeccCch----------------------HHHHHHHHHHcCCEEEEEeccC-Cccc
Q 007454          171 LESAMKKRIMDFLNISEN---DYVYDYESEA----------------------VEAMIRTSEKRGARVMSAEFSW-PRLR  224 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~---e~vf~~es~s----------------------V~~~~~~a~~~Ga~V~~~~~~~-~~g~  224 (603)
                      ..+..++.+++..|++.+   ++++...+..                      -......++..|++++.++.+. .+..
T Consensus       735 lr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~  814 (1082)
T PLN02672        735 PRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFK  814 (1082)
T ss_pred             HHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCC
Confidence            456788888888888653   6766433221                      1122344566799999998852 2356


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc----CCCCCCCCCCC---
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL----GPKDMDSFGLS---  293 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~----~~~~m~~ldls---  293 (603)
                      ++.++|++.+...+   .+.-+++.|. .|.||.+++.+.+    +.|+++|++|++|-+-.    .+..-...++.   
T Consensus       815 lD~d~Le~al~~~~---~~~I~L~nPn-hNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l  890 (1082)
T PLN02672        815 LTAKTLASTLETVK---KPWVYISGPT-INPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSIL  890 (1082)
T ss_pred             CCHHHHHHHhccCC---CCEEEEECcC-CCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHH
Confidence            78899999885310   1122333343 3999999998754    35789999999998632    12100001111   


Q ss_pred             -CCC---C--c-EEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          294 -LVR---P--D-FLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       294 -~~~---~--D-flv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                       .+.   .  . +++-|+=|-||.  .|  +|.++....
T Consensus       891 ~~~~~~sks~nVIvL~SfSKkf~l--pGLRIGylIap~~  927 (1082)
T PLN02672        891 SRLKSSNPSFAVALLGGLSTELLS--GGHEFGFLALNDS  927 (1082)
T ss_pred             HHhccccCCceEEEEeCcHHhhcc--HHHHheeEEeCCH
Confidence             111   1  1 345588888774  26  788877543

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=97.95  E-value=1.6e-05  Score=83.07  Aligned_cols=148  Identities=16%  Similarity=0.183  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeccC---c-------------------hHHHH---HHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYES---E-------------------AVEAM---IRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~es---~-------------------sV~~~---~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....+++.++|+++||.+..  +|...-   |                   ++...   -....-.|+++..++.+ ..|
T Consensus        28 D~~~~~l~~~i~~l~g~e~a--~f~~sGT~An~~al~~~~~~~~~vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~-~~G  104 (290)
T PF01212_consen   28 DPTTARLEERIAELFGKEAA--LFVPSGTMANQLALRAHLRPGESVICADTAHIHFDETGAIEELSGAKLIPLPSD-DDG  104 (290)
T ss_dssp             SHHHHHHHHHHHHHHTSSEE--EEESSHHHHHHHHHHHHHHTTEEEEEETTEHHHHSSTTHHHHHTTCEEEEEBEC-TGT
T ss_pred             ChhHHHHHHHHHHHcCCCEE--EEeCCCChHHHHHHHHHHhcCCceeccccceeeeeccchhhHhcCcEEEECCCc-ccC
Confidence            35677899999999997533  343210   0                   00000   01123368999988864 249


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHHHHH----HHHhCCcEEEEecccc------CCCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYLWMR----IAQENDWHILIDACAL------GPKDMDSFGL  292 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~~i~----~a~e~g~~vlvDAaq~------~~~~m~~ldl  292 (603)
                      .+++++|++.+.....-..++++|++...+|.. |.+||+++++    .||++|++|++|++=+      .+.  ..-++
T Consensus       105 ~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~  182 (290)
T PF01212_consen  105 KLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGV--SLAEI  182 (290)
T ss_dssp             BB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH--HHHHH
T ss_pred             CCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccc--cHHHH
Confidence            999999999998532112368999999877754 8899998664    4799999999999733      222  11122


Q ss_pred             CCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          293 SLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      . -.+|.+.+|++|-+|. | +=++|..+++.
T Consensus       183 ~-~~~D~v~~~~tK~~g~-~-~Gavl~~~~~~  211 (290)
T PF01212_consen  183 A-AGADSVSFGGTKNGGA-P-GGAVLAGNKEF  211 (290)
T ss_dssp             H-TTSSEEEEETTSTT-S-S-SEEEEEESHHH
T ss_pred             h-hhCCEEEEEEEccccc-c-cceEEEechHH
Confidence            2 4799999999998885 3 45666667664

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.95  E-value=0.00034  Score=75.41  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=76.8

Q ss_pred             HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEec
Q 007454          201 AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDA  279 (603)
Q Consensus       201 ~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDA  279 (603)
                      -+.+...+.|.++..++.+      +.+++++.+.      ++|.+|-+=.-+|.+..+.|++.+ ++||++|+.|+||.
T Consensus       132 ~l~~~~~~~gie~~~vd~~------~~~~~~~~i~------~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDn  199 (409)
T KOG0053|consen  132 ILRKFLPKFGGEGDFVDVD------DLKKILKAIK------ENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDN  199 (409)
T ss_pred             HHHHHHHHhCceeeeechh------hHHHHHHhhc------cCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeC
Confidence            3556677889998888765      3566777775      379999999999999999999966 48999999999999


Q ss_pred             cccCCCCCCCCCCCCCCCcEEEEcccccCCCC
Q 007454          280 CALGPKDMDSFGLSLVRPDFLICSFYQIFGEN  311 (603)
Q Consensus       280 aq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~  311 (603)
                      +=..|-   -++.=.+|+|.++-|.-|+||++
T Consensus       200 Tf~~p~---~~~pL~lGADIV~hSaTKyi~Gh  228 (409)
T KOG0053|consen  200 TFGSPY---NQDPLPLGADIVVHSATKYIGGH  228 (409)
T ss_pred             CcCccc---ccChhhcCCCEEEEeeeeeecCC
Confidence            866664   23333468999999999999853

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.94  E-value=0.0067  Score=67.75  Aligned_cols=227  Identities=19%  Similarity=0.243  Sum_probs=126.0

Q ss_pred             HHHHHHHHhhcCCCCCCeeE-EEEeCccccccccccHH-H---HH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGL-FVFPLHSRMTGARYPYL-W---MR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~L-v~~~~~Sn~TG~~~pl~-~---i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .++|++.|...   ..+... ++=|.+....|.+.|-. +   ++ +|+++|+++++|=+|.+ |..  |--...-...|
T Consensus       201 l~~le~~~~~~---~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~P  277 (466)
T PRK07030        201 FAHMEQTLAEH---HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRP  277 (466)
T ss_pred             HHHHHHHHHhC---CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCC
Confidence            34567777531   124444 44442344568866632 3   33 68999999999987653 321  11112223469


Q ss_pred             cEEEEcccccCC-CC-CCceEEEEEeCCCCcCcCCCCC-CCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          298 DFLICSFYQIFG-EN-PSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       298 Dflv~S~hK~fG-~~-P~G~G~L~vkk~~~~~L~p~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                      |+++++  |-+| +. |  +|++.+++++++.+.+..- .|.                             .  +-.+|.
T Consensus       278 Div~~g--Kgl~gG~~P--i~av~~~~ei~~~~~~~~~~~~~-----------------------------~--~h~~T~  322 (466)
T PRK07030        278 DFLCLS--KALTGGYLP--LAAVLTTDTVYQAFYDDYPTLRA-----------------------------F--LHSHSY  322 (466)
T ss_pred             CEEeee--hhccCCccc--ceEEEecHHHHHHHhcccccccc-----------------------------c--ccCCCC
Confidence            999984  6443 21 3  8999999887654431100 000                             0  001221


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      . ..+++++            +++                         +.|+.+++   +.+.++.+.+.++|.++|.+
T Consensus       323 ~-gnpla~a------------aa~-------------------------a~L~~i~~---~~l~~~~~~~G~~l~~~L~~  361 (466)
T PRK07030        323 T-GNPLACA------------AAL-------------------------ATLDIFEQ---DNVIENNRALARRMAEATAH  361 (466)
T ss_pred             C-CCHHHHH------------HHH-------------------------HHHHHHHh---cCHHHHHHHHHHHHHHHHHH
Confidence            0 1122222            011                         46777665   34567888889999999887


Q ss_pred             CCCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc--c--CH---HHHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454          455 LQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK--I--EP---VLVQKLADRENISLSYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       455 L~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~--v--~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~  526 (603)
                      |..     .|.| .+-      -+|..+.+.+.......  .  ..   ..+.+.+-++||.++.               
T Consensus       362 l~~-----~~~v~~vr------G~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~---------------  415 (466)
T PRK07030        362 LAD-----HPHVAEVR------QTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRP---------------  415 (466)
T ss_pred             Hhc-----CCCEEEeE------eceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEe---------------
Confidence            731     1222 122      35677777774322110  0  00   1122223345655431               


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                               .+ .+||+.+.+-.|.+||+.+++.+.+.|++-
T Consensus       416 -------------------------~g-~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        416 -------------------------LG-SVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             -------------------------cC-CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                                     11 379999999999999999999999998763

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=97.93  E-value=0.018  Score=62.28  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=55.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC---CCCCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG---PKDMDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~---~~~m~~ldls~~~~  297 (603)
                      +.+++++.+..      ++.-|.+-......|...|    ++.+. +|+++|+.+++|-+|.+   |+ |.....-.+.|
T Consensus       151 d~~~l~~~i~~------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~-~~a~~~~gv~P  223 (364)
T PRK04013        151 DVEAAKEAITK------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGK-FLAIEHYKVEP  223 (364)
T ss_pred             CHHHHHHHhcC------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCc-hhHHHhcCCCC
Confidence            35677777742      4555555555555676554    55554 78999999999998874   22 22222234679


Q ss_pred             cEEEEcccccCCC-CCCceEEEEEeCCC
Q 007454          298 DFLICSFYQIFGE-NPSGFGCLFVKKST  324 (603)
Q Consensus       298 Dflv~S~hK~fG~-~P~G~G~L~vkk~~  324 (603)
                      |.+++  =|-+|+ -|  +|+++.+++.
T Consensus       224 Div~~--gK~lggG~P--~~a~~~~~~~  247 (364)
T PRK04013        224 DIVTM--GKGIGNGVP--VSLTLTNFDV  247 (364)
T ss_pred             CEEEe--cccccCCce--eEEEEecccc
Confidence            99888  475542 13  6888777654

>PRK06917 hypothetical protein; Provisional

Probab=97.92  E-value=0.012  Score=65.26  Aligned_cols=233  Identities=13%  Similarity=0.197  Sum_probs=128.9

Q ss_pred             HHHHHHHhhcCCCCCCe-eEEEEeCcccccccccc-HHHH----HHHHhCCcEEEEeccccC-CCCCCC---CCCCCCCC
Q 007454          228 EKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYP-YLWM----RIAQENDWHILIDACALG-PKDMDS---FGLSLVRP  297 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~p-l~~i----~~a~e~g~~vlvDAaq~~-~~~m~~---ldls~~~~  297 (603)
                      +.|++.+....  .+++ .+++=|.+.+.-|.+.| -.++    ++|+++|+++++|=+|.+ |.. ..   ...-...|
T Consensus       186 ~~le~~i~~~~--~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRt-G~~~a~~~~gv~P  262 (447)
T PRK06917        186 TELETAIERIG--AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRT-GAMFAMEHWGVEP  262 (447)
T ss_pred             HHHHHHHHhcC--CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcc-cchhhHHhcCCCC
Confidence            45666665311  1233 45555666666677665 3343    258999999999987653 221 11   11123469


Q ss_pred             cEEEEcccccCCC-C-CCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFGE-N-PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG~-~-P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |++++  =|.+|+ . |  +|++.+++++++.+.+..  +.+                               +-.+|.+
T Consensus       263 Di~~~--gK~l~~G~~P--i~a~~~~~~i~~~~~~~~--~~~-------------------------------~~~~T~~  305 (447)
T PRK06917        263 DIMTL--GKGLGAGYTP--IAATVVSDRVMEPILRGS--RSI-------------------------------MSGHTLS  305 (447)
T ss_pred             CEEEe--eehhccCCcc--eEEEEEcHHHHHHHhccC--ccc-------------------------------ccccCCC
Confidence            98776  476652 1 2  799999988765443210  100                               0012211


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                       ..+++++            +++                         +.|+.+++-   .+.++++.+.++|.+.|.+|
T Consensus       306 -gnpl~~a------------aa~-------------------------a~l~~l~~~---~l~~~~~~~g~~l~~~L~~l  344 (447)
T PRK06917        306 -ANPLSAA------------TAL-------------------------AVLEYMEKH---NLPEKAAEKGEYLIKGLQKV  344 (447)
T ss_pred             -CCHHHHH------------HHH-------------------------HHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
Confidence             0112222            011                         466666543   45678888889999888877


Q ss_pred             CCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          456 QHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       456 ~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      ...    .|++ .|-      .+|.++.+.+.+...  +...     ...+.+.+-++||.++......           
T Consensus       345 ~~~----~~~i~~vr------G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~-----------  403 (447)
T PRK06917        345 QQQ----STIIGDVR------GKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ-----------  403 (447)
T ss_pred             Hhc----CCCEEEEe------ecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc-----------
Confidence            421    1222 222      356677777742111  1110     1223333445788775321000           


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                            ......++|+++.+..|.+||+++++.+.+.|++-
T Consensus       404 ----------------------~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        404 ----------------------DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             ----------------------CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                                  00112589999999999999999999999998764

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=97.91  E-value=0.0012  Score=71.78  Aligned_cols=131  Identities=12%  Similarity=0.150  Sum_probs=87.5

Q ss_pred             HHHHHHHHcCCCCCcEEEecc-CchH-HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc
Q 007454          175 MKKRIMDFLNISENDYVYDYE-SEAV-EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH  252 (603)
Q Consensus       175 aR~~Ia~~lna~~~e~vf~~e-s~sV-~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~  252 (603)
                      +...+..|+... +.++.... -... ...-...++.|.+|.+++..      +.+++.+++.+     ++|++|-+=.-
T Consensus        91 I~~~~l~ll~~G-D~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~------~~~~~~~~~~~-----~~tk~v~lEtP  158 (396)
T COG0626          91 ISTALLALLKAG-DHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG------DDEALEAAIKE-----PNTKLVFLETP  158 (396)
T ss_pred             HHHHHHHhcCCC-CEEEecCCccchHHHHHHHHHHhcCeEEEEECCC------ChHHHHHHhcc-----cCceEEEEeCC
Confidence            333466677642 33433211 1111 22234456789999988754      23455555542     37999999999


Q ss_pred             cccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          253 SRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       253 Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      +|.+-.+.||..| ++|+++|+.|+||-+=+.|--..||+   +++|.++-|.-|.+|+.--=+|.+++
T Consensus       159 sNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q~PL~---~GaDIVvhSaTKyl~GHsDvl~G~v~  224 (396)
T COG0626         159 SNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQRPLE---LGADIVVHSATKYLGGHSDVLGGVVL  224 (396)
T ss_pred             CCcccccccHHHHHHHHHhcCCEEEEECCcccccccChhh---cCCCEEEEeccccccCCcceeeeEEe
Confidence            9999999999966 48999999999999866664223554   58999999999988753222555554

>PRK06105 aminotransferase; Provisional

Probab=97.90  E-value=0.0012  Score=73.55  Aligned_cols=228  Identities=14%  Similarity=0.157  Sum_probs=128.3

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Df  299 (603)
                      ++|+++|....  .++..-|.+--+...-|.+.|    ++.+. +|+++|+++++|=+|. .|..  |--.+.....||+
T Consensus       205 ~~le~~~~~~~--~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi  282 (460)
T PRK06105        205 NELEALILAEG--PDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDI  282 (460)
T ss_pred             HHHHHHHHHcC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCe
Confidence            56777774211  124555555334456788877    55453 7899999999998874 3321  1112223456998


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      ++++  |-+|+.-.-+|+++.++++++.+.+.... |...                               -.+|.+ ..
T Consensus       283 ~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~-------------------------------h~~T~~-gn  328 (460)
T PRK06105        283 LVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFG-------------------------------HGFTAS-GH  328 (460)
T ss_pred             eeee--cccccCcccceEEEEcHHHHHHHhcccccCcccc-------------------------------cCCCCC-CC
Confidence            8764  75552000178999988876555421100 1100                               011211 11


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      +++.+            .+                         .+.|+.+++   +.+.++++.+.++|.++|.+|. .
T Consensus       329 pl~~a------------aa-------------------------~a~L~~i~~---~~l~~~v~~~g~~l~~~L~~l~-~  367 (460)
T PRK06105        329 PVAAA------------VA-------------------------LENLAIIEE---RDLVGNAAERGARLQARLRALA-D  367 (460)
T ss_pred             HHHHH------------HH-------------------------HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHhh-c
Confidence            22222            01                         146777765   3456788888899999998873 1


Q ss_pred             CCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCC--ccCH-----HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          459 NTEGNALV-KIYGPKIRFDRGPALAFNVFDWKRE--KIEP-----VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       459 ~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~--~v~~-----~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                          .|.| .|-      .+|-++.+.+......  ...+     ..+.+.+-++||.++.                   
T Consensus       368 ----~~~v~~vr------G~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~-------------------  418 (460)
T PRK06105        368 ----HPLVGEVR------GVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRA-------------------  418 (460)
T ss_pred             ----CCCeEEEE------ecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEe-------------------
Confidence                2222 222      2566777777432211  1110     1233333456666531                   


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                           . ..+||+++-+.-|.+||+++++.|.+.|.+
T Consensus       419 ---------------------~-g~~i~l~Ppl~it~~eid~~~~~l~~~l~~  449 (460)
T PRK06105        419 ---------------------M-GDTLAFCPPLIITAAQVDEMVDRFGRALDD  449 (460)
T ss_pred             ---------------------c-CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence                                 1 148999999999999999999999988865

>PRK12403 putative aminotransferase; Provisional

Probab=97.89  E-value=0.013  Score=65.45  Aligned_cols=98  Identities=18%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Df  299 (603)
                      ++|++.|....  ..++..|.+--+...-|.+.|    ++.+. +|+++|+++++|=+|.+ |..  |-..+.-...||+
T Consensus       209 ~~le~~~~~~~--~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDi  286 (460)
T PRK12403        209 LQLEEKILELG--AENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDT  286 (460)
T ss_pred             HHHHHHHHHhC--CCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCe
Confidence            45655554211  124544444444555698888    76554 79999999999987743 221  1111112245999


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      ++  +=|-+|+.-.-+|++++++++++.+.
T Consensus       287 v~--~gK~lggG~~Piga~v~~~~i~~~~~  314 (460)
T PRK12403        287 LS--IAKGLTSGYVPMGGLVLSKRIAEALV  314 (460)
T ss_pred             EE--EcccccccccceEEEEECHHHHHHHh
Confidence            97  45765520001788888887765443

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=97.88  E-value=0.0016  Score=72.25  Aligned_cols=82  Identities=12%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             CeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC---CCCCCCCCcEEEEcccccCCC-CC
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS---FGLSLVRPDFLICSFYQIFGE-NP  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~---ldls~~~~Dflv~S~hK~fG~-~P  312 (603)
                      ++..|.+--+....|.+.|    ++.+ ++|+++|+.+++|=++. .|.. ..   ...-...||++++  =|-+|. .|
T Consensus       207 ~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~Grt-G~~~a~~~~gv~pDi~t~--gK~l~~G~p  283 (445)
T PRK08593        207 EVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRT-GKWSSISHFNITPDLMSF--GKSLAGGMP  283 (445)
T ss_pred             ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcC-chHHHHHhcCCCCCEeee--cccccCCcc
Confidence            4666555556667898877    5545 47899999999998763 2221 11   1111346897765  475552 12


Q ss_pred             CceEEEEEeCCCCcCcC
Q 007454          313 SGFGCLFVKKSTVPILV  329 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~  329 (603)
                        +|++..++++++.+.
T Consensus       284 --~gav~~~~~i~~~~~  298 (445)
T PRK08593        284 --MSAIVGRKEIMESLE  298 (445)
T ss_pred             --cEEEEEcHHHHhhhc
Confidence              789999988765553

>PLN00144 acetylornithine transaminase

Probab=97.88  E-value=0.0011  Score=71.89  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             CHHHHHHHHhhcCCCCCCe-eEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~  296 (603)
                      +.+.|++.+..     .+. .+++-|. .|..|...|    ++.+ ++|+++|+++++|=++.+ +..  +.+.++..+.
T Consensus       155 d~~~l~~~~~~-----~~~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~  228 (382)
T PLN00144        155 NLEAARKLIQK-----GKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVE  228 (382)
T ss_pred             CHHHHHHhcCC-----CCeEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCC
Confidence            57888887742     234 4555565 555555443    3333 478999999999987543 221  1122345567


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ||  +.++=|.+|. --=+|++++++++++.+.+...+++          |                        +..+.
T Consensus       229 PD--i~t~sK~l~~-G~pig~v~~~~~~~~~~~~~~~~~T----------~------------------------~~~pl  271 (382)
T PLN00144        229 PD--IMTLAKPLAG-GLPIGAVLVTEKVASAINPGDHGST----------F------------------------AGGPL  271 (382)
T ss_pred             CC--EEEecccccC-CcceEEEEEcHHHHhccCCCCCCCC----------C------------------------CCCHH
Confidence            99  4555686651 0128999998887765543211110          0                        11111


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ...+++                                         +.|+++++   ..+.++++.+.++|.+.|.++-
T Consensus       272 ~~aaa~-----------------------------------------a~l~~i~~---~~~~~~~~~~g~~l~~~l~~~~  307 (382)
T PLN00144        272 VCNAAL-----------------------------------------AVLDKISK---PGFLASVAKKGEYLRELLRRKL  307 (382)
T ss_pred             HHHHHH-----------------------------------------HHHHHHhh---chHHHHHHHHHHHHHHHHHHHH
Confidence            111111                                         46677654   3556677777777777776542


Q ss_pred             CCCCCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      .    +.|. ..+-|      +|..+.+.+ +++.     ..+...+.++||.+..+                       
T Consensus       308 ~----~~~~~~~vrg------~G~~~~l~l-~~~~-----~~~~~~~~~~Gv~i~~~-----------------------  348 (382)
T PLN00144        308 G----GNPHVKEVRG------VGLLVGIQL-DVPA-----GPLVDACRDSGLLVLTA-----------------------  348 (382)
T ss_pred             h----hCCCceeeec------CceEEEEEe-cCcc-----HHHHHHHHHCCeEEeec-----------------------
Confidence            1    0121 22222      567777777 3322     23444556789887643                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    . . ..+||++++..-|.+||+..++.|.+.|..
T Consensus       349 --------------~-~-~~~lrl~p~~~~~~~~i~~~~~~l~~~l~~  380 (382)
T PLN00144        349 --------------G-K-GDVVRLVPPLVISEAELEQAVEILADCLPA  380 (382)
T ss_pred             --------------C-C-CCEEEEeCCCccCHHHHHHHHHHHHHHHHh
Confidence                          0 0 148999999978899999999999988753

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.002  Score=69.65  Aligned_cols=148  Identities=15%  Similarity=0.216  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEec----c-----------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          171 LESAMKKRIMDFLNISENDYVYDY----E-----------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~----e-----------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      +-.+.-+.+|+|+|.+.. ++|..    +                 ..+...++.-|+-.|+.++...-+      +..+
T Consensus       183 ~hkelE~l~A~f~g~e~a-~vF~mGf~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN------dm~~  255 (519)
T KOG1357|consen  183 EHKELEELVARFLGVEDA-IVFSMGFATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN------DMQG  255 (519)
T ss_pred             HHHHHHHHHHHhcCCcce-EEEeccccccccCcceeecCCcceeeccccchheeccccccCceEEEEecC------CHHH
Confidence            344666789999998544 44421    1                 012233445566678888877643      3566


Q ss_pred             HHHHHhh-------cCCCCCCeeEEEEeCccccccccccHH-HHHHHHhCCcEEEEeccccCCCCCCC--------CCCC
Q 007454          230 LRKMVVS-------KGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKDMDS--------FGLS  293 (603)
Q Consensus       230 L~~~l~~-------~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i~~a~e~g~~vlvDAaq~~~~~m~~--------ldls  293 (603)
                      |+++|+.       ++.+.-+.-++++-....+-|.+-.+. .+++.+++.+++++|.+.++|- |.+        ..+.
T Consensus       256 LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA-~g~tGrgvce~~g~d  334 (519)
T KOG1357|consen  256 LERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGA-MGATGRGVCEYFGVD  334 (519)
T ss_pred             HHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccc-cCCCCcceeeccCCC
Confidence            6666652       111112445777778888899999997 5578899999999999877764 222        2233


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      ...+|.+-..|-|.||.   +-|.+-.++...+.|+
T Consensus       335 ~~dvDImMGtftKSfga---~GGyiagsk~lid~lr  367 (519)
T KOG1357|consen  335 PEDVDIMMGTFTKSFGA---AGGYIAGSKELIDYLR  367 (519)
T ss_pred             chhheeecceehhhccc---ccceecCcHHHHhhhc
Confidence            44688999999999984   4455656666665444

>PRK07483 hypothetical protein; Provisional

Probab=97.85  E-value=0.019  Score=63.64  Aligned_cols=233  Identities=12%  Similarity=0.145  Sum_probs=127.8

Q ss_pred             HHHHHHHhhcCCCCCCe-eEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          228 EKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      ++|++.+....  .+++ .+++=|.+...-|.+.|    ++.++ +|+++|+++++|=+|.+ |..  |--...-...||
T Consensus       186 ~~l~~~~~~~~--~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD  263 (443)
T PRK07483        186 DELEAKILELG--PDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPD  263 (443)
T ss_pred             HHHHHHHHhcC--CCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCC
Confidence            46666564211  1234 45555666555687776    33343 68999999999987763 221  001111234699


Q ss_pred             EEEEcccccCCC-C-CCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          299 FLICSFYQIFGE-N-PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       299 flv~S~hK~fG~-~-P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      .++++  |-+|+ . |  +|++++++++++.+.+..  +.+                               .-.+|.. 
T Consensus       264 iv~~g--K~l~gG~~P--i~av~~~~~i~~~~~~~~--~~~-------------------------------~h~~T~~-  305 (443)
T PRK07483        264 LVTIA--KGLGAGYQP--IGAVLASDRIYDAIADGS--GFF-------------------------------QHGHTYL-  305 (443)
T ss_pred             eeeeh--hhhccCccc--cEEEEEcHHHHHHHhcCC--Ccc-------------------------------ccCCCCC-
Confidence            98883  65442 1 2  899999988865554210  000                               0011110 


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ..+++++            +++                         +.|+.+++   +.+.++++.+.++|.++|+++.
T Consensus       306 gnpl~~a------------aa~-------------------------a~l~~i~~---~~l~~~~~~~g~~l~~~L~~l~  345 (443)
T PRK07483        306 GHATACA------------AAL-------------------------AVQRVIAE---DGLLANVRARGEQLRARLRERL  345 (443)
T ss_pred             CCHHHHH------------HHH-------------------------HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHH
Confidence            0112222            011                         46666655   3456677888888888887652


Q ss_pred             CCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          457 HPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       457 h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      .    ..|+| .|-      -+|-++.+.+.+.++  +..+     ...+.+.+-++||.++....+.            
T Consensus       346 ~----~~~~i~~vR------G~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~------------  403 (443)
T PRK07483        346 G----QHPHVGDIR------GRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTI------------  403 (443)
T ss_pred             h----cCCCeeeEe------ecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCccc------------
Confidence            1    11222 222      356677777743221  1111     1234444456788775310000            


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                     +      .....++|+.+-+.-|.+|||++++.|.+.|.+
T Consensus       404 ---------------~------~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~  437 (443)
T PRK07483        404 ---------------D------GVRGDHVLLAPPFIITAAQIDEIVERLGDAIDA  437 (443)
T ss_pred             ---------------c------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                           0      011248999999999999999999999998865

>PRK08354 putative aminotransferase; Provisional

Probab=97.84  E-value=0.011  Score=62.24  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=78.2

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCc-hHHHHHHHHHHcCCEEEEEeccCCc--------------cccCHHHHHHHHhhcC
Q 007454          174 AMKKRIMDFLNISENDYVYDYESE-AVEAMIRTSEKRGARVMSAEFSWPR--------------LRINSEKLRKMVVSKG  238 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~-sV~~~~~~a~~~Ga~V~~~~~~~~~--------------g~i~~~~L~~~l~~~~  238 (603)
                      ..|+.|++++|   ++++.+..++ ++..+.... ..|.+|......|+.              ..++.+.|++.+.   
T Consensus        44 ~l~~~ia~~~~---~~I~vt~G~~~al~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~~l~~~~~---  116 (311)
T PRK08354         44 WLEEEFSKLFG---EPIVITAGITEALYLIGILA-LRDRKVIIPRHTYGEYERVARFFAARIIKGPNDPEKLEELVE---  116 (311)
T ss_pred             HHHHHHHHHHC---CCEEECCCHHHHHHHHHHhh-CCCCeEEEeCCCcHHHHHHHHHcCCEEeecCCCHHHHHHhhc---
Confidence            56888888887   3676665432 333333222 245444433322211              1246777877664   


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc--cCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA--LGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq--~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                          +++++++..-+|.||..+|.+.+    +.|+++|+++++|-+-  +.... ...  + ..--+++-|+=|.||.  
T Consensus       117 ----~~~~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~~--~-~~~vi~~~S~SK~~~l--  186 (311)
T PRK08354        117 ----RNSVVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP-ESP--E-GENIIKLRTFTKSYGL--  186 (311)
T ss_pred             ----CCCEEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc-ccc--C-CCcEEEEeccHhhcCC--
Confidence                24566666668999999998633    3568899999999863  21110 111  1 2234788899999995  


Q ss_pred             Cc--eEEEEE
Q 007454          313 SG--FGCLFV  320 (603)
Q Consensus       313 ~G--~G~L~v  320 (603)
                      .|  +|.++.
T Consensus       187 ~GlRiG~~v~  196 (311)
T PRK08354        187 PGIRVGYVKG  196 (311)
T ss_pred             ccceeeeeee
Confidence            36  688776

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=97.83  E-value=3.6e-05  Score=82.11  Aligned_cols=133  Identities=13%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CcEEEeccCchHHHHHHHHHHcC---CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH
Q 007454          188 NDYVYDYESEAVEAMIRTSEKRG---ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW  264 (603)
Q Consensus       188 ~e~vf~~es~sV~~~~~~a~~~G---a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~  264 (603)
                      .=+.|+.+. ++-++...|.--|   ..+..++.+ .+|++..++|+++|...+.+.-.+-+|..++-+-|-|+.=|+..
T Consensus       197 ~lilFtSee-sHYSi~kaAa~lg~gtd~c~~v~t~-e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~  274 (510)
T KOG0629|consen  197 PLILFTSEE-SHYSIKKAAAFLGLGTDHCIKVKTD-ERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNG  274 (510)
T ss_pred             cEEEEeccc-chhhHHHHHHHhccCCceeEEeccc-ccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHH
Confidence            344666543 3444455555556   678888888 58999999999998764333334689999999999999999996


Q ss_pred             HH-HHHhCCcEEEEeccccCCCCCCCCC----CC-CCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          265 MR-IAQENDWHILIDACALGPKDMDSFG----LS-LVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       265 i~-~a~e~g~~vlvDAaq~~~~~m~~ld----ls-~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      |+ .|+.++.++|||||-.+|- |.+..    |+ .-++|-++.+.||+.|. |.-.++++.|.+-
T Consensus       275 iadiC~k~~lWmHvDAAwGGgl-LmS~k~R~kl~Giera~SvtwnpHK~~ga-plqCsa~l~r~~g  338 (510)
T KOG0629|consen  275 IADICEKHKLWMHVDAAWGGGL-LMSRKHRHKLTGIERANSVTWNPHKLMGA-PLQCSAFLTREEG  338 (510)
T ss_pred             HHHHHHhcCEEEEeeccccccc-ccChhhHhhccCccccCceeecHHHhhcC-cchhhHHHHHHHH
Confidence            65 8999999999999866654 11211    11 13689999999999998 8888888888654

>PRK12566 glycine dehydrogenase; Provisional

Probab=97.83  E-value=0.00093  Score=79.11  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=132.2

Q ss_pred             eEEEEeCcc-ccccccccHHHH-HHHHhCCcEEEEecc---ccCCCCCCCCCCCCCCCcEEEEccccc-----CCCCCCc
Q 007454          245 GLFVFPLHS-RMTGARYPYLWM-RIAQENDWHILIDAC---ALGPKDMDSFGLSLVRPDFLICSFYQI-----FGENPSG  314 (603)
Q Consensus       245 ~Lv~~~~~S-n~TG~~~pl~~i-~~a~e~g~~vlvDAa---q~~~~~m~~ldls~~~~Dflv~S~hK~-----fG~~P~G  314 (603)
                      .++++..|+ |..|.+.+++.+ .++|++|++++ +++   +++..  -+  -.++++|.++.++..+     ||+ | +
T Consensus       208 ~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll--~~--Pge~GADI~vG~~Q~fGvp~~~GG-P-~  280 (954)
T PRK12566        208 AVFGALLQYPDTHGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVL--TP--PGELGADVVLGSTQRFGVPMGYGG-P-H  280 (954)
T ss_pred             CEEEEEEECCCCceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCC--CC--hhhcCCcEEeeCCCcCCCCCCCCC-C-C
Confidence            366666666 899999999855 68999999855 443   33322  11  2468999999888764     676 4 7


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc-ccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP-EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      .|++-+|+.....+.-.++|=+++ .....-+-       --+++ +++ -+   .|-.|.|+-..-+|-          
T Consensus       281 ag~~a~~~~~~R~~PGRivG~s~D-~~G~~a~~-------l~LqtREQH-IR---ReKAtSNICT~qaL~----------  338 (954)
T PRK12566        281 AAYFACRDDYKRAMPGRIIGVSRD-ARGNTALR-------MALQTREQH-IR---REKANSNICTAQVLL----------  338 (954)
T ss_pred             eeeeeehHHHHhhCCCCccceeec-CCCCeeee-------hhhhHHHHH-hh---hccccchhhHHHHHH----------
Confidence            999999987765554444442221 11110000       00111 011 12   266787776543332          


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV--DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP  471 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~--~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp  471 (603)
                         ++-                        +++=.+  =.-||.+|.+++..++.+|.++|.+.      |   +++...
T Consensus       339 ---A~~------------------------a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~------g---~~~~~~  382 (954)
T PRK12566        339 ---ANI------------------------AGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK------G---IKRLNR  382 (954)
T ss_pred             ---HHH------------------------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc------C---CccccC
Confidence               221                        232211  12378899999999999999999874      3   222211


Q ss_pred             CCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCC
Q 007454          472 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN  551 (603)
Q Consensus       472 ~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  551 (603)
                          ..-..+.+++ +.     ....+...+...||.+|.-                                       
T Consensus       383 ----~fF~~~~v~~-~~-----~~~~~~~~a~~~~~n~r~~---------------------------------------  413 (954)
T PRK12566        383 ----HFFDTLTLEV-GG-----AQAAIIESAEAARINLRIL---------------------------------------  413 (954)
T ss_pred             ----CccceEEEEc-cC-----CHHHHHHHHHHCCCeeEEe---------------------------------------
Confidence                1123555555 21     1234555666678887621                                       


Q ss_pred             CCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          552 LGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       552 ~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                       ..+.|.+||.-.+|.+||+.|++.+.
T Consensus       414 -~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        414 -GRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             -CCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence             12479999999999999999999884

>PRK07678 aminotransferase; Validated

Probab=97.82  E-value=0.0019  Score=71.70  Aligned_cols=231  Identities=15%  Similarity=0.131  Sum_probs=125.6

Q ss_pred             HHHHHhhcCCCCCCee-EEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEE
Q 007454          230 LRKMVVSKGKKKKQRG-LFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFL  300 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~-Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dfl  300 (603)
                      +++.|...  ..+++. +++=|.+. ..|.+.|    ++.+. +|+++|+++++|=+|.+ |..  |--..--...||++
T Consensus       202 l~~~~~~~--~~~~iAAvi~EPiqg-~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDiv  278 (451)
T PRK07678        202 IDRVMTWE--LSETIAAVIMEPIIT-GGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDII  278 (451)
T ss_pred             HHHHHHhc--CCCceEEEEEccccC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEE
Confidence            55666421  112444 44445554 4788776    33443 68999999999987743 321  10111112369999


Q ss_pred             EEcccccCCC--CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          301 ICSFYQIFGE--NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       301 v~S~hK~fG~--~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      ++  =|-+|+  -|  +|++.+++++++.+.+....|.+                               .-.+|.+- .
T Consensus       279 t~--gK~lggG~~P--i~av~~~~~i~~~~~~~~~~~~~-------------------------------~h~~T~~g-n  322 (451)
T PRK07678        279 TM--AKGITSAYLP--LSATAVKKEIYEAFKGKGEYEHF-------------------------------RHVNTFGG-N  322 (451)
T ss_pred             Ee--ecccccCCcc--eeEEEEcHHHHHHHhccCccccc-------------------------------ccCCCCCc-C
Confidence            77  475542  13  89999999887655432100100                               00122111 1


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      +++++            +++                         +.|+.+++-   .+.++++.+.++|.++|.++.. 
T Consensus       323 p~~~a------------aa~-------------------------a~l~~l~~~---~~~~~~~~~g~~l~~~l~~~~~-  361 (451)
T PRK07678        323 PAACA------------LAL-------------------------KNLEIMENE---NLIERSAQLGELLLEQLKEELG-  361 (451)
T ss_pred             HHHHH------------HHH-------------------------HHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHh-
Confidence            12222            011                         467776553   4566788888888888865421 


Q ss_pred             CCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc--cCH---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          459 NTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK--IEP---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       459 ~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~--v~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                         ..|.| .+-      .+|.++.+.+.......  .+.   ..+...+-++||.++..   .+.              
T Consensus       362 ---~~~~v~~vr------g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~---g~~--------------  415 (451)
T PRK07678        362 ---EHPLVGDIR------GKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKN---GDT--------------  415 (451)
T ss_pred             ---cCCCEEEEE------eeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeec---Ccc--------------
Confidence               11222 222      35778888774321111  111   22333344578877521   000              


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                       ......++|+++.+..|.+||+++++.+.+.|++
T Consensus       416 -----------------v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~  449 (451)
T PRK07678        416 -----------------VAGYNNVLTLSPPLVISSEEIAFIVGTLKTALER  449 (451)
T ss_pred             -----------------ccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence                             0011248999999999999999999999988753

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.82  E-value=0.015  Score=64.73  Aligned_cols=227  Identities=14%  Similarity=0.156  Sum_probs=125.0

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEE-eCccccccccc-cHHHHH----HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARY-PYLWMR----IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~-pl~~i~----~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+++++.|...   ..+..-|.+ |.+....|.+. |-.++.    +|+++|+++++|=+|.+ |..  |--.+.-...|
T Consensus       210 ~~~l~~~l~~~---~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~P  286 (460)
T PRK06916        210 LEELEELLKEK---HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTP  286 (460)
T ss_pred             HHHHHHHHHhC---CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCC
Confidence            44566666521   124444444 53445568765 444442    58999999999987653 221  11111223469


Q ss_pred             cEEEEcccccCC-CC-CCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIFG-EN-PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~fG-~~-P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |++++  =|-+| +. |  +|++.+++++++.+.+..-+..                            .+  +-.+|.+
T Consensus       287 Div~~--gK~l~gG~~P--i~av~~~~ei~~~~~~~~~~~~----------------------------~~--~~~~T~~  332 (460)
T PRK06916        287 DIMTA--GKGLTGGYLP--IAITVTTDEIYNAFYGDYEEQK----------------------------TF--FHGHSYT  332 (460)
T ss_pred             Ceeee--ehhhhcCccc--cceeeecHHHHHHhhccccccC----------------------------cc--ccCCCCC
Confidence            99876  47443 21 2  8999999887654432110000                            00  0112211


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      - .+++++            +++                         +.|+.+++-   .+.++++.+.++|.+.|.+|
T Consensus       333 g-npl~~a------------aa~-------------------------a~l~~l~~~---~l~~~~~~~g~~l~~~l~~l  371 (460)
T PRK06916        333 G-NPLGCA------------VAL-------------------------ANLELYEKT---NLIEQVARKTEYVATQLEDL  371 (460)
T ss_pred             C-CHHHHH------------HHH-------------------------HHHHHHHhc---cHHHHHHHHHHHHHHHHHHh
Confidence            0 122222            011                         467766553   35678889999999999887


Q ss_pred             CCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          456 QHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       456 ~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      ..     .|.| .+-      -+|-++.+.+.+.+.  +...     ...+...+-++||.++.                
T Consensus       372 ~~-----~~~v~~vr------G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~----------------  424 (460)
T PRK06916        372 FA-----LKHVGDIR------QLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRP----------------  424 (460)
T ss_pred             hc-----CCCeEEee------cCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEe----------------
Confidence            41     1222 222      356677777753221  1100     11233333446666531                


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                              .+ .++|+.+.+-.|.+||+++++.|.+.|.+
T Consensus       425 ------------------------~g-~~l~~~Ppl~it~~~id~~~~~l~~~l~~  455 (460)
T PRK06916        425 ------------------------LG-NTIVFMPPLASTIDELDEMLRILYKAISD  455 (460)
T ss_pred             ------------------------cC-CEEEEeCCcccCHHHHHHHHHHHHHHHHh
Confidence                                    11 38999999999999999999999998864

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=97.81  E-value=0.012  Score=68.35  Aligned_cols=146  Identities=12%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec---------------------cCchHHHHHHHHHHcCCEEEEEeccCCc----cc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY---------------------ESEAVEAMIRTSEKRGARVMSAEFSWPR----LR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~---------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~----g~  224 (603)
                      ..+.+|-+.+|+.+|++..=|+-.=                     .-|++.++...+.-.|++.+++...+..    |.
T Consensus       195 G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~g~  274 (713)
T PRK15399        195 GPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGILGG  274 (713)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCcCC
Confidence            5667888999999999755442210                     1122333334455578898888765421    23


Q ss_pred             cCH-----HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEE-EEeccccCCCC-CCC--CCCCC
Q 007454          225 INS-----EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHI-LIDACALGPKD-MDS--FGLSL  294 (603)
Q Consensus       225 i~~-----~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~v-lvDAaq~~~~~-m~~--ldls~  294 (603)
                      |+.     +.++++|...... ++.+.++++.- +--|+.+++++|. .+   |+.+ |+|-|..+ |- ..+  -+.+.
T Consensus       275 I~~~~~~~e~I~~~i~~~p~~-~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhga-h~~F~p~~~~~sa  348 (713)
T PRK15399        275 IPRREFTRDSIEEKVAATTQA-QWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVP-YTHFHPIYQGKSG  348 (713)
T ss_pred             CChhhccHHHHHHHHHhCCCc-CCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchh-hhhcCcccCCcCh
Confidence            455     8889998753221 22345555544 5689999999775 55   6666 79976332 10 011  11122


Q ss_pred             C----CCcEE---EEcccccCCCCCCceEEEEEeC
Q 007454          295 V----RPDFL---ICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       295 ~----~~Dfl---v~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +    ++|.+   +-|.||..++ -+....|-||.
T Consensus       349 m~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~  382 (713)
T PRK15399        349 MSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKG  382 (713)
T ss_pred             hhCCCCCCeeeeeeeehhccccc-cchheeeeecC
Confidence            1    45666   9999999886 77777777754

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=97.81  E-value=0.01  Score=62.83  Aligned_cols=180  Identities=17%  Similarity=0.164  Sum_probs=105.9

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH--HHHHHHHHHHHHHHcCCCCCcE--
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE--SGLESAMKKRIMDFLNISENDY--  190 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~--~~~~~~aR~~Ia~~lna~~~e~--  190 (603)
                      |+-...+.+|+++.-..+++-       |++          +-|.... ||+..  .+++.-+++|.++.|+.+|+.+  
T Consensus        47 aSENFts~aVmeAlGS~ltNK-------YSE----------GyPG~RY-YGGne~ID~iE~LCq~RALeaF~ldp~kWGV  108 (477)
T KOG2467|consen   47 ASENFTSRAVMEALGSCLTNK-------YSE----------GYPGARY-YGGNEYIDQIELLCQKRALEAFGLDPEKWGV  108 (477)
T ss_pred             ecccchHHHHHHHHhHHhhcc-------ccc----------CCCcccc-cCcchHHHHHHHHHHHHHHHHhCCCHHHCce
Confidence            444456889999977665532       211          3343333 45443  5677778999999999999866  


Q ss_pred             -EEecc-CchHHHHHHHHHH----------------------cCCEEEE--E-------eccCCccccCHHHHHHHHhhc
Q 007454          191 -VYDYE-SEAVEAMIRTSEK----------------------RGARVMS--A-------EFSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       191 -vf~~e-s~sV~~~~~~a~~----------------------~Ga~V~~--~-------~~~~~~g~i~~~~L~~~l~~~  237 (603)
                       |-.+. |.+-..+-...-+                      .+-+|.-  +       .++..+|-||.+.|++.-.. 
T Consensus       109 NVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~-  187 (477)
T KOG2467|consen  109 NVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL-  187 (477)
T ss_pred             eeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh-
Confidence             11111 1111110000000                      0111111  1       13445789999999986542 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC---C--CCCCCCCCCCCcEEEEcccccCCCC
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK---D--MDSFGLSLVRPDFLICSFYQIFGEN  311 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~---~--m~~ldls~~~~Dflv~S~hK~fG~~  311 (603)
                          =+++|++.-.-+  --..+||..++ +|.+.|+++++|.++.-|-   .  ..|++    .+|.++.+-||-+-+ 
T Consensus       188 ----frPk~iiaG~Sa--Y~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe----y~DiVTTTTHKsLRG-  256 (477)
T KOG2467|consen  188 ----FRPKLIIAGTSA--YSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE----YCDIVTTTTHKSLRG-  256 (477)
T ss_pred             ----cCCcEEEecccc--chhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc----ccceeeccccccccC-
Confidence                145666654332  12357787775 7899999999996543221   0  02554    489999999997755 


Q ss_pred             CCceEEEEEeCCCC
Q 007454          312 PSGFGCLFVKKSTV  325 (603)
Q Consensus       312 P~G~G~L~vkk~~~  325 (603)
                      |. -|.+|.||.+.
T Consensus       257 PR-g~mIFyRkGvk  269 (477)
T KOG2467|consen  257 PR-GAMIFYRKGVK  269 (477)
T ss_pred             Cc-ceeEEEeccCC
Confidence            76 47778888875

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=97.81  E-value=0.0029  Score=69.81  Aligned_cols=226  Identities=13%  Similarity=0.094  Sum_probs=126.8

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-cHHH---H-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-PYLW---M-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-pl~~---i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .++|++.+.......+-..+++-|.++| +|.+. |-++   + ++|+++|+++++|=++.+ +..  |-..+.....||
T Consensus       183 ~~~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pD  261 (425)
T PRK07495        183 LAALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAAD  261 (425)
T ss_pred             HHHHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCC
Confidence            3445666642101112235666677776 88654 4443   3 368999999999987652 221  111222234688


Q ss_pred             EEEEcccccCCC-CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          299 FLICSFYQIFGE-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       299 flv~S~hK~fG~-~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++++  =|.+|. -|  +|++..++++++.+.+...+++          |                        +..++.
T Consensus       262 i~tl--sK~l~~G~p--igav~~~~~i~~~~~~~~~~~T----------~------------------------~~~pl~  303 (425)
T PRK07495        262 LTTM--AKGLAGGFP--LAAVTGRAEIMDAPGPGGLGGT----------Y------------------------GGNPLG  303 (425)
T ss_pred             EEee--hhhhcCCcc--ceEEEEcHHHHhccCCCCcCCC----------C------------------------CCCHHH
Confidence            7665  576551 12  7889998887665543211110          0                        111111


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..+++                                         ++++++++   +.+.++++.+.++|.++|+++..
T Consensus       304 ~aaa~-----------------------------------------a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~  339 (425)
T PRK07495        304 IAAAH-----------------------------------------AVLDVIEE---EDLCERANQLGNRLKQRLASLRE  339 (425)
T ss_pred             HHHHH-----------------------------------------HHHHHHHh---chHHHHHHHHHHHHHHHHHHHHh
Confidence            11111                                         46777654   35677888888999988887642


Q ss_pred             CCCCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCH---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          458 PNTEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEP---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       458 ~~~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      .    .|. ..|.|      +|-.+.+.+.+.+...-..   ..+.+.+-++|+.++..                     
T Consensus       340 ~----~~~i~~vrG------~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~---------------------  388 (425)
T PRK07495        340 T----VPEIADIRG------PGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTC---------------------  388 (425)
T ss_pred             h----CCCeeeeec------CceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeec---------------------
Confidence            1    122 22333      3667777775432110011   22334444577776421                     


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                       .....+||+.+-+.-|.+|||.+++.|.+.|.+
T Consensus       389 -----------------g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~  421 (425)
T PRK07495        389 -----------------GVHGNVIRFLAPITIQDDVFAEALDILEASILE  421 (425)
T ss_pred             -----------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence                             001158999999999999999999999988754

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=97.78  E-value=0.0039  Score=72.37  Aligned_cols=146  Identities=12%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec---------------------cCchHHHHHHHHHHcCCEEEEEeccCCc----cc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY---------------------ESEAVEAMIRTSEKRGARVMSAEFSWPR----LR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~---------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~----g~  224 (603)
                      ..+.+|-+.+|+.+|++..=++-.=                     .-|++.++...+.-.|++.++++..+..    +.
T Consensus       195 G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~g~  274 (714)
T PRK15400        195 GPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGG  274 (714)
T ss_pred             hHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCccC
Confidence            5677899999999999755442210                     1122333334455678999998766522    23


Q ss_pred             cC-----HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCC-CCC-C-CCCC-
Q 007454          225 IN-----SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKD-MDS-F-GLSL-  294 (603)
Q Consensus       225 i~-----~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~-m~~-l-dls~-  294 (603)
                      |+     .+.+++.|...... ++...++++. ++--|+.+++++|. .++.++  +|+|-|..+ +- ..+ + +.+. 
T Consensus       275 I~~~~~~~e~i~~~i~~~p~a-k~p~~~vit~-pTYdG~~yd~~~I~~~~~~~~--ilvDEAwga-h~~F~p~~~~~sam  349 (714)
T PRK15400        275 IPQSEFQHATIAKRVKETPNA-TWPVHAVITN-STYDGLLYNTDFIKKTLDVKS--IHFDSAWVP-YTNFSPIYEGKCGM  349 (714)
T ss_pred             CCccccCHHHHHHHHHhCccc-cCccEEEEEC-CCCccEecCHHHHHHHhCCCC--EEEEccchh-hhccCcccCCcChh
Confidence            45     78999999753221 1222455544 36689999999774 788777  689976322 20 001 1 1111 


Q ss_pred             -CCC---c--EEEEcccccCCCCCCceEEEEEe
Q 007454          295 -VRP---D--FLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       295 -~~~---D--flv~S~hK~fG~~P~G~G~L~vk  321 (603)
                       .+.   |  |++-|.||..++ -+....|-||
T Consensus       350 ~~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvk  381 (714)
T PRK15400        350 SGGRVEGKVIYETQSTHKLLAA-FSQASMIHVK  381 (714)
T ss_pred             hcCCCCCCceEEEEchhhcccc-hhHHhHHHHc
Confidence             234   5  999999999875 5555555443

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=97.78  E-value=0.00082  Score=74.08  Aligned_cols=98  Identities=9%  Similarity=0.074  Sum_probs=66.8

Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccH---HHH-HHHHhCCcEEEEeccccCCCC-C--------
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPY---LWM-RIAQENDWHILIDACALGPKD-M--------  287 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~~-m--------  287 (603)
                      ++.+|.++|++.|..+  ..++++|+.+....|.. |...|+   +.+ ++|+++|+.|++|||++.+-. +        
T Consensus       158 tgnlD~d~Le~~I~~~--~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y  235 (460)
T PRK13237        158 KGNVDLDKLQALIDEV--GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGY  235 (460)
T ss_pred             CCCcCHHHHHHHhccc--cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccccc
Confidence            6889999999999742  12467777777777888 566654   444 478999999999999887721 0        


Q ss_pred             CCCCCC------CCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          288 DSFGLS------LVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       288 ~~ldls------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ..-.+.      -...|.+++|+||-++. |. =|++..+++
T Consensus       236 ~~~~i~ei~~e~~s~aD~~t~S~~K~~~~-~~-GG~i~t~D~  275 (460)
T PRK13237        236 QDKSIKEIVHEMFSYADGCTMSGKKDCLV-NI-GGFLAMNDE  275 (460)
T ss_pred             CCCcHhHHhhhccCcCcEEEEeCCCCCCC-CC-ceEEEECCH
Confidence            011111      12479999999998875 43 255555543

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=97.77  E-value=0.0019  Score=70.17  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=75.1

Q ss_pred             HHHHHcCCEEEEEec-cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvD  278 (603)
                      ..++..|++++.++. +..+..++.++|++.+...   .+++.++++|.-+|.||..++-+.    ++.|++++++++.|
T Consensus       135 ~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D  211 (396)
T PRK09257        135 AIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA---PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLD  211 (396)
T ss_pred             HHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence            345667999998886 2223578999999888631   124688888999999999999873    24578999999999


Q ss_pred             ccc-cCCCC----CCCC-CCCCCC-CcEEEEcccccCCCCCCc--eEEEEE
Q 007454          279 ACA-LGPKD----MDSF-GLSLVR-PDFLICSFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       279 Aaq-~~~~~----m~~l-dls~~~-~Dflv~S~hK~fG~~P~G--~G~L~v  320 (603)
                      -+- -...+    ..++ .+.... -=+++.||=|.||  |.|  +|.+++
T Consensus       212 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~--~~GlRiG~~~~  260 (396)
T PRK09257        212 IAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFG--LYGERVGALSV  260 (396)
T ss_pred             ccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCc--cccccceeEEE
Confidence            752 11110    0010 011111 1267899999999  656  677764

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=97.74  E-value=0.0013  Score=71.93  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=47.9

Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc---ccCCCCCCCCCCCCCCCcEEEEccccc------CCCCC
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC---ALGPKDMDSFGLSLVRPDFLICSFYQI------FGENP  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa---q~~~~~m~~ldls~~~~Dflv~S~hK~------fG~~P  312 (603)
                      ++.-|.+..- |..|.+-+++.| .++|++|+.+++ ++   ++++.    -.-.++|+|.++.+ ||-      ||+ |
T Consensus       197 ~~a~v~vq~P-n~~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l----~~Pge~GADI~vg~-~Q~fg~p~~~GG-P  268 (429)
T PF02347_consen  197 DTAAVMVQNP-NTFGVFEDIKEIADIAHAAGALVIV-GADPNALGGL----KSPGEYGADIVVGE-HQTFGIPMGFGG-P  268 (429)
T ss_dssp             TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC------GGGGT-SEEEEC-CTTTT---CCC--S
T ss_pred             CeEEEEeecC-CCCceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCc----CChhhcCccEEeeC-CCCCcccCCCCC-C
Confidence            5666666554 579999999866 589999999877 43   33332    11236799999666 774      455 3


Q ss_pred             CceEEEEEeCCCCcCcCCCCCC
Q 007454          313 SGFGCLFVKKSTVPILVDNTSS  334 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~g  334 (603)
                       |.|++-+|+.....+.-.++|
T Consensus       269 -~~G~~a~~~~l~r~lPGRiVG  289 (429)
T PF02347_consen  269 -GAGFFAVREDLVRQLPGRIVG  289 (429)
T ss_dssp             ---EEEEE-GGGGGGS-S-EEE
T ss_pred             -CeeeEEEhhhhhhhCCCceec
Confidence             788999999977666544443

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=97.73  E-value=0.0026  Score=69.74  Aligned_cols=106  Identities=15%  Similarity=-0.004  Sum_probs=67.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHh
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLAD  503 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad  503 (603)
                      +.|+.+++   +.+.++++.+.++|.++|.+|...    .+.+   +.-  ..+|.++.+.+.....+ . ...+.+.+.
T Consensus       298 a~L~~~~~---~~l~~~~~~~g~~l~~~l~~l~~~----~~~i---~~v--rg~Gl~~~i~~~~~~~~-~-a~~i~~~l~  363 (408)
T PRK04612        298 VALRKLAS---PQIAANVARQSAALRAGLEALNAE----FGVF---AQV--RGRGLMLGAVLAPAHAG-Q-AGAILDLAA  363 (408)
T ss_pred             HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhh----CCCe---eee--eccceEEEEEecCchhh-H-HHHHHHHHH
Confidence            46666654   356678888888998888876421    1212   111  23577777777431111 1 123444455


Q ss_pred             cCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          504 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       504 ~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++||.+..                                        .+..+||+.+.+.-|.+||+++++.+.+.|.+
T Consensus       364 ~~Gvlv~~----------------------------------------~g~~~lRl~Ppl~it~eeid~~l~~l~~~l~~  403 (408)
T PRK04612        364 EHGLLLLQ----------------------------------------AGPDVLRFVPALNLTDAELADGLARLRLALAD  403 (408)
T ss_pred             HCCeEEee----------------------------------------CCCCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence            67877631                                        01158999999999999999999999988864

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.72  E-value=0.031  Score=62.53  Aligned_cols=95  Identities=14%  Similarity=0.222  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEE-eCccccccccccHH-HH----HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYL-WM----RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~pl~-~i----~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+.+++.+...   ..++.-|.+ |.+....|.+.|-. ++    ++|+++|+.+++|=+|.+ |..  |--.+.-...|
T Consensus       223 ~~~l~~~~~~~---~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~P  299 (472)
T PRK08742        223 ADALQALFEQS---PGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMP  299 (472)
T ss_pred             HHHHHHHHHhC---CCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCC
Confidence            35566666421   124554444 43455678866533 43    268999999999987763 321  11122223569


Q ss_pred             cEEEEcccccCCC-C-CCceEEEEEeCCCCcCc
Q 007454          298 DFLICSFYQIFGE-N-PSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       298 Dflv~S~hK~fG~-~-P~G~G~L~vkk~~~~~L  328 (603)
                      |+++++  |-+|+ . |  +|++++++++++.+
T Consensus       300 Div~~g--Kgl~gG~~P--laav~~~~ei~~~~  328 (472)
T PRK08742        300 DLLCLS--KGLTGGFLP--LSAVLATQQLYDAF  328 (472)
T ss_pred             CEEEEc--ccccCCCCC--cceeeccHHHHHHh
Confidence            999984  75542 1 3  79999998876544

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=97.70  E-value=0.0034  Score=69.31  Aligned_cols=75  Identities=13%  Similarity=0.082  Sum_probs=46.0

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Df  299 (603)
                      +++++.+...   ..++..|.+.-+....|.+.|    ++.+ ++|+++|+++++|-+|. +|..  |-..+.....||+
T Consensus       206 ~~~~~~~~~~---~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi  282 (431)
T TIGR03251       206 RQARAAFAER---PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDI  282 (431)
T ss_pred             HHHHHHHHhC---CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCE
Confidence            3444555421   235777777666677888753    2334 36899999999999877 3431  0012222357999


Q ss_pred             EEEccc
Q 007454          300 LICSFY  305 (603)
Q Consensus       300 lv~S~h  305 (603)
                      ++++-.
T Consensus       283 ~~~gK~  288 (431)
T TIGR03251       283 VAFGKK  288 (431)
T ss_pred             EEeccc
Confidence            987544

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=97.69  E-value=0.0017  Score=71.77  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=61.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HH-HHHHhCCcEEEEeccccCC-C-CCCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WM-RIAQENDWHILIDACALGP-K-DMDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i-~~a~e~g~~vlvDAaq~~~-~-~m~~ldls~~~~D  298 (603)
                      +.++|++.|...   .++...|++-.+....|.+.|..    .+ ++|+++|+.+++|=++.+- . .|.....-...||
T Consensus       187 d~~~l~~~l~~~---~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PD  263 (433)
T PRK00615        187 DFQIFQTVMNSL---GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPD  263 (433)
T ss_pred             CHHHHHHHHHhc---CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCC
Confidence            467888888632   13455666655555679888854    44 4789999999999887421 1 0111111224699


Q ss_pred             EEEEcccccCCC-CCCceEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGE-NPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~-~P~G~G~L~vkk~~~~~L~  329 (603)
                      ++++  =|.+|+ .|  +|++..++++++.+.
T Consensus       264 i~~~--gK~lggG~p--~~av~~~~~i~~~~~  291 (433)
T PRK00615        264 ITVY--GKILGGGLP--AAAVVAHKSIMDHLA  291 (433)
T ss_pred             eEEE--cccccCCcc--eeeeeecHHHHhhhc
Confidence            9874  687662 12  788888988876554

>PRK07481 hypothetical protein; Provisional

Probab=97.69  E-value=0.0057  Score=67.97  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCCC-C-C
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGE-N-P  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG~-~-P  312 (603)
                      ++.-|.+--+....|.+.|    ++.+. +|+++|+++++|=+|.+ |..  |--...-...||+++++  |.+|+ . |
T Consensus       213 ~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--Kgl~gG~~P  290 (449)
T PRK07481        213 TIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLA--KGITSGYVP  290 (449)
T ss_pred             cEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEe--ecccCCCcC
Confidence            4555555555666788776    34443 68999999999977653 221  11112223469998884  75542 0 2


Q ss_pred             CceEEEEEeCCCCcCcC
Q 007454          313 SGFGCLFVKKSTVPILV  329 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~  329 (603)
                        +|++++++++++.+.
T Consensus       291 --i~av~~~~~i~~~~~  305 (449)
T PRK07481        291 --LGATMVNARIADAFE  305 (449)
T ss_pred             --ceEEEEcHHHHHHHh
Confidence              799999988776554

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=97.68  E-value=0.0088  Score=66.77  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhcCCCCCCee-EEEEeCcccccccccc-HHHH---H-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRG-LFVFPLHSRMTGARYP-YLWM---R-IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~-Lv~~~~~Sn~TG~~~p-l~~i---~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+.+++.|........++. +++=|.+ ..-|.+.| -.++   . +|+++|+++++|=+|.+ |..  |--.+.-...|
T Consensus       215 ~~~l~~~i~~~~~~~~~iAAvI~EPiq-g~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~P  293 (464)
T PRK06938        215 LHYLENLLDDPESGVVLPAAVILEVVQ-GEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIP  293 (464)
T ss_pred             HHHHHHHHHhhccCCCceEEEEEcccc-CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCC
Confidence            4567777753111112344 4444544 44587665 3343   3 68999999999987653 221  11111123469


Q ss_pred             cEEEEcccccCC-CCCCceEEEEEeCCC
Q 007454          298 DFLICSFYQIFG-ENPSGFGCLFVKKST  324 (603)
Q Consensus       298 Dflv~S~hK~fG-~~P~G~G~L~vkk~~  324 (603)
                      |.++++  |.+| +.|  +|+++.+++.
T Consensus       294 Div~~g--KglggG~P--lsAv~~~~~~  317 (464)
T PRK06938        294 DVVVLS--KAIGGSLP--LAVVVYREWL  317 (464)
T ss_pred             CEEEee--ccccCCCc--eEEEeehhHh
Confidence            999985  6433 223  8999988764

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=97.65  E-value=0.0059  Score=67.14  Aligned_cols=99  Identities=11%  Similarity=0.068  Sum_probs=59.5

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .+.+++.+... ...++...|.+--+...+|.+.|    ++.+ ++|+++|+++++|=++.+ +..  +-.++-....||
T Consensus       182 ~~~~~~~~~~~-~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pD  260 (420)
T TIGR00700       182 LAAARAIFVID-VGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPD  260 (420)
T ss_pred             HHHHHHHHHhh-cCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCC
Confidence            34566665311 01235666666556667899887    5544 478999999999976542 221  111222234699


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      .++  +=|-+|. --=+|++++++++++.+.
T Consensus       261 i~~--lsK~l~~-G~pig~v~~~~~i~~~~~  288 (420)
T TIGR00700       261 LIT--TAKSLAD-GLPLSGVTGRAEIMDAPA  288 (420)
T ss_pred             EEE--eeccccC-CcceEEEEecHHHHhhcC
Confidence            765  5686651 112799999888765554

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=97.62  E-value=0.0022  Score=70.56  Aligned_cols=111  Identities=14%  Similarity=0.079  Sum_probs=72.9

Q ss_pred             HHcCCEEEEEecc---------CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccH---HHH-HHHHhCC
Q 007454          207 EKRGARVMSAEFS---------WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPY---LWM-RIAQEND  272 (603)
Q Consensus       207 ~~~Ga~V~~~~~~---------~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl---~~i-~~a~e~g  272 (603)
                      +..|+.+.-++.+         ..+|.+|+++|++.|..+.  ..++.|+++....|.. |...|+   +.+ ++|+++|
T Consensus       127 e~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~--~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~G  204 (450)
T TIGR02618       127 EKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVG--ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHG  204 (450)
T ss_pred             HhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhcccc--CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcC
Confidence            4567765555322         1258899999999997421  2245677777667765 788775   434 3689999


Q ss_pred             cEEEEeccccCCCCCC-------CCCCCC--------CCCcEEEEcccccCCCCCCceEEEEE-eC
Q 007454          273 WHILIDACALGPKDMD-------SFGLSL--------VRPDFLICSFYQIFGENPSGFGCLFV-KK  322 (603)
Q Consensus       273 ~~vlvDAaq~~~~~m~-------~ldls~--------~~~Dflv~S~hK~fG~~P~G~G~L~v-kk  322 (603)
                      +.|++|||++.+-...       -.|.+.        ..+|.+++|+||-+|. |.  |.+++ ++
T Consensus       205 l~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~-~~--GG~l~~~d  267 (450)
T TIGR02618       205 IKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLV-NI--GGFLCMND  267 (450)
T ss_pred             CEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCC-CC--ceEEEeCC
Confidence            9999999988742100       112111        2589999999998887 54  55555 44

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.58  E-value=0.0069  Score=66.85  Aligned_cols=224  Identities=13%  Similarity=0.113  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeC-cccccccccc-HHH---H-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP-YLW---M-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~-~Sn~TG~~~p-l~~---i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+++++++...   .++...|.+-- .+..-|.+.| ..+   + ++|+++|+.+++|=++.+ |..  |-..+.....|
T Consensus       194 ~~~l~~~l~~~---~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~p  270 (427)
T TIGR00508       194 ITPLAKLMELH---SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVP  270 (427)
T ss_pred             HHHHHHHHHhc---CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCC
Confidence            45666777531   12455555544 3666676553 333   3 368999999999987643 221  10111223479


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |++++  =|.+|+--.-++++.+++++++.+..... +..                               .-.+|.. .
T Consensus       271 Di~~~--gK~l~gG~~p~~a~~~~~~~~~~~~~~~~-~~~-------------------------------~~~~T~~-g  315 (427)
T TIGR00508       271 DILCV--GKALTGGYMTLSATVTTDKVAQTISSGEA-GCF-------------------------------MHGPTFM-G  315 (427)
T ss_pred             CEEEe--chhhhcCcccceEEEEcHHHHHHHhcCCC-Ccc-------------------------------ccCCCCC-c
Confidence            98874  67654200014778888777655542100 000                               0011110 0


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++++            ++                         ++|+.+.+-   ...++++.+.++|.++|+++..
T Consensus       316 ~p~~~aa------------a~-------------------------a~l~~l~~~---~~~~~~~~~~~~l~~~L~~l~~  355 (427)
T TIGR00508       316 NPLACAV------------AE-------------------------ASLAILLEG---EWQKQVSAIENQLKRELSPLRK  355 (427)
T ss_pred             CHHHHHH------------HH-------------------------HHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhc
Confidence            1222220            11                         477776653   3457888899999999988741


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                           .|.+   +. . ..+|.++.+.+.+..    .+..+.+.+.++||.++..                         
T Consensus       356 -----~~~i---~~-v-rg~G~~~~i~~~~~~----~~~~~~~~l~~~Gv~~~~~-------------------------  396 (427)
T TIGR00508       356 -----NPVV---KD-V-RVLGAIGVVEMYKPV----NVEELQKKFVEQGVWIRPF-------------------------  396 (427)
T ss_pred             -----CCCE---Ee-E-eccccEEEEEECCcc----CHHHHHHHHHHCCeEEEec-------------------------
Confidence                 1212   11 1 235889999886421    2334444455678776410                         


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      ..++|+++....|.+|||++++.+.+.|.+
T Consensus       397 ----------------~~~l~~~ppl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       397 ----------------GKLIYVMPPYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             ----------------CCEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence                            137999999999999999999999998754

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=97.57  E-value=0.0043  Score=69.15  Aligned_cols=102  Identities=12%  Similarity=0.153  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc-eEE-EeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA-LVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL  501 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p-lv~-Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~L  501 (603)
                      +.|+.+++   +.+..+++.+.++|.++|.++..    ..| .|. +-|    ..+|.++.+.+.+.  + + ...+.+.
T Consensus       360 a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~----~~~~~i~~vRg----~G~Glm~gie~~~~--~-~-~~~i~~~  424 (464)
T TIGR00699       360 EIIQEIKR---KDLLENVAHVGDYLYTGLEDLQK----KYPEFIQNLRG----KGRGTFIAWDTPDE--A-K-RDKLLKK  424 (464)
T ss_pred             HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH----hCCCceeeecc----cCeEEEEEEecCCH--H-H-HHHHHHH
Confidence            46666654   34556777777788888877631    012 221 111    13688888887542  1 1 1233344


Q ss_pred             HhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          502 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       502 ad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      +-++||.++..                                        +..+||+++.+..|.+||+.+++.|.+.
T Consensus       425 ~~~~Gvl~~~~----------------------------------------g~~~ir~~Ppl~it~~eid~~~~~l~~~  463 (464)
T TIGR00699       425 ARNNGVNIGGC----------------------------------------GVKAIRLRPMLVFQKHHADIFLEIISKI  463 (464)
T ss_pred             HHHCCcEEecC----------------------------------------CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            44568876421                                        1148999999999999999999998765

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=97.53  E-value=0.016  Score=61.94  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             HHHcCCEEEEEe-ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HHHH---HHhCCcEEEEecc
Q 007454          206 SEKRGARVMSAE-FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRI---AQENDWHILIDAC  280 (603)
Q Consensus       206 a~~~Ga~V~~~~-~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i~~---a~e~g~~vlvDAa  280 (603)
                      .+..|.+|..-| ++..+..++.+.+-..|..-   ..+.-++-=..+.|.||...+.+ |..+   .+++||..++|-|
T Consensus       137 f~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a---~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~A  213 (396)
T COG1448         137 FEAAGLEVETYPYYDAETKGLDFDGMLADLKTA---PEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIA  213 (396)
T ss_pred             HHhcCCceeeeeccccccccccHHHHHHHHHhC---CCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehh
Confidence            345688886544 45455668888777777631   12333333345569999999997 8764   5899999999987


Q ss_pred             -ccCCCCCCCCCCCC--------CCC-cEEEEcccccCCCCCCceEEEEEeC
Q 007454          281 -ALGPKDMDSFGLSL--------VRP-DFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       281 -q~~~~~m~~ldls~--------~~~-Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                       |-.+.   -++-+.        .++ =|++.||-|-||-+-.-+|++.+--
T Consensus       214 YQGF~~---GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~vva  262 (396)
T COG1448         214 YQGFAD---GLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSVVA  262 (396)
T ss_pred             hhhhcc---chHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEEEe
Confidence             66664   233221        233 5677788898874444589887753

>PRK06149 hypothetical protein; Provisional

Probab=97.53  E-value=0.0071  Score=73.43  Aligned_cols=212  Identities=12%  Similarity=0.135  Sum_probs=121.5

Q ss_pred             CeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC-C-CC--CCCCCcEEEEcccccCCC-C
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS-F-GL--SLVRPDFLICSFYQIFGE-N  311 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~-l-dl--s~~~~Dflv~S~hK~fG~-~  311 (603)
                      ++..|.+--+....|.+.|    ++.+ ++|+++|+.+++|=+|. .|. +.. + ..  ....||.+++  =|-+|. .
T Consensus       744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGR-tG~~~~a~e~~gv~PDivt~--gK~lg~G~  820 (972)
T PRK06149        744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGR-LGHYFWGFEQQGVVPDIITM--AKGMGNGH  820 (972)
T ss_pred             ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCc-cCccchhhhhcCCCCCEEEe--cccccCCe
Confidence            4544444334445688888    6755 47999999999998874 232 122 1 11  1246999866  475552 1


Q ss_pred             CCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccc
Q 007454          312 PSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE  391 (603)
Q Consensus       312 P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~  391 (603)
                      |  +|++++++++++.+.+.   |..         +  .              .   + .| .++...+++         
T Consensus       821 P--l~av~~~~~i~~~~~~~---~~~---------~--s--------------T---~-~g-nP~~~aaal---------  856 (972)
T PRK06149        821 P--LGAVITRREIAEALEAE---GYF---------F--S--------------S---T-GG-SPVSCRIGM---------  856 (972)
T ss_pred             e--eEEEEEcHHHHhhhccC---Ccc---------c--C--------------C---C-CC-CHHHHHHHH---------
Confidence            2  79999999887655431   100         0  0              0   0 11 112222222         


Q ss_pred             cchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCC
Q 007454          392 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP  471 (603)
Q Consensus       392 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp  471 (603)
                                                      +.|+.+++   +.+.++++.+.++|.++|.+|..    ..|+|...  
T Consensus       857 --------------------------------a~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~----~~~~i~~v--  895 (972)
T PRK06149        857 --------------------------------AVLDVLRE---EKLQENARRVGDHLKARLEALAD----RHPLIGAV--  895 (972)
T ss_pred             --------------------------------HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHH----hCCCeEEE--
Confidence                                            46676654   34667788888888888887631    01222111  


Q ss_pred             CCCCCCCCEEEEEEccCCCCc-cC---HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccc
Q 007454          472 KIRFDRGPALAFNVFDWKREK-IE---PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK  547 (603)
Q Consensus       472 ~~~~~rg~ivsFnv~~~~g~~-v~---~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  547 (603)
                         .-+|-.+.+.+....... -.   ...+.+.+-++||.++..                                   
T Consensus       896 ---rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~-----------------------------------  937 (972)
T PRK06149        896 ---HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPT-----------------------------------  937 (972)
T ss_pred             ---eecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeec-----------------------------------
Confidence               135677777774211100 01   112333333467776521                                   


Q ss_pred             cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          548 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       548 ~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                         +....+||+..-+-.|.+||+.+++.|.+.|.+
T Consensus       938 ---g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        938 ---GDHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             ---CCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence               011248999999999999999999999998864

>PRK05965 hypothetical protein; Provisional

Probab=97.48  E-value=0.01  Score=66.09  Aligned_cols=226  Identities=16%  Similarity=0.181  Sum_probs=127.5

Q ss_pred             HHHHHHHhhcCCCCCCee-EEEEeCccccccccccH-HHHH----HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          228 EKLRKMVVSKGKKKKQRG-LFVFPLHSRMTGARYPY-LWMR----IAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~-Lv~~~~~Sn~TG~~~pl-~~i~----~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      ++|++.|....  .++.. +++=| +....|.+.|- .++.    +|+++|+++++|=+|.+ |..  |--.+.-...||
T Consensus       202 ~~l~~~i~~~~--~~~iAAvIvEP-iqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PD  278 (459)
T PRK05965        202 AALRAKVAELG--ADNVAAFFCEP-IQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPD  278 (459)
T ss_pred             HHHHHHHHhcC--CCceEEEEEec-cccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCC
Confidence            46777775311  12344 44445 44557876654 3442    58999999999987664 221  111112234699


Q ss_pred             EEEEcccccCCC-C-CCceEEEEEeCCCCcCcCCCCC-CCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          299 FLICSFYQIFGE-N-PSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       299 flv~S~hK~fG~-~-P~G~G~L~vkk~~~~~L~p~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      .++++  |-+|+ . |  +|++++++++++.+.+..- .|.+                               .-.+|-+
T Consensus       279 iv~~g--Kgl~gG~~P--i~av~~~~~i~~~~~~~~~~~~~~-------------------------------~h~~T~~  323 (459)
T PRK05965        279 LMTVA--KGLTSGYVP--MGAVLMSDHVYQGIADGAGAAAPV-------------------------------GHGYTYS  323 (459)
T ss_pred             eEEec--hhhccCCcc--eeEEEEcHHHHHHHhccccccccc-------------------------------cccCCCC
Confidence            99985  75442 1 2  8999999988755432100 0000                               0011211


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                       ..+++.+            +++                         +.|+.+++   +.+.++++.+.++|.++|.+|
T Consensus       324 -gnpl~~A------------aa~-------------------------a~L~~l~~---~~l~~~~~~~g~~l~~~l~~l  362 (459)
T PRK05965        324 -AHPVSAA------------VGL-------------------------EVLRLYHE---GGLLANGQKAGPRFAAGLDAL  362 (459)
T ss_pred             -CCHHHHH------------HHH-------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHhh
Confidence             1122222            011                         46666654   345667888889999999877


Q ss_pred             CCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCC--CccC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          456 QHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKR--EKIE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       456 ~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g--~~v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      ..     .|.| .|      ..+|.++.+.+.....  +...     ...+...+-++||.++.                
T Consensus       363 ~~-----~~~v~~v------rG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~----------------  415 (459)
T PRK05965        363 RA-----HPLVGDV------RGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRA----------------  415 (459)
T ss_pred             cc-----CCCEEEE------eecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEe----------------
Confidence            41     1222 12      2357777777743211  1101     11233334456777641                


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                              .+..+||+.+.+-.|.+||+++++.|.+.|+.
T Consensus       416 ------------------------~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~  447 (459)
T PRK05965        416 ------------------------FGDGVLGFAPALCCTEGEFDLIFERTRKTLDD  447 (459)
T ss_pred             ------------------------cCCcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence                                    01147999999999999999999999998875

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=97.47  E-value=0.0072  Score=66.61  Aligned_cols=208  Identities=15%  Similarity=0.171  Sum_probs=120.0

Q ss_pred             eEEEEeCcccccccccc-HHHH----HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCC-CCCCce
Q 007454          245 GLFVFPLHSRMTGARYP-YLWM----RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFG-ENPSGF  315 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~p-l~~i----~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG-~~P~G~  315 (603)
                      .+++=|.+....|.+.| -+++    ++|+++|+++++|=+|.+ |..  |.........||++++  =|.+| +.+ =+
T Consensus       203 Avi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~-p~  279 (422)
T PRK05630        203 AIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCV--GKALTGGFM-SF  279 (422)
T ss_pred             EEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeee--echhhcCcc-cc
Confidence            44444543455787655 3343    268999999999987653 221  1111222356999965  58663 211 16


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |++++++++++.+......|..         .                      -.+|.. ..+++++            
T Consensus       280 ~av~~~~~i~~~~~~~~~~~~~---------~----------------------h~~T~~-g~Pla~a------------  315 (422)
T PRK05630        280 AATLCTDKVAQLISTPNGGGAL---------M----------------------HGPTFM-ANPLACA------------  315 (422)
T ss_pred             ceeeccHHHHHHHhccCCCCcc---------c----------------------cCCCCc-CCHHHHH------------
Confidence            8888888876655422100100         0                      011111 1122221            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIR  474 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~~~  474 (603)
                       +.                        .++|+.+++-   ...++++.+.++|.+.|..|..     .|.| .|      
T Consensus       316 -aa------------------------~aaL~~l~~~---~~~~~~~~~g~~l~~~L~~l~~-----~~~v~~v------  356 (422)
T PRK05630        316 -VA------------------------HASLEIIETG---MWRKQVKRIEAELIAGLSPLAH-----LPGVADV------  356 (422)
T ss_pred             -HH------------------------HHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhc-----CCCeeee------
Confidence             01                        1467777653   3355788888888888876531     1222 11      


Q ss_pred             CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                      .-+|.++++.+.+..    ....+...+-++||.++..                                        + 
T Consensus       357 Rg~Gl~~~ie~~~~~----~~~~~~~~~~~~Gl~~~~~----------------------------------------g-  391 (422)
T PRK05630        357 RVLGAIGVVEMEQPV----DMEEATQAAVDHGVWLRPF----------------------------------------G-  391 (422)
T ss_pred             eccccEEEEEECCcc----cHHHHHHHHHHCCeEEEec----------------------------------------C-
Confidence            136889999886531    1233444555678876420                                        1 


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          555 TVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .+||+.+.+-.|.+||+++++.|.+.|.+
T Consensus       392 ~~l~~~PpL~it~~~i~~~~~~l~~al~~  420 (422)
T PRK05630        392 RLVYVMPPYITTSEQIAQICAALAAAVKA  420 (422)
T ss_pred             CEEEEECCccCCHHHHHHHHHHHHHHHhc
Confidence            48999999999999999999999988754

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=97.47  E-value=0.013  Score=64.84  Aligned_cols=209  Identities=13%  Similarity=0.210  Sum_probs=118.1

Q ss_pred             CeeEEEEeCcccccccc-ccHHHH----HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCCC-CCC
Q 007454          243 QRGLFVFPLHSRMTGAR-YPYLWM----RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGE-NPS  313 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~-~pl~~i----~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG~-~P~  313 (603)
                      -..+++-|.+.+- |.+ .|-+.+    ++|+++|+++++|=+|.+ |..  |-...--...||.+++  =|-+|. -| 
T Consensus       207 iaavi~Epi~g~~-G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gK~l~~G~P-  282 (442)
T TIGR00709       207 PAAVILEAIQGEG-GVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVM--SKAVGGGLP-  282 (442)
T ss_pred             eEEEEEccccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEE--cccccCCcc-
Confidence            3566777766654 554 565433    368999999999987653 221  1111112356999885  575542 13 


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                       +|+++++++ ++.+.+...+++          +                       .| .++...+++           
T Consensus       283 -igav~~~~~-~~~~~~~~~~~T----------~-----------------------~g-npla~aaa~-----------  315 (442)
T TIGR00709       283 -LAVLLIAPE-FDAWQPAGHTGT----------F-----------------------RG-NQLAMVTGT-----------  315 (442)
T ss_pred             -cEEEEEchH-HhccCCCcCCCC----------C-----------------------Cc-CHHHHHHHH-----------
Confidence             889998877 333321111110          0                       00 111111111           


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPK  472 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~  472 (603)
                                                    ++|+.+++-   .+.++++.+.++|.++|.+|...    .|.| .+-   
T Consensus       316 ------------------------------a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~~----~~~v~~vr---  355 (442)
T TIGR00709       316 ------------------------------EALNYWKDD---NLAQNAQERGERITSFLDDMIKE----HPCIGNVR---  355 (442)
T ss_pred             ------------------------------HHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHh----CCCeeeee---
Confidence                                          466666543   45568888888888888876311    1222 221   


Q ss_pred             CCCCCCCEEEEEEccCCCCc-----c--C---HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454          473 IRFDRGPALAFNVFDWKREK-----I--E---PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS  542 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~-----v--~---~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (603)
                         .+|-.+++.+.+.....     .  +   ...+...+-++||.++.+                              
T Consensus       356 ---G~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------------------  402 (442)
T TIGR00709       356 ---GRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETG------------------------------  402 (442)
T ss_pred             ---ccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeec------------------------------
Confidence               35777787774321100     0  0   112333334567766421                              


Q ss_pred             ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                              .....+||+.+.+-.|.+||+++++.+.+.|.+
T Consensus       403 --------~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~  435 (442)
T TIGR00709       403 --------GREGEVFRLLCPITIDQEECEEGISRFKQAVEE  435 (442)
T ss_pred             --------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                    011258999999999999999999999998875

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06148 hypothetical protein; Provisional

Probab=97.46  E-value=0.014  Score=71.16  Aligned_cols=211  Identities=16%  Similarity=0.197  Sum_probs=121.2

Q ss_pred             CeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC---CCCCCCCCCCCcEEEEcccccCC-CCC
Q 007454          243 QRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD---MDSFGLSLVRPDFLICSFYQIFG-ENP  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~---m~~ldls~~~~Dflv~S~hK~fG-~~P  312 (603)
                      .+.-|.+--+...-|.+.|    ++.+ ++|+++|+.+++|=+|.+ |..   |--.......||++++  =|.+| +.|
T Consensus       784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~--gK~lggG~P  861 (1013)
T PRK06148        784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTM--GKPIGNGHP  861 (1013)
T ss_pred             ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeee--cccccCCcc
Confidence            3444444334445688777    5545 478999999999988753 320   1111122346999887  47543 223


Q ss_pred             CceEEEEEeCCCCcCcCCCC-CCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccc
Q 007454          313 SGFGCLFVKKSTVPILVDNT-SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE  391 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~-~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~  391 (603)
                        +|+++.++++++.+.+.. ++++          +                        |-.++.-.+++         
T Consensus       862 --lgav~~~~ei~~~~~~g~~~~~T----------f------------------------~gnpla~aaa~---------  896 (1013)
T PRK06148        862 --MGAVVTTREIADSFDNGMEYFNT----------F------------------------GGNPVSCAIGL---------  896 (1013)
T ss_pred             --eEEEEEcHHHHhhccCCCccccC----------C------------------------CCCHHHHHHHH---------
Confidence              899999998876554310 0010          0                        00112212221         


Q ss_pred             cchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeC
Q 007454          392 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYG  470 (603)
Q Consensus       392 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iyg  470 (603)
                                                      +.|+.+++   +.+.++++.+.++|.++|.+|...    .|+| .|-|
T Consensus       897 --------------------------------a~L~~i~~---e~l~~~~~~~G~~l~~~L~~l~~~----~~~i~~VrG  937 (1013)
T PRK06148        897 --------------------------------AVLDIIED---EDLQRNALEIGNYLLAGLRELQDR----FDIIGDVRG  937 (1013)
T ss_pred             --------------------------------HHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHh----CCCceEEee
Confidence                                            46666654   356677888888888888877311    1222 2222


Q ss_pred             CCCCCCCCCEEEEEEccCCCCcc-CH---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454          471 PKIRFDRGPALAFNVFDWKREKI-EP---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR  546 (603)
Q Consensus       471 p~~~~~rg~ivsFnv~~~~g~~v-~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  546 (603)
                            +|-.+.+.+...+.... ..   ..+...+-++||.++..                                  
T Consensus       938 ------~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------  977 (1013)
T PRK06148        938 ------MGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTE----------------------------------  977 (1013)
T ss_pred             ------eceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEecc----------------------------------
Confidence                  46677777643211110 11   12222233467776421                                  


Q ss_pred             ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                          +....+||+.+.+..|.+|||++++.|.+.|.+
T Consensus       978 ----g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~ 1010 (1013)
T PRK06148        978 ----GPHDNVLKIRPPLIFSRADADHLLEVLDDVLAA 1010 (1013)
T ss_pred             ----CCCCCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence                011258999999999999999999999998865

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=97.45  E-value=0.013  Score=65.35  Aligned_cols=211  Identities=12%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             CeeEEEEeCccccccccccH-HHH----HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          243 QRGLFVFPLHSRMTGARYPY-LWM----RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl-~~i----~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                      ++.-|.+--+....|.+.|- .++    ++|+++|+.+++|=+|.+ |..  |-..+.-...||++++  =|-+|+ -.+
T Consensus       222 ~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~--gK~l~g-G~p  298 (457)
T PRK05639        222 EVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIF--GKGVAS-GMG  298 (457)
T ss_pred             ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEe--chhhcC-CCc
Confidence            45555544455557887663 333    368999999999987653 211  0011112346999984  586542 124


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                      +|+++.++++++ ..    .|..        ..                 .   + .| .+....+++            
T Consensus       299 i~av~~~~~i~~-~~----~~~~--------~~-----------------T---~-~g-~p~~~aaa~------------  331 (457)
T PRK05639        299 LSGVIGRKELMD-LT----SGSA--------LL-----------------T---P-AA-NPVISAAAE------------  331 (457)
T ss_pred             ceeEEehHHHHh-hc----CCCc--------cc-----------------C---C-Cc-CHHHHHHHH------------
Confidence            799999988865 21    1110        00                 0   0 11 111111111            


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKI  473 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~~  473 (603)
                                                   +.|+.+.+   +.+.++.+.+.++|.++|.+|..    +.|++ .|-    
T Consensus       332 -----------------------------a~l~~l~~---~~l~~~~~~~g~~l~~~L~~l~~----~~~~~~~Vr----  371 (457)
T PRK05639        332 -----------------------------ATLEIIEE---ENLLKNALKVGEFIKKRLLEMKE----SFEVIGDVR----  371 (457)
T ss_pred             -----------------------------HHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHH----hCCCEEeec----
Confidence                                         46666654   34556777788888888887632    11222 222    


Q ss_pred             CCCCCCEEEEEEccCCCCccCH---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCC
Q 007454          474 RFDRGPALAFNVFDWKREKIEP---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA  550 (603)
Q Consensus       474 ~~~rg~ivsFnv~~~~g~~v~~---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  550 (603)
                        -+|-++.+.+.+..... ++   ..+.+.+-++||.++..                                      
T Consensus       372 --G~Gl~~gve~~~~~~~~-~~~~~~~~~~~~~~~Gv~~~~~--------------------------------------  410 (457)
T PRK05639        372 --GKGLMIGVEIVKENGKP-DPELTGKICWRAFELGLILPSY--------------------------------------  410 (457)
T ss_pred             --cceeEEEEEEecCCCCC-CHHHHHHHHHHHHhCCeEEeec--------------------------------------
Confidence              35667777664322111 11   12333334567776421                                      


Q ss_pred             CCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          551 NLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       551 ~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .....+||+++.+-.|.+|||++++.+.+.+..-
T Consensus       411 g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~  444 (457)
T PRK05639        411 GMFGNVIRITPPLVITKEIAEKGLEIMERAIKDA  444 (457)
T ss_pred             CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            0112489999999999999999999999998763

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=97.45  E-value=0.0023  Score=65.49  Aligned_cols=218  Identities=16%  Similarity=0.205  Sum_probs=132.1

Q ss_pred             CeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccc-cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACA-LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq-~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      +...|-+.+---+.|+-.+-  +..---+|...+.|.++ +..+   |+|++++  +.+.....|-.|  |.|+-+.+||
T Consensus       148 da~yvyyCaNETVHGVEf~~--~P~~~~~~~vlVaDmSSnflSr---pvDvsk~--gvi~aGAQKN~G--~aG~Tvvivr  218 (370)
T KOG2790|consen  148 DASYVYYCANETVHGVEFDF--IPVNDPKGAVLVADMSSNFLSR---PVDVSKF--GVIFAGAQKNVG--PAGVTVVIVR  218 (370)
T ss_pred             CccEEEEecCceeeceecCC--CCCCCCCCceEEEecccchhcC---Cccchhc--ceEEeccccccC--ccccEEEEEe
Confidence            34455555444445554331  11112367888899875 4454   9999985  567788999999  9999999999


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      ++++....+..-  ++   ..++.   ..+.           ..    .--|++..+|..++                  
T Consensus       219 ~dllg~~~~~tP--~v---~dyk~---~~~N-----------nS----lyNTpP~f~iy~~~------------------  257 (370)
T KOG2790|consen  219 KDLLGNALDITP--SV---LDYKI---MDKN-----------NS----LYNTPPCFGIYVMG------------------  257 (370)
T ss_pred             hhhhcccccCCc--cc---cceee---eccc-----------cc----cccCCCeeeeeehh------------------
Confidence            999754332110  00   01110   0110           01    24678888887776                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC-CCCC
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF-DRGP  479 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~-~rg~  479 (603)
                                            ..++++.+- |+..+++....=...|++.|.+-+     |.    .+-|-++. +.-=
T Consensus       258 ----------------------Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~-----gf----y~cpVe~~~RS~M  306 (370)
T KOG2790|consen  258 ----------------------LVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSN-----GF----YRCPVEPSVRSRM  306 (370)
T ss_pred             ----------------------hHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC-----Ce----EEcccchhhhhhc
Confidence                                  577776555 688888888888889999997532     21    11232222 2234


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      .|.|.+.+.   .+..+.+.+.+.++=|++                        +               +.+..|.+|+
T Consensus       307 NV~Fri~~d---~Le~eFLkeA~~~~mv~L------------------------K---------------GhRSVGGiRA  344 (370)
T KOG2790|consen  307 NVPFRIEKD---ELEAEFLKEAAKEHMVQL------------------------K---------------GHRSVGGIRA  344 (370)
T ss_pred             ccceeecch---HHHHHHHHHHHHhhhhcc------------------------c---------------cccccccchh
Confidence            577777642   122233333332222221                        1               3455689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          560 SLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+=---+.+++++|++|+++|...
T Consensus       345 SlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  345 SLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             hhhccccHHHHHHHHHHHHHHHHh
Confidence            998888999999999999999653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=97.43  E-value=0.013  Score=64.49  Aligned_cols=97  Identities=8%  Similarity=0.137  Sum_probs=57.4

Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPD  298 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~D  298 (603)
                      .++|++.+.... ..++...|.+--....-|.+.|    ++.+ ++|+++|+++++|=++.+ +..  +..++.....||
T Consensus       184 ~~~l~~~l~~~~-~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pd  262 (425)
T PRK08088        184 IASIERIFKNDA-APEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAAD  262 (425)
T ss_pred             HHHHHHHHHhcc-CCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCC
Confidence            445777775211 1124555555444444566665    4433 478999999999987553 221  112223334577


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeCCCCcCcC
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKKSTVPILV  329 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~  329 (603)
                      +  .|+=|.+|  | |  +|++..++++++.+.
T Consensus       263 i--~s~sK~l~--~-G~rig~v~~~~~~~~~~~  290 (425)
T PRK08088        263 L--TTFAKSIA--G-GFPLAGVTGRAEVMDAIA  290 (425)
T ss_pred             E--EEEecccc--C-CCcceeeEecHHHHhhcC
Confidence            4  66789887  3 4  699998877765554

>PLN02397 aspartate transaminase

Probab=97.36  E-value=0.011  Score=65.10  Aligned_cols=112  Identities=12%  Similarity=0.086  Sum_probs=74.4

Q ss_pred             HHHHHHcCCEEEEEec-cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEE
Q 007454          203 IRTSEKRGARVMSAEF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILI  277 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlv  277 (603)
                      ...++..|+++..++. +..+..++.+.+++.+...   ++++++++++.-+|.||.+++.+.+    .+|+++|++|+.
T Consensus       156 ~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~  232 (423)
T PLN02397        156 HNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA---PDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFF  232 (423)
T ss_pred             HHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence            3445667999999887 2123568889888887632   2368999999999999999998733    357889999999


Q ss_pred             ecc--ccC--CC--CCCCC-CCCCCCCc-EEEEcccccCCCCCCc--eEEEE
Q 007454          278 DAC--ALG--PK--DMDSF-GLSLVRPD-FLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       278 DAa--q~~--~~--~m~~l-dls~~~~D-flv~S~hK~fG~~P~G--~G~L~  319 (603)
                      |-+  .+.  +.  ...++ .+...+.. +++.||=|.||  +.|  +|.++
T Consensus       233 De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~--~~G~RvG~~v  282 (423)
T PLN02397        233 DSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG--LYGERVGALS  282 (423)
T ss_pred             ecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCC--CccccceEEE
Confidence            965  222  10  00011 11111112 55679999999  557  58775

>PRK08297 L-lysine aminotransferase; Provisional

Probab=97.35  E-value=0.0075  Score=66.92  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE--EEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV--KIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL  501 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv--~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~L  501 (603)
                      +.|+.+.+   +.+.++++.+.++|.++|.++...    .|.+  .+-      .+|.++.+.+.+..   ....+.+++
T Consensus       337 a~L~~l~~---~~l~~~~~~~g~~l~~~L~~l~~~----~~~~~~~vr------g~G~~~~i~~~~~~---~~~~~~~~l  400 (443)
T PRK08297        337 RILEVIEE---DGLVENAARQGEYLLARLEELAAE----FPAVVSNVR------GRGLMCAFDLPTTA---DRDEVIRRL  400 (443)
T ss_pred             HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHH----CCCcceeee------ccceEEEEEecCHH---HHHHHHHHH
Confidence            45665544   355667888888888888776310    1211  222      25788888886421   112233334


Q ss_pred             HhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          502 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       502 ad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                       -++||.+..+                                        +..++|+++.+..|.+||+++++.|.+.+
T Consensus       401 -~~~Gvl~~~~----------------------------------------~~~~lr~~P~l~~t~~eid~~l~~l~~~l  439 (443)
T PRK08297        401 -WEEGVLVLPC----------------------------------------GERSIRFRPALTVTTEEIDAAIDALRRAL  439 (443)
T ss_pred             -HHCCEEEecC----------------------------------------CCCeEEEECCccCCHHHHHHHHHHHHHHH
Confidence             4678876311                                        11379999999999999999999999887


Q ss_pred             hh
Q 007454          582 DA  583 (603)
Q Consensus       582 ~~  583 (603)
                      +.
T Consensus       440 ~~  441 (443)
T PRK08297        440 PE  441 (443)
T ss_pred             Hh
Confidence            53

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=97.32  E-value=0.18  Score=53.94  Aligned_cols=104  Identities=21%  Similarity=0.281  Sum_probs=69.0

Q ss_pred             HHcCCEEEEEeccCCccc--cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEecc
Q 007454          207 EKRGARVMSAEFSWPRLR--INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDAC  280 (603)
Q Consensus       207 ~~~Ga~V~~~~~~~~~g~--i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAa  280 (603)
                      +..|-++...|+...+++  +|.++|++.+.+     .+++||.+..-.|.||.+..-+.   | .+|++||+.|+.|=.
T Consensus       125 ~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~-----~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEI  199 (388)
T COG1168         125 KLNGRKVIENPLVEDDGRYEIDFDALEKAFVD-----ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEI  199 (388)
T ss_pred             hhcCcEEEeccccccCCcEEecHHHHHHHHhc-----CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecc
Confidence            344556666666544555  599999999985     36799999999999999998763   3 368999999999963


Q ss_pred             c----cCCCCCCCCC-CCCCCCc--EEEEcccccCCCCCCceEE
Q 007454          281 A----LGPKDMDSFG-LSLVRPD--FLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       281 q----~~~~~m~~ld-ls~~~~D--flv~S~hK~fG~~P~G~G~  317 (603)
                      .    +.|+...++. |+....|  +.+.|.-|-|.  -.|+.|
T Consensus       200 HaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN--laGL~~  241 (388)
T COG1168         200 HADLVLGGHKHIPFASLSERFADNSITLTSASKTFN--LAGLKC  241 (388)
T ss_pred             cccccccCCCccchhhcChhhhcceEEEeecccccc--chhhhh
Confidence            1    2232112322 3333223  55666689887  335544

>PRK09275 aspartate aminotransferase; Provisional

Probab=97.28  E-value=0.013  Score=66.34  Aligned_cols=104  Identities=16%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             CCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHh--CCcEEEEecc--
Q 007454          210 GARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQE--NDWHILIDAC--  280 (603)
Q Consensus       210 Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e--~g~~vlvDAa--  280 (603)
                      |.+++.++.+. .+..++.++|++++.      ++++++.+..-+|.||.+++-+.+    .+|++  ++++|+.|-+  
T Consensus       213 ~~~~v~v~~~~~~~f~~d~~~l~~~~~------~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~  286 (527)
T PRK09275        213 DLEVVHINADEENEWQYPDSELEKLRD------PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG  286 (527)
T ss_pred             CeEEEEeecCcccCCCCCHHHHHhhcC------CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCCh
Confidence            44555554431 124678899988765      368888887889999999996633    35643  5999999975  


Q ss_pred             ccCCCCCCCCCCCCC-CCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          281 ALGPKDMDSFGLSLV-RPDFLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       281 q~~~~~m~~ldls~~-~~Dflv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                      -+.+.. .++ ++.. .--+++.||=|.||  -+|  +|.++..++
T Consensus       287 ~f~~~~-~s~-~~~~~~~~I~v~SfSK~f~--mtG~RlG~i~~~~~  328 (527)
T PRK09275        287 TFVDDF-RSL-FAVLPYNTILVYSFSKYFG--ATGWRLGVIALHED  328 (527)
T ss_pred             hhcccc-cCH-HHhCCCCEEEEeehhhhcc--CcHhHHhhhhcCch
Confidence            222210 121 1111 12477789999999  447  698887765

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=97.26  E-value=0.036  Score=58.06  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=69.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHH-HHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMR-IAQENDWHILIDACALG----PKDMDSFGLSLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~-~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~  296 (603)
                      +.++|+..|..     ++..-|.+--..-+-|++.|=.    .++ +|.++++++++|-.|.+    |+ |.-.|-+..+
T Consensus       195 d~eale~~l~~-----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~env~  268 (427)
T KOG1402|consen  195 DAEALEVALKS-----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYENVR  268 (427)
T ss_pred             CHHHHHHHhcC-----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhhcC
Confidence            57889988875     4677777767778999988843    343 78999999999998877    44 5677888899


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ||.+++.  |-+++.--=+-+.+..++++-.++|
T Consensus       269 PDivilg--KalSGG~~Pvsavl~~~~im~~~~p  300 (427)
T KOG1402|consen  269 PDIVILG--KALSGGVYPVSAVLADDDIMLNIKP  300 (427)
T ss_pred             CCeEEEe--ccccCCeeeeEEEEecHHHHhccCC
Confidence            9999874  5443101125667777777755555

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=97.24  E-value=0.011  Score=66.77  Aligned_cols=104  Identities=17%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             cCCEEEEEeccCCc------cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhC--CcEEE
Q 007454          209 RGARVMSAEFSWPR------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQEN--DWHIL  276 (603)
Q Consensus       209 ~Ga~V~~~~~~~~~------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~--g~~vl  276 (603)
                      .|++++.++.+..+      ..++.++|++++.      ++++++.+.--+|.||.+++.+.+    .+|+++  +++|+
T Consensus       206 ~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~------~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II  279 (521)
T TIGR03801       206 YDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD------PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMIL  279 (521)
T ss_pred             CCcEEEEeecccccccccccCCCCHHHHHHhcC------CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEE
Confidence            46777777664211      4678889988764      367888777778999999997633    357775  89999


Q ss_pred             Eecc--ccCCCCCCCCCCCCCCCc--EEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          277 IDAC--ALGPKDMDSFGLSLVRPD--FLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       277 vDAa--q~~~~~m~~ldls~~~~D--flv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                      .|=+  .+... ..++ ++. -+|  +++.|+=|.||.  +|  +|.++..+.
T Consensus       280 ~DEvY~~f~~~-~~sl-~~~-~~~~vI~v~SfSK~fg~--~G~RlG~i~~~~~  327 (521)
T TIGR03801       280 TDDVYGTFVDD-FRSL-FAE-LPYNTIGVYSFSKYFGA--TGWRLGTIALHKD  327 (521)
T ss_pred             ECCCchhhccc-ccch-hhh-CCCCEEEEEcchhhccC--chhhhhhhhcCch
Confidence            9975  22321 1122 111 233  778899999994  46  888887654

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=97.23  E-value=0.025  Score=62.83  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCCCCCCCCCEEEEEEc-cCCCCccCH---HHH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVF-DWKREKIEP---VLV  498 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~-~~~g~~v~~---~~V  498 (603)
                      +.++.+.+   +.+.++++.+.++|.++|+++..    +.|.+ .+-      .+|.++.+.+. +.+...-+.   ..+
T Consensus       330 a~l~~i~~---~~~~~~~~~~g~~l~~~l~~l~~----~~~~~~~vr------g~G~~~~~~~~~~~~~~~~~~~~~~~l  396 (451)
T PRK06918        330 AVLDIIEK---ENLNDRAIELGKVVMNRFEEMKN----KYNCIGDVR------GLGAMCAFELVQDRKTKEPDKTLTANI  396 (451)
T ss_pred             HHHHHHHH---CCHHHHHHHHHHHHHHHHHHHHh----hCCCceeec------cceeEEEEEEccCCCcCCCcHHHHHHH
Confidence            35665543   34566788888888888887631    11211 121      24667766653 211000011   123


Q ss_pred             HHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          499 QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       499 ~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                      .+.+.++||.+..|.                                     .. ..+||+++.+-.|.+||+.+++.|.
T Consensus       397 ~~~~~~~Gvlv~~~~-------------------------------------~~-~~~lrl~p~l~~t~~~id~~l~~l~  438 (451)
T PRK06918        397 CKEANKRGLLLLSAG-------------------------------------TY-GNVIRVLMPLVITDEQLEEGLTIIE  438 (451)
T ss_pred             HHHHHHCCeEEeecC-------------------------------------CC-CCEEEEECCCccCHHHHHHHHHHHH
Confidence            333356788875430                                     01 1589999999888999999999999


Q ss_pred             HHHhhh
Q 007454          579 QFLDAD  584 (603)
Q Consensus       579 ~~l~~~  584 (603)
                      +++..-
T Consensus       439 ~~l~~~  444 (451)
T PRK06918        439 ESLQAC  444 (451)
T ss_pred             HHHHHH
Confidence            999754

>PRK08637 hypothetical protein; Provisional

Probab=97.22  E-value=0.015  Score=63.15  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=68.8

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHh-----CCcEEEEe
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQE-----NDWHILID  278 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e-----~g~~vlvD  278 (603)
                      ..|++++.++....+..++.++|++.+...  ..+.+.++.++--+|.||..++.+.+    .+|++     ++++++.|
T Consensus       113 ~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~--~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D  190 (388)
T PRK08637        113 RRGAEIVTYPIFDEDGGFDTDALKEALQAA--YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD  190 (388)
T ss_pred             hcCCEEEEecccCCCCcCCHHHHHHHHHhh--ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence            469999999873234568999999888610  01246778888889999999998633    23453     89999999


Q ss_pred             ccc--c--CCCCCCCC--CCCCCCCcEE---EEcccccCCCCCCceEEEEEe
Q 007454          279 ACA--L--GPKDMDSF--GLSLVRPDFL---ICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       279 Aaq--~--~~~~m~~l--dls~~~~Dfl---v~S~hK~fG~~P~G~G~L~vk  321 (603)
                      -+=  +  .++.+.++  .+.......+   +.|+-|.|+.|---+|.+++.
T Consensus       191 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~  242 (388)
T PRK08637        191 DAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFG  242 (388)
T ss_pred             ccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEc
Confidence            752  2  22211111  1111111222   239999887531127877764

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=97.20  E-value=0.013  Score=60.39  Aligned_cols=226  Identities=17%  Similarity=0.164  Sum_probs=130.8

Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC---CCC----CCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG---PKD----MDSFGLSLV  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~---~~~----m~~ldls~~  295 (603)
                      -++.-+|+..+...  .+-+.+||+--.+=.+-|-+-|++.| .+++++|+++++|-|..-   |..    -..+++. -
T Consensus       176 h~dv~~l~~~l~~a--~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm-~  252 (417)
T KOG1359|consen  176 HVDVFDLEHCLISA--CKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVM-G  252 (417)
T ss_pred             cchhHHHHHHHHHh--hhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCC-C
Confidence            35566777655431  12367899888888899999999966 589999999999965432   221    0123332 3


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      ++|.+.-..-|-.|+ -. -|..-..+.+.+.|+...           +.                       +.-.+.=
T Consensus       253 ~vdiinsTLgKAlGg-a~-GGyttgp~~li~llrqr~-----------Rp-----------------------ylFSnsl  296 (417)
T KOG1359|consen  253 DVDIINSTLGKALGG-AS-GGYTTGPKPLISLLRQRS-----------RP-----------------------YLFSNSL  296 (417)
T ss_pred             cceehhhhhhhhhcC-CC-CCCccCChhHHHHHHhcC-----------Cc-----------------------eeecCCC
Confidence            578888777786663 11 122222233222222100           00                       0011111


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      .+.+++++.                                       +++|.+-  .-.++-.+.+..++|+.+.+..-
T Consensus       297 ppavV~~a~---------------------------------------ka~dllm--~s~~~i~~~~a~~qrfr~~me~a  335 (417)
T KOG1359|consen  297 PPAVVGMAA---------------------------------------KAYDLLM--VSSKEIQSRQANTQRFREFMEAA  335 (417)
T ss_pred             ChhhhhhhH---------------------------------------HHHHHHH--hhHHHHHHHHHHHHHHHHHHHhc
Confidence            223444442                                       5666543  33566667788889998888642


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHh---cCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLAD---RENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad---~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                            |   +.|-|..     -||...-+-|..       +-.+++|   +.||.|=       ++.-+-         
T Consensus       336 ------G---ftIsg~~-----hPI~pv~lGda~-------lA~~~ad~lLk~Gi~Vi-------gfs~Pv---------  378 (417)
T KOG1359|consen  336 ------G---FTISGAS-----HPICPVMLGDAR-------LASKMADELLKRGIYVI-------GFSYPV---------  378 (417)
T ss_pred             ------C---ceecCCC-----CCccceecccHH-------HHHHHHHHHHhcCceEE-------eecCCc---------
Confidence                  2   6777642     467776665531       2223322   4677763       111110         


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                .       ..+.--+|+-++...|+||||++++++.+..+-
T Consensus       379 ----------V-------P~gkariRVqiSAaHt~edid~~i~Af~~vgr~  412 (417)
T KOG1359|consen  379 ----------V-------PKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF  412 (417)
T ss_pred             ----------C-------CCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence                      0       112236999999999999999999999887654

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=97.15  E-value=0.023  Score=62.73  Aligned_cols=96  Identities=17%  Similarity=0.099  Sum_probs=62.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccCCCCCCCC---CCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALGPKDMDSF---GLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~~~~m~~l---dls~~~~  297 (603)
                      +.+.|++.|...   ..++..|.+--+....|.+.|    ++.+. +|+++|+.+++|=+|.+-.. ...   ..-...|
T Consensus       186 d~~~l~~~l~~~---~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt-~~~~a~~~~gv~P  261 (428)
T PRK12389        186 DIEALKEALDKW---GDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRF-MYGGAQDLLGVEP  261 (428)
T ss_pred             CHHHHHHHHHhc---CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-CcchhhHHhCCCC
Confidence            577888888632   124555555545556799888    66564 79999999999988775321 111   1112469


Q ss_pred             cEEEEcccccCCC-CCCceEEEEEeCCCCcCcC
Q 007454          298 DFLICSFYQIFGE-NPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       298 Dflv~S~hK~fG~-~P~G~G~L~vkk~~~~~L~  329 (603)
                      |++++  =|.+|+ .|  +|++..++++++.+.
T Consensus       262 Divt~--gK~lggG~P--i~av~~~~~i~~~~~  290 (428)
T PRK12389        262 DLTAL--GKIIGGGLP--IGAYGGRKDIMEQVA  290 (428)
T ss_pred             Ceeee--chhhcCCCc--eeEEeEHHHHHhhhc
Confidence            98755  476542 12  799999988876554

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=97.15  E-value=0.06  Score=60.08  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=65.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCC-------ccCH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKRE-------KIEP  495 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~-------~v~~  495 (603)
                      +.|+.+++-   .+.++++.+.++|.++|.++..    ..|.| .+-      -+|.++.+.+.+....       ..+.
T Consensus       335 a~L~~l~~~---~l~~~~~~~G~~l~~~L~~l~~----~~~~i~~vr------G~Glm~giel~~~~~~~~~~~~~~~~~  401 (459)
T PRK06931        335 TTLKILKEE---NLAQNAAERGEWLKAQLAELQK----RYPCIGNVR------GRGLMIGIEIVDERQPADAMGSYPADG  401 (459)
T ss_pred             HHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHH----hCCCeEeEe------cCceEEEEEEccCcccccccccCCccH
Confidence            466665543   4567788888888888887731    01222 222      3567777777432110       0011


Q ss_pred             ---HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHH
Q 007454          496 ---VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYR  572 (603)
Q Consensus       496 ---~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~  572 (603)
                         ..+.+.+-++||.++.+                                      .....++|+.+.+-.|.+||+.
T Consensus       402 ~~~~~~~~~~~~~Gvl~~~~--------------------------------------~~~~~~l~~~Ppl~it~~eid~  443 (459)
T PRK06931        402 ELAAAIQKACFENGLLLERG--------------------------------------GRNGNVVRLLPPLLITQAECEE  443 (459)
T ss_pred             HHHHHHHHHHHHCCcEEeec--------------------------------------CCCCCEEEEECCCCcCHHHHHH
Confidence               12223333566665421                                      0112489999999999999999


Q ss_pred             HHHHHHHHHhh
Q 007454          573 LWAFVAQFLDA  583 (603)
Q Consensus       573 l~~~l~~~l~~  583 (603)
                      +++.+.+.|.+
T Consensus       444 ~~~~l~~~l~~  454 (459)
T PRK06931        444 FIDRFEQALLA  454 (459)
T ss_pred             HHHHHHHHHHH
Confidence            99999998865

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.13  E-value=0.048  Score=64.81  Aligned_cols=83  Identities=11%  Similarity=0.170  Sum_probs=51.5

Q ss_pred             eEEEEeCccccccccccH-H---HH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          245 GLFVFPLHSRMTGARYPY-L---WM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl-~---~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                      .+++=|.+...-|.+.|= .   .+ ++|+++|+++++|=++.+ |..  |-..+.-...||+++++  |.+++.-.=+|
T Consensus       587 AvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Pla  664 (817)
T PLN02974        587 ALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLA  664 (817)
T ss_pred             EEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccE
Confidence            455556555667887652 2   33 368999999999977654 220  11222223469999986  75542001179


Q ss_pred             EEEEeCCCCcCcC
Q 007454          317 CLFVKKSTVPILV  329 (603)
Q Consensus       317 ~L~vkk~~~~~L~  329 (603)
                      ++++++++++.+.
T Consensus       665 a~l~~~~I~~~f~  677 (817)
T PLN02974        665 ATLATEEVFEAFR  677 (817)
T ss_pred             EEEEcHHHHHhhc
Confidence            9999988876553

>PRK07046 aminotransferase; Validated

Probab=97.01  E-value=0.03  Score=62.34  Aligned_cols=91  Identities=12%  Similarity=0.095  Sum_probs=58.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-----CCCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-----GPKDMDSFGLSLV  295 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-----~~~~m~~ldls~~  295 (603)
                      +.+.|++.+..     .+...|.+--.....|.+.|    ++.+ ++|+++|+.+++|=++.     ++. ..-.   ..
T Consensus       206 d~~~l~~~l~~-----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~-~~~~---gv  276 (453)
T PRK07046        206 DLAALEAALAD-----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGY-TRAH---GL  276 (453)
T ss_pred             CHHHHHHHhCC-----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcch-hHHh---CC
Confidence            56778877742     24554444444444687777    3444 37899999999998774     222 0112   34


Q ss_pred             CCcEEEEcccccCC-CCCCceEEEEEeCCCCcCcC
Q 007454          296 RPDFLICSFYQIFG-ENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       296 ~~Dflv~S~hK~fG-~~P~G~G~L~vkk~~~~~L~  329 (603)
                      .||++++  =|.+| +.|  +|++..|+++++.+.
T Consensus       277 ~PDi~t~--gK~lggG~P--i~av~g~~~i~~~~~  307 (453)
T PRK07046        277 EPDFLVV--GKPIAGGVP--CAVYGFSAELAERAQ  307 (453)
T ss_pred             Cccceee--hhhhcCCCc--ceeeeehHHHHHHHh
Confidence            6999875  57544 224  789999998876554

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=97.01  E-value=0.14  Score=55.19  Aligned_cols=144  Identities=15%  Similarity=0.274  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCchH--------------------HH-----------------HHHHHHHcCCEEE
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESEAV--------------------EA-----------------MIRTSEKRGARVM  214 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV--------------------~~-----------------~~~~a~~~Ga~V~  214 (603)
                      +-++|+-.+++||+++++++-.-+| |+                    +|                 =...++..|++..
T Consensus        71 ipe~r~l~a~llgv~~~~viv~gNS-SL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~Giemi  149 (425)
T PF12897_consen   71 IPEARELFAELLGVPPENVIVGGNS-SLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFGIEMI  149 (425)
T ss_dssp             -HHHHHHHHHHHTS-GGGEEE-SS--HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT-EEE
T ss_pred             hHHHHHHHHHHhCCCHHHEEEeccc-hHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhCcEEE
Confidence            5689999999999999998532111 11                    11                 1234577899999


Q ss_pred             EEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HH----HhCCcEEEEeccccCCCCCC-
Q 007454          215 SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IA----QENDWHILIDACALGPKDMD-  288 (603)
Q Consensus       215 ~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a----~e~g~~vlvDAaq~~~~~m~-  288 (603)
                      .+|.. ++| .|.+.+++++..+.   .-.++.++|--||.||+.|+=+.++ +|    ...+-.++.|-+-.+-| +. 
T Consensus       150 ~VpM~-~dG-PDmD~Ve~LV~~D~---svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHh-L~~  223 (425)
T PF12897_consen  150 PVPMT-EDG-PDMDMVEELVAEDP---SVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHH-LYD  223 (425)
T ss_dssp             EEEEE-TTE-E-HHHHHHHTHTST---TEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-B-SSS
T ss_pred             ecCCC-CCC-CCHHHHHHHHhcCC---ccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEee-ccc
Confidence            99887 344 58999999986431   2368999999999999999988775 44    34678888997644433 10 


Q ss_pred             --C----CCC-----CCCCCc--EEEEccccc-CCCCCCceEEEEEeCCC
Q 007454          289 --S----FGL-----SLVRPD--FLICSFYQI-FGENPSGFGCLFVKKST  324 (603)
Q Consensus       289 --~----ldl-----s~~~~D--flv~S~hK~-fG~~P~G~G~L~vkk~~  324 (603)
                        +    +|+     +.-.||  |+.+|.-|+ |-  -.|++++-..+.-
T Consensus       224 ~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~--GaGva~~aaS~~N  271 (425)
T PF12897_consen  224 EEPRDALLNILDACAKAGNPDRVYVFASTSKITFP--GAGVAFFAASEAN  271 (425)
T ss_dssp             SSS------HHHHHHHTT-TTSEEEEEESTTTS-T--TSS-EEEEE-HHH
T ss_pred             cccchhhhHHHHHHHHcCCCCeEEEEecccccccC--CcceeeeecCHHH
Confidence              0    111     012344  677888886 44  2367766655443

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=96.96  E-value=0.036  Score=62.06  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=61.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HH-HHHHhCCcEEEEeccccCCCCCCCCCC---CCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WM-RIAQENDWHILIDACALGPKDMDSFGL---SLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl---s~~~~  297 (603)
                      +.+.|++.|...   ......|.+-.+....|.+.|..    .+ ++|+++|+.+++|=++.+-.. .....   -...|
T Consensus       232 d~~~l~~~l~~~---~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~-g~~ga~~~~gv~P  307 (474)
T PLN02482        232 DLEAVKKLFEAN---KGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRI-AYGGAQEYFGITP  307 (474)
T ss_pred             ChHHHHHHHHhC---CCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeec-CcchHhHHhCCCC
Confidence            567888888632   13455555555555679888853    23 478999999999988753210 11111   12369


Q ss_pred             cEEEEcccccCCC-CCCceEEEEEeCCCCcCcC
Q 007454          298 DFLICSFYQIFGE-NPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       298 Dflv~S~hK~fG~-~P~G~G~L~vkk~~~~~L~  329 (603)
                      |.+++  =|.+|+ .|  +|++..++++++.+.
T Consensus       308 Di~t~--gK~lggG~P--igav~g~~ei~~~~~  336 (474)
T PLN02482        308 DLTTL--GKVIGGGLP--VGAYGGRREIMEMVA  336 (474)
T ss_pred             CEEEe--cchhhCCCc--eEEEEEcHHHHHhhc
Confidence            98765  586652 13  799999988876554

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=96.94  E-value=0.15  Score=55.04  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=77.2

Q ss_pred             HHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-H---HHHhCCcEEEEecc-
Q 007454          207 EKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-R---IAQENDWHILIDAC-  280 (603)
Q Consensus       207 ~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~---~a~e~g~~vlvDAa-  280 (603)
                      .+.|++++.+..... +.+|+.+.|+.++...++...+++=+.++--||..|+.++=+.+ .   -|+++++||++|=. 
T Consensus       189 ~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIy  268 (471)
T KOG0256|consen  189 WRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIY  268 (471)
T ss_pred             eccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhh
Confidence            467888888887543 34889999999887544445567777788889999999998743 3   37899999999953 


Q ss_pred             --ccCCCC-CCC---C-CCCCCCCc--EEEEcccccCCCCCCceEEEEEeCC
Q 007454          281 --ALGPKD-MDS---F-GLSLVRPD--FLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       281 --q~~~~~-m~~---l-dls~~~~D--flv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                        ....+. -.+   + ..-.+.+|  -++.|--|=||-|---+|++|-.++
T Consensus       269 a~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne  320 (471)
T KOG0256|consen  269 AGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE  320 (471)
T ss_pred             cccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh
Confidence              222220 000   0 00011333  4678888988863222788887654

>PLN02368 alanine transaminase

Probab=96.87  E-value=0.0075  Score=66.16  Aligned_cols=145  Identities=13%  Similarity=0.091  Sum_probs=90.0

Q ss_pred             HHHHHHHHHc----C--CCCCcEEEeccCc-hHHHH----------------------HHHHHHcCCEEEEEeccCC-cc
Q 007454          174 AMKKRIMDFL----N--ISENDYVYDYESE-AVEAM----------------------IRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~e~vf~~es~-sV~~~----------------------~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      +.|+.|++++    |  +++++++.+..+. ++..+                      ...++..|++++.++++.. +.
T Consensus       111 ~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~~~~~  190 (407)
T PLN02368        111 GVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEESENW  190 (407)
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecccccCC
Confidence            6777888777    5  5778887765432 22221                      2234456777877777522 24


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecc--ccC--CC-CCCCC----
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDAC--ALG--PK-DMDSF----  290 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAa--q~~--~~-~m~~l----  290 (603)
                      .++.++|++.+...+.+..+++++.+..-+|.||.+++.+.+    ..|++++++|+.|-+  .+.  +. ...++    
T Consensus       191 ~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~  270 (407)
T PLN02368        191 GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVL  270 (407)
T ss_pred             CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHH
Confidence            688999999986321112257877787779999999999744    357899999999975  222  21 00111    


Q ss_pred             -CCC----CCCCcEEEEcccccC-CCCCCc--eEEEEE
Q 007454          291 -GLS----LVRPDFLICSFYQIF-GENPSG--FGCLFV  320 (603)
Q Consensus       291 -dls----~~~~Dflv~S~hK~f-G~~P~G--~G~L~v  320 (603)
                       ++.    ...-=+++.||-|.| |.  .|  +|.+++
T Consensus       271 ~~~~~~~~~~~~vI~~~SfSK~~~~~--~GlRiGy~i~  306 (407)
T PLN02368        271 MDMGPPISKEVQLVSFHTVSKGYWGE--CGQRGGYFEM  306 (407)
T ss_pred             hhhcccccccceEEEEecCCcccccC--CccceEEEEE
Confidence             110    011226678999987 64  35  787774

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=96.56  E-value=0.084  Score=58.36  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=52.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEE
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLI  301 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls---~~~~Dflv  301 (603)
                      +.++|++.|...   ..++..|++-.+..+.+..-+++.+ ++|+++|+.+++|-++.+-. +......   ...||+++
T Consensus       173 d~~~l~~~l~~~---~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~-~~~~g~~~~~gv~PDi~t  248 (431)
T PRK06209        173 DIASLEALFEDH---PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFR-WHMRGAQKLYGIVPDLSC  248 (431)
T ss_pred             CHHHHHHHHHhC---CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCC-cCcchhhHHhCCCcceee
Confidence            578888888631   1234444443322122222225544 47899999999999874421 1111122   23689866


Q ss_pred             EcccccCCC-CCCceEEEEEeCCCCc
Q 007454          302 CSFYQIFGE-NPSGFGCLFVKKSTVP  326 (603)
Q Consensus       302 ~S~hK~fG~-~P~G~G~L~vkk~~~~  326 (603)
                      +  =|-+|+ .|  +|++..++++++
T Consensus       249 ~--gK~lggG~p--~~av~~~~~i~~  270 (431)
T PRK06209        249 F--GKALGNGFA--VSALAGKREYME  270 (431)
T ss_pred             e--hhhhcCCcc--cEEEEEHHHHHh
Confidence            5  586652 12  788888877654

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=96.55  E-value=0.029  Score=61.73  Aligned_cols=111  Identities=16%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             HHcCCEEEEEecc--------C-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccc-ccccccHHHHH----HHHhCC
Q 007454          207 EKRGARVMSAEFS--------W-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARYPYLWMR----IAQEND  272 (603)
Q Consensus       207 ~~~Ga~V~~~~~~--------~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~-TG~~~pl~~i~----~a~e~g  272 (603)
                      .-.|+.+..+..+        - ..|.+++++|++.|.....  .+...+.....+|. -|...|++.|+    +|+++|
T Consensus       140 ~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~--~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~G  217 (467)
T TIGR02617       140 QINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYD  217 (467)
T ss_pred             HHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC--CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcC
Confidence            3457776654321        1 2588999999999974211  12333333334454 46789998664    579999


Q ss_pred             cEEEEeccccC-----------CCCCCCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          273 WHILIDACALG-----------PKDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       273 ~~vlvDAaq~~-----------~~~m~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +.+|+|+|=++           +.  ...++++      -.+|.+++|+=|-+|. |-| |+|..+++
T Consensus       218 IplhLDgARl~nNA~fIk~rE~~a--~~~si~eI~rE~~~~aDsvt~slsKglgA-pvG-g~Lag~d~  281 (467)
T TIGR02617       218 IPVVMDSARFAENAYFIKQREAEY--KNWSIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCFKDD  281 (467)
T ss_pred             CcEEEEhHHHHHHhhhhhhcchhh--cCCCHHHHHHHhhccCCEEEEEcCCCCCC-ccc-ceEEecch
Confidence            99999995322           11  1222221      3699999999999997 543 34555555

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=96.33  E-value=0.62  Score=52.92  Aligned_cols=110  Identities=19%  Similarity=0.237  Sum_probs=75.2

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccc-ccHH-HHHHHHhCCcEEEEecccc---
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGAR-YPYL-WMRIAQENDWHILIDACAL---  282 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~-~i~~a~e~g~~vlvDAaq~---  282 (603)
                      -.|.+|+.+..+ .+|.|+..+|+.+....+. .=..-+|.+|.-   .|+- -.++ .+.+.|++|-.|.+|++-.   
T Consensus       649 MagmkvvpV~~~-~~G~id~~dLk~kaekh~~-~Laa~MvTYPST---~GvfE~~i~d~cd~iHehGGQVYlDGANMNAq  723 (1001)
T KOG2040|consen  649 MAGMKVVPVGCD-ANGNIDMVDLKAKAEKHKD-NLAALMVTYPST---HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQ  723 (1001)
T ss_pred             hcCCEEEEeecc-CCCCccHHHHHHHHHHhhh-hhheeEEecccc---cccccccHHHHHHHHHhcCCEEEecCCCccce
Confidence            358889888888 5899999999988764211 112334444432   4543 3465 6678999999999998633   


Q ss_pred             -CCCCCCCCCCCCCCCcEEEEcccccC------CCCCCceEEEEEeCCCCcCcC
Q 007454          283 -GPKDMDSFGLSLVRPDFLICSFYQIF------GENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       283 -~~~~m~~ldls~~~~Dflv~S~hK~f------G~~P~G~G~L~vkk~~~~~L~  329 (603)
                       +-.  .|=   +++.|.--...||.|      |+ | |+|=+-||+.+..-|.
T Consensus       724 VGlc--~pG---d~GaDV~HLNLHKTFcIPHGGGG-P-g~gPIgVK~HLapfLP  770 (1001)
T KOG2040|consen  724 VGLC--RPG---DIGADVCHLNLHKTFCIPHGGGG-P-GMGPIGVKKHLAPFLP  770 (1001)
T ss_pred             eccc--CCc---cccccceeecccceeeecCCCCC-C-CCCccchhhhccccCC
Confidence             322  222   467899999999976      33 3 7888889988765443

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.53  Score=50.65  Aligned_cols=147  Identities=22%  Similarity=0.334  Sum_probs=85.4

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEec-cCC----------c----cccCHHHHHHHHhhcC
Q 007454          174 AMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEF-SWP----------R----LRINSEKLRKMVVSKG  238 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~-~~~----------~----g~i~~~~L~~~l~~~~  238 (603)
                      +.-++||+|||+ ++-++|.+.-..+...+.+..++|.-+...+- +|.          +    .-.+.++|+..+....
T Consensus       143 dlE~~iakF~G~-E~aivYs~gF~ti~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhndm~~lerll~E~~  221 (467)
T KOG1358|consen  143 DLEKRIAKFMGT-EDAIVYSYGFSTIESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHNDMEDLERLLPEQE  221 (467)
T ss_pred             ccHHHHHHhhCC-cceeeeccccchhhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCCCHHHHHHhccCcc
Confidence            445689999998 45566665433344333344445544333221 110          0    1136778877664311


Q ss_pred             ----C--CCCC-eeEEEEeCccccccccccHH-HHHHHHhCCcEEEEeccccCCCC-------CCCCCCCCCCCcEEEEc
Q 007454          239 ----K--KKKQ-RGLFVFPLHSRMTGARYPYL-WMRIAQENDWHILIDACALGPKD-------MDSFGLSLVRPDFLICS  303 (603)
Q Consensus       239 ----~--~~~~-t~Lv~~~~~Sn~TG~~~pl~-~i~~a~e~g~~vlvDAaq~~~~~-------m~~ldls~~~~Dflv~S  303 (603)
                          |  ++.. .+.+++-.....||.+.|+. ++++..++...|++|=+-..|.-       -.-+++..-.+|.+++|
T Consensus       222 ~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~s  301 (467)
T KOG1358|consen  222 DEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTAS  301 (467)
T ss_pred             hhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeec
Confidence                1  1122 45667778888899999998 55788899999999965333210       01133444468999998


Q ss_pred             ccccCCCCCCceEEEEEeCCCC
Q 007454          304 FYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       304 ~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      .---++    +.|+..+-++.+
T Consensus       302 m~~ala----s~GgFc~G~~~i  319 (467)
T KOG1358|consen  302 METALA----SGGGFCAGKSFI  319 (467)
T ss_pred             cccccc----ccCceeecceee
Confidence            877655    344444445555

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=96.12  E-value=0.03  Score=60.32  Aligned_cols=112  Identities=13%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             cCCEEEEEecc-------CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HHH-HHHhCCcEEEE
Q 007454          209 RGARVMSAEFS-------WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WMR-IAQENDWHILI  277 (603)
Q Consensus       209 ~Ga~V~~~~~~-------~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i~-~a~e~g~~vlv  277 (603)
                      .|.+.+.++..       .++..+|.++|++++..      +|+++++.--+|.||.+++=+   .|+ +|++||.+|+.
T Consensus       137 aG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvis  210 (420)
T KOG0257|consen  137 AGGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVIS  210 (420)
T ss_pred             cCCcceeeccccccccccCccccCChHHHHhhccC------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEE
Confidence            37777777665       34567899999999985      699999999999999999965   343 78999999999


Q ss_pred             ecc-ccC---CCCCCCC-C-CCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCc
Q 007454          278 DAC-ALG---PKDMDSF-G-LSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPIL  328 (603)
Q Consensus       278 DAa-q~~---~~~m~~l-d-ls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L  328 (603)
                      |-+ +..   |..|..+ . -..+..-.-+.||=|.||  -||  +|-++..+.++..+
T Consensus       211 DevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~--~TGWrlGW~igp~~L~~~~  267 (420)
T KOG0257|consen  211 DEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFG--VTGWRLGWAIGPKHLYSAL  267 (420)
T ss_pred             hhHhHHHhhCCCcceeeecCCchhheEEEeccccceee--eeeeeeeeeechHHhhhhH
Confidence            975 222   2211111 0 111234456899999999  678  78787765554333

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=96.00  E-value=0.86  Score=51.60  Aligned_cols=135  Identities=16%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHH---------------------HHcCCEEEEEeccC-C----ccc
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTS---------------------EKRGARVMSAEFSW-P----RLR  224 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a---------------------~~~Ga~V~~~~~~~-~----~g~  224 (603)
                      .+.+|-+.+|+.+|++..=++-.=.|.+...|+.+.                     --.|+.-+++.... |    -+.
T Consensus        71 ~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi~gg  150 (557)
T COG1982          71 PIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGIIGG  150 (557)
T ss_pred             cHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccccCC
Confidence            456788889999998755443222222323333222                     23466666654331 1    246


Q ss_pred             cCHHHHHHHHhhcCCCCCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc---cCCCCCCCCCCCCCCCcE
Q 007454          225 INSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA---LGPKDMDSFGLSLVRPDF  299 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq---~~~~~m~~ldls~~~~Df  299 (603)
                      |+.+.+++.+..++    .. ++.+++.- .--|+.+++++| ..++..+|+|++|-+.   ...++|.+..-.+.+.||
T Consensus       151 I~~~~~~~~l~~~~----~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~  225 (557)
T COG1982         151 IPLETFKEALLAHP----DAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADF  225 (557)
T ss_pred             CCHHHHHHHHHhCh----hhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceE
Confidence            89999999877532    23 66666544 357999999965 5899999999999753   333433333112368999


Q ss_pred             EEEcccccCCC
Q 007454          300 LICSFYQIFGE  310 (603)
Q Consensus       300 lv~S~hK~fG~  310 (603)
                      ++-|.||..|+
T Consensus       226 ~tqS~HK~l~a  236 (557)
T COG1982         226 VTQSTHKLLAA  236 (557)
T ss_pred             EEechhhhhhh
Confidence            99999999884

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=95.97  E-value=0.28  Score=54.21  Aligned_cols=225  Identities=18%  Similarity=0.224  Sum_probs=128.2

Q ss_pred             HHHHHHHHhhcCCCCCC-eeEEEEeCccccccccccHH-H---HH-HHHhCCcEEEEecc--ccC--CCCCCCCCCC--C
Q 007454          227 SEKLRKMVVSKGKKKKQ-RGLFVFPLHSRMTGARYPYL-W---MR-IAQENDWHILIDAC--ALG--PKDMDSFGLS--L  294 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~-t~Lv~~~~~Sn~TG~~~pl~-~---i~-~a~e~g~~vlvDAa--q~~--~~~m~~ldls--~  294 (603)
                      .++|+++|....  ..+ ..+++=|.+.-..|.+.|-. +   ++ +|+++|++++.|=+  .++  |+   .+-.+  .
T Consensus       200 a~~le~~i~~~g--~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~---~FA~e~~g  274 (449)
T COG0161         200 ADELEALILEHG--PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK---MFACEHAG  274 (449)
T ss_pred             HHHHHHHHHhcC--cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch---hhhhhhcC
Confidence            566777776421  012 25666677777788877754 3   33 68999999999953  333  22   12222  2


Q ss_pred             CCCcEEEEccccc--CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          295 VRPDFLICSFYQI--FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       295 ~~~Dflv~S~hK~--fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      ..||+++++  |-  -|+  .=+|+.++++.+.+.+.... +|..                                -.|
T Consensus       275 i~PDi~~~a--KGLT~GY--~Pl~a~l~~~~I~~~~~~~~-~~~f--------------------------------~HG  317 (449)
T COG0161         275 IVPDILCLA--KGLTGGY--LPLSAVLTSDRIYEAFSDGD-AGAF--------------------------------MHG  317 (449)
T ss_pred             CCCCeeeec--ccccccc--hhhHhHhhhHHHHHHHhccc-CCee--------------------------------ccC
Confidence            469999886  53  232  12677777777765443221 1110                                011


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      -.-...+++-+            .++                         +-|+.+++   +.+.+|++.+..+|.++|
T Consensus       318 ~TYsghPlacA------------aAl-------------------------a~L~i~e~---e~l~~~~~~~~~~l~~~L  357 (449)
T COG0161         318 HTYSGNPLACA------------AAL-------------------------ANLDILEE---EDLLERVAEIGAYLQAGL  357 (449)
T ss_pred             CccccCHHHHH------------HHH-------------------------HHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence            10011122211            011                         35666654   455667788888888888


Q ss_pred             hc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCcc-----CHHHHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454          453 MK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKI-----EPVLVQKLADRENISLSYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       453 ~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v-----~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~  526 (603)
                      .+ +.     +.|.|   |.-  ..+|-+.++-+...++...     -...+.+.+-++|+.+|..              
T Consensus       358 ~~~l~-----~~p~V---gdV--R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~--------------  413 (449)
T COG0161         358 QAALA-----DHPLV---GDV--RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL--------------  413 (449)
T ss_pred             HHhcc-----cCCcE---EEe--eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec--------------
Confidence            87 43     12333   211  1345666666655443221     0123455555677777632              


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                                + .+|=+++-+--|.|||+++++.+++-|+..
T Consensus       414 --------------------------g-~~i~~~PPliit~~eid~l~~~l~~al~~~  444 (449)
T COG0161         414 --------------------------G-DVIYLMPPLIITREEIDELVDALREALDET  444 (449)
T ss_pred             --------------------------C-CEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence                                      0 267788889999999999999999988763

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=95.77  E-value=0.0041  Score=66.90  Aligned_cols=100  Identities=14%  Similarity=0.023  Sum_probs=73.8

Q ss_pred             HHHHcCCEEEEEec--cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc-HHHHH-HHHhCCcEEEEecc
Q 007454          205 TSEKRGARVMSAEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP-YLWMR-IAQENDWHILIDAC  280 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~--~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p-l~~i~-~a~e~g~~vlvDAa  280 (603)
                      +....|.++..++.  .......+.+.+++.|...   .+...|.++++.|-+-|...| +..|+ +|+++|+..+|-.|
T Consensus       117 ai~~AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~---G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnA  193 (389)
T PF05889_consen  117 AIERAGLEPVVVENVLEGDELITDLEAIEAKIEEL---GADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNA  193 (389)
T ss_dssp             HHHHTT-EEEEE-EEEETTEEEEHHHHHHHHHHHH---CGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGT
T ss_pred             HHHhcCCeEEEeeccCCCCeeeccHHHHHHHHHHh---CCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccc
Confidence            34556888888874  2234556788888888642   235799999999999999999 88775 89999999999998


Q ss_pred             ccC---------------CCCCCCCCCCCCCCcEEEEcccccCC
Q 007454          281 ALG---------------PKDMDSFGLSLVRPDFLICSFYQIFG  309 (603)
Q Consensus       281 q~~---------------~~~m~~ldls~~~~Dflv~S~hK~fG  309 (603)
                      =.+               |.  .+++++..+.||++-++||+..
T Consensus       194 YgvQ~~~~~~~i~~a~~~GR--vda~vqS~dkNF~VPvGgai~A  235 (389)
T PF05889_consen  194 YGVQSSKCMHLIQQAWRVGR--VDAFVQSTDKNFMVPVGGAIMA  235 (389)
T ss_dssp             TTTT-HHHHHHHHHHHHHST--CSEEEEEHHHHHCEESSHEEEE
T ss_pred             hhhhHHHHHHHHHHHHhcCC--cceeeeecCCCEEecCCCcEEE
Confidence            777               87  6888888899999999999543

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=95.28  E-value=0.15  Score=54.51  Aligned_cols=101  Identities=16%  Similarity=0.174  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHcCCC------CCcEEEecc-CchHHHHHH---------------------HHHHcCCEEEEEec-cCCcc
Q 007454          173 SAMKKRIMDFLNIS------ENDYVYDYE-SEAVEAMIR---------------------TSEKRGARVMSAEF-SWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~lna~------~~e~vf~~e-s~sV~~~~~---------------------~a~~~Ga~V~~~~~-~~~~g  223 (603)
                      ..||++||+++|-+      +++++.+.. ++++.-.+.                     .|.-.|.+|++..+ ...+.
T Consensus       106 ~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~w  185 (447)
T KOG0259|consen  106 LPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDW  185 (447)
T ss_pred             HHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccc
Confidence            47999999998854      445554422 233332222                     23446777887765 22345


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEec
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDA  279 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDA  279 (603)
                      +||++.++.++.+      +|.-+++---+|..|.+|+.+   .+ +.|++.|+.|+-|=
T Consensus       186 eIDL~~veal~DE------NT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDE  239 (447)
T KOG0259|consen  186 EIDLDGVEALADE------NTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADE  239 (447)
T ss_pred             eechHHHHHhhcc------CeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehh
Confidence            8999999999975      677777777899999999986   33 36899999999985

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=94.52  E-value=3.4  Score=43.30  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=60.3

Q ss_pred             CCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCCCCCCCCCC----CCCcE-EEEcccccCCCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKDMDSFGLSL----VRPDF-LICSFYQIFGENP  312 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~m~~ldls~----~~~Df-lv~S~hK~fG~~P  312 (603)
                      ..++.++|+--.|.||.+.-=+++    ++|+++|+.+++|-+-.+|-  -.+..++    |+... +++|.-|..- |-
T Consensus       178 e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PF--P~iifsd~~~~w~~NiilC~SLSK~GL-PG  254 (417)
T COG3977         178 ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPF--PGIIFSDATPLWNENIILCMSLSKLGL-PG  254 (417)
T ss_pred             cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCC--CceecccccccCCCCEEEEeehhhcCC-CC
Confidence            479999999999999998776654    25899999999999877765  2344443    45554 5667778543 32


Q ss_pred             CceEEEEEeCCCCcCcC
Q 007454          313 SGFGCLFVKKSTVPILV  329 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~  329 (603)
                      .-+|..+....++..+.
T Consensus       255 ~R~GIiIane~viqait  271 (417)
T COG3977         255 SRCGIIIANEKVIQAIT  271 (417)
T ss_pred             cceeEEEccHHHHHHHH
Confidence            34788887777765444

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=94.38  E-value=3.1  Score=45.77  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             CHHHHHHHHhhcCCCCCC-eeEEEEeCccccccccccHH----HH-HHHHhCCcEEEEeccc------cCCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQ-RGLFVFPLHSRMTGARYPYL----WM-RIAQENDWHILIDACA------LGPKDMDSFGLS  293 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~-t~Lv~~~~~Sn~TG~~~pl~----~i-~~a~e~g~~vlvDAaq------~~~~~m~~ldls  293 (603)
                      |.+.|++++...   ..+ ..+++=|.+.| -|.+.|-+    .+ ++++++|+.+++|=+=      ++|-. .-.+  
T Consensus       186 D~~al~~~~~~~---g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq-~~~g--  258 (432)
T COG0001         186 DLEALEEAFEEY---GDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQ-GYYG--  258 (432)
T ss_pred             CHHHHHHHHHHc---CCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccc-cccC--
Confidence            678888888752   123 35666677777 68888865    23 3689999999999542      22221 1222  


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                       ..||+.++  =|+.|+ --=+|++-.|+++++.+.|
T Consensus       259 -i~PDlttl--GKiIGG-GlP~ga~gGr~eiM~~~~p  291 (432)
T COG0001         259 -VEPDLTTL--GKIIGG-GLPIGAFGGRAEIMEQLAP  291 (432)
T ss_pred             -cCcchhhh--hhhhcC-CcceeeeccHHHHHhhhCC
Confidence             35888765  487653 1127899899999876554

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=94.20  E-value=2.6  Score=43.32  Aligned_cols=67  Identities=12%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHh--CCcEEEEecc
Q 007454          209 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQE--NDWHILIDAC  280 (603)
Q Consensus       209 ~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e--~g~~vlvDAa  280 (603)
                      .+++|+-+|.. |+..++.+.+.+.+..+    ...+++-++.-.|.||.+...+-|...-|  -+..|+||-|
T Consensus       131 Nd~eVvkvpl~-pdF~lnvdai~evl~~d----s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEA  199 (375)
T KOG0633|consen  131 NDAEVVKVPLN-PDFSLNVDAIAEVLELD----SKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEA  199 (375)
T ss_pred             CCceEEEecCC-CCccccHHHHHHHHhcc----ccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeee
Confidence            47899999987 78889999998888743    35788889999999999999986654433  3578888864

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=93.39  E-value=1.9  Score=46.62  Aligned_cols=82  Identities=15%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             eeEEEEeCccccccccccHH----HH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          244 RGLFVFPLHSRMTGARYPYL----WM-RIAQENDWHILIDACALG----PKDMDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~----~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                      ..-|..-..+-+-|++.+..    .+ +.++++|..++.|=+|.+    |+ |--++-...-||.++.  -|-.|. -.=
T Consensus       213 vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~-~wgfe~h~v~PDIvTm--AKgiGn-G~P  288 (442)
T KOG1404|consen  213 VAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH-MWGFESHGVVPDIVTM--AKGIGN-GFP  288 (442)
T ss_pred             eeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc-cccccccCCCccHHHH--HhhccC-CCc
Confidence            44444445556778888754    33 357899999999998866    32 3333333445787654  476552 233


Q ss_pred             eEEEEEeCCCCcCcC
Q 007454          315 FGCLFVKKSTVPILV  329 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~  329 (603)
                      +|+.+..+++.+.|.
T Consensus       289 l~AVvtt~EIa~v~~  303 (442)
T KOG1404|consen  289 LGAVVTTPEIADVLN  303 (442)
T ss_pred             ceeeecCHHHHHHHH
Confidence            788888777765554

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=92.73  E-value=0.85  Score=51.88  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc-----CCCCCCceEE
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI-----FGENPSGFGC  317 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~-----fG~~P~G~G~  317 (603)
                      -.||-+|.   .-|.+.|+..+ +.|+.+|.+|++ |+-+..-.|. =.-.++++|..+.|..++     ||+ | ..|+
T Consensus       250 gvlvQYP~---t~G~i~d~~el~~~a~~~~s~vv~-atDLLaLtiL-rpPgefGaDIavGSsQRFGVPlGYGG-P-HAaF  322 (1001)
T KOG2040|consen  250 GVLVQYPD---TEGSVLDFDELVELAHANGSLVVM-ATDLLALTIL-RPPGEFGADIAVGSSQRFGVPLGYGG-P-HAAF  322 (1001)
T ss_pred             EEEEEcCC---CCCcccCHHHHHHHhhccCceEEE-eehhhHHHcc-CChhhcCceeeeccccccCccccCCC-c-hHHH
Confidence            35666665   47999999854 689999999655 4434332111 112368999999999996     343 2 3556


Q ss_pred             EEEeCCCC
Q 007454          318 LFVKKSTV  325 (603)
Q Consensus       318 L~vkk~~~  325 (603)
                      +.++.++.
T Consensus       323 fAv~~~l~  330 (1001)
T KOG2040|consen  323 FAVSESLV  330 (1001)
T ss_pred             HHHHHHHH
Confidence            66665543

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=92.73  E-value=2.6  Score=44.38  Aligned_cols=108  Identities=19%  Similarity=0.239  Sum_probs=65.3

Q ss_pred             HHHcCCE-EEEEeccC--CccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-cccccccccHH-HHHHH---HhCCcEEEE
Q 007454          206 SEKRGAR-VMSAEFSW--PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYL-WMRIA---QENDWHILI  277 (603)
Q Consensus       206 a~~~Ga~-V~~~~~~~--~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~pl~-~i~~a---~e~g~~vlv  277 (603)
                      .++.|+. |..-++ |  ..-.+|.+.+..-|..    .+...++.+.+. .|.||.-..=+ |..+|   ++.+-..+.
T Consensus       142 f~~aGf~tv~~Y~y-Wd~~~k~~d~e~~Lsdl~~----APe~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fF  216 (410)
T KOG1412|consen  142 FEKAGFTTVATYPY-WDAENKCVDLEGFLSDLES----APEGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFF  216 (410)
T ss_pred             HHHcCCceeeeeee-ecCCCceecHHHHHHHHhh----CCCCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeee
Confidence            4566743 333332 3  2345676666666653    234566666655 89999855544 87654   567888899


Q ss_pred             ecc-ccCCCCCCCCCCCCC--------CCc-EEEEcccccCCCCCCceEEEEE
Q 007454          278 DAC-ALGPKDMDSFGLSLV--------RPD-FLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       278 DAa-q~~~~~m~~ldls~~--------~~D-flv~S~hK~fG~~P~G~G~L~v  320 (603)
                      |-+ |-...  ..+|-+.|        +.. |++=||-|=||.+-.-+|+|-|
T Consensus       217 DiAYQGfAS--GD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltv  267 (410)
T KOG1412|consen  217 DIAYQGFAS--GDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTV  267 (410)
T ss_pred             ehhhccccc--CCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEE
Confidence            976 55544  34444332        333 5666999977744446888754

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=92.58  E-value=0.79  Score=49.01  Aligned_cols=82  Identities=13%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             eEEEEeCccccccccccH-HHH----HHHHhCCcEEEEeccccCC-CC--CCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          245 GLFVFPLHSRMTGARYPY-LWM----RIAQENDWHILIDACALGP-KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl-~~i----~~a~e~g~~vlvDAaq~~~-~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                      .+++=|.+. ..|.+.|= +++    ++|+++|+++++|=+|.+- ..  +-..+...+.||+++++  |-+|+. --+|
T Consensus       180 avivEPi~g-~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~g--K~l~gG-~p~s  255 (339)
T PF00202_consen  180 AVIVEPIQG-EGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFG--KGLGGG-LPIS  255 (339)
T ss_dssp             EEEEESSBT-TTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEE--GGGGTT-SSEE
T ss_pred             EEEEecccc-ccCccccccchhhehcccccccccceecccccccccccCCccceecccccCcccccc--cchhhh-hhcc
Confidence            445555444 46776653 343    3689999999999877642 21  11122234679999998  865431 2389


Q ss_pred             EEEEeCCCCcCcCC
Q 007454          317 CLFVKKSTVPILVD  330 (603)
Q Consensus       317 ~L~vkk~~~~~L~p  330 (603)
                      ++++++++++.+.+
T Consensus       256 av~~~~~i~~~~~~  269 (339)
T PF00202_consen  256 AVLGSEEIMEAFQP  269 (339)
T ss_dssp             EEEEEHHHHTTSCT
T ss_pred             cccccchhhccccc
Confidence            99999988765543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=89.44  E-value=1.7  Score=47.43  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=57.8

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC----CCCeeEEEEeCccccccccccHH----HHHHHHhCCc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK----KKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDW  273 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~----~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~  273 (603)
                      .++..+..|+++..++.+  .--++.+.|++.+...+..    .+..-|.++|.-.|.||..++++    ++.+||+++.
T Consensus       161 AL~s~~a~gv~~ipv~md--~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDf  238 (472)
T KOG0634|consen  161 ALQSMEALGVKIIPVKMD--QDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDF  238 (472)
T ss_pred             HHHhccccCceEEecccc--CCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCE
Confidence            345556779777777665  3457899999988753211    22457999999999999999996    3468999999


Q ss_pred             EEEEecc
Q 007454          274 HILIDAC  280 (603)
Q Consensus       274 ~vlvDAa  280 (603)
                      +++-|=.
T Consensus       239 LIVeDdp  245 (472)
T KOG0634|consen  239 LIVEDDP  245 (472)
T ss_pred             EEEecCc
Confidence            9998853

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=88.91  E-value=2.4  Score=45.34  Aligned_cols=97  Identities=20%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH--HH----HHHHhCCcEEEEeccccCCCC----CCCCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL--WM----RIAQENDWHILIDACALGPKD----MDSFG  291 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~--~i----~~a~e~g~~vlvDAaq~~~~~----m~~ld  291 (603)
                      .|.+|.++|+++|....  ..+.-.++.+.-+|..| =||+.  -|    ++|+++++.|+.|||-.+--.    +..-+
T Consensus       166 KGd~D~~kLe~lidevG--~~nvp~I~~tiT~Nsag-GQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g  242 (471)
T COG3033         166 KGNFDLEKLERLIDEVG--ADNVPYIVLTITNNSAG-GQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG  242 (471)
T ss_pred             CCccCHHHHHHHHHHhC--cccCcEEEEEEeccccC-CCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc
Confidence            37799999999998531  22455666666666555 35654  23    268999999999997554210    11222


Q ss_pred             CCC-----------CCCcEEEEccccc-CCCCCCceEEEEEeCCC
Q 007454          292 LSL-----------VRPDFLICSFYQI-FGENPSGFGCLFVKKST  324 (603)
Q Consensus       292 ls~-----------~~~Dflv~S~hK~-fG~~P~G~G~L~vkk~~  324 (603)
                      -..           .-+|-.+.|+-|= +-  +. -|+|-.|.+.
T Consensus       243 Yrd~sI~~IarEm~sYaD~~~mS~KKD~lv--nm-GGfl~~~D~~  284 (471)
T COG3033         243 YRDWSIEEIAREMYSYADGCTMSAKKDGLV--NM-GGFLCFKDDS  284 (471)
T ss_pred             cccccHHHHHHHHHhhhhhheeecccccee--cc-ccEEEecCcc
Confidence            222           2488999999983 22  22 1455566653

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=82.61  E-value=12  Score=40.54  Aligned_cols=109  Identities=16%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHcCC------CCCcEEEecc-CchHHHHHHHHH---HcC-------------------CEEEEEeccC-
Q 007454          171 LESAMKKRIMDFLNI------SENDYVYDYE-SEAVEAMIRTSE---KRG-------------------ARVMSAEFSW-  220 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna------~~~e~vf~~e-s~sV~~~~~~a~---~~G-------------------a~V~~~~~~~-  220 (603)
                      -++-+|+.||+|+-.      +|++|..+.. |.++..+....-   +.|                   +..+.--++. 
T Consensus       114 Gv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe  193 (475)
T KOG0258|consen  114 GVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEE  193 (475)
T ss_pred             CChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCcccceeeccc
Confidence            356789999999864      3455544432 445554443321   112                   1111111111 


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecc
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDAC  280 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAa  280 (603)
                      .+..++.++|++.+..-+ +.-+.++.++----|.||.++.-+-|    ..|++.|..++-|-+
T Consensus       194 ~~W~ld~~el~~~~~eA~-k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEV  256 (475)
T KOG0258|consen  194 SNWSLDVAELERSVDEAR-KGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEV  256 (475)
T ss_pred             cCCCCCHHHHHHHHHHHh-ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHH
Confidence            233678999999987643 22355666666667999999887533    458899999999975

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=82.59  E-value=53  Score=35.48  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=50.4

Q ss_pred             CHHHHHHHHhhcCCC-CCCeeEEEEeCccccccccc--c--HHHHH-HHHhCCcEEEEeccccCCCC------CCCCCCC
Q 007454          226 NSEKLRKMVVSKGKK-KKQRGLFVFPLHSRMTGARY--P--YLWMR-IAQENDWHILIDACALGPKD------MDSFGLS  293 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~-~~~t~Lv~~~~~Sn~TG~~~--p--l~~i~-~a~e~g~~vlvDAaq~~~~~------m~~ldls  293 (603)
                      |+++.+.+|...+++ .+-.++++=|-|| +-|--+  |  .+.+. +++++|+-++||-+|.++-.      ..-.+|+
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQs-EGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~  332 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQS-EGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD  332 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhc-cCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence            567788888764433 3456788888887 344322  2  23443 68999999999999877531      0235554


Q ss_pred             CCCCcEEEEc
Q 007454          294 LVRPDFLICS  303 (603)
Q Consensus       294 ~~~~Dflv~S  303 (603)
                       ..||+++||
T Consensus       333 -~PpD~vTFS  341 (484)
T KOG1405|consen  333 -SPPDVVTFS  341 (484)
T ss_pred             -CCccceehh
Confidence             479999987

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=81.83  E-value=87  Score=34.43  Aligned_cols=98  Identities=17%  Similarity=0.209  Sum_probs=61.7

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH--HH----HHHHhCCcEEEEeccccC-CCCCCCCCCC---CC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL--WM----RIAQENDWHILIDACALG-PKDMDSFGLS---LV  295 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~--~i----~~a~e~g~~vlvDAaq~~-~~~m~~ldls---~~  295 (603)
                      |+++|++.+..++.  .=-.+++=|.| -.-| +.|++  .+    .+|+++|+.|+.|=.|.+ +.. ..+-..   ..
T Consensus       192 d~t~l~k~~~~h~~--~IaAVIvEPiq-GaGG-~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~-g~~~a~e~~~~  266 (433)
T KOG1401|consen  192 DSTALEKLFESHKG--EIAAVIVEPIQ-GAGG-IIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRL-GYGWAQEYFGV  266 (433)
T ss_pred             CHHHHHHHHHhCCC--ceEEEEEeccc-CCCC-cccCCHHHHHHHHHHHhhcCceEEeehhhhCcccc-chHHHHHHhCc
Confidence            68899999986421  11356666666 3344 45553  22    268899999999998876 431 111111   14


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDN  331 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~  331 (603)
                      .||.+++  =|.+|+ --=+|+..++..+++.+.|.
T Consensus       267 ~PDI~t~--aK~L~g-GlPigA~~v~~kV~~~i~~~  299 (433)
T KOG1401|consen  267 TPDITTV--AKPLGG-GLPIGATGVRDKVAEMISPG  299 (433)
T ss_pred             CCcceee--hhhccC-CceeEEEeehHHHHhhcCCC
Confidence            6897765  465543 12389999999998777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	603
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 84/539 (15%), Positives = 165/539 (30%), Gaps = 135/539 (25%)

Query: 132 PSHLRPSLPSQNLD-IPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY 190
               +  L  + +D I    +  K     T  L     S  E  ++K + + L I   +Y
Sbjct: 39  QDMPKSILSKEEIDHI----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NY 91

Query: 191 VYDYESEAVEAMIRTSEKRGARVMSAEFSWPRLRI--NSEKLRKMVVSKGKKKK------ 242
            +          I+T E+R   +M+  +   R R+  +++   K  VS+ +         
Sbjct: 92  KFLMSP------IKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 243 ---QRGLFVFPLHSRMTGA-----------------RYPY--LWMRIAQENDWHILIDA- 279
              +    V  +   + G+                 +  +   W+ +   N    +++  
Sbjct: 145 LELRPAKNVL-IDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 280 ---CALGPKDMDSFGLSLVRPDFLICSFYQ---IFGENPSGFGCLFVKKSTVPILVDNTS 333
                    +  S           I S         ++     CL V        + N  
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--------LLNVQ 254

Query: 334 SGMVSLLPAKKQLWLTDEFS-SCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ 392
           +          + W  + F+ SC+     T++ KQ     +   +  +S++      L  
Sbjct: 255 N---------AKAW--NAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMT-LTP 300

Query: 393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS---RRGRCLI-NWL 448
                    E  S+  K  +                 +   L++I+   R G     NW 
Sbjct: 301 --------DEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLATWDNWK 348

Query: 449 VNALMKLQHPNTEGNALVKIYGPKIR--FDRGPALAFNVFD-------------W---KR 490
                KL       ++L  +   + R  FD       +VF              W    +
Sbjct: 349 HVNCDKLTT--IIESSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 491 EKIEPVLVQ----KLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR 546
             +  V+ +     L +++    +  S+  I+   K + E +  L ++  +      N  
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVD----HYNIP 456

Query: 547 KDKANLGITVVTAS------LGY-LANFEDVYRLWAFVAQFLDADFVE-KARWRYTALD 597
           K   +  +            +G+ L N E   R+  F   FLD  F+E K R   TA +
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 46/346 (13%), Positives = 100/346 (28%), Gaps = 98/346 (28%)

Query: 5   CLREVSQAC-LCTHG--GCCPSPFFSLSPDPLHKVSKSRNTSADCRRDFAAVTASSIF-- 59
            L E+  A  +   G  G   +    ++ D         +    C+ DF       IF  
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKT---WVALDVC------LSYKVQCKMDFK------IFWL 187

Query: 60  -------PDTQFTNHESL-----PSLQQSLTEFTKAYPQYFDTYQIDQIR---AKEYYQL 104
                  P+T     + L     P+     ++ +        + Q  ++R     + Y+ 
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQ-AELRRLLKSKPYEN 245

Query: 105 SL------SNHTCLDYFGIG---LF---------SYNQLHKQESSPSHLRPSL-PSQNLD 145
            L       N    + F +    L            +       S  H   +L P +   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 146 IPFFS--VSYKTGNLKTQLLHGGQESGLESAM-KKRIMDFLNISENDYVYDYESEAVEAM 202
           +      +  +  +L  ++L     +    ++  + I D L   +N + +    + +  +
Sbjct: 306 L--LLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDN-WKH-VNCDKLTTI 358

Query: 203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY 262
           I +S                  +   + RKM            L VFP  + +       
Sbjct: 359 IESSLNV---------------LEPAEYRKMFDR---------LSVFPPSAHIPTILLSL 394

Query: 263 LWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIF 308
           +W  + + +   ++          +  + L   +P     S   I+
Sbjct: 395 IWFDVIKSDVMVVV--------NKLHKYSLVEKQPKESTISIPSIY 432

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 48.4 bits (114), Expect = 6e-07
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 17/45 (37%)

Query: 450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE 494
            AL KLQ       +L K+Y      D  PALA          +E
Sbjct: 20  QALKKLQ------ASL-KLYAD----DSAPALAIKA------TME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	603
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	100.0
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	100.0
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.98
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.98
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.97
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.97
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.97
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.97
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.96
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.96
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.96
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.95
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.95
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.95
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.95
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.94
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.94
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.94
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.94
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.93
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.92
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.92
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.91
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.91
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.91
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.9
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.9
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.9
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.9
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.89
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.89
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.89
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.89
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.88
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.87
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.85
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.84
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.84
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.84
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.83
1svv_A	359	Threonine aldolase; structural genomics, structura	99.83
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.83
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.83
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	99.83
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.83
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.82
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.82
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.82
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.82
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.81
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.81
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.81
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.8
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.8
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.8
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.8
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.79
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.79
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.79
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.79
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.79
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.78
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.78
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.78
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.78
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.77
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.77
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.76
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.76
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.76
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.75
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.75
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.75
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.75
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.75
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.74
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.74
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.74
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.74
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.74
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.74
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.74
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.74
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.73
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.73
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.73
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.73
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.72
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.72
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.72
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.72
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.72
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.72
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.72
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.72
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.72
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.72
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.72
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.72
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.71
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.71
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.71
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.71
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.71
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.71
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.7
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.7
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.7
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.69
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.69
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.69
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.69
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.69
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.69
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.69
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.68
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.68
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.68
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.68
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.68
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.67
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.67
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.67
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.67
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.66
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.66
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.65
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.65
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.65
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.65
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.65
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.64
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.64
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.64
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.63
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.63
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.63
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.63
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.63
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.62
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.62
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.62
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.62
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.62
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.61
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.6
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.6
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.6
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.6
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.59
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.59
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.59
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.59
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.58
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.58
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.57
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.56
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.56
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.55
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.55
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.55
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.54
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.54
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.54
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.54
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.53
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.52
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.51
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.5
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.48
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.47
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.47
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.47
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.47
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.46
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.46
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.45
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.44
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.42
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.42
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.41
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.4
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.4
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.4
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.39
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.39
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.39
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.38
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.37
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.37
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.37
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.36
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.35
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.35
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.33
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.32
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.31
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.29
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.27
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.27
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.27
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.26
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.25
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	98.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.24
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.24
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.24
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.22
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.19
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.16
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.15
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.12
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.11
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.03
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.03
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	98.86
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	98.69
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	98.64
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	98.43
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.4
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.38
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.36
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	97.6
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	97.6
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	97.03
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	95.93

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=100.00  E-value=1.7e-38  Score=341.12  Aligned_cols=323  Identities=10%  Similarity=0.065  Sum_probs=228.4

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc---cccchHHHHHHHHHHHHHHHcCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL---LHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~---~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++|||++|++++|++|++++..++..                   ..+|++|.+   ..+..+.++++++|++|+++||+
T Consensus        27 ~~yl~~agpt~~p~~V~~a~~~~~~~-------------------~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~   87 (386)
T 3qm2_A           27 QVFNFSSGPAMLPAEVLKLAQQELCD-------------------WHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNI   87 (386)
T ss_dssp             CCEECCSSSCCCCHHHHHHHTCC------------------------------------------CCHHHHHHHHHHHTC
T ss_pred             cCccccCCCCCCCHHHHHHHHHHHHh-------------------ccccCccccccCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            69999999999999999999876532                   236776642   23556688999999999999999


Q ss_pred             CC-CcEEEec-c-Cc------------------------hHHHHHHHHHHcCCEEEEEecc-CCccc-cCHHHHHHHHhh
Q 007454          186 SE-NDYVYDY-E-SE------------------------AVEAMIRTSEKRGARVMSAEFS-WPRLR-INSEKLRKMVVS  236 (603)
Q Consensus       186 ~~-~e~vf~~-e-s~------------------------sV~~~~~~a~~~Ga~V~~~~~~-~~~g~-i~~~~L~~~l~~  236 (603)
                      ++ .+++|.. . ++                        +.. +...+++.| +|.+++++ ...|. ++++++++.|. 
T Consensus        88 ~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~-  164 (386)
T 3qm2_A           88 PSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS-  164 (386)
T ss_dssp             CTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC-
T ss_pred             CCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC-
Confidence            65 5788831 1 11                        222 345567789 99999987 11343 55666655554 


Q ss_pred             cCCCCCCeeEEEEeCcccccccc-ccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGAR-YPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                           ++|+||++++.+|+||++ +|++.|.    +|++++|||+|.+|+  .|+|+++++  ++++|+|||+|  |+|+
T Consensus       165 -----~~t~lV~~~h~et~tG~~i~pi~~i~----~g~~~~vDa~qs~g~--~pidv~~~~--~~~~s~hK~lG--P~G~  229 (386)
T 3qm2_A          165 -----DNAAYLHYCPNETIDGIAIDETPDFG----PEVVVTADFSSTILS--APLDVSRYG--VIYAGAQKNIG--PAGL  229 (386)
T ss_dssp             -----TTCSCEEECSEETTTTEECCCCCCCC----TTCCEEEECTTTTTS--SCCCGGGCS--EEEEETTTTTC--CTTE
T ss_pred             -----CCCcEEEEECCcCCcCEecCchhhhc----CCCEEEEEcccccCC--CCCCccccC--EEEEecccccC--CCcc
Confidence                 479999999999999996 9998664    799999999999999  799999875  67899999998  9999


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |+||+|+++++.++|.. ..+..        |...      .+      ..  .+.||+|++++++++            
T Consensus       230 g~l~v~~~~~~~~~~~~-p~~~~--------~~~~------~~------~~--~~~gTp~v~~i~~l~------------  274 (386)
T 3qm2_A          230 TLVIVREDLLGKAHESC-PSILD--------YTVL------ND------ND--SMFNTPPTFAWYLSG------------  274 (386)
T ss_dssp             EEEEEEGGGCSCCCTTS-CGGGC--------HHHH------HH------C---------CCSHHHHHH------------
T ss_pred             EEEEECHHHHhhhcccC-CcHHH--------HHHH------hh------cC--CCCCCCcHHHHHHHH------------
Confidence            99999999987776531 11110        0000      00      11  357999999999998            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR  474 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~  474 (603)
                                                  +|++++.+. |++++.+|.+.|+++|+++|.++.        ++..+++.  
T Consensus       275 ----------------------------~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~--------~~~~~~~~--  316 (386)
T 3qm2_A          275 ----------------------------LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD--------FYRNDVAQ--  316 (386)
T ss_dssp             ----------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS--------SEECCBCG--
T ss_pred             ----------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC--------CcccCCCH--
Confidence                                        699999999 899999999999999999998862        12222221  


Q ss_pred             CCC-CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          475 FDR-GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       475 ~~r-g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                      ..| +.+++|++++.   .++..++++ ++++||.++.|..|                                      
T Consensus       317 ~~rs~~iv~f~~~~~---~~~~~~~~~-L~~~gI~~~~g~~~--------------------------------------  354 (386)
T 3qm2_A          317 ANRSRMNVPFQLADN---TLDKVFLEE-SFAAGLHALKGHRV--------------------------------------  354 (386)
T ss_dssp             GGBCSSEEEEEESSG---GGHHHHHHH-HHHTTEECCBCCTT--------------------------------------
T ss_pred             HHcCceEEEEECCCc---cccHHHHHH-HHHCCCEEeCCCCC--------------------------------------
Confidence            234 56999999862   134445555 57789998877544                                      


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          554 ITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .+.||+|++.+||.||||+|+++|++|..+
T Consensus       355 ~~~iRiS~~~~~t~edId~l~~~l~~~~~~  384 (386)
T 3qm2_A          355 VGGMRASIYNAMPIEGVKALTDFMIDFERR  384 (386)
T ss_dssp             TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            135999999999999999999999998754

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=332.83  Aligned_cols=327  Identities=11%  Similarity=0.116  Sum_probs=245.8

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc---ccccchHHHHHHHHHHHHHHHcCCC
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ---LLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~---~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      --||.+.++++|++|++++.+++..                   ..+|++|.   +..+..+.++++++|++|+++||++
T Consensus        14 ~~~n~at~~~~p~~Vl~a~~~~~~~-------------------~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~   74 (377)
T 3e77_A           14 GTENLYFQSMLPHSVLLEIQKELLD-------------------YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP   74 (377)
T ss_dssp             -CCCEECSCCCCHHHHHHHHHTSSS-------------------GGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccCCCCHHHHHHHHHHHHh-------------------cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999986542                   23677664   3335567899999999999999997


Q ss_pred             C-CcEEEecc--Cch-------------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          187 E-NDYVYDYE--SEA-------------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       187 ~-~e~vf~~e--s~s-------------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      + .+++|...  +.+                         -..+.+.+++.|+++.+++++|. +.+++++++..+    
T Consensus        75 ~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~-~~~~~~~~~~~i----  149 (377)
T 3e77_A           75 DNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS-YTKIPDPSTWNL----  149 (377)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS-SCSCCCGGGCCC----
T ss_pred             CCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC-cCCCCChHHhcc----
Confidence            6 57888421  000                         11235667778988888888764 334444544333    


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                        +++|+||++++.+|+||+++|+    +++++|++++|||+|.+|+  .|+|+++++  ++++|+|||+|  |.|+|+|
T Consensus       150 --~~~t~lV~~~h~et~tG~~~pi----i~~~~~~~~~vD~~q~~g~--~~id~~~~~--~~~~s~~K~~g--p~G~g~l  217 (377)
T 3e77_A          150 --NPDASYVYYCANETVHGVEFDF----IPDVKGAVLVCDMSSNFLS--KPVDVSKFG--VIFAGAQKNVG--SAGVTVV  217 (377)
T ss_dssp             --CTTCSCEEEESEETTTTEECSS----CCCCTTCCEEEECTTTTTS--SCCCGGGCS--EEEEEGGGTTS--CTTCEEE
T ss_pred             --CCCccEEEEeCccCchheEchh----hhccCCCEEEEEcccccCC--CCCchhhcC--EEEEecccccC--CCccEEE
Confidence              3579999999999999999999    4778999999999999999  799999876  69999999998  9999999


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      |+|+++++.++|.. .++..        |...      .+      ..  .+.||+|+.++++++               
T Consensus       218 ~~~~~~l~~~~~~~-p~~~~--------~~~~------~~------~~--~~~~Tp~v~~i~~l~---------------  259 (377)
T 3e77_A          218 IVRDDLLGFALREC-PSVLE--------YKVQ------AG------NS--SLYNTPPCFSIYVMG---------------  259 (377)
T ss_dssp             EEETTSCSCCCTTS-CGGGC--------HHHH------HT------TT--TCSSCCCHHHHHHHH---------------
T ss_pred             EEcHHHHhhccCCC-Cchhh--------HHHH------hh------cC--CCCCCchHHHHHHHH---------------
Confidence            99999987776532 12211        0000      00      11  357999999999998               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                               +|++++.+. |+++|.+|.+.|+++|+++|.+++     |   +.+ ++..+..|
T Consensus       260 -------------------------~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~-----g---~~~-~~~~~~~r  305 (377)
T 3e77_A          260 -------------------------LVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ-----G---FYV-CPVEPQNR  305 (377)
T ss_dssp             -------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----T---SEE-CCSCGGGB
T ss_pred             -------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC-----C---cee-cCCCHHHc
Confidence                                     699999999 899999999999999999999874     2   455 33222346


Q ss_pred             CC-EEEEEEccCCC-CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          478 GP-ALAFNVFDWKR-EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       478 g~-ivsFnv~~~~g-~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      .+ +++|++++.++ +.++..++..+ +++||.++.|..                                      ..+
T Consensus       306 s~~ivsf~~~~~~~~~~~~~~~l~~l-~~~Gi~~~~g~~--------------------------------------~~g  346 (377)
T 3e77_A          306 SKMNIPFRIGNAKGDDALEKRFLDKA-LELNMLSLKGHR--------------------------------------SVG  346 (377)
T ss_dssp             CSSEEEEEESSTTCCHHHHHHHHHHH-HHTTEESCBCCT--------------------------------------TTC
T ss_pred             CCcEEEEEcCCCCCchhHHHHHHHHH-HHCCcEEeCCCC--------------------------------------cCC
Confidence            55 69999999765 22323344444 468998876631                                      124


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .+|+|++.+||.|||++|+++|++|+.+
T Consensus       347 ~iRiS~~~~~t~edId~l~~al~~~~~~  374 (377)
T 3e77_A          347 GIRASLYNAVTIEDVQKLAAFMKKFLEM  374 (377)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999765

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=1e-36  Score=324.61  Aligned_cols=325  Identities=14%  Similarity=0.132  Sum_probs=245.1

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccc---ccchHHHHHHHHHHHHHHHcC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL---HGGQESGLESAMKKRIMDFLN  184 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~---~g~~~~~~~~~aR~~Ia~~ln  184 (603)
                      .++|+=++|++++|++|++++..++..                   ..+|++|.+.   .+..+.++++++|+.|+++||
T Consensus         4 ~~~~~f~pgpt~~~~~V~~a~~~~~~~-------------------~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~   64 (361)
T 3m5u_A            4 MRKINFSAGPSTLPLEILEQAQKELCD-------------------YQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYE   64 (361)
T ss_dssp             CCCEECCSSSCCCCHHHHHHHHHTSSS-------------------GGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             cceEeecCCCCCCcHHHHHHHHHHHHh-------------------cccCCceeeccCCCCHHHHHHHHHHHHHHHHHhC
Confidence            468989999999999999999886532                   2367777532   255678999999999999999


Q ss_pred             CCC-CcEEE-ecc---C---------------------chHHHHHHHHHHcCCEEEEEeccCCccc-cCHHHHHHHHhhc
Q 007454          185 ISE-NDYVY-DYE---S---------------------EAVEAMIRTSEKRGARVMSAEFSWPRLR-INSEKLRKMVVSK  237 (603)
Q Consensus       185 a~~-~e~vf-~~e---s---------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~-i~~~~L~~~l~~~  237 (603)
                      +++ .+++| +..   +                     -+.. +...+++.|++|.+++++|.... ++.++  + |.  
T Consensus        65 ~~~~~~v~f~t~~~T~a~n~~~~~~~~~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~--  138 (361)
T 3m5u_A           65 LNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTKK-AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FS--  138 (361)
T ss_dssp             CCTTEEEEEESSHHHHHHHHHHHHHCCSSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CC--
T ss_pred             CCCCceEEEEcCcHHHHHHHHHHhcCCCCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecccCcCCCcCChh--h-cC--
Confidence            974 58888 311   0                     0122 34567788999999999974321 34444  2 54  


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                          ++|+||++++.+|+||+++|.    +++ .|++++|||+|.+|+  .++|++.  +||+++|+|||+|  |.|+|+
T Consensus       139 ----~~t~lv~~~~~e~~tG~~~~~----i~~-~~~~~~vD~~q~~g~--~~id~~~--~d~~~~s~~K~~g--p~G~g~  203 (361)
T 3m5u_A          139 ----DNADYAYICSNNTIYGTQYQN----YPK-TKTPLIVDASSDFFS--RKVDFSN--IALFYGGVQKNAG--ISGLSC  203 (361)
T ss_dssp             ----TTSSEEEEESEETTTTEECSS----CCC-CSSCEEEECGGGTTS--SCCCCTT--EEEEEEETTTTSS--CTTCEE
T ss_pred             ----CCCCEEEEeCCCCCcceeCCc----ccc-cCCEEEEEcccccCC--CCCCccc--CCEEEEechhccC--CCccEE
Confidence                369999999999999999883    334 499999999999999  7999985  7999999999998  999999


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      ||+|+++++.++|...+++..        |...      .+      ..  .+.||+|++++++++              
T Consensus       204 l~~~~~~~~~~~~~~~p~~~~--------~~~~------~~------~~--~~~~Tp~v~~i~~l~--------------  247 (361)
T 3m5u_A          204 IFIRKDMLERSKNKQIPSMLN--------YLTH------AE------NQ--SLFNTPPTFAIYMFN--------------  247 (361)
T ss_dssp             EEEEHHHHHHHHTCCCCGGGC--------HHHH------HH------TT--TCSSCCCHHHHHHHH--------------
T ss_pred             EEEcHHHHhhhcCCCCCceee--------hHHH------hh------cC--CCCCCccHHHHHHHH--------------
Confidence            999999877666532222211        0000      00      01  357999999999998              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                +|++++.+. |+++|.+|.+.|+++|+++|.++.     |  +.+++++.. .+
T Consensus       248 --------------------------~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~-----g--~~~~~~~~~-~r  293 (361)
T 3m5u_A          248 --------------------------LEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSN-----G--FYKGHADKK-DR  293 (361)
T ss_dssp             --------------------------HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTST-----T--SEEESSCGG-GB
T ss_pred             --------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCC-----C--eeeccCCHH-Hc
Confidence                                      699999999 899999999999999999999873     1  246666432 23


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      .+.+++|++++..+  ++. .+.+.++++||.++.|..|                                      .+.
T Consensus       294 s~~ivsf~~~~~~~--~~~-~~~~~L~~~gI~~~~g~~~--------------------------------------~g~  332 (361)
T 3m5u_A          294 SLMNVSFNIAKNKD--LEP-LFVKEAEEAGMIGLKGHRI--------------------------------------LGG  332 (361)
T ss_dssp             CSSEEEEEESSCTT--HHH-HHHHHHHHTTEECCBCCTT--------------------------------------TCS
T ss_pred             CCeEEEEECCCchh--hhH-HHHHHHHHCCCEEecCCCc--------------------------------------cCe
Confidence            45699999987321  333 3445667889998877332                                      146


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ||+|++.|||.|||++|+++|++|+.+
T Consensus       333 iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          333 IRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998754

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=1.7e-31  Score=279.77  Aligned_cols=342  Identities=15%  Similarity=0.111  Sum_probs=254.3

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      +|||||+++++.++.+++++.+.+..                   ..+||++.+.++....+.++++|+.+++++|++++
T Consensus         1 ~iyld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~   61 (382)
T 4hvk_A            1 MAYFDYTSAKPVDERILEAMLPYMTE-------------------SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG   61 (382)
T ss_dssp             -CBCBTTTCCCCCHHHHHHHHHHHHT-------------------SCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred             CEeecCCCcCCCCHHHHHHHHHHHHh-------------------hcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence            48999999999999999998765431                   23566665555556678899999999999999888


Q ss_pred             cEEEecc-----------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          189 DYVYDYE-----------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       189 e~vf~~e-----------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +++++..                             +.+.......+++.|+++..++++ +++.++.++|++.|..   
T Consensus        62 ~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~---  137 (382)
T 4hvk_A           62 TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLRD---  137 (382)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBC-TTSCBCHHHHHHHCCT---
T ss_pred             eEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccC-CCCCcCHHHHHHHhcc---
Confidence            8876432                             223333333445679999999988 4788999999999863   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         ++++|++++.+|.||.+.|++.+ ++|+++|+ +++|+++..+.  .++++..+++|++++|+||+||  |.|+|++
T Consensus       138 ---~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~g~g~~  209 (382)
T 4hvk_A          138 ---DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGAL  209 (382)
T ss_dssp             ---TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTT--BCCCHHHHTCSEEEEESGGGTS--CTTCEEE
T ss_pred             ---CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCC--CCCCchhcCCCEEEEeHHHhcC--CCceEEE
Confidence               68999999999999999999865 58999999 99999999887  5788877889999999999998  8899999


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      +++++.  .+.+...+|..                          ...  ++.||++..+++++.               
T Consensus       210 ~~~~~~--~~~~~~~~~~~--------------------------~~~--~~~~~~~~~~~~~~~---------------  244 (382)
T 4hvk_A          210 WIRKEA--KLQPVILGGGQ--------------------------ENG--LRSGSENVPSIVGFG---------------  244 (382)
T ss_dssp             EEETTC--CCCCSSCSSCT--------------------------GGG--TSCSCCCHHHHHHHH---------------
T ss_pred             EEcCcc--CcCcccccCCC--------------------------cCc--cccCCcCHHHHHHHH---------------
Confidence            999876  36655544321                          011  468899998887765               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG  478 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg  478 (603)
                                               +++++... +++.+.++.+.++++|.+.|.+++        .++++++.. ...+
T Consensus       245 -------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~~~~  289 (382)
T 4hvk_A          245 -------------------------KAAEITAM-EWREEAERLRRLRDRIIDNVLKIE--------ESYLNGHPE-KRLP  289 (382)
T ss_dssp             -------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTST--------TEEECSCSS-SBCT
T ss_pred             -------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCcc-ccCC
Confidence                                     46665543 788999999999999999998753        378888752 2235


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      .++.|.+++.+     ...+.+.+.++||.++.|++|......+.     .++...+.       .     .....+.||
T Consensus       290 ~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~iR  347 (382)
T 4hvk_A          290 NNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMACGL-------K-----HEEAHGTLL  347 (382)
T ss_dssp             TEEEEEETTCC-----HHHHHHHHHHTTCBCBCC--------CCC-----HHHHHTTC-------C-----HHHHHTEEE
T ss_pred             CEEEEEECCCC-----HHHHHHHHHHCCEEEeeCCccCCCCCcch-----HHHHHcCC-------C-----hhhcCCeEE
Confidence            69999997644     34455666678999999999987643332     22222210       0     001136999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          559 ASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +|++.++|.|||+++++.|++++..
T Consensus       348 l~~~~~~t~e~i~~~~~~l~~~~~~  372 (382)
T 4hvk_A          348 LTLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=2.9e-31  Score=282.50  Aligned_cols=348  Identities=15%  Similarity=0.149  Sum_probs=260.6

Q ss_pred             hhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHH
Q 007454           91 YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG  170 (603)
Q Consensus        91 ~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~  170 (603)
                      .+++++|+ +||.+. ++.+|||+++.++.++.+++++.+.+..                   ..+|+++.+.+|.....
T Consensus        11 ~~~~~~r~-~fp~~~-~~~~~ld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~   69 (406)
T 3cai_A           11 YDVARVRG-LHPSLG-DGWVHFDAPAGMLIPDSVATTVSTAFRR-------------------SGASTVGAHPSARRSAA   69 (406)
T ss_dssp             CCHHHHHH-TCTTTT-SSCEECBGGGCCCCCHHHHHHHHHHHHH-------------------CCSSSCSSSHHHHHHHH
T ss_pred             ccHHHHHH-hhhhcC-CCeEEEeCCCcCCCCHHHHHHHHHHHHh-------------------cCCCCCCccHHHHHHHH
Confidence            36789997 699993 2589999999999999999998764321                   12456555555555567


Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEecc----------------------------CchH-HHHHHHHHHcCCEEEEEeccCC
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYE----------------------------SEAV-EAMIRTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~e----------------------------s~sV-~~~~~~a~~~Ga~V~~~~~~~~  221 (603)
                      .++++|+.|++++|+++++++|+..                            +.++ ..+...+++.|++++.++++..
T Consensus        70 ~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~  149 (406)
T 3cai_A           70 VLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE  149 (406)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            8899999999999998888877532                            1122 1222233446999999988734


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL  300 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dfl  300 (603)
                      ++.++.++|++.|..      ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..++  .++++..+++|++
T Consensus       150 ~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~  221 (406)
T 3cai_A          150 TGELPTWQWESLISK------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPY--RLLDIRETDADVV  221 (406)
T ss_dssp             TCCCCGGGHHHHCCT------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTT--CCCCHHHHCCSEE
T ss_pred             cCCcCHHHHHHHhCC------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCCCchhcCCCEE
Confidence            678899999998863      68999999999999999999865 58999999999999999887  5788777889999


Q ss_pred             EEcccccCCCCCCceE-EEEEeCCCCcCcCCCC--CCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          301 ICSFYQIFGENPSGFG-CLFVKKSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G-~L~vkk~~~~~L~p~~--~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++|+||+||  |. +| ++++++++.+.+++..  +|+.        .                  +..  ++.||+|+.
T Consensus       222 ~~s~~K~~g--~~-~G~~~~~~~~~~~~l~~~~~~~~~~--------~------------------~~~--~~~~t~~~~  270 (406)
T 3cai_A          222 TVNAHAWGG--PP-IGAMVFRDPSVMNSFGSVSTNPYAT--------G------------------PAR--LEIGVHQFG  270 (406)
T ss_dssp             EEEGGGGTS--CS-CEEEEESCHHHHHTSCCCCSCTTCC--------G------------------GGG--GCCSCCCHH
T ss_pred             EeehhhhcC--CC-cCeEEEEehHHHhhcCCcccCCCCC--------c------------------ccc--ccCCCccHH
Confidence            999999999  64 89 9999887766666542  1211        0                  112  468999999


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC--------------HHHHHHHHHH
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--------------LTMISRRGRC  443 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG--------------l~~i~~r~~~  443 (603)
                      +++++.                                        ++++++..+|              ++.+.++.+.
T Consensus       271 ~~~a~~----------------------------------------~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  310 (406)
T 3cai_A          271 LLAGVV----------------------------------------ASIEYLAALDESARGSRRERLAVSMQSADAYLNR  310 (406)
T ss_dssp             HHHHHH----------------------------------------HHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------------------------------HHHHHHHHhccccccchhhhhhhhHHHHHHHHHH
Confidence            887765                                        5778777766              7889999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454          444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY  523 (603)
Q Consensus       444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~  523 (603)
                      ++++|.+.|.+++        .+++++|.  ..+++++.|.+++.     +...+.+.+.++||.++.|+. .       
T Consensus       311 ~~~~l~~~L~~~~--------~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~~gi~v~~g~~-~-------  367 (406)
T 3cai_A          311 VFDYLMVSLRSLP--------LVMLIGRP--EAQIPVVSFAVHKV-----PADRVVQRLADNGILAIANTG-S-------  367 (406)
T ss_dssp             HHHHHHHHHHTCT--------TEEECCCC--SSBCSEEEEEETTB-----CHHHHHHHHHHTTEECEECCS-C-------
T ss_pred             HHHHHHHHHhcCC--------CeEEcCCc--cccCCEEEEEECCc-----CHHHHHHHHHHCCcEEecCCh-H-------
Confidence            9999999998753        27888774  24677999998753     334455555668999998861 1       


Q ss_pred             hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                           .++...+              .....+.||+|++.++|.|||+++++.|+++
T Consensus       368 -----~~~~~~g--------------~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~  405 (406)
T 3cai_A          368 -----RVLDVLG--------------VNDVGGAVTVGLAHYSTMAEVDQLVRALASL  405 (406)
T ss_dssp             -----HHHHHHT--------------TTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             -----HHHHHcC--------------CCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence                 1121111              0112368999999999999999999998753

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6.3e-31  Score=278.42  Aligned_cols=361  Identities=20%  Similarity=0.271  Sum_probs=269.0

Q ss_pred             hHHHHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccc
Q 007454           92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGG  166 (603)
Q Consensus        92 ~vd~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~  166 (603)
                      +++.+|+ +||.+..    ++.+|||+++.++.++.+++++.+.+..                   ..+|+++. +.++.
T Consensus         4 ~~~~~r~-~f~~~~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~   63 (406)
T 1kmj_A            4 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRH-------------------GYAAVHRGIHTLSA   63 (406)
T ss_dssp             CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHH-------------------TCCCCSSCSSHHHH
T ss_pred             CHHHHHH-hCcccccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-------------------hcCCCCCCcchHHH
Confidence            5788998 6999841    1479999999999999999988764321                   12445432 22333


Q ss_pred             hHHHHHHHHHHHHHHHcCC-CCCcEEEeccC-----------------------------chH-HHHHHHHHHcCCEEEE
Q 007454          167 QESGLESAMKKRIMDFLNI-SENDYVYDYES-----------------------------EAV-EAMIRTSEKRGARVMS  215 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna-~~~e~vf~~es-----------------------------~sV-~~~~~~a~~~Ga~V~~  215 (603)
                      .....+.+.|++|++++|+ ++++++|+...                             .++ ..+...++..|+++..
T Consensus        64 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~  143 (406)
T 1kmj_A           64 QATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRV  143 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence            3456788999999999999 67888764321                             111 2223345566888888


Q ss_pred             EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454          216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL  294 (603)
Q Consensus       216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~  294 (603)
                      ++++ +++.++.++|++.|..      ++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..
T Consensus       144 ~~~~-~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~--~~~~~~~  214 (406)
T 1kmj_A          144 IPLN-PDGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDVQA  214 (406)
T ss_dssp             ECBC-TTSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHH
T ss_pred             EecC-CCCCcCHHHHHHHhcc------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC--CCCcccc
Confidence            8887 3677899999998863      68999999999999999999855 58999999999999999887  5777777


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCc-eeccccc-cccccccccCCCCCCcccCcccccccccC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGM-VSLLPAK-KQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~-v~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      +++|++++|+||+||  |.|+|++++++++++.+.+...||+ +...... ...|  ..           .+..  ++.|
T Consensus       215 ~~~d~~~~s~~K~~g--~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~--~~~~  277 (406)
T 1kmj_A          215 LDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTW--TK-----------APWR--FEAG  277 (406)
T ss_dssp             HTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEE--CC-----------TTGG--GCCS
T ss_pred             cCCCEEEEEchhccC--CCCcEEEEEeHHHHhhcCCcccCCCceeeccccccccc--CC-----------Cchh--ccCC
Confidence            789999999999998  8899999999888777776655532 2211000 0001  00           0122  5789


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      |+++..++++.                                        ++++++.+.+++.+.++.+.+.++|.+.|
T Consensus       278 ~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L  317 (406)
T 1kmj_A          278 TPNTGGIIGLG----------------------------------------AALEYVSALGLNNIAEYEQNLMHYALSQL  317 (406)
T ss_dssp             SCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH----------------------------------------HHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999887765                                        57888776789999999999999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      .+++        .+++++|.   .+++++.|.+++.     +...+.+.+.++||.++.|..|.....           .
T Consensus       318 ~~~~--------~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~-----------~  370 (406)
T 1kmj_A          318 ESVP--------DLTLYGPQ---NRLGVIAFNLGKH-----HAYDVGSFLDNYGIAVRTGHHCAMPLM-----------A  370 (406)
T ss_dssp             TTST--------TEEEESCT---TCCSEEEEEETTC-----CHHHHHHHHHHTTEECEEECTTCHHHH-----------H
T ss_pred             hcCC--------CeEEecCC---CcCCEEEEEECCC-----CHHHHHHHHhhCCcEEEeccccchHHH-----------H
Confidence            8763        27888763   3689999998643     344566677788999999998875311           0


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ..                +. .+.||+|++.++|.+|++++++.|+++++
T Consensus       371 ~~----------------g~-~~~iRis~~~~~t~~~i~~~~~~l~~~~~  403 (406)
T 1kmj_A          371 YY----------------NV-PAMCRASLAMYNTHEEVDRLVTGLQRIHR  403 (406)
T ss_dssp             HT----------------TC-SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hc----------------CC-CCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence            00                11 26899999999999999999999999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.98  E-value=1.2e-30  Score=280.75  Aligned_cols=359  Identities=15%  Similarity=0.128  Sum_probs=254.9

Q ss_pred             HHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHH
Q 007454           97 RAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMK  176 (603)
Q Consensus        97 R~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR  176 (603)
                      |..+||++  .+.+|||+++.++.++.+++++.+.+..                   ..+||++.+..+....+.++++|
T Consensus         9 ~~~~~~~~--~~~~~Ld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~   67 (432)
T 3a9z_A            9 RGSVESPP--NRKVYMDYNATTPLEPEVIQAVTEAMKE-------------------AWGNPSSSYVAGRKAKDIINTAR   67 (432)
T ss_dssp             -----------CCEECBTTTCCCCCHHHHHHHHHHHHH-------------------CCSCTTCSSHHHHHHHHHHHHHH
T ss_pred             cccccCCC--CCcEEeeCCccCCCCHHHHHHHHHHHHH-------------------hcCCCccCcHHHHHHHHHHHHHH
Confidence            55679998  7899999999999999999998764321                   12556555544555677889999


Q ss_pred             HHHHHHcCCCCCcEEEeccC-chHHHHH----------------------------------------------HHHHHc
Q 007454          177 KRIMDFLNISENDYVYDYES-EAVEAMI----------------------------------------------RTSEKR  209 (603)
Q Consensus       177 ~~Ia~~lna~~~e~vf~~es-~sV~~~~----------------------------------------------~~a~~~  209 (603)
                      ++|++++|+++++++|+... +++..++                                              ..++..
T Consensus        68 ~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~  147 (432)
T 3a9z_A           68 ASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQ  147 (432)
T ss_dssp             HHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhc
Confidence            99999999988899887652 2322211                                              122335


Q ss_pred             CCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC----------cEEEEe
Q 007454          210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND----------WHILID  278 (603)
Q Consensus       210 Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g----------~~vlvD  278 (603)
                      |+++..+++++.++.++.++|++.|..      ++++|++++.+|.||.++|++.| ++|+++|          +++++|
T Consensus       148 g~~v~~v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livD  221 (432)
T 3a9z_A          148 VAEVTFVPVSKVNGQVEVEDILAAVRP------TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTD  221 (432)
T ss_dssp             SCEEEEECCCTTTSSCCHHHHHHTCCT------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             CcEEEEEecCcccCCcCHHHHHHhccC------CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEE
Confidence            889999998754778999999998863      68999999999999999999865 5899988          999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC-CcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454          279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET  357 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~  357 (603)
                      +++..+.  .++++..+++|++++|+||+||  |. +|+++++++. ...+.+.++||...                   
T Consensus       222 ea~~~~~--~~~~~~~~~~d~~~~s~~K~~g--~~-~G~~~~~~~~~~~~~~~~~~~~~~~-------------------  277 (432)
T 3a9z_A          222 AAQALGK--RRVDVEDLGVDFLTIVGHKFYG--PR-IGALYVRGVGKLTPLYPMLFGGGQE-------------------  277 (432)
T ss_dssp             CTTTTTT--SCCCHHHHCCSEEEEEGGGTTC--CS-CEEEEETTBTTTBCCCCSCCSSCGG-------------------
T ss_pred             chhhhCC--cccChhhcCCCEEEEehhHhcC--Cc-ceEEEEccccccCCcCceeecCCcc-------------------
Confidence            9998887  5778777789999999999998  76 9999999876 44566555554210                   


Q ss_pred             CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHH
Q 007454          358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMI  437 (603)
Q Consensus       358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i  437 (603)
                             ..  ++.||+|..+++++.                                        ++++++.+ +++++
T Consensus       278 -------~~--~~~~~~~~~~~~a~~----------------------------------------aal~~~~~-~~~~~  307 (432)
T 3a9z_A          278 -------RN--FRPGTENTPMIAGLG----------------------------------------KAADLVSE-NCETY  307 (432)
T ss_dssp             -------GG--TSCSCCCHHHHHHHH----------------------------------------HHHHHHHH-HHHHH
T ss_pred             -------cc--ccCCCcCHHHHHHHH----------------------------------------HHHHHHHh-hHHHH
Confidence                   11  467899988877665                                        57777665 68899


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccC
Q 007454          438 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHH  516 (603)
Q Consensus       438 ~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~  516 (603)
                      .++.+.++++|.+.|.++.     |. .+.+++|... ...+.+++|.+.+..   ++...+...+  .+|.++.|..|.
T Consensus       308 ~~~~~~~~~~l~~~L~~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~G~~~~  376 (432)
T 3a9z_A          308 EAHMRDIRDYLEERLEAEF-----GK-RIHLNSRFPGVERLPNTCNFSIQGSQ---LRGYMVLAQC--QTLLASVGASCH  376 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-----GG-GEEESSCCTTCCBCTTEEEEEECSTT---CCHHHHHHHC--SSEECBSSCGGG
T ss_pred             HHHHHHHHHHHHHHHHhcc-----CC-cEEEeCCCCcccCCCCEEEEEeCCCC---CcHHHHHHHh--cCeEEecccccc
Confidence            9999999999999998753     11 2566676311 123569999998642   1223333322  489999999997


Q ss_pred             ccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          517 IWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       517 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +......    ...+...+.       .     .....+.||+|++.++|.|||+++++.|++++.+
T Consensus       377 ~~~~~~~----~~~l~~~g~-------~-----~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~  427 (432)
T 3a9z_A          377 SDHEDRP----SPVLLSCGI-------P-----VDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ  427 (432)
T ss_dssp             GGGTTSC----CHHHHHTTC-------C-----HHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCc----cHHHHhcCC-------C-----ccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence            7432110    122222210       0     0011369999999999999999999999998753

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.98  E-value=4.1e-30  Score=270.36  Aligned_cols=342  Identities=15%  Similarity=0.104  Sum_probs=251.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      ++|||++++++.++.+++++.+.+..                   ..+|+++.+.++....+.+++.|+.|++++|++++
T Consensus         1 ~~yld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~   61 (382)
T 4eb5_A            1 MAYFDYTSAKPVDERILEAMLPYMTE-------------------SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG   61 (382)
T ss_dssp             -CBCBTTTCCCCCHHHHHHHHHHHHT-------------------SCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred             CeeeccCCCCCCCHHHHHHHHHHHHh-------------------ccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            48999999999999999998765321                   12566654444444567889999999999999888


Q ss_pred             cEEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          189 DYVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       189 e~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +++++...                             .++......+++.|++++.+++++ ++.++.++|++.|..   
T Consensus        62 ~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~---  137 (382)
T 4eb5_A           62 TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YGEVDVSFIDQKLRD---  137 (382)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TSCBCHHHHHHHCCT---
T ss_pred             eEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CCccCHHHHHHHhcC---
Confidence            88775321                             112122222234688899998874 788999999998863   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         ++++|++++.+|.||.++|++.+ ++|+++|++ ++|+++..+.  .++++..+++|++++|+||+||  |.|+|++
T Consensus       138 ---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~--~~~~~~~~~~di~~~s~sK~~g--~~g~G~~  209 (382)
T 4eb5_A          138 ---DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQ--IEVDVEKIGADMLTISSNDIYG--PKGVGAL  209 (382)
T ss_dssp             ---TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTT--BCCCHHHHTCSEEEEETGGGTC--CSSCEEE
T ss_pred             ---CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCC--cccCccccCCCEEEeehHHhcC--CCceEEE
Confidence               58999999999999999999865 589999999 9999998887  5677776789999999999998  8899999


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      +++++.  .+.+...||...                          ..  +..||++...++++.               
T Consensus       210 ~~~~~~--~l~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~~~~---------------  244 (382)
T 4eb5_A          210 WIRKEA--KLQPVILGGGQE--------------------------NG--LRSGSENVPSIVGFG---------------  244 (382)
T ss_dssp             EEETTC--CCCCSSCSSCTG--------------------------GG--TSCSCCCHHHHHHHH---------------
T ss_pred             EEcccc--ccCceecCCCcc--------------------------cc--ccCCCccHHHHHHHH---------------
Confidence            999874  244443332100                          11  356888888776654               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG  478 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg  478 (603)
                                               ++++++.+ +++.+.++.+.+++++.+.|.+++        .+++++|.. ...+
T Consensus       245 -------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~~~~  289 (382)
T 4eb5_A          245 -------------------------KAAEITAM-EWREEAERLRRLRDRIIDNVLKIE--------ESYLNGHPE-KRLP  289 (382)
T ss_dssp             -------------------------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTST--------TEEECSCSS-SBCT
T ss_pred             -------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHHhhCC--------CeEEeCCcc-cCCC
Confidence                                     57777655 688899999999999999998752        277887642 2347


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      +++.|.+++.+     ...+.+.+.++||.++.|..|.+....++     .++...+.       .     .....+.||
T Consensus       290 ~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~iR  347 (382)
T 4eb5_A          290 NNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPS-----HVLMACGL-------K-----HEEAHGTLL  347 (382)
T ss_dssp             TEEEEEETTSC-----HHHHHHHHHHHTCBCBCCCGGGTSSCCCC-----HHHHHTTC-------C-----HHHHTTEEE
T ss_pred             CEEEEEeCCcC-----HHHHHHHHHHCCEEEeccccccCCCCccc-----HHHHHcCC-------C-----hhccCCeEE
Confidence            79999987533     33444444568999999999877543332     22222110       0     001236999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          559 ASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +|++.++|.|||+++++.|+++++.
T Consensus       348 i~~~~~~~~~~i~~~~~~l~~~~~~  372 (382)
T 4eb5_A          348 LTLGRYNTDEDVDRLLEVLPGVIER  372 (382)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998865

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.97  E-value=6.5e-31  Score=286.75  Aligned_cols=366  Identities=11%  Similarity=0.069  Sum_probs=257.0

Q ss_pred             HHHHHHhhccCcC--------------CCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCcccccccccccc
Q 007454           93 IDQIRAKEYYQLS--------------LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNL  158 (603)
Q Consensus        93 vd~iR~~efp~L~--------------~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~  158 (603)
                      +..+|+ +|+...              .++.+|||+++.++.|+.+.+++.+.+..         |..       ...+.
T Consensus        39 l~~~r~-~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~~---------~~~-------~~~~~  101 (465)
T 3e9k_A           39 LRHFRE-CFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDK---------WAK-------IAAYG  101 (465)
T ss_dssp             TGGGGG-GEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHHH---------HHH-------HGGGG
T ss_pred             HHHHHH-hcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHHH---------HHh-------hCCcc
Confidence            445776 587663              13679999999999999887765543211         000       00111


Q ss_pred             CccccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc----------------------------CchHHH-HHHHHHHc
Q 007454          159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE----------------------------SEAVEA-MIRTSEKR  209 (603)
Q Consensus       159 ~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------------s~sV~~-~~~~a~~~  209 (603)
                      +....  .......+++|+++++++|+++++++|+..                            +.+... +...++..
T Consensus       102 ~~~~~--~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~  179 (465)
T 3e9k_A          102 HEVGK--RPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLH  179 (465)
T ss_dssp             GTSSS--SCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHT
T ss_pred             cccCC--ccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHc
Confidence            11000  012244567899999999999999977532                            122222 23345667


Q ss_pred             CCEE-----EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC
Q 007454          210 GARV-----MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG  283 (603)
Q Consensus       210 Ga~V-----~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~  283 (603)
                      |+++     ...+.+ .++.++.++|+++|...   ++++++|++++.+|.||.++|++.| ++|+++|++|++|++|..
T Consensus       180 G~~~~~~~v~~~~~~-~~~~~d~~~l~~~i~~~---~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~  255 (465)
T 3e9k_A          180 GLNIEESMRMIKPRE-GEETLRIEDILEVIEKE---GDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAV  255 (465)
T ss_dssp             TCCHHHHEEEECCCT-TCSSCCHHHHHHHHHHH---GGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             CCcceeeeEEEecCC-CCCccCHHHHHHHHHhc---CCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhc
Confidence            8774     334444 36778999999999731   1269999999999999999999966 589999999999999999


Q ss_pred             CCCCCCCCCCCCCCcEEEEcccccC-CCCCCceEEEEEeCCCCcCcCCCCCC--Cceeccc-cccccccccccCCCCCCc
Q 007454          284 PKDMDSFGLSLVRPDFLICSFYQIF-GENPSGFGCLFVKKSTVPILVDNTSS--GMVSLLP-AKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       284 ~~~m~~ldls~~~~Dflv~S~hK~f-G~~P~G~G~L~vkk~~~~~L~p~~~g--G~v~~~~-~~~~~~~~~~~~~~~~e~  359 (603)
                      |.  .++++..+++||+++|+||++ |+ |.|+|+++++++..+.+.+...|  |.....+ .....+.        .. 
T Consensus       256 g~--~~~~~~~~~~D~~~~s~~K~l~~g-p~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~-  323 (465)
T 3e9k_A          256 GN--VELYLHDWGVDFACWCSYKYLNAG-AGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQ--------LI-  323 (465)
T ss_dssp             TT--SCCCHHHHTCCEEEECSSSTTCCC-TTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCC--------BC-
T ss_pred             CC--cCCchhhcCCCEEEECcccccccC-CCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcC--------cC-
Confidence            98  789999999999999999998 34 88999999999988778776555  1100000 0000000        00 


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                        ..+.+  ++.||+|+.+++++.                                        ++++.++..|++.+.+
T Consensus       324 --~~~~~--~~~gt~~~~~~~a~~----------------------------------------aal~~~~~~~~~~~~~  359 (465)
T 3e9k_A          324 --PGVCG--FRISNPPILLVCSLH----------------------------------------ASLEIFKQATMKALRK  359 (465)
T ss_dssp             --SSGGG--GCCSCCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHH
T ss_pred             --CChHH--hccCCccHHHHHHHH----------------------------------------HHHHHHHHcCHHHHHH
Confidence              01233  789999999998876                                        6889888889999999


Q ss_pred             HHHHHHHHHHHHHhcCCCC--CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCc
Q 007454          440 RGRCLINWLVNALMKLQHP--NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI  517 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~--~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~  517 (603)
                      +.+.+++++.+.|.++...  ...+.+.+++++|.....++++++|.++ .++..     +.+.+.++||.++.+     
T Consensus       360 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~-----  428 (465)
T 3e9k_A          360 KSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR-----  428 (465)
T ss_dssp             HHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE-----
T ss_pred             HHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC-----
Confidence            9999999999999875210  0001245899998654567999999997 33332     344445679987611     


Q ss_pred             cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                         ..++||+|+ ++++|++||+++++.|+++++.
T Consensus       429 -----------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~  460 (465)
T 3e9k_A          429 -----------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS  460 (465)
T ss_dssp             -----------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             -----------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence                                               125999999 8999999999999999998865

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.97  E-value=1e-28  Score=264.23  Aligned_cols=348  Identities=17%  Similarity=0.108  Sum_probs=259.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.||||+++.++.++.+++++.+.+...                 ..++||++ .+.++....+.++++|+.+++++|+
T Consensus        21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~   83 (423)
T 3lvm_A           21 KLPIYLDYSATTPVDPRVAEKMMQFMTMD-----------------GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA   83 (423)
T ss_dssp             CSSEECBTTTCCCCCHHHHHHHTTSSSTT-----------------SCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEeecCCCcCCCCHHHHHHHHHHHhhc-----------------ccccCCCccccchhHHHHHHHHHHHHHHHHHcCC
Confidence            67899999999999999999988764310                 02356666 4445555678889999999999999


Q ss_pred             CCCcEEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454          186 SENDYVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS  236 (603)
Q Consensus       186 ~~~e~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~  236 (603)
                      ++++++|+...                             .+.......++..|+++..+++++ ++.++.++|++.|..
T Consensus        84 ~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~  162 (423)
T 3lvm_A           84 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NGIIDLKELEAAMRD  162 (423)
T ss_dssp             CGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHCCT
T ss_pred             CCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CCccCHHHHHHhcCC
Confidence            98899875321                             112112222355688999998884 788999999999863


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                            ++++|+++..+|.||.++|++.| ++|+++|+++++|+++..+.  .++++..+++|++++|+||+||  |.|+
T Consensus       163 ------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~g~  232 (423)
T 3lvm_A          163 ------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKGI  232 (423)
T ss_dssp             ------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTSCCSEEEEESTTTTS--CSSC
T ss_pred             ------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC--CCcChhhcCCCEEEechHHhcC--CCCe
Confidence                  68999999999999999999865 58999999999999999887  5788888999999999999998  7799


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |+++++++....+.+...||...                          ..  +..+|++...++++.            
T Consensus       233 G~~~~~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~a~~------------  272 (423)
T 3lvm_A          233 GALYVRRKPRVRIEAQMHGGGHE--------------------------RG--MRSGTLPVHQIVGMG------------  272 (423)
T ss_dssp             EEEEECBTTBCCCCCSSCSSCTT--------------------------TT--TCCSCCCHHHHHHHH------------
T ss_pred             EEEEEeccccCCCCccccCCccc--------------------------cc--ccCCCCCHHHHHHHH------------
Confidence            99999998887777655543210                          11  357888888877765            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF  475 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~  475 (603)
                                                  .+++.+... ++.+.++.+.+.++|.+.|.+++        .++++++.. .
T Consensus       273 ----------------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~-~  314 (423)
T 3lvm_A          273 ----------------------------EAYRIAKEE-MATEMERLRGLRNRLWNGIKDIE--------EVYLNGDLE-H  314 (423)
T ss_dssp             ----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTST--------TEEEESCST-T
T ss_pred             ----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC--------CEEEeCCcc-c
Confidence                                        467766543 78899999999999999998763        378888753 2


Q ss_pred             CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          476 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       476 ~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      ..+.++.|.+.+.+     ...+.+.+.+  |.++.|.+|.++.....     .++...+.       .     .....+
T Consensus       315 ~~~~~~~~~~~~~~-----~~~l~~~l~~--i~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~  370 (423)
T 3lvm_A          315 GAPNILNVSFNYVE-----GESLIMALKD--LAVSSGSACTSASLEPS-----YVLRALGL-------N-----DELAHS  370 (423)
T ss_dssp             BCTTEEEEEETTSC-----HHHHHHHTTT--EECBCCCC-----CCCC-----HHHHHHTC-------C-----HHHHHT
T ss_pred             cCCCeEEEEeCCCC-----HHHHHHHHhh--heeccCccccCCCcccc-----HHHHHhCC-------C-----ccccCc
Confidence            34679999996543     3445555544  99999999987644332     22222210       0     011136


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .||+|++..+|.|||+++++.|++++++-
T Consensus       371 ~iRi~~~~~~t~e~i~~~~~~l~~~~~~~  399 (423)
T 3lvm_A          371 SIRFSLGRFTTEEEIDYTIELVRKSIGRL  399 (423)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998764

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.97  E-value=2.1e-29  Score=268.35  Aligned_cols=363  Identities=18%  Similarity=0.257  Sum_probs=267.4

Q ss_pred             hHHHHHHhhccCcCCCC------ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccc
Q 007454           92 QIDQIRAKEYYQLSLSN------HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLH  164 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~------~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~  164 (603)
                      .+.++|+ +||.+  .+      .+|||++..++.|+.+++++.+.+..                   ..+|+++ .+.|
T Consensus         9 ~~~~~r~-~f~~~--~~~~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~y   66 (420)
T 1t3i_A            9 LAATVRQ-DFPIL--NQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEN-------------------DNANVHRGAHQL   66 (420)
T ss_dssp             HHHHHGG-GCGGG--SCEETTEECEECBTTTCCCCCHHHHHHHHHHHHH-------------------TCCCC--CCSHH
T ss_pred             HHHHHHH-hCCcc--ccccCCCceEEecCCccCCCCHHHHHHHHHHHHh-------------------ccCCCCcccchH
Confidence            5578887 69998  44      79999999999999999987764321                   1245543 3334


Q ss_pred             cchHHHHHHHHHHHHHHHcCC-CCCcEEEeccC-chH-----------------------------HHHHHHHHHcCCEE
Q 007454          165 GGQESGLESAMKKRIMDFLNI-SENDYVYDYES-EAV-----------------------------EAMIRTSEKRGARV  213 (603)
Q Consensus       165 g~~~~~~~~~aR~~Ia~~lna-~~~e~vf~~es-~sV-----------------------------~~~~~~a~~~Ga~V  213 (603)
                      +......+++.|+.|++++|. ++++++|+... +++                             ..+...++..|+++
T Consensus        67 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~  146 (420)
T 1t3i_A           67 SVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL  146 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEE
Confidence            444457788999999999999 77888765321 111                             11233445568888


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC
Q 007454          214 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL  292 (603)
Q Consensus       214 ~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl  292 (603)
                      ..++++ .++.++.++|++.|..      ++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++
T Consensus       147 ~~v~~~-~~~~~d~~~l~~~l~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~  217 (420)
T 1t3i_A          147 KFVQLD-EQESFDLEHFKTLLSE------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDV  217 (420)
T ss_dssp             EEECBC-TTSSBCHHHHHHHCCT------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCH
T ss_pred             EEeccC-CCCCcCHHHHHHhhCC------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCC--ccCch
Confidence            888887 4678999999998863      68999999999999999999865 58999999999999999887  46777


Q ss_pred             CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          293 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      ..+++|++++|+||+||  |.|+|++++++++++.+.+...+| ...........|  ..           .+.+  ++.
T Consensus       218 ~~~~~di~~~s~sK~~~--~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~--~~~  280 (420)
T 1t3i_A          218 QLIDCDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTT--GE-----------LPHK--FEA  280 (420)
T ss_dssp             HHHTCSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEE--CC-----------TTGG--GCC
T ss_pred             hhcCCCEEEEehhhhcC--CCceEEEEEchHHHhhcCceecCCCccccccccccCC--CC-----------chhh--ccC
Confidence            77889999999999998  789999999988877776654443 322110000001  00           0122  567


Q ss_pred             CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                      ||+++..++++.                                        .+++++.+.|++.+.++.+.+.+++.+.
T Consensus       281 ~~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~  320 (420)
T 1t3i_A          281 GTPAIAEAIALG----------------------------------------AAVDYLTDLGMENIHNYEVELTHYLWQG  320 (420)
T ss_dssp             SSCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHH----------------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            899988887765                                        4788877778999999999999999999


Q ss_pred             HhcCCCCCCCCCceEEEeCCCCCC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          452 LMKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       452 L~~L~h~~~~g~plv~Iygp~~~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                      |.+++        .+++++|.... .+++++.|.+++.     +...+.+.+.++||.++.|.+|.....          
T Consensus       321 L~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~~~~~~~~~~----------  377 (420)
T 1t3i_A          321 LGQIP--------QLRLYGPNPKHGDRAALASFNVAGL-----HASDVATMVDQDGIAIRSGHHCTQPLH----------  377 (420)
T ss_dssp             HHTCT--------TEEEESCCGGGSCBCSEEEEEETTB-----CHHHHHHHHHTTTEECBCSCTTCHHHH----------
T ss_pred             HHhCC--------CeEEeCCCccccccCCEEEEEECCC-----CHHHHHHHHHHCCeEEeeccccchHHH----------
Confidence            99863        27888764211 2589999998752     344566777788999999988864211          


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                       ...                +. .+.||+|++.++|.+||+++++.|+++++.
T Consensus       378 -~~~----------------g~-~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  412 (420)
T 1t3i_A          378 -RLF----------------DA-SGSARASLYFYNTKEEIDLFLQSLQATIRF  412 (420)
T ss_dssp             -HHT----------------TC-CCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -Hhc----------------CC-CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence             000                01 258999999999999999999999998764

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.97  E-value=5.3e-29  Score=264.18  Aligned_cols=343  Identities=15%  Similarity=0.025  Sum_probs=235.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      ++.||||+++.++.++.+++++.+.+..                   .++|+++.+.++....+.++++|+.+++++|++
T Consensus        19 ~~~iyld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~   79 (400)
T 3vax_A           19 SHMTYLDAAATTRVDQRVADIVLHWMTA-------------------EFGNAGSRHEYGIRAKRGVERAREYLASTVSAE   79 (400)
T ss_dssp             ---CCCCCCCCSSSCHHHHHHHHHHHHH-------------------HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHHh-------------------ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC
Confidence            6789999999999999999998764321                   235666655455556788899999999999999


Q ss_pred             CCcEEEeccC------------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454          187 ENDYVYDYES------------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS  236 (603)
Q Consensus       187 ~~e~vf~~es------------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~  236 (603)
                      +++++++...                              .+.......+++.|+++..+++++ ++.++.++|++.|..
T Consensus        80 ~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~  158 (400)
T 3vax_A           80 PDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SGRISVEGVMERLRP  158 (400)
T ss_dssp             GGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TCCCCHHHHHTTCCT
T ss_pred             CCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CCCcCHHHHHHhcCC
Confidence            8888775321                              111112223344688888888874 788999999988863


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCce
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~  315 (603)
                            ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+.  .++++..+ +|++++|+||++|  |.|+
T Consensus       159 ------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~--~~~~~~~~-~d~~~~s~~K~~g--~~g~  227 (400)
T 3vax_A          159 ------DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGK--VPGDLTTP-IDMISISGHKIGA--PKGV  227 (400)
T ss_dssp             ------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTT--SGGGGGSC-CSEEEEETGGGTS--CSSC
T ss_pred             ------CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCC--CCcChhhc-CcEEEEeHHHhCC--CCce
Confidence                  68999999999999999999865 58999999999999999887  57888877 9999999999988  8899


Q ss_pred             EEEE-EeCCCC----cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcc
Q 007454          316 GCLF-VKKSTV----PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL  390 (603)
Q Consensus       316 G~L~-vkk~~~----~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~  390 (603)
                      |+++ ++++.+    ..+.+...+|..                          ...  +..||++..+++++.       
T Consensus       228 g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~--~~~~~~~~~~~~a~~-------  272 (400)
T 3vax_A          228 GALVTRRREEMDDERVPLEPIMFGGGQ--------------------------ERK--LRPGTLPVPLIMGLA-------  272 (400)
T ss_dssp             EEEEECBCSSSTTCBCCCCCSSCSSCT--------------------------GGG--TSCSCCCHHHHHHHH-------
T ss_pred             EEEEEecchhccccccccCceecCCCc--------------------------eee--eecCCCCHHHHHHHH-------
Confidence            9999 988322    234443333221                          011  467889988887765       


Q ss_pred             ccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeC
Q 007454          391 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYG  470 (603)
Q Consensus       391 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iyg  470 (603)
                                                       .+++.+.+ +++.+.++.+.++++|.+.|. +.        .+++++
T Consensus       273 ---------------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~-~~--------~~~~~~  309 (400)
T 3vax_A          273 ---------------------------------EAAKIFEA-EHAQWQVAAQDLRSRLLAGLA-ST--------SFQVNG  309 (400)
T ss_dssp             ---------------------------------HHHHHHHH-SHHHHHHHHHHHHHHHHHHHT-TT--------TCEECS
T ss_pred             ---------------------------------HHHHHHHh-hHHHHHHHHHHHHHHHHHhhC-CC--------CEEEeC
Confidence                                             57776655 789999999999999999998 42        267777


Q ss_pred             CCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCC
Q 007454          471 PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKA  550 (603)
Q Consensus       471 p~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  550 (603)
                      |.. ...+.++.|.+++.+     ...+.+.+. +||.++.|..|......+.     .++...+.       .     .
T Consensus       310 ~~~-~~~~~~~~~~~~~~~-----~~~l~~~L~-~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~  365 (400)
T 3vax_A          310 DQD-HVVPHILNLSFEDVD-----AEAFLVTLK-DLVAVATGSASTSASFTPS-----HVLRAMGL-------P-----E  365 (400)
T ss_dssp             CTT-SBCTTEEEEECTTCC-----HHHHHHHHH-HHHHHTTTTEEEEEEECCH-----HHHHTTTC-------C-----H
T ss_pred             Ccc-cCCCCEEEEEeCCCC-----HHHHHHHHh-cCcEEEecccccCCCCCcc-----HHHHHcCC-------C-----c
Confidence            653 234679999988643     344555555 8999999999987643332     22222210       0     0


Q ss_pred             CCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 007454          551 NLGITVVTASL-GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       551 ~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ....+.||+|+ +.++|.|||+++++.|+++++
T Consensus       366 ~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  398 (400)
T 3vax_A          366 EAASKSLRFSWTPGQATDLDVEELARGVAKLKP  398 (400)
T ss_dssp             HHHTSEEEEEEEEC-------------------
T ss_pred             cccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence            11137999999 999999999999999998875

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.96  E-value=2.5e-27  Score=248.87  Aligned_cols=341  Identities=18%  Similarity=0.166  Sum_probs=240.2

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND  189 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e  189 (603)
                      +|||+++.++.++.+++++.+.+..                   .++|+++.+.++......+.+.|+.|++++|+++++
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~   63 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYRE-------------------KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE   63 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHT-------------------CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHh-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCe
Confidence            8999999999999999998765321                   124555434344445677889999999999999888


Q ss_pred             EEEeccC-----------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          190 YVYDYES-----------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       190 ~vf~~es-----------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++++...                             .++......++..|+++..++++ +++.++.++|++.|..    
T Consensus        64 v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~----  138 (384)
T 1eg5_A           64 IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD-SRGVVKLEELEKLVDE----  138 (384)
T ss_dssp             EEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC-TTSCBCHHHHHHHCCT----
T ss_pred             EEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccC-CCCccCHHHHHHHhCC----
Confidence            8775321                             11212222335668888888887 4678999999998863    


Q ss_pred             CCCeeEEEEeCccccccccccHHHH-HHHHhCC--cEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND--WHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g--~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                        +++++++++.+|.||.++|++.+ ++|+++|  +++++|+++..+.  .++++..+++|++++|+||+||  |.|+|+
T Consensus       139 --~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~sK~~g--~~G~G~  212 (384)
T 1eg5_A          139 --DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PKGVGI  212 (384)
T ss_dssp             --TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CTTCEE
T ss_pred             --CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCC--cccCchhcCCCEEEecHHHhcC--CCceEE
Confidence              68999999999999999999865 5899999  9999999988776  4677877789999999999999  779999


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      ++++++.  .+.+.+.++..       .                   ..  +..|++|..++.++.              
T Consensus       213 ~~~~~~~--~~~~~~~~~~~-------~-------------------~~--~~~~~~~~~~~~a~~--------------  248 (384)
T 1eg5_A          213 TYIRKGV--PIRPLIHGGGQ-------E-------------------RG--LRSGTQNVPGIVGAA--------------  248 (384)
T ss_dssp             EEECTTS--CCCCSBCSSCT-------T-------------------TT--TBCSCCCHHHHHHHH--------------
T ss_pred             EEEcCCC--ccccccccCcc-------c-------------------cc--ccCCCCChHHHHHHH--------------
Confidence            9999875  23433322110       0                   01  246778887766554              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                ++++...+ +++.+.++.+.++++|.+.|.+.      |   +++++|.. ...
T Consensus       249 --------------------------~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~-~~~  291 (384)
T 1eg5_A          249 --------------------------RAMEIAVE-ELSEAAKHMEKLRSKLVSGLMNL------G---AHIITPLE-ISL  291 (384)
T ss_dssp             --------------------------HHHHHHHH-THHHHHHHHHHHHHHHHHHHHTT------T---CEECSCTT-SBC
T ss_pred             --------------------------HHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCC------C---eEEeCCcc-cCC
Confidence                                      57766543 67888999999999999999873      2   56666632 124


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      +.++.|.+++.+     ...+.+.+.++||.++.|..|......+.     .+++..+.       .     .....+.|
T Consensus       292 ~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~-----~~~~~~g~-------~-----~~~~~~~i  349 (384)
T 1eg5_A          292 PNTLSVSFPNIR-----GSTLQNLLSGYGIYVSTSSACTSKDERLR-----HVLDAMGV-------D-----RRIAQGAI  349 (384)
T ss_dssp             TTEEEEECTTCC-----HHHHHHHHHHTTEECBC-----------------CHHHHTTC-------C-----HHHHHHEE
T ss_pred             CCEEEEEeCCCC-----HHHHHHHHhhCCeEEeccccccCCCCcch-----HHHHHcCC-------C-----hhhcCCeE
Confidence            678999887543     34455555679999999988865422221     12222110       0     00113689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+|++.++|.+||+++++.|++++++
T Consensus       350 Ri~~~~~~~~~~i~~~~~~l~~~~~~  375 (384)
T 1eg5_A          350 RISLCKYNTEEEVDYFLKKIEEILSF  375 (384)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.96  E-value=3.5e-28  Score=259.54  Aligned_cols=377  Identities=12%  Similarity=0.179  Sum_probs=251.7

Q ss_pred             HHHHHHHhCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccc
Q 007454           76 SLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKT  155 (603)
Q Consensus        76 ~~~~F~~~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~  155 (603)
                      .|+..++..      ..++++|+ +||.+  ++.+|||+++.++.++.+++++.+.+..                   .+
T Consensus         5 ~~~~~~~~~------~~~~~~r~-~f~~~--~~~~yld~~~~~~~~~~v~~a~~~~l~~-------------------~~   56 (416)
T 1qz9_A            5 NDCLALDAQ------DSLAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAE-------------------EW   56 (416)
T ss_dssp             HHHHHHHHT------CTTGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHT-------------------CC
T ss_pred             hHHHhcccc------chhHHHHH-hCCCC--CCeEeecCCCcCCCcHHHHHHHHHHHHH-------------------HH
Confidence            355666644      25678887 69988  7899999999999999999988765321                   11


Q ss_pred             cccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC-chHHHHHHHHH------HcCCEEEEEe-ccCCc-----
Q 007454          156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYES-EAVEAMIRTSE------KRGARVMSAE-FSWPR-----  222 (603)
Q Consensus       156 aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~~~~a~------~~Ga~V~~~~-~~~~~-----  222 (603)
                      +|+.+...+.......++++|+.|++++|+++++++|+... +++..++..+.      +.|.+|...+ ..++.     
T Consensus        57 ~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~  136 (416)
T 1qz9_A           57 GNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIA  136 (416)
T ss_dssp             CCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHH
T ss_pred             hccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHH
Confidence            23322111111123567899999999999988899887432 23433334332      4566544443 23321     


Q ss_pred             ---------c-c---cC-HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC
Q 007454          223 ---------L-R---IN-SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM  287 (603)
Q Consensus       223 ---------g-~---i~-~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m  287 (603)
                               | .   ++ .++|++.|.      +++++|++++.+|.||.++|++.| ++|+++|+++++|+++..|.  
T Consensus       137 ~~~~~~~~~g~~~~~v~~~~~l~~~i~------~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--  208 (416)
T 1qz9_A          137 EGLADMLQQGYTLRLVDSPEELPQAID------QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA--  208 (416)
T ss_dssp             HHHHHHHCSSCEEEEESSGGGHHHHCS------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--
T ss_pred             HHHHHHhcCCceEEEeCcHHHHHHHhC------CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC--
Confidence                     1 0   11 456666664      368999999999999999999866 58999999999999999887  


Q ss_pred             CCCCCCCCCCcEEEEcccccCCCCCCce-EEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcc
Q 007454          288 DSFGLSLVRPDFLICSFYQIFGENPSGF-GCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSK  364 (603)
Q Consensus       288 ~~ldls~~~~Dflv~S~hK~fG~~P~G~-G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~  364 (603)
                      .++++..+++|++++|+||++++ +.|+ |+++++++..+.+++...|  |....... ...+....           ..
T Consensus       209 ~~~~~~~~~~d~~~~s~~K~l~~-g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~-~~~~~~~~-----------~~  275 (416)
T 1qz9_A          209 VPVDLHQAGADYAIGCTYKYLNG-GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAM-EPRYEPSN-----------GI  275 (416)
T ss_dssp             SCCCHHHHTCSEEEECSSSTTCC-CTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCC-CSSCCBCS-----------SG
T ss_pred             cCCChhhcCCCEEEecCcccCCC-CCCCeEEEEECHHHHhccCCCccccCccccccCC-CCccCCCc-----------ch
Confidence            57777777899999999998643 4466 9999999988777765444  22110000 00010000           01


Q ss_pred             cccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHH
Q 007454          365 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCL  444 (603)
Q Consensus       365 ~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L  444 (603)
                      ..  ++.||+|..+++++.                                        ++++.+.+.+++.+.++.+.+
T Consensus       276 ~~--~~~~~~~~~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~  313 (416)
T 1qz9_A          276 AR--YLCGTQPITSLAMVE----------------------------------------CGLDVFAQTDMASLRRKSLAL  313 (416)
T ss_dssp             GG--GCCSCCCHHHHHHHH----------------------------------------HHHHHHTTSCHHHHHHHHHHH
T ss_pred             HH--hcCCCCCHHHHHHHH----------------------------------------HHHHHHHhcCHHHHHHHHHHH
Confidence            12  468899998887765                                        588877666899999999999


Q ss_pred             HHHHHHHHhcC-CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454          445 INWLVNALMKL-QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY  523 (603)
Q Consensus       445 ~~~L~~~L~~L-~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~  523 (603)
                      +++|.+.|.++ +.      +.+++++|.....+++++.|.+++       ...+.+.+.++||.++.            
T Consensus       314 ~~~l~~~L~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~------------  368 (416)
T 1qz9_A          314 TDLFIELVEQRCAA------HELTLVTPREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDY------------  368 (416)
T ss_dssp             HHHHHHHHHHHHTT------SCCEECSCSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECEE------------
T ss_pred             HHHHHHHHHhhccC------CCeEEeCCCCHHHcCCEEEEecCC-------HHHHHHHHHhCCcEecc------------
Confidence            99999999875 20      026777764222357889888864       23344444567887531            


Q ss_pred             hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhhhhccccccccccCccce
Q 007454          524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDADFVEKARWRYTALDQKTI  601 (603)
Q Consensus       524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~~~~~~~~~~  601 (603)
                                                  ...+.||+|++ +++|.+||+++++.|++++.     +..|+.-..|+++.
T Consensus       369 ----------------------------~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~-----~~~~~~~~~~~~~~  414 (416)
T 1qz9_A          369 ----------------------------REPRIMRFGFTPLYTTFTEVWDAVQILGEILD-----RKTWAQAQFQVRHS  414 (416)
T ss_dssp             ----------------------------ETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH-----HTTTC---------
T ss_pred             ----------------------------CCCCeEEEeCcccCCCHHHHHHHHHHHHHHHh-----ccccccccccccCC
Confidence                                        01258999998 69999999999999998865     36899988888864

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=1.2e-27  Score=252.15  Aligned_cols=350  Identities=13%  Similarity=0.124  Sum_probs=249.1

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL  171 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~  171 (603)
                      .++++|+ +||.+  ++.+|||+++.++.++.+++++.+.+...                  ...++.+...|. .....
T Consensus         3 ~~~~~r~-~f~~~--~~~i~l~~~~~~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~y~-~~~~~   60 (390)
T 1elu_A            3 MITPSLH-QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGYL------------------QENGPFSIAANQ-HIQQL   60 (390)
T ss_dssp             --------CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHHH------------------HHHCSSSHHHHH-HHHHH
T ss_pred             chHHHHH-hcCCC--CCeEEecCCccCCCCHHHHHHHHHHHHHH------------------hccCCcchhhHH-HHHHH
Confidence            4678887 69988  77999999999999999999877643210                  012222211221 12366


Q ss_pred             HHHHHHHHHHHcCCCCCcEEEecc--------------------------CchHH-HHHHHHHHcCCEEEEEeccC-Ccc
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYE--------------------------SEAVE-AMIRTSEKRGARVMSAEFSW-PRL  223 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~e--------------------------s~sV~-~~~~~a~~~Ga~V~~~~~~~-~~g  223 (603)
                      ..+.|++|++++|+++++++++..                          +.+.. .+...++..|+++..++.+. .++
T Consensus        61 ~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  140 (390)
T 1elu_A           61 IAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ  140 (390)
T ss_dssp             HHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS
T ss_pred             HHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc
Confidence            789999999999998888876421                          11221 12334566799999998752 256


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHH----hCCcEEEEeccccCCCCCCCCCCCCCCCc
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQ----ENDWHILIDACALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~----e~g~~vlvDAaq~~~~~m~~ldls~~~~D  298 (603)
                      .++.++|++.|..      ++++|++++.+|.||.++|++.+ ++|+    ++|+++++|.++..+.  .++++...++|
T Consensus       141 ~~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~--~~~~~~~~~~d  212 (390)
T 1elu_A          141 GDAAAVLANHLGP------KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVD  212 (390)
T ss_dssp             SCHHHHHHTTCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCS
T ss_pred             cchHHHHHHhcCC------CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC--cCCChhhcCCC
Confidence            7888999888753      68999999999999999999866 5899    9999999999998887  57888888999


Q ss_pred             EEEEcccc-cCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          299 FLICSFYQ-IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       299 flv~S~hK-~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ++++|+|| ++|  |.|+|++++++++++.+.+...| +.+........ +...+           ....  ++.||+|.
T Consensus       213 ~~~~s~~K~~~~--~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~-----------~~~~--~~~~~~~~  276 (390)
T 1elu_A          213 YYAFTGHKWFAG--PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEP-TGWAE-----------GGKR--FEVATSAY  276 (390)
T ss_dssp             EEEEESSSTTCC--CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCE-EEECS-----------GGGG--GCCSCCCH
T ss_pred             EEEccccccccC--CCceEEEEECHHhHhhcCCccccCCcccccccCcc-ccccc-----------chHh--hCCCCCCH
Confidence            99999999 455  78999999999998888876666 33221110000 10000           0112  46788888


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      .+.+++.                                        .+++.+...| ++.+.++.+.+++++.+.|.++
T Consensus       277 ~~~~a~~----------------------------------------~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~  316 (390)
T 1elu_A          277 PQYAGLL----------------------------------------AALQLHQRQGTAEERYQAICQRSEFLWRGLNQL  316 (390)
T ss_dssp             HHHHHHH----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHH----------------------------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            8776654                                        5788776667 8999999999999999999986


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      +        .+++++|.  ..+++++.|.++.  +  ++...+.+.+.++||.++.|.                      
T Consensus       317 ~--------g~~~~~~~--~~~~~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~~~----------------------  360 (390)
T 1elu_A          317 P--------HVHCLATS--APQAGLVSFTVDS--P--LGHRAIVQKLEEQRIYLRTIA----------------------  360 (390)
T ss_dssp             T--------TEEESCSS--CCSSSEEEEEECS--S--SCHHHHHHHHHHTTEECEEET----------------------
T ss_pred             C--------CcEEecCc--cccccEEEEEcCC--C--CCHHHHHHHHHHCCEEEEecC----------------------
Confidence            3        27888763  2468899998852  1  233444444467799988652                      


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                       ..+.||+|+++++|.+|++++++.|+++
T Consensus       361 -----------------~~~~iRis~~~~~~~~~i~~~~~~l~~~  388 (390)
T 1elu_A          361 -----------------DPDCIRACCHYITDEEEINHLLARLADF  388 (390)
T ss_dssp             -----------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             -----------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence                             0158999999999999999999998764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.96  E-value=1.6e-27  Score=252.07  Aligned_cols=340  Identities=11%  Similarity=0.035  Sum_probs=247.3

Q ss_pred             hccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454          100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI  179 (603)
Q Consensus       100 efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I  179 (603)
                      +||.+  .+.+|||+++.++.++.+++++.+.+.                       +    + .+......+++.|+.+
T Consensus         2 ~fp~~--~~~~yl~~~~~~~~~~~v~~a~~~~~~-----------------------~----~-~~~~~~~~~~~l~~~l   51 (392)
T 2z9v_A            2 RYPEH--ADPVITLTAGPVNAYPEVLRGLGRTVL-----------------------Y----D-YDPAFQLLYEKVVDKA   51 (392)
T ss_dssp             CCCTT--SCCSEECSSSCCCCCHHHHHHTTSCCC-----------------------C----T-TSHHHHHHHHHHHHHH
T ss_pred             CcccC--CCcceeecCCCcCCCHHHHHHHhcccc-----------------------c----c-ccHHHHHHHHHHHHHH
Confidence            59999  788999999999999999999765421                       1    0 1122456788999999


Q ss_pred             HHHcCCCCCcEEEecc-------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHH
Q 007454          180 MDFLNISENDYVYDYE-------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV  234 (603)
Q Consensus       180 a~~lna~~~e~vf~~e-------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l  234 (603)
                      ++++|+++++++++..                         +.+.. +...++..|+++..+++++ ++.++.++|++.|
T Consensus        52 a~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l  129 (392)
T 2z9v_A           52 QKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPY-NEAIDPQAVADML  129 (392)
T ss_dssp             HHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCT-TSCCCHHHHHHHH
T ss_pred             HHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCC-CCCCCHHHHHHHH
Confidence            9999998888876421                         22232 3445566799999999984 6789999999999


Q ss_pred             hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~  313 (603)
                      ..    .+++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||++++ |.
T Consensus       130 ~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~  202 (392)
T 2z9v_A          130 KA----HPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGG--MKTHPEDCKADIYVTGPNKCLGA-PP  202 (392)
T ss_dssp             HH----CTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BSCCGGGGTCSEEEECSSSTTCC-CS
T ss_pred             hc----CCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCC--cccccccccceEEEecCcccccC-CC
Confidence            63    1358899999999999999999865 58999999999999998887  57888878899999999996554 78


Q ss_pred             ceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                      |+|+++++++.++.+++...| |...  ......+  .     .+.     ...  ...||+|...++++.         
T Consensus       203 g~G~l~~~~~~~~~l~~~~~g~~~~~--~~~~~~~--~-----~~~-----~~~--~~~~~~~~~~~~a~~---------  257 (392)
T 2z9v_A          203 GLTMMGVSERAWAKMKANPLAPRASM--LSIVDWE--N-----AWS-----RDK--PFPFTPSVSEINGLD---------  257 (392)
T ss_dssp             CCEEEEECHHHHHHHHTCTTSCCSST--TCSGGGT--T-----TTS-----TTS--CCSSCCCHHHHHHHH---------
T ss_pred             ceeEEEECHHHHHHhhhccCCCCcee--ccHHHHH--h-----hhc-----ccC--CCCCCCCHHHHHHHH---------
Confidence            999999998876556542211 1000  0000000  0     000     011  357888888877665         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                     ++++.+.+.|++.+.++.+.+++++.+.|.++      |   +++++|.
T Consensus       258 -------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~  297 (392)
T 2z9v_A          258 -------------------------------VALDLYLNEGPEAVWARHALTAKAMRAGVTAM------G---LSVWAAS  297 (392)
T ss_dssp             -------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CCBSSSS
T ss_pred             -------------------------------HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc------C---CeeccCC
Confidence                                           57888777789999999999999999999876      1   4555532


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN  551 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  551 (603)
                      .....++++.|.+++.    ++.. ++++|.+++||.++.|..+                                    
T Consensus       298 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~------------------------------------  337 (392)
T 2z9v_A          298 DSIASPTTTAVRTPDG----VDEKALRQAARARYGVVFSSGRGE------------------------------------  337 (392)
T ss_dssp             GGGBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGG------------------------------------
T ss_pred             ccccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEecCCCC------------------------------------
Confidence            1123578899988621    2233 4455555559999887532                                    


Q ss_pred             CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          552 LGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       552 ~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ...+.+|+|+ ++++|.+||+++++.|++++++
T Consensus       338 ~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~  370 (392)
T 2z9v_A          338 TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA  370 (392)
T ss_dssp             GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence            0125899995 6699999999999999999865

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.5e-26  Score=243.40  Aligned_cols=343  Identities=12%  Similarity=0.094  Sum_probs=249.9

Q ss_pred             HHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH
Q 007454           94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES  173 (603)
Q Consensus        94 d~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~  173 (603)
                      .++|+ +||.+  ++.+|||+++.+++++.+++++.+.+..                            .++.......+
T Consensus         8 ~~~r~-~f~~~--~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------------------------~~~~~~~~~~~   56 (386)
T 2dr1_A            8 EAFKE-VYEMV--KPKYKLFTAGPVACFPEVLEIMKVQMFS----------------------------HRSKEYRKVHM   56 (386)
T ss_dssp             HHHHH-HHHHH--SCCSEECCSSSCCCCHHHHHHTTSCCCC----------------------------TTSHHHHHHHH
T ss_pred             HHHHH-HHhhc--CccceeecCCCcCCcHHHHHHHhccccc----------------------------ccCHHHHHHHH
Confidence            56787 59988  6689999999999999999997653210                            11222357888


Q ss_pred             HHHHHHHHHcCCC-CCcEEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHH
Q 007454          174 AMKKRIMDFLNIS-ENDYVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSE  228 (603)
Q Consensus       174 ~aR~~Ia~~lna~-~~e~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~  228 (603)
                      ++++.+++++|++ +++++++..                      ..+...  +...++..|+++..++.++ ++.++.+
T Consensus        57 ~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~  135 (386)
T 2dr1_A           57 DTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPE  135 (386)
T ss_dssp             HHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHH
T ss_pred             HHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHH
Confidence            9999999999997 556766421                      111222  4556677899999999884 6789999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccccc
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQI  307 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~  307 (603)
                      +|++.|..    .+++++|++.+.+|.||.+.|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||+
T Consensus       136 ~l~~~l~~----~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~  209 (386)
T 2dr1_A          136 DLDDALRK----NPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGG--ADIKFDKWGLDVVFSSSQKA  209 (386)
T ss_dssp             HHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEEEETTST
T ss_pred             HHHHHHhc----CCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccC--ccccccccCCcEEEEecccc
Confidence            99999963    1368999999999999999999855 58999999999999998887  46788888999999999999


Q ss_pred             CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcc-cccccccCCCChhhhhhhhhhh
Q 007454          308 FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK-SKQEKVAATNTFSGPMSIEMRQ  386 (603)
Q Consensus       308 fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~e~GT~n~~gi~gl~~~~  386 (603)
                      ||. |.|+|+++++++.++.+.+....|...   ......  ..     +      . ..  ...+|+|..+.+++.   
T Consensus       210 ~~~-~~g~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-----~------~~~~--~~~~~~~~~~~~a~~---  267 (386)
T 2dr1_A          210 FGV-PPGLAIGAFSERFLEIAEKMPERGWYF---DIPLYV--KY-----L------KEKE--STPSTPPMPQVFGIN---  267 (386)
T ss_dssp             TCC-CSSCEEEEECHHHHHHHTTCTTCCSTT---CHHHHH--HH-----H------HHHS--SCSSCCCHHHHHHHH---
T ss_pred             ccC-CCceEEEEECHHHHHHHhcCCCCceEE---eHHHHH--Hh-----h------ccCC--CCCCCCCHHHHHHHH---
Confidence            886 778999999988766665422112100   000000  00     0      0 01  346777877766654   


Q ss_pred             cCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454          387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNAL  465 (603)
Q Consensus       387 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl  465 (603)
                                                           .+++.+.+. |++.+.++.+.+++++.+.|.++      |   
T Consensus       268 -------------------------------------~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------g---  301 (386)
T 2dr1_A          268 -------------------------------------VALRIIEKMGGKEKWLEMYEKRAKMVREGVREI------G---  301 (386)
T ss_dssp             -------------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT------T---
T ss_pred             -------------------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc------C---
Confidence                                                 578887777 79999999999999999999886      2   


Q ss_pred             EEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          466 VKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       466 v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      +++++|.. ...+.++.|.+++.    ++.. ++++|. ++||.++.|..+                             
T Consensus       302 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~l~-~~gi~v~~~~~~-----------------------------  346 (386)
T 2dr1_A          302 LDILAEPG-HESPTITAVLTPPG----IKGDEVYEAMR-KRGFELAKGYGS-----------------------------  346 (386)
T ss_dssp             CCBSSCTT-CBCSSEEEEECCTT----CCHHHHHHHHH-HTTEECEECCGG-----------------------------
T ss_pred             CeeCcCcc-ccCCceEEEEcCCC----CCHHHHHHHHH-HCCeEEecCccc-----------------------------
Confidence            34555532 23578999988631    2333 344555 459999877521                             


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                             ...+.||+|++.++|.+|++++++.|+++++.-
T Consensus       347 -------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  379 (386)
T 2dr1_A          347 -------VKEKTFRIGHMGYMKFEDIQEMLDNLREVINEL  379 (386)
T ss_dssp             -------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence                   012589999999999999999999999998753

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.95  E-value=2.2e-26  Score=243.49  Aligned_cols=343  Identities=11%  Similarity=0.057  Sum_probs=247.4

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL  171 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~  171 (603)
                      +++..|+ .||.|. ++.+|+|+.+..++++.+++++.+.+..                   +         +.......
T Consensus         4 ~~~~~~~-~~~~~~-~~~~~~~~~g~~~~~~~v~~a~~~~~~~-------------------~---------~~~~~~~~   53 (393)
T 2huf_A            4 KVTPPAV-LREPLV-TPNKLLMGPGPSNAPQRVLDAMSRPILG-------------------H---------LHPETLKI   53 (393)
T ss_dssp             SSCCCGG-GGSCCC-CCCCEECSSSCCCCCHHHHHHTTSCCCC-------------------T---------TSHHHHHH
T ss_pred             cccchhh-hhcccC-CCCeEEecCCCCCCCHHHHHHHHhhhcc-------------------C---------CCHHHHHH
Confidence            3444555 599986 6789999999999999999997653210                   0         01123567


Q ss_pred             HHHHHHHHHHHcCCCCC-cEEEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCcccc
Q 007454          172 ESAMKKRIMDFLNISEN-DYVYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~-e~vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ++++|+.+++++|++++ +++++.                         .+.+.. +...++..|++++.+++++ ++.+
T Consensus        54 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~  131 (393)
T 2huf_A           54 MDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKV-GQSL  131 (393)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCT-TCCC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCC-CCCC
Confidence            88999999999999876 676632                         112221 3445567899999999984 6789


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|++.|...     ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+.  .++++..+++|++++|+
T Consensus       132 d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~  204 (393)
T 2huf_A          132 SLDEIRDALLIH-----KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGG--APMFMDRWEIDAMYTGS  204 (393)
T ss_dssp             CHHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCSEEECCS
T ss_pred             CHHHHHHHHhcc-----CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCC--CCcchhhcCccEEEECC
Confidence            999999999741     47899999999999999999855 68999999999999998887  57888888999999999


Q ss_pred             cccCCCCCCceEEEEEeCCCCcCcCCC-------CCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          305 YQIFGENPSGFGCLFVKKSTVPILVDN-------TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       305 hK~fG~~P~G~G~L~vkk~~~~~L~p~-------~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ||+|++ |.|+|+++++++.++.+.+.       ++++...     ..++.. .     .      ..+  ++.||+++.
T Consensus       205 sK~l~g-~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~-----~------~~~--~~~~~~~~~  264 (393)
T 2huf_A          205 QKVLGA-PPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLV-----GDYWGC-F-----G------RPR--IYHHTISST  264 (393)
T ss_dssp             SSTTCC-CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH-----HHHTTC-S-----S------SCC--CCSCCCCHH
T ss_pred             Cccccc-CCCeEEEEECHHHHHHHhhcCCCCceEEEchHHH-----Hhhhcc-c-----c------ccC--CCCCCCCHH
Confidence            997544 88999999998766544322       1110000     000000 0     0      012  467899999


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      +++++.                                        ++++.+.+.|++.+.++.+.++++|.+.|.++  
T Consensus       265 ~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  302 (393)
T 2huf_A          265 LLYGLR----------------------------------------EAIAMACEEGLPALIARHEDCAKRLYRGLQDA--  302 (393)
T ss_dssp             HHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--
Confidence            887765                                        57877766689999999999999999999886  


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                          |   +++++|.. ...+.++.|.++.  +  ++. ++.++|++++||.++.|..|.                    
T Consensus       303 ----g---~~~~~~~~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~~--------------------  350 (393)
T 2huf_A          303 ----G---FELYADPK-DRLSTVTTIKVPQ--G--VDWLKAAQYAMKTYLVEISGGLGPT--------------------  350 (393)
T ss_dssp             ----T---CCBSSCGG-GBCTTEEEEECCT--T--CCHHHHHHHHHHHHCEECBCCCGGG--------------------
T ss_pred             ----C---CeeccCcc-ccCCcEEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCcccc--------------------
Confidence                2   44555531 1224588898862  1  223 345556666799998875431                    


Q ss_pred             ccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                      ..+.||+|+ ++.++.|||+++++.|+++++.
T Consensus       351 ----------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~  382 (393)
T 2huf_A          351 ----------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAA  382 (393)
T ss_dssp             ----------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ----------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence                            125899999 5556899999999999998865

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.95  E-value=3e-26  Score=240.62  Aligned_cols=324  Identities=12%  Similarity=0.113  Sum_probs=223.7

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc---cccccchHHHHHHHHHHHHHHHc
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT---QLLHGGQESGLESAMKKRIMDFL  183 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s---~~~~g~~~~~~~~~aR~~Ia~~l  183 (603)
                      +.++|||++|.+++|+.+++++.+.+...                   .++..+   ...++....++.+++|+++++++
T Consensus         2 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~   62 (362)
T 2c0r_A            2 SERAYNFNAGPAALPLEVLERAQAEFVDY-------------------QHTGMSIMEMSHRGAVYEAVHNEAQARLLALL   62 (362)
T ss_dssp             CCCCEECCSSSCCCCHHHHHHHHHTSSSS-------------------TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHT
T ss_pred             CcceeeccCCCCCCCHHHHHHHHHHHhhh-------------------hhcCccccccCCCcHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999998765321                   011111   11122334578899999999999


Q ss_pred             CCCCC-cE-EEecc-----------------------CchHH-HHHHHHHHcCCEEEEEeccC--Ccc-ccCHHHHHHHH
Q 007454          184 NISEN-DY-VYDYE-----------------------SEAVE-AMIRTSEKRGARVMSAEFSW--PRL-RINSEKLRKMV  234 (603)
Q Consensus       184 na~~~-e~-vf~~e-----------------------s~sV~-~~~~~a~~~Ga~V~~~~~~~--~~g-~i~~~~L~~~l  234 (603)
                      |++++ ++ +++..                       ..... .+...++..| +++.++++.  ..+ .++.++++  |
T Consensus        63 g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i  139 (362)
T 2c0r_A           63 GNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--L  139 (362)
T ss_dssp             TCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--C
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--c
Confidence            99775 64 44311                       00011 1234456668 888888752  112 24544432  3


Q ss_pred             hhcCCCCCCeeEEEEeCcccccccc-ccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGAR-YPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~  313 (603)
                            +++|++|++++.+|.||.+ .|++.+     +|++|++|++|..++  .++++.++  |++++|+||+||  |.
T Consensus       140 ------~~~t~~v~~~~~~n~tG~~~~~l~~i-----~~~~vivD~a~~~~~--~~~~~~~~--d~~~~s~~K~~g--~~  202 (362)
T 2c0r_A          140 ------QDNAAYLHLTSNETIEGAQFKAFPDT-----GSVPLIGDMSSDILS--RPFDLNQF--GLVYAGAQKNLG--PS  202 (362)
T ss_dssp             ------CTTEEEEEEESEETTTTEECSSCCCC-----TTSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTC--CS
T ss_pred             ------CCCcCEEEEeCCcCccceeccccccc-----CCCEEEEEChhhccC--CccchhHC--cEEEEecccccc--Cc
Confidence                  2479999999999999996 666654     899999999999998  67887764  999999999999  88


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      |+|+|+++++.++.+.+... ....+    .. +  ..             ..  ...||+|..+++++.          
T Consensus       203 G~G~l~~~~~~~~~l~~~~~-~~~~~----~~-~--~~-------------~~--~~~~t~~~~~~~a~~----------  249 (362)
T 2c0r_A          203 GVTVVIVREDLVAESPKHLP-TMLRY----DT-Y--VK-------------NN--SLYNTPPSFGIYMVN----------  249 (362)
T ss_dssp             SCEEEEEEGGGSSSCCTTSC-GGGCH----HH-H--HH-------------TT--TCSSCCCHHHHHHHH----------
T ss_pred             CcEEEEEcHHHHhhccccCc-hHHhH----HH-H--hh-------------cc--CcCCCchHHHHHHHH----------
Confidence            99999999988766654210 00000    00 0  00             00  246889988887765          


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                    ++++.+.+. |++.+.++.+.++++|.+.|.++.     +  ++.++++.
T Consensus       250 ------------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~--~~~~~~~~  292 (362)
T 2c0r_A          250 ------------------------------EVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG-----G--FYRGCVDV  292 (362)
T ss_dssp             ------------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-----T--SSEESSCG
T ss_pred             ------------------------------HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC-----C--ccccCCCh
Confidence                                          688887776 689999999999999999999762     1  12555542


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                      . ...++++.|.+++  +  +....+.+.+.++||.++.|..+                                     
T Consensus       293 ~-~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gi~~~~g~~~-------------------------------------  330 (362)
T 2c0r_A          293 D-SRSDMNITFRLAS--E--ELEKEFVKASEQEGFVGLKGHRS-------------------------------------  330 (362)
T ss_dssp             G-GBCSSEEEEECSC--H--HHHHHHHHHHHHTTEESCBCCTT-------------------------------------
T ss_pred             H-HcCCcEEEEEcCC--c--chHHHHHHHHHHCCCeeccCCCC-------------------------------------
Confidence            1 2356789998864  1  22334555567789977654211                                     


Q ss_pred             CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          553 GITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                       .+.||+|++.++|.|||++|+++|++++.
T Consensus       331 -~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          331 -VGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             -TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             -CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence             14699999999999999999999999875

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.95  E-value=1e-27  Score=262.01  Aligned_cols=360  Identities=11%  Similarity=-0.033  Sum_probs=227.9

Q ss_pred             CCCCCCc-hhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc
Q 007454           84 YPQYFDT-YQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL  162 (603)
Q Consensus        84 ~p~y~~~-~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~  162 (603)
                      .|+.... .++.++|+ +||.+  ...+||||+|+|++++.|++++.......       |.+..-........||  ..
T Consensus        58 lp~~g~~~~~i~~~~~-~~~~~--~~~~yld~aa~~~~~~~v~~a~~~~~~~~-------~~~~~~~~~~~~~~~~--~~  125 (456)
T 2z67_A           58 IPENGIDDEKIKLFLK-FLSMM--DTDKDPKSVRIGEREARTYSKIHEELSSG-------FCHGIGRSGNLVDPQP--KA  125 (456)
T ss_dssp             CCSSCCCHHHHHHHHH-HHHTT--BGGGCTTCEECSSCCCCCSCHHHHHHTTT-------CTTCBSBTTBTTSCCT--TB
T ss_pred             CCCCCCCHHHHHHHHH-HHHhc--cccccccccccccccccccccccCccccc-------cCCCccHHHHHHhhCc--cc
Confidence            4554432 56888888 59999  66899999999999999988865411000       0000000000112333  11


Q ss_pred             cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCc-hHH--H----------------------HHHHHHHcCCEEEEEe
Q 007454          163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYESE-AVE--A----------------------MIRTSEKRGARVMSAE  217 (603)
Q Consensus       163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~-sV~--~----------------------~~~~a~~~Ga~V~~~~  217 (603)
                      ..+....++++++|+.+++++|++++ ++|+.... +.+  .                      +...++..|++++.++
T Consensus       126 ~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~  204 (456)
T 2z67_A          126 SGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVE  204 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEEC
T ss_pred             ccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEE
Confidence            11113567889999999999999876 77764332 111  1                      1223344577777776


Q ss_pred             c---cCCccccCHHHHHHHH-hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe---ccccCCCCCCC
Q 007454          218 F---SWPRLRINSEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID---ACALGPKDMDS  289 (603)
Q Consensus       218 ~---~~~~g~i~~~~L~~~l-~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD---Aaq~~~~~m~~  289 (603)
                      .   + .++.++.++|+++| ....  +.++.+|++...+|+||.+.|++.| ++|+++|++|++|   +.|..|+  .+
T Consensus       205 ~~~~~-~~~~~d~~~l~~~i~~~~~--~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~--~~  279 (456)
T 2z67_A          205 TVLDG-DRVYVPVEDIENAIKKEIE--LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY--LE  279 (456)
T ss_dssp             CEEET-TEEECCHHHHHHHHHHHHH--TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH--HH
T ss_pred             EeccC-CCCCcCHHHHHHHHHHHhh--CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh--hH
Confidence            5   3 46789999999999 4210  1257888889999999999999966 5899999999999   5566655  35


Q ss_pred             CCCCCC--CCcEEEEcccccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454          290 FGLSLV--RPDFLICSFYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK  366 (603)
Q Consensus       290 ldls~~--~~Dflv~S~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  366 (603)
                      +++..+  ++||+++|+|||++. |.|+|+|++|+ +.+..+.+.+.|+                               
T Consensus       280 ~~~~~~~~~~D~~~~s~hK~~~~-p~g~G~l~~~~~~~~~~l~~~~~g~-------------------------------  327 (456)
T 2z67_A          280 KLKKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGR-------------------------------  327 (456)
T ss_dssp             HHHHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSC-------------------------------
T ss_pred             HHHHhhCCCCCEEEEcCCCCcCC-CCCeEEEEEcCHHHHhhcCcCCCCC-------------------------------
Confidence            555444  899999999998665 89999999964 4544454433321                               


Q ss_pred             cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454          367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN  446 (603)
Q Consensus       367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~  446 (603)
                         ..+++    ++++.                                        .++..+...|++.+.++.+.+++
T Consensus       328 ---~~~~~----~~~~~----------------------------------------aal~~l~~~~~~~~~~~~~~~~~  360 (456)
T 2z67_A          328 ---ASATP----VVNTL----------------------------------------VSLLSMGSKNYLELVKNQKNSKK  360 (456)
T ss_dssp             ---BCSHH----HHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCH----HHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111    22221                                        45555555688999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcE-EeeCcccCccCCchhhh
Q 007454          447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENIS-LSYGSLHHIWFSDKYQK  525 (603)
Q Consensus       447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~-lr~G~~C~~~~~~~~~~  525 (603)
                      +|.++|.++++..     .+.+++|.      ++|+|++.. ++  . ...+.+.+.++||. +|.. . ..+       
T Consensus       361 ~l~~~L~~~~~~~-----g~~v~~~~------~~v~~~~~~-~~--~-~~~l~~~L~~~gi~~~rv~-~-~~g-------  416 (456)
T 2z67_A          361 LLDELLNDLSKKT-----GGKFLDVE------SPIASCISV-NS--D-PVEIAAKLYNLRVTGPRGI-K-KTD-------  416 (456)
T ss_dssp             HHHHHHHHHHHHS-----SCCBCCCC------CSSEEEEEC-SS--C-HHHHHHHHHHTTEESCEEE-C-TTC-------
T ss_pred             HHHHHHHhccccc-----CCEecCCC------CeEEEEEec-cc--H-HHHHHHHHHHcCCCcceEE-e-ecC-------
Confidence            9999998863100     14455542      788898831 11  1 22344444456652 2221 0 000       


Q ss_pred             hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                          .+. +..|.            ....+.||+|+++++|.|||+++++.|++++
T Consensus       417 ----~f~-G~~~~------------~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          417 ----HFG-NCYLG------------TYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             ----HHH-HTCSS------------CCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             ----ccc-ccccc------------ccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence                000 11121            1123689999999999999999999998764

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.95  E-value=3.5e-26  Score=238.24  Aligned_cols=331  Identities=9%  Similarity=0.062  Sum_probs=237.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-C
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS-E  187 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~-~  187 (603)
                      ..|+++.+-.++++.+++++.+.+...            .+      +   ..+ .+....+.++++|+.+++++|++ +
T Consensus         4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~------------~~------~---~~~-~~~~~~~~~~~~~~~la~~~g~~~~   61 (362)
T 3ffr_A            4 NKIYFTPGPSELYPTVRQHMITALDEK------------IG------V---ISH-RSKKFEEVYKTASDNLKTLLELPSN   61 (362)
T ss_dssp             CCEEECSSSCCCCTTHHHHHHHHHHTT------------TT------T---SCT-TSHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             cceeccCCCcCCCHHHHHHHHHHhcCC------------cc------C---cCC-CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            468899999999999997665432110            00      0   000 11223578899999999999996 4


Q ss_pred             CcEEEeccC-----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          188 NDYVYDYES-----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       188 ~e~vf~~es-----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ++++++...                       -+ ..+...++..|++++.++.++ ++.++.++|+  +.      ++|
T Consensus        62 ~~v~~~~g~t~al~~~~~~l~~~~~i~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~--~~------~~~  131 (362)
T 3ffr_A           62 YEVLFLASATEIWERIIQNCVEKKSFHCVNGSFS-KRFYEFAGELGREAYKEEAAF-GKGFYPADIT--VP------ADA  131 (362)
T ss_dssp             EEEEEESCHHHHHHHHHHHHCSSEEEEEECSHHH-HHHHHHHHHTTCEEEEEECCT-TCCCCGGGCC--CC------TTC
T ss_pred             cEEEEeCCchHHHHHHHHhccCCcEEEEcCcHHH-HHHHHHHHHhCCCeEEEecCC-CCCCCHHHHh--cc------CCc
Confidence            667664211                       11 123445677899999999873 6778888887  32      478


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhC-CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQEN-DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~-g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      ++|.+.+.+|.||.++|++.| ++|+++ |++|++|+++..+.  .++++..  +|++++|+||+||+ |.|+|++++++
T Consensus       132 ~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~--~~~~~~~--~d~~~~s~~K~~~~-~~G~g~~~~~~  206 (362)
T 3ffr_A          132 EIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY--PKFDWTK--IDSVFFSVQKCFGL-PAGLGVWILND  206 (362)
T ss_dssp             CEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS--SCCCTTS--CSEEEEETTSTTCC-CSCCEEEEEEH
T ss_pred             cEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCC--cccChhH--CcEEEEecccccCC-CCceEEEEECH
Confidence            999999999999999999976 489999 99999999998887  5777765  99999999999987 78999999999


Q ss_pred             CCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          323 STVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       323 ~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +.++.+.+...| |..........++   +    ..+      ++  ...+|++..+++++.                  
T Consensus       207 ~~~~~~~~~~~gg~~~~~~~~~~~~~---~----~~~------~~--~~~~~~~~~~~~~~~------------------  253 (362)
T 3ffr_A          207 RVIEKSKALLAKRKSIGTYHTIPSML---E----KAR------VN--QTPETPNAMNIFLLG------------------  253 (362)
T ss_dssp             HHHHHHHHHHHTTCCCCSTTSHHHHH---H----HHT------TT--CCSSCCCHHHHHHHH------------------
T ss_pred             HHHHHhhhccccCCCCcccccHHHHH---H----Hhh------cC--CCCCCchHHHHHHHH------------------
Confidence            877666654434 3221110000000   0    000      11  237888888887765                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL  481 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv  481 (603)
                                            .+++.+...|++.+.++.+.+++++.+.|.+++        .++++.|......+.++
T Consensus       254 ----------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~~~~~~~~~~~~~~  303 (362)
T 3ffr_A          254 ----------------------KVTGDMLQISADGIRKQTEEKAALINTYIESSK--------VFSFGVEDAKLRSMTTI  303 (362)
T ss_dssp             ----------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCS--------SEEESSSCGGGBCSSEE
T ss_pred             ----------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc--------CceeccCChhhcCCceE
Confidence                                  578877777899999999999999999998763        37887754323457899


Q ss_pred             EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454          482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL  561 (603)
Q Consensus       482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl  561 (603)
                      .|.+++ +.    .+++++|. ++||.++.|+.|.                                    ..+.||+|+
T Consensus       304 ~~~~~~-~~----~~~~~~l~-~~gi~~~~g~~~~------------------------------------~~~~iRis~  341 (362)
T 3ffr_A          304 VANTTM-LP----GEINKILE-PFDMAVGAGYGSK------------------------------------KETQIRIAN  341 (362)
T ss_dssp             EEEESS-CH----HHHHHHHG-GGTEEEEECSGGG------------------------------------TTTEEEEEC
T ss_pred             EEecCC-CH----HHHHHHHH-HCCeEEecCcccc------------------------------------CCCEEEEEC
Confidence            999986 22    23444554 4599999884431                                    125899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q 007454          562 GYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l  581 (603)
                      +.++|.|||++++++|++++
T Consensus       342 ~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          342 FPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             CTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.94  E-value=9.4e-26  Score=238.89  Aligned_cols=341  Identities=16%  Similarity=0.118  Sum_probs=248.7

Q ss_pred             hHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454           92 QIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL  171 (603)
Q Consensus        92 ~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~  171 (603)
                      ..+++|+ +||.+. ...+|||+++.++.++.+++++.+.+.                       +     .|+....+.
T Consensus        19 ~~~~~r~-~~~~~~-~~~~~l~~~~~~~~~~~v~~a~~~~~~-----------------------~-----~~~~~~~~~   68 (393)
T 1vjo_A           19 INDNQRL-QLEPLE-VPSRLLLGPGPSNAHPSVLQAMNVSPV-----------------------G-----HLDPAFLAL   68 (393)
T ss_dssp             CCCTTCC-CCCSCC-CCCCEECSSSCCCCCHHHHHHHSSCCC-----------------------C-----TTSHHHHHH
T ss_pred             ecchhhh-cCCccC-CccceeccCCCCCCCHHHHHHHhcccc-----------------------c-----ccCHHHHHH
Confidence            4577887 699885 457899999999999999999875421                       0     122224578


Q ss_pred             HHHHHHHHHHHcCCCCC-cEEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccC
Q 007454          172 ESAMKKRIMDFLNISEN-DYVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~-e~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      .+++++.+++++|++++ +++++..                      ..+...  +...++..|+++..+++++ ++.++
T Consensus        69 ~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d  147 (393)
T 1vjo_A           69 MDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFS  147 (393)
T ss_dssp             HHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCC
Confidence            88999999999999877 8876421                      112222  4556677899999999984 67899


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      .++|++.|...     ++++|+++..+|.||.++|++.+ ++|+++|+++++|.++..+.  .++++..+++|++++|+|
T Consensus       148 ~~~l~~~l~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~di~~~s~s  220 (393)
T 1vjo_A          148 LEELRTALETH-----RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQ  220 (393)
T ss_dssp             HHHHHHHHHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSS
T ss_pred             HHHHHHHHhhC-----CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccC--cCCcccccCccEEEEcCc
Confidence            99999999741     47899999999999999999855 68999999999999998887  588888889999999999


Q ss_pred             ccCCCCCCceEEEEEeCCCCcCcCC------CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          306 QIFGENPSGFGCLFVKKSTVPILVD------NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~~~L~p------~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      |+||. |.|+|+++++++.++.+..      .++.++. ..    ..+  .       +     +..  +..||+|..+.
T Consensus       221 K~l~~-~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~--~-------~-----~~~--~~~g~~~~~~~  278 (393)
T 1vjo_A          221 KGLGC-SPGASPFTMSSRAIEKLQRRRTKVANWYLDMN-LL----GKY--W-------G-----SER--VYHHTAPINLY  278 (393)
T ss_dssp             STTCS-CSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH-HH----HHH--H-------S-----TTC--CCCSCCCHHHH
T ss_pred             ccccC-CCceEEEEECHHHHHHHhccCCCCCceecCcH-hh----hhh--h-------c-----cCC--CCCCCCCHHHH
Confidence            98876 6799999999886654421      1111110 00    000  0       0     011  23458888877


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      +++.                                        ++++.+.+.+++.+.++.+.+.+++.+.|.++    
T Consensus       279 ~a~~----------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----  314 (393)
T 1vjo_A          279 YALR----------------------------------------EALRLIAQEGLANCWQRHQKNVEYLWERLEDI----  314 (393)
T ss_dssp             HHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred             HHHH----------------------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----
Confidence            6655                                        57777666688999999999999999999886    


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                        |   +++++|.. ...+.++.|.+++.    ++. .+.++|.+++||.++.|..|.                      
T Consensus       315 --g---~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~----------------------  362 (393)
T 1vjo_A          315 --G---LSLHVEKE-YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGEL----------------------  362 (393)
T ss_dssp             --T---CCBSSCGG-GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG----------------------
T ss_pred             --C---CcccCCcc-ccCCcEEEEEcCCC----CCHHHHHHHHHhhCCEEEecCcccc----------------------
Confidence              2   44555532 22467888888531    123 345555555599999885431                      


Q ss_pred             ccccccccccCCCCCCCEEEEe-cCCCCCHHHHHHHHHHHHHHHh
Q 007454          539 KSKSDNNRKDKANLGITVVTAS-LGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~S-lg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                    ..+.+|+| +++.++.||++++++.|+++++
T Consensus       363 --------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          363 --------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             --------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             --------------CCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence                          12589999 4677788899999999998863

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.94  E-value=2.3e-25  Score=233.93  Aligned_cols=333  Identities=12%  Similarity=0.055  Sum_probs=240.1

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC--C
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE--N  188 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~--~  188 (603)
                      ++.+.|..++++.+++++.+.+..                      +      ++....+.++++|+++++++|+++  +
T Consensus         4 ~~~~~gp~~~~~~v~~a~~~~~~~----------------------~------~~~~~~~~~~~~~~~la~~~~~~~~~~   55 (384)
T 3zrp_A            4 LLLHVGPTTIKEDVLVAGLENNVG----------------------F------TSKEFVEALAYSLKGLRYVMGASKNYQ   55 (384)
T ss_dssp             --CCSSCSCCCHHHHHHTTCCSCC----------------------T------TSHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred             eeccCCCCCCCHHHHHHhhccccc----------------------c------ccHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            567788889999999997653210                      0      111235788899999999999988  7


Q ss_pred             cEEEeccC---------------------chH--HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          189 DYVYDYES---------------------EAV--EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       189 e~vf~~es---------------------~sV--~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                      +++|+...                     ...  ..+...++..|++++.+++++ ++.++.++|++.|..     .+++
T Consensus        56 ~v~~~~g~t~al~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-----~~~~  129 (384)
T 3zrp_A           56 PLIIPGGGTSAMESVTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSP-GDYVKPGEVEEEVRK-----SEYK  129 (384)
T ss_dssp             EEEEESCHHHHHHHGGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCST-TCCCCHHHHHHHHHH-----SCEE
T ss_pred             EEEEcCCcHHHHHHHHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCC-CCCCCHHHHHHHHHh-----CCCc
Confidence            77765321                     111  123345567899999999985 778999999999975     2589


Q ss_pred             EEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      +|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||+|++ |.|+|+++++++.
T Consensus       130 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~g~~~~~~~~  206 (384)
T 3zrp_A          130 LVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGA--EEVKAEEWNVDVYLTASQKALGS-AAGLGLLLLSPKA  206 (384)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTT--SCCCTTTTTCSEEEEETTSTTCC-CSSEEEEEECHHH
T ss_pred             EEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccC--ccccccccCCCEEEecCcccccC-CCceEEEEECHHH
Confidence            99999999999999999865 58999999999999999887  68888888999999999998765 7899999999987


Q ss_pred             CcCc-CCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454          325 VPIL-VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA  403 (603)
Q Consensus       325 ~~~L-~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~  403 (603)
                      ++.+ ++....+..   ..... +....   ..++.    ...  ...||+|...++++.                    
T Consensus       207 ~~~~~~~~~~~~~~---~~~~~-~~~~~---~~~~~----~~~--~~~g~~~~~~~~a~~--------------------  253 (384)
T 3zrp_A          207 LSILDSQNSIAGYY---LDLRN-WLPVM---RGAEE----GKA--AYFATPPVHVILQLA--------------------  253 (384)
T ss_dssp             HHHHHHCCCSCCST---TCHHH-HHHHH---HHHHT----TCC--CCSSCCCHHHHHHHH--------------------
T ss_pred             HHHhcCCCCCCccc---ccHHH-HHHHH---Hhhcc----cCC--CcCCCCCHHHHHHHH--------------------
Confidence            6666 431111100   00000 00000   00000    000  123788888887765                    


Q ss_pred             hhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE
Q 007454          404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF  483 (603)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF  483 (603)
                                          ++++++...|++.+.++.+.+.++|.+.|.++.         ++++++......+.++.|
T Consensus       254 --------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~~~~~  304 (384)
T 3zrp_A          254 --------------------EAFRLIEKEGIENRIKRHTMVASAIRAGLEALG---------LEIVARRPESYSNTVTGV  304 (384)
T ss_dssp             --------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CCBSCSSGGGBCSSEEEE
T ss_pred             --------------------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC---------CeEccCcccccCccEEEE
Confidence                                588888777899999999999999999999861         445555311234678889


Q ss_pred             EEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCC
Q 007454          484 NVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGY  563 (603)
Q Consensus       484 nv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~  563 (603)
                      .+++.     +...+.+.+.++||.++.|.+|.                                   .  +.||+|++.
T Consensus       305 ~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~-----------------------------------~--~~iRi~~~~  342 (384)
T 3zrp_A          305 ILKVA-----DPQKVLAGTVNEGVEFAPGVHPA-----------------------------------F--KYFRIGHMG  342 (384)
T ss_dssp             ECSSS-----CHHHHHHHHHTTTCCCEECCCTT-----------------------------------C--CEEEEECCS
T ss_pred             ECCCC-----CHHHHHHHHHHCCEEEecCCCCC-----------------------------------c--CEEEEeccc
Confidence            98763     33444444455699998775431                                   1  589999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhhh
Q 007454          564 LANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       564 ~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      ++|.+||+++++.|++++++.
T Consensus       343 ~~~~e~i~~~~~~l~~~l~~~  363 (384)
T 3zrp_A          343 WVTPNDAIIAISVIERTLRKL  363 (384)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998764

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.94  E-value=9.7e-25  Score=231.89  Aligned_cols=348  Identities=12%  Similarity=0.018  Sum_probs=247.0

Q ss_pred             ccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          101 YYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       101 fp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      |+.+. ....||...+-..+++.+++++.+.+.                      .+      ++....+.++++|++++
T Consensus         6 ~~~~~-~~~~~~~~pgp~~~~~~v~~a~~~~~~----------------------~~------~~~~~~~~~~~~~~~la   56 (411)
T 3nnk_A            6 FSQLN-PPSRLLMGPGPINADPRVLRAMSSQLI----------------------GQ------YDPAMTHYMNEVMALYR   56 (411)
T ss_dssp             SCSCC-CCCCEEESSSCCCCCHHHHHHHTSCCC----------------------CT------TCHHHHHHHHHHHHHHH
T ss_pred             ccccC-CccceeecCCCCCCCHHHHHHhhcccc----------------------cc------ccHHHHHHHHHHHHHHH
Confidence            45553 456799999999999999999765211                      00      01123467889999999


Q ss_pred             HHcCCCCCc-EEEecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHh
Q 007454          181 DFLNISEND-YVYDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVV  235 (603)
Q Consensus       181 ~~lna~~~e-~vf~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~  235 (603)
                      +++|+++++ ++++..                      ..+..+  +...++..|++++.++++ .++.++.++|++.|.
T Consensus        57 ~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~  135 (411)
T 3nnk_A           57 GVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP-WGEVFTPDQVEDAVK  135 (411)
T ss_dssp             HHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHH
T ss_pred             HHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHh
Confidence            999998876 444321                      111222  456677889999999997 478889999999997


Q ss_pred             hcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          236 SKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                      ..     ++++|++.+.+|.||.++|++.| ++|+++|+++++|+++..+.  .++++..+++|++++|+||++++ |.|
T Consensus       136 ~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~g  207 (411)
T 3nnk_A          136 RI-----RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLGG-PSG  207 (411)
T ss_dssp             HH-----CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTCC-CSS
T ss_pred             hC-----CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccCC-CCc
Confidence            42     58999999999999999999855 68999999999999998887  68899889999999999997443 789


Q ss_pred             eEEEEEeCCCCcCcC------CCCCCCceec---cccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454          315 FGCLFVKKSTVPILV------DNTSSGMVSL---LPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR  385 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~------p~~~gG~v~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~  385 (603)
                      +|+++++++..+.+.      +.++||+...   ......++....     .. +...+.+  ++.||+|..+++++.  
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~-----~~-~~~~~~~--~~~~~~~~~~~~a~~--  277 (411)
T 3nnk_A          208 TSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGM-----VM-DYWGPER--LNHHTEATTALFGAR--  277 (411)
T ss_dssp             EEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHH-----HH-HHHSTTC--CCCSCCCHHHHHHHH--
T ss_pred             eEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHH-----HH-hhhcccc--CCCCCCCHHHHHHHH--
Confidence            999999987654333      3344422100   000000000000     00 0000112  468899999887765  


Q ss_pred             hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454          386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL  465 (603)
Q Consensus       386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl  465 (603)
                                                            .+++.....|++.+.++.+.++++|.+.|.++      |   
T Consensus       278 --------------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---  310 (411)
T 3nnk_A          278 --------------------------------------ECARLILQEGLDYGIARHKLHGDALVKGIQAM------G---  310 (411)
T ss_dssp             --------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---
T ss_pred             --------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---
Confidence                                                  57887777789999999999999999999986      2   


Q ss_pred             EEEeCCCCCCCCCCEEEEEEcc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          466 VKIYGPKIRFDRGPALAFNVFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       466 v~Iygp~~~~~rg~ivsFnv~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      ++++.|.. ...+.++.|.+++ .+.    .+++++|.+++||.++.|..                              
T Consensus       311 ~~~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~------------------------------  355 (411)
T 3nnk_A          311 LETFGDLK-HKMNNVLGVVIPQGING----DQARKLMLEDFGIEIGTSFG------------------------------  355 (411)
T ss_dssp             CCBCSCGG-GBCSSEEEEECCTTCCH----HHHHHHHHHHHSEEEEECCG------------------------------
T ss_pred             CEeCCCcc-cccccEEEEECCCCCCH----HHHHHHHHHhcCeEEeCccC------------------------------
Confidence            44555532 2357899999863 222    23455566777999997721                              


Q ss_pred             ccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhhh
Q 007454          545 NRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                            ....+.||+|+ ++.+|.+||+++++.|++++++.
T Consensus       356 ------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~  390 (411)
T 3nnk_A          356 ------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL  390 (411)
T ss_dssp             ------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence                  01125899998 88889999999999999998763

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.94  E-value=6.8e-25  Score=232.22  Aligned_cols=341  Identities=14%  Similarity=0.079  Sum_probs=242.1

Q ss_pred             hccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454          100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI  179 (603)
Q Consensus       100 efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I  179 (603)
                      -||.|. .+.+|+++.+..++++.+++++.+.+..                          +  ++......+.+.|+.|
T Consensus        10 ~~~~~~-~~~~~~~~~~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~l   60 (396)
T 2ch1_A           10 LRNPLI-IPEKIMMGPGPSNCSKRVLTAMTNTVLS--------------------------N--FHAELFRTMDEVKDGL   60 (396)
T ss_dssp             GSSCCC-CCCCBCCSSSSCCCCHHHHHHTTSCCCC--------------------------T--TCHHHHHHHHHHHHHH
T ss_pred             cCCCCC-CCcceeecCCCCCCCHHHHHHhcccccc--------------------------C--CChhHHHHHHHHHHHH
Confidence            388885 5788999999999999999997653210                          0  1112335678999999


Q ss_pred             HHHcCCCCC-cEEEecc-------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454          180 MDFLNISEN-DYVYDYE-------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKM  233 (603)
Q Consensus       180 a~~lna~~~-e~vf~~e-------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~  233 (603)
                      ++++|++++ +++++..                         +.+.. +...++..|++++.+++++ ++.++.++|++.
T Consensus        61 a~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~  138 (396)
T 2ch1_A           61 RYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPP-DRPFSLETLARA  138 (396)
T ss_dssp             HHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCT-TSCCCHHHHHHH
T ss_pred             HHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCC-CCCCCHHHHHHH
Confidence            999999887 7866421                         11221 2345677899999999884 778999999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      |...     ++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+.  .++++..+++|++++|+||+++. |
T Consensus       139 l~~~-----~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~d~~~~s~~K~~~~-~  210 (396)
T 2ch1_A          139 IELH-----QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-P  210 (396)
T ss_dssp             HHHH-----CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-C
T ss_pred             HHhC-----CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccC--CccchhhcCcCEEEEcCCccccC-C
Confidence            9741     47899999999999999999844 68999999999999998887  57888888999999999997665 7


Q ss_pred             CceEEEEEeCCCCcCcCCCC--CCC-ceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454          313 SGFGCLFVKKSTVPILVDNT--SSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK  389 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~--~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~  389 (603)
                      .|+|+++++++.++.+....  .++ ..... .....|.. .           ....  +..||++..+++++.      
T Consensus       211 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-----------~~~~--~~~~~~~~~~~~a~~------  269 (396)
T 2ch1_A          211 PGITPISISPKALDVIRNRRTKSKVFYWDLL-LLGNYWGC-Y-----------DEPK--RYHHTVASNLIFALR------  269 (396)
T ss_dssp             SSCEEEEECHHHHHHHHTCSSCCSCGGGCHH-HHHHHTTC-S-----------SSCC--CCCCCCCHHHHHHHH------
T ss_pred             CCeEEEEECHHHHHhhhhccCcccceEechH-HHHHhhhh-h-----------cccC--CCCCCCcHHHHHHHH------
Confidence            89999999987665443221  110 00000 00000100 0           0011  457888888876654      


Q ss_pred             cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454          390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY  469 (603)
Q Consensus       390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy  469 (603)
                                                        ++++.+.+.+++.+.++.+.++++|.+.|.++      |   ++++
T Consensus       270 ----------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~  306 (396)
T 2ch1_A          270 ----------------------------------EALAQIAEEGLENQIKRRIECAQILYEGLGKM------G---LDIF  306 (396)
T ss_dssp             ----------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------T---CCBS
T ss_pred             ----------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---Ceec
Confidence                                              57777655588999999999999999999886      2   4455


Q ss_pred             CCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454          470 GPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD  548 (603)
Q Consensus       470 gp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  548 (603)
                      +|......+.++.|.+++  +  ++.. +.++|++++||.++.|+.|.                                
T Consensus       307 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~g~~~~--------------------------------  350 (396)
T 2ch1_A          307 VKDPRHRLPTVTGIMIPK--G--VDWWKVSQYAMNNFSLEVQGGLGPT--------------------------------  350 (396)
T ss_dssp             SCSGGGBCTTEEEEECCT--T--CCHHHHHHHHHHHHCBCCBCCCGGG--------------------------------
T ss_pred             cCCccccCCceEEEEcCC--C--CCHHHHHHHHHHhCCEEEecCcccc--------------------------------
Confidence            553212345588998852  1  2233 45566666799998775320                                


Q ss_pred             CCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          549 KANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       549 ~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                          ..+.||+|+ ++.++.||++++++.|++++++
T Consensus       351 ----~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~  382 (396)
T 2ch1_A          351 ----FGKAWRVGIMGECSTVQKIQFYLYGFKESLKA  382 (396)
T ss_dssp             ----TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence                125899999 6778999999999999999875

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=1.1e-24  Score=225.83  Aligned_cols=321  Identities=12%  Similarity=0.090  Sum_probs=234.9

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC--CC
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS--EN  188 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~--~~  188 (603)
                      +|.++|.++.++.+++++.+.+.                       +    + .+....+.++++|+.|++++|++  ++
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~-----------------------~----~-~~~~~~~~~~~l~~~la~~~g~~~~~~   53 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMR-----------------------G----H-LDPEVLRVNRAIQERLAALFDPGEGAL   53 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCC-----------------------C----T-TCHHHHHHHHHHHHHHHHHHCCCTTCE
T ss_pred             ccCCCCCCCCCHHHHHHHhcccc-----------------------c----c-cCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence            57788999999999999765421                       0    0 12224567889999999999996  56


Q ss_pred             cEEEec-----------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          189 DYVYDY-----------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       189 e~vf~~-----------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                      +++++.                       ++.+. .+...++..|+++..+++++ ++.++.++|++.|...     +++
T Consensus        54 ~v~~t~g~t~a~~~~~~~~~~d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-----~~~  126 (353)
T 2yrr_A           54 VAALAGSGSLGMEAGLANLDRGPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPP-GEPVDPEAVARALKRR-----RYR  126 (353)
T ss_dssp             EEEESSCHHHHHHHHHHTCSCCCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCT-TSCCCHHHHHHHHHHS-----CCS
T ss_pred             eEEEcCCcHHHHHHHHHHhcCCcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHHhC-----CCC
Confidence            676632                       12222 23456677899999999984 7789999999999741     478


Q ss_pred             EEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      +|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||++++ |.|+|+++++++.
T Consensus       127 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~~~  203 (353)
T 2yrr_A          127 MVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGM--LPFSMRAMGVDYAFTGSQKCLSA-PPGLAPIAASLEA  203 (353)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEECCTTSTTCC-CSSCEEEEECHHH
T ss_pred             EEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccc--ccccccccCceEEEecCcccccC-CCceEEEEECHHH
Confidence            99999999999999999865 58999999999999998776  56777777899999999996554 7799999999987


Q ss_pred             CcCcCC--CCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          325 VPILVD--NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       325 ~~~L~p--~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      ++.++.  .++.....    .....                ...  ...||+|...++++.                   
T Consensus       204 ~~~l~~~~~~~~~~~~----~~~~~----------------~~~--~~~~~~~~~~~~a~~-------------------  242 (353)
T 2yrr_A          204 RKAFTGKRGWYLDLAR----VAEHW----------------ERG--GYHHTTPVLLHYALL-------------------  242 (353)
T ss_dssp             HHHCCCCSCSTTCHHH----HHHHH----------------TTC--CCSSCCCHHHHHHHH-------------------
T ss_pred             HHHhccCCCccccHHH----Hhhhh----------------hcC--CCCCCCCHHHHHHHH-------------------
Confidence            665652  11110000    00000                001  246788888776654                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           ++++++.+.|++.+.++.+.+++++.+.|.++      |   ++++++.  ...+.++.
T Consensus       243 ---------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~--~~~~~~~~  290 (353)
T 2yrr_A          243 ---------------------EALDLVLEEGVAARERRAREVYAWVLEELKAR------G---FRPYPKA--SPLPTVLV  290 (353)
T ss_dssp             ---------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS--SBCTTEEE
T ss_pred             ---------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC------C---CccccCc--cCCCeEEE
Confidence                                 57887777789999999999999999999885      1   5666643  12567888


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      |.+++  +  ++...+.+.+.++||.++.|..|.                                    ..+.||+|++
T Consensus       291 ~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~~~------------------------------------~~~~iRi~~~  330 (353)
T 2yrr_A          291 VRPPE--G--VDADRLVRALYAEGVAVAGGIGPT------------------------------------RGQVLRLGLM  330 (353)
T ss_dssp             EECCT--T--CCHHHHHHHHHHTTEECEECCGGG------------------------------------TTTCEEEECS
T ss_pred             EECCC--C--CCHHHHHHHHHHCCEEEeCCcccc------------------------------------CCCeEEEecC
Confidence            98852  1  234445454455699999886431                                    0257999999


Q ss_pred             CCCCHHHHH-HHHHHHHHHHh
Q 007454          563 YLANFEDVY-RLWAFVAQFLD  582 (603)
Q Consensus       563 ~~tt~eDVd-~l~~~l~~~l~  582 (603)
                      .++|.+|++ ++++.|+++++
T Consensus       331 ~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          331 GEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHh
Confidence            999999999 99999998875

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.94  E-value=1.2e-24  Score=225.96  Aligned_cols=317  Identities=12%  Similarity=0.010  Sum_probs=230.6

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcE
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY  190 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~  190 (603)
                      ||.++|.+++++.+++++.+.+..                          +  .+....+.+.+.|+.|++++|++++++
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~--------------------------~--~~~~~~~~~~~l~~~la~~~g~~~~~i   54 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLH--------------------------H--RTEAAREVFLKARGLLREAFRTEGEVL   54 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCC--------------------------T--TSHHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred             ccccCCCCCCCHHHHHHhccCCCC--------------------------c--cCHHHHHHHHHHHHHHHHHhCCCCceE
Confidence            899999999999999998764310                          0  111234677899999999999988778


Q ss_pred             EEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          191 VYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       191 vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                      +++.                         ++.+.. +...++..|+++..+++++ ++.++.++|++         ++++
T Consensus        55 ~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~---------~~~~  123 (352)
T 1iug_A           55 ILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPY-GDTPRPEDVAK---------EGYA  123 (352)
T ss_dssp             EEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCT-TCCCCTTTSCC---------SSCS
T ss_pred             EEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCC-CCCCCHHHHhc---------cCCc
Confidence            6642                         122333 3455667899999999874 66777776654         2578


Q ss_pred             EEEEeCccccccccccHHHH-HHHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          246 LFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +|++++.+|.||.++|++.+ ++|+++  |+++++|+++..+.  .++++..+++|++++|+||++++ |.|+|++++++
T Consensus       124 ~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~~g~G~~~~~~  200 (352)
T 1iug_A          124 GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGFVALSP  200 (352)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEEEEECH
T ss_pred             EEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccC--cceeccccCeeEEEecCcccccC-CCceeEEEECH
Confidence            99999999999999999866 589999  99999999998887  57888778899999999995543 88999999998


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      +.++.+++   ++..   ......+..       .+      ..  ...||+|..+++++.                   
T Consensus       201 ~~~~~~~~---~~~~---~~~~~~~~~-------~~------~~--~~~~~~~~~~~~a~~-------------------  240 (352)
T 1iug_A          201 RALERLKP---RGYY---LDLARELKA-------QK------EG--ESAWTPAINLVLAVA-------------------  240 (352)
T ss_dssp             HHHHTCCC---CSST---TCHHHHHHH-------HT------TT--CCSSCCCHHHHHHHH-------------------
T ss_pred             HHHHHhhC---CCce---eeHHHHHhh-------cc------cC--CCCCCCCHHHHHHHH-------------------
Confidence            87655654   1100   000000000       00      11  346888888876654                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           ++++.+.+. ++.+.++.+.++++|.+.|.++      |   +++++|.   ..+.++.
T Consensus       241 ---------------------~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~~~~  286 (352)
T 1iug_A          241 ---------------------AVLEEVLPR-LEEHLALKAWQNALLYGVGEEG------G---LRPVPKR---FSPAVAA  286 (352)
T ss_dssp             ---------------------HHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT------T---CEESCSS---BCTTCEE
T ss_pred             ---------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC------C---Ccccccc---cCCeEEE
Confidence                                 577776554 7889999999999999999885      2   5666653   3577999


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      |.+++  +  ++...+.+.+.++||.++.|..+                                    ...+.||+|++
T Consensus       287 ~~~~~--~--~~~~~~~~~l~~~gi~v~~~~~~------------------------------------~~~~~iRi~~~  326 (352)
T 1iug_A          287 FYLPE--G--VPYARVKEAFAQRGAVIAGGQGP------------------------------------LKGKVFRLSLM  326 (352)
T ss_dssp             EECCT--T--CCHHHHHHHHHTTTEECEECCGG------------------------------------GTTTEEEECCC
T ss_pred             EEcCC--C--CCHHHHHHHHHHCCEEEEeCCCc------------------------------------cCCCEEEEEcc
Confidence            99873  1  23344444445669999987521                                    01258999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q 007454          563 YLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       563 ~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .++|.+||+++++.|++++.+
T Consensus       327 ~~~~~~~i~~~~~~l~~~~~~  347 (352)
T 1iug_A          327 GAYDRYEALGVAGMFREVLEE  347 (352)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998754

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.3e-25  Score=238.60  Aligned_cols=316  Identities=10%  Similarity=0.023  Sum_probs=219.4

Q ss_pred             cccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcC--
Q 007454          156 GNLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRG--  210 (603)
Q Consensus       156 aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~G--  210 (603)
                      +|++..|. +....++++++|+++++++|++ ++++|+.. ++++                      ..+...++..|  
T Consensus        22 ~~~~~~h~-~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~   99 (379)
T 3ke3_A           22 TDRALNHM-SKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQLTIDEDCLIIRNGWFSYRWTQILEKGKFA   99 (379)
T ss_dssp             CTTSCCTT-SHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHHCTTCEEEEEECSHHHHHHHHHHHHHCCS
T ss_pred             cCCCCCCC-CHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhCCCCCeEEEEeCCchhHHHHHHHHHhCCC
Confidence            56655443 5556789999999999999997 56666421 1111                      11223444455  


Q ss_pred             CEEEEEeccCC--------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEe
Q 007454          211 ARVMSAEFSWP--------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILID  278 (603)
Q Consensus       211 a~V~~~~~~~~--------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvD  278 (603)
                      +++..++.++.        .+.++.++|++.|...     ++++|++++.+|.||.++|   ++.| ++|+++|+++++|
T Consensus       100 ~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~-----~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D  174 (379)
T 3ke3_A          100 KSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKED-----KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID  174 (379)
T ss_dssp             SEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHH-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CceEEEeccccccccccCCCCCCCHHHHHHHHhhc-----CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE
Confidence            47888876421        1368999999999632     5889999999999999999   8755 5799999999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCC
Q 007454          279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE  358 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e  358 (603)
                      ++|. |.  .++++..+++|++++|+||++|+ |.|+|+|+++++.++.+.+....+..   ... ..|...-   ..++
T Consensus       175 ~~~~-g~--~~~~~~~~~~d~~~~s~~K~l~~-~~g~g~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~~~---~~~~  243 (379)
T 3ke3_A          175 CIAS-GC--VWLDMKELGIDVLISAPQKGWSS-TPCAGLVMLSAAAIKKVESTESNCFS---LDL-KQWLTIM---RAYE  243 (379)
T ss_dssp             CTTC-TT--CCCCHHHHTCSEEEECTTTTTCS-CCCEEEEEECHHHHHHHHTCCCSCST---TCH-HHHHHHH---HHHH
T ss_pred             eccc-CC--ccccccccCCCEEEecchhhcCC-CCceEEEEECHHHHHhhhcCCCCcee---ecH-HHHHHHH---Hhhh
Confidence            9998 76  58998888999999999998876 88999999999877656542111100   000 0000000   0000


Q ss_pred             cccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHH
Q 007454          359 PEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMIS  438 (603)
Q Consensus       359 ~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~  438 (603)
                      .+   .+.   -.+|+|.++++++.                                        ++++.+.+.|++.+.
T Consensus       244 ~g---~~~---~~~t~~~~~~~a~~----------------------------------------aal~~~~~~g~~~~~  277 (379)
T 3ke3_A          244 NG---GHA---YHATMPTDSLRQFR----------------------------------------DAILEAKEIGFDILR  277 (379)
T ss_dssp             TT---SCC---CSSCCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHH
T ss_pred             cc---CCC---CCCCCCHHHHHHHH----------------------------------------HHHHHHHHhcHHHHH
Confidence            00   000   13589999988876                                        689988888999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCc
Q 007454          439 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHI  517 (603)
Q Consensus       439 ~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~  517 (603)
                      +|.+.|+++|++.|.++      |   ++++++.  ..+.+ ++.|.+.+.+.      .+.+.+.++||.++.|..|..
T Consensus       278 ~~~~~l~~~l~~~l~~~------g---~~~~~~~--~~~~~~i~~~~~~~~~~------~~~~~L~~~Gi~v~~g~~~~~  340 (379)
T 3ke3_A          278 DAQWELGNRVRKVLTDK------G---IESVAAE--GFEAPGVVVSYTERDDM------HKGSAFAEAGLQIAAGVPLKV  340 (379)
T ss_dssp             HHHHHHHHHHHHHHHHT------T---CCBSBCT--TCBCSSEEEEECSCHHH------HSSHHHHHTTCCCEECCCCSS
T ss_pred             HHHHHHHHHHHHHHHHc------C---CEecCCc--cccCceEEEEccCCcch------HHHHHHHHCCeEEeCCccccc
Confidence            99999999999999986      2   4455553  23555 45555433211      113445678999999987653


Q ss_pred             cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +.                               ....+.+|+|++.++|.+||+++++.|++++++
T Consensus       341 ~~-------------------------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~  375 (379)
T 3ke3_A          341 GE-------------------------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE  375 (379)
T ss_dssp             CC-------------------------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred             cc-------------------------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence            21                               112368999999999999999999999998765

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.93  E-value=3.2e-24  Score=228.21  Aligned_cols=337  Identities=12%  Similarity=0.048  Sum_probs=238.3

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      ..|+...+-..+++.+++++.+...                      .      .+.....+.+++.|+.+++++|++++
T Consensus        11 ~~~~~~p~p~~~~~~v~~a~~~~~~----------------------~------~~~~~~~~~~~~l~~~la~~~g~~~~   62 (416)
T 3isl_A           11 LRTIMTPGPVEVDPRVLRVMSTPVV----------------------G------QFDPAFTGIMNETMEMLRELFQTKNR   62 (416)
T ss_dssp             CCEECSSSSCCCCHHHHHHTTSCCC----------------------C------TTSHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             cceeecCCCcCcCHHHHHHhcccCC----------------------C------CccHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3455566666778888887654210                      0      01112357788999999999999887


Q ss_pred             cEE-Eecc----------------------CchHHH--HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          189 DYV-YDYE----------------------SEAVEA--MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       189 e~v-f~~e----------------------s~sV~~--~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      +++ +...                      ......  +...++..|++++.++++ +++.++.++|++.|...     +
T Consensus        63 ~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~~-----~  136 (416)
T 3isl_A           63 WAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECE-WGTVFDPEDIIREIKKV-----K  136 (416)
T ss_dssp             EEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHHHH-----C
T ss_pred             cEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEecC-CCCCCCHHHHHHHHhhC-----C
Confidence            664 4311                      111122  455677889999999998 47789999999999731     5


Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +++|++++.+|.||.+.|++.| ++|+++|+++++|+++..+.  .++++..+++|++++|+||++++ |.|+|++++++
T Consensus       137 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~l~g-~~g~g~~~~~~  213 (416)
T 3isl_A          137 PKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGG--CEVKVDEWKIDAAIGGTQKCLSV-PSGMAPITYNE  213 (416)
T ss_dssp             CSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCC-CSSEEEEEECH
T ss_pred             CcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccC--CCcchhhcCCCEEEecCccccCC-CCCeEEEEECH
Confidence            7999999999999999999865 58999999999999998887  68899889999999999997433 88999999999


Q ss_pred             CCCcCcCCC---------------CCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhc
Q 007454          323 STVPILVDN---------------TSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS  387 (603)
Q Consensus       323 ~~~~~L~p~---------------~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~  387 (603)
                      +.++.+.+.               ..||... ...   ++....     +... .....  ++.||+|..+++++.    
T Consensus       214 ~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~-~~~---~~~~~~-----~~~~-~~~~~--~~~~~~~~~~~~a~~----  277 (416)
T 3isl_A          214 RVADVIAARKKVERGIATQADRAALSGNRPI-TSN---YFDLSQ-----LEDY-WSERR--LNHHTEATTMLYALR----  277 (416)
T ss_dssp             HHHHHHHTC------------------CCCC-SCS---TTCHHH-----HHHH-TSTTC--CCSSCCCHHHHHHHH----
T ss_pred             HHHHHhhccccccccccccccchhccCCCCC-Ccc---ccchHH-----HHhh-hcccC--CCCCCCCHHHHHHHH----
Confidence            876655532               1222210 000   000000     0000 00122  578899999887765    


Q ss_pred             CccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEE
Q 007454          388 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVK  467 (603)
Q Consensus       388 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~  467 (603)
                                                          ++++.+...|++.+.++.+.++++|.+.|.++      |   ++
T Consensus       278 ------------------------------------~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------g---~~  312 (416)
T 3isl_A          278 ------------------------------------EGVRLVLEEGLETRFERHRHHEAALAAGIKAM------G---LR  312 (416)
T ss_dssp             ------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------T---CC
T ss_pred             ------------------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc------C---CE
Confidence                                                58888877789999999999999999999985      2   45


Q ss_pred             EeCCCCCCCCCCEEEEEEc-cCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454          468 IYGPKIRFDRGPALAFNVF-DWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR  546 (603)
Q Consensus       468 Iygp~~~~~rg~ivsFnv~-~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  546 (603)
                      +++|.. ...+.++.|.++ +.+.    .+++++|.+++||.++.|..                                
T Consensus       313 ~~~~~~-~~~~~~~~~~~~~~~~~----~~l~~~L~~~~gi~v~~g~~--------------------------------  355 (416)
T 3isl_A          313 LFGDDS-CKMPVVTCVEIPGGIDG----ESVRDMLLAQFGIEIASSFG--------------------------------  355 (416)
T ss_dssp             BCSCGG-GBCTTEEEEECCTTCCH----HHHHHHHHHHHCEECBCCCS--------------------------------
T ss_pred             eccCcc-ccCCcEEEEeCCCCCCH----HHHHHHHHHhCCEEEecCCC--------------------------------
Confidence            566542 234789999986 3322    23455566666999987741                                


Q ss_pred             ccCCCCCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhh
Q 007454          547 KDKANLGITVVTASLGYLANFED-VYRLWAFVAQFLDAD  584 (603)
Q Consensus       547 ~~~~~~~~g~VR~Slg~~tt~eD-Vd~l~~~l~~~l~~~  584 (603)
                          ....+.||+|++.++|.+| |+++++.|++++++.
T Consensus       356 ----~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~  390 (416)
T 3isl_A          356 ----PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRH  390 (416)
T ss_dssp             ----TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred             ----CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence                0112689999988877777 999999999998763

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=2.2e-23  Score=219.17  Aligned_cols=331  Identities=13%  Similarity=0.090  Sum_probs=229.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS-  186 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~-  186 (603)
                      ...|+.+.+...+++.+++++.+....                   + .+|.        ....+.+.|++++++++.. 
T Consensus         4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~-------------------~-~~~~--------~~~~~~~~~~~l~~~~~~~~   55 (385)
T 2bkw_A            4 SVDTLLIPGPIILSGAVQKALDVPSLG-------------------H-TSPE--------FVSIFQRVLKNTRAVFKSAA   55 (385)
T ss_dssp             CCCEECSSSSCCCCHHHHHTTSCCCCC-------------------T-TSHH--------HHHHHHHHHHHHHHHTTCCG
T ss_pred             ccceeecCCCcCchHHHHHHHhccccc-------------------c-CCHH--------HHHHHHHHHHHHHHHhCCCC
Confidence            356888888888899999987653210                   0 1221        1234556777777777753 


Q ss_pred             ---CCcEEEeccC-ch--------------------------HHHHHHHHHHcCCEEEEEec-cCCccccCHHHHHHHHh
Q 007454          187 ---ENDYVYDYES-EA--------------------------VEAMIRTSEKRGARVMSAEF-SWPRLRINSEKLRKMVV  235 (603)
Q Consensus       187 ---~~e~vf~~es-~s--------------------------V~~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~  235 (603)
                         +++++|+... ++                          ...+...++..|++++.+++ + .++.++.++|+++|.
T Consensus        56 ~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~  134 (385)
T 2bkw_A           56 ASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLS  134 (385)
T ss_dssp             GGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHH
T ss_pred             CCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC-CCCCCCHHHHHHHHh
Confidence               5677664211 00                          11112455677999999988 6 478899999999997


Q ss_pred             hcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          236 SKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      .     .++++|++++.+|.||.++|++.| ++|+++  |+++++|+++..+.  .++++..+++|++++|+||++++ |
T Consensus       135 ~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~d~~~~s~~K~~~~-~  206 (385)
T 2bkw_A          135 Q-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFDEWGVDFALTASQKAIGA-P  206 (385)
T ss_dssp             H-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-C
T ss_pred             c-----CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC--ccccccccCceEEEecCcccccc-C
Confidence            4     257899999999999999999865 589999  99999999999887  57888888999999999997654 8


Q ss_pred             CceEEEEEeCCCCc-CcC------CCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454          313 SGFGCLFVKKSTVP-ILV------DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR  385 (603)
Q Consensus       313 ~G~G~L~vkk~~~~-~L~------p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~  385 (603)
                      .|+|+++++++.++ .++      +..+++...      . +....   ..++.    ...  ...||+|..+++++.  
T Consensus       207 ~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~-~~~~~---~~~~~----~~~--~~~~~~~~~~~~a~~--  268 (385)
T 2bkw_A          207 AGLSISLCSSRFMDYALNDSKNGHVHGYFSSLR------R-WTPIM---ENYEA----GKG--AYFATPPVQLINSLD--  268 (385)
T ss_dssp             SCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHH------H-HHHHH---HHHHT----TCC--CCSSCCCHHHHHHHH--
T ss_pred             CcceEEEEcHHHHHHHHhhccCCCCCceeecHH------H-HhhHH---Hhhhc----cCC--CCCCCCCHHHHHHHH--
Confidence            89999999987655 453      122222110      0 00000   00000    000  124688888877765  


Q ss_pred             hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCCc
Q 007454          386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL-MKLQHPNTEGNA  464 (603)
Q Consensus       386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L-~~L~h~~~~g~p  464 (603)
                                                            ++++.+.+.|++.+.++.+.++++|.+.| .++      |  
T Consensus       269 --------------------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~------g--  302 (385)
T 2bkw_A          269 --------------------------------------VALKEILEEGLHKRWDLHREMSDWFKDSLVNGL------Q--  302 (385)
T ss_dssp             --------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT------C--
T ss_pred             --------------------------------------HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc------C--
Confidence                                                  58888776789999999999999999999 875      1  


Q ss_pred             eEEEeCCCCCC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccc
Q 007454          465 LVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD  543 (603)
Q Consensus       465 lv~Iygp~~~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~  543 (603)
                       ++++.|.... ..++++.|.+++      ..+++++| .++||.++.|..|.                           
T Consensus       303 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l-~~~gi~v~~g~~~~---------------------------  347 (385)
T 2bkw_A          303 -LTSVSRYPSNMSAHGLTAVYVAD------PPDVIAFL-KSHGVVIAGGIHKD---------------------------  347 (385)
T ss_dssp             -CEESSCSSSTTBCSSCEEEECSC------HHHHHHHH-HHTTEECBCCCCTT---------------------------
T ss_pred             -ceecccCcccccCCceEEEecCC------HHHHHHHH-HHCCeEEeCCCCcc---------------------------
Confidence             5666543212 368899999864      12344445 56899998875431                           


Q ss_pred             cccccCCCCCCCEEEEe-cC---CCCCHHHHHHHHHHHHHHHh
Q 007454          544 NNRKDKANLGITVVTAS-LG---YLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       544 ~~~~~~~~~~~g~VR~S-lg---~~tt~eDVd~l~~~l~~~l~  582 (603)
                              ...+.+|+| ++   +.+|.|||+++++.|+++++
T Consensus       348 --------~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~  382 (385)
T 2bkw_A          348 --------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ  382 (385)
T ss_dssp             --------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             --------cCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence                    012589999 77   46899999999999998864

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.92  E-value=7.5e-23  Score=213.01  Aligned_cols=331  Identities=12%  Similarity=0.060  Sum_probs=227.4

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC--
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE--  187 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~--  187 (603)
                      +|+.+.|....++.+++++.+.+                       +     +.++......+++.|++|++++|.+.  
T Consensus         5 ~~~~~~gp~~~~~~v~~a~~~~~-----------------------~-----~~~~~~~~~~~~~l~~~la~~~g~~~~~   56 (366)
T 1m32_A            5 YLLLTPGPLTTSRTVKEAMLFDS-----------------------C-----TWDDDYNIGVVEQIRQQLTALATASEGY   56 (366)
T ss_dssp             CEECSSSSCCCCHHHHHTTCCCC-----------------------C-----TTSHHHHTTTHHHHHHHHHHHHCSSSSE
T ss_pred             cccccCCCcCCCHHHHHHHhhhh-----------------------c-----CCCHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence            56666776677888888865421                       0     00111112456789999999999322  


Q ss_pred             CcEEEecc-----------------------CchHHH-HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          188 NDYVYDYE-----------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       188 ~e~vf~~e-----------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ++++++..                       ...... +...++..|+++..+++++ .+.++.++|++.|..+    ++
T Consensus        57 ~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~----~~  131 (366)
T 1m32_A           57 TSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNAD----PT  131 (366)
T ss_dssp             EEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHC----TT
T ss_pred             cEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcC----CC
Confidence            24655321                       011111 3445667799999999874 7789999999999752    24


Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      ++++.+++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||++++ |.|+|++++++
T Consensus       132 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~di~~~s~~K~~~~-~~g~G~~~~~~  208 (366)
T 1m32_A          132 ISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHIDYLISSANKCIQG-VPGFAFVIARE  208 (366)
T ss_dssp             CCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CSSEEEEEEEH
T ss_pred             eEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccC--cCccccccCccEEEecCcccccC-CCceEEEEECH
Confidence            7899999999999999999855 58999999999999998887  57888878899999999997744 88999999999


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      +.++.+.+... +..   ......+..       +.    ....  ...+|+|..+++++.                   
T Consensus       209 ~~~~~~~~~~~-~~~---~~~~~~~~~-------~~----~~~~--~~~~~~~~~~~~a~~-------------------  252 (366)
T 1m32_A          209 QKLAACKGHSR-SLS---LDLYAQWRC-------ME----DNHG--KWRFTSPTHTVLAFA-------------------  252 (366)
T ss_dssp             HHHTTCTTCCS-CST---TCHHHHHHH-------HH----HTTT--CCSSCCCHHHHHHHH-------------------
T ss_pred             HHHHhhcCCCC-Ccc---ccHHHHHhh-------hc----ccCC--CCCCCCCHHHHHHHH-------------------
Confidence            87766654211 100   000000000       00    0000  124677777776654                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL  481 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv  481 (603)
                                           ++++.+.+.| ++.+.++.+.+.++|.+.|.++      |   +++++|.. ...+.++
T Consensus       253 ---------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~~~-~~~~~~~  301 (366)
T 1m32_A          253 ---------------------QALKELAKEGGVAARHQRYQQNQRSLVAGMRAL------G---FNTLLDDE-LHSPIIT  301 (366)
T ss_dssp             ---------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT------T---CCBSSCGG-GBCSSEE
T ss_pred             ---------------------HHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC------C---CeeccCch-hcCceEE
Confidence                                 5888777777 8899999999999999999876      1   34555421 1234488


Q ss_pred             EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454          482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL  561 (603)
Q Consensus       482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl  561 (603)
                      .|.+++..+  +....+.+.+.++||.++.|..|.                                     .+.+|+|+
T Consensus       302 ~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~-------------------------------------~~~iRi~~  342 (366)
T 1m32_A          302 AFYSPEDPQ--YRFSEFYRRLKEQGFVIYPGKVSQ-------------------------------------SDCFRIGN  342 (366)
T ss_dssp             EEECCCCTT--CCHHHHHHHHHHTTEECEECCCSS-------------------------------------SCEEEEEC
T ss_pred             EEEcCccCC--CCHHHHHHHHHHCCEEEECCcCCC-------------------------------------CCEEEEec
Confidence            998874111  233445444456699999876541                                     15899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 007454          562 GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~  582 (603)
                      +.++|.+||+++++.|+++++
T Consensus       343 ~~~~~~~~i~~~~~~l~~~~~  363 (366)
T 1m32_A          343 IGEVYAADITALLTAIRTAMY  363 (366)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCT
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998864

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.92  E-value=1.4e-23  Score=220.65  Aligned_cols=328  Identities=12%  Similarity=0.081  Sum_probs=230.0

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      ++|+-+.+-.++++.+++++.+.+..                           + ++....+.++++|+.+++++|++++
T Consensus        19 ~~~~~~pgp~~~~~~v~~a~~~~~~~---------------------------~-~~~~~~~~~~~~~~~la~~~g~~~~   70 (376)
T 3f0h_A           19 GMLNFTVGPVMSSEEVRAIGAEQVPY---------------------------F-RTTEFSSTMLENEKFMLEYAKAPEG   70 (376)
T ss_dssp             SCEECSSSSCCCCHHHHHHHTSCCCC---------------------------C-SSHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             CceeecCCCCCCcHHHHHHhcCCCCC---------------------------C-CCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            46677788889999999998653210                           0 0112346788999999999999764


Q ss_pred             -cEEE-ecc-CchH-----------------------HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          189 -DYVY-DYE-SEAV-----------------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       189 -e~vf-~~e-s~sV-----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                       +++| +.. ++++                       ..+...+...|+++..+++++ +..++.++|++.+.      +
T Consensus        71 ~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~~------~  143 (376)
T 3f0h_A           71 SKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH-GKKLTKEKLYEYDN------Q  143 (376)
T ss_dssp             CEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT-TCCCCHHHHHTTTT------S
T ss_pred             ceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHhhc------c
Confidence             6665 211 1111                       112345667799999999874 67889999988664      3


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++|++++.+|.||.++|++.| ++|+++|+++++|++|.++.  .++++..+++|++++|+||+||+ |.|+|+++++
T Consensus       144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~d~~~~s~~K~l~~-~~G~g~~~~~  220 (376)
T 3f0h_A          144 NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA--DPFNMNECGADVMITGSQKVLAC-PPGISVIVLA  220 (376)
T ss_dssp             CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHTCSEEEEETTTTTCC-CSSCEEEEEC
T ss_pred             CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccC--ccccccccCccEEEecCcccccC-CCceEEEEEC
Confidence            68999999999999999999866 58999999999999999887  57888888899999999999986 7799999999


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      ++..+.+.+...++...   .....+  ..     ..      ..  ....|++...++++.                  
T Consensus       221 ~~~~~~~~~~~~~~~~~---~~~~~~--~~-----~~------~~--~~~~~~~~~~~~a~~------------------  264 (376)
T 3f0h_A          221 PRGVERVEKSKVRTMYF---DLKDAL--KN-----QE------RG--QTPFTPAVGILLQIN------------------  264 (376)
T ss_dssp             HHHHHHHHTCCCCCSTT---CHHHHH--HH-----HT------TT--CCSSCCCHHHHHHHH------------------
T ss_pred             HHHHHHhhcCCCCceee---cHHHHH--hh-----cc------cC--CCCCCCcHHHHHHHH------------------
Confidence            98766555422211100   000000  00     00      00  012344444444443                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA  480 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i  480 (603)
                                            ++++.+.+. |++.+.++.+.+.++|.+.|.++.         ++++.+.   ....+
T Consensus       265 ----------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---------~~~~~~~---~~~~~  310 (376)
T 3f0h_A          265 ----------------------ERLKEIKKHGGADAEVARIASQAADFRAKIKDLP---------FELVSES---PANGV  310 (376)
T ss_dssp             ----------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS---------EEECCSS---BBTTE
T ss_pred             ----------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC---------CccCccc---cCceE
Confidence                                  688888777 589999999999999999998752         5666542   34567


Q ss_pred             EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe
Q 007454          481 LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS  560 (603)
Q Consensus       481 vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S  560 (603)
                      +.+...+.++    .++.++|.++.||.++.|.-                                    ....+.+|+|
T Consensus       311 ~~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~------------------------------------~~~~~~lRis  350 (376)
T 3f0h_A          311 TSVHPTTANA----YDIFLKLKDEYGIWICPNGG------------------------------------EMKDTIFRVG  350 (376)
T ss_dssp             EEEEESSSCH----HHHHHHHHHHSSEECEECCG------------------------------------GGTTTCEEEE
T ss_pred             EEEeCCCCCH----HHHHHHHHHhCCEEEecCcc------------------------------------ccCCCEEEEe
Confidence            7776544332    23455666666999987720                                    0112589999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          561 LGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       561 lg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      ++.++|.|||+++++.|++++++.
T Consensus       351 ~~~~~t~e~i~~~~~~l~~~l~~~  374 (376)
T 3f0h_A          351 HIGALTHEDNTTLVNAFKDLQKRN  374 (376)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988653

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.91  E-value=1.1e-23  Score=220.75  Aligned_cols=331  Identities=13%  Similarity=0.059  Sum_probs=226.8

Q ss_pred             CCceeeec-CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHH-HHHHcC
Q 007454          107 SNHTCLDY-FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR-IMDFLN  184 (603)
Q Consensus       107 ~~~vYLDy-aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~-Ia~~ln  184 (603)
                      ++.+|||+ ++.+++++.+++++.+.+...        +..       ..+|.   +..+......+.+.|+. |++++|
T Consensus         7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~--------~~~-------~~~~~---~~~~~~~~~~~~~l~~~~la~~~~   68 (371)
T 2e7j_A            7 KDFINIDPLQTGGKLTEEARQALLEWGDGY--------SVC-------DFCTT---GRLDEIKTPPIHDFIHNQLPKFLG   68 (371)
T ss_dssp             -CCEECCHHHHTCCCCHHHHHHHHHC--------------------------------------CCHHHHHHTHHHHHTT
T ss_pred             CCcEEecccccCCCCCHHHHHHHHHHHhhc--------ccC-------Ccccc---ccchhhHHHHHHHHHHHHHHHHcC
Confidence            46799999 778899999999988765321        000       00110   11111123456789999 999999


Q ss_pred             CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEe--ccCCccccCHHHHHHHHhhcCCC
Q 007454          185 ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAE--FSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       185 a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~--~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++  +++|+... +++                     ......++..|+++..++  .+ +++.++.++|++.|...+. 
T Consensus        69 ~~--~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~-  144 (371)
T 2e7j_A           69 CD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY-PDYAITPENFAQTIEETKK-  144 (371)
T ss_dssp             SS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT-TTCCCCHHHHHHHHHHHTT-
T ss_pred             CC--EEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC-CCCCcCHHHHHHHHHhhcc-
Confidence            87  77765331 121                     122333567899999998  76 3678999999999974211 


Q ss_pred             CCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLF  319 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~  319 (603)
                      .+++++|++++.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||+|+. |.|+|+++
T Consensus       145 ~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~--~~~~~~~~~~di~~~s~sK~~~~-~~~~G~~~  221 (371)
T 2e7j_A          145 RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGSGHKSMAA-SGPIGVMG  221 (371)
T ss_dssp             TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEEHHHHSSC-CSSCEEEE
T ss_pred             cCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC--CCCChhhcCCCEEEecCCcCCCC-CCCcEEEE
Confidence            1368999999999999999999855 58999999999999998887  46777777899999999998775 77999999


Q ss_pred             EeCCCCcC-cCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          320 VKKSTVPI-LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       320 vkk~~~~~-L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      ++++.++. +.+...++...                          ..  ++.||++...++++.               
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~~~~~~~a~~---------------  258 (371)
T 2e7j_A          222 MKEEWAEIVLRRSEKYKNKE--------------------------VE--LLGCTARGATIITLM---------------  258 (371)
T ss_dssp             ECTTTTTTTTCBCSSCTTSB--------------------------GG--GTTCCCCSHHHHHHH---------------
T ss_pred             EechhhhhhccccccCcccc--------------------------cc--cccCCcCHHHHHHHH---------------
Confidence            99988776 66533321100                          01  357888888776654               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG--RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~--~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                               .+++++..    .+.++.  +.+++++.+.|.++      |   +++++|..  .
T Consensus       259 -------------------------~~l~~~~~----~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~~~--~  298 (371)
T 2e7j_A          259 -------------------------ASFPHVRE----RIKRWDEEVEKARRFAAEMEKL------G---IKQLGDNP--H  298 (371)
T ss_dssp             -------------------------HHHHHHHH----HGGGHHHHHHHHHHHHHHHHHT------T---CEEESSSS--C
T ss_pred             -------------------------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc------C---cEEecCCC--c
Confidence                                     46766554    566777  88999999999876      1   56777632  2


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      +++++.|.++  +     ...+.+.+.++||.++. ...                 ...       .      .+...+.
T Consensus       299 ~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~-~~~-----------------~~~-------~------~g~~~~~  340 (371)
T 2e7j_A          299 NHDLMFFHAE--V-----LYEISKKAKGGRFFLYR-ELK-----------------SRK-------I------HGIKPGL  340 (371)
T ss_dssp             CSSEEEEECH--H-----HHHHHHHSSSGGGHHHH-HHH-----------------HTT-------E------ECSCTTC
T ss_pred             cCceEEEECC--C-----HHHHHHHHHHCCEEEEe-ccc-----------------ccc-------c------cCCCCCc
Confidence            5789999886  1     23344444467887642 000                 000       0      0111368


Q ss_pred             EE-EecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454          557 VT-ASLGYL-ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       557 VR-~Slg~~-tt~eDVd~l~~~l~~~l~~  583 (603)
                      || +|++.+ +|.+||+++++.|++++++
T Consensus       341 iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          341 TRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             CSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            99 999999 9999999999999998753

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.91  E-value=9.7e-23  Score=214.54  Aligned_cols=336  Identities=15%  Similarity=0.107  Sum_probs=237.9

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      +.-||++.+-.++++.+++++.+.+.                      .    +  +.....+.+++.|+.+++++|+++
T Consensus        22 ~~~~~~~p~p~~~~~~v~~a~~~~~~----------------------~----~--~~~~~~~~~~~l~~~la~~~~~~~   73 (393)
T 3kgw_A           22 PTRLLLGPGPSNLAPRVLAAGSLRMI----------------------G----H--MQKEMLQIMEEIKQGIQYVFQTRN   73 (393)
T ss_dssp             CCCEECSSSCCCCCHHHHHHTTCCCC----------------------C----T--TSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccceeccCCCCCCCHHHHHHhccccc----------------------C----c--ccHHHHHHHHHHHHHHHHHhCCCC
Confidence            35689999999999999999765211                      0    0  001124677889999999999976


Q ss_pred             Cc-EEEeccC----------------------chH--HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          188 ND-YVYDYES----------------------EAV--EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       188 ~e-~vf~~es----------------------~sV--~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      .+ ++|+...                      .+.  ..+...++..|+++..+++++ ++.++.++|++.|...     
T Consensus        74 ~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~-----  147 (393)
T 3kgw_A           74 PLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKP-GEHYTLQEVEEGLAQH-----  147 (393)
T ss_dssp             SEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-----
T ss_pred             CcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEeCCC-CCCCCHHHHHHHHhhC-----
Confidence            64 6553211                      111  123455677899999999874 6789999999999752     


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++++|++.+.+|.||.++|++.+ ++|+++|+++++|+++..+.  .++++..+++|++++|+||+|++ |.|+|+++++
T Consensus       148 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~--~~~~~~~~~~d~~~~s~sK~~~~-~~g~g~~~~~  224 (393)
T 3kgw_A          148 KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGG--VPIYMDQQGIDIMYSSSQKVLNA-PPGISLISFN  224 (393)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTT--SCCCTTTTTCCEEEEESSSTTCC-CSSCEEEEEC
T ss_pred             CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccC--cccchhhcCCCEEEecCcccccC-CCceeEEEEC
Confidence            58999999999999999999855 68999999999999998776  57888888999999999997654 7899999999


Q ss_pred             CCCCcCcCCCCCCC-ceec-cccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          322 KSTVPILVDNTSSG-MVSL-LPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       322 k~~~~~L~p~~~gG-~v~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      ++.++.+.+...+. .... .......|....            ..+  +..+|+|..+++++.                
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~~~~~~a~~----------------  274 (393)
T 3kgw_A          225 DKAKYKVYSRKTKPVSFYTDITYLAKLWGCEG------------ETR--VIHHTTPVTSLYCLR----------------  274 (393)
T ss_dssp             HHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSS------------SCC--CCCCCCCHHHHHHHH----------------
T ss_pred             HHHHHHHhccCCCCCceeecHHHHHHhhhhcc------------ccC--CCCCCCCHHHHHHHH----------------
Confidence            88766554322211 0000 000000010000            011  467899988877765                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              ++++.+.+.+++.+.++.+.+.++|.+.|.++.         ++++.+......+.
T Consensus       275 ------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g---------~~~~~~~~~~~~~~  321 (393)
T 3kgw_A          275 ------------------------ESLALIAEQGLENCWRRHREATAHLHKHLQEMG---------LKFFVKDPEIRLPT  321 (393)
T ss_dssp             ------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CCBSSSSGGGBCSS
T ss_pred             ------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC---------CeeccCChhhcCCe
Confidence                                    578877777899999999999999999999862         34454432122356


Q ss_pred             EEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          480 ALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      ++.|.+++.    ++.. +.++|.++.||.++.|..|.                                    ..+.||
T Consensus       322 ~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~------------------------------------~~~~iR  361 (393)
T 3kgw_A          322 ITTVTVPAG----YNWRDIVSYVLDHFSIEISGGLGPT------------------------------------EERVLR  361 (393)
T ss_dssp             EEEEECCTT----BCHHHHHHHHHHHHCEECBCCCGGG------------------------------------TTTEEE
T ss_pred             EEEEeCCCC----CCHHHHHHHHHHhCCEEEeCCcccC------------------------------------CCCEEE
Confidence            777887531    2333 45556665699999874321                                    125899


Q ss_pred             Eec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          559 ASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +|+ ++.+|.+|++++++.|++++++
T Consensus       362 i~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          362 IGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             EECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHHHh
Confidence            998 7777999999999999998864

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.91  E-value=1.6e-23  Score=218.75  Aligned_cols=323  Identities=12%  Similarity=0.112  Sum_probs=224.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccc---cchHHHHHHHHHHHHHHHcC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLH---GGQESGLESAMKKRIMDFLN  184 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~---g~~~~~~~~~aR~~Ia~~ln  184 (603)
                      ++|++++|..++|+.+++++.+.+...                    +|++.. +.+   +....+.++++|+.+++++|
T Consensus         3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g   62 (360)
T 1w23_A            3 QVFNFNAGPSALPKPALERAQKELLNF--------------------NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQ   62 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSS--------------------TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEeecCCCcCCCHHHHHHHHHHhhhh--------------------ccccccccccCCCCHHHHHHHHHHHHHHHHHhC
Confidence            589999999999999999988765321                    222211 101   22245678899999999999


Q ss_pred             CC-CCcEEEeccC--chHHH-----------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHH-HHhhc
Q 007454          185 IS-ENDYVYDYES--EAVEA-----------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRK-MVVSK  237 (603)
Q Consensus       185 a~-~~e~vf~~es--~sV~~-----------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~-~l~~~  237 (603)
                      ++ +++++|+..+  +++..                       ....++..| +++.++++..++.++.++|++ .|.  
T Consensus        63 ~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~--  139 (360)
T 1w23_A           63 IPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLG-ETHIAASTKANSYQSIPDFSEFQLN--  139 (360)
T ss_dssp             CCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC--
T ss_pred             CCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHHHHHHHhC-CeEEeecccccCcCCccchHhhccC--
Confidence            96 4678776432  11110                       122345679 999999863255677778877 663  


Q ss_pred             CCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                          ++|++|++++.+|.||.++|    .+++++|++|++|+++..+.  .++++..+  |++++|+||+||  |.|+|+
T Consensus       140 ----~~~k~v~~~~~~nptG~~~~----~i~~~~~~~li~D~a~~~~~--~~~~~~~~--di~~~s~sK~~~--~~G~G~  205 (360)
T 1w23_A          140 ----ENDAYLHITSNNTIYGTQYQ----NFPEINHAPLIADMSSDILS--RPLKVNQF--GMIYAGAQKNLG--PSGVTV  205 (360)
T ss_dssp             ----TTEEEEEEESEETTTTEECS----SCCCCCSSCEEEECTTTTTS--SCCCGGGC--SEEEEETTTTTS--CTTCEE
T ss_pred             ----CCCCEEEEeCCCCCcceecc----cccccCCceEEEechhhcCC--CCcCcccC--CEEEEEcccccC--CCCcEE
Confidence                36999999999999999998    23348999999999999887  57777765  999999999999  779999


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      ++++++.++.+.+.. ++.+..    . .+  .+             .+  ...||++..+++++.              
T Consensus       206 ~~~~~~~~~~~~~~~-~~~~~~----~-~~--~~-------------~~--~~~~~~~~~~~~~~~--------------  248 (360)
T 1w23_A          206 VIVKKDLLNTKVEQV-PTMLQY----A-TH--IK-------------SD--SLYNTPPTFSIYMLR--------------  248 (360)
T ss_dssp             EEEEHHHHCSCCTTC-CGGGCH----H-HH--HH-------------TT--TCSSCCCHHHHHHHH--------------
T ss_pred             EEEcHHHHhhcccCC-cchhhh----h-hh--hh-------------cc--CCCCCCCHHHHHHHH--------------
Confidence            999988776665432 211110    0 00  00             01  346888888877765              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                .+++++.+. +++.+.++.+.+++++.+.|.++.     +  ++..+.+.  ..
T Consensus       249 --------------------------~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~--~~~~~~~~--~~  293 (360)
T 1w23_A          249 --------------------------NVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN-----G--FYVGHAEK--GS  293 (360)
T ss_dssp             --------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT-----T--SSEESSCG--GG
T ss_pred             --------------------------HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc-----C--cccccCCc--hh
Confidence                                      588877766 689999999999999999998763     1  11332111  12


Q ss_pred             CCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          477 RGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       477 rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      +++ ++.|.+++.    .....+.+.+.++||.++.|..                                     . .+
T Consensus       294 ~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~-------------------------------------~-~~  331 (360)
T 1w23_A          294 RSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHR-------------------------------------S-VG  331 (360)
T ss_dssp             BCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCT-------------------------------------T-TC
T ss_pred             ccCcEEEEEcCCC----ccHHHHHHHHHHCCeeeecCCC-------------------------------------C-CC
Confidence            444 999988652    1122233334568888754421                                     0 25


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      .||+|++.++|.+||+++++.|++++.
T Consensus       332 ~iRis~~~~~~~~~i~~~~~~l~~~~~  358 (360)
T 1w23_A          332 GCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence            799999999999999999999998865

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.90  E-value=2.3e-22  Score=222.91  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=137.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      ...||||+.+++.+..++..+...                       ..|++.. +..+....++++++|+.+++++|++
T Consensus       108 ~p~~~~~~~~~~~~~~~~~~~l~~-----------------------~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~  164 (515)
T 2jis_A          108 HPRFFNQLFSGLDPHALAGRIITE-----------------------SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS  164 (515)
T ss_dssp             STTEESSSCCCCCHHHHHHHHHHH-----------------------HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCeEEEeeCCCCHHHHHHHHHHH-----------------------HhccCCCchhhchHHHHHHHHHHHHHHHHhCCC
Confidence            457999999999888887754321                       1233221 1122335678899999999999999


Q ss_pred             CCcEEEeccC-chHHHHHHH-----------------------------------HHHcCC---EEEEEeccCCccccCH
Q 007454          187 ENDYVYDYES-EAVEAMIRT-----------------------------------SEKRGA---RVMSAEFSWPRLRINS  227 (603)
Q Consensus       187 ~~e~vf~~es-~sV~~~~~~-----------------------------------a~~~Ga---~V~~~~~~~~~g~i~~  227 (603)
                      +++++|+... +++...+..                                   ++..|.   +|+.++.+ ++++++.
T Consensus       165 ~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-~~~~~d~  243 (515)
T 2jis_A          165 SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD-ERGKMVP  243 (515)
T ss_dssp             SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-TTSCBCH
T ss_pred             CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC-CCCcCCH
Confidence            8888776432 222111111                                   222244   67777776 4788999


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC-----CCCC-CCcEE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG-----LSLV-RPDFL  300 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld-----ls~~-~~Dfl  300 (603)
                      ++|++.|...+....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++.  .+.+     +..+ ++|++
T Consensus       244 ~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~--~~~~~~~~~~~g~~~aD~v  321 (515)
T 2jis_A          244 EDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSV--LLSQTHRHLLDGIQRADSV  321 (515)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGG--GGCTTTGGGGTTGGGCSEE
T ss_pred             HHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHH--HhChhhHhhcCCCccCCEE
Confidence            99999997522112358999999999999999999966 58999999999999988876  3443     4444 89999


Q ss_pred             EEcccccCCCCCCceEEEEEeCC
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ++|+|||||. |.|+|+|++|+.
T Consensus       322 ~~s~hK~l~~-p~g~G~l~~~~~  343 (515)
T 2jis_A          322 AWNPHKLLAA-GLQCSALLLQDT  343 (515)
T ss_dssp             EECTTSTTCC-CSCCEEEEESCC
T ss_pred             EECcccccCC-CCCeeEEEEeCh
Confidence            9999999887 889999999987

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.90  E-value=5.4e-21  Score=207.90  Aligned_cols=308  Identities=11%  Similarity=-0.018  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCc-----EEEeccC-chH---------------------------------HHHHHHHHH
Q 007454          168 ESGLESAMKKRIMDFLNISEND-----YVYDYES-EAV---------------------------------EAMIRTSEK  208 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e-----~vf~~es-~sV---------------------------------~~~~~~a~~  208 (603)
                      ..++++++++.+++++|+++++     ++++... +++                                 ..+...++.
T Consensus        79 ~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~~h~~~~~~~~~  158 (452)
T 2dgk_A           79 SAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY  158 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECCCcHHHHHHHHH
Confidence            4678899999999999998765     5554321 111                                 122333445


Q ss_pred             cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC------CcEEEEeccc
Q 007454          209 RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN------DWHILIDACA  281 (603)
Q Consensus       209 ~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~------g~~vlvDAaq  281 (603)
                      .|++++.+++++.++.++.++|++.|..      +|++|++++.+|.||.+.|++.| ++|+++      |+++|||+++
T Consensus       159 ~G~~v~~v~~~~~~~~~d~~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~  232 (452)
T 2dgk_A          159 WDVELREIPMRPGQLFMDPKRMIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS  232 (452)
T ss_dssp             TTCEEEECCCBTTBCSCCHHHHHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTT
T ss_pred             cCceEEEEecCCCCCeECHHHHHHHHhh------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEccc
Confidence            6888889988743689999999999963      68999999999999999999966 488884      9999999998


Q ss_pred             cCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC-CC-cCc--CCCCCCCceecccccccccccccc
Q 007454          282 LGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS-TV-PIL--VDNTSSGMVSLLPAKKQLWLTDEF  352 (603)
Q Consensus       282 ~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~-~~L--~p~~~gG~v~~~~~~~~~~~~~~~  352 (603)
                      .++.     .-.+++++..++|++++|+|||++. |.|+|++++|+. .+ ..+  .+.+.+|...       .+     
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-----  299 (452)
T 2dgk_A          233 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLA-PLGCGWVIWRDEEALPQELVFNVDYLGGQIG-------TF-----  299 (452)
T ss_dssp             GGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECCTTCCEE-------EC-----
T ss_pred             HHHHHHhhCccchhhcCCCCCcEEEECcccccCC-CCCeEEEEEcCHHHHHHHhccCccccCCCCC-------Cc-----
Confidence            7632     0024566666899999999998755 889999999864 22 222  2333332110       00     


Q ss_pred             CCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc
Q 007454          353 SSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL  432 (603)
Q Consensus       353 ~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i  432 (603)
                                      -..|+.++..++++.                                        .++..+..-
T Consensus       300 ----------------~~~~~r~~~~~~~~~----------------------------------------aal~~lg~~  323 (452)
T 2dgk_A          300 ----------------AINFSRPAGQVIAQY----------------------------------------YEFLRLGRE  323 (452)
T ss_dssp             ----------------CSCCSCBCHHHHHHH----------------------------------------HHHHHHHHH
T ss_pred             ----------------ccCCCChhHHHHHHH----------------------------------------HHHHHHhHH
Confidence                            013344443333332                                        355554445


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC
Q 007454          433 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG  512 (603)
Q Consensus       433 Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G  512 (603)
                      |+..+.++...++++|.+.|.++.        .++++.|.....+.++|+|.+++.....++...+.+.+.++||.++..
T Consensus       324 g~~~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~  395 (452)
T 2dgk_A          324 GYTKVQNASYQVAAYLADEIAKLG--------PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF  395 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTS--------SEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--------CeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeee
Confidence            788889999999999999999763        277776532124678999999764322244334444445679987652


Q ss_pred             cccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhccccc
Q 007454          513 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEKARW  591 (603)
Q Consensus       513 ~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~  591 (603)
                        +.+..                               ..+.+++|+|++.++|.|||++|++.|++.+..---..+.|
T Consensus       396 --~~~~~-------------------------------~~~~~~lRis~~~~~t~e~id~li~~l~~~~~~~~~~~~~~  441 (452)
T 2dgk_A          396 --TLGGE-------------------------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHPKLQ  441 (452)
T ss_dssp             --ECSTT-------------------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred             --eCCcc-------------------------------cCCeEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence              11110                               01235899999999999999999999999876532333455

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.90  E-value=5.9e-21  Score=211.24  Aligned_cols=330  Identities=14%  Similarity=0.019  Sum_probs=227.9

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC-
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS-  186 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~-  186 (603)
                      ...+|....++++++.+.+++...+...                   ..++..   + ....++++++++.+++++|++ 
T Consensus        56 p~~~l~s~~t~~~~~~v~~~l~~~~~~~-------------------~~~~~~---~-p~~~~le~~~~~~la~l~g~~~  112 (502)
T 3hbx_A           56 PRLNLASFVTTWMEPECDKLIMSSINKN-------------------YVDMDE---Y-PVTTELQNRCVNMIAHLFNAPL  112 (502)
T ss_dssp             GGGBTTCCSCCCCCHHHHHHHHHTTTCB-------------------TTCTTT---C-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCceeccccCCCCCHHHHHHHHHHhccC-------------------CCChhc---C-hhHHHHHHHHHHHHHHHhCCCc
Confidence            3455666667888999999887754321                   122211   1 125688889999999999998 


Q ss_pred             -CCcEEE---eccC-c----------------------------------hHHHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          187 -ENDYVY---DYES-E----------------------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       187 -~~e~vf---~~es-~----------------------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                       ++++++   +..+ +                                  +...+...++..|++++.+++++.++.++.
T Consensus       113 ~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~  192 (502)
T 3hbx_A          113 EEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDP  192 (502)
T ss_dssp             CSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCH
T ss_pred             ccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCH
Confidence             555432   2111 1                                  112233445566888999998864589999


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhC------CcEEEEecccc-------CCCCCCCCCCC
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEN------DWHILIDACAL-------GPKDMDSFGLS  293 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~------g~~vlvDAaq~-------~~~~m~~ldls  293 (603)
                      ++|++.|..      +|++|++.+.+|.||.+.|++.|. +|+++      |+++|||+|+.       .+.  .+.++.
T Consensus       193 ~~l~~~i~~------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~--~~~~~~  264 (502)
T 3hbx_A          193 QQAVDMVDE------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE--LEWDFR  264 (502)
T ss_dssp             HHHHHHCCT------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT--CCCSTT
T ss_pred             HHHHHHHhh------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcc--cccccC
Confidence            999999864      689999999999999999999664 88888      99999999986       343  466777


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCC-C-cCc--CCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKST-V-PIL--VDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~-~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                      ..++|++++|+|||++. |.|+|++++++.. + ..+  .+.+.|+...      . +                     -
T Consensus       265 ~~~~D~v~~s~hK~l~~-p~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~------~-~---------------------~  315 (502)
T 3hbx_A          265 LPLVKSINVSGHKYGLV-YAGIGWVIWRNKEDLPEELIFHINYLGADQP------T-F---------------------T  315 (502)
T ss_dssp             STTEEEEEEETTTTTCC-CSSCEEEEESSGGGSCGGGCEEECSSSSCEE------E-C---------------------C
T ss_pred             CCCceEEEECcccccCC-CCCeEEEEEeCHHHhhHHhccCcccccCCCC------C-c---------------------c
Confidence            77999999999999865 8899999998643 2 111  2233332110      0 0                     0


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV  449 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~  449 (603)
                      -.++.+...++++.                                        .++..+...|+..+.++...++++|.
T Consensus       316 ~~~sr~~~~~~a~~----------------------------------------~al~~lg~~g~~~~~~~~~~~a~~l~  355 (502)
T 3hbx_A          316 LNFSKGSSQVIAQY----------------------------------------YQLIRLGHEGYRNVMENCRENMIVLR  355 (502)
T ss_dssp             SCCSCBSHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCchHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12344333444433                                        46665555578888899999999999


Q ss_pred             HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      +.|.++.        .++++.+.   ...++|+|.+.+..+  ++...+.+.+.++||.++..   ..+.          
T Consensus       356 ~~L~~~~--------~~~~~~~~---~~~~~v~f~~~~~~~--~~~~~l~~~L~~~Gi~v~~~---~~p~----------  409 (502)
T 3hbx_A          356 EGLEKTE--------RFNIVSKD---EGVPLVAFSLKDSSC--HTEFEISDMLRRYGWIVPAY---TMPP----------  409 (502)
T ss_dssp             HHHHTTT--------CEEECSCS---SSSSEEEEEESSCSS--CCHHHHHHHHHTTTCBCCEE---ECCT----------
T ss_pred             HHHHhCC--------CEEEEeCC---CCceEEEEEecCCCc--CCHHHHHHHHHhCCcEEeec---cCCc----------
Confidence            9999763        27887652   357899999976332  44444555556789988642   1100          


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                          ...+...+|+|++..+|.|||++|++.|++.++.
T Consensus       410 --------------------~~~~~~~lRisv~~~~t~edid~li~~L~~~l~~  443 (502)
T 3hbx_A          410 --------------------NAQHITVLRVVIREDFSRTLAERLVIDIEKVMRE  443 (502)
T ss_dssp             --------------------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------ccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence                                0112358999999999999999999999988764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.90  E-value=9.5e-22  Score=216.69  Aligned_cols=354  Identities=12%  Similarity=0.056  Sum_probs=218.7

Q ss_pred             hHHHHHHhhccCcC-CCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccccc--chH
Q 007454           92 QIDQIRAKEYYQLS-LSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHG--GQE  168 (603)
Q Consensus        92 ~vd~iR~~efp~L~-~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g--~~~  168 (603)
                      -++++++.-.|... ..+..||||+++++.++.+++++..+..                       |++ .+.++  ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~-----------------------n~~-~~~~~~~~~~  138 (497)
T 2qma_A           83 VIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL-----------------------NQS-MDSWDQASSA  138 (497)
T ss_dssp             HHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH-----------------------CCC-TTCGGGCHHH
T ss_pred             HHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh-----------------------ccc-ccchhhChHH
Confidence            34677765455542 1456899999999999999998764311                       111 11122  234


Q ss_pred             HHHHHHHHHHHHHHcCCCC-CcEEEeccC-chHHHHHHH-----------------------------------------
Q 007454          169 SGLESAMKKRIMDFLNISE-NDYVYDYES-EAVEAMIRT-----------------------------------------  205 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~-~e~vf~~es-~sV~~~~~~-----------------------------------------  205 (603)
                      .++++++|+.+++++|+++ ++++|+... +++...+..                                         
T Consensus       139 ~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~  218 (497)
T 2qma_A          139 TYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKS  218 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHH
Confidence            6777888999999999976 677776432 222111111                                         


Q ss_pred             HHHcCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc
Q 007454          206 SEKRGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       206 a~~~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq  281 (603)
                      ++..|.   +|+.++++ .+++++.++|++.|..++....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++
T Consensus       219 ~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~  297 (497)
T 2qma_A          219 ASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAY  297 (497)
T ss_dssp             HHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETT
T ss_pred             HHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhh
Confidence            112233   67777777 478899999999997521111124489999999999999999966 5899999999999999


Q ss_pred             cCCCCCCCCC----CCCC-CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCC
Q 007454          282 LGPKDMDSFG----LSLV-RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSC  355 (603)
Q Consensus       282 ~~~~~m~~ld----ls~~-~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~  355 (603)
                      .++.  .+.+    +..+ ++|++++|+||||+. |.|+|+|++|+...  +++.... +...   ...... +      
T Consensus       298 ~~~~--~~~~~~~~~~gi~~~D~i~~s~hK~l~~-p~~~G~l~~~~~~~--~~~~~~~~~yl~---~~~~~~-~------  362 (497)
T 2qma_A          298 GGAL--ILSSHKSRLKGVERAHSISVDFHKLFYQ-TISCGALLVNDKSN--FKFLLHHADYLN---REHDEL-P------  362 (497)
T ss_dssp             GGGG--GGSTTGGGGTTGGGCSEEEEETTTTTCC-CSSCEEEEESCGGG--GGGGCC-----------------------
T ss_pred             hHHH--HhCcchHhhcCcccCCEEEEcchhccCC-CcceEEEEEeCHHH--HHHhcCCchhcC---CccccC-C------
Confidence            8876  3444    3334 789999999998876 88999999987642  2221111 0000   000000 0      


Q ss_pred             CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454          356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT  435 (603)
Q Consensus       356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~  435 (603)
                      ++-     ...  . .++-.+.++ .+                                        ..+++.+...|+.
T Consensus       363 ~~~-----~~~--~-~~~r~~~al-~~----------------------------------------~~~l~~lg~~g~~  393 (497)
T 2qma_A          363 NLV-----DKS--I-ATTKRFDAL-KV----------------------------------------FMTMQNVGPKALG  393 (497)
T ss_dssp             ---------------CCSCCCTHH-HH----------------------------------------HHHHHHTCHHHHH
T ss_pred             Ccc-----ccC--C-CCCCchhHH-HH----------------------------------------HHHHHHhCHHHHH
Confidence            000     000  0 011111111 11                                        1345544334677


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC--ccCHHHHHHHHhcCCcEEeeCc
Q 007454          436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIEPVLVQKLADRENISLSYGS  513 (603)
Q Consensus       436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~--~v~~~~V~~Lad~~gI~lr~G~  513 (603)
                      .+.++...++++|.+.|.+++        .++++++.    +.++|.|.+.+....  .+...+..++. +.|+.     
T Consensus       394 ~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~----~~~~v~f~~~~~~~~~~~l~~~l~~~l~-~~G~~-----  455 (497)
T 2qma_A          394 DMYDHLLAQTLEVADMIRTND--------QFELLAEP----SLSTVLFRATHETADLDELNKALRLEAL-TRGIA-----  455 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCT--------TEEECSCC----SSSEEEEEECCSSSCHHHHHHHHHHHHH-HHTSC-----
T ss_pred             HHHHHHHHHHHHHHHHHhhCC--------CeEEEcCC----CceEEEEEEcCCccCHHHHHHHHHHHHH-hCCCE-----
Confidence            888899999999999999753        27887753    568999998753211  01111222222 23433     


Q ss_pred             ccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          514 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       514 ~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                       |..+.                              ...+.+++|+|+ ++++|.+||+++++.|++++++
T Consensus       456 -~~~~~------------------------------~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          456 -VLGET------------------------------IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             -BCEEE------------------------------EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -EEEee------------------------------EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence             32110                              001125899998 9999999999999999988753

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=9.4e-21  Score=199.01  Aligned_cols=314  Identities=14%  Similarity=-0.032  Sum_probs=216.7

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      ..||.++.+ +.++.+++++.+.+...                   ..++..   + ....+.++++|+.+++++|++++
T Consensus        32 ~~~~~~~~~-~~~~~v~~a~~~~~~~~-------------------~~~~~~---~-~~~~~~~~~l~~~la~~~~~~~~   87 (397)
T 3f9t_A           32 GNIFGSMCS-NVLPITRKIVDIFLETN-------------------LGDPGL---F-KGTKLLEEKAVALLGSLLNNKDA   87 (397)
T ss_dssp             TCBCSCSCC-CCCTHHHHHHHHHTTCC-------------------TTSGGG---B-HHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             CCeEEEecC-CCcHHHHHHHHHHHhhc-------------------CCCccc---C-hhHHHHHHHHHHHHHHHhCCCCC
Confidence            478998855 45667888877654321                   122221   1 12457888999999999999998


Q ss_pred             cEEEeccC-chHHH----------------------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454          189 DYVYDYES-EAVEA----------------------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKM  233 (603)
Q Consensus       189 e~vf~~es-~sV~~----------------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~  233 (603)
                      +++++... +++..                                  +...++..|++++.++++ +++.++.++|++.
T Consensus        88 ~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~  166 (397)
T 3f9t_A           88 YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIK-EDYTIDEKFVKDA  166 (397)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBC-TTSSBCHHHHHHH
T ss_pred             CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeC-CCCcCCHHHHHHH
Confidence            88776432 12221                                  222334457788888887 4788999999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---C---------CCCCCCCCCCCcEE
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---D---------MDSFGLSLVRPDFL  300 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~---------m~~ldls~~~~Dfl  300 (603)
                      |...     +++++++...+|.||.+.|++.+ ++|+++|+++++|.++.++.   .         ..++++.. ++|++
T Consensus       167 i~~~-----~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  240 (397)
T 3f9t_A          167 VEDY-----DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSI  240 (397)
T ss_dssp             HHHS-----CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEE
T ss_pred             Hhhc-----CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeE
Confidence            9741     57889999999999999999966 58999999999999986432   0         01566666 89999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCC-cCcC--CCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTV-PILV--DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~-~~L~--p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++|+||+++. |.++|++++++..+ +.+.  .++..+..       +                    .  ...||.+..
T Consensus       241 ~~s~~K~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~--------------------~--~~~~~~~~~  290 (397)
T 3f9t_A          241 TIDPHKMGHC-PIPSGGILFKDIGYKRYLDVDAPYLTETR-------Q--------------------A--TILGTRVGF  290 (397)
T ss_dssp             ECCTTTTTCC-CSSCEEEEESSGGGGGGTCEECTTSSSSE-------E--------------------C--SSCSSCCSH
T ss_pred             EEccccccCC-CCCceEEEEeCHHHHHhhccCCccccCCC-------c--------------------c--ccccccccc
Confidence            9999999864 78999999987643 2221  11111100       0                    0  123555544


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++.                                        ++++.+...+++.+.++.+.++++|.+.|.++. 
T Consensus       291 ~~~~~~----------------------------------------a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-  329 (397)
T 3f9t_A          291 GGACTY----------------------------------------AVLRYLGREGQRKIVNECMENTLYLYKKLKENN-  329 (397)
T ss_dssp             HHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             hHHHHH----------------------------------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            444433                                        456655556788888999999999999999862 


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                              +.++++    ..++++.|.+.+       ...+.+.+.++||.++.|..                       
T Consensus       330 --------~~~~~~----~~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~~~~-----------------------  367 (397)
T 3f9t_A          330 --------FKPVIE----PILNIVAIEDED-------YKEVCKKLRDRGIYVSVCNC-----------------------  367 (397)
T ss_dssp             --------CCBSSC----CSSSEEEEECTT-------HHHHHHHHHHTTCBCEECSS-----------------------
T ss_pred             --------CEEEcC----CCccEEEEEeCC-------HHHHHHHHHhCCeEEeccCC-----------------------
Confidence                    233333    357888888764       23344444556998875511                       


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                      .+.||+|++.++|.|||+++++.|++++.
T Consensus       368 ----------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          368 ----------------VKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             ----------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             ----------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence                            15899999999999999999999998764

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.89  E-value=3.7e-22  Score=212.79  Aligned_cols=321  Identities=11%  Similarity=0.031  Sum_probs=217.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .+.+|++++|.+++|+.+++++.++...                      .....+ ++....+.++++|+.+++++|++
T Consensus        38 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~~~la~~~g~~   94 (398)
T 2fyf_A           38 KPRDGRFGSGPSKVRLEQLQTLTTTAAA----------------------LFGTSH-RQAPVKNLVGRVRSGLAELFSLP   94 (398)
T ss_dssp             SCSSCBCCSSSCCCCHHHHHGGGTTTTT----------------------TTTSCT-TSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCccccCCCCCCCHHHHHHHhhcCCC----------------------ccCcCc-CCHHHHHHHHHHHHHHHHHhCCC
Confidence            4568999999999999999997652100                      000001 11223567889999999999997


Q ss_pred             C-CcEEE-eccC-chHHHHHH---------------------HHHHc--CCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 E-NDYVY-DYES-EAVEAMIR---------------------TSEKR--GARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~-~e~vf-~~es-~sV~~~~~---------------------~a~~~--Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      + ++++| +... +++..++.                     .+...  |+++..+++++  +.+...    .+      
T Consensus        95 ~~~~i~~~t~g~t~al~~~~~~l~~~gv~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--g~~~~~----~i------  162 (398)
T 2fyf_A           95 DGYEVILGNGGATAFWDAAAFGLIDKRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDP--GSAPEP----QT------  162 (398)
T ss_dssp             TTCEEEEEETCHHHHHHHHHHHTCSSCEEEEECSHHHHHHHHHHHHCTTSCCCEEEECCT--TCCCCC----CC------
T ss_pred             CCceEEEeCCchhHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHhCCCCceEEEecCC--CCCCCc----cc------
Confidence            4 68888 5432 12222111                     23334  66666666652  222111    01      


Q ss_pred             CCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      +++|++|++++.+|.||.++|++.+...  +|++|++|+++..+.  .++++.  ++|++++|+||+||. |.|+|++++
T Consensus       163 ~~~~~~v~~~~~~nptG~~~~~~~i~~~--~~~~vivD~a~~~~~--~~~~~~--~~di~~~s~sK~~~~-~gg~g~l~~  235 (398)
T 2fyf_A          163 DPSVDVIAWAHNETSTGVAVAVRRPEGS--DDALVVIDATSGAGG--LPVDIA--ETDAYYFAPQKNFAS-DGGLWLAIM  235 (398)
T ss_dssp             CTTCSEEEEESEETTTTEECCCCCCTTC--C-CEEEEECTTTTTT--SCCCGG--GCSEEEECTTSTTCS-CSSEEEEEE
T ss_pred             cCCCCEEEEeCcCCCcceecchHHhhhh--cCCeEEEEeccccCC--cccCcc--cCcEEEEecCcccCC-CCceEEEEE
Confidence            2468999999999999999999866433  899999999999887  577775  489999999999994 447999999


Q ss_pred             eCCCCcCcC---------CCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcc
Q 007454          321 KKSTVPILV---------DNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKL  390 (603)
Q Consensus       321 kk~~~~~L~---------p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~  390 (603)
                      +++.++.++         +++.. |...      ..+          .      ..  ...+|+|+.+++++.       
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~----------~------~~--~~~~t~~~~~~~a~~-------  284 (398)
T 2fyf_A          236 SPAALSRIEAIAATGRWVPDFLSLPIAV------ENS----------L------KN--QTYNTPAIATLALLA-------  284 (398)
T ss_dssp             CHHHHHHHHHHHHTTCCCCGGGCHHHHH------HHH----------T------TT--CCSSCCCHHHHHHHH-------
T ss_pred             CHHHHHHhhcccccCCCCCcEEehHHHh------hhc----------c------cC--CCCCCCCHHHHHHHH-------
Confidence            988765552         12222 1100      000          0      00  235788888877765       


Q ss_pred             ccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454          391 EQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG-LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY  469 (603)
Q Consensus       391 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG-l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy  469 (603)
                                                       ++++.+.+.| ++.+.++.+.++++|.+.|.+++        .++++
T Consensus       285 ---------------------------------~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~~  323 (398)
T 2fyf_A          285 ---------------------------------EQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERP--------YTTPF  323 (398)
T ss_dssp             ---------------------------------HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHST--------TEEES
T ss_pred             ---------------------------------HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcC--------Cceec
Confidence                                             5888777667 99999999999999999999863        27787


Q ss_pred             CCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454          470 GPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD  548 (603)
Q Consensus       470 gp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  548 (603)
                      .+.. ..+++ ++.|.+++  +  ++...+.+.+.++||.++.|..                                  
T Consensus       324 ~~~~-~~~~~~~~~~~~~~--~--~~~~~l~~~L~~~gI~v~~g~~----------------------------------  364 (398)
T 2fyf_A          324 VTDP-GLRSQVVGTIDFVD--D--VDAGTVAKILRANGIVDTEPYR----------------------------------  364 (398)
T ss_dssp             CCSG-GGBCSSEEEEEECT--T--SCHHHHHHHHHHTTCBCCSCCT----------------------------------
T ss_pred             cCCh-hhcCCcEEEEECCC--C--CCHHHHHHHHHHCCcEEecCcc----------------------------------
Confidence            5211 12456 99999963  1  3344444444556999886510                                  


Q ss_pred             CCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          549 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       549 ~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                        ..+.+.||+|++.++|.|||+++++.|++++.
T Consensus       365 --~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~  396 (398)
T 2fyf_A          365 --KLGRNQLRVAMFPAVEPDDVSALTECVDWVVE  396 (398)
T ss_dssp             --TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             --cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence              01125899999999999999999999998875

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.89  E-value=2e-22  Score=221.88  Aligned_cols=337  Identities=15%  Similarity=0.085  Sum_probs=222.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccc-hHHHHHHHHHHHHHHHcCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGG-QESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~-~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      .+.| .++.++.|+.+++++.+.+.+.                 |..++|.+.+..|. ...++++.+|+++++++|+++
T Consensus        46 ~i~L-~a~e~~~~~~V~eA~~~~l~~~-----------------~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~  107 (483)
T 1rv3_A           46 GLEL-IASENFASRAVLEALGSCLNNK-----------------YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDP  107 (483)
T ss_dssp             SEEC-CTTCCCCCHHHHHHHTSGGGTC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred             CeEE-EcCCCCCCHHHHHHHHHHHhcc-----------------CcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCc
Confidence            4555 4677889999999987755321                 11256665443332 346788899999999999987


Q ss_pred             Cc----EEEeccCchHHHHHHHHHHcCCEEEE-----------------------------Eec--cCCccccCHHHHHH
Q 007454          188 ND----YVYDYESEAVEAMIRTSEKRGARVMS-----------------------------AEF--SWPRLRINSEKLRK  232 (603)
Q Consensus       188 ~e----~vf~~es~sV~~~~~~a~~~Ga~V~~-----------------------------~~~--~~~~g~i~~~~L~~  232 (603)
                      ++    +++...+.+...+....-+.|.+|..                             +++  +..++.+|.++|++
T Consensus       108 ~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~  187 (483)
T 1rv3_A          108 QCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEE  187 (483)
T ss_dssp             TTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHH
T ss_pred             ccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHH
Confidence            65    44443332222222333334444433                             222  32357799999999


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC---CCcEEEEcccccC
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV---RPDFLICSFYQIF  308 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~---~~Dflv~S~hK~f  308 (603)
                      ++..     .+|+|+++ +.+|.+ .++|++.| ++|+++|+++++|+++..|.  ...++...   ++|++++|+||+|
T Consensus       188 ~i~~-----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~--~~~~~~~~p~~~~div~~s~~K~l  258 (483)
T 1rv3_A          188 NARL-----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGL--VVAGVVPSPFEHCHVVTTTTHKTL  258 (483)
T ss_dssp             HHHH-----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHH--HHHTSSCCGGGTCSEEEEESSGGG
T ss_pred             HHhh-----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcc--cccCCCCCCCCCCcEEEecCcccC
Confidence            9973     15889999 889988 99999966 58999999999999988654  33444434   7899999999987


Q ss_pred             CCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454          309 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG  388 (603)
Q Consensus       309 G~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~  388 (603)
                      ++ |.| |+++++++... ++  ..||..... .........      .     .+    ...||++...+++++     
T Consensus       259 ~G-prg-G~i~~~~~~~~-~~--~~~g~~~~y-~~~~~~~~~------~-----~~----~~~g~~~~~~iaal~-----  312 (483)
T 1rv3_A          259 RG-CRA-GMIFYRRGVRS-VD--PKTGKEILY-NLESLINSA------V-----FP----GLQGGPHNHAIAGVA-----  312 (483)
T ss_dssp             CC-CSC-EEEEEECSBCC----------CCBC-CHHHHHHHH------H-----TT----TTCCSCCHHHHHHHH-----
T ss_pred             CC-CCc-eEEEEcchhhh-hc--cccCcchhh-HHHHHhhhh------c-----CC----cccCCccHHHHHHHH-----
Confidence            55 889 99999988653 43  223321100 000000000      0     01    137889988887776     


Q ss_pred             ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454          389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI  468 (603)
Q Consensus       389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I  468 (603)
                                                         .|++.+...+++.+.++.+.++++|.+.|.++      |   +++
T Consensus       313 -----------------------------------~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~  348 (483)
T 1rv3_A          313 -----------------------------------VALKQAMTPEFKEYQRQVVANCRALSAALVEL------G---YKI  348 (483)
T ss_dssp             -----------------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEE
T ss_pred             -----------------------------------HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc------C---CEe
Confidence                                               57776654567888999999999999999875      2   566


Q ss_pred             eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe----eCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS----YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       469 ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr----~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      +++..   ....+.+.+... |  ++...+.+++++.||.++    .|..|.                            
T Consensus       349 ~~~~~---~~~~~~v~~~~~-g--~~~~~~~~~L~~~gI~v~~~~~pg~~~~----------------------------  394 (483)
T 1rv3_A          349 VTGGS---DNHLILVDLRSK-G--TDGGRAEKVLEACSIACNKNTCPGDKSA----------------------------  394 (483)
T ss_dssp             GGGSC---SSSEEEEEGGGG-T--CCHHHHHHHHHHTTEECEEECCSSCSCT----------------------------
T ss_pred             ccCCC---CCceEEEeccCC-C--CCHHHHHHHHHhCCcEEecCCCCCCCcC----------------------------
Confidence            65531   123344444321 1  344557777788999998    454331                            


Q ss_pred             ccccCCCCCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454          545 NRKDKANLGITVVTASLGYLAN----FEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt----~eDVd~l~~~l~~~l~~  583 (603)
                             .+.+.||+|++.+||    .+|+++++++|+++++.
T Consensus       395 -------~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          395 -------LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             -------TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence                   112689999999999    99999999999999875

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.89  E-value=8e-22  Score=213.60  Aligned_cols=291  Identities=15%  Similarity=0.085  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEe--------------------------ccCchHH-HHHHHHHHcCCEEEEEeccC
Q 007454          168 ESGLESAMKKRIMDFLNISENDYVYD--------------------------YESEAVE-AMIRTSEKRGARVMSAEFSW  220 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~vf~--------------------------~es~sV~-~~~~~a~~~Ga~V~~~~~~~  220 (603)
                      ..+.++++|+.+++++|++++++++.                          .+|.+.. .+...++..|++++.++.+ 
T Consensus       106 ~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~-  184 (438)
T 1wyu_A          106 VLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLE-  184 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCB-
T ss_pred             HHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCc-
Confidence            45788999999999999987765432                          2233332 2334456689999988863 


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc-ccCCCCCCCCCCCCCCCc
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC-ALGPKDMDSFGLSLVRPD  298 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa-q~~~~~m~~ldls~~~~D  298 (603)
                       ++.++.++    |.      ++|++|++.+. |.||.+.|++.| ++|+++|++|++|+. +..+.  ...+ ..+++|
T Consensus       185 -~~~~d~~~----i~------~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~--~~~~-~~~g~D  249 (438)
T 1wyu_A          185 -GGRTPLPE----VG------EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV--LKPP-GAYGAD  249 (438)
T ss_dssp             -TTBCCCCC----CC------TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT--BCCH-HHHTCS
T ss_pred             -CCccCHHH----hC------CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccC--cCCC-ccCCCC
Confidence             45666544    33      36999999997 999999999865 589999999997764 43443  2333 457899


Q ss_pred             EEEEcccc-----cCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          299 FLICSFYQ-----IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       299 flv~S~hK-----~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      ++++|+||     |+|+ | |+|+|+++++..+.+.+...|+++... .... +..      .+... ..+.+  ++.||
T Consensus       250 ~~~~s~kk~~~~~~~~G-p-~~G~l~~~~~~~~~l~~~~~g~~~~~~-~~~~-~~~------~l~~~-~~~~r--~~~~t  316 (438)
T 1wyu_A          250 IAVGDGQSLGLPMGFGG-P-HFGFLATKKAFVRQLPGRLVSETVDVE-GRRG-FIL------TLQAR-EQYIR--RAKAK  316 (438)
T ss_dssp             EEEEECTTTTCCCGGGC-S-CCEEEEECGGGGGGCCSCCEEEEEBTT-SCEE-EEE------CCGGG-SHHHH--GGGSS
T ss_pred             EEEECCcccCCCccCCC-C-CeeEEEEcHHHHHhCCCceeccccccC-CCcc-eee------ecccc-ccccc--hhccc
Confidence            99999888     5655 7 999999999887766544434332210 0000 100      00000 00112  46789


Q ss_pred             CChh---hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHH--HHHHHhcCHHHHHHHHHHHHHHH
Q 007454          374 NTFS---GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRG--LDQVDSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       374 ~n~~---gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--ld~~~~iGl~~i~~r~~~L~~~L  448 (603)
                      .|+.   .++++.                                        ++  +..+...|++++.++.+.++++|
T Consensus       317 ~~~~~~~~~~a~~----------------------------------------aa~~l~~~~~~g~~~~~~~~~~~~~~l  356 (438)
T 1wyu_A          317 SNITTNAQLTALM----------------------------------------GAMYLAALGPEGLREVALKSVEMAHKL  356 (438)
T ss_dssp             CCCCSCCHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHH----------------------------------------HHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9883   333332                                        23  55555567899999999999999


Q ss_pred             HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEE--eeCcccCccCCchhhhh
Q 007454          449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL--SYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~l--r~G~~C~~~~~~~~~~~  526 (603)
                      .++|.+++        .++++++.   ..-.++.|.+.      .+...+.+.+.++||.+  +.|.+|           
T Consensus       357 ~~~L~~~~--------g~~~~~~~---~~~~~~~~~~~------~~~~~~~~~L~~~gi~v~~~~~~~~-----------  408 (438)
T 1wyu_A          357 HALLLEVP--------GVRPFTPK---PFFNEFALALP------KDPEAVRRALAERGFHGATPVPREY-----------  408 (438)
T ss_dssp             HHHHTTST--------TCEECSCS---SBCSEEEEECS------SCHHHHHHHHHHTTCCCCEECCTTS-----------
T ss_pred             HHHHhcCC--------CeEECCCC---CeEEEEEEeCC------CCHHHHHHHHHHCCceecccccccc-----------
Confidence            99998763        26777753   23445666542      23344444444579988  445333           


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                                +.+.||+|++.++|.+||+++++.|++++
T Consensus       409 --------------------------~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          409 --------------------------GENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             --------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             --------------------------CCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence                                      12589999999999999999999998764

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.88  E-value=1.2e-20  Score=208.31  Aligned_cols=341  Identities=11%  Similarity=0.037  Sum_probs=209.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      ...||+|..+++.+..++..+....                       .|++.. +..+....++++++++.+++++|++
T Consensus        92 ~p~~~~~~~~~~~~~~~~~~~l~~~-----------------------~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~  148 (504)
T 2okj_A           92 HPRFFNQLSTGLDIIGLAGEWLTST-----------------------ANTNMFTYEIAPVFVLMEQITLKKMREIVGWS  148 (504)
T ss_dssp             CTTEESSSSCCCCHHHHHHHHHHHH-----------------------HCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEccCCCCHHHHHHHHHHHh-----------------------hccCCCchhhChHHHHHHHHHHHHHHHHhCCC
Confidence            4579999988887766654432210                       111111 1112234567788889999999998


Q ss_pred             --CCcEEEeccC-chHHHHHH-----------------------------------HHHHcCC---EEEEEeccCCcccc
Q 007454          187 --ENDYVYDYES-EAVEAMIR-----------------------------------TSEKRGA---RVMSAEFSWPRLRI  225 (603)
Q Consensus       187 --~~e~vf~~es-~sV~~~~~-----------------------------------~a~~~Ga---~V~~~~~~~~~g~i  225 (603)
                        +++++|+... +++...+.                                   .++..|.   +|+.++.+ +++++
T Consensus       149 ~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~-~~~~~  227 (504)
T 2okj_A          149 SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN-ERGKI  227 (504)
T ss_dssp             SSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC-TTSCB
T ss_pred             CCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC-CCCCC
Confidence              6778776431 22221111                                   1222233   67777776 47889


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC---CCCCCCC-CCCcEE
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM---DSFGLSL-VRPDFL  300 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m---~~ldls~-~~~Dfl  300 (603)
                      +.++|++.|...+....++.+|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++.-.   ....+.. .++|++
T Consensus       228 d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i  307 (504)
T 2okj_A          228 IPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSV  307 (504)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEE
T ss_pred             CHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEE
Confidence            9999999997522222358999999999999999999966 5899999999999998877510   0023442 379999


Q ss_pred             EEcccccCCCCCCceEEEEEeCC-CCcC---cCCCCC-CCcee--ccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKS-TVPI---LVDNTS-SGMVS--LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~-~~~~---L~p~~~-gG~v~--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      ++++|||||. |.|+|+|++|+. .+..   ..+.+. ++...  ...... .|        .++.    .+    +.++
T Consensus       308 ~~~~hK~~~~-p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~--------~~~~----~r----r~~~  369 (504)
T 2okj_A          308 TWNPHKMMGV-LLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTG-DK--------AIQC----GR----HVDI  369 (504)
T ss_dssp             EECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCG-GG--------SSCS----SC----BCCH
T ss_pred             EECchhhcCC-CcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcc-cC--------CCCC----CC----CccH
Confidence            9999999987 889999999985 4321   223333 32210  000000 00        0110    01    1122


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .+.+                                              .++..+...|+..+.++...++++|.+.|.
T Consensus       370 l~~~----------------------------------------------a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~  403 (504)
T 2okj_A          370 FKFW----------------------------------------------LMWKAKGTVGFENQINKCLELAEYLYAKIK  403 (504)
T ss_dssp             HHHH----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHH----------------------------------------------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111                                              233333344788888999999999999998


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--C----C-------ccCHHHHHHHHhcCC-cEEeeCcccCccC
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--R----E-------KIEPVLVQKLADREN-ISLSYGSLHHIWF  519 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g----~-------~v~~~~V~~Lad~~g-I~lr~G~~C~~~~  519 (603)
                      +++        .++++++.  ....++|+|.+.+..  +    .       .....+.++|.+ +| |.++.+.      
T Consensus       404 ~~~--------~~~~~~~~--~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~G~~~~~~~~------  466 (504)
T 2okj_A          404 NRE--------EFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME-SGTTMVGYQP------  466 (504)
T ss_dssp             TCT--------TEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHH-HTSCEEEEEE------
T ss_pred             cCC--------CEEEEecC--CCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHh-CCcEEEEeeE------
Confidence            753        38888742  135788999874321  0    0       001223333433 33 2322110      


Q ss_pred             CchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454          520 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       520 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             .      .+ ..+++|+|++ ++||.+||+++++.|++++++
T Consensus       467 -----------------------~------~~-~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~  501 (504)
T 2okj_A          467 -----------------------Q------GD-KANFFRMVISNPAATQSDIDFLIEEIERLGQD  501 (504)
T ss_dssp             -----------------------E------TT-EEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             -----------------------E------CC-ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                                   0      01 1258999997 999999999999999988754

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.87  E-value=2.6e-20  Score=200.32  Aligned_cols=303  Identities=9%  Similarity=0.031  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchHHH-HHHHHHHcCCEEEEEeccCCc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAVEA-MIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV~~-~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                      ....++.|++|++++|++  +++|..                         ++.++.. +...++..|+++..++.+   
T Consensus        55 ~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---  129 (412)
T 2cb1_A           55 DPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE---  129 (412)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS---
T ss_pred             ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence            356789999999999985  555432                         1222211 111234467777776642   


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                          .++|++.|..      ++++|++...+|+||.++|++.| ++|+++|+++++|+++..+.  ...+.-..++|+++
T Consensus       130 ----~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~~di~~  197 (412)
T 2cb1_A          130 ----PEAVREALSA------KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAG--ALCRPLAWGAHVVV  197 (412)
T ss_dssp             ----HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTT--TSCCGGGGTCSEEE
T ss_pred             ----HHHHHHHhcc------CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--ccCCccccCCeEEE
Confidence                7888888853      68999999999999999999966 58999999999999998872  12222246799999


Q ss_pred             EcccccCCCCCCc-eEEEEEeCCCC-----cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          302 CSFYQIFGENPSG-FGCLFVKKSTV-----PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       302 ~S~hK~fG~~P~G-~G~L~vkk~~~-----~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      +|+||+||+ |.| +|++++.++..     ..+.++...|+.....-..+.+                ...  ++.++.+
T Consensus       198 ~S~~K~~~~-~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------------~~~--~r~~~~~  258 (412)
T 2cb1_A          198 ESLTKWASG-HGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCF----------------PER--VRTLGLS  258 (412)
T ss_dssp             EETTTTTTC-SSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHH----------------HHH--HHHHHTT
T ss_pred             ECCcccccC-CCCcEEEEEEeccccccccccccccccccccchhhccchHHH----------------HHH--HHHHHHH
Confidence            999999976 766 89999887432     1222222222211000000000                000  2233322


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ..|+ ++.                                    ... .++....--.+....++...+.++|.+.|.++
T Consensus       259 ~~g~-~~~------------------------------------~~~-a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~  300 (412)
T 2cb1_A          259 LCGM-ALS------------------------------------PFN-AYLLFQGLETVALRVARMSETARFLAERLQGH  300 (412)
T ss_dssp             TTCC-CCC------------------------------------HHH-HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hcCC-CCC------------------------------------hHH-hHHHHcCCchHHHHHHHHHHHHHHHHHHHHcC
Confidence            2221 110                                    000 11111110013334445567889999999875


Q ss_pred             CCCCCCCCceEEEeCCCCC------------CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC---------cc
Q 007454          456 QHPNTEGNALVKIYGPKIR------------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG---------SL  514 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~------------~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G---------~~  514 (603)
                      +     ++  ..+++|...            ..++++++|++ + +     .+.+.+++++.||.+ +|         ++
T Consensus       301 ~-----~v--~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~-----~~~~~~~l~~~~i~~-~~s~g~~~sl~~~  365 (412)
T 2cb1_A          301 P-----KV--KALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-D-----LERASRFLGAIRLLK-AANLGDARTLLVH  365 (412)
T ss_dssp             T-----TC--SEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-S-----HHHHHHHHHHCSSEE-CSCCSCSSCEEEC
T ss_pred             C-----Ce--eEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-C-----HHHHHHHHHhCCeee-ecccCCCcceeec
Confidence            3     22  236666421            14689999999 5 3     456788888999999 88         47


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                      |+...+...   ....+++++                ...+.||+|+|.+++.+||++|.++|++
T Consensus       366 ~~~~~~~~~---~~~~~~~~g----------------~~~~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          366 PWTTTHSRL---KEEARLQAG----------------VTPGLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             TTTTTTTTS---CHHHHHHTT----------------CCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             CcccccccC---CHHHHHhcC----------------CCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence            766543311   012333332                2247999999999999999999999864

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.85  E-value=2e-19  Score=197.67  Aligned_cols=265  Identities=11%  Similarity=-0.006  Sum_probs=171.7

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      +.++..|++++.++.++ ++ ++.++|+++|..+++....+.+|++++.++.||.+.|++.| ++|+++|+++|+|+++.
T Consensus       197 ~~~~~~g~~~~~v~~d~-~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~  274 (475)
T 3k40_A          197 RAGLLGGVKLRSVQSEN-HR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYA  274 (475)
T ss_dssp             HHHHHHTCEEEEECCBT-TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTG
T ss_pred             HHHHHcCCceEEEECCC-CC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhH
Confidence            34445689999999984 78 99999999998633222347889999999999999999966 58999999999999987


Q ss_pred             CCCCCC-CC--CCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCC--cCc--CCCCCCCceeccccccccccccccCC
Q 007454          283 GPKDMD-SF--GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV--PIL--VDNTSSGMVSLLPAKKQLWLTDEFSS  354 (603)
Q Consensus       283 ~~~~m~-~l--dls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~--~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~  354 (603)
                      ++.-.. ..  .+.. .++|++++++|||++. |.|.|+|++|+...  ..+  .+.+..+...     ...+...    
T Consensus       275 ~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~-----~~~~~~~----  344 (475)
T 3k40_A          275 GSAFICPEYRHLMKGIESADSFNFNPHKWMLV-NFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQ-----GSAPDYR----  344 (475)
T ss_dssp             GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESSGGGC--------------------------------
T ss_pred             HHHHhCHhhHHHhcCcccCCEEEECchhccCC-CCceEEEEEeCHHHHHHHhcCCccccCCCcC-----CCCCCcc----
Confidence            653100 01  0111 2479999999998876 99999999997642  111  1222211000     0000000    


Q ss_pred             CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454          355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL  434 (603)
Q Consensus       355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl  434 (603)
                               +..  ++.|.. + .++++.                                        .+++.+...|+
T Consensus       345 ---------~~~--~~~sr~-~-~~l~l~----------------------------------------~al~~~g~~g~  371 (475)
T 3k40_A          345 ---------HWQ--IPLGRR-F-RALKLW----------------------------------------FVLRLYGVENL  371 (475)
T ss_dssp             ---------------CCCGG-G-THHHHH----------------------------------------HHHHHHHHHHH
T ss_pred             ---------ccc--ccCCCc-c-cHHHHH----------------------------------------HHHHHHhHHHH
Confidence                     000  122322 2 222222                                        46666655688


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454          435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      +.+.++...+++++.+.|.+++        .+++++|.    ..++|+|++.+.+  .....+.++|.++..+.+.    
T Consensus       372 ~~~~~~~~~~a~~l~~~L~~~~--------g~~l~~~~----~~~iv~f~~~~~~--~~~~~l~~~L~~~g~~~~~----  433 (475)
T 3k40_A          372 QAHIRRHCNFAKQFGDLCVADS--------RFELAAEI----NMGLVCFRLKGSN--ERNEALLKRINGRGHIHLV----  433 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHST--------TEEESSCC----BTTEEEEEESSCH--HHHHHHHHHHHHHTSCBCE----
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--------CEEEecCC----ceEEEEEEeCCch--HHHHHHHHHHHhCCcEEEE----
Confidence            8999999999999999999863        28888763    5789999997532  1223445555544333322    


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                        +..                               ..+...+|+++. +.+|.+||+++++.|++++++-
T Consensus       434 --~~~-------------------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~  471 (475)
T 3k40_A          434 --PAK-------------------------------IKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEM  471 (475)
T ss_dssp             --EEE-------------------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --eeE-------------------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence              110                               012358999976 6679999999999999987653

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.84  E-value=4.4e-20  Score=195.84  Aligned_cols=328  Identities=12%  Similarity=0.073  Sum_probs=215.1

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~  187 (603)
                      ..++|+++.+++++.+++++.+.+...                 +..+++.+.+..|.. ..++.+.+|++|++++|+++
T Consensus        24 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~   86 (405)
T 2vi8_A           24 AKIELIASENFVSRAVMEAQGSVLTNK-----------------YAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEH   86 (405)
T ss_dssp             HSEECCTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             cceeeccCcccCCHHHHHHHHHHhhcc-----------------cccCCCCccccccchHHHHHHHHHHHHHHHHhCCCc
Confidence            458888999999999999987654210                 012444443322322 34566679999999999985


Q ss_pred             CcEEEeccCchHHHHHHHHHHcC--------------------------CEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          188 NDYVYDYESEAVEAMIRTSEKRG--------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       188 ~e~vf~~es~sV~~~~~~a~~~G--------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      +.+++...++++..++..+.+.|                          .++..++++..++.++.++|++.|...    
T Consensus        87 ~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~----  162 (405)
T 2vi8_A           87 ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH----  162 (405)
T ss_dssp             EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH----
T ss_pred             eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc----
Confidence            55433332333333333222222                          244444443124568899999998741    


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC---CCCcEEEEcccccCCCCCCceEE
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL---VRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~---~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                       ++++|.+..  +..|...|++.+ ++|+++|+++++|+++..+.  ...+...   ..+|++++|+||+||+ |.| |+
T Consensus       163 -~~~~v~~~~--~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~di~~~s~sK~~~g-~~g-G~  235 (405)
T 2vi8_A          163 -RPKLIVAAA--AAYPRIIDFAKFREIADEVGAYLMVDMAHIAGL--VAAGLHPNPVPYAHFVTTTTHKTLRG-PRG-GM  235 (405)
T ss_dssp             -CCSEEEECC--SSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTSSCCSTTTCSEEEEESSSTTCC-CSC-EE
T ss_pred             -CCeEEEEeC--CCCCccCCHHHHHHHHHHcCCEEEEEccccccc--cccCcCCCccccCCEEEEeccccCCC-CCC-eE
Confidence             367777632  346888899865 58999999999999987542  1112211   1689999999999976 788 99


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      +++++++.+.+.+...                               .   +..||++...++++.              
T Consensus       236 ~~~~~~~~~~l~~~~~-------------------------------~---~~~~~~~~~~~aa~~--------------  267 (405)
T 2vi8_A          236 ILCQEQFAKQIDKAIF-------------------------------P---GIQGGPLMHVIAAKA--------------  267 (405)
T ss_dssp             EEECHHHHHHHHHHHT-------------------------------T---TTCSSCCHHHHHHHH--------------
T ss_pred             EEEcHHHHHHHHhhhc-------------------------------c---cccCCCCHHHHHHHH--------------
Confidence            9998765443332100                               0   234666776665544              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                ++++.+...+++.+.++.+.+.++|.+.|.++      |   +++++|.   ..
T Consensus       268 --------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~  309 (405)
T 2vi8_A          268 --------------------------VAFGEALQDDFKAYAKRVVDNAKRLASALQNE------G---FTLVSGG---TD  309 (405)
T ss_dssp             --------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CS
T ss_pred             --------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---CeEecCC---CC
Confidence                                      47776654578889999999999999999886      2   5666653   24


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      +.++.+.+.+. +  ++...+.+.+.++||.++.|..|....                              .....+.+
T Consensus       310 ~~~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~g~~~~~~~------------------------------~~~~~~~i  356 (405)
T 2vi8_A          310 NHLLLVDLRPQ-Q--LTGKTAEKVLDEVGITVNKNTIPYDPE------------------------------SPFVTSGI  356 (405)
T ss_dssp             SSEEEEECGGG-T--CCHHHHHHHHHHHTEECEEECCTTCSS------------------------------CTTTCSEE
T ss_pred             ceEEEEEccCC-C--CCHHHHHHHHHHcCceeccCcCccccC------------------------------CCCCCCce
Confidence            77888888642 1  234556666677899999887541100                              00112579


Q ss_pred             EEecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454          558 TASLGYL----ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       558 R~Slg~~----tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+|++.+    .+.+|++++++.|++++..
T Consensus       357 Ris~~~~~~~~~~~~~i~~~~~~l~~~~~~  386 (405)
T 2vi8_A          357 RIGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             EEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             EEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence            9999984    5699999999999998854

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.84  E-value=1.9e-20  Score=200.25  Aligned_cols=327  Identities=10%  Similarity=0.042  Sum_probs=185.4

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      ...-.||.+++...+.+.+++..                        .+|+.+.+.|+.......++.|++|++++|++ 
T Consensus        27 ~~~~p~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~-   81 (398)
T 1gc0_A           27 ALVPPVYQTATFTFPTVEYGAAC------------------------FAGEQAGHFYSRISNPTLNLLEARMASLEGGE-   81 (398)
T ss_dssp             BSSCCBCCCSCBCCC---------------------------------------------CCHHHHHHHHHHHHHHTCS-
T ss_pred             CcCCCccCCCccccCCHHHHHHh------------------------hcCCcCCCcccCCCChHHHHHHHHHHHHhCCC-
Confidence            34678999999888777666431                        13344444455445567889999999999986 


Q ss_pred             CcEEEeccCchHHHHHHH-------------------------HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          188 NDYVYDYESEAVEAMIRT-------------------------SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       188 ~e~vf~~es~sV~~~~~~-------------------------a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      +.+++...++++..++..                         ++..|+++..++..      +.++|++.|..      
T Consensus        82 ~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------d~~~l~~~i~~------  149 (398)
T 1gc0_A           82 AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA------DLQALEAAMTP------  149 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT------CHHHHHHHCCT------
T ss_pred             cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC------CHHHHHHhcCC------
Confidence            555553322232222222                         23456666655432      67888888853      


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEE
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~  319 (603)
                      ++++|.+...+|.||.++|++.| ++|+++|+++++|.++..+.  ....+ .+++|+++.|+||+||+ |.+  .|+++
T Consensus       150 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~-~~~~d~~~~S~sK~~~~-~~~~~~G~l~  225 (398)
T 1gc0_A          150 ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPY--LQRPL-ELGADLVVHSATKYLSG-HGDITAGIVV  225 (398)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHH--HCCGG-GGTCSEEEEETTTTTTC-SSSCCCEEEE
T ss_pred             CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCceEEEECCccccCC-CCCCeEEEEE
Confidence            68999999999999999999966 58999999999999998775  22233 35799999999999986 655  58898


Q ss_pred             EeCCCCc-CcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          320 VKKSTVP-ILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       320 vkk~~~~-~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      ++++.+. .+.+..                               ..   +..++.+....+++.               
T Consensus       226 ~~~~~~~~~~~~~~-------------------------------~~---~~~~~~~~~~~~~~~---------------  256 (398)
T 1gc0_A          226 GSQALVDRIRLQGL-------------------------------KD---MTGAVLSPHDAALLM---------------  256 (398)
T ss_dssp             ECHHHHHHHHHTHH-------------------------------HH---HTCCCCCHHHHHHHH---------------
T ss_pred             EChHHHHHHHHHHh-------------------------------hc---cCCCCCCHHHHHHHH---------------
Confidence            8875432 222100                               00   013444443332221               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC------CCCCCCCceEEEeCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ------HPNTEGNALVKIYGPK  472 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~------h~~~~g~plv~Iygp~  472 (603)
                                               ++++.+.. -++...+..+.|.+    .|.+++      ++.-...|.++++++.
T Consensus       257 -------------------------~~l~~~~~-~~~~~~~~~~~l~~----~L~~~~~v~~v~~~~l~~~~~~~~~~~~  306 (398)
T 1gc0_A          257 -------------------------RGIKTLNL-RMDRHCANAQVLAE----FLARQPQVELIHYPGLASFPQYTLARQQ  306 (398)
T ss_dssp             -------------------------HHHTTHHH-HHHHHHHHHHHHHH----HHHTCTTEEEEEEC--------------
T ss_pred             -------------------------hccchHHH-HHHHHHHHHHHHHH----HHhcCCCeeEEECCCCCCCcCHHHHHhh
Confidence                                     34432211 13333444444444    444321      1100012345666653


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee---Ccc------cCccCCchhhhhhHHHHHhhhcccccccc
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY---GSL------HHIWFSDKYQKEKDNVLEKTDREAKSKSD  543 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~---G~~------C~~~~~~~~~~~~~~~l~~~~~~~~~~~~  543 (603)
                      . ...+++++|.+.+.      .+.+.+++++.+|.++.   |+.      |....+...   ..+.++.++        
T Consensus       307 ~-~~~~~~~~~~l~~~------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~---~~~~~~~~g--------  368 (398)
T 1gc0_A          307 M-SQPGGMIAFELKGG------IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSY---TPEERAHYG--------  368 (398)
T ss_dssp             ---CCTTEEEEEETTH------HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSS---CHHHHHHTT--------
T ss_pred             C-CCCceEEEEEECCC------HHHHHHHHHhCCCceeccCCCCcceeeecccccccccC---CHHHHHhcC--------
Confidence            2 24699999999752      24577788888888765   633      433221110   012222221        


Q ss_pred             cccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          544 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       544 ~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                              ...+.||+|+|..+|.+||+.|.++|+++
T Consensus       369 --------~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          369 --------ISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             --------CCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             --------CCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence                    22379999999999999999999999865

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.84  E-value=6.1e-19  Score=193.46  Aligned_cols=351  Identities=11%  Similarity=0.025  Sum_probs=212.9

Q ss_pred             HHHHHHhhccCcCC-CCceeeecCCCCCCCHHHHH-HHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHH
Q 007454           93 IDQIRAKEYYQLSL-SNHTCLDYFGIGLFSYNQLH-KQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQES  169 (603)
Q Consensus        93 vd~iR~~efp~L~~-~~~vYLDyaa~tl~~~~v~~-a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~  169 (603)
                      ++.+++.-.|.... ....||+|..+++.++.++. .+..++                        |+... +..+....
T Consensus        57 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------------------n~~~~~~~~~~~~~  112 (486)
T 1js3_A           57 LQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAI------------------------GCIGFSWAASPACT  112 (486)
T ss_dssp             HHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHH------------------------CCCCSSGGGCHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHHHHh------------------------CcCccccccChhHH
Confidence            35555432344321 23468888877766665554 343321                        11111 11122356


Q ss_pred             HHHHHHHHHHHHHcCCCCC---------cEEEecc-Cch----------------------------------------H
Q 007454          170 GLESAMKKRIMDFLNISEN---------DYVYDYE-SEA----------------------------------------V  199 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~---------e~vf~~e-s~s----------------------------------------V  199 (603)
                      ++++++++.+++++|++++         +.+|+.. +++                                        .
T Consensus       113 ~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h  192 (486)
T 1js3_A          113 ELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAH  192 (486)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCC
T ss_pred             HHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCc
Confidence            7888999999999999752         4455421 111                                        1


Q ss_pred             HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe
Q 007454          200 EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID  278 (603)
Q Consensus       200 ~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD  278 (603)
                      ..+...++..|++++.++++ .+++++.++|+++|..+.+......+|++++.+|.||.+.|++.| ++|+++|+++|+|
T Consensus       193 ~s~~~~~~~~G~~v~~v~~d-~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD  271 (486)
T 1js3_A          193 SSVERAGLIGGVKLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD  271 (486)
T ss_dssp             HHHHHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHhCCCceEEeecC-CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence            11223334458888899987 488999999999997532211123599999999999999999966 5899999999999


Q ss_pred             ccccCCCCCCCC-CCC-----CCCCcEEEEcccccCCCCCCceEEEEEeCCC--CcCcC--CCCCC-Cceeccccccccc
Q 007454          279 ACALGPKDMDSF-GLS-----LVRPDFLICSFYQIFGENPSGFGCLFVKKST--VPILV--DNTSS-GMVSLLPAKKQLW  347 (603)
Q Consensus       279 Aaq~~~~~m~~l-dls-----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~--~~~L~--p~~~g-G~v~~~~~~~~~~  347 (603)
                      +++.++.  ... ++.     ..++|++++++|||++. |.|+|+|++|+..  .+.+.  +.+.. +....    ....
T Consensus       272 ~a~g~~~--~~~~~~~~~~~g~~~adsi~~~~hK~~~~-p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~----~~~~  344 (486)
T 1js3_A          272 AAYAGSA--FICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS----GLIT  344 (486)
T ss_dssp             CTTGGGG--GGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHHHHGGGC------------C----CSCC
T ss_pred             hhhHHHH--HHCHHHHHHhcCccccCeeEEchhhhcCC-CcceEEEEEeCHHHHHHHhcCCchhhCCCcccc----cCCC
Confidence            9987654  111 111     13689999999999986 8899999998753  23332  22322 11100    0000


Q ss_pred             cccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH
Q 007454          348 LTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD  427 (603)
Q Consensus       348 ~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald  427 (603)
                      ...+     .       .   ++.|. .+ +++++.                                        .++.
T Consensus       345 ~~~~-----~-------~---~~~~r-r~-~~~~~~----------------------------------------~al~  367 (486)
T 1js3_A          345 DYRH-----W-------Q---LPLGR-RF-RSLKMW----------------------------------------FVFR  367 (486)
T ss_dssp             CGGG-----S-------S---SCSCC-CC-THHHHH----------------------------------------HHHH
T ss_pred             Cccc-----c-------C---CCCCC-ch-hHHHHH----------------------------------------HHHH
Confidence            0000     0       0   11111 11 122221                                        3555


Q ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCc
Q 007454          428 QVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENI  507 (603)
Q Consensus       428 ~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI  507 (603)
                      .+..-|+..+.++...+++++.+.|.+++        .++++++.    ..++++|.+.+.+  .+...+.++|.+ .|+
T Consensus       368 ~~g~~g~~~~~~~~~~~a~~l~~~L~~~~--------~~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~L~~-~g~  432 (486)
T 1js3_A          368 MYGVKGLQAYIRKHVQLSHEFEAFVLQDP--------RFEVCAEV----TLGLVCFRLKGSD--GLNEALLERINS-ARK  432 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCT--------TEEECSCC----CSSEEEEEESSCH--HHHHHHHHHHHH-HTS
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcCC--------CeEEeCCC----ceeEEEEEecChH--HHHHHHHHHHHh-cCC
Confidence            44444788888899999999999998753        28887752    4789999987532  123334455543 354


Q ss_pred             EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhh
Q 007454          508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .+..+..                            .        .+.+.+|+|+ +.++|.+||+++++.|+++++.
T Consensus       433 ~~~~~~~----------------------------~--------~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~  473 (486)
T 1js3_A          433 IHLVPCR----------------------------L--------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE  473 (486)
T ss_dssp             CBCEEEE----------------------------E--------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEE----------------------------E--------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            3211100                            0        1135899997 7789999999999999998865

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.83  E-value=2.2e-19  Score=196.00  Aligned_cols=147  Identities=12%  Similarity=0.094  Sum_probs=111.0

Q ss_pred             ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCc------------------------hHHHH-HHHHHHcCCEEEEE
Q 007454          162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYESE------------------------AVEAM-IRTSEKRGARVMSA  216 (603)
Q Consensus       162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~------------------------sV~~~-~~~a~~~Ga~V~~~  216 (603)
                      +.|+.......++.|++|++++|++ +.++|...++                        ++..+ ...+++.|+++..+
T Consensus       106 ~~y~r~~~~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v  184 (445)
T 1qgn_A          106 FEYGRYGNPTTVVLEEKISALEGAE-STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVI  184 (445)
T ss_dssp             CCBGGGCCHHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence            4455545567889999999999986 5665542222                        22211 12345568888777


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL  294 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~  294 (603)
                      +.+      +.++|++.|..      +| +||.+...+|+||.++|++.| ++|+++|+++++|.++..+..   .+.-.
T Consensus       185 ~~~------d~~~l~~ai~~------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~---~~~~~  249 (445)
T 1qgn_A          185 DPA------DVGALELALNQ------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN---QKALA  249 (445)
T ss_dssp             CSS------CHHHHHHHHHH------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT---CCTTT
T ss_pred             CCC------CHHHHHHHhcc------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc---CCccc
Confidence            653      68999999975      57 999999999999999999966 589999999999999987762   22234


Q ss_pred             CCCcEEEEcccccCCCCCCc---eEEEEEeCCCCc
Q 007454          295 VRPDFLICSFYQIFGENPSG---FGCLFVKKSTVP  326 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~  326 (603)
                      +++|+++.|+||+||  |.|   .|+++.++++++
T Consensus       250 ~g~Div~~S~sK~~g--g~gd~~~G~l~~~~~l~~  282 (445)
T 1qgn_A          250 LGADLVLHSATKFLG--GHNDVLAGCISGPLKLVS  282 (445)
T ss_dssp             TTCSEEEECTTTTTT--CSSSCCCEEEEECHHHHH
T ss_pred             cCCEEEEECCccccc--ccccceEEEEEECHHHHH
Confidence            689999999999999  667   999999876543

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.83  E-value=1.5e-19  Score=187.79  Aligned_cols=307  Identities=10%  Similarity=0.059  Sum_probs=202.2

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +..||||+++.++.++.+++++.+.+...        ..              +   .|  ..+..+++++.+++++|++
T Consensus        13 p~~i~l~~~~~~~~~~~v~~a~~~~~~~~--------~~--------------~---~g--~~~~~~~~~~~l~~~~g~~   65 (359)
T 1svv_A           13 PKPYSFVNDYSVGMHPKILDLMARDNMTQ--------HA--------------G---YG--QDSHCAKAARLIGELLERP   65 (359)
T ss_dssp             --CEECSCSCSSCCCHHHHHHHHHHTTCC--------CC--------------S---TT--CSHHHHHHHHHHHHHHTCT
T ss_pred             CeeEEecCCCcCCCCHHHHHHHHHHHhhc--------cc--------------c---cc--ccHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999987654211        00              0   01  2357789999999999998


Q ss_pred             CCcEEEeccC-chH---------------------HHHHH--HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC-CCC
Q 007454          187 ENDYVYDYES-EAV---------------------EAMIR--TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG-KKK  241 (603)
Q Consensus       187 ~~e~vf~~es-~sV---------------------~~~~~--~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~-~~~  241 (603)
                      +++++|+... +++                     .....  .++..|+++..++.+  ++.++.++|++.|..+. ...
T Consensus        66 ~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~  143 (359)
T 1svv_A           66 DADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGKLRVADIESALHENRSEHM  143 (359)
T ss_dssp             TSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSCCCHHHHHHHHHHSCSTTS
T ss_pred             CccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCeecHHHHHHHHHHHHhccC
Confidence            8888775321 111                     11111  245678888888875  67889999999997521 112


Q ss_pred             CCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccc---cCCCCCCCCCCCC----CCCcEEEEcccccCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACA---LGPKDMDSFGLSL----VRPDFLICSFYQIFGE  310 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq---~~~~~m~~ldls~----~~~Dflv~S~hK~fG~  310 (603)
                      .++++|.+.+. |.||.++|   ++.+ ++|+++|+++++|.++   ..+.  .+++...    ..+|++++|+||++| 
T Consensus       144 ~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~d~~~~s~~K~g~-  219 (359)
T 1svv_A          144 VIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS--PVNDLTLADIARLTDMFYIGATKAGG-  219 (359)
T ss_dssp             CEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTS--TTCCCCHHHHHHHCSEEEEECTTTTC-
T ss_pred             CCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcC--CCcchhhhhhhhcCCEEEEecccCCC-
Confidence            24899999988 67999999   6544 5789999999999998   4454  3444443    468999999999966 


Q ss_pred             CCCceEEEEEeCCCCcCcCCCCC-CCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454          311 NPSGFGCLFVKKSTVPILVDNTS-SGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK  389 (603)
Q Consensus       311 ~P~G~G~L~vkk~~~~~L~p~~~-gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~  389 (603)
                       |.|.|+|+++++.++.+.+... +|..                               +..   +....+++.      
T Consensus       220 -~~~~g~l~~~~~~~~~~~~~~~~~~~~-------------------------------~~~---~~~~~~~~~------  258 (359)
T 1svv_A          220 -MFGEALIILNDALKPNARHLIKQRGAL-------------------------------MAK---GWLLGIQFE------  258 (359)
T ss_dssp             -SSCEEEEECSGGGCTTHHHHHHHTTCC-------------------------------CTT---THHHHHHHH------
T ss_pred             -CCceEEEEEcccHHHHHHHHHhcCCcc-------------------------------ccc---chhhHHHHH------
Confidence             8899999998877655543110 1100                               000   111111111      


Q ss_pred             cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe
Q 007454          390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIY  469 (603)
Q Consensus       390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy  469 (603)
                                                           ..+...+++.+.++.+.++++|.+.| ++.     |   ++++
T Consensus       259 -------------------------------------~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~-----~---~~~~  292 (359)
T 1svv_A          259 -------------------------------------VLMKDNLFFELGAHSNKMAAILKAGL-EAC-----G---IRLA  292 (359)
T ss_dssp             -------------------------------------HHTSTTHHHHHHHHHHHHHHHHHHHH-HHT-----T---CCBS
T ss_pred             -------------------------------------HHHhhhhHHHHHHHHHHHHHHHHHHh-ccC-----C---eEEc
Confidence                                                 11222245677888899999999999 442     2   4555


Q ss_pred             CCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccC
Q 007454          470 GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDK  549 (603)
Q Consensus       470 gp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  549 (603)
                      +|.    .+..+.+.++        .+++++|.+++||.+ .|.      .                             
T Consensus       293 ~~~----~~~~~~~~~~--------~~~~~~l~~~~gi~v-~~~------~-----------------------------  324 (359)
T 1svv_A          293 WPS----ASNQLFPILE--------NTMIAELNNDFDMYT-VEP------L-----------------------------  324 (359)
T ss_dssp             SCC----SSSEECBEEE--------HHHHHHHTTTEECEE-EEE------E-----------------------------
T ss_pred             cCC----ccceEEEEcC--------HHHHHHHHHhcCEEE-Eec------c-----------------------------
Confidence            553    3556655554        245666666559988 110      0                             


Q ss_pred             CCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          550 ANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       550 ~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                       ....+.||+|+++.+|.+||+++++.|+++++
T Consensus       325 -~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  356 (359)
T 1svv_A          325 -KDGTCIMRLCTSWATEEKECHRFVEVLKRLVA  356 (359)
T ss_dssp             -TTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred             -cCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence             01125899999999999999999999998864

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.83  E-value=2.3e-20  Score=198.42  Aligned_cols=341  Identities=11%  Similarity=0.082  Sum_probs=212.1

Q ss_pred             hCCCCCCchhHHHHHHhhccCcCC-----CCc---eeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccc
Q 007454           83 AYPQYFDTYQIDQIRAKEYYQLSL-----SNH---TCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSY  153 (603)
Q Consensus        83 ~~p~y~~~~~vd~iR~~efp~L~~-----~~~---vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~  153 (603)
                      ....|..-.+++.+|+ +||.+..     ++.   .|+|++..++ .++.+++++.+.+...                  
T Consensus        16 ~~~~~~~~~~~~~~~~-~fp~~~~~~~~~~g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~------------------   76 (401)
T 2bwn_A           16 DEGRYRTFIDIEREKG-AFPKAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAV------------------   76 (401)
T ss_dssp             HTTCCCCCCEEEECTT-STTEEEEECTTSCEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHH------------------
T ss_pred             hcCCceehhhhhcccc-cccceecccccCCCCcEEEeeCCCcccCCCCHHHHHHHHHHHHHc------------------
Confidence            3334554445667887 6998841     122   3555544342 4667888877643211                  


Q ss_pred             cccccCc-cccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHH-----------------------HHHc
Q 007454          154 KTGNLKT-QLLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRT-----------------------SEKR  209 (603)
Q Consensus       154 ~~aN~~s-~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~-----------------------a~~~  209 (603)
                       ..|++. ...++  .....++.|++|++++|. +++++|+..+.+...++..                       ++..
T Consensus        77 -~~~~~~~~~~~~--~~~~~~~l~~~la~~~~~-~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~  152 (401)
T 2bwn_A           77 -GAGSGGTRNISG--TTAYHRRLEAEIAGLHQK-EAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRN  152 (401)
T ss_dssp             -CSCCCSBTTTBC--CBHHHHHHHHHHHHHTTC-SEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHS
T ss_pred             -CCCCCCcCcccC--ChHHHHHHHHHHHHHhCC-CcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHc
Confidence             112221 11122  235677899999999997 5677775443322222222                       1223


Q ss_pred             CCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC
Q 007454          210 GARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD  288 (603)
Q Consensus       210 Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~  288 (603)
                      |+++..++.+      +.++|++.|...+  .+++++|++++.+|.||.++|++.| ++|+++|+++++|+++..+. ..
T Consensus       153 g~~~~~v~~~------d~~~le~~l~~~~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~-~~  223 (401)
T 2bwn_A          153 AGPKRIFRHN------DVAHLRELIAADD--PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGM-YG  223 (401)
T ss_dssp             CCCEEEECTT------CHHHHHHHHHHSC--TTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SS
T ss_pred             CCeEEEEcCC------CHHHHHHHHHhhc--cCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccc-cC
Confidence            4444444432      6788988886311  1368999999999999999999855 58999999999999988432 00


Q ss_pred             C--CCC---CC--CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454          289 S--FGL---SL--VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ  361 (603)
Q Consensus       289 ~--ldl---s~--~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~  361 (603)
                      +  ..+   ..  -++|.++.|+.|.||  ..| |.++.+++..+.+...            ..                
T Consensus       224 ~~g~~~~~~~~~~~~~~i~~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~------------~~----------------  272 (401)
T 2bwn_A          224 PRGAGVAERDGLMHRIDIFNGTLAKAYG--VFG-GYIAASARMVDAVRSY------------AP----------------  272 (401)
T ss_dssp             TTSCCHHHHHTCGGGCSEEEEESSSTTC--SCC-EEEEECHHHHHHHHHH------------CH----------------
T ss_pred             CCCceeeeccCccccCcEEEeechhhcc--CCC-CEEecCHHHHHHHHHh------------Cc----------------
Confidence            1  111   01  147999999999999  446 8777665443222100            00                


Q ss_pred             CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454          362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG  441 (603)
Q Consensus       362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~  441 (603)
                        +..  +..||++ .+++++.                                        ++++++...|++.+.++.
T Consensus       273 --~~~--~~~~~~~-~~~~a~~----------------------------------------~al~~~~~~~~~~~~~~~  307 (401)
T 2bwn_A          273 --GFI--FSTSLPP-AIAAGAQ----------------------------------------ASIAFLKTAEGQKLRDAQ  307 (401)
T ss_dssp             --HHH--TSBCCCH-HHHHHHH----------------------------------------HHHHHHTSHHHHHHHHHH
T ss_pred             --Cce--ecCCCCH-HHHHHHH----------------------------------------HHHHHHHhcccHHHHHHH
Confidence              001  3456655 4443332                                        578877766778999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCC
Q 007454          442 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFS  520 (603)
Q Consensus       442 ~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~  520 (603)
                      +.+.++|.+.|.++      |   +++++|     +++++.|.+++  +  ++.. +.++|++++||.++.|...  +  
T Consensus       308 ~~~~~~l~~~L~~~------g---~~~~~~-----~~~~~~~~~~~--~--~~~~~~~~~L~~~~gi~v~~~~~~--~--  365 (401)
T 2bwn_A          308 QMHAKVLKMRLKAL------G---MPIIDH-----GSHIVPVVIGD--P--VHTKAVSDMLLSDYGVYVQPINFP--T--  365 (401)
T ss_dssp             HHHHHHHHHHHHHH------T---CCBCCC-----SSSCEEEECCC--H--HHHHHHHHHHHHHHCEECCEECTT--T--
T ss_pred             HHHHHHHHHHHHHC------C---CcccCC-----CCCeEEEEeCC--h--HHHHHHHHHHHhcCCEEEeecCCC--C--
Confidence            99999999999876      2   344443     35689998864  1  2223 3445556789998755321  0  


Q ss_pred             chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                                   ...+.+.||+|++.++|.+||+++++.|+++++
T Consensus       366 -----------------------------~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  398 (401)
T 2bwn_A          366 -----------------------------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA  398 (401)
T ss_dssp             -----------------------------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred             -----------------------------CCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence                                         001225899999999999999999999998864

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.83  E-value=1.7e-19  Score=191.58  Aligned_cols=320  Identities=10%  Similarity=0.050  Sum_probs=207.6

Q ss_pred             CCceeeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~tl~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      ++..|+|.++..++    ++.+++++.+.+..                    .++..+.+.+.........+.|++|+++
T Consensus        43 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~l~~~la~~  102 (401)
T 1fc4_A           43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--------------------HGFGMASVRFICGTQDSHKELEQKLAAF  102 (401)
T ss_dssp             TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--------------------HCSCCCSCHHHHCCBHHHHHHHHHHHHH
T ss_pred             CCccEEEeeccCcccccCCHHHHHHHHHHHHH--------------------hCCCCCCCCcccCCcHHHHHHHHHHHHH
Confidence            45679999887665    67888887653221                    0111111111111135678999999999


Q ss_pred             cCCCCCcEEEeccCchHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          183 LNISENDYVYDYESEAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       183 lna~~~e~vf~~es~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      +|++ +.+++...++++.                     .+...++..|+++..++.      ++.++|++.|...+...
T Consensus       103 ~g~~-~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~  175 (401)
T 1fc4_A          103 LGME-DAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQELEARLKEAREAG  175 (401)
T ss_dssp             HTCS-EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHHHHHHHHHHHHHTT
T ss_pred             hCCC-cEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC------CCHHHHHHHHHHhhccC
Confidence            9997 5554432222221                     122334455666665542      36889999886421111


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCCcEEEEcccccCCCCC
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      .++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+.. .+        +++.. ++|+++.|+||+|++ |
T Consensus       176 ~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~-~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~-~  252 (401)
T 1fc4_A          176 ARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV-GENGRGSHEYCDVMG-RVDIITGTLGKALGG-A  252 (401)
T ss_dssp             CSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS-STTSCCHHHHTTCTT-CCSEEEEESSSTTCS-S
T ss_pred             CCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECccccccc-CCCCCccHHHcCCCc-CCcEEEecchhhccC-C
Confidence            157899999999999999999865 589999999999999864330 11        55543 689999999999943 5


Q ss_pred             CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                      .| |++++++++++.+....            .                  +.   .-.++.|....+++.         
T Consensus       253 ~g-G~~~~~~~~~~~l~~~~------------~------------------~~---~~~~~~~~~~~~a~~---------  289 (401)
T 1fc4_A          253 SG-GYTAARKEVVEWLRQRS------------R------------------PY---LFSNSLAPAIVAASI---------  289 (401)
T ss_dssp             SC-EEEEECHHHHHHHHHHC------------H------------------HH---HHSCCCCHHHHHHHH---------
T ss_pred             CC-EEEEcCHHHHHHHHHhC------------c------------------Cc---eeCCCCCHHHHHHHH---------
Confidence            57 99999876654333200            0                  00   013344555444332         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                     ++++.+..  ++.+.++.+.++++|.+.|.++      |   ++++ | 
T Consensus       290 -------------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g---~~~~-~-  325 (401)
T 1fc4_A          290 -------------------------------KVLEMVEA--GSELRDRLWANARQFREQMSAA------G---FTLA-G-  325 (401)
T ss_dssp             -------------------------------HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHT------T---CCBC-C-
T ss_pred             -------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C---Cccc-C-
Confidence                                           46776654  4778889999999999999876      2   2333 2 


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                         ..++++.+.+++.    .....+.+.+.++||.++.|..|...                                 .
T Consensus       326 ---~~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~~---------------------------------~  365 (401)
T 1fc4_A          326 ---ADHAIIPVMLGDA----VVAQKFARELQKEGIYVTGFFYPVVP---------------------------------K  365 (401)
T ss_dssp             ---SSSSEEEEEEECH----HHHHHHHHHHHHTTEECCEECTTSSC---------------------------------T
T ss_pred             ---CCCCEEEEEcCCh----HHHHHHHHHHHHCCcEEeeecCCCCC---------------------------------C
Confidence               3688999988641    12233444444569999987655210                                 1


Q ss_pred             CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          553 GITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ..+.+|+|++.++|.+|++++++.|++++.+
T Consensus       366 ~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  396 (401)
T 1fc4_A          366 GQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence            1258999999999999999999999998764

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=99.83  E-value=1.5e-18  Score=187.08  Aligned_cols=318  Identities=14%  Similarity=0.113  Sum_probs=211.4

Q ss_pred             CceeeecCCCCC----CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454          108 NHTCLDYFGIGL----FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL  183 (603)
Q Consensus       108 ~~vYLDyaa~tl----~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l  183 (603)
                      +.-|+|.++..+    .++.+++++.+.+...                  ..+++.+...+|.  .....+.|++|++++
T Consensus        63 g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~G~--~~~~~~l~~~la~~~  122 (427)
T 2w8t_A           63 GKDTILLGTYNYMGMTFDPDVIAAGKEALEKF------------------GSGTCGSRMLNGT--FHDHMEVEQALRDFY  122 (427)
T ss_dssp             TEEEEECSCCCTTCGGGCHHHHHHHHHHHHHH------------------CSCCCSCTTTTCC--CHHHHHHHHHHHHHH
T ss_pred             CceEEEEECcccccCCCCHHHHHHHHHHHHHh------------------CCCCcccccccCC--cHHHHHHHHHHHHHh
Confidence            456788877753    5677888776543210                  0012222222222  256678999999999


Q ss_pred             CCCCCcEEEeccCchHHHHH---------------------HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          184 NISENDYVYDYESEAVEAMI---------------------RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       184 na~~~e~vf~~es~sV~~~~---------------------~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      |++ +.+++...++++..++                     ..++..|+++..++      .++.++|++.|...+  ..
T Consensus       123 g~~-~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~------~~d~~~le~~l~~~~--~~  193 (427)
T 2w8t_A          123 GTT-GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFR------HNSVEDLDKRLGRLP--KE  193 (427)
T ss_dssp             TCS-EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEEC------TTCHHHHHHHHHTSC--SS
T ss_pred             CCC-ceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeC------CCCHHHHHHHHHhcc--CC
Confidence            985 4455443222322222                     22334466655543      257899999997421  12


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC---------CCCCCCCCcEEEEcccccCCCCC
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS---------FGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~---------ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                      ++++|++...+|+||.+.|++.+ ++|+++|+++++|.++..+.  ..         +++. .++|+++.|++|+||  +
T Consensus       194 ~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~--~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g--~  268 (427)
T 2w8t_A          194 PAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF--FGPNGRGVYEAQGLE-GQIDFVVGTFSKSVG--T  268 (427)
T ss_dssp             SCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT--SSTTSCCHHHHTTCT-TCCSEEEEESSSTTC--S
T ss_pred             CCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc--cCCCCCchHhhcCCC-cCCcEEEecchhhhc--c
Confidence            68999999999999999999865 58999999999999988765  22         5553 378999999999999  6


Q ss_pred             CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                      .| |+++.++++++.+.+.   +        .. +                     .-.++.|...++++.         
T Consensus       269 ~g-G~v~~~~~l~~~l~~~---~--------~~-~---------------------~~~~~~~~~~~aa~~---------  305 (427)
T 2w8t_A          269 VG-GFVVSNHPKFEAVRLA---C--------RP-Y---------------------IFTASLPPSVVATAT---------  305 (427)
T ss_dssp             CC-EEEEECCTTGGGGGGT---C--------HH-H---------------------HSSCCCCHHHHHHHH---------
T ss_pred             CC-CEEEeCHHHHHHHHHh---c--------cc-c---------------------cccCCCCHHHHHHHH---------
Confidence            67 9999998877655431   0        00 0                     013455555444332         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                     ++++.++.  ++.+.++.+.+.++|.+.|.++      |   +.++++.
T Consensus       306 -------------------------------~al~~~~~--~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~  343 (427)
T 2w8t_A          306 -------------------------------TSIRKLMT--AHEKRERLWSNARALHGGLKAM------G---FRLGTET  343 (427)
T ss_dssp             -------------------------------HHHHHHTS--CHHHHHHHHHHHHHHHHHHHHH------T---CEESCSS
T ss_pred             -------------------------------HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHc------C---CcccCCC
Confidence                                           46666542  5788889999999999999876      2   4555442


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                         .+++++.|.+.+.   .-...+.++|. ++||.++.|..+..                                 ..
T Consensus       344 ---~~~~~~~~~~~~~---~~~~~l~~~L~-~~Gi~v~~~~~~~~---------------------------------~~  383 (427)
T 2w8t_A          344 ---CDSAIVAVMLEDQ---EQAAMMWQALL-DGGLYVNMARPPAT---------------------------------PA  383 (427)
T ss_dssp             ---CCSSEEEEEESSH---HHHHHHHHHHH-HTTEECEEECTTTS---------------------------------CT
T ss_pred             ---CCCCEEEEEECCH---HHHHHHHHHHH-HCCeEEeeeCCCCC---------------------------------CC
Confidence               2678999998641   01123444554 45999988754321                                 01


Q ss_pred             CCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          553 GITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       553 ~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      +.+.||+|++.++|.+||+++++.|++++.+.
T Consensus       384 ~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~  415 (427)
T 2w8t_A          384 GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAV  415 (427)
T ss_dssp             TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            23589999999999999999999999998664

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.83  E-value=2.5e-20  Score=193.08  Aligned_cols=256  Identities=13%  Similarity=0.054  Sum_probs=160.9

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh-CCcEEEEeccccC
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE-NDWHILIDACALG  283 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e-~g~~vlvDAaq~~  283 (603)
                      +++.|+++..++.      ++.++|++.|.      +++++|.+++.+|.||.++|++.+ ++|++ +|+++++|+++..
T Consensus        58 ~~~~g~~~~~~~~------~d~~~l~~~i~------~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~  125 (331)
T 1pff_A           58 LRKFGVEVDFIDM------AVPGNIEKHLK------PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFAS  125 (331)
T ss_dssp             HHHTTCEEEEECT------TSTTHHHHTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTH
T ss_pred             HHhcCCEEEEeCC------CCHHHHHHhhc------CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcc
Confidence            5567888888765      25677887775      368999999999999999999866 58999 9999999999987


Q ss_pred             CCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454          284 PKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       284 ~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                      +.  ...++ .+++|++++|+||+||. |.|  .|++++++ +..+.+.+...++                         
T Consensus       126 ~~--~~~~~-~~~~d~~~~s~~K~~~~-~~~r~~G~~~~~~~~~~~~l~~~~~~~-------------------------  176 (331)
T 1pff_A          126 PI--LTNPL-DLGVDIVVHSATKYING-HTDVVAGLVCSRADIIAKVKSQGIKDI-------------------------  176 (331)
T ss_dssp             HH--HCCGG-GGTCSEEEEETTTTTSS-SSSCCCEEEEECHHHHHHHHHTCCCCC-------------------------
T ss_pred             cc--cCChh-hcCCcEEEEECccccCC-CCCceEEEEEeCcHHHHHHHHHHHHhh-------------------------
Confidence            75  23334 46899999999999986 766  79999987 6655454322110                         


Q ss_pred             cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454          361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR  440 (603)
Q Consensus       361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r  440 (603)
                               -.++.+......+.                                        .+++.... -++.....
T Consensus       177 ---------~~~~~~~~~~~~~~----------------------------------------~~l~~~~~-~~~~~~~~  206 (331)
T 1pff_A          177 ---------TGAIISPHDAWLIT----------------------------------------RGTLTLDM-RVKRAAEN  206 (331)
T ss_dssp             ---------CCCCCCHHHHHHHH----------------------------------------HHHHHHHH-HHHHHHHH
T ss_pred             ---------cCCCCCHHHHHHHH----------------------------------------cCcchHHH-HHHHHHHH
Confidence                     01122222221111                                        23332211 12334444


Q ss_pred             HHHHHHHHHHHHhcCC---CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC-----
Q 007454          441 GRCLINWLVNALMKLQ---HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG-----  512 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~---h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G-----  512 (603)
                      ...+.++|.+. ..+.   .+.-...|.++++++.. ..++++++|.+.       +.+.+.+++++.||.++.+     
T Consensus       207 ~~~~~~~l~~~-~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~l~~~gI~~~~~s~g~~  277 (331)
T 1pff_A          207 AQKVAEFLHEH-KAVKKVYYPGLPDHPGHEIAKKQM-KMFGSMIAFDVD-------GLEKAKKVLDNCHVVSLAVSLGGP  277 (331)
T ss_dssp             HHHHHHHHHHC-TTCCCEECTTSTTSTTHHHHHHHC-SSCCSEEEEECS-------SHHHHHHHHHTCSSSEECSSCCSS
T ss_pred             HHHHHHHHHcC-CCeeEEECCCCCCCccHHHHHhhC-CCCceEEEEEEC-------CHHHHHHHHHhCCCceeccCCCCc
Confidence            45555554432 1111   00000122344444322 236899999986       2456778888999987655     


Q ss_pred             ----cccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          513 ----SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       513 ----~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                          ++|+...+....   ...+...                +...+.||+|+|.++|.+||++|+++|+++
T Consensus       278 ~sl~~~~~~~~~~~~~---~~~~~~~----------------g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          278 ESLIQHPASMTHAGVP---KEEREAA----------------GLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             SCEEECHHHHTSTTSC---HHHHHHT----------------TCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             ceeeecchhhcccccC---HHHHHhc----------------CCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                477654332110   1112121                122379999999999999999999998764

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.82  E-value=3e-18  Score=179.43  Aligned_cols=319  Identities=15%  Similarity=0.112  Sum_probs=211.2

Q ss_pred             CCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccc
Q 007454           84 YPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQL  162 (603)
Q Consensus        84 ~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~  162 (603)
                      .+.|.-...+.++++ +|..   ++.|+|+.+...+ .++.+++++.+.+...                   ..+|.   
T Consensus        13 ~~~~~~~~~~~~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~~---   66 (363)
T 3ffh_A           13 LSSYKPGKREEEVMA-ELGL---TKITKLSSNENPLGTSKKVAAIQANSSVET-------------------EIYPD---   66 (363)
T ss_dssp             CCC----CHHHHHHH-TTTC---SCCEECSSCSCTTCCCHHHHHHHHTCBSCC-------------------CBC-----
T ss_pred             CCCCCCCCCHHHHHH-hcCC---CceEEccCCCCCCCCCHHHHHHHHHHHHHh-------------------hcCCC---
Confidence            344554456677765 3543   4678998875553 6788889887643210                   01121   


Q ss_pred             cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccC
Q 007454          163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSW  220 (603)
Q Consensus       163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~  220 (603)
                             ....+.|++|++++|+++++++++...                      .+...+...++..|+++..++.++
T Consensus        67 -------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~  139 (363)
T 3ffh_A           67 -------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ  139 (363)
T ss_dssp             ---------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT
T ss_pred             -------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC
Confidence                   123589999999999999999875321                      112223445667799999999885


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhC--CcEEEEeccccC---CCCCCCCCC-C
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQEN--DWHILIDACALG---PKDMDSFGL-S  293 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~--g~~vlvDAaq~~---~~~m~~ldl-s  293 (603)
                       ++.++.++|++.+..      ++++|.++..+|.||.++|++.+. +++..  |+++++|.++..   ++....+.. .
T Consensus       140 -~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  212 (363)
T 3ffh_A          140 -DGEHDLEGMLNAIDE------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVR  212 (363)
T ss_dssp             -TSCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGG
T ss_pred             -CCCcCHHHHHHhccc------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhh
Confidence             788999999999863      699999999999999999998664 66655  999999999872   110011111 1


Q ss_pred             CCCCcEEEEcccccCCCCCCce--EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSGF--GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~--G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      ...-++++.|++|+||  +.|+  |++++++++.+.+.+..                                     ..
T Consensus       213 ~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~-------------------------------------~~  253 (363)
T 3ffh_A          213 TYKNLIITRTFSKIYG--LASARVGYGIADKEIIRQLNIVR-------------------------------------PP  253 (363)
T ss_dssp             TCTTEEEEEESSSTTC--CSSCCCEEEEECHHHHHHHHHTC-------------------------------------CS
T ss_pred             cCCCEEEEeechhhhc--CchhceeeeecCHHHHHHHHHhC-------------------------------------CC
Confidence            2344588899999999  5577  99999776654333210                                     11


Q ss_pred             CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                      .+.|..+.+++.                                        ++++..  -.++.+.++.+.++++|.+.
T Consensus       254 ~~~~~~~~~~~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~  291 (363)
T 3ffh_A          254 FNTTSIGQKLAI----------------------------------------EAIKDQ--AFIGECRTSNANGIKQYEAF  291 (363)
T ss_dssp             CCCBHHHHHHHH----------------------------------------HHHHCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHH----------------------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHH
Confidence            233334333322                                        344321  13677888899999999999


Q ss_pred             HhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          452 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       452 L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      |.++.     |   ++++.+     .+..+.+.+++      +...+.+.+.++||.++.|..+.               
T Consensus       292 l~~~~-----g---~~~~~~-----~~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~---------------  337 (363)
T 3ffh_A          292 AKRFE-----K---VKLYPA-----NGNFVLIDLGI------EAGTIFSYLEKNGYITRSGAALG---------------  337 (363)
T ss_dssp             HHHCT-----T---CEECCC-----CSSEEEEECSS------CHHHHHHHHHHTTEECEETTTTT---------------
T ss_pred             HhhCC-----C---ceECCC-----CCeEEEEECCC------CHHHHHHHHHHCCeEEEeCccCC---------------
Confidence            98742     2   555533     46788888764      23344444456799999885431               


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                          . .+.||+|++   |.+|++++++.|++++
T Consensus       338 --------------------~-~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          338 --------------------F-PTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             --------------------C-TTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             --------------------C-CCeEEEECC---CHHHHHHHHHHHHHhC
Confidence                                1 269999988   9999999999998764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.82  E-value=8.9e-20  Score=194.72  Aligned_cols=177  Identities=10%  Similarity=0.039  Sum_probs=125.6

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      ...|.|+.+++...+.+.+++..+                        .|+.+.+.|+.......++.|++|++++|++ 
T Consensus        26 ~~~~~d~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-   80 (398)
T 2rfv_A           26 ALSTPIFQTSTFVFDSAEQGAARF------------------------ALEESGYIYTRLGNPTTDALEKKLAVLERGE-   80 (398)
T ss_dssp             CSSCCCCCCSBCCCSSHHHHHHHC-----------------------------CCSBTTTCCHHHHHHHHHHHHHHTCS-
T ss_pred             CcCCCCcCCCccccCCHHHHHHhh------------------------cCCCCCCceeCCCChHHHHHHHHHHHHhCCC-
Confidence            467999999999988888876531                        1222233333334467789999999999986 


Q ss_pred             CcEEEeccCc------------------------hHHH-HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          188 NDYVYDYESE------------------------AVEA-MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       188 ~e~vf~~es~------------------------sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      +.+++..-++                        ++.. +...++..|.++..++.+      +.++|++.|..      
T Consensus        81 ~~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~------d~~~l~~~i~~------  148 (398)
T 2rfv_A           81 AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA------KPEEIRAAMRP------  148 (398)
T ss_dssp             EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCCT------
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC------CHHHHHHhcCC------
Confidence            4454432222                        2211 112235667777777653      67888888853      


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEE
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~  319 (603)
                      ++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+.  ....+ .+++|+++.|+||+||+ |.+  .|+++
T Consensus       149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~-~~~~di~~~s~sK~~~~-~g~~~~G~~~  224 (398)
T 2rfv_A          149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPY--CQQPL-QLGADIVVHSVTKYING-HGDVIGGIIV  224 (398)
T ss_dssp             TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTT--TCCGG-GGTCSEEEEETTTTTTC-SSCCCCEEEE
T ss_pred             CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCch-hhCCcEEEEeCcccccC-CCCceEEEEE
Confidence            68999999999999999999866 58999999999999988775  22112 35799999999999976 665  59999


Q ss_pred             EeCCCC
Q 007454          320 VKKSTV  325 (603)
Q Consensus       320 vkk~~~  325 (603)
                      ++++.+
T Consensus       225 ~~~~~~  230 (398)
T 2rfv_A          225 GKQEFI  230 (398)
T ss_dssp             ECHHHH
T ss_pred             ECHHHH
Confidence            887654

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.82  E-value=3.7e-19  Score=188.00  Aligned_cols=322  Identities=13%  Similarity=0.096  Sum_probs=206.3

Q ss_pred             CceeeecCCCCCC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454          108 NHTCLDYFGIGLF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL  183 (603)
Q Consensus       108 ~~vYLDyaa~tl~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l  183 (603)
                      +.-|+|.++..++    ++.+++++.+.+...                  ....+.+...+|  .....++.|+.|++++
T Consensus        42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~g--~~~~~~~l~~~la~~~  101 (399)
T 3tqx_A           42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQY------------------GFGMASVRFICG--TQTIHKELEKDISEFL  101 (399)
T ss_dssp             TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHH------------------CSCCCSCCCCCC--CBHHHHHHHHHHHHHH
T ss_pred             CeeEEEeeccCcccccCCHHHHHHHHHHHHHh------------------CCCCCCcCcccc--CchHHHHHHHHHHHHH
Confidence            4568999888653    477777766533211                  001111111122  2356789999999999


Q ss_pred             CCCCCcEEEeccCchHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          184 NISENDYVYDYESEAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       184 na~~~e~vf~~es~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      |.+ +.+++...++++.                     .+...++..|+++..++.      ++.++|++.|...+....
T Consensus       102 ~~~-~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~~~~~~  174 (399)
T 3tqx_A          102 GTD-DTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN------NAMGDLEAKLKEADEKGA  174 (399)
T ss_dssp             TCS-EEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT------TCTTHHHHHHHHHHTTTC
T ss_pred             CCC-cEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC------CCHHHHHHHHHhhhccCC
Confidence            985 4555543222222                     223344455666666653      356788888875221112


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC----CCCCC--CCCcEEEEcccccCCCCCCce
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS----FGLSL--VRPDFLICSFYQIFGENPSGF  315 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~----ldls~--~~~Dflv~S~hK~fG~~P~G~  315 (603)
                      ++++|+++..+|.||.++|++.+ ++|+++|+++++|.++..+..-..    ++...  .++|+++.|+||+||+ |.| 
T Consensus       175 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g-~~g-  252 (399)
T 3tqx_A          175 RFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGG-ASG-  252 (399)
T ss_dssp             SSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCS-SCC-
T ss_pred             CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhccc-Cce-
Confidence            68999999999999999999855 589999999999999854420000    11111  2689999999999986 667 


Q ss_pred             EEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchh
Q 007454          316 GCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEI  395 (603)
Q Consensus       316 G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i  395 (603)
                      |+++.+++.++.+...   +         .                   ..  .-.++.+...++++.            
T Consensus       253 G~~~~~~~~~~~~~~~---~---------~-------------------~~--~~~~~~~~~~~~~~~------------  287 (399)
T 3tqx_A          253 GYTSGHKEIIEWLRNR---S---------R-------------------PY--LFSNTVAPVIVATSL------------  287 (399)
T ss_dssp             EEEEECHHHHHHHHHH---C---------H-------------------HH--HSSCCCCHHHHHHHH------------
T ss_pred             EEEEcCHHHHHHHHHh---C---------c-------------------ce--eccCCCcHHHHHHHH------------
Confidence            9998887665433320   0         0                   00  114455555544332            


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCC
Q 007454          396 SEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRF  475 (603)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~  475 (603)
                                                  .+++... .+++.+.++.+.+.++|.+.|.++      |.   +++.     
T Consensus       288 ----------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~------g~---~~~~-----  324 (399)
T 3tqx_A          288 ----------------------------KVLELLK-TEGPQLRKQLQENSRYFRAGMEKL------GF---QLVP-----  324 (399)
T ss_dssp             ----------------------------HHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHH------TC---CBCC-----
T ss_pred             ----------------------------HHHHHHh-hccHHHHHHHHHHHHHHHHHHHHc------CC---CcCC-----
Confidence                                        4666553 367889999999999999999886      22   2222     


Q ss_pred             CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          476 DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       476 ~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      ..++++.|.+++..   -...+.++|. ++||.++.+.+...                                 ..+.+
T Consensus       325 ~~~~~~~~~~~~~~---~~~~~~~~l~-~~gi~v~~~~~~~~---------------------------------~~~~~  367 (399)
T 3tqx_A          325 GNHPIIPVMLGDAQ---LATNMADHLL-QEGIYVVGFSYPVV---------------------------------PMGKA  367 (399)
T ss_dssp             CSSSEEEEEEECHH---HHHHHHHHHH-HTTEECCEECTTTS---------------------------------CTTCE
T ss_pred             CCCCEEEEEeCCHH---HHHHHHHHHH-HCCCEEeeeCCCCC---------------------------------CCCCc
Confidence            35788888886521   1123344555 47999986532110                                 11236


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .||+|+++++|.+||+++++.|++++++
T Consensus       368 ~iRi~~~~~~~~~~i~~~~~~l~~~~~~  395 (399)
T 3tqx_A          368 RIRVQMSAVHTQQQLDRAIEAFGQVGKK  395 (399)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998865

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.82  E-value=1.4e-18  Score=182.19  Aligned_cols=318  Identities=9%  Similarity=0.035  Sum_probs=212.5

Q ss_pred             hCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc
Q 007454           83 AYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ  161 (603)
Q Consensus        83 ~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~  161 (603)
                      ..++|.......++++. |..   ++.++|+.+... +.++.+++++.+.+...                   ..++...
T Consensus        10 ~~~~~~~~~~~~~~~~~-~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~~~~   66 (365)
T 3get_A           10 NLSNYEPGKDIEVIAKE-YGV---KEVIKLASNENPFGTPPKAIECLRQNANKA-------------------HLYPDDS   66 (365)
T ss_dssp             GSCCCCCCCCHHHHHHH-TTC---SCCEECSSCCCTTCSCHHHHHHHHHHGGGT-------------------TSCCCTT
T ss_pred             hcCCCCCCCCHHHHHHh-cCC---CceEEecCCCCCCCCCHHHHHHHHHHHHhh-------------------ccCCCCC
Confidence            34455554567777663 654   467999977555 46788888877643210                   0111111


Q ss_pred             ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEec-
Q 007454          162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEF-  218 (603)
Q Consensus       162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~-  218 (603)
                                ..+.|++|++++|+++++++++...                      .+.......++..|+++..+++ 
T Consensus        67 ----------~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~  136 (365)
T 3get_A           67 ----------MIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI  136 (365)
T ss_dssp             ----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSSS
T ss_pred             ----------hHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecC
Confidence                      1378999999999998999875321                      1122234455667999999887 


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHH--hCCcEEEEecccc------CCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQ--ENDWHILIDACAL------GPKDMDS  289 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~--e~g~~vlvDAaq~------~~~~m~~  289 (603)
                      + .++ ++.++|++.+..      ++++|.++..+|.||.++|++.+. +++  ++|+++++|.++.      .+.  .+
T Consensus       137 ~-~~~-~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~--~~  206 (365)
T 3get_A          137 T-HNL-DEFKKLYETHKD------EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSK--KH  206 (365)
T ss_dssp             S-CCH-HHHHHHHHHTTT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGG--GC
T ss_pred             C-CCC-CCHHHHHHHhCC------CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCc--cc
Confidence            4 367 899999999863      689999999999999999998554 665  6799999999976      433  12


Q ss_pred             CCC----CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454          290 FGL----SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS  365 (603)
Q Consensus       290 ldl----s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~  365 (603)
                      .+.    ...+.++++.|++|+||.+..++|+++++++..+.+...                                  
T Consensus       207 ~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~----------------------------------  252 (365)
T 3get_A          207 LEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFYKL----------------------------------  252 (365)
T ss_dssp             CCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHHHH----------------------------------
T ss_pred             ccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHHHh----------------------------------
Confidence            322    224678999999999983223479998866554333210                                  


Q ss_pred             ccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH
Q 007454          366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI  445 (603)
Q Consensus       366 ~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~  445 (603)
                         ....++|..+..++.                                        ++++..  -.++...++.+.++
T Consensus       253 ---~~~~~~~~~~~~~~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~  287 (365)
T 3get_A          253 ---RAPFNVSNLALKAAV----------------------------------------AAMDDD--EFTEKTLENNFSQM  287 (365)
T ss_dssp             ---SCTTCSCHHHHHHHH----------------------------------------HHHTCH--HHHHHHHHHHHHHH
T ss_pred             ---cCCCCcCHHHHHHHH----------------------------------------HHhCCH--HHHHHHHHHHHHHH
Confidence               001123444433332                                        344321  13677788888999


Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454          446 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQK  525 (603)
Q Consensus       446 ~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~  525 (603)
                      ++|.+.|.++      |   ++++.+     .+..+.+.+++.     +...+.+.+.++||.++.|..|.         
T Consensus       288 ~~l~~~l~~~------g---~~~~~~-----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~---------  339 (365)
T 3get_A          288 ELYKEFAKKH------N---IKIIDS-----YTNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG---------  339 (365)
T ss_dssp             HHHHHHHHHT------T---CEECCC-----SSSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT---------
T ss_pred             HHHHHHHHhC------C---CEECCC-----CCeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC---------
Confidence            9999999876      2   455543     466788887653     23445454556799999885542         


Q ss_pred             hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                                  .+.||+|++   |.+|++++++.|++++
T Consensus       340 ----------------------------~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          340 ----------------------------LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             ----------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             ----------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence                                        258999988   8999999999999876

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.81  E-value=6.7e-18  Score=185.62  Aligned_cols=265  Identities=10%  Similarity=0.031  Sum_probs=171.1

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~  282 (603)
                      +.++-.|++++.++.+ .+++++.++|+++|..++.....+.+|++++.++.||.+.|++.|. +|+++|+++|||+++.
T Consensus       203 ~~~~~~g~~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g  281 (481)
T 4e1o_A          203 KAGLISLVKMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYA  281 (481)
T ss_dssp             HHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTG
T ss_pred             HHHHhCCCceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhH
Confidence            3344568899999988 4899999999999975332223478899999999999999999664 8999999999999876


Q ss_pred             CCCCCC-CCC--CCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCC--cCc--CCCCCCCceeccccccccccccccCC
Q 007454          283 GPKDMD-SFG--LSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV--PIL--VDNTSSGMVSLLPAKKQLWLTDEFSS  354 (603)
Q Consensus       283 ~~~~m~-~ld--ls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~--~~L--~p~~~gG~v~~~~~~~~~~~~~~~~~  354 (603)
                      ++.-+. ...  +.. -++|++++++|||++. |.|.|+|++|+...  ..+  .+.+..+..    . ...+       
T Consensus       282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~-p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~----~-~~~~-------  348 (481)
T 4e1o_A          282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMV-HFDCTGFWVKDKYKLQQTFSVNPIYLRHAN----S-GVAT-------  348 (481)
T ss_dssp             GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESBHHHHHTTTCCCCGGGCCTT----T-TTSC-------
T ss_pred             HHHHhChhhHHHhcCcccCCEEEEChHHhcCC-CCceEEEEEeCHHHHHHHhcCCchhccCcc----c-CCCC-------
Confidence            652000 111  111 1469999999999887 89999999997532  111  122221100    0 0000       


Q ss_pred             CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454          355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL  434 (603)
Q Consensus       355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl  434 (603)
                       +..     ...  ++.|.. +. ++++.                                        .++..+...|+
T Consensus       349 -~~~-----~~~--~~~~r~-~~-~l~~~----------------------------------------~al~~~g~~g~  378 (481)
T 4e1o_A          349 -DFM-----HWQ--IPLSRR-FR-SVKLW----------------------------------------FVIRSFGVKNL  378 (481)
T ss_dssp             -CGG-----GGS--SSSCCC-CT-HHHHH----------------------------------------HHHHHHHHHHH
T ss_pred             -Ccc-----ccc--ccCCCC-cc-HHHHH----------------------------------------HHHHHhHHHHH
Confidence             000     000  122222 21 22221                                        45555544578


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454          435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      +.+.++...+++++.+.|.+++        .+++++|.    ..++|.|.+.+.+  .....+.++|.++..+.+..+  
T Consensus       379 ~~~~~~~~~~a~~l~~~L~~~~--------g~~~~~~~----~~~~v~f~~~~~~--~~~~~l~~~L~~~g~~~~~~~--  442 (481)
T 4e1o_A          379 QAHVRHGTEMAKYFESLVRNDP--------SFEIPAKR----HLGLVVFRLKGPN--SLTENVLKEIAKAGRLFLIPA--  442 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCT--------TEECCSCC----CSSEEEEEESSCH--HHHHHHHHHHHHHCSSBCEEE--
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC--------CeEEecCC----ceeEEEEEeCCch--HHHHHHHHHHHhCCeEEEEee--
Confidence            8888999999999999998763        37887653    5789999997532  123344555554422332210  


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~  583 (603)
                          .                               ..+.+.+|+|+. +.+|.+||+++++.|++++++
T Consensus       443 ----~-------------------------------~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~  477 (481)
T 4e1o_A          443 ----T-------------------------------IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL  477 (481)
T ss_dssp             ----E-------------------------------ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----E-------------------------------ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence                0                               012258999976 556999999999999998764

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.81  E-value=1.2e-19  Score=196.31  Aligned_cols=141  Identities=9%  Similarity=-0.006  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHHHHH-HHHHHcCCEEEEEeccCCc
Q 007454          168 ESGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVEAMI-RTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~~~~-~~a~~~Ga~V~~~~~~~~~  222 (603)
                      .....++.|++||+++|++ +.++|..                        ++.++..+. ..+++.|+++.+++.+   
T Consensus        80 ~~p~~~~le~~lA~l~g~~-~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~---  155 (415)
T 2fq6_A           80 GTLTHFSLQQAMCELEGGA-GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL---  155 (415)
T ss_dssp             CCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred             CCchHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC---
Confidence            3355678999999999985 4455421                        122222211 2234567887777643   


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEeccccCCCCCCCCCCCCCCCcE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPKDMDSFGLSLVRPDF  299 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~~m~~ldls~~~~Df  299 (603)
                         +.++|+++|+      ++|+||.+...+|+||.++|++.| ++|++  +|++|++|++|..+....++   .+++|+
T Consensus       156 ---d~~~le~ai~------~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~---~~g~Di  223 (415)
T 2fq6_A          156 ---IGADIVKHLQ------PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL---DFGIDV  223 (415)
T ss_dssp             ---CGGGGGGGCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG---GGTCSE
T ss_pred             ---CHHHHHHhhc------cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc---ccCCeE
Confidence               5667777775      369999999999999999999966 58999  99999999998865311345   368999


Q ss_pred             EEEcccccCCCCCCc---eEEEEEeCCCCc
Q 007454          300 LICSFYQIFGENPSG---FGCLFVKKSTVP  326 (603)
Q Consensus       300 lv~S~hK~fG~~P~G---~G~L~vkk~~~~  326 (603)
                      +++|+||++|  |.|   .|+++.+++.++
T Consensus       224 v~~S~sK~lg--~~g~~~~G~l~~~~~~~~  251 (415)
T 2fq6_A          224 SIQAATKYLV--GHSDAMIGTAVCNARCWE  251 (415)
T ss_dssp             EEEETTTTTT--CSSSCCCEEEEECTTTHH
T ss_pred             EEEeCccccC--CCCCceEEEEEeCHHHHH
Confidence            9999999999  545   699998876543

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.81  E-value=2.2e-20  Score=200.20  Aligned_cols=146  Identities=11%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             ccccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHHcCCEEEEEeccCC------------cc-c---c
Q 007454          162 LLHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEKRGARVMSAEFSWP------------RL-R---I  225 (603)
Q Consensus       162 ~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~~Ga~V~~~~~~~~------------~g-~---i  225 (603)
                      +.++......++++|++|++++|++ +.++|...++++..++. .-+.|.+|......++            .| .   +
T Consensus        47 ~~~~~~~~~~~~~lr~~la~~~g~~-~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v  124 (393)
T 1n8p_A           47 YEYSRSQNPNRENLERAVAALENAQ-YGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT  124 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred             cceecCCChhHHHHHHHHHHHhCCC-cEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEe
Confidence            4455555667889999999999986 45555543344444333 2234444443332211            00 0   1


Q ss_pred             ---CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhC----CcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEN----DWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~----g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                         + ++|+++|.      ++|++|++++.+|+||.++|++.| ++|+++    |+++++|++|..+.  . .++..+++
T Consensus       125 ~~~d-~~l~~~i~------~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~--~-~~~~~~~~  194 (393)
T 1n8p_A          125 NDLL-NDLPQLIK------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPY--I-SNPLNFGA  194 (393)
T ss_dssp             SSHH-HHHHHHSC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHH--H-CCGGGGTC
T ss_pred             CCCh-HHHHHhcc------cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccc--c-CCHHHcCC
Confidence               4 67777775      369999999999999999999966 589999    99999999998876  2 24445689


Q ss_pred             cEEEEcccccCCCCCCc--e-EEEEEe
Q 007454          298 DFLICSFYQIFGENPSG--F-GCLFVK  321 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~-G~L~vk  321 (603)
                      |++++|+||+||  |.|  + |+++++
T Consensus       195 di~~~S~sK~~g--~~G~rigG~~~~~  219 (393)
T 1n8p_A          195 DIVVHSATKYIN--GHSDVVLGVLATN  219 (393)
T ss_dssp             SEEEEETTTTTT--CSSCCCCEEEEES
T ss_pred             eEEEEECccccc--CCCCceeEEEEeC
Confidence            999999999999  778  7 887776

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.80  E-value=1.5e-17  Score=184.35  Aligned_cols=308  Identities=10%  Similarity=0.043  Sum_probs=194.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC--CcEEEeccC-ch-----------------------------------HHHHHHHHHH
Q 007454          167 QESGLESAMKKRIMDFLNISE--NDYVYDYES-EA-----------------------------------VEAMIRTSEK  208 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna~~--~e~vf~~es-~s-----------------------------------V~~~~~~a~~  208 (603)
                      ...++++++++.+++++|.++  ++.+|+... .+                                   ...+.+.++.
T Consensus       132 ~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~  211 (511)
T 3vp6_A          132 VFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA  211 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHH
Confidence            356788899999999999984  567665321 11                                   1112233344


Q ss_pred             cCC---EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          209 RGA---RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       209 ~Ga---~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      .|.   +++.++.++ +++++.++|+++|..++.....+++|++++.+|.||.+.|++.| ++|+++|+++|+|+++.++
T Consensus       212 ~g~g~~~~~~v~~d~-~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~  290 (511)
T 3vp6_A          212 LGFGTDNVILIKCNE-RGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGG  290 (511)
T ss_dssp             TTSCGGGEEEECBCT-TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             cCCCCCcEEEeecCC-CCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhh
Confidence            466   788888874 78999999999997533223348999999999999999999966 5899999999999998776


Q ss_pred             CCCC---CCCCC-CCCCcEEEEcccccCCCCCCceEEEEEeCCCC-cC---cCCCCCCCceeccccccccccccccCCCC
Q 007454          285 KDMD---SFGLS-LVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PI---LVDNTSSGMVSLLPAKKQLWLTDEFSSCE  356 (603)
Q Consensus       285 ~~m~---~ldls-~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~-~~---L~p~~~gG~v~~~~~~~~~~~~~~~~~~~  356 (603)
                      .-..   ...+. ..++|++++++|||||. |.|.|++++|+... ..   ..+.+..+.-.   .....+        +
T Consensus       291 ~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~-p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~---~~~~~~--------~  358 (511)
T 3vp6_A          291 LLMSRKHRHKLNGIERANSVTWNPHKMMGV-LLQCSAILVKEKGILQGCNQMHASYLFQQDK---HYDVSY--------D  358 (511)
T ss_dssp             GGGCTTTGGGGTTGGGCSEEEECTTSTTCC-CSCCEEEEESSTTHHHHHHCCCCTTTCCSSC---SSCGGG--------C
T ss_pred             HhhChhhhhhccCCccCCEEEECcccccCC-CcCeEEEEEeCHHHHHHHhccCCccccCccc---cccccc--------C
Confidence            5100   11222 23689999999999887 89999999988642 21   12222221100   000000        0


Q ss_pred             CCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHH
Q 007454          357 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM  436 (603)
Q Consensus       357 ~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~  436 (603)
                      ..     ...  ++.|.. + .++++.                                        .+++.+...|++.
T Consensus       359 ~~-----~~~--~~~~r~-~-~al~~~----------------------------------------~al~~~g~~gl~~  389 (511)
T 3vp6_A          359 TG-----DKA--IQCGRH-V-DIFKFW----------------------------------------LMWKAKGTVGFEN  389 (511)
T ss_dssp             CG-----GGS--SCSSCC-C-CHHHHH----------------------------------------HHHHHHHHHHHHH
T ss_pred             cc-----CCC--CCCCCc-h-HHHHHH----------------------------------------HHHHHHhHHHHHH
Confidence            00     000  112221 1 222222                                        4555555557888


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--CCc-----------cCHHHHHHHHh
Q 007454          437 ISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REK-----------IEPVLVQKLAD  503 (603)
Q Consensus       437 i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g~~-----------v~~~~V~~Lad  503 (603)
                      +.++...+++++.+.|.+++        .++++.+.  ....++|+|.+....  +..           +..++.++|.+
T Consensus       390 ~~~~~~~~a~~l~~~L~~~p--------g~~l~~~~--~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~  459 (511)
T 3vp6_A          390 QINKCLELAEYLYAKIKNRE--------EFEMVFNG--EPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMME  459 (511)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT--------TEEESSSS--CCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCC--------CEEEEecC--CCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998752        38888742  135788999875321  100           01123333433


Q ss_pred             cCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 007454          504 RENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL-GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       504 ~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl-g~~tt~eDVd~l~~~l~~~l~  582 (603)
                      +-.+.+..+     .                               ...+.+.+|+++ +..+|.+||+++++.|+++-+
T Consensus       460 ~G~~~~~~~-----~-------------------------------~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~  503 (511)
T 3vp6_A          460 SGTTMVGYQ-----P-------------------------------QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ  503 (511)
T ss_dssp             HTSCEEEEE-----E-------------------------------ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEE-----E-------------------------------eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            322222210     0                               001124799999 899999999999999988754

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.80  E-value=8.2e-19  Score=192.67  Aligned_cols=284  Identities=10%  Similarity=0.065  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHHHHcCCC--CCcEEEeccC-chHH-----------------------------HHHHHHHHcCCEEEE
Q 007454          168 ESGLESAMKKRIMDFLNIS--ENDYVYDYES-EAVE-----------------------------AMIRTSEKRGARVMS  215 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~--~~e~vf~~es-~sV~-----------------------------~~~~~a~~~Ga~V~~  215 (603)
                      ..++++++++.+++++|++  ++++++.... +++.                             .+...++..|++++.
T Consensus       105 ~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~  184 (497)
T 3mc6_A          105 VRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRH  184 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEE
Confidence            3577889999999999998  5677775432 1221                             223334456888889


Q ss_pred             EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC----------
Q 007454          216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP----------  284 (603)
Q Consensus       216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~----------  284 (603)
                      +++++.++.++.++|+++|..      ++++|+++..+|.||.+.|++.| ++|+++|+++++|+++.++          
T Consensus       185 v~~~~~~~~~d~~~l~~~i~~------~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~  258 (497)
T 3mc6_A          185 VELDPTTYQVDLGKVKKFINK------NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGY  258 (497)
T ss_dssp             ECBCTTTCSBCTTTTGGGCCS------SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTC
T ss_pred             EecCcccCcCCHHHHHHHHhh------CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcc
Confidence            988744788999999988863      68999999999999999999966 5899999999999997632          


Q ss_pred             -CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC----CCCCCCceeccccccccccccccCCCCCCc
Q 007454          285 -KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV----DNTSSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       285 -~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~----p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                       + +-+++....++|++++|+||++++ |.|+|++++++..+....    +.+.+|..      .               
T Consensus       259 ~~-~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~---------------  315 (497)
T 3mc6_A          259 KN-LPLLDFRVPGVTSISCDTHKYGFA-PKGSSVIMYRNSDLRMHQYYVNPAWTGGLY------G---------------  315 (497)
T ss_dssp             CS-CCCCSTTSTTCCEEEEETTTTTCC-CSSCEEEECSSHHHHTTTSCCBTTCTTSCB------C---------------
T ss_pred             cC-CccccccCCCCcEEEECchhhcCC-CCCceeEEecCHHHHhhhhcccccccCCCc------C---------------
Confidence             2 114777778999999999998654 889999999886543221    11212110      0               


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                         .+.    ..||.+...++++.                                        .+++.+...|+..+.+
T Consensus       316 ---~~~----~~g~~~~~~~~a~~----------------------------------------aal~~l~~~~~~~~~~  348 (497)
T 3mc6_A          316 ---SPT----LAGSRPGAIVVGCW----------------------------------------ATMVNMGENGYIESCQ  348 (497)
T ss_dssp             ---CSS----SCSSCBHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHH
T ss_pred             ---CcC----cccCCcchhHHHHH----------------------------------------HHHHHHhHHHHHHHHH
Confidence               000    13444444444433                                        5777776678888889


Q ss_pred             HHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454          440 RGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW  518 (603)
Q Consensus       440 r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~  518 (603)
                      +...++++|.+.|.+ ++        .++++++    .+++++.|...+.+     ...+.+.+.++||.++.+..    
T Consensus       349 ~~~~~~~~l~~~L~~~~~--------g~~~~~~----~~~~~v~~~~~~~~-----~~~l~~~L~~~Gi~v~~~~~----  407 (497)
T 3mc6_A          349 EIVGAAMKFKKYIQENIP--------DLDIMGN----PRYSVISFSSKTLN-----IHELSDRLSKKGWHFNALQK----  407 (497)
T ss_dssp             HHHHHHHHHHHHHHHSCT--------TCEECSC----CCSSEEEEECTTTT-----HHHHHHHHHTTTCBCEECCS----
T ss_pred             HHHHHHHHHHHHHHhcCC--------CEEEecC----CCeeEEEEeCCCCC-----HHHHHHHHHhCCEEEecCCC----
Confidence            999999999999998 43        2677765    36789999876533     34455555667998764311    


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                                         ...+|+++. .+|.+||+++++.|++.+..-
T Consensus       408 -----------------------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~  437 (497)
T 3mc6_A          408 -----------------------------------PVALHMAFT-RLSAHVVDEICDILRTTVQEL  437 (497)
T ss_dssp             -----------------------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHH
T ss_pred             -----------------------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHH
Confidence                                               125799998 789999999999999988653

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.80  E-value=2.1e-18  Score=180.78  Aligned_cols=334  Identities=8%  Similarity=-0.010  Sum_probs=198.1

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCc
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEND  189 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e  189 (603)
                      |+|+   .+++++.+++++.+.+...                   ..++          ....++.|++|++++|++  +
T Consensus         4 i~~~---~~~~~~~v~~a~~~~~~~~-------------------~~~~----------~~~~~~l~~~la~~~~~~--~   49 (375)
T 2fnu_A            4 FAYS---EPCLDKEDKKAVLEVLNSK-------------------QLTQ----------GKRSLLFEEALCEFLGVK--H   49 (375)
T ss_dssp             EESC---CCCCCHHHHHHHHHHHTSS-------------------CCSS----------SHHHHHHHHHHHHHHTCS--E
T ss_pred             cccC---CCCCCHHHHHHHHHHHHcC-------------------cccC----------ChHHHHHHHHHHHHhCCC--e
Confidence            5553   5788999999987653210                   0122          134678999999999986  6


Q ss_pred             EEEeccC-chHHH------------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          190 YVYDYES-EAVEA------------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       190 ~vf~~es-~sV~~------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ++++... +++..                        ....++..|+++..++++. ++.++.++|++.|..      ++
T Consensus        50 v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~------~~  122 (375)
T 2fnu_A           50 ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKN-DGNIDELALEKLINE------RT  122 (375)
T ss_dssp             EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCT-TSSBCGGGSGGGCCT------TE
T ss_pred             EEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCC-CCCCCHHHHHhhcCc------Cc
Confidence            6554221 12211                        2223445688888888874 557888888887752      57


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC--CCCCC-CcEEEEcccccCCCCCCceEEEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG--LSLVR-PDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld--ls~~~-~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      ++|++.+.   ||.+.|++.+ ++|+++|+++++|+++..+.  .+.+  +..++ +++.++|+||+||  | |+|++++
T Consensus       123 ~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~--~~~~~~~~~~~~i~~~s~s~~K~~~--~-g~g~~~~  194 (375)
T 2fnu_A          123 KAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGS--EYQNKKVGGFALASVFSFHAIKPIT--T-AEGGAVV  194 (375)
T ss_dssp             EEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTC--EETTEETTSSSSEEEEECCTTSSSC--C-SSCEEEE
T ss_pred             eEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCC--eECCeeccccCCeEEEeCCCCCCcc--c-cCceEEE
Confidence            88766654   9999999866 58999999999999998876  2323  33333 4444555569998  8 9999999


Q ss_pred             eC--CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh-hhhhhhhhhcCccccchhHH
Q 007454          321 KK--STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS-GPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       321 kk--~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~-gi~gl~~~~~~~~~~~~i~~  397 (603)
                      ++  ++.+.+++...+|...     ...|                  .  ++.++.++. ++..+.              
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~-----~~~~------------------~--~~~~~~~~~~~~~~~~--------------  235 (375)
T 2fnu_A          195 TNDSELHEKMKLFRSHGMLK-----KDFF------------------E--GEVKSIGHNFRLNEIQ--------------  235 (375)
T ss_dssp             ESCHHHHHHHHHHTBTTEEE-----SSSS------------------C--EEESSCCCBCCCCHHH--------------
T ss_pred             eCCHHHHHHHHHHHhcCCcc-----cccc------------------c--cccccccccCCCCHHH--------------
Confidence            63  3444444332233210     0000                  0  222332222 222221              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC-
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD-  476 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~-  476 (603)
                                                .++.+...-+++.+.++.+.++++|.+.|.+++        .++++++..... 
T Consensus       236 --------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~~~~~~  281 (375)
T 2fnu_A          236 --------------------------SALGLSQLKKAPFLMQKREEAALTYDRIFKDNP--------YFTPLHPLLKDKS  281 (375)
T ss_dssp             --------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCS--------SEEESGGGCSSCC
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CccccCCCCCCCc
Confidence                                      233332234678888999999999999998753        277877631111 


Q ss_pred             CCCEEEEEEccCCCCcc-CHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCC
Q 007454          477 RGPALAFNVFDWKREKI-EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGIT  555 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v-~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g  555 (603)
                      .+.++.+.+++. +  + +...+.+.+.++||.++.  .|.+......       +.......+   ....   .....+
T Consensus       282 ~~~~~~~~~~~~-~--~~~~~~l~~~L~~~gi~v~~--~~~p~~~~~~-------~~~~~~~~~---~~~~---~~~~~~  343 (375)
T 2fnu_A          282 SNHLYPILMHQK-F--FTCKKLILESLHKRGILAQV--HYKPIYQYQL-------YQQLFNTAP---LKSA---EDFYHA  343 (375)
T ss_dssp             CCSCEEEEECGG-G--GGGHHHHHHHHHHTTEECBC--CCCCGGGSHH-------HHHHHCCCC---CHHH---HHHHHH
T ss_pred             ceEEEEEEeCcc-c--cchHHHHHHHHHHCCCCccc--cccccccchh-------hhcCCCccC---ChHH---HHHHhC
Confidence            234455666531 1  1 234455555678999994  4543321111       000000000   0000   001125


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          556 VVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       556 ~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .||+|++.++|.+||+++++.|+++++.
T Consensus       344 ~lRi~~~~~~t~~~i~~~~~~l~~~~~~  371 (375)
T 2fnu_A          344 EISLPCHANLNLESVQNIAHSVLKTFES  371 (375)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999998765

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.80  E-value=8e-18  Score=175.35  Aligned_cols=304  Identities=11%  Similarity=0.056  Sum_probs=203.3

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.+.|+.+...+ .++.+++++.+.+...                   ...|          .....+.|++|++++|+
T Consensus        16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------~~y~----------~~~~~~l~~~la~~~~~   66 (354)
T 3ly1_A           16 DNPIRINFNENPLGMSPKAQAAARDAVVKA-------------------NRYA----------KNEILMLGNKLAAHHQV   66 (354)
T ss_dssp             SSCEECSSCCCSSCCCHHHHHHHHHTGGGT-------------------TSCC----------HHHHHHHHHHHHHHTTS
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHhhC-------------------cCCC----------CCchHHHHHHHHHHhCC
Confidence            5578888765553 6788888887643210                   0111          12456899999999999


Q ss_pred             CCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          186 SENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       186 ~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ++++++++...                      .+.......++..|+++..++.++ ++.++.++|++.|...    ++
T Consensus        67 ~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~----~~  141 (354)
T 3ly1_A           67 EAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAAY----SG  141 (354)
T ss_dssp             CGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHTC----SS
T ss_pred             ChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhccC----CC
Confidence            99999775321                      112223455667899999999874 6889999999999731    26


Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHh--CCcEEEEeccccCCCCCCC-----CC-CCCC-CCcEEEEcccccCCCCCC
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPKDMDS-----FG-LSLV-RPDFLICSFYQIFGENPS  313 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~~m~~-----ld-ls~~-~~Dflv~S~hK~fG~~P~  313 (603)
                      ++++.++..+|.||.++|.+.+ ++++.  +|+++++|.++..... ..     +. +... +.++++.|++|+||.+..
T Consensus       142 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~  220 (354)
T 3ly1_A          142 PSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVN-DPRFRSISPMITQGAENIILLKTFSKIHAMAGM  220 (354)
T ss_dssp             CEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCC-CTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG
T ss_pred             CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhcc-ccccCCHHHHhhhcCCCEEEEeeChhhccChhh
Confidence            8999999999999999999855 46665  8999999998764320 10     11 1223 567999999999983223


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      ++|++++++++.+.+...                                     ...+++|..+..++.          
T Consensus       221 r~G~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~----------  253 (354)
T 3ly1_A          221 RVGYAVAHPTVIALMGRY-------------------------------------VAGEKINFSGVDAAL----------  253 (354)
T ss_dssp             CCEEEECCHHHHHHHGGG-------------------------------------TTCSCCCHHHHHHHH----------
T ss_pred             hheeeecCHHHHHHHHHh-------------------------------------cCCCCCCHHHHHHHH----------
Confidence            378888765544333210                                     012344544443332          


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI  473 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~  473 (603)
                                                    ++++..  -.++.+.++.+.++++|.+.|.++      |   +.++.   
T Consensus       254 ------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~------~---~~~~~---  289 (354)
T 3ly1_A          254 ------------------------------ASMNDS--AFITYSKKSNDVSRQILLKALEDL------K---LPYLP---  289 (354)
T ss_dssp             ------------------------------HHTTCH--HHHHHHHHHHHHHHHHHHHHHHHH------T---CCBCC---
T ss_pred             ------------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHHC------C---CeECC---
Confidence                                          233321  135677888889999999999875      2   22332   


Q ss_pred             CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          474 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       474 ~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                        ..+..+.+.+++      +...+.+.+.++||.++ |.+|.                                    .
T Consensus       290 --~~~~~~~~~~~~------~~~~~~~~l~~~gi~v~-g~~~~------------------------------------~  324 (354)
T 3ly1_A          290 --SEGNFVFHQLVV------PLKDYQTHMADAGVLIG-RAFPP------------------------------------A  324 (354)
T ss_dssp             --CCSSEEEEECSS------CHHHHHHHHHHTTEECC-CCCTT------------------------------------C
T ss_pred             --CCceEEEEECCC------CHHHHHHHHHHCCEEEe-ecCCC------------------------------------C
Confidence              246778888765      23344444556899999 76542                                    1


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          554 ITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .+.||+|++   |.+||+++++.|++++.+.
T Consensus       325 ~~~iRis~~---~~~~i~~~~~~l~~~l~~~  352 (354)
T 3ly1_A          325 DNWCRISLG---TPQEMQWVADTMREFRKKS  352 (354)
T ss_dssp             TTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence            258999976   8999999999999988653

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.79  E-value=2.2e-18  Score=182.78  Aligned_cols=325  Identities=11%  Similarity=0.035  Sum_probs=208.2

Q ss_pred             eecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHH-HHHHHHHHHHHHHcCCCCCcE
Q 007454          112 LDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQES-GLESAMKKRIMDFLNISENDY  190 (603)
Q Consensus       112 LDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~-~~~~~aR~~Ia~~lna~~~e~  190 (603)
                      ..+++.+++++.+++++.+.+...                 +..+++.+....|.... .+.+.+|+++++++|++++++
T Consensus        27 ~~~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i   89 (407)
T 2dkj_A           27 ELIASENFVSKQVREAVGSVLTNK-----------------YAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANV   89 (407)
T ss_dssp             ECCTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEEC
T ss_pred             eeccCCCCCCHHHHHHHHhhhhcC-----------------cccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceE
Confidence            345666777999999987654210                 01133333322233332 344458999999999986656


Q ss_pred             EEeccCchHHHHHHHHHHcCCEEEEE------------------------ec--cCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          191 VYDYESEAVEAMIRTSEKRGARVMSA------------------------EF--SWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       191 vf~~es~sV~~~~~~a~~~Ga~V~~~------------------------~~--~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ++...+.++..++..+.+.|.+|...                        ++  +..++.++.++|++.|...     ++
T Consensus        90 ~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~-----~~  164 (407)
T 2dkj_A           90 QPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEH-----RP  164 (407)
T ss_dssp             CCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHH-----CC
T ss_pred             EecchHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhc-----CC
Confidence            55444444444444433344443322                        22  2114568899999999731     47


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCC---CCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLS---LVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls---~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      ++|.++..+|  |...|++.+ ++|+++|+++++|.++..|.  ...+..   .-.+|++++|+||++++ |.| |++++
T Consensus       165 ~~v~~~~p~~--~~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~di~~~s~sK~l~g-~~~-G~~~~  238 (407)
T 2dkj_A          165 KVIVAGASAY--PRFWDFKAFREIADEVGAYLVVDMAHFAGL--VAAGLHPNPLPYAHVVTSTTHKTLRG-PRG-GLILS  238 (407)
T ss_dssp             SEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHH--HHTTCSCCCTTTCSEEEEESSGGGCC-CSC-EEEEE
T ss_pred             eEEEEecccc--CCCCCHHHHHHHHHHcCCEEEEEccccccc--cccCccCCccccccEEEEeccccCCC-CCc-eEEEE
Confidence            8888854444  688999865 58999999999999987632  111111   01389999999998865 776 99999


Q ss_pred             e-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          321 K-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       321 k-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      + +++.+.+.+....                                  +..++++...++++.                
T Consensus       239 ~~~~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~a~~----------------  268 (407)
T 2dkj_A          239 NDPELGKRIDKLIFP----------------------------------GIQGGPLEHVIAGKA----------------  268 (407)
T ss_dssp             SCHHHHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH----------------
T ss_pred             CCHHHHHHHHhhhcc----------------------------------cccCCCcHHHHHHHH----------------
Confidence            8 4654434321000                                  124555665554433                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              ++++.+...+++.+.++.+.+.++|.+.|.++      |   ++++++.   ..++
T Consensus       269 ------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~  312 (407)
T 2dkj_A          269 ------------------------VAFFEALQPEFKEYSRLVVENAKRLAEELARR------G---YRIVTGG---TDNH  312 (407)
T ss_dssp             ------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CSSS
T ss_pred             ------------------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeecCC---CCce
Confidence                                    56776544467889999999999999999886      2   5666642   3688


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      ++.+.+++. +  ++...+.+.+.++||.++.|.....  ..                            .....+.+|+
T Consensus       313 ~~~~~~~~~-~--~~~~~~~~~l~~~gi~v~~~~~~~~--~~----------------------------~~~~~~~iRi  359 (407)
T 2dkj_A          313 LFLVDLRPK-G--LTGKEAEERLDAVGITVNKNAIPFD--PK----------------------------PPRVTSGIRI  359 (407)
T ss_dssp             EEEEECGGG-T--CCHHHHHHHHHHTTEECEECCCTTC--SS----------------------------CTTTCSEEEE
T ss_pred             EEEEECccc-C--CCHHHHHHHHHHcCceecCCcCccc--cc----------------------------cccCCCceee
Confidence            999988742 1  2344555656789999998753100  00                            0011258999


Q ss_pred             ecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454          560 SLGYL----ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       560 Slg~~----tt~eDVd~l~~~l~~~l~~  583 (603)
                      |++.+    .|.+|++++++.|+++++.
T Consensus       360 s~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          360 GTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             ECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             ecccccccCCCHHHHHHHHHHHHHHHhc
Confidence            99876    7999999999999999877

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.79  E-value=3.6e-18  Score=180.20  Aligned_cols=271  Identities=13%  Similarity=0.150  Sum_probs=189.6

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEecc--CCccccCHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFS--WPRLRINSE  228 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~--~~~g~i~~~  228 (603)
                      .+.|++|++++++++++++++... +++..                     ....++..|+++..++.+  ..++.++.+
T Consensus        64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~  143 (381)
T 1v2d_A           64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLS  143 (381)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHH
T ss_pred             HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHH
Confidence            479999999999998888775321 11111                     223456678999988876  235678999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCC---CCCCCCCCC--CCCCcE
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGP---KDMDSFGLS--LVRPDF  299 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~---~~m~~ldls--~~~~Df  299 (603)
                      +|++.|..      ++++|.++..+|.||.++|   ++.+ ++|+++|+++++|.++...   +  ...++.  ..+.|+
T Consensus       144 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~--~~~~~~~~~~~~~~  215 (381)
T 1v2d_A          144 ALEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE--RPRRLREFAPERTF  215 (381)
T ss_dssp             HHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS--CCCCHHHHCTTTEE
T ss_pred             HHHHhcCc------CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCC--CCCCHHHhcCCCEE
Confidence            99888752      6899999999999999998   4433 5789999999999998742   2  123333  357999


Q ss_pred             EEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          300 LICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       300 lv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++.|+||+||  +.|  +|++++++++++.+....                                .   ....+.+..
T Consensus       216 ~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~--------------------------------~---~~~~~~~~~  258 (381)
T 1v2d_A          216 TVGSAGKRLE--ATGYRVGWIVGPKEFMPRLAGMR--------------------------------Q---WTSFSAPTP  258 (381)
T ss_dssp             EEEEHHHHTT--CGGGCCEEEECCTTTHHHHHHHH--------------------------------H---HHTSSCCHH
T ss_pred             EEeechhhcC--CcccceEEEEeCHHHHHHHHHHH--------------------------------h---hcccCCCcH
Confidence            9999999999  558  899999877654332100                                0   112344444


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~-~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ...++.                                        .+++... .-+++.+.++.+.+.++|.+.|.++ 
T Consensus       259 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-  297 (381)
T 1v2d_A          259 LQAGVA----------------------------------------EALKLARREGFYEALREGYRRRRDLLAGGLRAM-  297 (381)
T ss_dssp             HHHHHH----------------------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHH----------------------------------------HHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            433322                                        4555432 2246788889999999999999874 


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                           |   +++++|.    .+..+.+.+++.     +   +.+++.++||.++.|..|...                  
T Consensus       298 -----g---~~~~~~~----~~~~~~~~~~~~-----~---~~~~l~~~gi~v~~g~~~~~~------------------  339 (381)
T 1v2d_A          298 -----G---LRVYVPE----GTYFLMAELPGW-----D---AFRLVEEARVALIPASAFYLE------------------  339 (381)
T ss_dssp             -----T---CCEECCS----BSSEEEEECTTC-----C---HHHHHHHTCEECEEGGGGCSS------------------
T ss_pred             -----C---CEecCCC----cceEEEEecChH-----h---HHHHHHhCCEEEecchHhCCC------------------
Confidence                 2   4555552    355777777653     1   667788899999988776431                  


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    ....+.||+|++.  +.+||+++++.|+++++.
T Consensus       340 --------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~  370 (381)
T 1v2d_A          340 --------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNS  370 (381)
T ss_dssp             --------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC--
T ss_pred             --------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence                          0123689999997  999999999999998765

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.79  E-value=1.4e-17  Score=184.14  Aligned_cols=283  Identities=13%  Similarity=0.075  Sum_probs=200.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCC--CcE--EEeccC-chHH-----------------------------HHHHHHHHcCCEE
Q 007454          168 ESGLESAMKKRIMDFLNISE--NDY--VYDYES-EAVE-----------------------------AMIRTSEKRGARV  213 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~--~e~--vf~~es-~sV~-----------------------------~~~~~a~~~Ga~V  213 (603)
                      ..++++++++.+++++|+++  +++  +|+... +++.                             .+...++..|+++
T Consensus       137 ~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v  216 (514)
T 3mad_A          137 TAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKL  216 (514)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCee
Confidence            34677788999999999975  565  654322 1211                             1223344558889


Q ss_pred             EEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC--------
Q 007454          214 MSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP--------  284 (603)
Q Consensus       214 ~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~--------  284 (603)
                      +.+++++ ++.++.++|+++|..      ++++|+++..+|.||.+.|++.| ++|+++|+++++|+++.+.        
T Consensus       217 ~~v~~~~-~~~~d~~~Le~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~  289 (514)
T 3mad_A          217 VRTPLDA-DYRADVAAMREAITP------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERL  289 (514)
T ss_dssp             EEECBCT-TSCBCHHHHHHHCCT------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHT
T ss_pred             EEeeeCC-CCCCCHHHHHHHhcc------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhc
Confidence            9999885 889999999999863      68999999999999999999966 5899999999999986532        


Q ss_pred             -CCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC----CCCCCCceeccccccccccccccCCCCCCc
Q 007454          285 -KDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV----DNTSSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       285 -~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~----p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                       +...+++....++|++++|+||+++. |.|+|++++++.......    +.+.+|..         .            
T Consensus       290 g~~~~~~~~~~~g~d~~~~s~~K~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------  347 (514)
T 3mad_A          290 GYPVPPFDFRLEGVTSVSADTHKYGYG-AKGTSVILYRRPDLLHYQYFIAADWPGGLY---------F------------  347 (514)
T ss_dssp             TCCCCCCSTTSTTCCEEEECTTTTTCC-CSSCEEEEESSHHHHTTTCEEESSCTTCSE---------E------------
T ss_pred             CCCCCcccccCCCCcEEEECchhccCC-CCCeEEEEEeCHHHhccccccccccCCCcc---------c------------
Confidence             21125777778999999999998544 889999999986543221    11111110         0            


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                           ..  ...|+.+...++++.                                        .+++.+...|++.+.+
T Consensus       348 -----~~--~~~gs~~~~~~~a~~----------------------------------------aal~~l~~~~~~~~~~  380 (514)
T 3mad_A          348 -----SP--TFAGSRPGALSATAW----------------------------------------AAMLSLGEEGYLDATR  380 (514)
T ss_dssp             -----ES--SSCSSCCHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHH
T ss_pred             -----CC--ccCCCCchHHHHHHH----------------------------------------HHHHHHhHHHHHHHHH
Confidence                 00  125676666665544                                        5777766668889999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccC
Q 007454          440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWF  519 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~  519 (603)
                      +.+.++++|.+.|.+++        .++++++.     .+++.|...+.+     ...+.+.+.++||.+ .|..|    
T Consensus       381 ~~~~~~~~l~~~L~~~~--------g~~~~~~~-----~~~~~~~~~~~~-----~~~l~~~L~~~Gi~v-~g~~~----  437 (514)
T 3mad_A          381 RILQAADRLKAGVRAIP--------SLKILGDP-----LWVIAVASDELN-----IYQVMEEMAGRGWRL-NGLHR----  437 (514)
T ss_dssp             HHHHHHHHHHHHHHTST--------TCEESSCC-----SSEEEEECSSSC-----HHHHHHHHHTTTCBC-EEETT----
T ss_pred             HHHHHHHHHHHHHhhCC--------CeEEeCCC-----eEEEEEeCCCCC-----HHHHHHHHHhcCCEe-ccCCC----
Confidence            99999999999999863        26777653     348888775433     334444445568876 22111    


Q ss_pred             CchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454          520 SDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       520 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~  583 (603)
                                                        .+.+|++++.. ++.+||+++++.|++.+.+
T Consensus       438 ----------------------------------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~  468 (514)
T 3mad_A          438 ----------------------------------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQ  468 (514)
T ss_dssp             ----------------------------------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence                                              14799999844 5679999999999998865

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.79  E-value=6.9e-18  Score=177.78  Aligned_cols=282  Identities=12%  Similarity=0.042  Sum_probs=187.4

Q ss_pred             HHHHHHHHHHHHHHcC--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc--
Q 007454          169 SGLESAMKKRIMDFLN--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR--  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~ln--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~--  222 (603)
                      .++.+++++.+++.+|  +++++++|+...                      .+.......++..|+++..+++++..  
T Consensus        65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  144 (391)
T 3dzz_A           65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSK  144 (391)
T ss_dssp             HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCc
Confidence            4667778888888888  678888775431                      12223344566778999988885322  


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG----PKDMDSFGLSL  294 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~  294 (603)
                      ..++.++|++.|..     +++++++++..+|.||.++|.+   .+ ++|+++|+++++|.++..    ++  ...++..
T Consensus       145 ~~~d~~~l~~~l~~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~  217 (391)
T 3dzz_A          145 YSVNWADLEEKLAT-----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFT  217 (391)
T ss_dssp             EECCHHHHHHHHTS-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGG
T ss_pred             eeecHHHHHHHHhc-----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--Cceehhh
Confidence            34899999999963     3689999999999999996654   33 468999999999999764    32  2344444


Q ss_pred             CC---Cc--EEEEcccccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454          295 VR---PD--FLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE  368 (603)
Q Consensus       295 ~~---~D--flv~S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  368 (603)
                      +.   +|  +++.|+||+||.+..++|+++++ +++.+.+....                                ..  
T Consensus       218 ~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~~--  263 (391)
T 3dzz_A          218 VDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF--------------------------------FL--  263 (391)
T ss_dssp             SCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH--------------------------------HH--
T ss_pred             cCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH--------------------------------Hh--
Confidence            43   67  99999999998322348999886 44433332100                                00  


Q ss_pred             cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454          369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L  448 (603)
                      ....++|..+..++.                                        ++++.... .++.+.++.+.+.++|
T Consensus       264 ~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l  302 (391)
T 3dzz_A          264 AGIGEPNLLAIPAAI----------------------------------------AAYEEGHD-WLRELKQVLRDNFAYA  302 (391)
T ss_dssp             HTCSSCCTTHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHH
T ss_pred             hccCCCCHHHHHHHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHHHH
Confidence            012234444443322                                        34443211 2677888889999999


Q ss_pred             HHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454          449 VNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       449 ~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~  526 (603)
                      .+.|.+ ++        .++++.|.    .+..+.+.++.. +  ++.. +.++|++++||.++.|..|...        
T Consensus       303 ~~~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~--------  359 (391)
T 3dzz_A          303 REFLAKEVP--------EVKVLDSN----ASYLAWVDISAL-G--MNAEDFCKYLREKTGLIISAGNGYRGN--------  359 (391)
T ss_dssp             HHHHHHHCT--------TSEECCCC----BSSEEEEECGGG-C--SCHHHHHHHHHHHHCEECEESGGGCTT--------
T ss_pred             HHHHHhhCC--------CcEEeccC----ceEEEEEehhhc-C--CCHHHHHHHHHHhCCEEEeCchhhCCC--------
Confidence            999987 53        25666653    244455666542 1  2233 4555557899999999776421        


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                +.+.+|+|++  ++.+||+++++.|++++++
T Consensus       360 --------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~  388 (391)
T 3dzz_A          360 --------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVLN  388 (391)
T ss_dssp             --------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred             --------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence                                      1268999999  7999999999999998754

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.79  E-value=1.4e-18  Score=183.46  Aligned_cols=317  Identities=13%  Similarity=0.136  Sum_probs=199.6

Q ss_pred             CCceeeecCCCC----CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG----LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~t----l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      ++..|+|.++..    +.++.+++++.+.+...                  ..++..+.+.+|  ......+.|++|+++
T Consensus        37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~------------------~~~~~~~~~~~g--~~~~~~~l~~~la~~   96 (384)
T 1bs0_A           37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF------------------GIGSGGSGHVSG--YSVVHQALEEELAEW   96 (384)
T ss_dssp             TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH------------------CSCCCSBTTTTC--CCHHHHHHHHHHHHH
T ss_pred             CCceEEEeeccCccCCCCCHHHHHHHHHHHHHh------------------CCCCCCcCcccC--ChHHHHHHHHHHHHH
Confidence            356799998854    35778888876543210                  001111222222  125667899999999


Q ss_pred             cCCCCCcEEEeccCchHHHHHH---------------------HHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCC
Q 007454          183 LNISENDYVYDYESEAVEAMIR---------------------TSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKK  241 (603)
Q Consensus       183 lna~~~e~vf~~es~sV~~~~~---------------------~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~  241 (603)
                      +|++ +.+++...++++..++.                     .++..|+++..++.      ++.++|++.|...   +
T Consensus        97 ~g~~-~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l~~~l~~~---~  166 (384)
T 1bs0_A           97 LGYS-RALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH------NDVTHLARLLASP---C  166 (384)
T ss_dssp             HTCS-EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSC---C
T ss_pred             hCCC-cEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC------CCHHHHHHHHHhc---C
Confidence            9985 44444333333332222                     23344666555542      4788999998742   1


Q ss_pred             CCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCC-CCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          242 KQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDS-FGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       242 ~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~-ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                      +++++++++..+|.||.++|++.+ ++|+++|+++++|.++..+.   +..+ .+.-..++|+++.|+||+||  |.| |
T Consensus       167 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~--~~G-G  243 (384)
T 1bs0_A          167 PGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFG--VSG-A  243 (384)
T ss_dssp             SSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTS--SCC-E
T ss_pred             CCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhh--ccC-c
Confidence            247899999999999999999855 58999999999999986543   0001 11111368999999999999  778 9


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      ++++++++++.+.+.   +         ..|                     .-.++.|.....++.             
T Consensus       244 ~~~~~~~~~~~l~~~---~---------~~~---------------------~~~~~~~~~~~~~~~-------------  277 (384)
T 1bs0_A          244 AVLCSSTVADYLLQF---A---------RHL---------------------IYSTSMPPAQAQALR-------------  277 (384)
T ss_dssp             EEEECHHHHHHHHHH---C---------HHH---------------------HSSBCCCHHHHHHHH-------------
T ss_pred             EEEeCHHHHHHHHHh---c---------hhh---------------------hcCCCCCHHHHHHHH-------------
Confidence            999987665433310   0         000                     001134444433322             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 ++++.+.+..++.+.++.+.+.++|.+.|.++      |   ++++.     .
T Consensus       278 ---------------------------~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~-----~  316 (384)
T 1bs0_A          278 ---------------------------ASLAVIRSDEGDARREKLAALITRFRAGVQDL------P---FTLAD-----S  316 (384)
T ss_dssp             ---------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS------S---CEECS-----C
T ss_pred             ---------------------------HHHHHHhccccHHHHHHHHHHHHHHHHHHHhc------C---CcccC-----C
Confidence                                       46666543234678888999999999999875      2   45542     2


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      .++++.+.+++.    +....+.+.+.++||.++.|.....                                 ....+.
T Consensus       317 ~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~~~~~~---------------------------------~~~~~~  359 (384)
T 1bs0_A          317 CSAIQPLIVGDN----SRALQLAEKLRQQGCWVTAIRPPTV---------------------------------PAGTAR  359 (384)
T ss_dssp             CSSBCCEEEESH----HHHHHHHHHHHHTTEECCEECTTSS---------------------------------CTTCEE
T ss_pred             CCCEEEEEeCCH----HHHHHHHHHHHHCCcEEEeecCCCC---------------------------------CCCCce
Confidence            467777777531    1223343333456999987643210                                 012368


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      ||+|++.++|.+||+++++.|+++
T Consensus       360 ~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          360 LRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             ECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHhh
Confidence            999999999999999999999865

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.78  E-value=1.4e-17  Score=176.68  Aligned_cols=296  Identities=13%  Similarity=0.063  Sum_probs=183.1

Q ss_pred             cccchHHHHHHHHHHHHHHHcCCCCCcEEEeccCchHHH-------------------------HHHHHHHcCCEEEEEe
Q 007454          163 LHGGQESGLESAMKKRIMDFLNISENDYVYDYESEAVEA-------------------------MIRTSEKRGARVMSAE  217 (603)
Q Consensus       163 ~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~-------------------------~~~~a~~~Ga~V~~~~  217 (603)
                      .++........+.|++|++++|++ +.++|...++++..                         +...++..|+++..++
T Consensus        45 ~~~~~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~  123 (386)
T 1cs1_A           45 DYSRRGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD  123 (386)
T ss_dssp             SBTTTCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             ceeCCCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence            344444566789999999999987 56655322222222                         2223345566666665


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR  296 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~  296 (603)
                      .+      +.++|++.|..      ++++|.+...+|.||.++|++.+ ++|+++|+++++|.++..+.  ....+ .++
T Consensus       124 ~~------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~-~~~  188 (386)
T 1cs1_A          124 QG------DEQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPA--LQNPL-ALG  188 (386)
T ss_dssp             TT------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTT--TCCGG-GGT
T ss_pred             CC------CHHHHHHhhcc------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccc--cCCcc-ccC
Confidence            42      68899999873      58999999999999999999966 58999999999999998886  23333 468


Q ss_pred             CcEEEEcccccCCCCCCce--EEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          297 PDFLICSFYQIFGENPSGF--GCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~--G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      +|++++|+||+||. |.|.  |++++++ ++++.+.+...+                                   -.++
T Consensus       189 ~di~~~s~sK~~~~-~~~~~~G~~~~~~~~l~~~l~~~~~~-----------------------------------~~~~  232 (386)
T 1cs1_A          189 ADLVLHSCTKYLNG-HSDVVAGVVIAKDPDVVTELAWWANN-----------------------------------IGVT  232 (386)
T ss_dssp             CSEEEEETTTTTTC-SSCCCCEEEEESSHHHHHHHHHHHHH-----------------------------------HTCB
T ss_pred             ceEEEEcCcccccC-CCCceeEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCC
Confidence            99999999999986 7664  9999986 554434321100                                   0122


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .+..+.+...                                        ++++.     +....++......++.+.|.
T Consensus       233 ~~~~~~~~~~----------------------------------------~~l~~-----~~~~~~~~~~~~~~l~~~l~  267 (386)
T 1cs1_A          233 GGAFDSYLLL----------------------------------------RGLRT-----LVPRMELAQRNAQAIVKYLQ  267 (386)
T ss_dssp             CCHHHHHHHH----------------------------------------HHHTT-----HHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHH----------------------------------------hcccH-----HHHHHHHHHHHHHHHHHHHh
Confidence            2322221111                                        23322     22233334444556666666


Q ss_pred             cCCC------CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe---eC------cccCcc
Q 007454          454 KLQH------PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS---YG------SLHHIW  518 (603)
Q Consensus       454 ~L~h------~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr---~G------~~C~~~  518 (603)
                      +++.      +.-...|.++++++.. ..++++++|.+.+.      .+.+.+++++.||.++   .|      ++|...
T Consensus       268 ~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~  340 (386)
T 1cs1_A          268 TQPLVKKLYHPSLPENQGHEIAARQQ-KGFGAMLSFELDGD------EQTLRRFLGGLSLFTLAESLGGVESLISHAATM  340 (386)
T ss_dssp             TCTTEEEEECTTSTTSTTHHHHHHHC-SSCCSEEEEEESSC------HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGT
T ss_pred             cCCCeEEEECCCCCCCccHHHHHHhc-CCCceEEEEEECCC------HHHHHHHHHhCCcceEcccCCCcceeeeccccc
Confidence            5421      0000011122222211 23589999998752      3457777788999998   46      556543


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      .+...   ..+++..++                ...+.||+|++..++.++|++|.++|+++.
T Consensus       341 ~~~~~---~~~~~~~~g----------------~~~~~iRis~~~~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          341 THAGM---APEARAAAG----------------ISETLLRISTGIEDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             TTTTS---CHHHHHHHT----------------CCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             ccccC---CHHHHHhcC----------------CCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            21110   012222221                123799999999999999999999998764

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.78  E-value=2e-17  Score=181.24  Aligned_cols=330  Identities=11%  Similarity=0.020  Sum_probs=202.9

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      ..+||+ ..++...+.+++++.+.+..                     .||......+.-..++++++++.+++++|++.
T Consensus        67 ~~~~lg-~~~~~~~p~v~~~~~~~~~~---------------------~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~  124 (474)
T 1wyu_B           67 TFYPLG-SCTMKYNPKLHEEAARLFAD---------------------LHPYQDPRTAQGALRLMWELGEYLKALTGMDA  124 (474)
T ss_dssp             SCCCBT-TTCCCCCCHHHHHHHHTTSS---------------------CCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE
T ss_pred             Cccccc-cccccCCHHHHHHHHHHHHh---------------------cCCCCchhhChHHHHHHHHHHHHHHHHHCCCc
Confidence            468898 55666667777776653211                     12211110112245778888899999988864


Q ss_pred             CcEEEecc-CchHHH----H--------------------------HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhh
Q 007454          188 NDYVYDYE-SEAVEA----M--------------------------IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVS  236 (603)
Q Consensus       188 ~e~vf~~e-s~sV~~----~--------------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~  236 (603)
                       .++|+.. ++++..    +                          ...++..|++|+.++++ +++.++.++|+++|..
T Consensus       125 -~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~-~~~~~d~~~L~~~i~~  202 (474)
T 1wyu_B          125 -ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSG-PEGEVDLEALKRELGP  202 (474)
T ss_dssp             -EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBC-TTSSBCHHHHHHHCST
T ss_pred             -eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCC-CCCCcCHHHHHHhhCC
Confidence             2333321 112111    1                          12234457788888887 4788999999999863


Q ss_pred             cCCCCCCeeEEEEeCcccccccc-ccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC-
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGAR-YPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS-  313 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~-~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~-  313 (603)
                            +|++|++... |.||.+ .|++.| ++|+++|+++++|+++..+. +..++...+++|++++|+||+||. |. 
T Consensus       203 ------~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~-~g~~~~~~~g~di~~~s~~K~~~~-p~g  273 (474)
T 1wyu_B          203 ------HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAI-MGWARPGDMGFDVVHLNLHKTFTV-PHG  273 (474)
T ss_dssp             ------TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT-TTTCCHHHHTCSEEECCTTTTTCC-CCT
T ss_pred             ------CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhh-ccCCCcccCCCcEEEEeCcccccc-CCC
Confidence                  5899999885 679998 699866 58999999999999997665 123444556899999999999886 75 


Q ss_pred             ----ceEEEEEeCCCCcCcCCCCCC--CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhc
Q 007454          314 ----GFGCLFVKKSTVPILVDNTSS--GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQS  387 (603)
Q Consensus       314 ----G~G~L~vkk~~~~~L~p~~~g--G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~  387 (603)
                          |+|+++++++.++.+...+.|  |. .+...    + .+.      .    ..++  ++.++.|..+.   .    
T Consensus       274 ~gG~~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~~----~-~~~------~----~~~~--~~~~~~~~~~~---~----  328 (474)
T 1wyu_B          274 GGGPGSGPVGVKAHLAPYLPVPLVERGEE-GFYLD----F-DRP------K----SIGR--VRSFYGNFLAL---V----  328 (474)
T ss_dssp             TSCCCCCCEEECGGGGGGCCSCEEEECSS-CEEEE----C-CCT------T----CCCC--SSSTTSCHHHH---H----
T ss_pred             CCCCCeEEEEEcHHHHHhCCCCeeeccCC-eeEec----c-cCc------c----cCcc--cccCcCcHHHH---H----
Confidence                699999999887666533332  21 00000    0 000      0    0012  34555554322   1    


Q ss_pred             CccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          388 GKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL---GLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       388 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i---Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                          +++..+..+   ++....++.+.++++|.+.|.++      |  
T Consensus       329 ------------------------------------aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~------g--  364 (474)
T 1wyu_B          329 ------------------------------------RAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK------G--  364 (474)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred             ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------C--
Confidence                                                244444333   45666888889999999999875      2  


Q ss_pred             eEEE-eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccc
Q 007454          465 LVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD  543 (603)
Q Consensus       465 lv~I-ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~  543 (603)
                       +++ +++.  .-+..++.|  .  .+  ++...+.+.+.++||.+....+                             
T Consensus       365 -~~~~~~~~--~~~~~~~~~--~--~~--~~~~~l~~~L~~~Gi~~~~~~~-----------------------------  406 (474)
T 1wyu_B          365 -YRVPYDGP--SMHEFVAQP--P--EG--FRALDLAKGLLELGFHPPTVYF-----------------------------  406 (474)
T ss_dssp             -CBCSSCSS--CCSCEEEBC--S--TT--CCHHHHHHHHHHTTCCCCEESC-----------------------------
T ss_pred             -cEecCCCC--cceEEEEEc--C--CC--CCHHHHHHHHHHCCcccccccc-----------------------------
Confidence             222 2221  112233333  1  11  2344444444456987521100                             


Q ss_pred             cccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          544 NNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       544 ~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                            .....+.+|+|++.++|.+||+++++.|++++++
T Consensus       407 ------~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~  440 (474)
T 1wyu_B          407 ------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  440 (474)
T ss_dssp             ------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             ------ccccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence                  0011368999999999999999999999998865

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.78  E-value=1.6e-17  Score=171.58  Aligned_cols=296  Identities=14%  Similarity=0.149  Sum_probs=196.0

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.|+||.+... ++++.+++++.+.....                          ..|.   .....+.|++|++++|+
T Consensus        16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--------------------------~~y~---~~~~~~lr~~la~~~~~   66 (337)
T 3p1t_A           16 AQAVCLAFNENPEAVEPRVQAAIAAAAARI--------------------------NRYP---FDAEPRVMRKLAEHFSC   66 (337)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHGGGT--------------------------TSCC---TTHHHHHHHHHHHHHTS
T ss_pred             CCceEeeCCCCCCCCCHHHHHHHHHhhhhh--------------------------ccCC---CCchHHHHHHHHHHhCc
Confidence            457999998655 46788888876542210                          0011   12356899999999999


Q ss_pred             CCCcEEEeccCc--------------------hHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          186 SENDYVYDYESE--------------------AVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       186 ~~~e~vf~~es~--------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                      ++++++++....                    +.......++..|+++..+++++ ++.++.++|++.        .+++
T Consensus        67 ~~~~i~~t~G~~~~l~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~--------~~~~  137 (337)
T 3p1t_A           67 PEDNLMLVRGIDECFDRISAEFSSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD-DLLLDPNDLAQV--------SRDD  137 (337)
T ss_dssp             CGGGEEEESHHHHHHHHHHHHSTTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT-TSSBCHHHHTTC--------CTTE
T ss_pred             CHHHEEEeCCHHHHHHHHHHhcCCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHhh--------cCCC
Confidence            999998864321                    12223345566799999998874 678898888764        2478


Q ss_pred             EEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc--CCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          246 LFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL--GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~--~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +++++..+|.||.++|++.+ ++++++++ +++|.++.  .+.  ....+...+.|+++.|++|+||.+..++|++++++
T Consensus       138 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~--~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~  214 (337)
T 3p1t_A          138 CVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSF--RARGLAYGENELVFRSFSKSYGLAGLRLGALFGPS  214 (337)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSC--SSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCH
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccc--cccccccCCCEEEEeeCchhccCcchheEEEEeCH
Confidence            99999999999999999965 58899998 55688754  333  23334445678999999999983233458888766


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      +.++.+...                                     ...++.+..+..++.                   
T Consensus       215 ~~~~~l~~~-------------------------------------~~~~~~~~~~~~a~~-------------------  238 (337)
T 3p1t_A          215 ELIAAMKRK-------------------------------------QWFCNVGTLDLHALE-------------------  238 (337)
T ss_dssp             HHHHHHHTT-------------------------------------SCTTCSCHHHHHHHH-------------------
T ss_pred             HHHHHHHhh-------------------------------------cCCCCCCHHHHHHHH-------------------
Confidence            554333211                                     012334444433322                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           .+++...  .+....++.+..+++|.+.|.++      |   ++++.|     .++.+.
T Consensus       239 ---------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~-----~~~~~~  281 (337)
T 3p1t_A          239 ---------------------AALDNDR--AREAHIAKTLAQRRRVADALRGL------G---YRVASS-----EANFVL  281 (337)
T ss_dssp             ---------------------HHHTCHH--HHHHHHHHHHHHHHHHHHHHHHT------T---CCBCCC-----SSSEEE
T ss_pred             ---------------------HHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC------c---CEECCC-----CCeEEE
Confidence                                 2332211  13455556667788888899875      2   333333     356777


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      |.+.+  +     ..+.+++.++||.++.|..|..                                    .+.||+|++
T Consensus       282 ~~~~~--~-----~~~~~~l~~~gi~v~~g~~~~~------------------------------------~~~iRis~~  318 (337)
T 3p1t_A          282 VENAA--G-----ERTLRFLRERGIQVKDAGQFGL------------------------------------HHHIRISIG  318 (337)
T ss_dssp             EECTT--T-----HHHHHHHHHTTEECEEGGGGTC------------------------------------CSEEEEECC
T ss_pred             EEcCC--H-----HHHHHHHHHCCeEEEECccCCC------------------------------------CCeEEEecC
Confidence            66543  2     3456667788999998866521                                    158999988


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 007454          563 YLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       563 ~~tt~eDVd~l~~~l~~~l~  582 (603)
                         +.+|+++|+++|++++.
T Consensus       319 ---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          319 ---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             ---CHHHHHHHHHHHHHHTC
T ss_pred             ---CHHHHHHHHHHHHHHhh
Confidence               79999999999998764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.78  E-value=1.8e-18  Score=182.15  Aligned_cols=298  Identities=13%  Similarity=0.082  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ...++.|++|++++|++  +.+|... ++++                      ......++..|+++..++++..++.++
T Consensus        36 ~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  113 (373)
T 3frk_A           36 DEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRTYNID  113 (373)
T ss_dssp             HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTTTEEC
T ss_pred             chHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccccCcC
Confidence            45678999999999985  5544311 1111                      112334556799999998875567889


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS  303 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S  303 (603)
                      .++|+++|..      ++++|+   .+|+||...|++.+ ++|+++|+++++|++|..|.   .++...++  +|++++|
T Consensus       114 ~~~l~~~l~~------~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~---~~~~~~~~~~~d~~~~S  181 (373)
T 3frk_A          114 PSLIESAITE------KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGS---LYKGMKVGSLGDAAGFS  181 (373)
T ss_dssp             GGGTGGGCCT------TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTC---EETTEETTSSSSEEEEE
T ss_pred             HHHHHHhcCC------CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCC---EECCEeccccccEEEEe
Confidence            9999888753      578777   57899999999966 58999999999999999886   25555555  8999999


Q ss_pred             cc--ccCCCCCCceEEEEE-eCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          304 FY--QIFGENPSGFGCLFV-KKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       304 ~h--K~fG~~P~G~G~L~v-kk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      |+  |++|  |.|.|++++ ++. ..+.+++...+|...      . +          .       .  .+.|.. + .+
T Consensus       182 ~~~~K~l~--~~g~gg~~~~~~~~~~~~~~~~~~~g~~~------~-~----------~-------~--~~~g~~-~-~~  231 (373)
T 3frk_A          182 FYPAKNLG--SLGDGGAVVTNDKDLAEKIKALSNYGSEK------K-Y----------H-------H--IYKGFN-S-RL  231 (373)
T ss_dssp             CCTTSSSC--CSSSCEEEEESCHHHHHHHHHHHBTTCSB------T-T----------B-------C--CSCCCB-C-CC
T ss_pred             CcCCCccC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------C-C----------c-------c--cccccc-C-CC
Confidence            55  9999  545454444 433 333334322223210      0 0          0       0  122321 1 11


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      .++.                                        +++......+++.+.++.+.+.+++.+.|.++    
T Consensus       232 ~~~~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----  267 (373)
T 3frk_A          232 DELQ----------------------------------------AGFLRVKLKYLDKWNEERRKIAQKYIAGINNP----  267 (373)
T ss_dssp             CHHH----------------------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT----
T ss_pred             CHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----
Confidence            1222                                        34444433467888899999999999998765    


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc----ccCccCCchhhhhhHHHHHhhh
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~----~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                          + +++.++.. ......+.|.+...+     ...+.+.+.++||.++.++    +|.+.....            .
T Consensus       268 ----~-~~~~~~~~-~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~------------~  324 (373)
T 3frk_A          268 ----N-VIIPVEAD-YAKHVWYTFVIRSEK-----RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDL------------G  324 (373)
T ss_dssp             ----T-EECCCCCT-TEECCCSSEEEEESS-----HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGG------------C
T ss_pred             ----c-eEeccCCC-CCceeeEEEEEEeCC-----HHHHHHHHHHCCCCcccCcCCccccChHHHhc------------C
Confidence                3 55543321 123444556655432     3456666667799999765    343321110            0


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                       +... .....   .....+.||+|++.++|.+||+++++.|++..++
T Consensus       325 -~~~~-~~~~~---~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          325 -FKTG-NFPIA---EKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             -CCTT-SSHHH---HHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             -CCCC-CCHHH---HHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence             0000 00000   0111268999999999999999999999877544

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.77  E-value=1.3e-17  Score=174.85  Aligned_cols=305  Identities=10%  Similarity=0.049  Sum_probs=200.7

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.++|+.+...+ .++.+++++.+.+...                        ....|+.   ....+.|++|++++|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~---~~~~~l~~~la~~~g~   82 (367)
T 3euc_A           30 HGLVKLDAMENPYRLPPALRSELAARLGEV------------------------ALNRYPV---PSSEALRAKLKEVMQV   82 (367)
T ss_dssp             TTCEECCSSCCCCCCCHHHHHHHHHHHHHH------------------------HTTCSCC---CCHHHHHHHHHHHHTC
T ss_pred             CCeeEccCCCCCCCCCHHHHHHHHHHhhhh------------------------hhhcCCC---CcHHHHHHHHHHHhCC
Confidence            4568888776543 5778888876543210                        0000111   0135899999999999


Q ss_pred             -CCCcEEEeccC-chHHHH---------------------HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          186 -SENDYVYDYES-EAVEAM---------------------IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       186 -~~~e~vf~~es-~sV~~~---------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                       ++++++|+... +++..+                     ...++..|+++..+++++ ++.++.++|++.|...     
T Consensus        83 ~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-----  156 (367)
T 3euc_A           83 PAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA-DFTLDRGAMLAAMAEH-----  156 (367)
T ss_dssp             CTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT-TSCCCHHHHHHHHHHH-----
T ss_pred             CCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC-CCCCCHHHHHHHhhcc-----
Confidence             67788775322 122211                     233556788999999874 7789999999999752     


Q ss_pred             CeeEEEEeCccccccccccHHHH----HHHHhC--CcEEEEeccccCC--CCCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM----RIAQEN--DWHILIDACALGP--KDMDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~--g~~vlvDAaq~~~--~~m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                      ++++|.+++.+|.||.++|.+.+    ++|+++  |+++++|.++..-  .. ..-.+...+.++++.|++|+ |.+..+
T Consensus       157 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~-~~~G~r  234 (367)
T 3euc_A          157 QPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQES-WMSRLTDFGNLLVMRTVSKL-GLAGIR  234 (367)
T ss_dssp             CCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCC-SGGGGGTCTTEEEEEECCCT-TSCSCC
T ss_pred             CCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccc-hHHHHhhCCCEEEEecchhh-cccccC
Confidence            57899999999999999987633    357889  9999999986521  11 01123445677999999999 632234


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                      +|+++++++.++.+...                                     ....+.|..+..++.           
T Consensus       235 ~G~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~-----------  266 (367)
T 3euc_A          235 LGYVAGDPQWLEQLDKV-------------------------------------RPPYNVNVLTEATAL-----------  266 (367)
T ss_dssp             EEEEEECHHHHHHHGGG-------------------------------------CCSSCCCHHHHHHHH-----------
T ss_pred             ceeeeeCHHHHHHHHHh-------------------------------------CCCCCCCHHHHHHHH-----------
Confidence            78888876554333210                                     011233444433322           


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR  474 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~  474 (603)
                                                   .+++..  -.++...++.+.++++|.+.|.+++     |   ++++.+   
T Consensus       267 -----------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~-----g---~~~~~~---  304 (367)
T 3euc_A          267 -----------------------------FALEHV--AVLDEQAAQLRAERSRVAEGMAAHG-----G---VTVFPS---  304 (367)
T ss_dssp             -----------------------------HHHTTH--HHHHHHHHHHHHHHHHHHHHHHTST-----T---CEECCC---
T ss_pred             -----------------------------HHhcCH--HHHHHHHHHHHHHHHHHHHHHHhCC-----C---cEECCC---
Confidence                                         344431  1357778889999999999998763     2   555432   


Q ss_pred             CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                        .+..+.+.++       +...+.+.+.++||.++.|..|..                                  ...
T Consensus       305 --~~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~----------------------------------~~~  341 (367)
T 3euc_A          305 --AANFLLARVP-------DAAQTFDRLLARKVLIKNVSKMHP----------------------------------LLA  341 (367)
T ss_dssp             --SSSEEEEECS-------CHHHHHHHHHTTTEECEECGGGCG----------------------------------GGT
T ss_pred             --CCeEEEEECC-------CHHHHHHHHHHCCeEEEECCccCC----------------------------------CCC
Confidence              4667777775       233455556778999998877631                                  112


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          555 TVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       555 g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      +.||+|++   |.+|++++++.|++++.
T Consensus       342 ~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          342 NCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             TEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            69999987   99999999999998764

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.77  E-value=4.1e-17  Score=171.82  Aligned_cols=324  Identities=9%  Similarity=0.070  Sum_probs=208.7

Q ss_pred             HHHHHHhhccCcCCCCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHH
Q 007454           93 IDQIRAKEYYQLSLSNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGL  171 (603)
Q Consensus        93 vd~iR~~efp~L~~~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~  171 (603)
                      .|...+ +|..   .+.+.|..+... +.++.+++++.+.+...                         .+.|+....++
T Consensus        22 ~d~~~~-~~~~---~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~y~~~~~~~   72 (391)
T 4dq6_A           22 WSEMEK-KYGT---NDLLPMWVADMDFKAAPCIIDSLKNRLEQE-------------------------IYGYTTRPDSY   72 (391)
T ss_dssp             HHCHHH-HHSC---SCSEECCSSSCSSCCCHHHHHHHHHHHTTC-------------------------CCCCBCCCHHH
T ss_pred             eeeccc-ccCC---CCceeccccCCCCCCCHHHHHHHHHHHhCC-------------------------CCCCCCCCHHH
Confidence            344443 4641   456888877655 45688888877643210                         00011112467


Q ss_pred             HHHHHHHHHHHcC--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEecc-CCcc--c
Q 007454          172 ESAMKKRIMDFLN--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFS-WPRL--R  224 (603)
Q Consensus       172 ~~~aR~~Ia~~ln--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~-~~~g--~  224 (603)
                      .+++++.+++++|  +++++++++...                      .+.......++..|+++..++++ |..+  .
T Consensus        73 ~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  152 (391)
T 4dq6_A           73 NESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYI  152 (391)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEE
T ss_pred             HHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceE
Confidence            7889999999999  778888775321                      11222334556779999998887 4333  5


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALG----PKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~  296 (603)
                      ++.++|++.|.      + ++++++++.+|.||.++|.+.   + ++|+++|+++++|.++..    ++  ...++..+.
T Consensus       153 ~d~~~l~~~l~------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~  223 (391)
T 4dq6_A          153 MDYEDIENKIK------D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASIS  223 (391)
T ss_dssp             CCHHHHHHHCT------T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSC
T ss_pred             eeHHHHHHHhh------c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcC
Confidence            89999999885      2 899999999999999977643   3 368999999999999875    33  234444454


Q ss_pred             Cc-----EEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454          297 PD-----FLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE  368 (603)
Q Consensus       297 ~D-----flv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  368 (603)
                      +|     +++.|++|+||  +.|  +|++++++ .+.+.+....                                ..  
T Consensus       224 ~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~~--  267 (391)
T 4dq6_A          224 KEFEKNTITCMAPTKTFN--IAGLQSSYVVLPDEKDYKLLDDAF--------------------------------TR--  267 (391)
T ss_dssp             HHHHHTEEEEECSHHHHT--CGGGCCEEEECCSHHHHHHHHHHH--------------------------------HH--
T ss_pred             ccccCcEEEEEechhhcc--CcccceEEEEeCCHHHHHHHHHHH--------------------------------Hh--
Confidence            44     89999999998  335  78887765 4433222100                                00  


Q ss_pred             cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454          369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L  448 (603)
                      ...+++|..+..++.                                        ++++.... .++.+.++.+.+.++|
T Consensus       268 ~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l  306 (391)
T 4dq6_A          268 IDIKRNNCFSLVATE----------------------------------------ASYNNGES-WLESFLEYLESNIDFA  306 (391)
T ss_dssp             TTCCCCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHH----------------------------------------HHHhchHH-HHHHHHHHHHHHHHHH
Confidence            123345555544332                                        34443211 2677788889999999


Q ss_pred             HHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhh
Q 007454          449 VNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKE  526 (603)
Q Consensus       449 ~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~  526 (603)
                      .+.|.+ ++        .++++.|.    .+.++.+.++...   ++.. +.++|.+++||.++.|..|..         
T Consensus       307 ~~~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~---------  362 (391)
T 4dq6_A          307 IKYINENMP--------KLKVRKPE----GTYLLWVDFSALG---LSDEELESILVQKGKVALNQGNSFGI---------  362 (391)
T ss_dssp             HHHHHHHCT--------TSEECCCS----BSSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCT---------
T ss_pred             HHHHHhhCC--------CCEecCCC----ccEEEEEEhhhcC---CCHHHHHHHHHHhCCEEeeCchhhCC---------
Confidence            999987 42        25666553    2334446776421   2233 455565555999999876632         


Q ss_pred             hHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          527 KDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       527 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                               .+.+.+|+|++  ++.|||+++++.|++.++
T Consensus       363 -------------------------~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          363 -------------------------GGSGYQRINLA--CPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             -------------------------TCTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             -------------------------CCCCeEEEEEc--CCHHHHHHHHHHHHHHhC
Confidence                                     11368999999  799999999999988763

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.76  E-value=3.4e-17  Score=173.78  Aligned_cols=274  Identities=13%  Similarity=0.119  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      +..+++++.+++++|+  ++++++... +++                     ......++..|+++..++.      ++.
T Consensus        88 ~~~~~l~~~la~~~g~--~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~------~d~  159 (398)
T 3a2b_A           88 DIHVELEEKLSAYVGK--EAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH------NNM  159 (398)
T ss_dssp             HHHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT------TCH
T ss_pred             HHHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC------CCH
Confidence            5678899999999997  466664321 122                     2223344556777776654      478


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC-CCCCCCC-CCC----CCcEE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK-DMDSFGL-SLV----RPDFL  300 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~-~m~~ldl-s~~----~~Dfl  300 (603)
                      ++|++.|...+  ..++++|.++..+|.||.++|++.+ ++|+++|+++++|.++..+. +-...++ +.+    ++|++
T Consensus       160 ~~l~~~l~~~~--~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~  237 (398)
T 3a2b_A          160 EDLRAKLSRLP--EDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLI  237 (398)
T ss_dssp             HHHHHHHHTSC--SSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEE
T ss_pred             HHHHHHHHhhc--cCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEE
Confidence            99999987421  1158899999999999999999865 58999999999999986442 0011222 111    47999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      +.|+||+||  |.| |++++++++++.+.+..           .. +                     ...++++....+
T Consensus       238 ~~s~sK~~~--~~G-G~~~~~~~~~~~l~~~~-----------~~-~---------------------~~~~~~~~~~~a  281 (398)
T 3a2b_A          238 MGTFSKSLA--SLG-GFVAGDADVIDFLKHNA-----------RS-V---------------------MFSASMTPASVA  281 (398)
T ss_dssp             EEESSSTTC--SSC-EEEEECHHHHHHHHHHC-----------HH-H---------------------HSSBCCCHHHHH
T ss_pred             Eeccccccc--CCC-cEEEeCHHHHHHHHHhc-----------cc-c---------------------eecCCCCHHHHH
Confidence            999999999  788 99999876654333200           00 0                     112333444332


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      ++.                                        .+++..+.  ++.+.++.+.+.++|.+.|.++     
T Consensus       282 ~~~----------------------------------------~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~-----  314 (398)
T 3a2b_A          282 STL----------------------------------------KALEIIQN--EPEHIEKLWKNTDYAKAQLLDH-----  314 (398)
T ss_dssp             HHH----------------------------------------HHHHHHHH--CTHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHH----------------------------------------HHHHHHhh--CHHHHHHHHHHHHHHHHHHHhc-----
Confidence            221                                        35555432  4577788889999999999876     


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                       |   ++++.|     .+.++.+.+++  +  ++. ++.++|.+ +||.++.|..|...                     
T Consensus       315 -g---~~~~~~-----~g~~~~~~~~~--~--~~~~~l~~~l~~-~gi~v~~~~~~~~~---------------------  359 (398)
T 3a2b_A          315 -G---FDLGAT-----ESPILPIFIRS--N--EKTFWVTKMLQD-DGVFVNPVVSPAVP---------------------  359 (398)
T ss_dssp             -T---CCBCSC-----CSSEEEEECCC--H--HHHHHHHHHHHH-TTEECEEECTTTSC---------------------
T ss_pred             -C---CCcCCC-----CCCEEEEEcCC--H--HHHHHHHHHHHH-CCcEEEeeCCCCCC---------------------
Confidence             2   233333     36788888753  1  122 34455554 59999988665321                     


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  ...+.||+|++.++|.+|++++++.|++++.+
T Consensus       360 ------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~  391 (398)
T 3a2b_A          360 ------------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ  391 (398)
T ss_dssp             ------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence                        11258999999999999999999999998754

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.76  E-value=6.5e-17  Score=171.42  Aligned_cols=307  Identities=13%  Similarity=0.130  Sum_probs=201.9

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++.      ++.++.+++++.+.+...                    .+.++.  +   .....++.+++++
T Consensus        43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la   97 (395)
T 1vef_A           43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL--------------------MAMPQT--L---PTPMRGEFYRTLT   97 (395)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCTT--S---CCHHHHHHHHHHH
T ss_pred             CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC--------------------CCCccc--c---CCHHHHHHHHHHH
Confidence            45789999654      567888888877643210                    111111  1   2356779999999


Q ss_pred             HHcCCCCCcEEEeccC-chHHHHHHHHH--HcCCEEEEEeccCCc---------c-------------------ccCHHH
Q 007454          181 DFLNISENDYVYDYES-EAVEAMIRTSE--KRGARVMSAEFSWPR---------L-------------------RINSEK  229 (603)
Q Consensus       181 ~~lna~~~e~vf~~es-~sV~~~~~~a~--~~Ga~V~~~~~~~~~---------g-------------------~i~~~~  229 (603)
                      +++|+++++++++... +++..++..+.  ..|.+|...+..++.         +                   ..+.++
T Consensus        98 ~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~  177 (395)
T 1vef_A           98 AILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEA  177 (395)
T ss_dssp             HTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHH
T ss_pred             HhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHH
Confidence            9999888888887543 45555454443  456777765433210         0                   136788


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcEEE
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDFLI  301 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Dflv  301 (603)
                      |++.|..      ++++|.+...+|.||.+.|    ++.| ++|+++|+++++|.++. .+..  ..++++....+|++ 
T Consensus       178 l~~~i~~------~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~-  250 (395)
T 1vef_A          178 LKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL-  250 (395)
T ss_dssp             HHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE-
T ss_pred             HHHHhcc------CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE-
Confidence            8887752      6899999888889999988    8855 58999999999999987 3220  01223334468977 


Q ss_pred             EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                       |++|+||. +.++|++++++++++.+.+...++                                   .-+.|..+.++
T Consensus       251 -s~sK~~~~-g~~~G~~~~~~~~~~~l~~~~~~~-----------------------------------~~~~~~~~~~a  293 (395)
T 1vef_A          251 -TLAKALGG-GVPLGVAVMREEVARSMPKGGHGT-----------------------------------TFGGNPLAMAA  293 (395)
T ss_dssp             -EECGGGGT-TSSCEEEEEEHHHHHTSCTTSSCC-----------------------------------SSTTCHHHHHH
T ss_pred             -EEcccccC-CCceEEEEehHHHHhhhccCCcCC-----------------------------------CcCCCHHHHHH
Confidence             67999985 677999999987655554310000                                   01123333322


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      ..                                        ++++.+..   +.+.++.+.+.++|.+.|.++..    
T Consensus       294 ~~----------------------------------------~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~----  326 (395)
T 1vef_A          294 GV----------------------------------------AAIRYLER---TRLWERAAELGPWFMEKLRAIPS----  326 (395)
T ss_dssp             HH----------------------------------------HHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCC----
T ss_pred             HH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhc----
Confidence            22                                        46666543   35677889999999999988632    


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK  541 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~  541 (603)
                        +.+...     ...+.++.|.+++.     ...+.++|.+++||.++.|                             
T Consensus       327 --~~~~~~-----~~~g~~~~~~~~~~-----~~~l~~~l~~~~gi~v~~~-----------------------------  365 (395)
T 1vef_A          327 --PKIREV-----RGMGLMVGLELKEK-----AAPYIARLEKEHRVLALQA-----------------------------  365 (395)
T ss_dssp             --TTEEEE-----EEETTEEEEEESSC-----SHHHHHHHHHHHCEECEES-----------------------------
T ss_pred             --CceEEE-----EEEEEEEEEEEcCh-----HHHHHHHHHHHCCeEEecC-----------------------------
Confidence              323211     12467899988652     2345556653679988743                             


Q ss_pred             cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                 +.+.||+|+++.+|.+|++++++.|++++
T Consensus       366 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  394 (395)
T 1vef_A          366 -----------GPTVIRFLPPLVIEKEDLERVVEAVRAVL  394 (395)
T ss_dssp             -----------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             -----------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence                       01589999999999999999999998875

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.76  E-value=4.7e-17  Score=170.87  Aligned_cols=300  Identities=13%  Similarity=0.145  Sum_probs=194.1

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      ++..|+|.+++.+      .++.+++++.+.+..                    .+++.+.  |.   .....+.|++|+
T Consensus        26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~--------------------~~~~~~~--y~---~~~~~~l~~~la   80 (375)
T 2eh6_A           26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEK--------------------LLHVSNL--YE---NPWQEELAHKLV   80 (375)
T ss_dssp             TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHH--------------------CSCCCTT--BC---CHHHHHHHHHHH
T ss_pred             CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHh--------------------ccccCcc--cC---CHHHHHHHHHHH
Confidence            5678999986643      678888887654321                    0121111  11   123467899999


Q ss_pred             HHcCCCCCcEEEeccC-chHHHHHHHH---H---HcC-CEEEEEeccCCc------------------------cc----
Q 007454          181 DFLNISENDYVYDYES-EAVEAMIRTS---E---KRG-ARVMSAEFSWPR------------------------LR----  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~es-~sV~~~~~~a---~---~~G-a~V~~~~~~~~~------------------------g~----  224 (603)
                      +++|+ +++++++... +++..++..+   .   +.| .+|......++.                        ..    
T Consensus        81 ~~~g~-~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (375)
T 2eh6_A           81 KHFWT-EGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL  159 (375)
T ss_dssp             HTSSS-CEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT
T ss_pred             hhcCC-CCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC
Confidence            99999 4677776543 3444444332   2   346 777766543321                        01    


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCCCCCCCCC--
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDSFGLSLVR--  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~ldls~~~--  296 (603)
                      .+.++|++.|.      +++++|.+...+|.||.+.|    ++.+ ++|+++|+++++|.++. .+..-..+++..++  
T Consensus       160 ~d~~~l~~~l~------~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  233 (375)
T 2eh6_A          160 NDIDSVYKLLD------EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLK  233 (375)
T ss_dssp             TCHHHHHTTCC------TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             chHHHHHHHhc------CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCC
Confidence            36677776664      36899999999999999988    8755 58999999999999987 44310124455555  


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +|++++|  |+||. +.++|++++++++++.+.+...++                                  ..++.++
T Consensus       234 ~d~~s~S--K~~~~-g~~~G~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~  276 (375)
T 2eh6_A          234 PDVIALA--KGLGG-GVPIGAILAREEVAQSFTPGSHGS----------------------------------TFGGNPL  276 (375)
T ss_dssp             CSEEEEC--GGGGT-TSCCEEEEEEHHHHTTCCTTSCCC----------------------------------SSTTCHH
T ss_pred             CCEEEEc--ccccC-CCCeEEEEEcHHHHhhhcCCCCCC----------------------------------CCCCCHH
Confidence            9999888  88874 778999999987665555321111                                  0122222


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ...++.                                         ++++...     .+.++.+.+.++|.+.|.++.
T Consensus       277 ~~~~~~-----------------------------------------~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~  310 (375)
T 2eh6_A          277 ACRAGT-----------------------------------------VVVDEVE-----KLLPHVREVGNYFKEKLKELG  310 (375)
T ss_dssp             HHHHHH-----------------------------------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHH-----------------------------------------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHh
Confidence            222111                                         3555432     667888899999999998763


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                            ...+        ...+.++.+.+++ +    ..++.++|. ++||.++.|                        
T Consensus       311 ------~~~~--------~~~g~~~~~~~~~-~----~~~~~~~l~-~~gi~~~~~------------------------  346 (375)
T 2eh6_A          311 ------KGKV--------KGRGLMLGLELER-E----CKDYVLKAL-EKGLLINCT------------------------  346 (375)
T ss_dssp             ------SSEE--------EEETTEEEEECSS-C----CHHHHHHHH-HTTEECEEE------------------------
T ss_pred             ------cCCc--------eEEEEEEEEEEcC-c----HHHHHHHHH-HCCCEEecC------------------------
Confidence                  1111        1246788888764 2    234455555 589987642                        


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                      +.+.||+|+++.+|.+|++++++.|+++|
T Consensus       347 ----------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          347 ----------------AGKVLRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             ----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             ----------------CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence                            01589999999999999999999998764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.75  E-value=2.2e-16  Score=170.47  Aligned_cols=137  Identities=9%  Similarity=0.011  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHH-HHHHHHHHcCCEEEEE-eccCC
Q 007454          168 ESGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVE-AMIRTSEKRGARVMSA-EFSWP  221 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~-~~~~~a~~~Ga~V~~~-~~~~~  221 (603)
                      .....++.|++|++++|++ +.++|..                        ++.++. .+...+++.|+++..+ +.+  
T Consensus        56 ~~~~~~~l~~~la~~~g~~-~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--  132 (421)
T 2ctz_A           56 MNPTVDVLEKRLAALEGGK-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE--  132 (421)
T ss_dssp             BCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC--
T ss_pred             CChHHHHHHHHHHHHhCCC-ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC--
Confidence            3456789999999999986 3454432                        122221 1222246678888877 553  


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc-cCCCCCCCCCCCCCCCcE
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA-LGPKDMDSFGLSLVRPDF  299 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq-~~~~~m~~ldls~~~~Df  299 (603)
                          +.++|+++|..      +|++|++.+.+|+||.++|++.| ++|+++|+++++|++| ..|....++   .+++|+
T Consensus       133 ----d~~~l~~~i~~------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~---~~~~Di  199 (421)
T 2ctz_A          133 ----RPEEFLALTDE------KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPL---AWGAAL  199 (421)
T ss_dssp             ----CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGG---GGTCSE
T ss_pred             ----CHHHHHHhhcc------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccCCcc---ccCCeE
Confidence                68899988863      69999999999999999999866 5899999999999999 777521233   457999


Q ss_pred             EEEcccccCCCCCC-ceEEEEEe
Q 007454          300 LICSFYQIFGENPS-GFGCLFVK  321 (603)
Q Consensus       300 lv~S~hK~fG~~P~-G~G~L~vk  321 (603)
                      +++|+||+||+ |. ++|++++.
T Consensus       200 ~~~s~~K~l~~-~g~~~G~~~~~  221 (421)
T 2ctz_A          200 VTHSLTKWVGG-HGAVIAGAIVD  221 (421)
T ss_dssp             EEEETTTTTTC-SSCCCCEEEEE
T ss_pred             EEECCcccccC-CCCcEEEEEEe
Confidence            99999999986 54 37988886

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.75  E-value=5.4e-17  Score=168.49  Aligned_cols=308  Identities=13%  Similarity=0.054  Sum_probs=195.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      +..+||++...++.++.+++++.+.+...                         ...|+  .....+++|+.+++++| +
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~~-------------------------~~~~~--~~~~~~~l~~~la~~~g-~   58 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSSGQ-------------------------AGPYG--TDELTAQVKRKFCEIFE-R   58 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSSC-------------------------CCSTT--CSHHHHHHHHHHHHHHT-S
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhccCc-------------------------ccccc--cchHHHHHHHHHHHHhC-C
Confidence            45789999888888999999987642100                         00111  12466789999999999 5


Q ss_pred             CCcEEEecc----------------------CchHHHHHHH--HHHc--CCEEEEEeccCCccccCHHHHHH-HHhhcC-
Q 007454          187 ENDYVYDYE----------------------SEAVEAMIRT--SEKR--GARVMSAEFSWPRLRINSEKLRK-MVVSKG-  238 (603)
Q Consensus       187 ~~e~vf~~e----------------------s~sV~~~~~~--a~~~--Ga~V~~~~~~~~~g~i~~~~L~~-~l~~~~-  238 (603)
                      +.+++|+..                      ..........  ++..  |+++..++.+  ++.++.++|++ +|.... 
T Consensus        59 ~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~d~~~l~~~~i~~~~~  136 (356)
T 1v72_A           59 DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGD  136 (356)
T ss_dssp             CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTC
T ss_pred             CCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CCeEcHHHHHHHhhhcchh
Confidence            556766421                      1111111122  3444  8999888875  47889999999 886310 


Q ss_pred             CCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC------CCCCCCCCCCCCCCcEEEEcccccC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG------PKDMDSFGLSLVRPDFLICSFYQIF  308 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~------~~~m~~ldls~~~~Dflv~S~hK~f  308 (603)
                      ...+++++|.+...+| ||.++|.+   .+ ++|+++|+++++|+++..      +..+..+++ ..++|++++|+||+ 
T Consensus       137 ~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~-  213 (356)
T 1v72_A          137 VHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW-KAGVDALSFGATKN-  213 (356)
T ss_dssp             TTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG-GGTCCEEEECCGGG-
T ss_pred             hccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhh-hhcCCEEEEecccC-
Confidence            0112588988888766 99977654   33 478999999999998752      221111111 13789999999999 


Q ss_pred             CCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454          309 GENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG  388 (603)
Q Consensus       309 G~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~  388 (603)
                      |. |.|.|+++.++++++.+....                                    ...|+.+..+.++..     
T Consensus       214 g~-~~G~g~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~-----  251 (356)
T 1v72_A          214 GV-LAAEAIVLFNTSLATEMSYRR------------------------------------KRAGHLSSKMRFLSA-----  251 (356)
T ss_dssp             TC-SSCEEEEESSGGGHHHHHHHH------------------------------------HHTTCCCSSTHHHHH-----
T ss_pred             CC-cCccEEEEECHHHHhhHHHHh------------------------------------hccCchhhhHHHHHH-----
Confidence            65 889999988776654332100                                    001111111111111     


Q ss_pred             ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454          389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI  468 (603)
Q Consensus       389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I  468 (603)
                                                         .+++.+..-.+..+.++.+.+.++|.+.|.+++        .+++
T Consensus       252 -----------------------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--------g~~~  288 (356)
T 1v72_A          252 -----------------------------------QIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG--------GVEV  288 (356)
T ss_dssp             -----------------------------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCT--------TEEE
T ss_pred             -----------------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCC--------CcEE
Confidence                                               123333221244566777889999999998753        2677


Q ss_pred             eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccccc
Q 007454          469 YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKD  548 (603)
Q Consensus       469 ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  548 (603)
                      +.|.    .++++.+.+++        +++++| .++||.++.|.+                                  
T Consensus       289 ~~~~----~~~~~~~~~~~--------~~~~~l-~~~gi~v~~g~~----------------------------------  321 (356)
T 1v72_A          289 LGGT----EANILFCRLDS--------AMIDAL-LKAGFGFYHDRW----------------------------------  321 (356)
T ss_dssp             ESCC----CSSEEEEEECH--------HHHHHH-HHTTCBCBCSSS----------------------------------
T ss_pred             ccCC----CccEEEEEcCH--------HHHHHH-HhcCeEEecccc----------------------------------
Confidence            6652    46777777642        345555 567998886631                                  


Q ss_pred             CCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          549 KANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       549 ~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                       +   .+.+|+|+++.+|.+|++++++.|+++++.
T Consensus       322 -~---~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          322 -G---PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             -S---TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             -C---CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence             1   258999999999999999999999988754

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.75  E-value=6e-17  Score=174.54  Aligned_cols=321  Identities=9%  Similarity=0.016  Sum_probs=203.4

Q ss_pred             CceeeecCCCC-----CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          108 NHTCLDYFGIG-----LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       108 ~~vYLDyaa~t-----l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      +.|+|+.+...     +.++.+++++.+.+......               .+..  .         ....+.|+.|+++
T Consensus        55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~---------------~y~~--~---------~g~~~lr~~la~~  108 (427)
T 3dyd_A           55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN---------------GYAP--S---------IGFLSSREEIASY  108 (427)
T ss_dssp             CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS---------------SCCC--T---------TCCHHHHHHHHHH
T ss_pred             CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC---------------CCCC--C---------CCcHHHHHHHHHH
Confidence            45889877743     67888888876543210000               0000  0         1134789999999


Q ss_pred             cC-----CCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccC-CccccCHHHHHHHH
Q 007454          183 LN-----ISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMV  234 (603)
Q Consensus       183 ln-----a~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l  234 (603)
                      ++     +++++++++... +++..                     ....++..|+++..++.++ .+..++.++|++.|
T Consensus       109 ~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l  188 (427)
T 3dyd_A          109 YHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLI  188 (427)
T ss_dssp             HCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSC
T ss_pred             HhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh
Confidence            99     778888776432 12222                     2344566788888887753 23467899998887


Q ss_pred             hhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCCCc---EEEEc
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVRPD---FLICS  303 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~~D---flv~S  303 (603)
                      ..      +++++++.+.+|.||..+|   ++.+ ++|+++|+++++|.++..    ++  ....+..+..|   +++.|
T Consensus       189 ~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~~~~~~vi~~~S  260 (427)
T 3dyd_A          189 DE------KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATLSTDVPILSCGG  260 (427)
T ss_dssp             CT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGGCSSCCEEEEEE
T ss_pred             cc------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHhCCCCcEEEEee
Confidence            53      5899999999999999999   6644 478999999999998765    33  23344444444   66779


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      ++|.||  ..|  +|++++++... .+.+......                     .      ... ....++|..+..+
T Consensus       261 ~sK~~~--~~G~riG~~~~~~~~~-~~~~~i~~~l---------------------~------~~~-~~~~~~~~~~~~a  309 (427)
T 3dyd_A          261 LAKRWL--VPGWRLGWILIHDRRD-IFGNEIRDGL---------------------V------KLS-QRILGPCTIVQGA  309 (427)
T ss_dssp             STTTSS--CGGGCCEEEEEECSTT-SSHHHHHHHH---------------------H------HHH-HHHCCSCHHHHHH
T ss_pred             ccccCC--CcCcceEEEEecCcch-hhHHHHHHHH---------------------H------HHH-hccCCCCHHHHHH
Confidence            999998  447  79999886421 1111000000                     0      000 0123444444433


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +.                                        ++++......++...++++.++++|.+.|.+++     
T Consensus       310 ~~----------------------------------------~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----  344 (427)
T 3dyd_A          310 LK----------------------------------------SILCRTPGEFYHNTLSFLKSNADLCYGALAAIP-----  344 (427)
T ss_dssp             HH----------------------------------------HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred             HH----------------------------------------HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence            32                                        344321122356777888889999999998763     


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccC--CCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDW--KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~--~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                         .++++.|.    .+..+.+.+...  ....-..+++++|++++||.++.|..|..                      
T Consensus       345 ---g~~~~~p~----~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~----------------------  395 (427)
T 3dyd_A          345 ---GLRPVRPS----GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY----------------------  395 (427)
T ss_dssp             ---TEEEECCS----BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC----------------------
T ss_pred             ---CceecCCC----eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC----------------------
Confidence               26777653    355666666521  00011235567787889999998865521                      


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    .+.+|+|++  ++.++|+++++.|++++.+
T Consensus       396 --------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~  423 (427)
T 3dyd_A          396 --------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQ  423 (427)
T ss_dssp             --------------TTEEEEESC--SCHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence                          258999997  7999999999999998764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.75  E-value=4.6e-17  Score=173.76  Aligned_cols=268  Identities=15%  Similarity=0.121  Sum_probs=175.5

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHHH---------------------cCCEEEEEeccCCccccCHHHH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSEK---------------------RGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~~---------------------~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .++.++++++++|++. .+++...++++..++.....                     .|+++..++.      .+.++|
T Consensus       106 ~~~l~~~la~~~g~~~-~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~------~d~~~l  178 (409)
T 3kki_A          106 KPMIEKRLAKFTGFDE-CLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH------NNCDHL  178 (409)
T ss_dssp             SCHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT------TCHHHH
T ss_pred             HHHHHHHHHHHhCCCe-EEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC------CCHHHH
Confidence            4578889999999764 45554333333333333223                     3444443321      578999


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC--------CCCCCCCCCcEEE
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD--------SFGLSLVRPDFLI  301 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~--------~ldls~~~~Dflv  301 (603)
                      ++.|..+     ++++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..+. +.        .+++. .++|+++
T Consensus       179 e~~l~~~-----~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~-~g~~g~~~~~~~~~~-~~~di~~  251 (409)
T 3kki_A          179 RMLIQRH-----GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGT-HGPNGAGLLAELGLT-REVHFMT  251 (409)
T ss_dssp             HHHHHHH-----CSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SSGGGCCHHHHHTCG-GGCSEEE
T ss_pred             HHHHHhc-----CCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccc-cCCCCCcchhhcCCC-CCCCEEE
Confidence            9999752     46899999999999999999855 58999999999999986643 00        12232 3689999


Q ss_pred             EcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          302 CSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       302 ~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      .|++|.||  +. .|+++.+++.++.+....            ..+                     .-.++.+...+++
T Consensus       252 ~s~sK~~~--~~-gg~v~~~~~~~~~~~~~~------------~~~---------------------~~~~~~~~~~~aa  295 (409)
T 3kki_A          252 ASLAKTFA--YR-AGAIWCNNEVNRCVPFIS------------YPA---------------------IFSSTLLPYEAAG  295 (409)
T ss_dssp             EESSSTTC--SS-CEEEEESSSGGGTHHHHC------------HHH---------------------HHSBCCCHHHHHH
T ss_pred             eecchhhC--CC-ceEEEECHHHHHHHHHhC------------cCc---------------------cccCCCcHHHHHH
Confidence            99999999  33 488888877654433100            000                     0112233333333


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +.                                        ++++.++..  +.+.++.+.+.++|.+.|.++.     
T Consensus       296 ~~----------------------------------------aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-----  328 (409)
T 3kki_A          296 LE----------------------------------------TTLEIIESA--DNRRQHLDRMARKLRIGLSQLG-----  328 (409)
T ss_dssp             HH----------------------------------------HHHHHHHHC--HHHHHHHHHHHHHHHHHHHTTT-----
T ss_pred             HH----------------------------------------HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcC-----
Confidence            22                                        467766553  6788888999999999998862     


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK  541 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~  541 (603)
                          +.+.      ..++++.+.+.+..   -...+.++|. ++||.++.++....                        
T Consensus       329 ----~~~~------~~~~~~~~~~~~~~---~~~~~~~~L~-~~Gv~v~~~~~~~~------------------------  370 (409)
T 3kki_A          329 ----LTIR------SESQIIGLETGDER---NTEKVRDYLE-SNGVFGSVFCRPAT------------------------  370 (409)
T ss_dssp             ----CCCC------CSSSEEEEEEESHH---HHHHHHHHHH-HTTEECEEECTTSS------------------------
T ss_pred             ----CccC------CCCCEEEEEeCCHH---HHHHHHHHHH-HCCceEeeeCCCCc------------------------
Confidence                2222      25788988886521   0112344554 45999876432110                        


Q ss_pred             cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                               ..+.+.||+|++.++|.+||+++++.|+++++.
T Consensus       371 ---------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          371 ---------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             ---------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence                     122369999999999999999999999998754

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.74  E-value=8.9e-18  Score=182.99  Aligned_cols=262  Identities=12%  Similarity=0.040  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Cc----
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PR----  222 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~----  222 (603)
                      ..+.++|+.+++ +|++ ++++|+..+ ++                     .......+...|+++++++..+ ++    
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~  134 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNHY  134 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSSE
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCcC
Confidence            356789999999 9987 566654321 11                     1222233445688888888732 22    


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCC-----CCCCCCCC
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMD-----SFGLSLVR  296 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~-----~ldls~~~  296 (603)
                      +.++.++|   +.      ++++++++.+ .|.||.++|++.| ++|+++|+++++|+++.. +  .     ++++..++
T Consensus       135 ~~~d~~~l---~~------~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~--~~f~~~~~~~~~~g  201 (446)
T 2x3l_A          135 NKVNLSRL---NN------DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-H--FGLQGFPDSTLNYQ  201 (446)
T ss_dssp             EEEEC----------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-T--TTSTTSCCCGGGGT
T ss_pred             CCCCHHHH---cC------CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-h--hccCCCCCChHHcC
Confidence            45677766   22      3588899988 6669999999966 589999999999999876 2  1     45555668


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +|++++|+||++++ |+|+|+|+++++.++ +.+...++                             ..  +..+|+++
T Consensus       202 ~Di~~~S~~K~l~~-~~g~g~l~~~~~~i~-~~~~~~~~-----------------------------~~--~~~~s~~~  248 (446)
T 2x3l_A          202 ADYVVQSFHKTLPA-LTMGSVLYIHKNAPY-RENIIEYL-----------------------------SY--FQTSSPSY  248 (446)
T ss_dssp             CSEEEECHHHHSSS-CTTCEEEEEETTCTT-HHHHHHHH-----------------------------HH--HSCSSCCH
T ss_pred             CCEEEECCcccccc-ccccEEEEEcCCcCC-HHHHHHHH-----------------------------HH--HcCCCchH
Confidence            99999999995543 889999999988653 22100000                             01  35788888


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ..++++.                                        .+++++...|.+.+.++.+.+.+++.+.  .  
T Consensus       249 ~~~aal~----------------------------------------~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g--  284 (446)
T 2x3l_A          249 LIMASLE----------------------------------------SAAQFYKTYDSTLFFAKRAQLIECLENK--G--  284 (446)
T ss_dssp             HHHHHHH----------------------------------------HHHHHHHHCCCHHHHHHHHHHHHHHHHH--T--
T ss_pred             HHHHHHH----------------------------------------HHHHHHHHhCHHHHHHHHHHHHHHHHHc--C--
Confidence            8776665                                        5778888888887888999999988877  2  


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEe-eCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLS-YGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr-~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                               ++++++..    +..+.|++++.     +...+.+.+.++||.++ .|                       
T Consensus       285 ---------~~~~~~~~----~~~l~i~~~~~-----~~~~l~~~L~~~GI~v~~~g-----------------------  323 (446)
T 2x3l_A          285 ---------FEMLQVDD----PLKLLIKYEGF-----TGHDIQNWFMNAHIYLELAD-----------------------  323 (446)
T ss_dssp             ---------CEEEECSS----TTEEEEECTTS-----CHHHHHHHHHHTTEEESEEC-----------------------
T ss_pred             ---------CEECcCCC----CeEEEEEeCCc-----CHHHHHHHHHHCCCEEEecC-----------------------
Confidence                     45666531    23578887643     33445554445599986 22                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                        .+.||+|++.++|.+|+ ++++.|++++..
T Consensus       324 ------------------~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~  352 (446)
T 2x3l_A          324 ------------------DYQALAILPLWHHDDTY-LFDSLLRKIEDM  352 (446)
T ss_dssp             ------------------SSCEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred             ------------------CCEEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence                              14799999999999999 999999998754

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.74  E-value=1.3e-16  Score=176.11  Aligned_cols=336  Identities=12%  Similarity=0.087  Sum_probs=195.6

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH-HHHHHHHHHHHHHHcCCCCCcE---
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDY---  190 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~-~~~~~~aR~~Ia~~lna~~~e~---  190 (603)
                      ++-.+.|+.|++++...+.+.                 |..+||.+.+..|... .++++.+|+++++++|++.+++   
T Consensus        61 as~n~~~~~V~eA~~~~l~~~-----------------y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~  123 (490)
T 2a7v_A           61 ASENFCSRAALEALGSCLNNK-----------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVN  123 (490)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTC-----------------CCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred             CCCCCCCHHHHHHHHHHHcCC-----------------CccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceE
Confidence            666778999999987755421                 2237787776545443 4666789999999999998765   


Q ss_pred             EEecc-CchHHHHHHHH-----------------------------HHcCC--EEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          191 VYDYE-SEAVEAMIRTS-----------------------------EKRGA--RVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       191 vf~~e-s~sV~~~~~~a-----------------------------~~~Ga--~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      ++.+. +.+...++...                             ...|.  ++...++++.++.+|.++|++++... 
T Consensus       124 v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~-  202 (490)
T 2a7v_A          124 VQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-  202 (490)
T ss_dssp             CCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH-
T ss_pred             EeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhc-
Confidence            22211 11111111111                             11232  23333445457899999999999642 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCc
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G  314 (603)
                          +++|+++...+  +|...|++.| ++|+++|+++++|+++..+.   ...+..+.  ++|++++|+||.|++ |.|
T Consensus       203 ----~~klIi~~~s~--~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~G-p~G  273 (490)
T 2a7v_A          203 ----RPRLIIAGTSA--YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRG-ARS  273 (490)
T ss_dssp             ----CCSEEEECCSS--CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCS-CSC
T ss_pred             ----CCcEEEEcCCC--CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCcc-ccc
Confidence                46787765443  4678899966 58999999999999986431   00122232  689999999997765 888


Q ss_pred             eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccch
Q 007454          315 FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGE  394 (603)
Q Consensus       315 ~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~  394 (603)
                       |+++.++++.. +.+.  .|.-.+. .....+  +.            ..+. ...|+++...+++++           
T Consensus       274 -G~i~~~~~~~~-~~~~--~~~~~~~-~l~~~i--~~------------~~~~-g~qggp~~~~iaAla-----------  322 (490)
T 2a7v_A          274 -GLIFYRKGVKA-VDPK--TGREIPY-TFEDRI--NF------------AVFP-SLQGGPHNHAIAAVA-----------  322 (490)
T ss_dssp             -EEEEEECSEEE-EETT--TEEEEEC-CCHHHH--HH------------HHTT-TTCCSCCHHHHHHHH-----------
T ss_pred             -hheeeccchhc-cccc--ccchhhH-HHHHHH--HH------------Hhcc-cCCCCchHHHHHHHH-----------
Confidence             99999886421 1110  0000000 000000  00            0000 124667777777765           


Q ss_pred             hHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC
Q 007454          395 ISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR  474 (603)
Q Consensus       395 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~  474 (603)
                                                   .|+..+..-+++...+++...+++|.+.|.++      |   +++..+.  
T Consensus       323 -----------------------------~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~------G---~~v~~~~--  362 (490)
T 2a7v_A          323 -----------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------G---YSLVSGG--  362 (490)
T ss_dssp             -----------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS--
T ss_pred             -----------------------------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc------C---cEEecCC--
Confidence                                         45555432245677788888999999999875      3   3444321  


Q ss_pred             CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCC
Q 007454          475 FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGI  554 (603)
Q Consensus       475 ~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  554 (603)
                       ...+++.+.+.+. |  +....+.+++++.||.+..+.....    .                           .....
T Consensus       363 -t~t~lv~vdl~~~-g--~~~~~~~~~L~~~GI~v~~~~~p~d----~---------------------------~p~~~  407 (490)
T 2a7v_A          363 -TDNHLVLVDLRPK-G--LDGARAERVLELVSITANKNTCPGD----R---------------------------SAITP  407 (490)
T ss_dssp             -CSSSEEEEECTTT-T--CCHHHHHHHHHHTTEECEEECCTTC----C---------------------------CSSSC
T ss_pred             -CCCeEEEEEeCCC-C--CCHHHHHHHHHhCCeEEecCccCCC----C---------------------------CCCCC
Confidence             2356788877642 2  3445677778889999876522110    0                           01123


Q ss_pred             CEEEEecCCC----CCHHHHHHHHHHHHHHHhh
Q 007454          555 TVVTASLGYL----ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       555 g~VR~Slg~~----tt~eDVd~l~~~l~~~l~~  583 (603)
                      +.||++...+    .+++|+++++++|.+.+..
T Consensus       408 ~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~  440 (490)
T 2a7v_A          408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI  440 (490)
T ss_dssp             SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence            5799977544    4899999999999998864

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.74  E-value=2.3e-17  Score=174.38  Aligned_cols=314  Identities=12%  Similarity=0.079  Sum_probs=198.3

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--  183 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--  183 (603)
                      ++.++|+.+...+ .++.+.+++.+.+...            .+    .+..+           .-..+.|++|++++  
T Consensus        26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------~~----~y~~~-----------~g~~~l~~~la~~~~~   78 (389)
T 1gd9_A           26 KDVISLGIGEPDFDTPQHIKEYAKEALDKG------------LT----HYGPN-----------IGLLELREAIAEKLKK   78 (389)
T ss_dssp             SSCEECCCCSCSSCCCHHHHHHHHHHHHTT------------CC----SCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred             cCeEecCCCCCCCCCCHHHHHHHHHHHhCC------------CC----CCCCC-----------CCcHHHHHHHHHHHHH
Confidence            3578998887663 5677888766543210            00    00000           01246777888887  


Q ss_pred             --C--CCCCc-EEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCC-ccccCHHHHHHHHh
Q 007454          184 --N--ISEND-YVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVV  235 (603)
Q Consensus       184 --n--a~~~e-~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~  235 (603)
                        |  +++++ ++++... +++                     ..+...++..|+++..+++++. +..++.++|++.|.
T Consensus        79 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~  158 (389)
T 1gd9_A           79 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT  158 (389)
T ss_dssp             HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred             HhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC
Confidence              8  56777 8765321 111                     1123345567999999988642 34689999999886


Q ss_pred             hcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCC---CCCCCC----CCCcEEEEcc
Q 007454          236 SKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMD---SFGLSL----VRPDFLICSF  304 (603)
Q Consensus       236 ~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~---~ldls~----~~~Dflv~S~  304 (603)
                      .      ++++++++..+|.||.++|   ++.+ ++|+++|+++++|.++....- .   ..++..    .+.|+++.|+
T Consensus       159 ~------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~s~  231 (389)
T 1gd9_A          159 D------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIY-DDARHYSIASLDGMFERTITVNGF  231 (389)
T ss_dssp             T------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBC-TTCCCCCGGGSTTCGGGEEEEEES
T ss_pred             c------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhccc-CCCCCCCHhhccCCCCCEEEEecC
Confidence            3      5889999999999999997   5534 478999999999998876431 0   122222    4579999999


Q ss_pred             cccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          305 YQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      ||+||  +.|  +|++++++++++.+.+...+                                   -.++.+.....++
T Consensus       232 sK~~~--~~G~r~G~~~~~~~~~~~l~~~~~~-----------------------------------~~~~~~~~~~~a~  274 (389)
T 1gd9_A          232 SKTFA--MTGWRLGFVAAPSWIIERMVKFQMY-----------------------------------NATCPVTFIQYAA  274 (389)
T ss_dssp             TTTTT--CGGGCCEEEECCHHHHHHHHHHHTT-----------------------------------TTCSCCHHHHHHH
T ss_pred             hhhcC--CcccceEEEEECHHHHHHHHHHHhh-----------------------------------hccCCCHHHHHHH
Confidence            99999  558  69999887655434321000                                   0122333332222


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~-iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      .                                        ++++.... -.++.+.++.+.+.++|.+.|.++      
T Consensus       275 ~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------  308 (389)
T 1gd9_A          275 A----------------------------------------KALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM------  308 (389)
T ss_dssp             H----------------------------------------HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             H----------------------------------------HHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc------
Confidence            1                                        23332111 135677888889999999999875      


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                      |   +++++|.    .+..+.+.+++. +  ++. .+.++|++++||.++.|..|...                      
T Consensus       309 g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------------  356 (389)
T 1gd9_A          309 G---LPTVKPK----GAFYIFPRIRDT-G--LTSKKFSELMLKEARVAVVPGSAFGKA----------------------  356 (389)
T ss_dssp             T---CCCCCCC----BTTEECCBCGGG-T--CCHHHHHHHHHHHTCEECEEGGGGCGG----------------------
T ss_pred             C---CeecCCC----eeeEEEEeccCC-C--CCHHHHHHHHHHhCCEEEeCchhhCCC----------------------
Confidence            2   3333332    244455566521 1  223 34555656899999988665320                      


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                  +.+.||+|++.  +.+||+++++.|++++++
T Consensus       357 ------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~  385 (389)
T 1gd9_A          357 ------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE  385 (389)
T ss_dssp             ------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                        12589999995  899999999999988754

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.74  E-value=5.2e-16  Score=166.79  Aligned_cols=317  Identities=9%  Similarity=0.019  Sum_probs=201.7

Q ss_pred             CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||++++.      +.++.+++++.+.+...                   ..++.+.  +   ......+.+++|+
T Consensus        41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~-------------------~~~~~~~--~---~~~~~~~l~~~la   96 (429)
T 1s0a_A           41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAM-------------------SHVMFGG--I---THAPAIELCRKLV   96 (429)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHC-------------------SCCCCSS--E---ECHHHHHHHHHHH
T ss_pred             CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhc-------------------ccccccc--c---CCHHHHHHHHHHH
Confidence            467899997664      25788999887643210                   0111011  0   1133456777899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH---H----cCCEEEEEeccCC-------------------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE---K----RGARVMSAEFSWP-------------------------------  221 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~---~----~Ga~V~~~~~~~~-------------------------------  221 (603)
                      +++++++++++|+.. ++++..++..+.   +    .|.+|......++                               
T Consensus        97 ~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (429)
T 1s0a_A           97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAP  176 (429)
T ss_dssp             HHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEEC
T ss_pred             HhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeC
Confidence            999998899988864 345555444432   1    2555554432111                               


Q ss_pred             ---------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-ccccccccc----HHHH-HHHHhCCcEEEEecccc-CCC
Q 007454          222 ---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPK  285 (603)
Q Consensus       222 ---------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~  285 (603)
                               .+.++.++|++.|...   .+++++|.+... +|+||.+.|    ++.+ ++|+++|+++++|.+|. .+.
T Consensus       177 ~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~  253 (429)
T 1s0a_A          177 APQSRMDGEWDERDMVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGR  253 (429)
T ss_dssp             CCCSBC-CCCCGGGGHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTT
T ss_pred             CCcccccccchHHHHHHHHHHHHhC---CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcc
Confidence                     1246788999988631   136889999988 999999888    8755 58999999999999986 332


Q ss_pred             C--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccC
Q 007454          286 D--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQT  362 (603)
Q Consensus       286 ~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~  362 (603)
                      .  +..++.....+|++++|  |.||+ + .++|++++++++++.+.+   ++.       ..                 
T Consensus       254 ~g~~~~~~~~~~~~d~~t~s--K~l~~-G~~~iG~~~~~~~~~~~l~~---~~~-------~~-----------------  303 (429)
T 1s0a_A          254 TGKLFACEHAEIAPDILCLG--KALTG-GTMTLSATLTTREVAETISN---GEA-------GC-----------------  303 (429)
T ss_dssp             TSSSSGGGGGTCCCSEEEEC--GGGGT-SSSCCEEEEECHHHHHHHHT---STT-------SS-----------------
T ss_pred             cchHHHhhhcCCCCCEEEec--ccccC-CCccceEEEeCHHHHHHhhc---CCC-------cc-----------------
Confidence            1  11233334578999887  88874 5 789999998876554432   110       00                 


Q ss_pred             cccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454          363 SKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR  440 (603)
Q Consensus       363 ~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r  440 (603)
                         +  ...+|  .|..++++..                                        ++++.+.+   +.+.++
T Consensus       304 ---~--~~~~t~~~n~~~~~a~~----------------------------------------aal~~~~~---~~~~~~  335 (429)
T 1s0a_A          304 ---F--MHGPTFMGNPLACAAAN----------------------------------------ASLAILES---GDWQQQ  335 (429)
T ss_dssp             ---C--SCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHT---CHHHHH
T ss_pred             ---c--ccCCCCCCCHHHHHHHH----------------------------------------HHHHHHHh---CCHHHH
Confidence               0  01223  2444443332                                        57776654   256678


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCC
Q 007454          441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS  520 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~  520 (603)
                      ++.++++|.++|.++..     .|.+..+-     ..+.++.|.+.+.    ++...+.+.+.++||.++.+        
T Consensus       336 ~~~~~~~l~~~L~~l~~-----~~~~~~~~-----~~g~~~~~~~~~~----~~~~~l~~~l~~~Gi~v~~~--------  393 (429)
T 1s0a_A          336 VADIEVQLREQLAPARD-----AEMVADVR-----VLGAIGVVETTHP----VNMAALQKFFVEQGVWIRPF--------  393 (429)
T ss_dssp             HHHHHHHHHHHHGGGGG-----CTTEEEEE-----EETTEEEEEESSC----BCHHHHHHHHHHTTEECCCB--------
T ss_pred             HHHHHHHHHHHHHHHhc-----CCCEEEEE-----EeeEEEEEEECCc----ccHHHHHHHHHHCCCEEecc--------
Confidence            88999999999988631     12243221     1366888887641    23444444444678887520        


Q ss_pred             chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                       .+.||+|+++.+|.+||+++++.|+++++.
T Consensus       394 ---------------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~~~  423 (429)
T 1s0a_A          394 ---------------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             ---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             ---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                                             148999999999999999999999988643

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.74  E-value=5.8e-17  Score=173.11  Aligned_cols=263  Identities=11%  Similarity=0.046  Sum_probs=166.6

Q ss_pred             HHHHHcCCEEEEEeccCC--ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HH-HHHHHhCCcEEEE
Q 007454          204 RTSEKRGARVMSAEFSWP--RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LW-MRIAQENDWHILI  277 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~--~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~-i~~a~e~g~~vlv  277 (603)
                      ..++..|+++..++++..  ++.++.++|++.|..      ++++|+++..+|.||.++|.   +. +++|+++|+++++
T Consensus       125 ~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~------~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~  198 (411)
T 2o0r_A          125 PVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTP------RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVIT  198 (411)
T ss_dssp             HHHHHTTCEEEEEECEEETTEEECCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHcCCEEEEeeccccccCCCCCHHHHHHhhcc------CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            345567888888887632  356899999998853      68999999999999999997   33 3578999999999


Q ss_pred             eccccCCCC--CCCCCCC----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccc
Q 007454          278 DACALGPKD--MDSFGLS----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT  349 (603)
Q Consensus       278 DAaq~~~~~--m~~ldls----~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~  349 (603)
                      |.++....-  -....+.    ..+.|+++.|++|+||  +.|  +|++++++++++.+....            .    
T Consensus       199 De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~------------~----  260 (411)
T 2o0r_A          199 DEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN--CTGWKIGWACGPAELIAGVRAAK------------Q----  260 (411)
T ss_dssp             ECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT--CTTTCEEEEECCHHHHHHHHHHH------------H----
T ss_pred             EccccccccCCCCCcChhhccCCCCCEEEEeechhhcC--CccceEEEEeeCHHHHHHHHHHH------------h----
Confidence            999875310  0112222    2468999999999999  668  999998766543332100            0    


Q ss_pred             cccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH
Q 007454          350 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV  429 (603)
Q Consensus       350 ~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~  429 (603)
                                         ....+.+....+++.                                        .+++..
T Consensus       261 -------------------~~~~~~~~~~~~a~~----------------------------------------~~l~~~  281 (411)
T 2o0r_A          261 -------------------YLSYVGGAPFQPAVA----------------------------------------LALDTE  281 (411)
T ss_dssp             -------------------HHTSCCCTTHHHHHH----------------------------------------HHHHHC
T ss_pred             -------------------hccCCCChHHHHHHH----------------------------------------HHHhCC
Confidence                               011222222222221                                        344432


Q ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcE
Q 007454          430 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENIS  508 (603)
Q Consensus       430 ~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~  508 (603)
                      . -.++.+.++.+.+.++|.+.|.++      |   +++++|.    .+..+.+.+++..+  ++. +++++|++++||.
T Consensus       282 ~-~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~  345 (411)
T 2o0r_A          282 D-AWVAALRNSLRARRDRLAAGLTEI------G---FAVHDSY----GTYFLCADPRPLGY--DDSTEFCAALPEKVGVA  345 (411)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHH------T---CEECCCC----BSSEEEEECGGGTC--CCHHHHHHHHHHHHSEE
T ss_pred             h-HHHHHHHHHHHHHHHHHHHHHHHc------C---CEecCCC----eeEEEEEecCCCCC--CCHHHHHHHHHHhCCEE
Confidence            1 135677888889999999999875      2   4565542    35578888876311  122 3455677788999


Q ss_pred             EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhhcc
Q 007454          509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFVEK  588 (603)
Q Consensus       509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~  588 (603)
                      ++.|..|......++     +.+                  .....+.||+|++.  +.+||+++++.|+++++.. -.+
T Consensus       346 v~~g~~f~~~~~~~~-----~~~------------------~~~~~~~iRis~~~--~~e~i~~~~~~l~~~~~~~-~~~  399 (411)
T 2o0r_A          346 AIPMSAFCDPAAGQA-----SQQ------------------ADVWNHLVRFTFCK--RDDTLDEAIRRLSVLAERP-ATG  399 (411)
T ss_dssp             CEEGGGGSCCC-------------------------------CCGGGCEEEECCS--CHHHHHHHHHHHGGGGC------
T ss_pred             EcChhhhCCCccccc-----ccc------------------ccCCCCeEEEEecC--CHHHHHHHHHHHHHHHhcc-CcC
Confidence            999987743221111     111                  01123689999974  8999999999999987653 333


Q ss_pred             ccc
Q 007454          589 ARW  591 (603)
Q Consensus       589 ~~~  591 (603)
                      .+|
T Consensus       400 ~~~  402 (411)
T 2o0r_A          400 VPR  402 (411)
T ss_dssp             ---
T ss_pred             CCc
Confidence            455

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.74  E-value=1.5e-16  Score=168.02  Aligned_cols=313  Identities=11%  Similarity=0.048  Sum_probs=197.5

Q ss_pred             CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454          108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL---  183 (603)
Q Consensus       108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l---  183 (603)
                      +.++|+.+... ..++.+.+++.+.+...  .          .    .+..+  .   |      ..+.|++|++++   
T Consensus        31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~----------~----~y~~~--~---g------~~~l~~~la~~l~~~   83 (386)
T 1u08_A           31 QAINLSQGFPDFDGPRYLQERLAHHVAQG--A----------N----QYAPM--T---G------VQALREAIAQKTERL   83 (386)
T ss_dssp             TCEECCCSSCSSCCCHHHHHHHHHHHHTT--C----------C----SCCCT--T---C------CHHHHHHHHHHHHHH
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHHhh--c----------c----CCCCC--C---C------CHHHHHHHHHHHHHH
Confidence            46888887655 35678888876543210  0          0    00100  0   0      235666667664   


Q ss_pred             -C--CCCC-cEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhc
Q 007454          184 -N--ISEN-DYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSK  237 (603)
Q Consensus       184 -n--a~~~-e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~  237 (603)
                       |  ++++ +++++... +++..                     ....++..|+++..++++..++.++.++|++.|.. 
T Consensus        84 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-  162 (386)
T 1u08_A           84 YGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSE-  162 (386)
T ss_dssp             HSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCCT-
T ss_pred             hCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhcc-
Confidence             6  4677 88775321 12111                     22345567889988888644567899999998852 


Q ss_pred             CCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccC----CCCCCCC-CCC-CCCCcEEEEccccc
Q 007454          238 GKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALG----PKDMDSF-GLS-LVRPDFLICSFYQI  307 (603)
Q Consensus       238 ~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~----~~~m~~l-dls-~~~~Dflv~S~hK~  307 (603)
                           +++++.++..+|.||.++|.+   .+ ++|+++|+++++|.++..    +....++ ++. ..+.|+++.|++|+
T Consensus       163 -----~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~  237 (386)
T 1u08_A          163 -----RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT  237 (386)
T ss_dssp             -----TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHH
T ss_pred             -----cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhh
Confidence                 689999999999999999863   33 468999999999999865    3210122 221 24789999999999


Q ss_pred             CCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454          308 FGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR  385 (603)
Q Consensus       308 fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~  385 (603)
                      ||  +.|  +|++++++++++.+.+..                                .   ....+.+.....++.  
T Consensus       238 ~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~~~~~~~~~a~~--  278 (386)
T 1u08_A          238 YH--MTGWKVGYCVAPAPISAEIRKVH--------------------------------Q---YLTFSVNTPAQLALA--  278 (386)
T ss_dssp             TT--CGGGCCEEEECCHHHHHHHHHHH--------------------------------H---HHTSSCCHHHHHHHH--
T ss_pred             cC--CcccceEEEEcCHHHHHHHHHHH--------------------------------H---hhccCCChHHHHHHH--
Confidence            99  568  899998876544333100                                0   011223333322222  


Q ss_pred             hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce
Q 007454          386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL  465 (603)
Q Consensus       386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl  465 (603)
                                                            .+++.. .-.++.+.++.+.+.++|.+.|.++      |   
T Consensus       279 --------------------------------------~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------g---  310 (386)
T 1u08_A          279 --------------------------------------DMLRAE-PEHYLALPDFYRQKRDILVNALNES------R---  310 (386)
T ss_dssp             --------------------------------------HHHHHC-THHHHTHHHHHHHHHHHHHHHTTSS------S---
T ss_pred             --------------------------------------HHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHC------C---
Confidence                                                  344432 1136677888889999999999875      2   


Q ss_pred             EEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          466 VKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       466 v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      ++++.|.    .+..+.+.+++..+  ++.. +.++|++++||.++.|..|...                          
T Consensus       311 ~~~~~~~----~g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~--------------------------  358 (386)
T 1u08_A          311 LEILPCE----GTYFLLVDYSAVST--LDDVEFCQWLTQEHGVAAIPLSVFCAD--------------------------  358 (386)
T ss_dssp             CEECCCC----BSSEEEEECTTTCC--SCHHHHHHHHHHHSCEECEEGGGGCSS--------------------------
T ss_pred             CeecCCC----ceEEEEEecCCCCC--CCHHHHHHHHHHhCCEEEeCchHhCCC--------------------------
Confidence            5566542    36688888865310  2233 4455777899999987544321                          


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                            ....+.+|+|++  ++.+||+++++.|++|
T Consensus       359 ------~~~~~~iRis~~--~~~~~i~~~~~~l~~~  386 (386)
T 1u08_A          359 ------PFPHKLIRLCFA--KKESTLLAAAERLRQL  386 (386)
T ss_dssp             ------CCCSCEEEEECC--SCHHHHHHHHHHHTTC
T ss_pred             ------CCCCCEEEEEEc--CCHHHHHHHHHHHhhC
Confidence                  012368999998  4899999999988653

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.74  E-value=1.7e-17  Score=174.36  Aligned_cols=312  Identities=11%  Similarity=0.092  Sum_probs=192.1

Q ss_pred             CCceeeecCCCCC-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454          107 SNHTCLDYFGIGL-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-  184 (603)
Q Consensus       107 ~~~vYLDyaa~tl-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-  184 (603)
                      .+.++|+.+..++ .++.+++++.+.+...            .+    .+..+           ....+.|+.|+++++ 
T Consensus        29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------~~----~y~~~-----------~~~~~l~~~la~~~~~   81 (370)
T 2z61_A           29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG------------KT----HYTDS-----------RGILELREKISELYKD   81 (370)
T ss_dssp             CCCEECCCCSCSSCCCHHHHHHHHHHHHTT------------CC----SCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHHcC------------cc----CCCCC-----------CCCHHHHHHHHHHHHH
Confidence            4578999887764 5777888776543210            00    00100           012367788888875 


Q ss_pred             -----CCCCcEEEeccC-chHHHHHHHHHHcCCEEEEEeccCCc--------c------ccCHHHHHHHHhhcCCCCCCe
Q 007454          185 -----ISENDYVYDYES-EAVEAMIRTSEKRGARVMSAEFSWPR--------L------RINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       185 -----a~~~e~vf~~es-~sV~~~~~~a~~~Ga~V~~~~~~~~~--------g------~i~~~~L~~~l~~~~~~~~~t  244 (603)
                           +++++++++... +++..++..+.+.|.+|......++.        |      .++.++|++.|..      ++
T Consensus        82 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~d~~~l~~~l~~------~~  155 (370)
T 2z61_A           82 KYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCDFTVESLEEALSD------KT  155 (370)
T ss_dssp             HSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSSHHHHHHHCCS------SE
T ss_pred             HhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeCCCHHHHHHhccc------Cc
Confidence                 677888776532 23333333333334344333222210        0      0578899888853      58


Q ss_pred             eEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCC-CCCCCC----CCCCcEEEEcccccCCCCCCc--eEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDM-DSFGLS----LVRPDFLICSFYQIFGENPSG--FGC  317 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m-~~ldls----~~~~Dflv~S~hK~fG~~P~G--~G~  317 (603)
                      ++++++..+|.||.++|.++.++|+++|+++++|.++....-- .+.++.    ..+.|+++.|+||+||  +.|  +|+
T Consensus       156 ~~v~~~~p~nptG~~~~~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~  233 (370)
T 2z61_A          156 KAIIINSPSNPLGEVIDREIYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA--MTGWRIGY  233 (370)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT--CGGGCCEE
T ss_pred             eEEEEcCCCCCcCcccCHHHHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC--CccceEEE
Confidence            8999999999999999999335899999999999998764300 022332    2367999999999999  568  899


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      +++++++.+.+.+...                                   ...++.|.....++.              
T Consensus       234 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~a~~--------------  264 (370)
T 2z61_A          234 VISNDEIIEAILKLQQ-----------------------------------NLFISAPTISQYAAL--------------  264 (370)
T ss_dssp             EECCHHHHHHHHHHHH-----------------------------------HHTSSSCHHHHHHHG--------------
T ss_pred             EEECHHHHHHHHHHHh-----------------------------------hcccCCCHHHHHHHH--------------
Confidence            9988765443331100                                   012234444433332              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                ++++.+..-.++.+.++.+.+.++|.+.|.++      |   +++++|.    .
T Consensus       265 --------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~  305 (370)
T 2z61_A          265 --------------------------KAFEKETEREINSMIKEFDRRRRLVLKYVKDF------G---WEVNNPI----G  305 (370)
T ss_dssp             --------------------------GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T---CBCCCCC----B
T ss_pred             --------------------------HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc------C---CeecCCC----c
Confidence                                      23332001135667778888899999999875      2   3334432    2


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      +..+.+.+++ +    ...+.++|++++||.++.|..|..                                  ...+.+
T Consensus       306 ~~~~~~~~~~-~----~~~~~~~l~~~~gi~v~~g~~f~~----------------------------------~~~~~~  346 (370)
T 2z61_A          306 AYYVFPNIGE-D----GREFAYKLLKEKFVALTPGIGFGS----------------------------------KGKNYI  346 (370)
T ss_dssp             TTEECCBCSS-C----HHHHHHHHHHHHCEECEEGGGGCG----------------------------------GGSSBE
T ss_pred             ceEEEEecCC-C----HHHHHHHHHHhCCEEEeCchhhCC----------------------------------CCCCEE
Confidence            4444455543 2    123455666678999998866531                                  012589


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      |+|++  ++.+||+++++.|+++++
T Consensus       347 Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          347 RISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             EEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             EEEEe--CCHHHHHHHHHHHHHHHh
Confidence            99999  799999999999998864

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.74  E-value=7.1e-17  Score=171.71  Aligned_cols=321  Identities=12%  Similarity=0.065  Sum_probs=201.0

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++..++++.+++++.+.+...                 +..+++.+.+..+.. ...+.+.+|+.+++++|+++++++++
T Consensus        32 ~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~   94 (417)
T 3n0l_A           32 ASENFTLPEVMEVMGSILTNK-----------------YAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPN   94 (417)
T ss_dssp             TTCCCCCHHHHHHHTBGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred             cccCCCCHHHHHHHhhhhhcc-----------------ccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEec
Confidence            445567999999987654211                 112445444333332 24566679999999999987777665


Q ss_pred             ccCchHHHHHHHHHHcCCE--------------------------EEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          194 YESEAVEAMIRTSEKRGAR--------------------------VMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       194 ~es~sV~~~~~~a~~~Ga~--------------------------V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      ..++++..++..+.+.|.+                          +..++++ .++.++.++|++.|...     ++++|
T Consensus        95 sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~v  168 (417)
T 3n0l_A           95 SGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE-LDGRIDYEKVREIAKKE-----KPKLI  168 (417)
T ss_dssp             SHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC-TTSSCCHHHHHHHHHHH-----CCSEE
T ss_pred             cHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC-CCCCcCHHHHHHHHHhc-----CCeEE
Confidence            4444443333333333333                          3334444 45668999999999731     57788


Q ss_pred             EEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC-
Q 007454          248 VFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK-  322 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk-  322 (603)
                      ++...+  +|...|++.+ ++|+++|+++++|.+|..+..   ..+..+.  .+|++++|+||+|++ |.| |+++.++ 
T Consensus       169 ~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g-~~~-G~~~~~~~  242 (417)
T 3n0l_A          169 VCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRG-PRG-GIIMTNDE  242 (417)
T ss_dssp             EECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCS-CSC-EEEEESCH
T ss_pred             EECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCC-CCe-eEEEECCH
Confidence            766555  4999999866 589999999999999754430   0123333  579999999998865 765 8888873 


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      ++.+.+.+....                                  ...|+++...++++.                   
T Consensus       243 ~~~~~~~~~~~~----------------------------------~~~~~~~~~~~aa~~-------------------  269 (417)
T 3n0l_A          243 ELAKKINSAIFP----------------------------------GIQGGPLMHVIAAKA-------------------  269 (417)
T ss_dssp             HHHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH-------------------
T ss_pred             HHHHHHhhhhCC----------------------------------cccCCcHHHHHHHHH-------------------
Confidence            443333211000                                  013455555555443                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           .+++....-+++.+.++.+.++++|.+.|.++      |   ++++.+   ...+..+.
T Consensus       270 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~---~~~~~~~~  316 (417)
T 3n0l_A          270 ---------------------VGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR------K---FKLVSD---GTDNHLVL  316 (417)
T ss_dssp             ---------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSSSEEE
T ss_pred             ---------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC------C---ceeccC---CCCceEEE
Confidence                                 34444322346778888888999999999873      2   344432   12355666


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      +.+.+.   .++...+.+++.++||.++.+..  +....                            .......+|+++.
T Consensus       317 ~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~--~~~~~----------------------------~~~~~~~~ri~~~  363 (417)
T 3n0l_A          317 MSFLDR---EFSGKDADLALGNAGITANKNTV--PGEIR----------------------------SPFITSGLRLGTP  363 (417)
T ss_dssp             EECTTS---SSCHHHHHHHHHHTTEECEECCC--TTCCS----------------------------CTTTCSEEEEECH
T ss_pred             EEcccC---CCCHHHHHHHHHHcCeEEecccc--CCCCc----------------------------ccCCCCeeEecCH
Confidence            666432   13456777888889999986532  11000                            0112257999987


Q ss_pred             CCC----CHHHHHHHHHHHHHHHhh
Q 007454          563 YLA----NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       563 ~~t----t~eDVd~l~~~l~~~l~~  583 (603)
                      .++    +.+||+++++.|++.+..
T Consensus       364 ~~~~~~~~~~~i~~~~~~l~~~l~~  388 (417)
T 3n0l_A          364 ALTARGFKEKEMEIVSNYIADILDD  388 (417)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            654    589999999999998865

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.73  E-value=5.4e-17  Score=172.60  Aligned_cols=321  Identities=12%  Similarity=0.097  Sum_probs=194.1

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEE
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVY  192 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf  192 (603)
                      .++..+.++.+++++.+.+...                 +..+++++.+..+.. .....+.+|+.+++++|++++++++
T Consensus        36 ~~~~n~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~   98 (420)
T 3gbx_A           36 IASENYTSPRVMQAQGSQLTNK-----------------YAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP   98 (420)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGGC-----------------CC--------------CHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             eccCCCCCHHHHHHHHHHHhcc-----------------cccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe
Confidence            3445567999999987654211                 112445444332222 2456677999999999998777756


Q ss_pred             eccCchHHHHHHHHHHcCCEEEE--------------------------EeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454          193 DYESEAVEAMIRTSEKRGARVMS--------------------------AEFSWPRLRINSEKLRKMVVSKGKKKKQRGL  246 (603)
Q Consensus       193 ~~es~sV~~~~~~a~~~Ga~V~~--------------------------~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L  246 (603)
                      +..++++..++..+.+.|.+|..                          .+++ .++.++.++|+++|..+     ++++
T Consensus        99 ~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~d~~~l~~~i~~~-----~~~~  172 (420)
T 3gbx_A           99 HSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID-ESGKIDYDEMAKLAKEH-----KPKM  172 (420)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC-TTCSCCHHHHHHHHHHH-----CCSE
T ss_pred             cCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC-ccCCcCHHHHHHHHHhc-----CCeE
Confidence            54444444433333334444433                          2333 34568999999999752     4788


Q ss_pred             EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      |.+...+|  |...|++.+ ++|+++|+++++|.+|..+.   ...+..+.  .+|++++|+||+||+ |.| |+++.++
T Consensus       173 v~~~~~~~--~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g-~~g-g~~~~~~  246 (420)
T 3gbx_A          173 IIGGFSAY--SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAG-PRG-GLILAKG  246 (420)
T ss_dssp             EEECCTTC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCS-CSC-EEEEESS
T ss_pred             EEEecCcc--CCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCC-CCc-eEEEEcC
Confidence            87765433  678999865 58999999999999975432   00122333  389999999999954 777 8888877


Q ss_pred             C---CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          323 S---TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       323 ~---~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      .   ....+.+..+.                                  .-.|+++...+++++                
T Consensus       247 ~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~a~~----------------  276 (420)
T 3gbx_A          247 GDEELYKKLNSAVFP----------------------------------SAQGGPLMHVIAGKA----------------  276 (420)
T ss_dssp             CCHHHHHHHHHHHC--------------------------------------CCCCHHHHHHHH----------------
T ss_pred             CcHHHHHHhhhhcCC----------------------------------CCCCCcchhHHHHHH----------------
Confidence            3   22222110000                                  013445555554443                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              .++.....-+++.+.++.+.+.++|.+.|.++      |   ++++.+   ...++
T Consensus       277 ------------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~---~~~~~  320 (420)
T 3gbx_A          277 ------------------------VALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR------G---YKVVSG---GTENH  320 (420)
T ss_dssp             ------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSSS
T ss_pred             ------------------------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc------C---CeeccC---CCCCe
Confidence                                    23332212245777888899999999999874      2   455443   13467


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc-cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL-HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~-C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      ++.+.+.+.   .+....+.+++.++||.++.+.. .+.+                               .......||
T Consensus       321 ~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~-------------------------------~~~~~~~iR  366 (420)
T 3gbx_A          321 LFLLDLVDK---NLTGKEADAALGRANITVNKNSVPNDPK-------------------------------SPFVTSGIR  366 (420)
T ss_dssp             EEEEECGGG---TCCHHHHHHHHHHTTEECEEECCTTCSS-------------------------------CTTTCSEEE
T ss_pred             EEEEEcCCC---CCCHHHHHHHHHHCCcEeccccCCCCcc-------------------------------ccCCCcceE
Confidence            777777542   13456677777889999886321 0000                               001123599


Q ss_pred             EecCCCCC----HHHHHHHHHHHHHHHhh
Q 007454          559 ASLGYLAN----FEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Slg~~tt----~eDVd~l~~~l~~~l~~  583 (603)
                      +|+...++    .+||+++++.|++.++.
T Consensus       367 i~~~~~~~~~~~~~~i~~~~~~l~~~l~~  395 (420)
T 3gbx_A          367 IGSPAVTRRGFKEAEVKELAGWMCDVLDN  395 (420)
T ss_dssp             EECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EecchhcccCCCHHHHHHHHHHHHHHHhC
Confidence            99987754    89999999999998866

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.73  E-value=1.7e-16  Score=170.41  Aligned_cols=144  Identities=12%  Similarity=0.033  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchHHH-HHHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAVEA-MIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV~~-~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....++.|++|++++|++ +.+++..                        .+.+... +...++..|+++..++.+    
T Consensus        61 ~~~~~~l~~~ia~~~g~~-~~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~----  135 (404)
T 1e5e_A           61 NPTVSNLEGKIAFLEKTE-ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA----  135 (404)
T ss_dssp             CHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred             ChHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC----
Confidence            355678999999999985 4444421                        1112211 112456678888887753    


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHh-CCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQE-NDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e-~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                        +.++|++.|..      +|++|.+...+|.||.++|++.+ ++|++ +|++|++|.++..+..-.++   .+++|+++
T Consensus       136 --d~~~l~~~i~~------~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~---~~~~di~~  204 (404)
T 1e5e_A          136 --IPGEVKKHMKP------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITNPV---DFGVDVVV  204 (404)
T ss_dssp             --STTHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGG---GGTCSEEE
T ss_pred             --CHHHHHHhcCC------CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCCcc---ccCCEEEE
Confidence              56788888753      69999999999999999999865 58999 99999999999877511133   35899999


Q ss_pred             EcccccCCCCCCc--eEEEEEeCCCCc-CcC
Q 007454          302 CSFYQIFGENPSG--FGCLFVKKSTVP-ILV  329 (603)
Q Consensus       302 ~S~hK~fG~~P~G--~G~L~vkk~~~~-~L~  329 (603)
                      .|++|+||. |.+  .|+++++++.+. .+.
T Consensus       205 ~S~sK~~~~-~g~ri~G~~~~~~~~~~~~l~  234 (404)
T 1e5e_A          205 HSATKYING-HTDVVAGLICGKADLLQQIRM  234 (404)
T ss_dssp             EETTTTTTC-SSCCCCEEEEECHHHHHHHHH
T ss_pred             EcCccccCC-CCCCeEEEEEECHHHHHHHHH
Confidence            999999986 655  599999887654 443

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.73  E-value=3.2e-17  Score=176.21  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEeccCchHHH------------------------HHHHHHHcCCEEEEEeccCCccccCH
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYESEAVEA------------------------MIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~es~sV~~------------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ..+.|++|++++|++ +.++|...++++..                        +...+++.|+++..++.+      +.
T Consensus        69 ~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------d~  141 (403)
T 3cog_A           69 RNCLEKAVAALDGAK-YCLAFASGLAATVTITHLLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS------KI  141 (403)
T ss_dssp             HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT------SH
T ss_pred             HHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC------CH
Confidence            457888999999876 55555322222211                        222334567777777653      67


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC-cEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND-WHILIDACALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g-~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      ++|++.|..      +|++|.+...+|.||.++|++.+ ++|+++| +++++|.++..+....+++   +++|+++.|++
T Consensus       142 ~~l~~~i~~------~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~---~~~div~~S~s  212 (403)
T 3cog_A          142 KLLEAAITP------ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLA---LGADISMYSAT  212 (403)
T ss_dssp             HHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTT---TTCSEEEEETT
T ss_pred             HHHHHhcCc------CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccc---cCCeEEEEcCh
Confidence            888888853      68999999999999999999966 5899999 9999999998875213554   57999999999


Q ss_pred             ccCCCCCCce--EEEEEeC-CCCcCc
Q 007454          306 QIFGENPSGF--GCLFVKK-STVPIL  328 (603)
Q Consensus       306 K~fG~~P~G~--G~L~vkk-~~~~~L  328 (603)
                      |+||+ |.|+  |++++++ ++.+.+
T Consensus       213 K~~~g-~~~~~~G~v~~~~~~l~~~l  237 (403)
T 3cog_A          213 KYMNG-HSDVVMGLVSVNCESLHNRL  237 (403)
T ss_dssp             TTTTC-SSCCCCEEEEECCHHHHHHH
T ss_pred             hhccC-CCCCeEEEEEECcHHHHHHH
Confidence            99987 7774  9998864 443333

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.73  E-value=5.1e-17  Score=174.09  Aligned_cols=326  Identities=12%  Similarity=0.020  Sum_probs=181.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec-cCchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY-ESEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ++.+++++++++++|++  +.+|.. -++++                      ......++..|++++.++++..++.++
T Consensus        42 ~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  119 (418)
T 2c81_A           42 SMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEADTYCID  119 (418)
T ss_dssp             CHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             HHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcC
Confidence            45678889999999986  333321 11111                      112334556799999998874467899


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc-
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF-  304 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~-  304 (603)
                      .++|++.|..      ++++|.+   +|.||...|++.+ ++|+++|++|++|+++..+.....-.+..+ .|++++|+ 
T Consensus       120 ~~~l~~~i~~------~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s  189 (418)
T 2c81_A          120 PQLIKSAITD------KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQ  189 (418)
T ss_dssp             HHHHGGGCCT------TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECC
T ss_pred             HHHHHHhhCC------CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEEecc
Confidence            9999988853      5788775   5689999999855 589999999999999988751000011112 35666666 


Q ss_pred             -cccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc--cCCCChhhhh
Q 007454          305 -YQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV--AATNTFSGPM  380 (603)
Q Consensus       305 -hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e--~GT~n~~gi~  380 (603)
                       ||+||  +...|+++.+ +++.+.+++...+|....  ...  .   .     .      +..  ++  .||.++.   
T Consensus       190 ~~K~~~--~g~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~--~---~-----~------~~~--~~~~~~~~~~~---  244 (418)
T 2c81_A          190 QGKVLT--AGEGGIIVTKNPRLFELIQQLRADSRVYC--DDS--S---E-----L------MHG--DMQLVKKGDIQ---  244 (418)
T ss_dssp             TTSSSC--SSSCEEEEESCHHHHHHHHHHHBTTEEEC--SCG--G---G-----C------CTT--CBSEEECCSSC---
T ss_pred             CCcccC--CCCeEEEEECCHHHHHHHHHHHHhCcccc--ccc--c---c-----c------ccc--hhhcccccccc---
Confidence             99999  5234555554 344444443222222110  000  0   0     0      000  12  2332222   


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      |+..         .+..+                        .+++.....-+++.+.++.+.+.++|.+.|.+++    
T Consensus       245 g~~~---------~~~~~------------------------~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~----  287 (418)
T 2c81_A          245 GSNY---------CLSEF------------------------QSAILLDQLQELDDKNAIREKNAMFLNDALSKID----  287 (418)
T ss_dssp             CCBC---------CCCHH------------------------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST----
T ss_pred             CcCC---------CcCHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----
Confidence            2210         00000                        0233222222578888888999999999998753    


Q ss_pred             CCCceEEEeCCCCC-CCCC-CEEEEEEccCCCCccCHHHHHHHHhcC-CcE---EeeCcccCccC--CchhhhhhH----
Q 007454          461 EGNALVKIYGPKIR-FDRG-PALAFNVFDWKREKIEPVLVQKLADRE-NIS---LSYGSLHHIWF--SDKYQKEKD----  528 (603)
Q Consensus       461 ~g~plv~Iygp~~~-~~rg-~ivsFnv~~~~g~~v~~~~V~~Lad~~-gI~---lr~G~~C~~~~--~~~~~~~~~----  528 (603)
                          .++++++... .... .+++|.+++....-++...+.+.+.++ ||.   ++.|+.|....  .... ....    
T Consensus       288 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~-~~~~~~~~  362 (418)
T 2c81_A          288 ----GIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPW-TKNRYLKS  362 (418)
T ss_dssp             ----TEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGG-GCTTSCHH
T ss_pred             ----CcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccc-cccccccc
Confidence                3788865321 1123 588888873100012334444444455 999   99987542110  0000 0000    


Q ss_pred             H--HHHhh--hcccccccccccccCCCCCCCEEEEecCCCC-CHHHHHHHHHHHHHHHhh
Q 007454          529 N--VLEKT--DREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       529 ~--~l~~~--~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~t-t~eDVd~l~~~l~~~l~~  583 (603)
                      .  .++..  ..|.     +.    .....++||+|++.++ |.|||++++++|++++..
T Consensus       363 ~~~~~~~~~~~~~~-----~~----~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~  413 (418)
T 2c81_A          363 VRKTEAYWRGLHYP-----VS----ERASGQSIVIHHAILLAEPSHLSLLVDAVAELARK  413 (418)
T ss_dssp             HHCCHHHHHTCCCH-----HH----HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccCCCh-----HH----HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHh
Confidence            0  00000  0000     00    0011258999999999 999999999999998753

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.72  E-value=5e-16  Score=161.97  Aligned_cols=266  Identities=12%  Similarity=0.098  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-h-----------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-A-----------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMV  234 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-s-----------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l  234 (603)
                      .+.|++|++++|+++++++|+.... +                 .......++..|+++..+++++ .+.++.++|++.+
T Consensus        64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~l~~~l  142 (361)
T 3ftb_A           64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLFEKILIIVPSYAEYEINAKKHGVSVVFSYLDE-NMCIDYEDIISKI  142 (361)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTCSEEEEEESCCTHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHcCcEEEecCChHHHHHHHHHcCCeEEEeecCc-ccCCCHHHHHHhc
Confidence            5789999999999999998764321 1                 1223445677899999999884 5677889999888


Q ss_pred             hhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCC---CCCCCC-CCCCCcEEEEcccc
Q 007454          235 VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKD---MDSFGL-SLVRPDFLICSFYQ  306 (603)
Q Consensus       235 ~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~---m~~ldl-s~~~~Dflv~S~hK  306 (603)
                      .      + +++++++..+|.||.++|.+.+    ++|+++|+++++|.++.....   ...+.+ ...+.++++.|++|
T Consensus       143 ~------~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK  215 (361)
T 3ftb_A          143 D------D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTK  215 (361)
T ss_dssp             T------T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSS
T ss_pred             c------C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChh
Confidence            5      2 7899999999999999997643    356799999999998763220   011221 12334577889999


Q ss_pred             cCCCCCCc--eEEEE-EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhh
Q 007454          307 IFGENPSG--FGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE  383 (603)
Q Consensus       307 ~fG~~P~G--~G~L~-vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~  383 (603)
                      .||  +.|  +|+++ .+++..+.+...                                     ....++|..+..++.
T Consensus       216 ~~~--~~G~r~g~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~  256 (361)
T 3ftb_A          216 FFA--MPGIRFGYGITNNKEIAAKIKAK-------------------------------------QNPWNINCFAEMAAI  256 (361)
T ss_dssp             TTS--CGGGCCEEEEESCHHHHHHHHTT-------------------------------------SCTTCSCHHHHHHHH
T ss_pred             hcC--CCCcceeEEEeCCHHHHHHHHhh-------------------------------------CCCCCCCHHHHHHHH
Confidence            998  445  57776 333333222210                                     012344554444332


Q ss_pred             hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 007454          384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN  463 (603)
Q Consensus       384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~  463 (603)
                                                              ++++.  .-.++.+.++.+.+.++|.+.|.+++       
T Consensus       257 ----------------------------------------~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~-------  287 (361)
T 3ftb_A          257 ----------------------------------------NCLKD--TNYIEESLLWIKKERKRFIEELNKIG-------  287 (361)
T ss_dssp             ----------------------------------------HTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSS-------
T ss_pred             ----------------------------------------HHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence                                                    23321  11356778888899999999998752       


Q ss_pred             ceEE-EeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454          464 ALVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS  542 (603)
Q Consensus       464 plv~-Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (603)
                       .+. ++.+     .++.+.|.+++.     +...+.+.+.++||.++.|..|..                         
T Consensus       288 -~~~~~~~~-----~~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~-------------------------  331 (361)
T 3ftb_A          288 -FIKRVFSP-----HANFVLCRLENI-----SGEKLYDSLLKEDIVIRRCCNFIG-------------------------  331 (361)
T ss_dssp             -SEEEEECC-----SSSEEEEEESSS-----CHHHHHHHHHTTTEECEECTTSTT-------------------------
T ss_pred             -CCceecCC-----CCeEEEEEcCCC-----CHHHHHHHHHHCCeEEeeCccCCC-------------------------
Confidence             266 6654     467888888763     233344444456999999877631                         


Q ss_pred             ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                               .+.+.||+|++   +.+|+++|+++|+++++
T Consensus       332 ---------~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          332 ---------LDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             ---------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence                     12369999987   99999999999998764

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.72  E-value=1.1e-16  Score=169.17  Aligned_cols=313  Identities=10%  Similarity=0.042  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHH----------------------HHHHHHHcCCEEEEEeccCCccccCH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEA----------------------MIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~----------------------~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ....+.|++|++++|++ ++++++.-++++..                      ....++..|++++.+++++.++.++.
T Consensus        38 ~~~~~l~~~la~~~~~~-~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~  116 (388)
T 1b9h_A           38 DEVNSFEREFAAHHGAA-HALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDP  116 (388)
T ss_dssp             SHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCH
T ss_pred             HHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCH
Confidence            34568899999999985 45544322222111                      23345667999999998754578999


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC-CcEEEEccc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR-PDFLICSFY  305 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~-~Dflv~S~h  305 (603)
                      ++|+++|..      ++++|+   .+|.||.+.|++.+ ++|+++|++|++|++|..|......++..++ +++.++|.|
T Consensus       117 ~~l~~~i~~------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~  187 (388)
T 1b9h_A          117 EAVAAAVTP------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNG  187 (388)
T ss_dssp             HHHHHHCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTT
T ss_pred             HHHHHhcCc------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCC
Confidence            999999853      578877   68899999999865 5899999999999999876511113444555 677777788


Q ss_pred             ccCCCCCCceEEEEEeCCCC---cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          306 QIFGENPSGFGCLFVKKSTV---PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~---~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      |++++ + ..|+++.++..+   ..+.....+|...    ..  +        .++       .  .+.||..-...++.
T Consensus       188 K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~--------~~~-------~--~~~g~~~~~~~~~~  242 (388)
T 1b9h_A          188 KLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPR----DD--R--------RYF-------H--KIAGSNMRLNEFSA  242 (388)
T ss_dssp             SSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCT----TC--S--------SCC-------C--CSCCCBCBCBHHHH
T ss_pred             CcccC-C-CeEEEEECCHHHHHHHHHHHHHhCCCCc----cC--c--------cce-------e--ecccccCCcCHHHH
Confidence            98873 4 458787777632   3232111112100    00  0        000       0  13455321221111


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEG  462 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g  462 (603)
                      +             .+.                        .++++     ++...++.+.+.++|.+.|.+++      
T Consensus       243 a-------------~~~------------------------~~~~~-----l~~~~~~~~~~~~~l~~~L~~~~------  274 (388)
T 1b9h_A          243 S-------------VLR------------------------AQLAR-----LDEQIAVRDERWTLLSRLLGAID------  274 (388)
T ss_dssp             H-------------HHH------------------------HHHTT-----HHHHHHHHHHHHHHHHHHHHTST------
T ss_pred             H-------------HHH------------------------HHHHH-----HHHHHHHHHHHHHHHHHHhccCC------
Confidence            1             000                        23332     44566677788999999998763      


Q ss_pred             CceEEEeCCCCC--CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCch-hhh------hhHHHHHh
Q 007454          463 NALVKIYGPKIR--FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDK-YQK------EKDNVLEK  533 (603)
Q Consensus       463 ~plv~Iygp~~~--~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~-~~~------~~~~~l~~  533 (603)
                        .++++++...  ...+.++.|.+++..+  .....+.+.+.++||.++.|+....  ..+ +..      .......+
T Consensus       275 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  348 (388)
T 1b9h_A          275 --GVVPQGGDVRADRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRAIY--RTDAFWELGAPDESVDAIARR  348 (388)
T ss_dssp             --TCEECCCCTTCCBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCCGG--GSHHHHHSSCCSSCHHHHHHT
T ss_pred             --CccccCCCcCCCccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCccc--cChHhHhcCCCcccccccccC
Confidence              2677765321  1236799999876311  1123344444468999998754110  000 000      00000000


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCC-CHHHHHHHHHHHHHHHhh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLA-NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~t-t~eDVd~l~~~l~~~l~~  583 (603)
                      +...            .....++||+|++..+ |.|||+++++.|++++++
T Consensus       349 ~~~~------------~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~  387 (388)
T 1b9h_A          349 CPNT------------DAISSDCVWLHHRVLLAGEPELHATAEIIADAVAR  387 (388)
T ss_dssp             CHHH------------HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CHHH------------HHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence            0000            0111258999999999 999999999999998753

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.72  E-value=1.3e-16  Score=167.54  Aligned_cols=298  Identities=12%  Similarity=0.042  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-Cc----------------------hHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-SE----------------------AVEAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~----------------------sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.|++|++++|.+  +.+|... ++                      ........++..|+++..++++ .++.++
T Consensus        38 ~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d  114 (374)
T 3uwc_A           38 AELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE-NGYVID  114 (374)
T ss_dssp             HHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC-TTSSBC
T ss_pred             hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC-CCCCcC
Confidence            34567888899998876  4443211 11                      1122334566789999999987 578889


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS  303 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S  303 (603)
                      .++|++.|..      +++++.   .+|.||.+.|++.+ ++|+++|+++++|+++..+.   .++....+  +|++++|
T Consensus       115 ~~~l~~~~~~------~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~---~~~~~~~~~~~d~~~~s  182 (374)
T 3uwc_A          115 PEKIEAAITD------KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILG---RINDKFVGSWGQFACFS  182 (374)
T ss_dssp             GGGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC---EETTEETTSSSSEEEEE
T ss_pred             HHHHHHhCCC------CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCc---eeCCeeccccccEEEEe
Confidence            9999888753      577777   67899999999966 58999999999999998875   24444444  7999999


Q ss_pred             cc--ccCCCCCCc-eEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          304 FY--QIFGENPSG-FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       304 ~h--K~fG~~P~G-~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      +|  |++|  |.| .|+++.++. ..+.+++...+|...      . +          .          ....+.++ .+
T Consensus       183 ~~~~K~l~--~~g~~g~~~~~~~~~~~~~~~~~~~~~~~------~-~----------~----------~~~~~~~~-~~  232 (374)
T 3uwc_A          183 LHPLKNLN--VWSDAGVIITHSDEYAEKLRLYRNHGLIN------R-D----------V----------CVEYGINC-RM  232 (374)
T ss_dssp             CSSSSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------T-T----------E----------ESSCCCBC-BC
T ss_pred             CCCCCcCC--ccceeEEEEeCCHHHHHHHHHHHhcCccc------c-C----------c----------cccccccC-CC
Confidence            99  9999  534 555555543 323333222222210      0 0          0          01111222 12


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      .++.                                        +++......+++.+.++.+.+.+++.+.|.++.   
T Consensus       233 ~~~~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---  269 (374)
T 3uwc_A          233 DTIQ----------------------------------------AVIANRLMNQLETITEKRRGIAHLYDQSFVDLS---  269 (374)
T ss_dssp             CHHH----------------------------------------HHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGT---
T ss_pred             CHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---
Confidence            2222                                        344444444678888999999999999998763   


Q ss_pred             CCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc----ccCccCCchhhhhhHHHHHhh
Q 007454          460 TEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS----LHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       460 ~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~----~C~~~~~~~~~~~~~~~l~~~  534 (603)
                           . +++..+.. ......+.|.+...     +...+.+.+.++||.++.|+    +|.+....            .
T Consensus       270 -----~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~------------~  326 (374)
T 3uwc_A          270 -----EFIDVPVRRE-GVYHVFHIYVLRVK-----YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKS------------L  326 (374)
T ss_dssp             -----TTEECCCCCT-TEECCCSSEEEEET-----THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGG------------G
T ss_pred             -----CeEEeccCCC-CCceeeEEEEEEcC-----CHHHHHHHHHHCCCccccCCCCccccChhhhh------------c
Confidence                 1 33332211 11122244555432     23445555567799999886    33222110            0


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      . ... ......   .....+.||+|++.++|.|||+++++.|++++++
T Consensus       327 ~-~~~-~~~~~~---~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          327 G-YQQ-GDFPMA---EKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             C-CCT-TSCHHH---HHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             C-Ccc-CCCccH---HHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            0 000 000000   0011258999999999999999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.72  E-value=2.8e-16  Score=168.56  Aligned_cols=289  Identities=12%  Similarity=0.012  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccC-chHHHH-------------------------HHHHHHcCCEEEEEeccC
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYES-EAVEAM-------------------------IRTSEKRGARVMSAEFSW  220 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~-------------------------~~~a~~~Ga~V~~~~~~~  220 (603)
                      .+.|++|+++++      +++++++++... +++..+                         ...++..|+++..++++.
T Consensus        85 ~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~  164 (437)
T 3g0t_A           85 PELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFE  164 (437)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGG
T ss_pred             HHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecC
Confidence            367788888877      567788775432 122222                         233344466666666652


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC----CCCCCCC--
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG----PKDMDSF--  290 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~----~~~m~~l--  290 (603)
                      .+..++.++|++.|..     .++++++++..+|.||.++|.+.    +++|+++|+++++|.++..    ++  .++  
T Consensus       165 ~~~~~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~--~~~~~  237 (437)
T 3g0t_A          165 YRGEKLREKLESYLQT-----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD--YSHPG  237 (437)
T ss_dssp             GCTTHHHHHHHHHHTT-----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC--CCSTT
T ss_pred             CCCccCHHHHHHHHhc-----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC--cCccc
Confidence            2335789999999942     36889999999999999999653    3478999999999999864    22  122  


Q ss_pred             ------CCCC-CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCc-CcC---CCCCCCceeccccccccccccccCCCCC
Q 007454          291 ------GLSL-VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVP-ILV---DNTSSGMVSLLPAKKQLWLTDEFSSCET  357 (603)
Q Consensus       291 ------dls~-~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~-~L~---p~~~gG~v~~~~~~~~~~~~~~~~~~~~  357 (603)
                            ++.. .+.++++.|++|+||  +.|  +|++++++++++ .+.   +...++...     ..+.  ..     .
T Consensus       238 ~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~-----~  303 (437)
T 3g0t_A          238 EPLYQPSVANYTDNYILALSSSKAFS--YAGQRIGVLMISGKLYEREYPDLEESFGRLRFG-----EALS--SS-----A  303 (437)
T ss_dssp             SSCCCCCGGGTCSCEEEEEESTTTTS--CGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHH-----HHHH--TT-----H
T ss_pred             ccchhhccCCCCCcEEEEEcCccCCC--CccceeEEEEECHHHhhhhhhcccccccccchh-----HHHH--HH-----H
Confidence                  4433 677899999999999  446  899999877654 321   111111000     0000  00     0


Q ss_pred             CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc--CHH
Q 007454          358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL--GLT  435 (603)
Q Consensus       358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i--Gl~  435 (603)
                             ..  ....+.|..+..++.                                        .+++.....  .++
T Consensus       304 -------~~--~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~  334 (437)
T 3g0t_A          304 -------LY--ALSSGATHSAQWGMA----------------------------------------AMLKACNDGEYNFR  334 (437)
T ss_dssp             -------HH--HHHSSSCHHHHHHHH----------------------------------------HHHHHHHTTSCCHH
T ss_pred             -------Hh--hhcCCCCHHHHHHHH----------------------------------------HHHhCcHhHHHHHH
Confidence                   00  123344554443332                                        355443321  178


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEe------CCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEE
Q 007454          436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIY------GPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISL  509 (603)
Q Consensus       436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iy------gp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~l  509 (603)
                      .+.++.+.+.+++.+.|.++      |   ++++      .|   ...+..+.+.+++.+     ...+.+.+.++||.+
T Consensus       335 ~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~l~~~L~~~gi~v  397 (437)
T 3g0t_A          335 DSVIEYGRKARIMKKMFLDN------G---FNIVYDKDGNEP---LADGFYFTVGYKGMD-----SSKLIEKFVRYGMCA  397 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT------T---EEESSCEETTEE---CCSSSEEEEEETTCC-----HHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHc------C---CEEeccccCCCC---CceeEEEEEecCCCC-----HHHHHHHHHHcCeEE
Confidence            88999999999999999876      1   6666      23   135677888887433     334444445679999


Q ss_pred             eeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          510 SYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       510 r~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      +.|..|...                                  ..+.+|+|+++. |.+||+++++.|++++.+
T Consensus       398 ~~~~~~~~~----------------------------------~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          398 ITLKTTGSK----------------------------------RNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             EESTTTTCC----------------------------------CTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             eeccccCCC----------------------------------CCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            988776321                                  125799999954 999999999999988753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.72  E-value=1.3e-15  Score=161.10  Aligned_cols=303  Identities=12%  Similarity=0.141  Sum_probs=197.8

Q ss_pred             CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||++++.      ..++.+++++.+.+....                 +..   ..  +   .....++.+++++
T Consensus        34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----------------~~~---~~--~---~~~~~~~l~~~la   88 (392)
T 3ruy_A           34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVT-----------------LTS---RA--F---HSDQLGPWYEKVA   88 (392)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCS-----------------CCC---TT--S---EETTHHHHHHHHH
T ss_pred             CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcc-----------------ccc---cc--c---CCHHHHHHHHHHH
Confidence            457799998743      247888888776433210                 000   00  0   1234568899999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHHc----------CCEEEEEeccCCc------------------------c--
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEKR----------GARVMSAEFSWPR------------------------L--  223 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~~----------Ga~V~~~~~~~~~------------------------g--  223 (603)
                      +++|  +++++|... ++++...+..+...          |.+|...+..+..                        .  
T Consensus        89 ~~~g--~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (392)
T 3ruy_A           89 KLTN--KEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIV  166 (392)
T ss_dssp             HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEE
T ss_pred             HhcC--CCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCee
Confidence            9998  667777654 34555555555433          4566654432210                        0  


Q ss_pred             --ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCC
Q 007454          224 --RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLS  293 (603)
Q Consensus       224 --~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls  293 (603)
                        ..+.++|+++|.      +++++|.+...+|.||.++|    ++.+ ++|+++|+++++|.++. .+..  +..++..
T Consensus       167 ~~~~d~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~  240 (392)
T 3ruy_A          167 IPYGDLEALKAAIT------PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWD  240 (392)
T ss_dssp             ECTTCHHHHHHHCC------TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             eCcccHHHHHHHhc------cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhcc
Confidence              016888988886      36999999999999999999    9865 58999999999999985 2221  1223333


Q ss_pred             CCCCcEEEEcccccCCCCC--CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          294 LVRPDFLICSFYQIFGENP--SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P--~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      ...+|++++|  |.++  +  ..+|+++++++.++.+.+...++                                   .
T Consensus       241 ~~~~d~~~~S--K~l~--gG~~~~G~~~~~~~~~~~~~~~~~~~-----------------------------------~  281 (392)
T 3ruy_A          241 NVTPDMYILG--KALG--GGVFPISCAAANRDILGVFEPGSHGS-----------------------------------T  281 (392)
T ss_dssp             TCCCSEEEEC--GGGG--TTTSCCEEEEECHHHHTTCCTTSSCC-----------------------------------S
T ss_pred             CCCCCEEEEc--hhhh--CChhhhEEEEECHHHHhhhccCCcCC-----------------------------------C
Confidence            4568999887  9877  3  23899999887665554321111                                   1


Q ss_pred             CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                      -+.|..+.+++.                                        ++++.+..   +.+.++.+.+.++|.+.
T Consensus       282 ~~~~~~~~~a~~----------------------------------------~~l~~~~~---~~~~~~~~~~~~~l~~~  318 (392)
T 3ruy_A          282 FGGNPLACAVSI----------------------------------------AALEVLEE---EKLTERSLQLGEKLVGQ  318 (392)
T ss_dssp             STTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHH----------------------------------------HHHHHHHh---hhHHHHHHHHHHHHHHH
Confidence            123333333322                                        46665543   56778889999999999


Q ss_pred             HhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          452 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       452 L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      |.++.+      +.+....     ..+.++.|.+++ ++    ..++++| .++||.++.|.                  
T Consensus       319 L~~~~~------~~~~~~~-----~~g~~~~~~~~~-~~----~~l~~~l-~~~gi~v~~~~------------------  363 (392)
T 3ruy_A          319 LKEIDN------PMITEVR-----GKGLFIGIELNE-PA----RPYCEQL-KAAGLLCKETH------------------  363 (392)
T ss_dssp             HTTCCC------TTEEEEE-----EETTEEEEEESS-CS----HHHHHHH-HTTTEECCCBT------------------
T ss_pred             HHHhcC------CCceEEE-----eeeeEEEEEEcc-hH----HHHHHHH-HHCCcEEecCC------------------
Confidence            988732      3343332     247889998865 32    2344444 47899887431                  


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                            .+.||+|+++.+|.+|++++++.|++++
T Consensus       364 ----------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l  391 (392)
T 3ruy_A          364 ----------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL  391 (392)
T ss_dssp             ----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence                                  2589999999999999999999999876

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.72  E-value=8.5e-17  Score=170.73  Aligned_cols=305  Identities=15%  Similarity=0.117  Sum_probs=193.4

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--  183 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--  183 (603)
                      ++.++|+.+... +.++.+.+++.+.+....                       .  .|+..  ....+.|+.|++++  
T Consensus        41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----------------------~--~y~~~--~g~~~lr~~la~~~~~   93 (389)
T 1o4s_A           41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-----------------------V--KYTDP--RGIYELREGIAKRIGE   93 (389)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-----------------------C--CCCCT--TCCHHHHHHHHHHHHH
T ss_pred             CCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-----------------------C--CCCCC--CCCHHHHHHHHHHHHH
Confidence            457888877665 346778888765432100                       0  00000  01236777777777  


Q ss_pred             --CC--CCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhh
Q 007454          184 --NI--SENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVS  236 (603)
Q Consensus       184 --na--~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~  236 (603)
                        |+  ++++++++... +++.                     .....++..|+++..++.++. +..++.++|++.|..
T Consensus        94 ~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~  173 (389)
T 1o4s_A           94 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG  173 (389)
T ss_dssp             HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred             HhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence              65  56788764321 1111                     123345567899998888632 346899999998853


Q ss_pred             cCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCC--CCCCCC----CCCcEEEEcccc
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMD--SFGLSL----VRPDFLICSFYQ  306 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~--~ldls~----~~~Dflv~S~hK  306 (603)
                            ++++|+++..+|.||.++|   ++.+ ++|+++|+++++|.++..... .  ..++..    .+.|+++.|++|
T Consensus       174 ------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~-~g~~~~~~~~~~~~~~~i~~~s~sK  246 (389)
T 1o4s_A          174 ------KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVY-TDEFTSILDVSEGFDRIVYINGFSK  246 (389)
T ss_dssp             ------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBC-SSCCCCHHHHCSSSTTEEEEEESTT
T ss_pred             ------CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCHhhcCCCCCcEEEEeechh
Confidence                  5889999999999999999   5544 578999999999999876531 1  122221    468999999999


Q ss_pred             cCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhh
Q 007454          307 IFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEM  384 (603)
Q Consensus       307 ~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~  384 (603)
                      +||  +.|  +|++++++++++.+.+...+                                  ...++ +..+..    
T Consensus       247 ~~~--~~G~r~G~l~~~~~~~~~l~~~~~~----------------------------------~~~~~-~~~~~~----  285 (389)
T 1o4s_A          247 SHS--MTGWRVGYLISSEKVATAVSKIQSH----------------------------------TTSCI-NTVAQY----  285 (389)
T ss_dssp             TTT--CGGGCCEEEECCHHHHHHHHHHHHH----------------------------------HTCSC-CHHHHH----
T ss_pred             hcC--CcccceEEEEeCHHHHHHHHHHhhh----------------------------------cccCC-CHHHHH----
Confidence            999  568  89999877654333311000                                  00111 211111    


Q ss_pred             hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                             .++..++. +++.+.++.+.+.++|.+.|.++      |  
T Consensus       286 ---------------------------------------a~~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~------g--  317 (389)
T 1o4s_A          286 ---------------------------------------AALKALEV-DNSYMVQTFKERKNFVVERLKKM------G--  317 (389)
T ss_dssp             ---------------------------------------HHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred             ---------------------------------------HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHhc------C--
Confidence                                                   12222222 47888889999999999999875      2  


Q ss_pred             eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                       ++++.|.    .+..+.+.++ .+    ..++.++|++++||.++.|..|..                           
T Consensus       318 -~~~~~~~----~~~~~~~~~~-~~----~~~l~~~l~~~~gi~v~~g~~f~~---------------------------  360 (389)
T 1o4s_A          318 -VKFVEPE----GAFYLFFKVR-GD----DVKFCERLLEEKKVALVPGSAFLK---------------------------  360 (389)
T ss_dssp             -CCCCCCS----BSSEEEEECS-SC----HHHHHHHHHHHHCEECEEGGGGTC---------------------------
T ss_pred             -CeeecCC----cceEEEEeCC-CC----HHHHHHHHHHHCCEEEeCchhcCC---------------------------
Confidence             3333432    2445555664 22    123455666688999987754410                           


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                               .+.+|+|++  ++.+||+++++.|+++++
T Consensus       361 ---------~~~~Ris~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          361 ---------PGFVRLSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             ---------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             ---------CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence                     148999999  499999999999998874

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.72  E-value=8.7e-17  Score=171.99  Aligned_cols=147  Identities=9%  Similarity=0.046  Sum_probs=107.1

Q ss_pred             ccCccccccchHHHHHHHHHHHHHHHcCCCCCcEEEe-ccCchHHHHH-------------------------HHHHHcC
Q 007454          157 NLKTQLLHGGQESGLESAMKKRIMDFLNISENDYVYD-YESEAVEAMI-------------------------RTSEKRG  210 (603)
Q Consensus       157 N~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~-~es~sV~~~~-------------------------~~a~~~G  210 (603)
                      ++...+.|+.......++.|++|++++|++  +.++. .-++++..++                         ..+++.|
T Consensus        53 ~~~~~~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g  130 (392)
T 3qhx_A           53 GLRGGYEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWN  130 (392)
T ss_dssp             CCBTTBCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGT
T ss_pred             cccCCccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcC
Confidence            333455666666677889999999999986  44332 1112222222                         2224557


Q ss_pred             CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC
Q 007454          211 ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS  289 (603)
Q Consensus       211 a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~  289 (603)
                      .++..++++      +.++|++.|..      ++++|.+...+|.||.++|++.| ++|+++|+++++|.++..+.   .
T Consensus       131 ~~~~~v~~~------d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~---~  195 (392)
T 3qhx_A          131 VEYTPVALA------DLDAVRAAIRP------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA---L  195 (392)
T ss_dssp             CEEEEECTT------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT---T
T ss_pred             cEEEEeCCC------CHHHHHHhhCC------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc---c
Confidence            777776653      68889888863      69999999999999999999966 58999999999999987764   2


Q ss_pred             CCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeC
Q 007454          290 FGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKK  322 (603)
Q Consensus       290 ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk  322 (603)
                      .+.-.+++|+++.|+||++|  |.|   .|+++.++
T Consensus       196 ~~~~~~~~di~~~S~sK~lg--~~g~~~~G~v~~~~  229 (392)
T 3qhx_A          196 QQPLSLGADVVLHSTTKYIG--GHSDVVGGALVTND  229 (392)
T ss_dssp             CCGGGGTCSEEEEETTTTTT--CSSCCCCEEEEESC
T ss_pred             CChHHhCCcEEEEcCccccC--CCCCceEEEEEECc
Confidence            23335689999999999999  545   78777764

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.72  E-value=6.2e-17  Score=171.66  Aligned_cols=308  Identities=14%  Similarity=0.090  Sum_probs=182.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec-cCchHH----------------------------HHHHHHHHcCCEEEEEeccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY-ESEAVE----------------------------AMIRTSEKRGARVMSAEFSW  220 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV~----------------------------~~~~~a~~~Ga~V~~~~~~~  220 (603)
                      ...++.|++|++++|++  +.+|.. -++++.                            .....++..|++++.+++++
T Consensus        34 ~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~  111 (390)
T 3b8x_A           34 EYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI  111 (390)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT
T ss_pred             hHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCc
Confidence            45668888888888875  333321 111111                            12233445688899998875


Q ss_pred             CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC--
Q 007454          221 PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP--  297 (603)
Q Consensus       221 ~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~--  297 (603)
                      .++.++.++|++.|..      ++++|+++   |.+|...|++.| ++|+++|+++++|++|..+.  .. +...++.  
T Consensus       112 ~~~~~d~~~l~~~i~~------~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~~~~~g~~~  179 (390)
T 3b8x_A          112 NTLNIDIESLKEAVTD------STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGA--TF-NNKCAGTFG  179 (390)
T ss_dssp             TTCSBCHHHHHHHCCT------TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTC--EE-TTEETTSSS
T ss_pred             cccCcCHHHHHHHhCc------CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccC--EE-CCccccccc
Confidence            4588999999999863      58888886   479999999966 58999999999999999876  22 4444444  


Q ss_pred             cEEEEc---ccccCCCCCCceEEEEEeC-CCCcCcCCCCCCCceecccc------ccccccccccCCCCCCcccCccccc
Q 007454          298 DFLICS---FYQIFGENPSGFGCLFVKK-STVPILVDNTSSGMVSLLPA------KKQLWLTDEFSSCETEPEQTSKSKQ  367 (603)
Q Consensus       298 Dflv~S---~hK~fG~~P~G~G~L~vkk-~~~~~L~p~~~gG~v~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~  367 (603)
                      |+.++|   +||+.+  |.| |+++.++ .+.+.+++...+|.......      ....+......  .++     ... 
T Consensus       180 ~~~~~s~~~~k~~~~--g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~g-  248 (390)
T 3b8x_A          180 LMGTFSSFYSNHIAT--MEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESF--KFV-----LPG-  248 (390)
T ss_dssp             SEEEEECCTTSSSCS--SSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSS--CBC-----SCC-
T ss_pred             ceEEEEccCCCCCcc--CCc-eEEEeCCHHHHHHHHHHHhcCCCcccccccccccccccccccccc--cee-----ccc-
Confidence            777765   467655  567 8888876 44333433222231000000      00000000000  000     000 


Q ss_pred             ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454          368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW  447 (603)
Q Consensus       368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~  447 (603)
                       +..+|.++.++++++                                         +++.     ++.+.++.+.+.++
T Consensus       249 -~~~~~~~~~aa~~l~-----------------------------------------~l~~-----l~~~~~~~~~~~~~  281 (390)
T 3b8x_A          249 -YNVRPLEMSGAIGIE-----------------------------------------QLKK-----LPRFISVRRKNAEY  281 (390)
T ss_dssp             -CBCCCCHHHHHHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHH
T ss_pred             -cccCcCHHHHHHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHH
Confidence             123466666665543                                         3433     45778888999999


Q ss_pred             HHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE--EEEEEccCCCCccCHHHHHHHHhcCCcEEee---CcccCc-cCCc
Q 007454          448 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA--LAFNVFDWKREKIEPVLVQKLADRENISLSY---GSLHHI-WFSD  521 (603)
Q Consensus       448 L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i--vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~---G~~C~~-~~~~  521 (603)
                      |.+.|.+++        .++++++.   .+.+.  +.+.+.+..|  +..+.+.+.+.++||.++.   |++|.. +...
T Consensus       282 l~~~L~~~~--------~~~~~~~~---~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~  348 (390)
T 3b8x_A          282 FLDKFKDHP--------YLDVQQET---GESSWFGFSFIIKKDSG--VIRKQLVENLNSAGIECRPIVTGNFLKNTDVLK  348 (390)
T ss_dssp             HHHHHTTCS--------SEEECCCC---SBCCCCEEEEEECTTSC--CCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHT
T ss_pred             HHHHhcCCC--------CcccCCCC---CCcccEEEEEEecCcCc--ccHHHHHHHHHHCCCCeeeecCCchhhcchhhh
Confidence            999998752        37787653   23344  4445553112  3445566666678999998   778866 4321


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                      .. .  ...+.+   |...         .....+.||+|++.++|.|||+++++.|
T Consensus       349 ~~-~--~~~~~~---~~~~---------~~~~~~~l~l~~~~~~t~~di~~i~~~l  389 (390)
T 3b8x_A          349 YF-D--YTVHNN---VDNA---------EYLDKNGLFVGNHQIELFDEIDYLREVL  389 (390)
T ss_dssp             TC-E--EEESSC---CHHH---------HHHHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred             cC-C--CCCcCC---ChHH---------HHHhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence            10 0  000000   0000         0112258999999999999999999876

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.72  E-value=1.1e-16  Score=168.10  Aligned_cols=270  Identities=10%  Similarity=0.027  Sum_probs=180.4

Q ss_pred             HHHHHHHHHcC------CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCcccc
Q 007454          174 AMKKRIMDFLN------ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       174 ~aR~~Ia~~ln------a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      +.|+.|+++++      +++++++++... +++                     ......++..|+++..+++++ +  +
T Consensus        62 ~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~--~  138 (377)
T 3fdb_A           62 LLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATG-G--I  138 (377)
T ss_dssp             CHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTT-S--C
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCC-C--C
Confidence            57788888887      788888775321 111                     122344566788899988874 3  8


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----C-CCCCCCCCCC--
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----P-KDMDSFGLSL--  294 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~-~~m~~ldls~--  294 (603)
                      +.++|++.|..      ++++++++..+|.||.++|.+.+    ++|+++|+++++|.++..    + +  ...++..  
T Consensus       139 d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~--~~~~~~~~~  210 (377)
T 3fdb_A          139 NLHDVEKGFQA------GARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQH--TVAAGVSDT  210 (377)
T ss_dssp             CHHHHHHHHHT------TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCC--CCGGGSCHH
T ss_pred             CHHHHHHHhcc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCC--CcccHHHcc
Confidence            99999999974      47899999999999999987643    358899999999998765    3 2  1223322  


Q ss_pred             -CCCcEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          295 -VRPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       295 -~~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                       .+.++++.|++|.||  +.|  +|++++. +.+++.+....                                .   ..
T Consensus       211 ~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~--------------------------------~---~~  253 (377)
T 3fdb_A          211 AASVCITITAPSKAWN--IAGLKCAQIIFSNPSDAEHWQQLS--------------------------------P---VI  253 (377)
T ss_dssp             HHHHEEEEECSTTTTT--CGGGCCEEEECCSHHHHHHHHHSC--------------------------------H---HH
T ss_pred             CCCcEEEEEeChHhcc--CcchhheEEEeCCHHHHHHHHHHH--------------------------------H---hh
Confidence             344589999999998  446  6777763 33332222100                                0   11


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .++.|..+..++.                                        ++++... -.++.+.++.+.+.++|.+
T Consensus       254 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~  292 (377)
T 3fdb_A          254 KDGASTLGLIAAE----------------------------------------AAYRYGT-DFLNQEVAYLKNNHDFLLH  292 (377)
T ss_dssp             HCCCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHH----------------------------------------HHHhccH-HHHHHHHHHHHHHHHHHHH
Confidence            2344444443322                                        3443211 1256778888999999999


Q ss_pred             HHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          451 ALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       451 ~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      .|.+ ++        .++++.|.    .+.++.+++++..   ++.++++++++++||.++.|..|...           
T Consensus       293 ~L~~~~~--------~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~-----------  346 (377)
T 3fdb_A          293 EIPKRIP--------GAKITPMQ----ATYLMWIDFRDTT---IEGSPSEFFIEKAKVAMNDGAWFGED-----------  346 (377)
T ss_dssp             HHHHHST--------TCEECCCS----BCSEEEEECTTSC---CCSCHHHHHHHHHCEECEEGGGGCGG-----------
T ss_pred             HHHhhCC--------CceEecCC----eeEEEEEECcccC---CCHHHHHHHHHhCCEEecCChhccCC-----------
Confidence            9987 42        26676653    3445567776521   12345778888889999999777431           


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             ..+.||+|++  ++.|||+++++.|++++++
T Consensus       347 -----------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~  375 (377)
T 3fdb_A          347 -----------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH  375 (377)
T ss_dssp             -----------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred             -----------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence                                   1268999999  4899999999999988753

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.72  E-value=1.1e-16  Score=170.76  Aligned_cols=275  Identities=12%  Similarity=0.071  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHc------CCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Ccc
Q 007454          173 SAMKKRIMDFL------NISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l------na~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~g  223 (603)
                      .+.|+.|++++      ++++++++++... ++                     ...+...++..|+++..++.+. .+.
T Consensus        81 ~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~  160 (406)
T 1xi9_A           81 PELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDW  160 (406)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTS
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCC
Confidence            36777777777      4667788765321 11                     1223344566799999888863 234


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCC--CC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD-MDSFGLSL--VR  296 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~--~~  296 (603)
                      .++.++|++.|..      ++++|.++..+|.||.++|   ++.+ ++|+++|+++++|.++....- -....+..  .+
T Consensus       161 ~~d~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  234 (406)
T 1xi9_A          161 QPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKD  234 (406)
T ss_dssp             EECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSS
T ss_pred             cCCHHHHHHhhCc------CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCC
Confidence            6899999998863      5889999999999999998   5534 578999999999998765320 01122222  24


Q ss_pred             C-cEEEEcccccCCCCCCc--eEEEE--EeC----CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccc
Q 007454          297 P-DFLICSFYQIFGENPSG--FGCLF--VKK----STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQ  367 (603)
Q Consensus       297 ~-Dflv~S~hK~fG~~P~G--~G~L~--vkk----~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  367 (603)
                      . |+++.|++|+||  +.|  +|+++  .++    ++++.+...                                 .. 
T Consensus       235 ~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~l~~~l~~~---------------------------------~~-  278 (406)
T 1xi9_A          235 VPVIVMNGLSKVYF--ATGWRLGYMYFVDPENKLSEVREAIDRL---------------------------------AR-  278 (406)
T ss_dssp             SCEEEEEESTTTTC--CGGGCCEEEEEECTTCTTHHHHHHHHHH---------------------------------HH-
T ss_pred             ceEEEEeccccccC--CCccEEEEEEEecCchhHHHHHHHHHHH---------------------------------HH-
Confidence            5 899999999999  558  89998  555    332222100                                 00 


Q ss_pred             ccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 007454          368 EKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINW  447 (603)
Q Consensus       368 ~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~  447 (603)
                       .. ++.|..+..++.                                        ++++...+ +++.+.++.+.+.++
T Consensus       279 -~~-~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~  315 (406)
T 1xi9_A          279 -IR-LCPNTPAQFAAI----------------------------------------AGLTGPMD-YLKEYMKKLKERRDY  315 (406)
T ss_dssp             -HT-CCSCSHHHHHHH----------------------------------------HHHHSCCH-HHHHHHHHHHHHHHH
T ss_pred             -hh-cCCCHHHHHHHH----------------------------------------HHHhCCcH-HHHHHHHHHHHHHHH
Confidence             11 333433332222                                        34431111 256777888899999


Q ss_pred             HHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE-EEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhh
Q 007454          448 LVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQK  525 (603)
Q Consensus       448 L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs-Fnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~  525 (603)
                      +.+.|.+++        .++++.|.     ++.+. +.++...+  .+. +++++|++++||.++.|..|..        
T Consensus       316 l~~~L~~~~--------~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~~f~~--------  372 (406)
T 1xi9_A          316 IYKRLNEIP--------GISTTKPQ-----GAFYIFPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGSGFGE--------  372 (406)
T ss_dssp             HHHHHHTST--------TEECCCCC-----BSSEECCEECSCSC--SSHHHHHHHHHHHHCEECEEGGGGCG--------
T ss_pred             HHHHHHhCC--------CCeeecCC-----eeEEEEEecCccCC--CCHHHHHHHHHHhCCEEEeCchhcCC--------
Confidence            999998752        26665542     34333 35542101  122 3455666688999998866531        


Q ss_pred             hhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          526 EKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       526 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                ...+.||+|++  ++.+||+++++.|+++++.
T Consensus       373 --------------------------~~~~~lRis~~--~~~~~i~~~~~~l~~~l~~  402 (406)
T 1xi9_A          373 --------------------------YGAGHFRAVFL--PPIEILEEAMDRFEKFMKE  402 (406)
T ss_dssp             --------------------------GGTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence                                      01258999998  9999999999999998864

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.72  E-value=1.4e-16  Score=171.01  Aligned_cols=277  Identities=12%  Similarity=0.133  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHHHcC--CCCCcEEEeccCc-hHH---------------------HHHHHHHHcCCEEEEEeccCCcc-
Q 007454          169 SGLESAMKKRIMDFLN--ISENDYVYDYESE-AVE---------------------AMIRTSEKRGARVMSAEFSWPRL-  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~ln--a~~~e~vf~~es~-sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g-  223 (603)
                      .++.+++++.+++.+|  +++++++|+.... ++.                     .....++..|.++..+++++.++ 
T Consensus        99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~  178 (421)
T 3l8a_A           99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGR  178 (421)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTE
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCC
Confidence            4677788888888888  6778888764321 222                     22334556788888888763333 


Q ss_pred             -ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454          224 -RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALG----PKDMDSFGLSL  294 (603)
Q Consensus       224 -~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~  294 (603)
                       .++.++|++.|..     +++++|.++..+|.||.++|.   +.+ ++|+++|+++++|.++..    ++  ....+..
T Consensus       179 ~~~d~~~le~~i~~-----~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~  251 (421)
T 3l8a_A          179 FEIDFEQLEKDIID-----NNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNT  251 (421)
T ss_dssp             EECCHHHHHHHHHH-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred             eeeCHHHHHHHhhc-----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHH
Confidence             5899999999973     268999999999999999655   433 468999999999999765    32  1122222


Q ss_pred             -----CCCcEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454          295 -----VRPDFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK  366 (603)
Q Consensus       295 -----~~~Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  366 (603)
                           .+.++++.|++|.||  +.|  +|+++++ +++.+.+.+..                                ..
T Consensus       252 ~~~~~~~~~i~~~s~sK~~g--~~G~~~G~~~~~~~~l~~~~~~~~--------------------------------~~  297 (421)
T 3l8a_A          252 LDASYKDFTIILSSATKTFN--IAGTKNSFAIIQNESLRRKFQYRQ--------------------------------LA  297 (421)
T ss_dssp             SCTTGGGTEEEEECSHHHHT--CGGGCCEEEECCSHHHHHHHHHHH--------------------------------HH
T ss_pred             cCchhcCcEEEEEeChhhcc--CchhheEeEEcCCHHHHHHHHHHH--------------------------------Hh
Confidence                 345599999999998  446  4888887 44433232100                                00


Q ss_pred             cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454          367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN  446 (603)
Q Consensus       367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~  446 (603)
                        ...+++|..+++++.                                        ++++..+. .++.+.++.+.+.+
T Consensus       298 --~~~~~~n~~~~~a~~----------------------------------------aal~~~~~-~~~~~~~~~~~~~~  334 (421)
T 3l8a_A          298 --NNQHEVPTVGMIATQ----------------------------------------AAFQYGKP-WLEELKTVIEGNIK  334 (421)
T ss_dssp             --TTCSCCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHH
T ss_pred             --cccCCCCHHHHHHHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHH
Confidence              123355666554443                                        34443222 25777888899999


Q ss_pred             HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE-EEEcc--CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchh
Q 007454          447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA-FNVFD--WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKY  523 (603)
Q Consensus       447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs-Fnv~~--~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~  523 (603)
                      +|.+.|.+++        .++++.|.     +..+. +.+..  .++    .+++++|++++||.++.|..|..      
T Consensus       335 ~l~~~L~~~~--------~i~~~~~~-----~~~~~~v~~~~~~~~~----~~l~~~l~~~~gi~v~~g~~f~~------  391 (421)
T 3l8a_A          335 LVIKELEAKT--------KIKVMEPE-----GTYLVWLDFSAYAIAQ----PQLSEKLQNEAKVVLNDGAHFGK------  391 (421)
T ss_dssp             HHHHHHHHHC--------SCEEECCS-----BSSEEEEECGGGTCCT----THHHHHHHHTTCEECEEGGGGCG------
T ss_pred             HHHHHHHhCC--------CceEeCCC-----eeEEEEEeccccCCCH----HHHHHHHHHhCCEEEECchhhCC------
Confidence            9999998752        26666653     33333 66654  232    24566677788999999877632      


Q ss_pred             hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                                  .+.+.||+|++  ++.+||+++++.|++.++
T Consensus       392 ----------------------------~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          392 ----------------------------EGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             ----------------------------GGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             ----------------------------CCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence                                        11369999999  699999999999998764

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.72  E-value=6.1e-16  Score=165.04  Aligned_cols=321  Identities=13%  Similarity=0.071  Sum_probs=201.7

Q ss_pred             CCceeeecCC-----CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFG-----IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMD  181 (603)
Q Consensus       107 ~~~vYLDyaa-----~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~  181 (603)
                      .+.++|+.+.     ..+.++.+++++.+.+....                        ...|+.  .....+.|++|++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~------------------------~~~y~~--~~~~~~lr~~la~   86 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE------------------------CNGYFP--TVGSPEAREAVAT   86 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC------------------------SSSCCC--TTCCHHHHHHHHH
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc------------------------cCCcCC--CCCCHHHHHHHHH
Confidence            3568888775     35678888888765432100                        000110  0112478888888


Q ss_pred             HcC------------CCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCC-ccccC
Q 007454          182 FLN------------ISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWP-RLRIN  226 (603)
Q Consensus       182 ~ln------------a~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~-~g~i~  226 (603)
                      +++            +++++++++... +++                     ......++..|+++..++++.. +..++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d  166 (416)
T 1bw0_A           87 WWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEAD  166 (416)
T ss_dssp             HHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred             HHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCC
Confidence            888            777888765321 111                     1123445667899888887632 24689


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CC----CCCCC-CCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PK----DMDSF-GLS  293 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~----~m~~l-dls  293 (603)
                      .++|++.|..      +++++++...+|.||.++|   ++.+ ++|+++|+++++|.++..    ++    .+.++ .+.
T Consensus       167 ~~~l~~~l~~------~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~  240 (416)
T 1bw0_A          167 LDEIRRLKDD------KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE  240 (416)
T ss_dssp             HHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred             HHHHHHHhcc------CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence            9999998863      5789999999999999999   6644 578999999999998765    32    11111 122


Q ss_pred             CCCCcEEEEcccccCCCCCCc--eEEEEEeCC--CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSG--FGCLFVKKS--TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~--~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                      ....++++.|++|+||.  .|  +|++++++.  .++.+...    .        .                   ... .
T Consensus       241 ~~~~~i~~~s~sK~~~~--~Glr~G~~~~~~~~~~~~~~~~~----~--------~-------------------~~~-~  286 (416)
T 1bw0_A          241 TTVPRVILGGTAKNLVV--PGWRLGWLLYVDPHGNGPSFLEG----L--------K-------------------RVG-M  286 (416)
T ss_dssp             CSCCEEEEEESTTTTSC--GGGCCEEEEEECTTCSCHHHHHH----H--------H-------------------HHH-H
T ss_pred             CCCcEEEEecchhhCCC--CCceEEEEEeeCchhhHHHHHHH----H--------H-------------------HHh-c
Confidence            22335788899999984  36  899999874  43222210    0        0                   000 0


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV  449 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~  449 (603)
                      ..+++|..+..++.                                        ++++....-+++.+.++.+.+.++|.
T Consensus       287 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~  326 (416)
T 1bw0_A          287 LVCGPCTVVQAALG----------------------------------------EALLNTPQEHLDQIVAKIEESAMYLY  326 (416)
T ss_dssp             HHTCSCHHHHHHHH----------------------------------------HHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCcHHHHHHH----------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            12344544443332                                        34442112246777888899999999


Q ss_pred             HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC-CCccC-HHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK-REKIE-PVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~-g~~v~-~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      +.|.+++        .++++.|.    .+..+.+.++... ....+ ..++++|++++||.++.|..|..          
T Consensus       327 ~~L~~~~--------g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~----------  384 (416)
T 1bw0_A          327 NHIGECI--------GLAPTMPR----GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA----------  384 (416)
T ss_dssp             HHHTTST--------TEEECCCC----BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC----------
T ss_pred             HHHHhCC--------CCcccCCC----eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC----------
Confidence            9998752        26776652    3666777775310 00012 23456676788999998755420          


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                .+.+|+|++  ++.+++++.++.|.+++.+
T Consensus       385 --------------------------~~~iRis~~--~~~e~l~~~l~~l~~~l~~  412 (416)
T 1bw0_A          385 --------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQR  412 (416)
T ss_dssp             --------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence                                      258999996  6899999999999988764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.71  E-value=1.6e-16  Score=183.91  Aligned_cols=298  Identities=11%  Similarity=0.026  Sum_probs=197.8

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCC---
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWP---  221 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~---  221 (603)
                      ..+.+.++.+++++|++ ..+++..                         +|.++   ...++..|+++++++.++.   
T Consensus       205 g~v~~~ee~la~l~G~d-~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~---~~~~~~~G~~~v~v~~~~~~~g  280 (755)
T 2vyc_A          205 GAFGESEKYAARVFGAD-RSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSI---EQGLMLTGAKPVYMVPSRNRYG  280 (755)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHH---HHHHHHHCCEEEEECCCBCTTS
T ss_pred             cHHHHHHHHHHHHhCCC-ceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHH---HHHHHHcCCEEEEEeCCCCccc
Confidence            45678999999999986 3454321                         22232   2334556999999887532   


Q ss_pred             -cccc-----CHHHHHHHHhhcCC----CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCC
Q 007454          222 -RLRI-----NSEKLRKMVVSKGK----KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSF  290 (603)
Q Consensus       222 -~g~i-----~~~~L~~~l~~~~~----~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~l  290 (603)
                       .+.+     +.++|+++|....+    ...+++++++.+ .|.+|.++|++.| ++|+++|++|++|+++.+.....+.
T Consensus       281 ~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~-pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~  359 (755)
T 2vyc_A          281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTN-CTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPI  359 (755)
T ss_dssp             CBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEES-SCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGG
T ss_pred             cccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEEC-CCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcc
Confidence             1346     99999999975211    122345888887 4789999999966 5899999999999998642100111


Q ss_pred             --CCCC-CC--CcE------EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454          291 --GLSL-VR--PDF------LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       291 --dls~-~~--~Df------lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                        +.+. .+  +|+      ++.|+||++++ |.|.|+++++++.. .+...             . +  ..        
T Consensus       360 ~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g-~~~g~~i~~~~~~~-~i~~~-------------~-~--~~--------  413 (755)
T 2vyc_A          360 YADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRG-AINFS-------------R-F--NQ--------  413 (755)
T ss_dssp             GTTSSSSCSCCCCCSSBEEEEEEETTTSSSC-CTTCEEEEEECCBT-CCCHH-------------H-H--HH--------
T ss_pred             cCCcchhcCCcCCccCCCeEEEECccccccC-cCCeeeeeecCccc-ccCHH-------------H-H--HH--------
Confidence              1222 34  687      99999999886 88999999988710 01100             0 0  00        


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                         ....  ++.+|+++.+++++.                                        .|++++...|.....+
T Consensus       414 ---~~~~--~~s~sp~~~~iaal~----------------------------------------aA~~~l~~~gg~~~~~  448 (755)
T 2vyc_A          414 ---AYMM--HATTSPLYAICASND----------------------------------------VAVSMMDGNSGLSLTQ  448 (755)
T ss_dssp             ---HHHH--TSCSSCCHHHHHHHH----------------------------------------HHHHHHSTHHHHHHHH
T ss_pred             ---HHHH--hCCCCHHHHHHHHHH----------------------------------------HHHHHHHhhhHHHHHH
Confidence               0012  468999999988876                                        5777766554566778


Q ss_pred             HHHHHHHHHHHHHhcCCCC-CCCCCceEEEeCCCCCC----------------------------------------C--
Q 007454          440 RGRCLINWLVNALMKLQHP-NTEGNALVKIYGPKIRF----------------------------------------D--  476 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~-~~~g~plv~Iygp~~~~----------------------------------------~--  476 (603)
                      +...++++++++|.++... ...+.-.+++|+|....                                        .  
T Consensus       449 ~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~  528 (755)
T 2vyc_A          449 EVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNW  528 (755)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTS
T ss_pred             HHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCc
Confidence            8889999999999876310 00001126777764210                                        0  


Q ss_pred             ---CCCEEEEEEcc--CCCC----ccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccc
Q 007454          477 ---RGPALAFNVFD--WKRE----KIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRK  547 (603)
Q Consensus       477 ---rg~ivsFnv~~--~~g~----~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  547 (603)
                         -+..|+|++++  .+|+    -++...+.+.++++||.+.-                                    
T Consensus       529 ~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~------------------------------------  572 (755)
T 2vyc_A          529 SMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR------------------------------------  572 (755)
T ss_dssp             EEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE------------------------------------
T ss_pred             cccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee------------------------------------
Confidence               13588999985  4452    25666777777778887531                                    


Q ss_pred             cCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          548 DKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       548 ~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                          ...+.||+++++.+|.+||++|+++|.+|...
T Consensus       573 ----~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~  604 (755)
T 2vyc_A          573 ----TTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRH  604 (755)
T ss_dssp             ----ECSSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred             ----cCCCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence                11368999999999999999999999998643

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.71  E-value=4.1e-16  Score=167.29  Aligned_cols=324  Identities=10%  Similarity=0.016  Sum_probs=202.8

Q ss_pred             CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454          108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL---  183 (603)
Q Consensus       108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l---  183 (603)
                      +.|+|+++... ..++.+++++.+.+...         +            + ....|+..  .-..+.|++|++++   
T Consensus        38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~------------~-~~~~y~~~--~g~~~l~~~la~~l~~~   93 (429)
T 1yiz_A           38 KPLNLGQGFPDYHAPKYALNALAAAANSP---------D------------P-LANQYTRG--FGHPRLVQALSKLYSQL   93 (429)
T ss_dssp             CCEECCSSSCSSCCCHHHHHHHHHHHTCS---------C------------G-GGGSCCCS--SCCHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhcc---------c------------c-CccCCCCC--CCcHHHHHHHHHHHHHH
Confidence            46888887665 35678888876643210         0            0 00011110  00135666666665   


Q ss_pred             -C--CCCC-cEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC---------ccccCHH
Q 007454          184 -N--ISEN-DYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP---------RLRINSE  228 (603)
Q Consensus       184 -n--a~~~-e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~---------~g~i~~~  228 (603)
                       |  ++++ +++|+... +++..                     ....++..|+++..++.++.         ++.++.+
T Consensus        94 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~  173 (429)
T 1yiz_A           94 VDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNN  173 (429)
T ss_dssp             HTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHH
T ss_pred             hCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHH
Confidence             7  5677 88775421 12221                     12334567888888888743         3468999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCC-CCC-CCCCc
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSF-GLS-LVRPD  298 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~l-dls-~~~~D  298 (603)
                      +|++.|..      ++++|.+...+|.||.++|   ++.+ ++|+++|+++++|.++..    +....++ .+. ..+.|
T Consensus       174 ~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~  247 (429)
T 1yiz_A          174 ELEALFNE------KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERT  247 (429)
T ss_dssp             HHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGE
T ss_pred             HHHHHhcc------CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCce
Confidence            99998852      6899999999999999997   5534 578999999999999764    2211122 232 35789


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +++.|++|+||  +.|  +|++++++++++.+....                                .   ....+.|.
T Consensus       248 ~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~~~~~  290 (429)
T 1yiz_A          248 ITIGSAGKTFS--LTGWKIGWAYGPEALLKNLQMVH--------------------------------Q---NCVYTCAT  290 (429)
T ss_dssp             EEEEEHHHHHT--CGGGCCEEEESCHHHHHHHHHHH--------------------------------H---TTTCCCCH
T ss_pred             EEEecchhccC--CCCcceEEEEeCHHHHHHHHHHH--------------------------------h---hcccCCCh
Confidence            99999999999  668  999998876544332100                                0   01223333


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH-----HH-hcCHHHHHHHHHHHHHHHHH
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ-----VD-SLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~-----~~-~iGl~~i~~r~~~L~~~L~~  450 (603)
                      ....++.                                        ++|+.     .. .-.++++.++.+.+.++|.+
T Consensus       291 ~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  330 (429)
T 1yiz_A          291 PIQEAIA----------------------------------------VGFETELKRLKSPECYFNSISGELMAKRDYMAS  330 (429)
T ss_dssp             HHHHHHH----------------------------------------HHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----------------------------------------HHHhcccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            3332222                                        34443     10 11267788888999999999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCC--------CccCH-HHHHHHHhcCCcEEeeCcccCccCCc
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKR--------EKIEP-VLVQKLADRENISLSYGSLHHIWFSD  521 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g--------~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~  521 (603)
                      .|.++      |   ++++.|.    .+..+.+.+++...        ...+. .++++|++++||.++.|..|..... 
T Consensus       331 ~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~-  396 (429)
T 1yiz_A          331 FLAEV------G---MNPTVPQ----GGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN-  396 (429)
T ss_dssp             HHHHH------T---CEEEECS----BSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGG-
T ss_pred             HHHhC------C---CcccCCC----cceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcc-
Confidence            99875      2   4455442    36688888875310        00222 3455677789999998865532100 


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                                  .....+.||+|++  ++.+||+++++.|+++++
T Consensus       397 ----------------------------~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          397 ----------------------------KHLGEDFVRYCFF--KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             ----------------------------GGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred             ----------------------------cCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence                                        0011368999999  489999999999998865

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.71  E-value=2.3e-15  Score=158.42  Aligned_cols=262  Identities=9%  Similarity=0.048  Sum_probs=176.7

Q ss_pred             HHHHHHHHHH------cCCCCCcEEEeccC-chH---------------------HHHHHHHHHcCCEEEEEeccCCccc
Q 007454          173 SAMKKRIMDF------LNISENDYVYDYES-EAV---------------------EAMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       173 ~~aR~~Ia~~------lna~~~e~vf~~es-~sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      .+.|++|+++      +++++++++++... +++                     ......++..|+++..++.+ .+..
T Consensus        72 ~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~-~~~~  150 (369)
T 3cq5_A           72 VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG-ADFR  150 (369)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC-TTSS
T ss_pred             HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC-cCCC
Confidence            3688888888      67778888775321 111                     12233456678999988876 3557


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC-CCCCCC-CCCC-CcEE
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD-MDSFGL-SLVR-PDFL  300 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldl-s~~~-~Dfl  300 (603)
                      ++.++|++.+...     ++++|.++..+|.||.++|++.+ ++++..++++++|.++..... ...+++ ...+ .+++
T Consensus       151 ~d~~~l~~~i~~~-----~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~  225 (369)
T 3cq5_A          151 IDMDVALEEIRAK-----QPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVV  225 (369)
T ss_dssp             CCHHHHHHHHHHH-----CCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEE
T ss_pred             CCHHHHHHHhhcc-----CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEE
Confidence            8999999998741     47888899999999999999966 478888999999999876541 011332 2345 6799


Q ss_pred             EEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          301 ICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       301 v~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      +.|++|+||  +.|  +|++++++++++.+....                                     ...++|..+
T Consensus       226 ~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~-------------------------------------~~~~~~~~~  266 (369)
T 3cq5_A          226 SRTMSKAFD--FAGGRLGYFVANPAFIDAVMLVR-------------------------------------LPYHLSALS  266 (369)
T ss_dssp             EEESSSTTS--CGGGCCEEEEECTHHHHHHHTTS-------------------------------------CTTCSCHHH
T ss_pred             EEechHhcC--CcccceEEEEeCHHHHHHHHHcC-------------------------------------CCCCCCHHH
Confidence            999999998  447  699999876544333210                                     011233333


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      ..++.                                        ++++..+  .++.+.++.+.++++|.+.|.++   
T Consensus       267 ~~a~~----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~---  301 (369)
T 3cq5_A          267 QAAAI----------------------------------------VALRHSA--DTLGTVEKLSVERVRVAARLEEL---  301 (369)
T ss_dssp             HHHHH----------------------------------------HHHHTHH--HHHTHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHH----------------------------------------HHhcCHH--HHHHHHHHHHHHHHHHHHHHHhC---
Confidence            22221                                        3443211  25667778888999999999874   


Q ss_pred             CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                         |   ++++.+     .++.+.|.++ .     +...+.+.+.++||.++.|     +                    
T Consensus       302 ---g---~~~~~~-----~~~~~~~~~~-~-----~~~~l~~~l~~~gi~v~~~-----~--------------------  339 (369)
T 3cq5_A          302 ---G---YAVVPS-----ESNFVFFGDF-S-----DQHAAWQAFLDRGVLIRDV-----G--------------------  339 (369)
T ss_dssp             ---T---CEEECC-----SSSEEEEECC-S-----SHHHHHHHHHHTTEECBCC-----S--------------------
T ss_pred             ---C---CEECCC-----CCeEEEEECC-C-----CHHHHHHHHHHCCEEEEEC-----C--------------------
Confidence               2   455532     4678888775 1     2334444456789998765     0                    


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                   . .+.+|+|++   |.+|++++++.|+++++.
T Consensus       340 -------------~-~~~iRis~~---~~~~i~~~~~~l~~~~~~  367 (369)
T 3cq5_A          340 -------------I-AGHLRTTIG---VPEENDAFLDAAAEIIKL  367 (369)
T ss_dssp             -------------C-TTEEEEECC---CHHHHHHHHHHHHHHHTT
T ss_pred             -------------C-CCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence                         0 158999998   899999999999988753

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.71  E-value=1.5e-16  Score=169.47  Aligned_cols=307  Identities=11%  Similarity=0.026  Sum_probs=189.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC-chHHHH----------------------HHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES-EAVEAM----------------------IRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~----------------------~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.|++|++++|+  +++++.... +++..+                      ...++..|+++..++++ .++.++
T Consensus        32 ~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d  108 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD-ETYNID  108 (394)
T ss_dssp             HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBC-TTSSBC
T ss_pred             hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeC-CCCCcC
Confidence            4567899999999987  456554221 111111                      12334568899999887 578899


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC---CCCCCcEEEE
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL---SLVRPDFLIC  302 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl---s~~~~Dflv~  302 (603)
                      .++|++.|...+   .++++|.+.+   +||...|++.+ ++|+++|+++++|+++..+.  ...+.   +..++|++++
T Consensus       109 ~~~l~~~i~~~~---~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~~~~~~~~~~~~~~~~s~  180 (394)
T 1o69_A          109 VDLLKLAIKECE---KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGS--FYKNKALGTFGEFGVYSY  180 (394)
T ss_dssp             HHHHHHHHHHCS---SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSSSSEEEEEC
T ss_pred             HHHHHHHHhccc---CCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccc--eeCCcccccccCcEEEEE
Confidence            999999997421   1478888764   89999999865 58999999999999998654  12222   1236899999


Q ss_pred             cccccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          303 SFYQIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       303 S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      |.||.+|  |.++|+++++ +++++.+.+...+|... .+.    +  .     ..+      .+  ++.||+++.++++
T Consensus       181 s~~K~l~--~~~~G~~~~~~~~l~~~l~~~~~~~~~~-~~~----~--~-----~~~------~g--~~~~~~~~~aa~~  238 (394)
T 1o69_A          181 NGNKIIT--TSGGGMLIGKNKEKIEKARFYSTQAREN-CLH----Y--E-----HLD------YG--YNYRLSNVLGAIG  238 (394)
T ss_dssp             CTTSSSC--CSSCEEEEESCHHHHHHHHHHTBTCCCS-SSS----C--C-----CSS------CC--CBCBCCHHHHHHH
T ss_pred             eCCccCC--CCCceEEEECCHHHHHHHHHHHHhcccc-Ccc----c--c-----ccc------cC--cccCcCHHHHHHH
Confidence            9999999  7799999996 56555454321112110 000    0  0     000      11  4567877777665


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +.                                         .+++     ++.+.++.+.+.+++.+.|.++      
T Consensus       239 l~-----------------------------------------~l~~-----l~~~~~~~~~~~~~l~~~L~~~------  266 (394)
T 1o69_A          239 VA-----------------------------------------QMEV-----LEQRVLKKREIYEWYKEFLGEY------  266 (394)
T ss_dssp             HH-----------------------------------------HHTT-----HHHHHHHHHHHHHHHHHHHTTT------
T ss_pred             HH-----------------------------------------HHHH-----HHHHHHHHHHHHHHHHHHhccc------
Confidence            43                                         2333     4456678889999999999753      


Q ss_pred             CCceEEEeCCCCCCCCC--CEEEEEEccCC---------------CC--ccCHHHHHHHHhcCCcEEeeCcccCccCCch
Q 007454          462 GNALVKIYGPKIRFDRG--PALAFNVFDWK---------------RE--KIEPVLVQKLADRENISLSYGSLHHIWFSDK  522 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg--~ivsFnv~~~~---------------g~--~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~  522 (603)
                          ++++++.. ..++  .++.|.+++..               |.  .++...+.+.+.++||.+|.|..|....  +
T Consensus       267 ----~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~--p  339 (394)
T 1o69_A          267 ----FSFLDELE-NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQ--E  339 (394)
T ss_dssp             ----EECCCCCT-TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGC--G
T ss_pred             ----ccccCCCC-CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccc--h
Confidence                45555421 1122  36888886321               00  1234455555567899999996553210  1


Q ss_pred             hhhhhHHHHHhhh--cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          523 YQKEKDNVLEKTD--REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       523 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .       +..+.  .+.-   .      .......+|+++++++|.|||++++++|++++...
T Consensus       340 ~-------~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~  387 (394)
T 1o69_A          340 V-------FKGAKAYLNGN---S------ELFFQKGICLPSGTAMSKDDVYEISKLILKSIKAG  387 (394)
T ss_dssp             G-------GTTCEEEECSH---H------HHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             h-------hhccCCCCChH---H------HHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            0       00000  0000   0      00001356666799999999999999999886553

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.71  E-value=1.7e-15  Score=161.65  Aligned_cols=144  Identities=9%  Similarity=0.056  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....++.|++|++++|++ +.+++..                        .+.++ ..+...++..|+++..++.     
T Consensus        58 ~~~~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~-----  131 (389)
T 3acz_A           58 NPTVEQFEEMVCSIEGAA-GSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT-----  131 (389)
T ss_dssp             CHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-----
T ss_pred             ChHHHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-----
Confidence            456778999999999986 4444321                        12222 2223335677888888875     


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC  302 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~  302 (603)
                       .+.++|++.|..      ++++|.+...+|.||.++|++.+ ++|+++|+++++|.++..+....+++   +++|+++.
T Consensus       132 -~d~~~l~~~i~~------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~---~~~di~~~  201 (389)
T 3acz_A          132 -SDVEKVKAAWKP------NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPLE---LGADIALH  201 (389)
T ss_dssp             -TCHHHHHHTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGG---TTCSEEEE
T ss_pred             -CCHHHHHHhcCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCccc---cCCeEEEE
Confidence             267888888753      68999999999999999999966 58999999999999988765212454   57999999


Q ss_pred             cccccCCCCCCc--eEEEEEeC-CCCcCcC
Q 007454          303 SFYQIFGENPSG--FGCLFVKK-STVPILV  329 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk-~~~~~L~  329 (603)
                      |+||+||+ |.+  .|++++++ ++++.+.
T Consensus       202 S~sK~~~~-~~~~~~G~v~~~~~~~~~~l~  230 (389)
T 3acz_A          202 SVSKYING-HGDVIGGVSSAKTAEDIATIK  230 (389)
T ss_dssp             ETTTTTTC-SSCCCCEEEEESSHHHHHHHH
T ss_pred             CChhhccC-CCCceeEEEEECcHHHHHHHH
Confidence            99999886 666  59999987 6654443

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.71  E-value=2e-16  Score=167.66  Aligned_cols=278  Identities=13%  Similarity=0.111  Sum_probs=180.8

Q ss_pred             HHHHHHHHHHHHHHcCCC--C-CcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEeccC---
Q 007454          169 SGLESAMKKRIMDFLNIS--E-NDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEFSW---  220 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~--~-~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~---  220 (603)
                      .++.+++++.+++++|++  + ++++++..                      ..+.......++..|+++..++.++   
T Consensus        81 ~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  160 (407)
T 3nra_A           81 LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSA  160 (407)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSS
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccc
Confidence            467778888899988984  3 67866421                      1112223455677899999999832   


Q ss_pred             --CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCC
Q 007454          221 --PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSF  290 (603)
Q Consensus       221 --~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~l  290 (603)
                        .++.++.++|++.|..      +++++++...+|.||.++|   ++.+ ++|+++|+++++|.++..    ++.  ..
T Consensus       161 ~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~--~~  232 (407)
T 3nra_A          161 DETRAGLDLTGLEEAFKA------GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGAS--YT  232 (407)
T ss_dssp             CCSSCCBCHHHHHHHHHT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCC--CC
T ss_pred             cCcCCCcCHHHHHHHHhh------CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC--CC
Confidence              3677899999999974      5788999999999999999   6544 478999999999999875    331  22


Q ss_pred             CCC-----CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCc
Q 007454          291 GLS-----LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS  363 (603)
Q Consensus       291 dls-----~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~  363 (603)
                      .+.     ..+.++++.|++|+||  +.|  +|+++.++++++.+....            .                  
T Consensus       233 ~~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~------------~------------------  280 (407)
T 3nra_A          233 HLRAEAAVDAENVVTIMGPSKTES--LSGYRLGVAFGSRAIIARMEKLQ------------A------------------  280 (407)
T ss_dssp             CGGGCTTSCGGGEEEEECSSSTTC--CGGGCCEEEEECHHHHHHHHHHH------------H------------------
T ss_pred             ChhhcCcccCCcEEEEeCcccccC--CCeeeEEEEEcCHHHHHHHHHHH------------h------------------
Confidence            222     2446799999999999  335  788887765543333100            0                  


Q ss_pred             ccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHH
Q 007454          364 KSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC  443 (603)
Q Consensus       364 ~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~  443 (603)
                           ....+.+..+..++.                                        .+++.. .-.++...++.+.
T Consensus       281 -----~~~~~~~~~~~~a~~----------------------------------------~~l~~~-~~~~~~~~~~~~~  314 (407)
T 3nra_A          281 -----IVSLRAAGYSQAVLR----------------------------------------GWFDEA-PGWMEDRIARHQA  314 (407)
T ss_dssp             -----HHTSSSCHHHHGGGG----------------------------------------GTTCCC-TTHHHHHHHHHHH
T ss_pred             -----hhccCCChHHHHHHH----------------------------------------HHHhcc-chHHHHHHHHHHH
Confidence                 001122222222221                                        111100 0014556677788


Q ss_pred             HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCch
Q 007454          444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDK  522 (603)
Q Consensus       444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~  522 (603)
                      ++++|.+.|.+++     |   ++++.|.    .+..+.+.+.+.   .++. .++++|++++||.++.|..|.+.    
T Consensus       315 ~~~~l~~~L~~~~-----~---~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~----  375 (407)
T 3nra_A          315 IRDELLHVLRGCE-----G---VFARTPQ----AGSYLFPRLPKL---AVAPAEFVKILRLQAGVVVTPGTEFSPH----  375 (407)
T ss_dssp             HHHHHHHHHHTST-----T---CBCCCCS----BSSEECCBCCCB---SSCHHHHHHHHHHHHCEECEEGGGTCTT----
T ss_pred             HHHHHHHHHhcCC-----C---ceeccCC----eeEEEEEeCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCCC----
Confidence            8999999998763     1   4454442    234554444431   1233 34555667789999999777521    


Q ss_pred             hhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          523 YQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       523 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                    ..+.||+|++.  |.+||+++++.|++++..
T Consensus       376 ------------------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~  404 (407)
T 3nra_A          376 ------------------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVER  404 (407)
T ss_dssp             ------------------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             ------------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence                                          12589999994  999999999999998764

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.70  E-value=6e-16  Score=163.94  Aligned_cols=300  Identities=12%  Similarity=0.078  Sum_probs=181.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-CchHH----------------------HHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-SEAVE----------------------AMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~----------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.|++|++++|.+  +.+|... ++++.                      .....++..|+++..++++..++.++
T Consensus        56 ~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  133 (391)
T 3dr4_A           56 RFIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLD  133 (391)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccccCcC
Confidence            34678999999999876  4444311 11111                      12334456789999998875567889


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCC--CCCCCCcEEEEc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFG--LSLVRPDFLICS  303 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ld--ls~~~~Dflv~S  303 (603)
                      .++|++.|..      ++++|+   .+|.||...|++.+ ++|+++|+++++|++|..|.  ...+  +..+ .|++++|
T Consensus       134 ~~~l~~~~~~------~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~~~~~~~~~-~di~~~S  201 (391)
T 3dr4_A          134 AAKLEALITP------RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGA--TYRGKKSGSL-GDCATFS  201 (391)
T ss_dssp             GGGSGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTC--EETTEETTSS-SSEEEEE
T ss_pred             HHHHHHhcCC------CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccc--eECCeeeccc-CCEEEEE
Confidence            9998887753      577777   36899999999966 58999999999999988765  2222  2222 3666666


Q ss_pred             --ccccCCCCCCceEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          304 --FYQIFGENPSGFGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       304 --~hK~fG~~P~G~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                        .||+++  +...|+++.++. +.+.+++...+|...   . ..++.                    .+.|.. + .+.
T Consensus       202 ~s~~K~l~--~g~gg~~~~~~~~~~~~~~~~~~~g~~~---~-~~~~~--------------------~~~g~~-~-~~~  253 (391)
T 3dr4_A          202 FFGNAIIT--TGEGGMITTNDDDLAAKMRLLRGQGMDP---N-RRYWF--------------------PIVGFN-Y-RMT  253 (391)
T ss_dssp             CBTTSSSC--CBSCEEEEESCHHHHHHHHHHHBTTCCT---T-STTCC--------------------SSCCCB-C-BCC
T ss_pred             CCCCCcCC--cCCeEEEEECCHHHHHHHHHHHhcCCCC---C-Ccccc--------------------cccccc-c-CCC
Confidence              669998  422445555543 333333222223210   0 01110                    011211 1 111


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      .+.                                        +++.+....+++.+.++.+.+.+++.+.|.++ .   
T Consensus       254 ~l~----------------------------------------aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g---  289 (391)
T 3dr4_A          254 NIQ----------------------------------------AAIGLAQLERVDEHLAARERVVGWYEQKLARL-G---  289 (391)
T ss_dssp             HHH----------------------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-T---
T ss_pred             HHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---
Confidence            221                                        34444444478889999999999999999886 1   


Q ss_pred             CCCceEEEeCC--CCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc---ccCccCCchhhhhhHHHHHhh
Q 007454          461 EGNALVKIYGP--KIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS---LHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       461 ~g~plv~Iygp--~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~---~C~~~~~~~~~~~~~~~l~~~  534 (603)
                           ++++++  ... .....++.+.+++..+  +....+.+.+.++||.++.|.   +|.+.+...........    
T Consensus       290 -----~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~----  358 (391)
T 3dr4_A          290 -----NRVTKPHVALTGRHVFWMYTVRLGEGLS--TTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIA----  358 (391)
T ss_dssp             -----TSEECCCCCTTSCCCCSSEEEEECSSCS--SCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHH----
T ss_pred             -----ccccCcCCCCCCcceeEEEEEEECCccc--hhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHH----
Confidence                 345554  211 1223466777765322  344556666667899999986   66654322000000000    


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                     .......||++++.++|.|||+++++.|++++
T Consensus       359 ---------------~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          359 ---------------EACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             ---------------HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             ---------------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence                           00112589999999999999999999998765

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.70  E-value=4.7e-16  Score=164.31  Aligned_cols=315  Identities=10%  Similarity=-0.009  Sum_probs=185.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-----------------------CchHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-----------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.|++|++++|++  ++++...                       ..........++..|++++.+++++.++.++
T Consensus        39 ~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d  116 (393)
T 1mdo_A           39 PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT  116 (393)
T ss_dssp             HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred             hHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCC
Confidence            34568889999999874  4544311                       1111223345567899999999875446799


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC-CcEEEEcc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR-PDFLICSF  304 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~-~Dflv~S~  304 (603)
                      .++|++.|..      ++++|.+.   |.||...|++.+ ++|+++|+++++|+++..|.  .. +...++ +|++++|+
T Consensus       117 ~~~l~~~l~~------~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~--~~-~~~~~~~~d~~~~S~  184 (393)
T 1mdo_A          117 PEHIEAAITP------QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGT--SY-KGRHIGARGTAIFSF  184 (393)
T ss_dssp             HHHHHHHCCT------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTC--EE-TTEETTSSSEEEEEC
T ss_pred             HHHHHHhcCC------CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCC--eE-CCeecCCCCeEEEeC
Confidence            9999999863      57887764   589999999865 58999999999999998763  11 122234 89999999


Q ss_pred             c--ccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC-CChhhhh
Q 007454          305 Y--QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT-NTFSGPM  380 (603)
Q Consensus       305 h--K~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT-~n~~gi~  380 (603)
                      |  |+++  |...|+++.+ +++.+.+.+...+|...  +...+++  ..+          +..+...+.|+ .++..+.
T Consensus       185 ~k~K~l~--~~~~g~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~--~~~----------~~~~~~~~~g~~~~~~~~~  248 (393)
T 1mdo_A          185 HAIKNIT--CAEGGIVVTDNPQFADKLRSLKFHGLGV--DAWDRQS--GGR----------APQAEVLAPGYKYNLPDLN  248 (393)
T ss_dssp             CTTSSSC--SSSCEEEEESCHHHHHHHHHHTBTTEEC--C-----------------------CCEESSCCCBCCCCHHH
T ss_pred             CCCCccc--cccceEEEeCCHHHHHHHHHHHhcCCcc--cchhhhc--ccc----------cccccccccCccCCCCHHH
Confidence            9  9888  4345666665 45555454322222210  0001100  000          00000012343 1122111


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      + +                                        .++..++  +++.+.++.+.+.++|.+.|.++     
T Consensus       249 ~-a----------------------------------------~~~~~l~--~~~~~~~~~~~~~~~l~~~L~~~-----  280 (393)
T 1mdo_A          249 A-A----------------------------------------IALAQLQ--KLDALNARRAAIAAQYHQAMADL-----  280 (393)
T ss_dssp             H-H----------------------------------------HHHHHHH--THHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred             H-H----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC-----
Confidence            1 0                                        1222332  46778888889999999999875     


Q ss_pred             CCCceEEEeCCCC--CCCCCCEEEEEEccCC-CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          461 EGNALVKIYGPKI--RFDRGPALAFNVFDWK-REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       461 ~g~plv~Iygp~~--~~~rg~ivsFnv~~~~-g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                         + ++++++..  ....+.++.|.+++.. +  ++...+.+.+.++||.++.|..|....  ++       ...+.  
T Consensus       281 ---~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~gi~v~~~~~~~~~~--~~-------~~~~~--  343 (393)
T 1mdo_A          281 ---P-FQPLSLPSWEHIHAWHLFIIRVDEARCG--ITRDALMASLKTKGIGTGLHFRAAHTQ--KY-------YRERF--  343 (393)
T ss_dssp             ---S-CEECCCCSSCEECCCSCEEEECCHHHHS--SCHHHHHHHHHHTTBCCBCCCCCGGGS--HH-------HHHHS--
T ss_pred             ---C-cccccCCCCCCCceeEEEEEEecccccc--cCHHHHHHHHHhCCCCcccccCccccC--hh-------hhccC--
Confidence               2 56665321  1123457888876200 1  234445555566899999998874321  11       00000  


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .. ....+.   .......||+|++.++|.+||+++++.|++++..
T Consensus       344 ~~-~~~~~~---~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~  385 (393)
T 1mdo_A          344 PT-LTLPDT---EWNSERICSLPLFPDMTESDFDRVITALHQIAGQ  385 (393)
T ss_dssp             TT-CCCHHH---HHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC-
T ss_pred             Cc-cCChhH---HHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            00 000000   0011258999999999999999999999988754

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.70  E-value=1.3e-15  Score=161.19  Aligned_cols=274  Identities=12%  Similarity=0.102  Sum_probs=177.5

Q ss_pred             HHHHHHHHc----C--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc--cc
Q 007454          175 MKKRIMDFL----N--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR--LR  224 (603)
Q Consensus       175 aR~~Ia~~l----n--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~--g~  224 (603)
                      .|++|++++    |  +++++++++...                      .+.......++..|+++..+++++.+  ..
T Consensus        69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~  148 (390)
T 1d2f_A           69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWF  148 (390)
T ss_dssp             HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEE
T ss_pred             HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccc
Confidence            677777765    6  677888775321                      12222344556779999998886432  24


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~~  296 (603)
                      ++.++|++.|..     .++++|.++..+|.||.++|   ++.+ ++|+++|+++++|.++..    ++  ...++..+.
T Consensus       149 ~d~~~l~~~l~~-----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~  221 (390)
T 1d2f_A          149 CDMGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVA  221 (390)
T ss_dssp             CCHHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTC
T ss_pred             cCHHHHHHHhcc-----CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcc
Confidence            899999999863     25889998999999999999   5533 578999999999999875    32  133444343


Q ss_pred             C---cEEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          297 P---DFLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       297 ~---Dflv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      +   |. +.|++|+||  +.|  +|+++++ +++.+.+..... |                              .  ..
T Consensus       222 ~~~~d~-~~s~sK~~~--~~G~r~G~~~~~~~~~~~~~~~~~~-~------------------------------~--~~  265 (390)
T 1d2f_A          222 RGDWAL-LTSGSKSFN--IPALTGAYGIIENSSSRDAYLSALK-G------------------------------R--DG  265 (390)
T ss_dssp             CSSEEE-EECSHHHHT--CGGGCCEEEEECSHHHHHHHHHHHH-T------------------------------T--SC
T ss_pred             hhhHhh-ccCccHhhc--ccChhheEEEECCHHHHHHHHHHHh-h------------------------------h--cc
Confidence            3   77 999999998  557  6999986 344332321100 0                              0  01


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .+++|..+.+++.                                        ++++.... .++.+.++.+.+.++|.+
T Consensus       266 ~~~~~~~~~~a~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l~~  304 (390)
T 1d2f_A          266 LSSPSVLALTAHI----------------------------------------AAYQQGAP-WLDALRIYLKDNLTYIAD  304 (390)
T ss_dssp             CCSCCHHHHHHHH----------------------------------------HHHHHCHH-HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHH----------------------------------------HHHhcCHH-HHHHHHHHHHHHHHHHHH
Confidence            2345555543332                                        34443221 256777888889999999


Q ss_pred             HHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          451 ALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       451 ~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      .|.+ ++     |   ++++.|.    -+.++.+.+++. +  ++.. +.++|++++||.++.|..|..           
T Consensus       305 ~L~~~~~-----~---~~~~~~~----~~~~~~~~~~~~-~--~~~~~l~~~l~~~~gi~v~~g~~f~~-----------  358 (390)
T 1d2f_A          305 KMNAAFP-----E---LNWQIPQ----STYLAWLDLRPL-N--IDDNALQKALIEQEKVAIMPGYTYGE-----------  358 (390)
T ss_dssp             HHHHHCS-----S---CCCCCCS----BCSEEEEECGGG-C--CCHHHHHHHHHHTTCEECEEGGGGCG-----------
T ss_pred             HHHhhCC-----C---CEEecCC----ccEEEEEEcccc-C--CCHHHHHHHHHHHcCEEeeCccccCC-----------
Confidence            9987 43     1   4444432    233445677642 1  2233 445565578999999877632           


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             ...+.+|+|++.  +.++++++++.|++.+.+
T Consensus       359 -----------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~  388 (390)
T 1d2f_A          359 -----------------------EGRGFVRLNAGC--PRSKLEKGVAGLINAIRA  388 (390)
T ss_dssp             -----------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                                   012589999997  589999999999888753

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.69  E-value=6.1e-16  Score=162.28  Aligned_cols=267  Identities=10%  Similarity=0.054  Sum_probs=172.1

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccC-chHHH-------------------HHHHHHHcCCEEEEEeccCCccccC-HHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYES-EAVEA-------------------MIRTSEKRGARVMSAEFSWPRLRIN-SEKLR  231 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~-------------------~~~~a~~~Ga~V~~~~~~~~~g~i~-~~~L~  231 (603)
                      .+.|++|++++|+++++++|+... +++..                   ....++..|+++..++.++.+ .++ .+++.
T Consensus        62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~l~~~~  140 (364)
T 1lc5_A           62 FHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREAD-GWQLTDAIL  140 (364)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG-TTCCCTTHH
T ss_pred             HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHcCCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCccc-ccchhHHHH
Confidence            579999999999988899876432 22222                   223345567777777765311 122 23333


Q ss_pred             HHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCC-CCCCCcEEEEcc
Q 007454          232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD--MDSFGL-SLVRPDFLICSF  304 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldl-s~~~~Dflv~S~  304 (603)
                      +.+.      +++++++++..+|.||.++|   ++.+ ++|+++|+++++|.++.....  ...+++ ...+.|+++.|+
T Consensus       141 ~~~~------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~  214 (364)
T 1lc5_A          141 EALT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSL  214 (364)
T ss_dssp             HHCC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEES
T ss_pred             Hhcc------CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEEC
Confidence            3332      35788999999999999999   5544 578999999999998864320  012332 346789999999


Q ss_pred             cccCCCCCCc--eEEEE-EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          305 YQIFGENPSG--FGCLF-VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~-vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      +|+||  +.|  +|+++ .++++++.+.+..                                     ...+.|..+..+
T Consensus       215 sK~~~--~~G~r~G~~~~~~~~~~~~l~~~~-------------------------------------~~~~~~~~~~~~  255 (364)
T 1lc5_A          215 TKFYA--IPGLRLGYLVNSDDAAMARMRRQQ-------------------------------------MPWSVNALAALA  255 (364)
T ss_dssp             TTTTT--CTTTCCEEEECCCHHHHHHHHHHS-------------------------------------CTTCSCHHHHHH
T ss_pred             chhhc--CCccceEEEEECCHHHHHHHHHhC-------------------------------------CCCCCCHHHHHH
Confidence            99998  446  69998 7766544333110                                     112233333332


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +.                                        ++++..  -.++.+.++.+.++++|.+.|.+++     
T Consensus       256 ~~----------------------------------------~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~~-----  288 (364)
T 1lc5_A          256 GE----------------------------------------VALQDS--AWQQATWHWLREEGARFYQALCQLP-----  288 (364)
T ss_dssp             HH----------------------------------------HGGGCH--HHHHHHHHHHHHHHHHHHHHHHTST-----
T ss_pred             HH----------------------------------------HHHhCc--HHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence            22                                        233221  1356777788888999999998752     


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK  541 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~  541 (603)
                         .++++.+     .++.+.+.+++ +..    .++++|. ++||.++.|..|..                        
T Consensus       289 ---~~~~~~~-----~g~~~~~~~~~-~~~----~l~~~l~-~~gi~v~~g~~~~~------------------------  330 (364)
T 1lc5_A          289 ---LLTVYPG-----RANYLLLRCER-EDI----DLQRRLL-TQRILIRSCANYPG------------------------  330 (364)
T ss_dssp             ---TEEECCC-----SSSEEEEEESC-TTC----CHHHHHH-TTTEECEECTTSTT------------------------
T ss_pred             ---CCEECCC-----CCeEEEEECCC-cHH----HHHHHHH-HCCcEEeeCcccCC------------------------
Confidence               2676532     46788888864 221    2355555 56999998866531                        


Q ss_pred             cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                ...+.+|+|++   +.+|+++|+++|++++..
T Consensus       331 ----------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~  359 (364)
T 1lc5_A          331 ----------LDSRYYRVAIR---SAAQNERLLAALRNVLTG  359 (364)
T ss_dssp             ----------CCTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred             ----------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence                      11258999965   799999999999988653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.69  E-value=1.5e-16  Score=168.89  Aligned_cols=281  Identities=14%  Similarity=0.120  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      .+.|++|++++|+++++++++...                      .+.......++..|+++..++.++ ++ ++.++|
T Consensus        77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~-~d~~~l  154 (397)
T 2zyj_A           77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-EG-PDLDAL  154 (397)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE-ECHHHH
T ss_pred             HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-CC-CCHHHH
Confidence            478999999999888888775321                      112223344566788888888874 44 899999


Q ss_pred             HHHHhhcCCCCCCeeEE-EEeCccccccccccHH---H-HHHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc-----
Q 007454          231 RKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL---W-MRIAQENDWHILIDACALGPKD--MDSFGLSLVRPD-----  298 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~---~-i~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D-----  298 (603)
                      ++.|..     .++++| +++..+|.||.++|.+   . +++|+++|+++++|.++....-  -...++..+++|     
T Consensus       155 ~~~l~~-----~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (397)
T 2zyj_A          155 EEVLKR-----ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG  229 (397)
T ss_dssp             HHHHHH-----CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred             HHHHhh-----cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence            999974     146676 6899999999999986   2 3468999999999999876320  013444444333     


Q ss_pred             -EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          299 -FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       299 -flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                       +++.|++|+|| +..++|++++++++++.+....            .                    .  ...|+ |..
T Consensus       230 ~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~------------~--------------------~--~~~~~-~~~  273 (397)
T 2zyj_A          230 VIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAK------------Q--------------------G--ADLHT-PML  273 (397)
T ss_dssp             EEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHH------------H--------------------H--HHSSC-CHH
T ss_pred             EEEEeccccccc-ccceeEEEecCHHHHHHHHHHH------------H--------------------h--hcCCC-CHH
Confidence             89999999999 3234799998866543332100            0                    0  11233 322


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      +..++.                                        ++++....-.++.+.++.+..+++|.+.|.+.- 
T Consensus       274 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-  312 (397)
T 2zyj_A          274 NQMLVH----------------------------------------ELLKEGFSERLERVRRVYREKAQAMLHALDREV-  312 (397)
T ss_dssp             HHHHHH----------------------------------------HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHH----------------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            222211                                        223211000245667777888888999887631 


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                      +.     .++++.|.    .+..+.+.+++  +  ++...+.+.+.++||.++.|..|...                   
T Consensus       313 ~~-----g~~~~~~~----~g~~~~~~~~~--~--~~~~~~~~~l~~~gi~v~~g~~f~~~-------------------  360 (397)
T 2zyj_A          313 PK-----EVRYTRPK----GGMFVWMELPK--G--LSAEGLFRRALEENVAFVPGGPFFAN-------------------  360 (397)
T ss_dssp             CT-----TSEECCCS----BSSEEEEECST--T--CCHHHHHHHHHHTTEEEEESGGGCTT-------------------
T ss_pred             CC-----CeEEccCC----ccEEEEEEcCC--C--CCHHHHHHHHHHCCCEEechHHhcCC-------------------
Confidence            10     14555542    46678888763  1  23333444444559999988765421                   


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                   ....+.+|+|++.. |.+||+++++.|++++++
T Consensus       361 -------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~  392 (397)
T 2zyj_A          361 -------------GGGENTLRLSYATL-DREGIAEGVRRLGRALKG  392 (397)
T ss_dssp             -------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             -------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence                         01236899999996 999999999999998865

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.69  E-value=2.1e-16  Score=168.78  Aligned_cols=311  Identities=11%  Similarity=0.069  Sum_probs=190.8

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-  184 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-  184 (603)
                      .+.++|+.+..+ +.++.+++++ +.+...        +    +    .+..+           ....+.|++|+++++ 
T Consensus        43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~--------~----~----~y~~~-----------~g~~~l~~~la~~~~~   94 (409)
T 2gb3_A           43 VRIHHLNIGQPDLKTPEVFFERI-YENKPE--------V----V----YYSHS-----------AGIWELREAFASYYKR   94 (409)
T ss_dssp             CEEEECSSCCCCSCCCTHHHHHH-HHTCCS--------S----C----CCCCT-----------TCCHHHHHHHHHHHHH
T ss_pred             CCEEeccCCCCCCCCCHHHHHHH-HHHhcC--------C----C----CCCCC-----------CCcHHHHHHHHHHHHH
Confidence            346888887776 3567788887 654210        0    0    00100           012367777777764 


Q ss_pred             -----CCCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhh
Q 007454          185 -----ISENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVS  236 (603)
Q Consensus       185 -----a~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~  236 (603)
                           +++++++++... +++.                     .+...++..|+++..++.++ .+..+ .++|++.|. 
T Consensus        95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~-  172 (409)
T 2gb3_A           95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN-  172 (409)
T ss_dssp             TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC-
T ss_pred             HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC-
Confidence                 556777664321 1111                     12334455688888888763 12233 667777664 


Q ss_pred             cCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCCC---CCCCCCCC-CCCcEEEEcccccC
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPKD---MDSFGLSL-VRPDFLICSFYQIF  308 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~~---m~~ldls~-~~~Dflv~S~hK~f  308 (603)
                           +++++++++..+|.||.++|.   +.+ ++|+++|+++++|.++....-   +.++ +.. .+.|+++.|+||+|
T Consensus       173 -----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~  246 (409)
T 2gb3_A          173 -----ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKF  246 (409)
T ss_dssp             -----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTT
T ss_pred             -----cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhcc
Confidence                 268999999999999999874   433 478999999999999876430   1122 333 36799999999999


Q ss_pred             CCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC-CCChhhhhhhhh
Q 007454          309 GENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA-TNTFSGPMSIEM  384 (603)
Q Consensus       309 G~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G-T~n~~gi~gl~~  384 (603)
                      |  +.|  +|++++++ ++++.+.+..                                     ..+ ++|.....++. 
T Consensus       247 g--~~G~r~G~~~~~~~~l~~~l~~~~-------------------------------------~~~~~~~~~~~~a~~-  286 (409)
T 2gb3_A          247 S--ACGARVGCLITRNEELISHAMKLA-------------------------------------QGRLAPPLLEQIGSV-  286 (409)
T ss_dssp             T--CGGGCCEEEECSCHHHHHHHHHHH-------------------------------------HHSCCCCHHHHHHHH-
T ss_pred             C--CccceEEEEEECcHHHHHHHHHHH-------------------------------------hccCCCCHHHHHHHH-
Confidence            9  558  89999887 6543332100                                     011 33333332222 


Q ss_pred             hhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          385 RQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       385 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                             ++++.. .-+++.+.++.+.+.+++.+.|.++      |  
T Consensus       287 ---------------------------------------~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~------g--  318 (409)
T 2gb3_A          287 ---------------------------------------GLLNLD-DSFFDFVRETYRERVETVLKKLEEH------G--  318 (409)
T ss_dssp             ---------------------------------------HHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT------T--
T ss_pred             ---------------------------------------HHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHc------C--
Confidence                                                   233221 1135677788888999999999875      2  


Q ss_pred             eEEE-eCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhc-----CCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          465 LVKI-YGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADR-----ENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       465 lv~I-ygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~-----~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                       +++ +.|    ..+..+.+.+++.+    ..++.++|+++     +||.++.|..|...                    
T Consensus       319 -~~~~~~~----~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--------------------  369 (409)
T 2gb3_A          319 -LKRFTKP----SGAFYITAELPVED----AEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------------  369 (409)
T ss_dssp             -CCCBCCC----SBSSEEEEECSSSC----HHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------------
T ss_pred             -ceeeeCC----CeeEEEEEEeCCCC----HHHHHHHHHhccccccCcEEEeCchHhCCC--------------------
Confidence             233 333    22444444665322    12345556655     59999988665321                    


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                 .....+.+|+|++  ++.+||+++++.|++++..
T Consensus       370 -----------~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~  401 (409)
T 2gb3_A          370 -----------PGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM  401 (409)
T ss_dssp             -----------TTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence                       0112368999999  8999999999999998865

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.69  E-value=7.4e-16  Score=163.31  Aligned_cols=275  Identities=11%  Similarity=0.062  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHc----C--CCCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCCcc-
Q 007454          173 SAMKKRIMDFL----N--ISENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWPRL-  223 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g-  223 (603)
                      .+.|++|++++    |  +++++++++... +++.                     .....++..|+++..++.++.++ 
T Consensus        69 ~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~  148 (399)
T 1c7n_A           69 EEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGY  148 (399)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTE
T ss_pred             HHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCC
Confidence            46677777764    6  667788775431 1222                     22334456688888877753333 


Q ss_pred             -ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCC
Q 007454          224 -RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSL  294 (603)
Q Consensus       224 -~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~  294 (603)
                       .++.++|++.|..     .++++|+++..+|.||.++|   ++.+ ++|+++|+++++|.++..    ++  ...++..
T Consensus       149 ~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~  221 (399)
T 1c7n_A          149 YTIDFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQS  221 (399)
T ss_dssp             EECCHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGG
T ss_pred             EEEcHHHHHHHhcc-----CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHH
Confidence             4899999999963     26889999999999999999   6644 578999999999999875    32  1234433


Q ss_pred             C-----CCcEEEEcccccCCCCCCc--eEEEEEeC-CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccc
Q 007454          295 V-----RPDFLICSFYQIFGENPSG--FGCLFVKK-STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSK  366 (603)
Q Consensus       295 ~-----~~Dflv~S~hK~fG~~P~G--~G~L~vkk-~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  366 (603)
                      +     +.++++.|++|+||  +.|  +|++++++ ++++.+.+..            .                    .
T Consensus       222 ~~~~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~~l~~~~------------~--------------------~  267 (399)
T 1c7n_A          222 IDEQLADKTITFTAPSKTFN--IAGMGMSNIIIKNPDIRERFTKSR------------D--------------------A  267 (399)
T ss_dssp             SCHHHHTTEEEEECSHHHHT--CGGGCCEEEECCCHHHHHHHHHHH------------H--------------------H
T ss_pred             cCccccCcEEEEEeChhhcc--ccchheEEEEECCHHHHHHHHHHH------------h--------------------h
Confidence            2     45789999999999  457  69999864 3443332100            0                    0


Q ss_pred             cccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHH
Q 007454          367 QEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLIN  446 (603)
Q Consensus       367 ~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~  446 (603)
                        +..+++|..+.+++.                                        ++++... -.++.+.++.+.+++
T Consensus       268 --~~~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~  304 (399)
T 1c7n_A          268 --TSGMPFTTLGYKACE----------------------------------------ICYKECG-KWLDGCIKVIDKNQR  304 (399)
T ss_dssp             --TTCCCCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHH
T ss_pred             --cccCCCCHHHHHHHH----------------------------------------HHHhCCh-HHHHHHHHHHHHHHH
Confidence              112344554443332                                        3444211 136677788889999


Q ss_pred             HHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCE-EEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchh
Q 007454          447 WLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKY  523 (603)
Q Consensus       447 ~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~i-vsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~  523 (603)
                      +|.+.|.+ ++     |   ++++.|     .++. +.+.+++. +  ++.. +.++|++++||.++.|..|...     
T Consensus       305 ~l~~~L~~~~~-----~---~~~~~~-----~~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~-----  363 (399)
T 1c7n_A          305 IVKDFFEVNHP-----E---IKAPLI-----EGTYLQWIDFRAL-K--MDHKAMEEFMIHKAQIFFDEGYIFGDG-----  363 (399)
T ss_dssp             HHHHHHHHHCT-----T---SBCCCC-----SBSSEEEEECGGG-C--CCHHHHHHHHHHTTCCCCEEGGGGCGG-----
T ss_pred             HHHHHHHhhCC-----C---CeEecC-----CceEEEEEEcccC-C--CCHHHHHHHHHHhCCEEEeCccccCCC-----
Confidence            99999987 53     2   344433     2344 44677642 1  2233 4555656889999988766320     


Q ss_pred             hhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          524 QKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       524 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                   ..+.||+|++..  .++++++++.|++++++
T Consensus       364 -----------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~  392 (399)
T 1c7n_A          364 -----------------------------GIGFERINLAAP--SSVIQESLERLNKALKD  392 (399)
T ss_dssp             -----------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHH
T ss_pred             -----------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHH
Confidence                                         125899999975  79999999999988865

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.69  E-value=7.4e-16  Score=161.41  Aligned_cols=302  Identities=12%  Similarity=0.065  Sum_probs=189.4

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      ++.++|+.+... +.++.+++++.+.+...         ...      ....+...          ..+.|++|++++|+
T Consensus        26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---------~~~------~~~y~~~~----------~~~lr~~la~~~g~   80 (360)
T 3hdo_A           26 ASWIKLNTNENPYPPSPEVVKAILEELGPD---------GAA------LRIYPSAS----------SQKLREVAGELYGF   80 (360)
T ss_dssp             TTSEECSSCCCSSCCCHHHHHHHHHHHTTT---------CGG------GGSCCCSS----------CHHHHHHHHHHHTC
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHHhcc---------cch------hhcCCCCc----------hHHHHHHHHHHhCc
Confidence            456888877665 35678888877643210         000      00111111          24789999999999


Q ss_pred             CCCcEEEeccC-chHH---------------------HHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCC
Q 007454          186 SENDYVYDYES-EAVE---------------------AMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQ  243 (603)
Q Consensus       186 ~~~e~vf~~es-~sV~---------------------~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~  243 (603)
                      ++++++++... +++.                     .....++..|+++..++.+. ++.+  ++|.+.        .+
T Consensus        81 ~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~--~~l~~~--------~~  149 (360)
T 3hdo_A           81 DPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG-DFRI--AGFPER--------YE  149 (360)
T ss_dssp             CGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT-TSSB--TTCCSS--------BC
T ss_pred             CcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC-CCCH--HHHHhh--------cC
Confidence            99999876432 1222                     22334455677777777752 3333  222111        13


Q ss_pred             eeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccC--CCCCCCCCC-CCCCCcEEEEcccccCCCCCCceEEEE
Q 007454          244 RGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALG--PKDMDSFGL-SLVRPDFLICSFYQIFGENPSGFGCLF  319 (603)
Q Consensus       244 t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~--~~~m~~ldl-s~~~~Dflv~S~hK~fG~~P~G~G~L~  319 (603)
                      +++++++..+|.||.++|++.+ ++|+++|+++++|.++..  ++  ..+.+ ...+.++++.|++|.||.+..++|+++
T Consensus       150 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  227 (360)
T 3hdo_A          150 GKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAES--NALELVRRHENVVVTRTLSKSYSLAGMRIGLAI  227 (360)
T ss_dssp             SSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSC--CCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEE
T ss_pred             CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCc--chhHHhccCCCEEEEecchHhhcCCccceeeEe
Confidence            5699999999999999999966 589999999999998763  32  12222 234566889999999983222368887


Q ss_pred             EeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHh
Q 007454          320 VKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVR  399 (603)
Q Consensus       320 vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~  399 (603)
                      .++++.+.+...                                     ....+.|..+..++.                
T Consensus       228 ~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~a~~----------------  254 (360)
T 3hdo_A          228 ARPEVIAALDKI-------------------------------------RDHYNLDRLAQAACV----------------  254 (360)
T ss_dssp             CCHHHHHHHHHH-------------------------------------SCSCCSCHHHHHHHH----------------
T ss_pred             eCHHHHHHHHHh-------------------------------------CCCCCCCHHHHHHHH----------------
Confidence            755443322210                                     011233444433322                


Q ss_pred             hhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCC
Q 007454          400 RAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGP  479 (603)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~  479 (603)
                                              ++++..+  .++.+.++.+.++++|.+.|.++      |   +.++.+     .+.
T Consensus       255 ------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------~---~~~~~~-----~~~  294 (360)
T 3hdo_A          255 ------------------------AALRDQA--YLSECCRRIRETREWFTTELRSI------G---YDVIPS-----QGN  294 (360)
T ss_dssp             ------------------------HHHHCHH--HHHHHHHHHHHHHHHHHHHHHHT------T---CEECCC-----SSS
T ss_pred             ------------------------HHhcCHH--HHHHHHHHHHHHHHHHHHHHHHC------C---CEEcCC-----Ccc
Confidence                                    3444311  36777888899999999999875      2   445432     467


Q ss_pred             EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          480 ALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       480 ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      .+.+.+++.     +...+.+.+.++||.++.|..  .                                  ...+.||+
T Consensus       295 ~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~--~----------------------------------~~~~~iRi  333 (360)
T 3hdo_A          295 YLFATPPDR-----DGKRVYDGLYARKVLVRHFSD--P----------------------------------LLAHGMRI  333 (360)
T ss_dssp             EEEEECTTC-----CHHHHHHHHHHTTEECBCCCS--T----------------------------------TTTTSEEE
T ss_pred             EEEEECCCC-----CHHHHHHHHHHCCEEEEECCC--C----------------------------------CCCCEEEE
Confidence            788877653     344555566678999986532  0                                  01258999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          560 SLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |++   |.+|+++|+++|+++-+.
T Consensus       334 s~~---~~~e~~~l~~al~~~~~~  354 (360)
T 3hdo_A          334 SIG---TREEMEQTLAALKEIGEG  354 (360)
T ss_dssp             ECC---CHHHHHHHHHHHHHHHC-
T ss_pred             EcC---CHHHHHHHHHHHHHHhcc
Confidence            987   999999999999987543

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.69  E-value=5.8e-16  Score=163.84  Aligned_cols=275  Identities=13%  Similarity=0.089  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCc-c
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPR-L  223 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~-g  223 (603)
                      .+.|++|+++++      +++++++++...                      .+.......++..|+++..+++++.+ .
T Consensus        71 ~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~  150 (391)
T 3h14_A           71 PALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRL  150 (391)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTT
T ss_pred             HHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCC
Confidence            467888888875      678888775321                      12223345566789999999886321 2


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCC-CCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPKD-MDSFGLSL-VRP  297 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~-~~~  297 (603)
                      .++.++|++.         ++++|+++..+|.||.++|.   +.+ ++|+++|+++++|.++..... -.+..+.. .+.
T Consensus       151 ~~d~~~l~~~---------~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  221 (391)
T 3h14_A          151 QPVPADFAGL---------DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE  221 (391)
T ss_dssp             SCCHHHHTTS---------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred             CCCHHHHHhc---------CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence            5688877654         47899999999999999994   433 468999999999998764210 00222222 345


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++++.|++|+||.+..++|++++++++.+.+...                                 ..  ...+++|..
T Consensus       222 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---------------------------------~~--~~~~~~~~~  266 (391)
T 3h14_A          222 CYVINSFSKYFSMTGWRVGWMVVPEDQVRVVERI---------------------------------AQ--NMFICAPHA  266 (391)
T ss_dssp             SEEEEESSSTTCCTTSCCEEEECCGGGHHHHHHH---------------------------------HH--HTTCCCCHH
T ss_pred             EEEEEechhccCCccceeEEEEeCHHHHHHHHHH---------------------------------Hh--hhccCCCHH
Confidence            6888899999983223378888766554332210                                 00  113344444


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      +..++.                                        ++++  ..-.++.+.++.+.++++|.+.|.++. 
T Consensus       267 ~~~a~~----------------------------------------~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~-  303 (391)
T 3h14_A          267 SQVAAL----------------------------------------AALD--CDAELQANLDVYKANRKLMLERLPKAG-  303 (391)
T ss_dssp             HHHHHH----------------------------------------HHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHH----------------------------------------HHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence            433322                                        2333  111356777888889999999998752 


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                           .  +.++.|    .-+..+.+.++...   ++. +++++|++++||.++.|..|...                  
T Consensus       304 -----~--~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~------------------  351 (391)
T 3h14_A          304 -----F--TRIAPP----DGAFYVYADVSDLT---DDSRAFAAEILEKAGVAVTPGLDFDPE------------------  351 (391)
T ss_dssp             -----C--CCBCCC----CBTTEEEEECTTTC---SCHHHHHHHHHHHHCEECEEGGGTCTT------------------
T ss_pred             -----C--CcccCC----CeeEEEEEecCccC---CCHHHHHHHHHHHCCEEEcCchhhCCC------------------
Confidence                 1  222222    12345555665321   122 34566777779999999887531                  


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                     ...+.||+|++.  +.+||+++++.|++++.+
T Consensus       352 ---------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~~  381 (391)
T 3h14_A          352 ---------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQA  381 (391)
T ss_dssp             ---------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence                           112689999998  789999999999988764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.69  E-value=8.2e-16  Score=163.69  Aligned_cols=325  Identities=10%  Similarity=0.080  Sum_probs=191.1

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchH-HHHHHHHHHHHHHHcCCCCCcEEE
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQE-SGLESAMKKRIMDFLNISENDYVY  192 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~-~~~~~~aR~~Ia~~lna~~~e~vf  192 (603)
                      .++..++++.+++++.+.+...                 |..+++.+.+..+... ....+.+|+.+++++|+++..+++
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~v~~  100 (425)
T 3ecd_A           38 IASENIVSRAVLDAQGSVLTNK-----------------YAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHANVQP  100 (425)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGSS-----------------CTTC------------CCHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             ecccCCCCHHHHHHHhhhhhcc-----------------cccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCceeec
Confidence            4556677999999987654211                 1123443333222221 245566788999999987644422


Q ss_pred             eccCchHHHHHHHHHHc------------------------CC--EEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454          193 DYESEAVEAMIRTSEKR------------------------GA--RVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL  246 (603)
Q Consensus       193 ~~es~sV~~~~~~a~~~------------------------Ga--~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L  246 (603)
                      ...++++..++..+.+.                        |.  ++..++++..++.++.++|++.|...     ++++
T Consensus       101 ~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~  175 (425)
T 3ecd_A          101 HSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH-----KPSL  175 (425)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHH-----CCSE
T ss_pred             CchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhc-----CCcE
Confidence            22222222222222112                        22  33334443224678999999999732     4778


Q ss_pred             EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCC--CCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDM--DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m--~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      |.+...+|  |...+++.+ ++|+++|+++++|.+|..+.-.  ..... .-.+|++++|+||+|++ |. .|+++.++.
T Consensus       176 v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~-~~~~di~~~s~sK~l~g-~~-~g~~~~~~~  250 (425)
T 3ecd_A          176 IIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP-VEHAHVVTSTTHKTLRG-PR-GGFVLTNDE  250 (425)
T ss_dssp             EEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG-GGTCSEEEEESSGGGCC-CS-CEEEEESCH
T ss_pred             EEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCc-hhcCcEEEecCCcccCC-CC-cEEEEeCCH
Confidence            88775444  889999865 5899999999999997543200  01111 11389999999999875 65 488887753


Q ss_pred             -CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          324 -TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       324 -~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                       +...+.+..+.|                                  ..|+++...++++.                   
T Consensus       251 ~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~a~~-------------------  277 (425)
T 3ecd_A          251 EIAKKINSAVFPG----------------------------------LQGGPLMHVIAGKA-------------------  277 (425)
T ss_dssp             HHHHHHHHHHC---------------------------------------CCCHHHHHHHH-------------------
T ss_pred             HHHHHHHhhhCcc----------------------------------ccCCccHHHHHHHH-------------------
Confidence             222222110000                                  12344555544433                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           .++.....-+++.+.++.+.+.++|.+.|.++      |   ++++.|.   ..+.++.
T Consensus       278 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~---~~~~~~~  324 (425)
T 3ecd_A          278 ---------------------VAFGEALTDDFKTYIDRVLANAQALGDVLKAG------G---VDLVTGG---TDNHLLL  324 (425)
T ss_dssp             ---------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGGS---CSSSEEE
T ss_pred             ---------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC------C---CeeccCC---CCceEEE
Confidence                                 34433222256788888999999999999874      2   4555432   3467888


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      +.+.+..   ++...+.+++.++||.++.+..  ++...                            .....+.+|++++
T Consensus       325 ~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~--p~~~~----------------------------~~~~~~~iRi~~~  371 (425)
T 3ecd_A          325 VDLRPKG---LKGAQVEQALERAGITCNKNGI--PFDPE----------------------------KPTITSGIRLGTP  371 (425)
T ss_dssp             EECGGGT---CCHHHHHHHHHHTTEECEECCC--TTCSS----------------------------CTTTCSEEEEESH
T ss_pred             EEeCCCC---CCHHHHHHHHHHcCCEeccccc--CCCCC----------------------------CCCCccceeccch
Confidence            8876421   3456677777889999997642  11110                            0112258999988


Q ss_pred             CCCC----HHHHHHHHHHHHHHHhhh
Q 007454          563 YLAN----FEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       563 ~~tt----~eDVd~l~~~l~~~l~~~  584 (603)
                      .+++    .+||+++++.|++.++..
T Consensus       372 ~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          372 AGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hheeccCCHHHHHHHHHHHHHHHhcc
Confidence            7776    999999999999998764

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.68  E-value=6e-16  Score=163.38  Aligned_cols=243  Identities=12%  Similarity=0.130  Sum_probs=155.6

Q ss_pred             HHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvD  278 (603)
                      ..++..|+++..++.+.. +..++.++|++.|..      ++++|+++..+|.||.++|   ++.+ ++|+++|+++++|
T Consensus       129 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D  202 (388)
T 1j32_A          129 EMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD  202 (388)
T ss_dssp             HHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            445667889988887632 356899999998863      5899999999999999988   5534 4789999999999


Q ss_pred             ccccCCCC--CCCCCCCC-----CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccc
Q 007454          279 ACALGPKD--MDSFGLSL-----VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLT  349 (603)
Q Consensus       279 Aaq~~~~~--m~~ldls~-----~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~  349 (603)
                      .++....-  -....+..     .+.|+++.|+||+||  +.|  +|++++++++++.+.+..                 
T Consensus       203 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~-----------------  263 (388)
T 1j32_A          203 EIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA--MTGWRVGFLAGPVPLVKAATKIQ-----------------  263 (388)
T ss_dssp             CTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT--CTTTCCEEEECCHHHHHHHHHHH-----------------
T ss_pred             ccchhcccCCCCCCCHHHccccccCCEEEEeechhccC--CcccceEEEEeCHHHHHHHHHHH-----------------
Confidence            98764210  00111221     457999999999998  668  999998876544333110                 


Q ss_pred             cccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH
Q 007454          350 DEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV  429 (603)
Q Consensus       350 ~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~  429 (603)
                                          ..+|.+.+.+...+             +.                         ++++..
T Consensus       264 --------------------~~~~~~~~~~~~~a-------------~~-------------------------~~l~~~  285 (388)
T 1j32_A          264 --------------------GHSTSNVCTFAQYG-------------AI-------------------------AAYENS  285 (388)
T ss_dssp             --------------------HTTTCSCCHHHHHH-------------HH-------------------------HHHHSC
T ss_pred             --------------------hhcccCCCHHHHHH-------------HH-------------------------HHHhCC
Confidence                                01111111111110             00                         233211


Q ss_pred             HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcE
Q 007454          430 DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENIS  508 (603)
Q Consensus       430 ~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~  508 (603)
                       .-.++.+.++.+.+.++|.+.|.+++     |   +++++|.    .+..+.+.+... +  ++. ++.++|++++||.
T Consensus       286 -~~~~~~~~~~~~~~~~~l~~~L~~~~-----g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~  349 (388)
T 1j32_A          286 -QDCVQEMLAAFAERRRYMLDALNAMP-----G---LECPKPD----GAFYMFPSIAKT-G--RSSLDFCSELLDQHQVA  349 (388)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHTCT-----T---CBCCCCC----BTTEECCBCGGG-T--CCHHHHHHHHHHHHCEE
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhhCC-----C---CcccCCC----eeEEEEEecCCC-C--CCHHHHHHHHHHhCCEE
Confidence             01256677788889999999998763     2   4455442    122333344321 1  223 3455566668999


Q ss_pred             EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++.|..|..                                    .+.||+|++  ++.|||+++++.|+++++.
T Consensus       350 v~~g~~~~~------------------------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~~  386 (388)
T 1j32_A          350 TVPGAAFGA------------------------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHG  386 (388)
T ss_dssp             CEEGGGGTC------------------------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             EeChhhhCC------------------------------------CCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence            988754421                                    157999998  7999999999999988764

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.68  E-value=7.2e-16  Score=167.18  Aligned_cols=330  Identities=12%  Similarity=0.055  Sum_probs=191.7

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .+..|||+++..+. +.+++++.+.+...         .       ..+++.           ....+.|++|++++|. 
T Consensus        39 ~~~~ylD~~~~~~~-~~v~~a~~~~l~~~---------~-------~~y~~~-----------~~~~~l~~~la~~~~~-   89 (467)
T 2oqx_A           39 SEDVFIDLLTDSGT-GAVTQSMQAAMMRG---------D-------EAYSGS-----------RSYYALAESVKNIFGY-   89 (467)
T ss_dssp             GGGCSEECSCCSSC-SCCCHHHHHHTTSC---------C-------CCSSSC-----------HHHHHHHHHHHHHHCC-
T ss_pred             CCCeeEecccCCCc-HHHHHHHHHHhccC---------c-------ceeccC-----------chhHHHHHHHHHHhCc-
Confidence            45789999888776 66666665543210         0       001111           2245789999999986 


Q ss_pred             CCcEEEecc-CchHHHHHHHHHHc-----C----CEEEEEecc-------------------------C-----CccccC
Q 007454          187 ENDYVYDYE-SEAVEAMIRTSEKR-----G----ARVMSAEFS-------------------------W-----PRLRIN  226 (603)
Q Consensus       187 ~~e~vf~~e-s~sV~~~~~~a~~~-----G----a~V~~~~~~-------------------------~-----~~g~i~  226 (603)
                       ++++|+.. ++++...+..+.+.     |    .+|.....-                         -     .++.++
T Consensus        90 -~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  168 (467)
T 2oqx_A           90 -QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFD  168 (467)
T ss_dssp             -SEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBC
T ss_pred             -CcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcC
Confidence             56777653 34555555554444     6    554432100                         0     134578


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHH---HH-HHHHhCCcEEEEeccccC-----------CCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL---WM-RIAQENDWHILIDACALG-----------PKDMDSF  290 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~---~i-~~a~e~g~~vlvDAaq~~-----------~~~m~~l  290 (603)
                      .++|+++|....  .+++++|++...+|.+ |.++|.+   .+ ++|+++|+++++|++|..           +.  ..+
T Consensus       169 ~~~Le~~i~~~~--~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~--~g~  244 (467)
T 2oqx_A          169 LEGLERGIEEVG--PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY--KDW  244 (467)
T ss_dssp             HHHHHHHHHHHC--GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGG--TTS
T ss_pred             HHHHHHHHHhcC--CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccc--cCc
Confidence            999999997421  1258999999999998 8887754   33 478999999999998766           33  223


Q ss_pred             CCCC------CCCcEEEEcccccCCCCCCceEEEEEeCC-CCcC---cCCCC-CCCceeccccccccccccccCCCCCCc
Q 007454          291 GLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPI---LVDNT-SSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       291 dls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~---L~p~~-~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                      ++..      ..+|++++|+||+||. |.| |+++.++. +++.   +++.. ++|..                      
T Consensus       245 ~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  300 (467)
T 2oqx_A          245 TIEQITRETYKYADMLAMSAKKDAMV-PMG-GLLCMKDDSFFDVYTECRTLCVVQEGF----------------------  300 (467)
T ss_dssp             CHHHHHHHHGGGCSEEEEESSSTTCC-SSC-EEEEECSGGGHHHHHHHHHHHHHTTSS----------------------
T ss_pred             cHHHHhhhhhccCCeEEEecccccCC-CCc-eEEEecChhHHHHHHHHHHhhhccCCc----------------------
Confidence            3322      2489999999999995 655 66666666 3322   22110 11100                      


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                               ...|+.+..++.++.                                        .+++.  .+.-+.+ +
T Consensus       301 ---------~~~~~~~~~~~~al~----------------------------------------~~l~~--~~~~~~~-~  328 (467)
T 2oqx_A          301 ---------PTYGGLEGGAMERLA----------------------------------------VGLYD--GMNLDWL-A  328 (467)
T ss_dssp             ---------CCCCCCCHHHHHHHH----------------------------------------HHHHH--TTCHHHH-H
T ss_pred             ---------ccccchhhhHHHHHH----------------------------------------HhhHh--hhhHHHH-H
Confidence                     012333333332222                                        22221  1111122 3


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc----CCCCcc-CHHHHHHHHhcCCcEEeeCcc
Q 007454          440 RGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD----WKREKI-EPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~----~~g~~v-~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      +.+.+.++|.+.|.++      |.   .+. |    .++.++.|.+.+    .+...+ ...+..+|+.++||.++.|..
T Consensus       329 ~~~~~~~~l~~~L~~~------~~---~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~  394 (467)
T 2oqx_A          329 YRIAQVQYLVDGLEEI------GV---VCQ-Q----AGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGS  394 (467)
T ss_dssp             HHHHHHHHHHHHHHHT------TC---CEE-E----ECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESH
T ss_pred             HHHHHHHHHHHHHHHC------CC---eee-c----CCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccc
Confidence            3456778888888775      22   233 4    246678888742    333222 222345554788999987544


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~  583 (603)
                      |..+.....          +        ..     .....+.||+|++.. +|.+||+++++.|+++++.
T Consensus       395 ~~~~~~~~~----------g--------~~-----~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~  441 (467)
T 2oqx_A          395 FLLGRDPKT----------G--------KQ-----LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN  441 (467)
T ss_dssp             HHHCBCTTT----------C--------SB-----CCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccc----------c--------cc-----ccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence            432210000          0        00     112236999999999 9999999999999999865

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.68  E-value=9.4e-16  Score=163.41  Aligned_cols=299  Identities=13%  Similarity=0.069  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEec-cCchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDY-ESEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~-es~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ....+.|++|++++|++  +.++.. .++++                      ......++..|+++..+++++.++.++
T Consensus        63 ~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d  140 (399)
T 2oga_A           63 PELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLD  140 (399)
T ss_dssp             HHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBC
T ss_pred             hhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcC
Confidence            34568889999999875  343321 11111                      112344566799999998874457899


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCC--CcEEEEc
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVR--PDFLICS  303 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~--~Dflv~S  303 (603)
                      .++|++.|..      ++++|.+   +|.||.+.|++.+ ++|+++|+++++|+++..+.  . .+...++  +|++++|
T Consensus       141 ~~~l~~~i~~------~~~~v~~---~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~--~-~~~~~~~~~~di~~~S  208 (399)
T 2oga_A          141 PLLVEKAITP------RTRALLP---VHLYGHPADMDALRELADRHGLHIVEDAAQAHGA--R-YRGRRIGAGSSVAAFS  208 (399)
T ss_dssp             HHHHHHHCCT------TEEEECC---BCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTC--E-ETTEETTCTTCEEEEE
T ss_pred             HHHHHHhcCC------CCeEEEE---eCCcCCccCHHHHHHHHHHcCCEEEEECcccccC--c-cCCeecccccCEEEEe
Confidence            9999998863      5777763   6899999999865 58999999999999998774  1 2333333  7999999


Q ss_pred             cc--ccCCCCCCc-eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC---CCCh
Q 007454          304 FY--QIFGENPSG-FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA---TNTF  376 (603)
Q Consensus       304 ~h--K~fG~~P~G-~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G---T~n~  376 (603)
                      +|  |+||  |.| .|+++.+ +++.+.+++...+|...      . +          .     ..    ..|   +.+.
T Consensus       209 ~~~sK~~~--~~G~~g~~~~~~~~~~~~l~~~~~~g~~~------~-~----------~-----~~----~~g~~~~~~~  260 (399)
T 2oga_A          209 FYPGKNLG--CFGDGGAVVTGDPELAERLRMLRNYGSRQ------K-Y----------S-----HE----TKGTNSRLDE  260 (399)
T ss_dssp             CCTTSSSC--CSSCCEEEEESCHHHHHHHHHHHBTTCSS------T-T----------C-----CC----SCCCBCCCCH
T ss_pred             CCCCccCC--cCCceEEEEeCCHHHHHHHHHHHhcCccc------c-c----------c-----cc----ccccCCCcCH
Confidence            96  9999  545 4555554 45544444322112100      0 0          0     00    011   1222


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ...+++.                                        ++++.     ++.+.++.+.+.+++.+.|.+++
T Consensus       261 ~~~a~~~----------------------------------------~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~  295 (399)
T 2oga_A          261 MQAAVLR----------------------------------------IRLAH-----LDSWNGRRSALAAEYLSGLAGLP  295 (399)
T ss_dssp             HHHHHHH----------------------------------------HHHHT-----HHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHH----------------------------------------HHHHH-----HHHHHHHHHHHHHHHHHHhccCC
Confidence            2211111                                        34443     44567788889999999998753


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCE-EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPA-LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~i-vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                           |   ++++++.  ....++ +.|.+...     +...+.+.+.++||.++.++..  ....      ...+..++
T Consensus       296 -----g---~~~~~~~--~~~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~~--~~~~------~~~~~~~~  352 (399)
T 2oga_A          296 -----G---IGLPVTA--PDTDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYPV--PVHL------SPAYAGEA  352 (399)
T ss_dssp             -----T---CBCCCCC--TTEECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCSS--CGGG------SHHHHTTS
T ss_pred             -----C---ccccCCC--CCCcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCCC--cccc------chhhcccC
Confidence                 1   3443322  122233 34665542     2344555556689999876421  1000      01111110


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      . .. .....   ......++||+|++.++|.|||+++++.|+++++.
T Consensus       353 ~-~~-~~~p~---~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~  395 (399)
T 2oga_A          353 P-PE-GSLPR---AESFARQVLSLPIGPHLERPQALRVIDAVREWAER  395 (399)
T ss_dssp             C-CT-TSCHH---HHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHS
T ss_pred             C-CC-CCChh---HHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            0 00 00000   00001258999999999999999999999998753

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.68  E-value=3.1e-16  Score=168.93  Aligned_cols=291  Identities=13%  Similarity=0.074  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHc------CCCCCcEEEeccC-chHHHHHHHHHHcCC--------------EEE----------------
Q 007454          172 ESAMKKRIMDFL------NISENDYVYDYES-EAVEAMIRTSEKRGA--------------RVM----------------  214 (603)
Q Consensus       172 ~~~aR~~Ia~~l------na~~~e~vf~~es-~sV~~~~~~a~~~Ga--------------~V~----------------  214 (603)
                      +.+.|++|++++      ++++++++|+... +++..++..+.+.|.              +|.                
T Consensus        85 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~  164 (444)
T 3if2_A           85 DSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVE  164 (444)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSS
T ss_pred             CHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccc
Confidence            457899999998      6788999887653 244444443333333              333                


Q ss_pred             ------------EEeccCCcc----ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcE
Q 007454          215 ------------SAEFSWPRL----RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWH  274 (603)
Q Consensus       215 ------------~~~~~~~~g----~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~  274 (603)
                                  .++++..++    .++.++|++.|...   +++++++.++..+|.||.++|   ++.+ ++|+++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~  241 (444)
T 3if2_A          165 GQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALK---EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIP  241 (444)
T ss_dssp             SCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHH---TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             cchhhccCceEEecccccccCccccCCCHHHHHHHHHhc---CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCE
Confidence                        223221022    57899998874310   136899999999999999999   5433 468999999


Q ss_pred             EEEeccccCCCC---CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccc
Q 007454          275 ILIDACALGPKD---MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDE  351 (603)
Q Consensus       275 vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~  351 (603)
                      +++|.++..+..   ...+.....+.++++.|++|+ +.+..++|+++.++++.+.+....            .      
T Consensus       242 li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~------------~------  302 (444)
T 3if2_A          242 LIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMN------------A------  302 (444)
T ss_dssp             EEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHH------------H------
T ss_pred             EEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHH------------H------
Confidence            999999864320   012222234678999999997 532234676666554433222100            0      


Q ss_pred             cCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh
Q 007454          352 FSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS  431 (603)
Q Consensus       352 ~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~  431 (603)
                                       ....+.+..+..++                                           ...+..
T Consensus       303 -----------------~~~~~~~~~~~~a~-------------------------------------------~~~l~~  322 (444)
T 3if2_A          303 -----------------VVNLAPTRFGAAIA-------------------------------------------TPLVAN  322 (444)
T ss_dssp             -----------------HHHSSCCCHHHHHH-------------------------------------------HHHHHT
T ss_pred             -----------------hccCCCChHHHHHH-------------------------------------------HHHHHc
Confidence                             00011122221111                                           111111


Q ss_pred             cCH----H-HHHHHHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcC
Q 007454          432 LGL----T-MISRRGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRE  505 (603)
Q Consensus       432 iGl----~-~i~~r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~  505 (603)
                      ..+    . .+.++.+...+.+.+.|.+ ++.     . .+.++.|.    .+..+.+.++...   ++...+.+.+.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-----~-~~~~~~~~----~g~~~~~~~~~~~---~~~~~l~~~l~~~  389 (444)
T 3if2_A          323 DRIKQLSDNEIKPFYQKQATLAVKLLKQALGD-----Y-PLMIHKPE----GAIFLWLWFKDLP---ISTLDLYERLKAK  389 (444)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSS-----S-SEEEECCC----BSSEEEEEETTCS---SCHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----C-CceEecCC----ccEEEEEEcCCCC---CCHHHHHHHHHHC
Confidence            111    1 1333444555555555544 321     1 16677653    4667777776421   3344555556788


Q ss_pred             CcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q 007454          506 NISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADF  585 (603)
Q Consensus       506 gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f  585 (603)
                      ||.++.|..|..+....+                          .....+.||+|++.  +.+||+++++.|++++.+-+
T Consensus       390 gi~v~~g~~~~~~~~~~~--------------------------~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~  441 (444)
T 3if2_A          390 GTLIVPSEYFFPGVDVSD--------------------------YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELY  441 (444)
T ss_dssp             TEECEEGGGSCTTCCCTT--------------------------CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEecchhhcCCCCCcc--------------------------cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHH
Confidence            999999999976532210                          01123699999998  99999999999999886543

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.68  E-value=1.4e-15  Score=161.56  Aligned_cols=286  Identities=13%  Similarity=0.101  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHc----C--CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCccc
Q 007454          173 SAMKKRIMDFL----N--ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      .+.|++|++++    |  +++++++++...                      .+.......++..|+++..++.++ ++ 
T Consensus        78 ~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~-  155 (407)
T 2zc0_A           78 PELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-DG-  155 (407)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE-
T ss_pred             HHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-CC-
Confidence            47888888888    8  567788775321                      122223444566788888888874 44 


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEE-EEeCccccccccccHH---HH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCC--
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALGPKD--MDSFGLSLV--  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~--  295 (603)
                      ++.++|++.|...+...+++++| +++..+|.||.++|++   .+ ++|+++|+++++|.++....-  -...++..+  
T Consensus       156 ~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  235 (407)
T 2zc0_A          156 MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDN  235 (407)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred             CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCC
Confidence            89999999987100001257776 6889999999999996   33 478999999999999765320  011223222  


Q ss_pred             -CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          296 -RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       296 -~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                       +.++++.|++|+|| +...+|++++++++++.+.+....                                  ...++ 
T Consensus       236 ~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~----------------------------------~~~~~-  279 (407)
T 2zc0_A          236 EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQP----------------------------------IDFCA-  279 (407)
T ss_dssp             SCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTT----------------------------------TTSSS-
T ss_pred             CCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHh----------------------------------hcCCC-
Confidence             45688999999999 311389999876654433311000                                  00111 


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHH
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV--DSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~--~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      +.....++.                                        .+++..  +.-.++.+.++.+.++++|.+.|
T Consensus       280 ~~~~~~~~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  319 (407)
T 2zc0_A          280 PAISQYIAL----------------------------------------EYLKRGYFEKYHLEGALLGYKEKRDIMLKAL  319 (407)
T ss_dssp             CHHHHHHHH----------------------------------------HHHHTTHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH----------------------------------------HHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            222221111                                        233321  10246677788888999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      .++. +   |   +++++|    ..+..+.|.+++  +  ++. ++.++|.+++||.++.|..|....            
T Consensus       320 ~~~~-~---~---~~~~~~----~~~~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~~~~~~------------  372 (407)
T 2zc0_A          320 ENHL-P---N---AEFTKP----IAGMFVMFFLPE--G--ADGISFANELMEREGVVVVPGKPFYTDE------------  372 (407)
T ss_dssp             HHHC-T---T---SCBCCC----SBSSEEEEECST--T--CCHHHHHHHHHHHTCEECBCSGGGCSSS------------
T ss_pred             HHhC-C---C---CEEecC----CCcEEEEEEcCC--C--CCHHHHHHHHHHhCCeEEECchhccCCC------------
Confidence            7631 1   1   344444    245678888753  1  233 345566666699999887664320            


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                          ...+.+|+|++.. |.+||+++++.|++++++-
T Consensus       373 --------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~  404 (407)
T 2zc0_A          373 --------------------SGKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK  404 (407)
T ss_dssp             --------------------CCTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence                                1136899999988 8999999999999988653

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.67  E-value=6.8e-16  Score=164.85  Aligned_cols=279  Identities=14%  Similarity=0.065  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHc----CC--CC-CcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC-c
Q 007454          173 SAMKKRIMDFL----NI--SE-NDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP-R  222 (603)
Q Consensus       173 ~~aR~~Ia~~l----na--~~-~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~  222 (603)
                      .+.|+.|++++    |+  ++ ++++++... ++                     .......++..|+++..++.+.. +
T Consensus        78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~  157 (412)
T 2x5d_A           78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGID  157 (412)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccC
Confidence            47888888888    85  56 688765321 11                     12223345566888888888643 2


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH---HH-HHHHhCCcEEEEeccccCCCC--CCCCCCCC--
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL---WM-RIAQENDWHILIDACALGPKD--MDSFGLSL--  294 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~---~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~--  294 (603)
                      ..++.++|++.|..      ++++|.++..+|.||.++|.+   .+ ++|+++|+++++|.++....-  -...++..  
T Consensus       158 ~~~d~~~l~~~i~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~  231 (412)
T 2x5d_A          158 FFNELERAIRESIP------KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVP  231 (412)
T ss_dssp             HHHHHHHHHHTEES------CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGST
T ss_pred             CCCCHHHHHHhccc------CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhcc
Confidence            23678888887752      578888999999999999964   23 468999999999999876320  01223322  


Q ss_pred             --CCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          295 --VRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       295 --~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                        .+.|+++.|++|+||  +.|  +|++++++++++.+....                                .   ..
T Consensus       232 ~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~  274 (412)
T 2x5d_A          232 GAKDIAVEFFTLSKSYN--MAGWRIGFMVGNPELVSALARIK--------------------------------S---YH  274 (412)
T ss_dssp             TGGGTEEEEEECC-CCS--CTTSCCEEEEECHHHHHHHHHHH--------------------------------H---HH
T ss_pred             CccCcEEEEecCccccC--CcccceEEEEcCHHHHHHHHHHH--------------------------------h---hh
Confidence              367899999999998  457  799999776554333100                                0   01


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .++.|.....++.                                        ++++... -.++.+.++.+.+.++|.+
T Consensus       275 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~  313 (412)
T 2x5d_A          275 DYGTFTPLQVAAI----------------------------------------AALEGDQ-QCVRDIARQYQQRRDVLVK  313 (412)
T ss_dssp             CCCCCHHHHHHHH----------------------------------------HHHHSCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHH----------------------------------------HHHhCCH-HHHHHHHHHHHHHHHHHHH
Confidence            2333444333222                                        2333211 1256777888889999999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                      .|.++      |   ++++.|    ..+..+.+.++..-+..-...++++|++++||.++.|..|..             
T Consensus       314 ~L~~~------g---~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------  367 (412)
T 2x5d_A          314 GLREA------G---WMVENP----KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD-------------  367 (412)
T ss_dssp             HHHHH------T---CCCCCC----SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG-------------
T ss_pred             HHHHC------C---CEecCC----CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC-------------
Confidence            99875      2   233333    224467777753100000123456666778999998877632             


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                           ...+.||+|++.  +.+|++++++.|+++++..
T Consensus       368 ---------------------~~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~  398 (412)
T 2x5d_A          368 ---------------------YGDDHVRFALIE--NRDRLRQAVRGIKAMFRAD  398 (412)
T ss_dssp             ---------------------GGTTEEEEECCS--CHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHHhc
Confidence                                 012589999997  8999999999999998763

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.67  E-value=9e-16  Score=176.73  Aligned_cols=297  Identities=12%  Similarity=0.050  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC----------------------chHHHHHHH-HHHcCCEEEEEeccCC----c
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES----------------------EAVEAMIRT-SEKRGARVMSAEFSWP----R  222 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es----------------------~sV~~~~~~-a~~~Ga~V~~~~~~~~----~  222 (603)
                      ..+.++++.+|+++|++. .+++...+                      +....+... ++..|+++++++..+.    .
T Consensus       173 ~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~  251 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFI  251 (730)
T ss_dssp             THHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCCE
T ss_pred             HHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccCcc
Confidence            467899999999999864 34332110                      111122233 4567999888876432    2


Q ss_pred             cccCHHHH-----HHHHhhcCCC---CCCe-eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCC--CC----
Q 007454          223 LRINSEKL-----RKMVVSKGKK---KKQR-GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGP--KD----  286 (603)
Q Consensus       223 g~i~~~~L-----~~~l~~~~~~---~~~t-~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~--~~----  286 (603)
                      +.++.++|     +++|..+...   ..++ +++++..- |.+|.++|++.| ++|+++|++|++|+++..+  ..    
T Consensus       252 g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~  330 (730)
T 1c4k_A          252 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMR  330 (730)
T ss_dssp             EEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGG
T ss_pred             CCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccC
Confidence            45777777     8888642000   1112 78888874 689999999966 5899999999999997531  10    


Q ss_pred             -CCCCCCCCCCCc----EEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454          287 -MDSFGLSLVRPD----FLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ  361 (603)
Q Consensus       287 -m~~ldls~~~~D----flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~  361 (603)
                       ..++++..+++|    +++.|+||++|+ |.|.|+++++++.+   ....  ..+..    .. +  ..          
T Consensus       331 g~~~l~~~~~g~D~~~~iv~~S~hK~L~g-~~~gg~I~v~~~~l---~g~~--~~i~~----~~-~--~~----------  387 (730)
T 1c4k_A          331 NSSPLLIDDLGPEDPGIIVVQSVHKQQAG-FSQTSQIHKKDSHI---KGQL--RYCDH----KH-F--NN----------  387 (730)
T ss_dssp             GGCTTSCCCCCTTSCEEEEEECHHHHSSC-CTTCEEEEEECGGG---TTST--TCCCH----HH-H--HH----------
T ss_pred             CcCcccccccCCCCCCEEEEECCCCCCCC-CCCEEEEEecchhh---cCcc--cccCH----HH-H--HH----------
Confidence             024666566888    999999999886 88899999998753   1000  01100    00 0  00          


Q ss_pred             CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHh-cCHHHHHHH
Q 007454          362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDS-LGLTMISRR  440 (603)
Q Consensus       362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~-iGl~~i~~r  440 (603)
                       ....  +..+|+++..++++.                                        .|++++.. .|.+ ..++
T Consensus       388 -~~~~--~~stsp~~~~iaal~----------------------------------------aA~~~l~~~~g~~-~~~~  423 (730)
T 1c4k_A          388 -SFNL--FMSTSPFYPMYAALD----------------------------------------VNAAMQEGEAGRK-LWHD  423 (730)
T ss_dssp             -HHHH--HSCSSCCHHHHHHHH----------------------------------------HHHHHHSHHHHHH-HHHH
T ss_pred             -HHHH--hCCCCCcHHHHHHHH----------------------------------------HHHHHHHhhhhHH-HHHH
Confidence             0011  467899998887775                                        46665544 3433 3467


Q ss_pred             HHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCC------------------------C------C---CC-----C-E
Q 007454          441 GRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIR------------------------F------D---RG-----P-A  480 (603)
Q Consensus       441 ~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~------------------------~------~---rg-----~-i  480 (603)
                      ...++++++++|.+ +.        .+++++|...                        .      .   .+     | .
T Consensus       424 ~~~~a~~lr~~L~~~i~--------g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~k  495 (730)
T 1c4k_A          424 LLITTIEARKKLIKAGS--------MFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNK  495 (730)
T ss_dssp             HHHHHHHHHHHHHHTTC--------SSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTE
T ss_pred             HHHHHHHHHHHHhhhCC--------CeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCCeE
Confidence            88889999999987 43        2677776420                        0      0   11     1 1


Q ss_pred             EEEEEccC---CC----CccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          481 LAFNVFDW---KR----EKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       481 vsFnv~~~---~g----~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                      |.|++++.   +|    .-++...+.+.+.++||.++.                                        .+
T Consensus       496 v~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~----------------------------------------~~  535 (730)
T 1c4k_A          496 FMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK----------------------------------------SD  535 (730)
T ss_dssp             EEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE----------------------------------------EC
T ss_pred             EEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE----------------------------------------CC
Confidence            77888642   11    114556666666666886531                                        11


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          554 ITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       554 ~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .+.||++++..+|.+|+++|+++|.++...
T Consensus       536 ~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~  565 (730)
T 1c4k_A          536 LNSILFLMTPAETPAKMNNLITQLLQLQRL  565 (730)
T ss_dssp             SSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            258999999999999999999999998754

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.67  E-value=1.9e-15  Score=160.48  Aligned_cols=318  Identities=9%  Similarity=-0.031  Sum_probs=199.0

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-  184 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-  184 (603)
                      .+.|+|+.+... +.++.+++++.+.+....           +.    .+..+.           -..+.|+.|+++++ 
T Consensus        23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-----------~~----~y~~~~-----------g~~~l~~~la~~~~~   76 (410)
T 3e2y_A           23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDN-----------MN----QYTRGF-----------GHPALVKALSCLYGK   76 (410)
T ss_dssp             TTSEECSSCCCCSCCCHHHHHHHHHHHTCGG-----------GG----SCCCTT-----------CCHHHHHHHHHHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCcc-----------cc----CCCCCC-----------ChHHHHHHHHHHHHH
Confidence            567999998876 457788888765432100           00    001110           12367778888877 


Q ss_pred             -----CCC-CcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccC----------CccccC
Q 007454          185 -----ISE-NDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSW----------PRLRIN  226 (603)
Q Consensus       185 -----a~~-~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~----------~~g~i~  226 (603)
                           +++ ++++++... +++..                     ....++..|+++..+++++          .+..++
T Consensus        77 ~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d  156 (410)
T 3e2y_A           77 IYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFD  156 (410)
T ss_dssp             HHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECC
T ss_pred             HhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCC
Confidence                 677 688775321 12211                     2334556788888888752          244579


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCC---
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALG----PKDMDSFGLSLV---  295 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~---  295 (603)
                      .++|++.+.      +++++|.+...+|.||.++|.   +.+ ++|+++|+++++|.++..    ++  ...++..+   
T Consensus       157 ~~~l~~~~~------~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~  228 (410)
T 3e2y_A          157 PRELESKFS------SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPGM  228 (410)
T ss_dssp             HHHHHTTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTC
T ss_pred             HHHHHhhcC------CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCCc
Confidence            999988875      268999999999999999754   433 468999999999998764    32  12233222   


Q ss_pred             -CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          296 -RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       296 -~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                       +.++++.|++|.||  +.|  +|+++.++++++.+.....                                   ....
T Consensus       229 ~~~~i~~~S~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~~-----------------------------------~~~~  271 (410)
T 3e2y_A          229 WERTITIGSAGKTFS--VTGWKLGWSIGPAHLIKHLQTVQQ-----------------------------------NSFY  271 (410)
T ss_dssp             GGGEEEEEEHHHHSS--CGGGCCEEEECCHHHHHHHHHHHH-----------------------------------TTTC
T ss_pred             cCeEEEEecchhhcC--CCCceEEEEEECHHHHHHHHHHHH-----------------------------------hhcc
Confidence             34589999999998  446  7888877665433321000                                   0112


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH------HhcCHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV------DSLGLTMISRRGRCLIN  446 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~------~~iGl~~i~~r~~~L~~  446 (603)
                      +.+..+..++.                                        .+++..      ..-.++.+.++.+.+++
T Consensus       272 ~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (410)
T 3e2y_A          272 TCATPLQAALA----------------------------------------EAFWIDIKRMDDPECYFNSLPKELEVKRD  311 (410)
T ss_dssp             CCCHHHHHHHH----------------------------------------HHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHH----------------------------------------HHHHhhhccccchHHHHHHHHHHHHHHHH
Confidence            23333332222                                        233310      01135677888889999


Q ss_pred             HHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC---------HHHHHHHHhcCCcEEeeCcccCc
Q 007454          447 WLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE---------PVLVQKLADRENISLSYGSLHHI  517 (603)
Q Consensus       447 ~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~---------~~~V~~Lad~~gI~lr~G~~C~~  517 (603)
                      +|.+.|.++      |   ++++.|.    .+..+.+.+.+.... +.         .+.+.++++++||.++.|..|..
T Consensus       312 ~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~  377 (410)
T 3e2y_A          312 RMVRLLNSV------G---LKPIVPD----GGYFIIADVSSLGAD-LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCD  377 (410)
T ss_dssp             HHHHHHHTT------T---CEEEBCS----BSSEEEEECGGGCCC-CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSC
T ss_pred             HHHHHHHHC------C---CeecCCC----ccEEEEEEchhhhcc-cccccccccCHHHHHHHHHHHcCEEEeCchhhCC
Confidence            999999875      2   4555553    455666666553211 11         25667788889999999988854


Q ss_pred             cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      ....                             ..+.+.||+|++.  +.|||+++++.|++|
T Consensus       378 ~~~~-----------------------------~~~~~~iRis~~~--~~e~l~~~l~~l~~~  409 (410)
T 3e2y_A          378 SKSK-----------------------------PHFEKLVRFCFIK--KDSTLDAAEEIFRAW  409 (410)
T ss_dssp             TTTH-----------------------------HHHTTEEEEECCC--CHHHHHHHHHHHHTC
T ss_pred             CCCC-----------------------------CCCCCEEEEEEcC--CHHHHHHHHHHHHhc
Confidence            2110                             0123699999987  999999999988764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.67  E-value=3.5e-15  Score=156.72  Aligned_cols=262  Identities=10%  Similarity=0.054  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccC-chHHHH----------------------HHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYES-EAVEAM----------------------IRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~----------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      .+.|++|++++|+++++++++..+ +++..+                      ...++..|+++..++.+ .+..++.++
T Consensus        61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~  139 (356)
T 1fg7_A           61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL-DNWQLDLQG  139 (356)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC-TTSCCCHHH
T ss_pred             HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC-CCCCCCHHH
Confidence            479999999999998899876432 122222                      23334457777777765 345688888


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH----HHHhCCcEEEEeccccCCC-CCCCCCC-CCCCCcEEEEc
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR----IAQENDWHILIDACALGPK-DMDSFGL-SLVRPDFLICS  303 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq~~~~-~m~~ldl-s~~~~Dflv~S  303 (603)
                      |++.+.       +++++.++..+|.||.++|.+.+.    .|+ +|+++++|.++.... ....+++ ...+.++++.|
T Consensus       140 l~~~i~-------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s  211 (356)
T 1fg7_A          140 ISDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  211 (356)
T ss_dssp             HHTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             HHHHhc-------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEec
Confidence            877663       488999999999999999987553    345 899999999876422 0011232 34567899999


Q ss_pred             ccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhh
Q 007454          304 FYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMS  381 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~g  381 (603)
                      ++|+||  +.|  +|++++++++++.+....            .                    .  +   +.|..+..+
T Consensus       212 ~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~------------~--------------------~--~---~~~~~~~~a  252 (356)
T 1fg7_A          212 LSKAFA--LAGLRCGFTLANEEVINLLMKVI------------A--------------------P--Y---PLSTPVADI  252 (356)
T ss_dssp             SSSTTC--CGGGCCEEEEECHHHHHHHHHHS------------C--------------------S--S---CSCHHHHHH
T ss_pred             chHhhc--CchhhhEEEEeCHHHHHHHHHhc------------C--------------------C--C---CCCHHHHHH
Confidence            999999  558  699999776544332100            0                    0  1   223332222


Q ss_pred             hhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          382 IEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       382 l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      ..                                        ++++....-.++...++.+.++++|.+.|.++.     
T Consensus       253 ~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----  287 (356)
T 1fg7_A          253 AA----------------------------------------QALSPQGIVAMRERVAQIIAEREYLIAALKEIP-----  287 (356)
T ss_dssp             HH----------------------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHST-----
T ss_pred             HH----------------------------------------HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence            11                                        222211000156677788889999999998762     


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee-CcccCccCCchhhhhhHHHHHhhhccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY-GSLHHIWFSDKYQKEKDNVLEKTDREAKS  540 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~-G~~C~~~~~~~~~~~~~~~l~~~~~~~~~  540 (603)
                      +   +..+.|.    .+..+.+.++  +     ...+.+.+.++||.++. |..|.                        
T Consensus       288 ~---~~~~~~~----~~~~~~~~~~--~-----~~~l~~~L~~~gI~v~~~g~~~~------------------------  329 (356)
T 1fg7_A          288 C---VEQVFDS----ETNYILARFK--A-----SSAVFKSLWDQGIILRDQNKQPS------------------------  329 (356)
T ss_dssp             T---EEEECCC----SSSEEEEEET--T-----HHHHHHHHHHTTEECEECTTSTT------------------------
T ss_pred             C---ceEECCC----CCeEEEEECC--C-----HHHHHHHHHHCCEEEEECCCCCC------------------------
Confidence            1   3334442    4678888875  2     23344444788999997 75541                        


Q ss_pred             ccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          541 KSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       541 ~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                 . .+.+|+|++   +.+|++++++.|+++
T Consensus       330 -----------~-~~~iRis~~---~~~e~~~~~~~l~~~  354 (356)
T 1fg7_A          330 -----------L-SGCLRITVG---TREESQRVIDALRAE  354 (356)
T ss_dssp             -----------C-TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred             -----------C-CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence                       1 148999998   689999999998765

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.66  E-value=2.7e-15  Score=158.90  Aligned_cols=273  Identities=10%  Similarity=0.060  Sum_probs=172.0

Q ss_pred             HHHHHHHHHc----C--CCCCcEEEeccC-ch----------------------HHHHHHHHHHcCCEEEEEeccCCccc
Q 007454          174 AMKKRIMDFL----N--ISENDYVYDYES-EA----------------------VEAMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~e~vf~~es-~s----------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      +.|+.|++++    |  +++++++++... ++                      .......++..|+++..+++++.+..
T Consensus        80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~  159 (398)
T 3ele_A           80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQ  159 (398)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSS
T ss_pred             HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCc
Confidence            5666666665    4  677888775431 11                      12233445667888888888755568


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHh------CCcEEEEeccccC----CCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQE------NDWHILIDACALG----PKDMDSF  290 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e------~g~~vlvDAaq~~----~~~m~~l  290 (603)
                      ++.++|++.+..      +++++.++..+|.||.++|.+.+    ++|++      +|+++++|.++..    ++. .+.
T Consensus       160 ~d~~~l~~~l~~------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~-~~~  232 (398)
T 3ele_A          160 IDFDALEERINA------HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK-VPF  232 (398)
T ss_dssp             CCHHHHHHTCCT------TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC-CCC
T ss_pred             CCHHHHHHHhCc------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC-cCC
Confidence            899999998853      68999999999999999996533    46777      8999999998764    321 234


Q ss_pred             CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          291 GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       291 dls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      .....+.++++.|++|+||.+..++|+++++++......  .....       .. +                 .   ..
T Consensus       233 ~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~--~~~~~-------~~-~-----------------~---~~  282 (398)
T 3ele_A          233 VTKYYDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAE--LYAAV-------CG-A-----------------G---RA  282 (398)
T ss_dssp             GGGTCSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHH--HHHHH-------HH-H-----------------H---HH
T ss_pred             hHhhcCCeEEEEehhhcCCCccceeEEEEEcchhhhHHH--HHHHH-------HH-H-----------------h---hh
Confidence            345566789999999999832334899998887643110  00000       00 0                 0   01


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .++.+.+.+...+                                         +...++...   ..++.+..+++|.+
T Consensus       283 ~~~~~~~~~~~~a-----------------------------------------~~~~l~~~~---~~~~~~~~~~~l~~  318 (398)
T 3ele_A          283 LGYVCAPSLFQKM-----------------------------------------IVKCQGATG---DINAYKENRDLLYE  318 (398)
T ss_dssp             TTCCCSCHHHHHH-----------------------------------------HTTCTTCCC---CHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHH-----------------------------------------HHHHhcCHH---HHHHHHHHHHHHHH
Confidence            1222221111111                                         111111111   23456677788888


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                      .|.++      |   ++++.|.    .+..+.+.+++.     +...+.+.+.++||.++.|..|..             
T Consensus       319 ~L~~~------g---~~~~~~~----~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~-------------  367 (398)
T 3ele_A          319 GLTRI------G---YHCFKPD----GAFYMFVKALED-----DSNAFCEKAKEEDVLIVAADGFGC-------------  367 (398)
T ss_dssp             HHHHH------T---CCEECCS----BSSEEEEECSSS-----CHHHHHHHHHTTTEECEESGGGTC-------------
T ss_pred             HHHHc------C---CeecCCC----eeEEEEEEcCCC-----CHHHHHHHHHHCCEEEeCccccCC-------------
Confidence            88775      2   3455542    234477776643     234455566788999998866521             


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             .+.||+|++  ++.|||+++++.|++++++
T Consensus       368 -----------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~  395 (398)
T 3ele_A          368 -----------------------PGWVRISYC--VDREMIKHSMPAFEKIYKK  395 (398)
T ss_dssp             -----------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence                                   158999998  7999999999999998764

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.66  E-value=3.4e-15  Score=160.45  Aligned_cols=286  Identities=14%  Similarity=0.076  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHc----C---CCCCcEEEeccC----------------------chHHHHHHHHHHcCCEEEEEeccCCcc
Q 007454          173 SAMKKRIMDFL----N---ISENDYVYDYES----------------------EAVEAMIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l----n---a~~~e~vf~~es----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      .+.|+.|++++    |   +++++++++...                      .+.......++..|+++..+++++ ++
T Consensus        88 ~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~  166 (425)
T 1vp4_A           88 PVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-DG  166 (425)
T ss_dssp             HHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE
T ss_pred             HHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-CC
Confidence            46888888888    8   667888775321                      112223344566788888888874 44


Q ss_pred             ccCHHHHHHHHhhcCC--CCCCeeEE-EEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCCC--CCCCCCC-
Q 007454          224 RINSEKLRKMVVSKGK--KKKQRGLF-VFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPKD--MDSFGLS-  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~--~~~~t~Lv-~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~~--m~~ldls-  293 (603)
                       ++.++|++.|...+.  ...++++| +++..+|.||.++|.+.    +++|+++|+++++|.++....-  -...++. 
T Consensus       167 -~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~  245 (425)
T 1vp4_A          167 -MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFK  245 (425)
T ss_dssp             -ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHH
T ss_pred             -CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHH
Confidence             899999999874100  00157887 68999999999999752    3468999999999999865210  0122332 


Q ss_pred             --CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454          294 --LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       294 --~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                        ..+.++++.|++|+|| +  |  +|++++++++++.+....            .                       .
T Consensus       246 ~~~~~~~i~~~s~sK~~~-~--G~r~G~~~~~~~~~~~l~~~~------------~-----------------------~  287 (425)
T 1vp4_A          246 IGGPERVVLLNTFSKVLA-P--GLRIGMVAGSKEFIRKIVQAK------------Q-----------------------S  287 (425)
T ss_dssp             HHCTTTEEEEEESTTTTC-G--GGCEEEEECCHHHHHHHHHHH------------H-----------------------H
T ss_pred             hCCCCCEEEEeccccccc-c--ccceEEEeeCHHHHHHHHHHh------------h-----------------------h
Confidence              2356799999999999 4  6  699998866544332100            0                       0


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHH-HhcCHHHHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQV-DSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~-~~iGl~~i~~r~~~L~~~L  448 (603)
                      ...+.|..+..++.                                        ++++.. ..-.++.+.++.+..+++|
T Consensus       288 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l  327 (425)
T 1vp4_A          288 ADLCSPAITHRLAA----------------------------------------RYLERYDLLEQLKPTIELYRRKRTVM  327 (425)
T ss_dssp             HHSSCCHHHHHHHH----------------------------------------HHHHHSCHHHHTHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHH----------------------------------------HHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            01122333332221                                        244321 0012566777788888999


Q ss_pred             HHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEcc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhh
Q 007454          449 VNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEK  527 (603)
Q Consensus       449 ~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~  527 (603)
                      .+.|.++. +   +.|.++++.|.    .+..+.+.+++ .++.    .+.++|.++ ||.++.|..|...         
T Consensus       328 ~~~L~~~~-~---~~~g~~~~~~~----~g~~~~~~~~~~~~~~----~l~~~l~~~-gi~v~~g~~f~~~---------  385 (425)
T 1vp4_A          328 LNALEEYF-S---DIPGVKWVKSE----GGLFIWLTLPEGFDTW----EMFEYAKRK-KVFYVPGRVFKVY---------  385 (425)
T ss_dssp             HHHHHHHS-T---TSTTCEECCCS----BSSEEEEECCTTCCTT----TTHHHHHHH-TEECEEGGGGCTT---------
T ss_pred             HHHHHHhC-C---CCCceEEecCC----ccEEEEEEcCCCCCHH----HHHHHHHHC-CCEEECchhhcCC---------
Confidence            99998641 1   11125666552    46688888863 3332    235566655 9999988665421         


Q ss_pred             HHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          528 DNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       528 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                             ....+.+|+|++.. |.+||+++++.|++++.+-
T Consensus       386 -----------------------~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~  418 (425)
T 1vp4_A          386 -----------------------DEPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY  418 (425)
T ss_dssp             -----------------------CCCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence                                   01236899999986 9999999999999988654

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.65  E-value=1.4e-15  Score=162.00  Aligned_cols=320  Identities=15%  Similarity=0.063  Sum_probs=190.4

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH--c
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF--L  183 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~--l  183 (603)
                      .+.++|+.+..+ +.++.+++++.+.+...                    .++.....|+.  .....+.|++|+++  .
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~--~~g~~~lr~~la~~l~~   90 (400)
T 3asa_A           33 HTVINLSIGDTTQPLNASVAEAFASSIARL--------------------SSPTTCRGYGP--DFGLPALRQKLSEDFYR   90 (400)
T ss_dssp             SCCEECSSCCCCCCCCHHHHHHHHHHHHHH--------------------TSSSCCCCCCC--TTCCHHHHHHHHHTTST
T ss_pred             CceEeccCCCCCCCCCHHHHHHHHHHHhcc--------------------cccccccCCCC--CCCCHHHHHHHHHHHHc
Confidence            457899888775 46777888776533210                    00000111111  01134789999999  4


Q ss_pred             C-CCCCcEEEeccC-chHHHH--------------------HHHHHHcCCE-EEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          184 N-ISENDYVYDYES-EAVEAM--------------------IRTSEKRGAR-VMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       184 n-a~~~e~vf~~es-~sV~~~--------------------~~~a~~~Ga~-V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      | +++++++++... +++..+                    ...++..|++ +..++++. .+.+.. ++++        
T Consensus        91 g~~~~~~v~~~~G~~~al~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~l~~--------  160 (400)
T 3asa_A           91 GFVDAKEIFISDGAKVDLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQ-ENAFFP-EFPE--------  160 (400)
T ss_dssp             TSSCGGGEEEESCHHHHHHHHHHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCG-GGTTCC-CCCT--------
T ss_pred             CCCCHHHEEEccChHHHHHHHHHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccch-hcCccc-Chhh--------
Confidence            7 778888876432 122222                    2233445666 66666542 111111 1111        


Q ss_pred             CCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc-CCCC-CCCCCCCCCC----CcEEEEcccccCCC
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL-GPKD-MDSFGLSLVR----PDFLICSFYQIFGE  310 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~-~~~~-m~~ldls~~~----~Dflv~S~hK~fG~  310 (603)
                      .+++++|.+...+|.||.++|.+.    +++|+++|+++++|.++. ...+ ..+.++..+.    .++++.|++|+|| 
T Consensus       161 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-  239 (400)
T 3asa_A          161 DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG-  239 (400)
T ss_dssp             TCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-
T ss_pred             ccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-
Confidence            135788988899999999999753    246899999999999876 3210 0233443332    3589999999999 


Q ss_pred             CCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcC
Q 007454          311 NPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSG  388 (603)
Q Consensus       311 ~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~  388 (603)
                       +.|  +|+++++++....+.     ..+.      ..+                ........++.|..+..++.     
T Consensus       240 -~~GlriG~~~~~~~~~~~~~-----~~~~------~~~----------------~~~~~~~~~~~~~~~~~a~~-----  286 (400)
T 3asa_A          240 -FAGIRLGWTVIPQELTYADG-----HFVI------QDW----------------ERFLSTTFNGASIPAQEAGV-----  286 (400)
T ss_dssp             -TTTCCCEEEECCTTCBCTTS-----CBHH------HHH----------------HHHHHHHCCCCCHHHHHHHH-----
T ss_pred             -CcchheeEEeeChhhccchh-----hhHH------HHH----------------HHHhccCccCCChHHHHHHH-----
Confidence             457  799999887643221     0000      000                00000112345555443322     


Q ss_pred             ccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q 007454          389 KLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKI  468 (603)
Q Consensus       389 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~I  468 (603)
                                                         .+++   ...++.+.++.+.+.++|.+.|.++      |   +++
T Consensus       287 -----------------------------------~~l~---~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~  319 (400)
T 3asa_A          287 -----------------------------------AGLS---ILPQLEAIHYYRENSDLLRKALLAT------G---FEV  319 (400)
T ss_dssp             -----------------------------------HHHH---HTTTCHHHHHHHHHHHHHHHHHHHT------T---CEE
T ss_pred             -----------------------------------HHhC---cHHHHHHHHHHHHHHHHHHHHHHHC------C---Cee
Confidence                                               2343   2247788888999999999999875      2   456


Q ss_pred             eCCCCCCCCCCEEEEE-Ecc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454          469 YGPKIRFDRGPALAFN-VFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR  546 (603)
Q Consensus       469 ygp~~~~~rg~ivsFn-v~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  546 (603)
                      ++|.    .+..+.+. +++ .+..    +++.+|++++||.++.|..|...                            
T Consensus       320 ~~~~----~~~~~~~~~~~~~~~~~----~~~~~l~~~~gv~v~~g~~f~~~----------------------------  363 (400)
T 3asa_A          320 FGGE----HAPYLWVKPTQANISDR----DLFDFFLREYHIAITPGIGFGRS----------------------------  363 (400)
T ss_dssp             EECS----SSSEEEEECCCTTCCTT----THHHHHHHHHSEECEEGGGGCGG----------------------------
T ss_pred             eCCC----CceEEEEeccCCCCCHH----HHHHHHHHhCCEEEeChhHhCCC----------------------------
Confidence            6542    46778888 653 2222    34667777789999988776321                            


Q ss_pred             ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                            +.+.||+|  ++++.+|++++++.|+++++.
T Consensus       364 ------~~~~iRis--~~~~~e~i~~~l~~l~~~~~~  392 (400)
T 3asa_A          364 ------GSGFVRFS--SLGKREDILAACERLQMAPAL  392 (400)
T ss_dssp             ------GTTCEEEE--CCSCHHHHHHHHHHHHC----
T ss_pred             ------CCCEEEEE--eeCCHHHHHHHHHHHHHHHHh
Confidence                  12589999  478999999999999888753

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.65  E-value=4.2e-15  Score=161.39  Aligned_cols=328  Identities=11%  Similarity=0.044  Sum_probs=196.4

Q ss_pred             cCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH-HHHHHHHHHcCCCCCcEEE
Q 007454          114 YFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES-AMKKRIMDFLNISENDYVY  192 (603)
Q Consensus       114 yaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~-~aR~~Ia~~lna~~~e~vf  192 (603)
                      .++..++++.+++++.+.+...                 |..+++.+.+..|....+.++ .+|+++++++|++...+++
T Consensus        51 ~~~~~~~~~~v~~a~~~~~~~~-----------------~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~~v~~  113 (447)
T 3h7f_A           51 IASENFVPRAVLQAQGSVLTNK-----------------YAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQP  113 (447)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGGC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC
T ss_pred             ecCCCCCCHHHHHHHHHHhcCC-----------------ccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCceEEEe
Confidence            3455677999999987654210                 123566665554554444444 4559999999997643323


Q ss_pred             eccCchHHHHHHHHHHcCCEEE--------------------------EEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454          193 DYESEAVEAMIRTSEKRGARVM--------------------------SAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL  246 (603)
Q Consensus       193 ~~es~sV~~~~~~a~~~Ga~V~--------------------------~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L  246 (603)
                      ..-++++..++..+.+.|.+|.                          ..+++..++.++.++|++.+...     ++++
T Consensus       114 ~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~  188 (447)
T 3h7f_A          114 HSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEF-----RPKV  188 (447)
T ss_dssp             SSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHH-----CCSE
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHhc-----CCeE
Confidence            3323344433443333444443                          33333234568999999998642     4678


Q ss_pred             EEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          247 FVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       247 v~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +.+...+|.++.  |++.+ ++|+++|+++++|.+|..+.   . ...+.- .++|++++|+||+||+ |.| |+++.++
T Consensus       189 i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g-~~~~~~-~~~di~~~s~sK~l~G-~~g-G~i~~~~  262 (447)
T 3h7f_A          189 IIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAG-LHPSPV-PHADVVSTTVHKTLGG-GRS-GLIVGKQ  262 (447)
T ss_dssp             EEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTT-SSCCST-TTCSEEEEESSGGGCC-CSC-EEEEECG
T ss_pred             EEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCC-CCCCCC-CCCcEEEecCCcCCCC-CCe-EEEEECH
Confidence            887666665554  99866 58999999999999975531   0 011111 2579999999999887 877 9998887


Q ss_pred             CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhh
Q 007454          323 STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAE  402 (603)
Q Consensus       323 ~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~  402 (603)
                      ++.+.+.+...+                                  ...|+++...+++++                   
T Consensus       263 ~~~~~l~~~~~~----------------------------------~~~~~~~~~~~~a~~-------------------  289 (447)
T 3h7f_A          263 QYAKAINSAVFP----------------------------------GQQGGPLMHVIAGKA-------------------  289 (447)
T ss_dssp             GGHHHHHHHHTT----------------------------------TTCSSCCHHHHHHHH-------------------
T ss_pred             HHHHHHhhhcCC----------------------------------cccCCccHHHHHHHH-------------------
Confidence            654433321100                                  123455555555543                   


Q ss_pred             hhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEE
Q 007454          403 ADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALA  482 (603)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivs  482 (603)
                                           .++..+...+++...++++...++|.+.|.++..    ..+.+.++.+.   .....+.
T Consensus       290 ---------------------~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~~~g~~~~~~~---~~~~~~~  341 (447)
T 3h7f_A          290 ---------------------VALKIAATPEFADRQRRTLSGARIIADRLMAPDV----AKAGVSVVSGG---TDVHLVL  341 (447)
T ss_dssp             ---------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHH----HHTTCEEGGGS---CSSSEEE
T ss_pred             ---------------------HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCeEEecCC---CCCCEEE
Confidence                                 3444332224567777888888888888876400    00013444321   2345666


Q ss_pred             EEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          483 FNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       483 Fnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                      +.+.+.   -+....+.+++++.||.++....   ... ..                          .....+.+|+++.
T Consensus       342 ~~~~~~---~~~~~~~~~~l~~~GI~v~~~~i---~~~-~~--------------------------~p~~~~~lRig~~  388 (447)
T 3h7f_A          342 VDLRDS---PLDGQAAEDLLHEVGITVNRNAV---PND-PR--------------------------PPMVTSGLRIGTP  388 (447)
T ss_dssp             EECTTS---SCCHHHHHHHHHHTTEECBC-------------------------------------------CEEEEECH
T ss_pred             EEcCCC---CCCHHHHHHHHHHCCeEEecccC---CCC-CC--------------------------CCCCCCceeccCH
Confidence            666432   24556788888889999873210   000 00                          0111257999988


Q ss_pred             CC----CCHHHHHHHHHHHHHHHhh
Q 007454          563 YL----ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       563 ~~----tt~eDVd~l~~~l~~~l~~  583 (603)
                      ..    .+.+||+++++.|.+.|+.
T Consensus       389 ~~~~~~~~~eei~~~~~~l~~~l~~  413 (447)
T 3h7f_A          389 ALATRGFGDTEFTEVADIIATALAT  413 (447)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred             HHhhCCCCHHHHHHHHHHHHHHHhc
Confidence            77    4689999999999998865

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.65  E-value=6.5e-16  Score=164.94  Aligned_cols=250  Identities=10%  Similarity=0.074  Sum_probs=165.7

Q ss_pred             HHHHHcCCEEEEEeccC-----------CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHH
Q 007454          204 RTSEKRGARVMSAEFSW-----------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIA  268 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~-----------~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a  268 (603)
                      ..++..|+++..+++++           .+..++.++|++.+..      ++++++++..+|.||.++|   ++.+ ++|
T Consensus       130 ~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~  203 (422)
T 3fvs_A          130 PMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTS------RTKALVLNTPNNPLGKVFSREELELVASLC  203 (422)
T ss_dssp             HHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcCC------CceEEEECCCCCCCCcCCCHHHHHHHHHHH
Confidence            44566789999998874           1335899999888753      6899999999999999996   5534 478


Q ss_pred             HhCCcEEEEeccccC----CCCCCCCCCCCC----CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCcee
Q 007454          269 QENDWHILIDACALG----PKDMDSFGLSLV----RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVS  338 (603)
Q Consensus       269 ~e~g~~vlvDAaq~~----~~~m~~ldls~~----~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~  338 (603)
                      +++|+++++|.++..    ++  ...++..+    +.++++.|++|.||  +.|  +|++++++++++.+....      
T Consensus       204 ~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~------  273 (422)
T 3fvs_A          204 QQHDVVCITDEVYQWMVYDGH--QHISIASLPGMWERTLTIGSAGKTFS--ATGWKVGWVLGPDHIMKHLRTVH------  273 (422)
T ss_dssp             HHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEEEEEHHHHHT--CGGGCCEEEECCHHHHHHHHHHH------
T ss_pred             HHcCcEEEEEccchhhccCCC--CCCChhhcccccCcEEEEecchhccC--CccceEEEEEeCHHHHHHHHHHH------
Confidence            999999999998764    33  22333322    45599999999998  446  788887765543332100      


Q ss_pred             ccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCC
Q 007454          339 LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGG  418 (603)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  418 (603)
                                                .   ....+.|..+..++.                                   
T Consensus       274 --------------------------~---~~~~~~~~~~~~a~~-----------------------------------  289 (422)
T 3fvs_A          274 --------------------------Q---NSVFHCPTQSQAAVA-----------------------------------  289 (422)
T ss_dssp             --------------------------H---TTTCCCCHHHHHHHH-----------------------------------
T ss_pred             --------------------------h---hccCCCCcHHHHHHH-----------------------------------
Confidence                                      0   012233333333322                                   


Q ss_pred             chhHHHHHHHH------HhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC---
Q 007454          419 SEIECRGLDQV------DSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK---  489 (603)
Q Consensus       419 ~~~~~~ald~~------~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~---  489 (603)
                           ++++..      ..-.++.+.++.+.++++|.+.|.++      |   ++++.|.    .+..+.+.+....   
T Consensus       290 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~~----~~~~~~~~~~~~~~~~  351 (422)
T 3fvs_A          290 -----ESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV------G---LKPIIPQ----GSYFLITDISDFKRKM  351 (422)
T ss_dssp             -----HHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT------T---CEEEBCS----BSSEEEEECHHHHHHC
T ss_pred             -----HHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHc------C---CeecCCC----eeeEEEEechhhcccc
Confidence                 234321      01136778888999999999999875      2   4555553    3556666664311   


Q ss_pred             -------CCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC
Q 007454          490 -------REKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG  562 (603)
Q Consensus       490 -------g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg  562 (603)
                             .+....+.+.++++++||.++.|..|.....                             ...+.+.||+|++
T Consensus       352 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~-----------------------------~~~~~~~iRis~~  402 (422)
T 3fvs_A          352 PDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPH-----------------------------QKHFDHYIRFCFV  402 (422)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHH-----------------------------HTTSCSEEEEECC
T ss_pred             cccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcC-----------------------------CCCCCCeEEEEec
Confidence                   0000225567778888999999988864210                             0123479999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 007454          563 YLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       563 ~~tt~eDVd~l~~~l~~~l~  582 (603)
                      .  |.+||+++++.|++++.
T Consensus       403 ~--~~e~i~~~l~~l~~~l~  420 (422)
T 3fvs_A          403 K--DEATLQAMDEKLRKWKV  420 (422)
T ss_dssp             C--CHHHHHHHHHHHHHHHH
T ss_pred             C--CHHHHHHHHHHHHHHHh
Confidence            8  99999999999998874

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.65  E-value=3e-14  Score=148.33  Aligned_cols=262  Identities=9%  Similarity=-0.011  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHH-------------------HHHHHHHHcCCEEEEEec-cCCccccCHHHHH
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVE-------------------AMIRTSEKRGARVMSAEF-SWPRLRINSEKLR  231 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~-------------------~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~  231 (603)
                      .+.|++|++++|+++++++++.... ++.                   .....++..|+++..+++ +. ...++.    
T Consensus        53 ~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~----  127 (350)
T 3fkd_A           53 GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFRGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF----  127 (350)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC----
T ss_pred             HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHCCCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc----
Confidence            3789999999999999998864321 222                   223445556777777776 42 222221    


Q ss_pred             HHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCC-cEEEEeccccCCCC---CCCCCCCCCCCcEEEEcccc
Q 007454          232 KMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQEND-WHILIDACALGPKD---MDSFGLSLVRPDFLICSFYQ  306 (603)
Q Consensus       232 ~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g-~~vlvDAaq~~~~~---m~~ldls~~~~Dflv~S~hK  306 (603)
                                ++++++.++..+|.||.++|++.+ ++++..+ .++++|.++.....   .....+...+.++++.|++|
T Consensus       128 ----------~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK  197 (350)
T 3fkd_A          128 ----------SNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSH  197 (350)
T ss_dssp             ----------TTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHH
T ss_pred             ----------CCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCch
Confidence                      268899999999999999999865 4666654 69999998653210   01122334566799999999


Q ss_pred             cCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhh
Q 007454          307 IFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQ  386 (603)
Q Consensus       307 ~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~  386 (603)
                      +||.+..++|++++++++.+.+....                                     ...++|..+..+     
T Consensus       198 ~~~~~G~r~G~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~-----  235 (350)
T 3fkd_A          198 AYGIPGLRIGYIVANKDFMKRVAAFS-------------------------------------TPWAVNALAIEA-----  235 (350)
T ss_dssp             HHSCGGGCCEEEECCHHHHHHHHTTC-------------------------------------CTTCSCHHHHHH-----
T ss_pred             hccCcchheEeEEeCHHHHHHHHHhC-------------------------------------CCCCCCHHHHHH-----
Confidence            99832223788887655543332110                                     112233333222     


Q ss_pred             cCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 007454          387 SGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLG--LTMISRRGRCLINWLVNALMKLQHPNTEGNA  464 (603)
Q Consensus       387 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iG--l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~p  464 (603)
                                                            +...++..+  ++.+.++. .++++|.+.|.+++        
T Consensus       236 --------------------------------------~~~~l~~~~~~~~~~~~~~-~~~~~l~~~L~~~~--------  268 (350)
T 3fkd_A          236 --------------------------------------AKFILIHPAQFTLPIRKWQ-RNTVDFITALNRLD--------  268 (350)
T ss_dssp             --------------------------------------HHHHHHCTTTTCCCHHHHH-HHHHHHHHHHHHST--------
T ss_pred             --------------------------------------HHHHHhCHHHHHHHHHHHH-HHHHHHHHHHhcCC--------
Confidence                                                  222222222  23344443 77888888898752        


Q ss_pred             eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccc
Q 007454          465 LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDN  544 (603)
Q Consensus       465 lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  544 (603)
                      .++++.+     .+..+.+.+++.+    ..+++++|.+++||.++.|..|..                           
T Consensus       269 ~~~~~~~-----~~~~~~~~~~~~~----~~~l~~~L~~~~gi~v~~g~~f~~---------------------------  312 (350)
T 3fkd_A          269 GVEVHPS-----GTTFFLLRLKKGT----AAELKKYMLEEYNMLIRDASNFRG---------------------------  312 (350)
T ss_dssp             TEEECCC-----SSSEEEEEESSSC----HHHHHHHHHHTTCEECEECTTSTT---------------------------
T ss_pred             CcEECCC-----CCcEEEEECCCCC----HHHHHHHHHHHCCEEEEeCccCCC---------------------------
Confidence            2666533     4677778887542    123455566559999999977731                           


Q ss_pred             ccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          545 NRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       545 ~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                             ...+.||+|++   +.+|+++|+++|++++.+.
T Consensus       313 -------~~~~~iRis~~---~~~~~~~l~~al~~~~~~~  342 (350)
T 3fkd_A          313 -------LDESYVRITTQ---RPAQNQLFIKALETFLEKY  342 (350)
T ss_dssp             -------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred             -------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence                   12369999987   8999999999999987653

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.65  E-value=1.1e-15  Score=163.39  Aligned_cols=274  Identities=15%  Similarity=0.071  Sum_probs=178.1

Q ss_pred             HHHHHHHHHHc----CCC--C-CcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCCcc
Q 007454          173 SAMKKRIMDFL----NIS--E-NDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l----na~--~-~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      .+.|++|++++    |++  + ++++++... +++..                     ....++..|+++..++.++.+.
T Consensus        88 ~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~  167 (404)
T 2o1b_A           88 EAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHY  167 (404)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCTTTC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCcccC
Confidence            46888888888    864  3 678775432 12222                     2233456788888888764233


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEEEeccccCCCC-CCCCCCCCC---
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGPKD-MDSFGLSLV---  295 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~~~~-m~~ldls~~---  295 (603)
                      .++.++|++.|..      ++++|.++..+|.||.++|.+    ++++|+++|+++++|.++....- -.+.++..+   
T Consensus       168 ~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  241 (404)
T 2o1b_A          168 LPDWSKVDSQIID------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENG  241 (404)
T ss_dssp             CCCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTH
T ss_pred             cCCHHHHHHhhcc------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCC
Confidence            4788899888863      588999988899999999854    23478999999999998865320 012232222   


Q ss_pred             -CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccC
Q 007454          296 -RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       296 -~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                       +.|+++.|++|+||  +.|  +|+++.++++++.+....                                .   ...+
T Consensus       242 ~~~~i~~~s~sK~~g--~~G~r~G~~~~~~~~~~~l~~~~--------------------------------~---~~~~  284 (404)
T 2o1b_A          242 KDVAIEIYSLSKGYN--MSGFRVGFAVGNKDMIQALKKYQ--------------------------------T---HTNA  284 (404)
T ss_dssp             HHHEEEEEESTTTTT--CGGGCCEEEEECHHHHHHHHHHH--------------------------------H---HHCC
T ss_pred             CCCEEEEEecchhcc--CchhheEeEecCHHHHHHHHHHH--------------------------------h---hccC
Confidence             46799999999998  447  699988776544333100                                0   0122


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      +.|.....++.                                        ++++... -.++++.++.+.+.++|.+.|
T Consensus       285 ~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~~L  323 (404)
T 2o1b_A          285 GMFGALQDAAI----------------------------------------YALNHYD-DFLEEQSNVFKTRRDRFEAML  323 (404)
T ss_dssp             CCCHHHHHHHH----------------------------------------HHHHHCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH----------------------------------------HHHhcCH-HHHHHHHHHHHHHHHHHHHHH
Confidence            33444333322                                        3443311 136677788888999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCH-HHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEP-VLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~-~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      .++      |   ++++.|.    .+-.+.+.+++  +  ++. +++++|++++||.++.|..|...             
T Consensus       324 ~~~------g---~~~~~~~----~g~~~~~~~~~--~--~~~~~l~~~l~~~~gi~v~~g~~f~~~-------------  373 (404)
T 2o1b_A          324 AKA------D---LPFVHAK----GGIYVWLETPP--G--YDSEQFEQFLVQEKSILVAPGKPFGEN-------------  373 (404)
T ss_dssp             HHT------T---CCEECCC----BSSEEEEECCT--T--CCHHHHHHHHHHHHCEECEESGGGCGG-------------
T ss_pred             Hhc------C---CeecCCC----cceEEEEeCCC--C--CCHHHHHHHHHHHCCEEEeCchhhCcC-------------
Confidence            875      2   3445442    23346677753  1  222 34566677789999998766320             


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                           ..+.||+|++.  +.+|++++++.|++++++
T Consensus       374 ---------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~  402 (404)
T 2o1b_A          374 ---------------------GNRYVRISLAL--DDQKLDEAAIRLTELAYL  402 (404)
T ss_dssp             ---------------------GTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred             ---------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence                                 12589999996  788999999999888753

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.64  E-value=1.6e-15  Score=157.42  Aligned_cols=184  Identities=9%  Similarity=0.026  Sum_probs=116.0

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      ..||||++..+++++.+++++.+....                          ...|+.  .....+.|++|++++|++ 
T Consensus         4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~--------------------------~~~y~~--~~~~~~l~~~la~~~g~~-   54 (347)
T 1jg8_A            4 MMIDLRSDTVTKPTEEMRKAMAQAEVG--------------------------DDVYGE--DPTINELERLAAETFGKE-   54 (347)
T ss_dssp             -CEECSCGGGCCCCHHHHHHHHTCCCC--------------------------CGGGTC--CHHHHHHHHHHHHHHTCS-
T ss_pred             eEEEeccccCCCCCHHHHHHHhcCCCC--------------------------CcccCC--ChHHHHHHHHHHHHhCCc-
Confidence            468999999999888888887643110                          001111  123457889999999974 


Q ss_pred             CcEEEecc-C---------------------chHHHH---HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          188 NDYVYDYE-S---------------------EAVEAM---IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       188 ~e~vf~~e-s---------------------~sV~~~---~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                       +.++... +                     ......   ...++..|+++..+ .+ +++.++.++|++.|.......+
T Consensus        55 -~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~  131 (347)
T 1jg8_A           55 -AALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNGAMDPDDVRKAIRPRNIHFP  131 (347)
T ss_dssp             -EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETTEECHHHHHHHSCCSCTTSC
T ss_pred             -eEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCCccCHHHHHHHhcccccccc
Confidence             3333211 1                     111111   11345578888887 44 3567899999999863100012


Q ss_pred             CeeEEEEeCccccc-cccccHHH----HHHHHhCCcEEEEeccccCCC-CCCCCCCCC--CCCcEEEEcccccCCCCCCc
Q 007454          243 QRGLFVFPLHSRMT-GARYPYLW----MRIAQENDWHILIDACALGPK-DMDSFGLSL--VRPDFLICSFYQIFGENPSG  314 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~T-G~~~pl~~----i~~a~e~g~~vlvDAaq~~~~-~m~~ldls~--~~~Dflv~S~hK~fG~~P~G  314 (603)
                      +|++|.++..+|.| |.++|.+.    +++|+++|++|++|+++..+. .....++..  .++|.+++|+||++|. |.|
T Consensus       132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~-~~G  210 (347)
T 1jg8_A          132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCA-PVG  210 (347)
T ss_dssp             CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCC-SSC
T ss_pred             CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCC-Cce
Confidence            68999999999999 99999753    346899999999999874310 000122221  3689999999999995 544


Q ss_pred             eEEEEEeCCCC
Q 007454          315 FGCLFVKKSTV  325 (603)
Q Consensus       315 ~G~L~vkk~~~  325 (603)
                       |+++.+++.+
T Consensus       211 -~~~~~~~~~~  220 (347)
T 1jg8_A          211 -SVVVGDRDFI  220 (347)
T ss_dssp             -EEEEECHHHH
T ss_pred             -EEEEcCHHHH
Confidence             2444455443

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.64  E-value=6.3e-14  Score=149.74  Aligned_cols=320  Identities=12%  Similarity=0.100  Sum_probs=190.0

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++.      ++.++.+++++.+.+...                    .+....  ++  ......+.|++|+
T Consensus        39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~~--~~--~~~~~~~l~~~la   94 (426)
T 1sff_A           39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL--------------------SHTCFQ--VL--AYEPYLELCEIMN   94 (426)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC--------------------SCCCTT--TE--ECHHHHHHHHHHH
T ss_pred             CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC--------------------CCcccc--cc--CCHHHHHHHHHHH
Confidence            45678998643      346788999887654311                    111000  11  1245678999999


Q ss_pred             HHcCCC-CCcEEEeccC-chHHHHHH---HHHHcCCE-----------------------------------EEEEeccC
Q 007454          181 DFLNIS-ENDYVYDYES-EAVEAMIR---TSEKRGAR-----------------------------------VMSAEFSW  220 (603)
Q Consensus       181 ~~lna~-~~e~vf~~es-~sV~~~~~---~a~~~Ga~-----------------------------------V~~~~~~~  220 (603)
                      ++++.+ +++++|+... +++..++.   ....+| +                                   |..+++++
T Consensus        95 ~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~  173 (426)
T 1sff_A           95 QKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC  173 (426)
T ss_dssp             HHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCB
T ss_pred             HhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCc
Confidence            999433 3677776543 34444333   222223 3                                   33344321


Q ss_pred             ----CccccCHHHHHHHHhhcCCCCCCeeEEEE-eCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--C
Q 007454          221 ----PRLRINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--M  287 (603)
Q Consensus       221 ----~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m  287 (603)
                          ..+.++.++|++.|.... ..+++++|.+ |..+| ||.+.|    ++.+ ++|+++|+++++|.++. .+..  +
T Consensus       174 ~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~  251 (426)
T 1sff_A          174 PLHGISEDDAIASIHRIFKNDA-APEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTL  251 (426)
T ss_dssp             GGGTBCHHHHHHHHHHHHHHTC-CGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred             cccccchHHHHHHHHHHHHhcc-CCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccch
Confidence                012356788888886310 0125778877 56677 997777    7755 58999999999999877 2221  1


Q ss_pred             CCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454          288 DSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS  365 (603)
Q Consensus       288 ~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~  365 (603)
                      ..++.....+|++  |+.|+||  | |  +|++++++++++.+.+...++                              
T Consensus       252 ~~~~~~~~~~di~--s~sK~~~--~-GlriG~~~~~~~~~~~l~~~~~~~------------------------------  296 (426)
T 1sff_A          252 FAMEQMGVAPDLT--TFAKSIA--G-GFPLAGVTGRAEVMDAVAPGGLGG------------------------------  296 (426)
T ss_dssp             SGGGGTTSCCSEE--EECGGGG--T-SSCCEEEEEEHHHHTTSCTTSBCC------------------------------
T ss_pred             hhhhhcCCCCCEE--EEccccc--C-CCceEEEEEcHHHHhhhccCCcCc------------------------------
Confidence            1233333458977  5569999  7 8  599999987765554210000                              


Q ss_pred             ccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHH
Q 007454          366 KQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLI  445 (603)
Q Consensus       366 ~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~  445 (603)
                           .-+.|..+.+++.                                        ++++++.+   +.+.++++.+.
T Consensus       297 -----~~~~~~~~~~a~~----------------------------------------aal~~~~~---~~~~~~~~~~~  328 (426)
T 1sff_A          297 -----TYAGNPIACVAAL----------------------------------------EVLKVFEQ---ENLLQKANDLG  328 (426)
T ss_dssp             -----SSSSCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHH
T ss_pred             -----CCCCCHHHHHHHH----------------------------------------HHHHHHHh---cCHHHHHHHHH
Confidence                 0012333332222                                        56776654   24567888889


Q ss_pred             HHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC----CCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454          446 NWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK----REKIEPVLVQKLADRENISLSYGSLHHIWFSD  521 (603)
Q Consensus       446 ~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~----g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~  521 (603)
                      +++.++|.++..    ..+.+..+-     ..+.++.+.+.+..    ...+....+.+.+.++||.++.|..       
T Consensus       329 ~~l~~~l~~~~~----~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-------  392 (426)
T 1sff_A          329 QKLKDGLLAIAE----KHPEIGDVR-----GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-------  392 (426)
T ss_dssp             HHHHHHHHHHHH----TCTTEEEEE-----EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------
T ss_pred             HHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-------
Confidence            999999877520    023233221     13788999885411    0011223343334457999876521       


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                     ..+.||+|+++.+|.+|++++++.|+++++.
T Consensus       393 -------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  423 (426)
T 1sff_A          393 -------------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFDE  423 (426)
T ss_dssp             -------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence                                           0258999999999999999999999998753

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.63  E-value=1.6e-15  Score=166.37  Aligned_cols=140  Identities=11%  Similarity=0.139  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-----------------------CchHHH-HHHHHHHcCCEEEEEeccCCcccc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-----------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-----------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      ...+++++++++++|++ +.+++...                       +.+... +...++..|++++.++.+      
T Consensus       133 ~~~~~l~~~la~~~g~~-~~i~~~sGt~al~~~l~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~------  205 (464)
T 1ibj_A          133 PTRDALESLLAKLDKAD-RAFCFTSGMAALSAVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT------  205 (464)
T ss_dssp             HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT------
T ss_pred             HHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC------
Confidence            35678999999999975 33333211                       111111 112234567777777653      


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++|++.|.      +++++|.+...+|.||.++|++.+ ++|+++|++|++|.++..|....+++   +++|+++.|+
T Consensus       206 d~~~l~~~i~------~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~~---~~~div~~S~  276 (464)
T 1ibj_A          206 KLDEVAAAIG------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPLE---LGADIVMHSA  276 (464)
T ss_dssp             SHHHHHHHCC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGG---TTCSEEEEET
T ss_pred             CHHHHHHHhc------cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCCEEEEECC
Confidence            6788988885      369999999999999999999966 58999999999999998776212443   5799999999


Q ss_pred             cccCCCCCCce--EEEEEeC-CCCc
Q 007454          305 YQIFGENPSGF--GCLFVKK-STVP  326 (603)
Q Consensus       305 hK~fG~~P~G~--G~L~vkk-~~~~  326 (603)
                      ||+||+ |.|+  |++++++ .+.+
T Consensus       277 sK~~~g-~~Gl~~G~l~~~~~~l~~  300 (464)
T 1ibj_A          277 TKFIAG-HSDVMAGVLAVKGEKLAK  300 (464)
T ss_dssp             TTTTTC-SSCCCCEEEEECSHHHHH
T ss_pred             cccccC-CCCCcEEEEEEChHHHHH
Confidence            998875 7887  9999986 4433

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.63  E-value=1.3e-14  Score=152.72  Aligned_cols=272  Identities=11%  Similarity=0.065  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHHc----CCC--CC-cEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC
Q 007454          171 LESAMKKRIMDFL----NIS--EN-DYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       171 ~~~~aR~~Ia~~l----na~--~~-e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~  221 (603)
                      ...+.|++|++++    |++  ++ +++++... ++                     .......++..|+++..++++ .
T Consensus        64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~  142 (376)
T 2dou_A           64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLR-E  142 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECBC-T
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCC-C
Confidence            3567888999988    875  45 78775431 12                     222334456678888888873 2


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCC----CCCCCCC-
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPK----DMDSFGL-  292 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~----~m~~ldl-  292 (603)
                      +..++.++|++.|..      +++++.++..+|.||.++|.+.    +++|+++|+++++|.++....    ....+++ 
T Consensus       143 ~~~~d~~~l~~~l~~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~  216 (376)
T 2dou_A          143 DGLADLKAVPEGVWR------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALP  216 (376)
T ss_dssp             TSSBCGGGSCHHHHH------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGST
T ss_pred             CCCCCHHHHHHhhcc------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence            345788899888863      5889999888999999999642    246899999999999876531    0011222 


Q ss_pred             CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          293 SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      ...+.++++.|++|+||  +.|  +|+++.++++++.+....            .                       ..
T Consensus       217 ~~~~~~i~~~s~sK~~~--~~G~r~G~~~~~~~~~~~l~~~~------------~-----------------------~~  259 (376)
T 2dou_A          217 GAKERVVELFSLSKSYN--LAGFRLGFALGSEEALARLERVK------------G-----------------------VI  259 (376)
T ss_dssp             TGGGTEEEEEEHHHHHT--CGGGCCEEEEECHHHHHHHHHHH------------H-----------------------HH
T ss_pred             CCCCcEEEEecchhhcC--ChhheeEEEecCHHHHHHHHHHH------------H-----------------------hc
Confidence            22356899999999998  447  699988776544332100            0                       01


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      ..+.|..+..++.                                        ++++... -.++.+.++.+.++++|.+
T Consensus       260 ~~~~~~~~~~a~~----------------------------------------~~l~~~~-~~~~~~~~~~~~~~~~l~~  298 (376)
T 2dou_A          260 DFNQYAGVLRMGV----------------------------------------EALKTPK-EVVRGYARVYRERALGMAE  298 (376)
T ss_dssp             CCCSCHHHHHHHH----------------------------------------HHHTSCH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHH----------------------------------------HHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence            1223433333222                                        2333211 1356677788888999999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      .|.++          ++++.|.    .+..+.+.+++.    ++.. ++++|.+ +||.++.|..|...           
T Consensus       299 ~L~~~----------~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~l~~-~gi~v~~g~~f~~~-----------  348 (376)
T 2dou_A          299 ALKGV----------LSLLPPR----ATMYLWGRLPEG----VDDLEFGLRLVE-RGVALAPGRGFGPG-----------  348 (376)
T ss_dssp             HHTTT----------SEECCCC----BSSEEEEECCTT----CCHHHHHHHHHH-TTEECEEGGGGCGG-----------
T ss_pred             HHHHh----------cCccCCC----eeEEEEEECCCC----CCHHHHHHHHHH-CCEEEcCchhhCCC-----------
Confidence            98753          3444432    344566777531    2233 4555555 49999988766310           


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                             ..+.||+|++.  +.+||+++++.|+++++
T Consensus       349 -----------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l~  376 (376)
T 2dou_A          349 -----------------------GKGFVRIALVR--PLEELLEAAKRIREALD  376 (376)
T ss_dssp             -----------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC-
T ss_pred             -----------------------CCCeEEEEecC--CHHHHHHHHHHHHHHhC
Confidence                                   12589999986  89999999999988753

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.63  E-value=5.6e-15  Score=158.51  Aligned_cols=283  Identities=15%  Similarity=0.147  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHcC--------CCCCcEEEeccC-chHHHHH---------------------H-HHHHcCCEEEEEeccCC
Q 007454          173 SAMKKRIMDFLN--------ISENDYVYDYES-EAVEAMI---------------------R-TSEKRGARVMSAEFSWP  221 (603)
Q Consensus       173 ~~aR~~Ia~~ln--------a~~~e~vf~~es-~sV~~~~---------------------~-~a~~~Ga~V~~~~~~~~  221 (603)
                      .+.|+.|+++++        +++++++++..+ +++..++                     . .++..|+++..++.+..
T Consensus        86 ~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~  165 (428)
T 1iay_A           86 PEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESS  165 (428)
T ss_dssp             HHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCc
Confidence            478888898887        778888775432 1221111                     1 12246888888887532


Q ss_pred             -ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCC-C-CCCCCCCC
Q 007454          222 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPK-D-MDSFGLSL  294 (603)
Q Consensus       222 -~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~-~-m~~ldls~  294 (603)
                       +..++.++|++.|........++++|.++..+|.||.++|   ++.+ +.|+++|+++++|.++.... + -...++..
T Consensus       166 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~  245 (428)
T 1iay_A          166 NNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAE  245 (428)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHH
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHH
Confidence             2367999999988642111236899999999999999999   6544 57899999999999876521 0 00112211


Q ss_pred             ---------CCCc--EEEEcccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454          295 ---------VRPD--FLICSFYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       295 ---------~~~D--flv~S~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                               +++|  +++.|++|+||  ..|  +|++++. +++++.+...                             
T Consensus       246 ~~~~~~~~~~~~d~viv~~s~sK~~g--~~Glr~G~~~~~~~~~~~~~~~~-----------------------------  294 (428)
T 1iay_A          246 ILDEQEMTYCNKDLVHIVYSLSKDMG--LPGFRVGIIYSFNDDVVNCARKM-----------------------------  294 (428)
T ss_dssp             HHTSGGGTTSCTTSEEEEEESTTTSS--CGGGCEEEEEESCHHHHHHHHHH-----------------------------
T ss_pred             hccccccccCCCCcEEEEecchhhcC--CCCceEEEEEeCCHHHHHHHHHH-----------------------------
Confidence                     2378  89999999999  447  5999984 4443322210                             


Q ss_pred             cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH---HHhcCHHHH
Q 007454          361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMI  437 (603)
Q Consensus       361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~---~~~iGl~~i  437 (603)
                              ....+.|..+..++.                                        .+++.   +++ .++.+
T Consensus       295 --------~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~-~~~~~  325 (428)
T 1iay_A          295 --------SSFGLVSTQTQYFLA----------------------------------------AMLSDEKFVDN-FLRES  325 (428)
T ss_dssp             --------HTTSCCCHHHHHHHH----------------------------------------HHTTCHHHHHH-HHHHH
T ss_pred             --------HhcccCCHHHHHHHH----------------------------------------HHhcChHHHHH-HHHHH
Confidence                    000122222222211                                        12221   111 24567


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC---ccCHHHHHHHHhcCCcEEeeCcc
Q 007454          438 SRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE---KIEPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       438 ~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~---~v~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      .++.+...++|.+.|.++      |   ++++.+    ..+..+.+.+++....   .-...+.++|++++||.++.|..
T Consensus       326 ~~~~~~~~~~l~~~L~~~------g---~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~  392 (428)
T 1iay_A          326 AMRLGKRHKHFTNGLEVV------G---IKCLKN----NAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSS  392 (428)
T ss_dssp             HHHHHHHHHHHHHHHHHT------T---CCBCCC----SSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGG
T ss_pred             HHHHHHHHHHHHHHHHhc------C---CcccCC----CeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchh
Confidence            778888899999999875      2   333433    2456777887652110   01123456666667999998755


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |..                                  ...+.+|+|++ ..|.+|++++++.|++++++
T Consensus       393 ~~~----------------------------------~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          393 FEC----------------------------------QEPGWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             GTC----------------------------------SSSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             hCC----------------------------------CCCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            421                                  11258999999 68999999999999998753

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.63  E-value=4e-15  Score=161.30  Aligned_cols=147  Identities=13%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHH----cCCE---EEEE---------------------eccC--
Q 007454          172 ESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEK----RGAR---VMSA---------------------EFSW--  220 (603)
Q Consensus       172 ~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~----~Ga~---V~~~---------------------~~~~--  220 (603)
                      ..+.|++|++++|.  ++++|+.. ++++...+..+.+    .|.+   |...                     +...  
T Consensus        78 ~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~  155 (467)
T 1ax4_A           78 YYDLKDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAF  155 (467)
T ss_dssp             HHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGG
T ss_pred             HHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccc
Confidence            45778999999986  46777653 2444444444444    5554   3322                     1110  


Q ss_pred             -------CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHH---HH-HHHHhCCcEEEEeccccC-----
Q 007454          221 -------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYL---WM-RIAQENDWHILIDACALG-----  283 (603)
Q Consensus       221 -------~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~---~i-~~a~e~g~~vlvDAaq~~-----  283 (603)
                             .++.++.++|+++|...+  .+++++|++...+|.| |.++|.+   .+ ++|+++|+++++|+++..     
T Consensus       156 ~~~~~~~~~~~~d~~~le~~i~~~~--~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~  233 (467)
T 1ax4_A          156 DSETYDDWKGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF  233 (467)
T ss_dssp             CTTSCCTTTTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred             cccccCCcccccCHHHHHHHHHhcC--CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchh
Confidence                   034678999999997421  1258999999999999 8888864   33 478999999999998765     


Q ss_pred             ------CCCCCCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEe-C-CCCc
Q 007454          284 ------PKDMDSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVK-K-STVP  326 (603)
Q Consensus       284 ------~~~m~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vk-k-~~~~  326 (603)
                            ++  ..+++..      ..+|++++|+||+||. |.| |+++.+ + ++++
T Consensus       234 ~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~s~sK~~g~-~~G-g~~~~~d~~~l~~  286 (467)
T 1ax4_A          234 IKARDPKY--KNATIKEVIFDMYKYADALTMSAKKDPLL-NIG-GLVAIRDNEEIFT  286 (467)
T ss_dssp             HHHHCGGG--TTCCHHHHHHHHGGGCSEEEEETTSTTCC-SSC-EEEEESSCHHHHH
T ss_pred             cccccccc--CCCchhhhhhhhccccceEEEeccccCCC-Ccc-eEEEeCCHHHHHH
Confidence                  34  2343322      2489999999999995 545 666666 4 4443

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.63  E-value=5.5e-15  Score=159.08  Aligned_cols=281  Identities=15%  Similarity=0.146  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHcC--------CCCCcEEEeccC-chHHH---------------------HHHHHH-HcCCEEEEEeccCC
Q 007454          173 SAMKKRIMDFLN--------ISENDYVYDYES-EAVEA---------------------MIRTSE-KRGARVMSAEFSWP  221 (603)
Q Consensus       173 ~~aR~~Ia~~ln--------a~~~e~vf~~es-~sV~~---------------------~~~~a~-~~Ga~V~~~~~~~~  221 (603)
                      .+.|++|+++++        +++++++++... +++..                     ....++ ..|+++..+++++.
T Consensus        89 ~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~  168 (435)
T 3piu_A           89 PAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSS  168 (435)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCc
Confidence            478888999888        678888775321 11111                     122233 46888888887632


Q ss_pred             -ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCCCCC
Q 007454          222 -RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDSFGL  292 (603)
Q Consensus       222 -~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~ldl  292 (603)
                       ...++.++|++.|...+....++++|.+...+|.||.++|.+.+    ++|+++|+++++|.++..    ++  ....+
T Consensus       169 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~  246 (435)
T 3piu_A          169 NGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISV  246 (435)
T ss_dssp             GTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCH
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCH
Confidence             13479999999997422222368999999999999999998532    458999999999998765    32  11222


Q ss_pred             CC----CCC---------cEEEEcccccCCCCCCc--eEEEEEeCC-CCcCcCCCCCCCceeccccccccccccccCCCC
Q 007454          293 SL----VRP---------DFLICSFYQIFGENPSG--FGCLFVKKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCE  356 (603)
Q Consensus       293 s~----~~~---------Dflv~S~hK~fG~~P~G--~G~L~vkk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~  356 (603)
                      ..    .++         ++++.|++|.||  ..|  +|++++++. +...++..                         
T Consensus       247 ~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g--~~G~r~G~~~~~~~~~~~~~~~~-------------------------  299 (435)
T 3piu_A          247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLG--LPGFRVGAIYSNDDMVVAAATKM-------------------------  299 (435)
T ss_dssp             HHHHHC-------CGGGGEEEEEESSSSSC--CGGGCEEEEEESCHHHHHHHHHH-------------------------
T ss_pred             HHhccccccccccCCCCCEEEEEeeecccC--CCceeEEEEEeCCHHHHHHHHHH-------------------------
Confidence            11    112         288999999998  336  799988543 22212100                         


Q ss_pred             CCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH---HHHhcC
Q 007454          357 TEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD---QVDSLG  433 (603)
Q Consensus       357 ~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald---~~~~iG  433 (603)
                              .    ..++.+.....++.                                        ..++   ++++ .
T Consensus       300 --------~----~~~~~~~~~~~~~~----------------------------------------~~l~~~~~~~~-~  326 (435)
T 3piu_A          300 --------S----SFGLVSSQTQHLLS----------------------------------------AMLSDKKLTKN-Y  326 (435)
T ss_dssp             --------G----GGSCCCHHHHHHHH----------------------------------------HHHHCHHHHHH-H
T ss_pred             --------h----hcCCCCHHHHHHHH----------------------------------------HHhcChHHHHH-H
Confidence                    0    01122222222211                                        1222   1111 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc---cCHHHHHHHHhcCCcEEe
Q 007454          434 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK---IEPVLVQKLADRENISLS  510 (603)
Q Consensus       434 l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~---v~~~~V~~Lad~~gI~lr  510 (603)
                      +....++.+...++|.+.|.++      |   ++++.+    ..+.++.+.+.+.....   -..+++++|++++||.++
T Consensus       327 ~~~~~~~~~~~~~~l~~~L~~~------g---~~~~~~----~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~  393 (435)
T 3piu_A          327 IAENHKRLKQRQKKLVSGLQKS------G---ISCLNG----NAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNIS  393 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT------T---CEECCC----CSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc------C---CcccCC----CeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEe
Confidence            4566778888889999999875      2   455543    23568888886532110   012456677777799999


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .|..|..                                  .+.+.+|+|++.. |.+||+++++.|++++++
T Consensus       394 ~g~~~~~----------------------------------~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~  431 (435)
T 3piu_A          394 PGSSCHC----------------------------------TEPGWFRVCFANL-PERTLDLAMQRLKAFVGE  431 (435)
T ss_dssp             EGGGGTC----------------------------------SSTTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCC----------------------------------CCCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence            8876642                                  1136899999888 999999999999998865

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.62  E-value=1e-14  Score=157.46  Aligned_cols=322  Identities=13%  Similarity=0.057  Sum_probs=189.0

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--  183 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--  183 (603)
                      .+.|.|+.+-.+ +.++.+++++.+.+...                    ++.+....|+..  ....+.|++|++++  
T Consensus        69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~~--~g~~~lr~~ia~~~~~  126 (449)
T 3qgu_A           69 AKIISLGIGDTTEPLPKYIADAMAKAAAGL--------------------ATREGYSGYGAE--QGQGALREAVASTFYG  126 (449)
T ss_dssp             CCCEECSSCCCCCCCCHHHHHHHHHHHHGG--------------------GGSCCCCCSTTT--TCCHHHHHHHHHHHHT
T ss_pred             CCEEEeeCCCCCCCCCHHHHHHHHHHHHhh--------------------ccccCCCCCCCC--CCcHHHHHHHHHHHHc
Confidence            457888876554 36778888876543211                    000111112111  12357899999998  


Q ss_pred             --CCCCCcEEEeccCc-hHHHH--------------------HHHHHHcCCE----------EEEEeccCC-ccccCHHH
Q 007454          184 --NISENDYVYDYESE-AVEAM--------------------IRTSEKRGAR----------VMSAEFSWP-RLRINSEK  229 (603)
Q Consensus       184 --na~~~e~vf~~es~-sV~~~--------------------~~~a~~~Ga~----------V~~~~~~~~-~g~i~~~~  229 (603)
                        ++++++++|+.... ++..+                    ...++..|++          +..++++.. ....+.  
T Consensus       127 g~~~~~~~i~~t~G~~~al~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~--  204 (449)
T 3qgu_A          127 HAGRAADEIFISDGSKCDIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL--  204 (449)
T ss_dssp             TTTCCGGGEEEESCHHHHHHHHHHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG--
T ss_pred             CCCCCHHHEEEccCHHHHHHHHHHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh--
Confidence              78889998875432 22222                    1222333444          555554321 111111  


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccC----CCCCCCCCCCC----CCC
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALG----PKDMDSFGLSL----VRP  297 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~----~~~  297 (603)
                           ..    .+++++|.+...+|.||.++|.+.   + ++|+++|+++++|.++..    ++  .+..+..    .+.
T Consensus       205 -----~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~  273 (449)
T 3qgu_A          205 -----SK----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEV  273 (449)
T ss_dssp             -----GG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGT
T ss_pred             -----hH----cCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCc
Confidence                 10    136789998899999999999653   2 358899999999998765    32  2333332    256


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++++.|++|.||.+..++|+++++++.++.....    ..       ..+.                ........+.+..
T Consensus       274 ~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~----~~-------~~~~----------------~~~~~~~~~~~~~  326 (449)
T 3qgu_A          274 AIETCSFSKYAGFTGVRLGWTVVPKALKYANGEP----VH-------ADWN----------------RVMTTCFNGASNI  326 (449)
T ss_dssp             EEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCB----HH-------HHHH----------------HHHHHSCCCCCHH
T ss_pred             EEEEecchhhcCCccceeEEEecCHHHHhhhhhh----HH-------HHHH----------------HHhhcccCCCCHH
Confidence            7999999999983223389999988775420000    00       0000                0000111233333


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      +..+..                                        ++++......++.+.++.+.++++|.+.|.++  
T Consensus       327 ~~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--  364 (449)
T 3qgu_A          327 VQAGGL----------------------------------------ACLQPEGLKEMNAMIKFYKENAQILKTTFTEM--  364 (449)
T ss_dssp             HHHHHH----------------------------------------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHH----------------------------------------HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence            332221                                        12221101125677788889999999999876  


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                          |   +++++|    ..+..+.+.+++.+    ..+++++|++++||.++.|..|...                   
T Consensus       365 ----g---~~~~~~----~~~~~~~~~~~~~~----~~~~~~~l~~~~gI~v~pg~~f~~~-------------------  410 (449)
T 3qgu_A          365 ----G---FSVYGG----DDAPYIWVGFPGKP----SWDVFAEILERCNIVTTPGSGYGPA-------------------  410 (449)
T ss_dssp             ----T---CCEEES----SSSSEEEEECTTSC----HHHHHHHHHHHHCEECEEGGGGCGG-------------------
T ss_pred             ----C---CeeeCC----CCeeEEEEECCCCC----HHHHHHHHHHHCCEEEecchHhCCC-------------------
Confidence                2   345554    24678888876322    2345667888889999988776421                   


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                     +.+.||+|+  .++.|||+++++.|+++++.
T Consensus       411 ---------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~~  439 (449)
T 3qgu_A          411 ---------------GEGFVRASA--FGSRENILEAVRRFKEAYGK  439 (449)
T ss_dssp             ---------------GTTEEEEEC--CSCHHHHHHHHHHHHHHHC-
T ss_pred             ---------------CCCeEEEEe--cCCHHHHHHHHHHHHHHHHh
Confidence                           126899995  45999999999999988755

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.62  E-value=6.3e-14  Score=151.57  Aligned_cols=323  Identities=13%  Similarity=0.108  Sum_probs=196.8

Q ss_pred             CCceeeecCC------CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFG------IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa------~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++      .++.++.+++++.+.+...                    . .+...  + -......+.+++|+
T Consensus        48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--------------------~-~~~~~--~-~~~~~~~~l~~~la  103 (449)
T 3a8u_X           48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTL--------------------D-YSPGF--Q-YGHPLSFQLAEKIT  103 (449)
T ss_dssp             TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTC--------------------S-CCCSS--S-CCCHHHHHHHHHHH
T ss_pred             CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhC--------------------C-Ccccc--c-cCCHHHHHHHHHHH
Confidence            4578999862      3445889999987654321                    0 00000  0 11245568889999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC------------------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP------------------------------  221 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~------------------------------  221 (603)
                      +++++++++++|+.. ++++...+..+..        .|.+|......+.                              
T Consensus       104 ~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~  183 (449)
T 3a8u_X          104 DLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLP  183 (449)
T ss_dssp             TTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEEC
T ss_pred             HhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEec
Confidence            999888888888754 3455554444432        3455554332111                              


Q ss_pred             --c-c-----ccC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454          222 --R-L-----RIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       222 --~-g-----~i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa  280 (603)
                        . .     .++        .++|++.|....  .+++++|.+...+|.||.+.|    ++.+ ++|+++|+++++|.+
T Consensus       184 ~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev  261 (449)
T 3a8u_X          184 HTLLASNAYSRGMPKEGGIALADELLKLIELHD--ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEV  261 (449)
T ss_dssp             CCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred             CCccccCccccCChHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEecc
Confidence              0 0     024        888998886310  025788888777788999999    9866 589999999999999


Q ss_pred             cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCC
Q 007454          281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS  354 (603)
Q Consensus       281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~  354 (603)
                      +. .+..  +..++.....+|++++|  |.||  + |   +|++++++++++.+.+... +        .+ .  .    
T Consensus       262 ~~~~g~~g~~~~~~~~~~~~di~s~s--K~l~--~-G~~~~G~~~~~~~~~~~l~~~~~-~--------~~-~--~----  320 (449)
T 3a8u_X          262 ITGFGRTGSMFGADSFGVTPDLMCIA--KQVT--N-GAIPMGAVIASTEIYQTFMNQPT-P--------EY-A--V----  320 (449)
T ss_dssp             TTTTTTTSSSSHHHHHTCCCSEEEEC--GGGG--T-TSSCCEEEEEEHHHHHHHHTCSS-C--------TT-S--C----
T ss_pred             ccCccccCcchhhhhcCCCCCEEEEc--cccc--C-CCCceEEEEECHHHHHHhhccCc-c--------cc-c--c----
Confidence            84 4431  11122223458988555  9998  4 6   9999999877655543100 0        00 0  0    


Q ss_pred             CCCCcccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc
Q 007454          355 CETEPEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL  432 (603)
Q Consensus       355 ~~~e~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i  432 (603)
                                ..  ...+|  .|..+.++..                                        ++++.+++ 
T Consensus       321 ----------~~--~~~~t~~~~~~~~aa~~----------------------------------------aal~~~~~-  347 (449)
T 3a8u_X          321 ----------EF--PHGYTYSAHPVACAAGL----------------------------------------AALCLLQK-  347 (449)
T ss_dssp             ----------SS--CCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHH-
T ss_pred             ----------cc--cccCCCcccHHHHHHHH----------------------------------------HHHHHHHh-
Confidence                      00  01222  2333332221                                        56776654 


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc-cCH-HHHHHHHhcCCcEEe
Q 007454          433 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEP-VLVQKLADRENISLS  510 (603)
Q Consensus       433 Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~-v~~-~~V~~Lad~~gI~lr  510 (603)
                        +.+.++++.+.+++.++|.++.     +.|.+..+     ...|.++.+.+.+..... ..+ .+..+|. ++||.++
T Consensus       348 --~~~~~~~~~~~~~l~~~L~~l~-----~~~~~~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~  414 (449)
T 3a8u_X          348 --ENLVQSVAEVAPHFEKALHGIK-----GAKNVIDI-----RNFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGFYVR  414 (449)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHTTT-----TSTTEEEE-----EEETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTEECE
T ss_pred             --cCHHHHHHHHHHHHHHHHHHHh-----cCCCeEEE-----eeeEEEEEEEEecCcccccccHHHHHHHHH-HCCcEEe
Confidence              2466788899999999998863     13333221     125788999887532110 012 2344454 4588876


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .|                                        + +.||+|+++.+|.+||+++++.|++++..
T Consensus       415 ~~----------------------------------------g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~  446 (449)
T 3a8u_X          415 FG----------------------------------------G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNK  446 (449)
T ss_dssp             EE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cC----------------------------------------C-CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence            42                                        1 48999999999999999999999998754

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.62  E-value=3.4e-14  Score=150.09  Aligned_cols=246  Identities=11%  Similarity=0.029  Sum_probs=162.4

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEe
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILID  278 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvD  278 (603)
                      ...++..|+++..++++..+..++.++|++.+..      +++++.+...+|.||.++|.+.   + ++|+++|+++++|
T Consensus       134 ~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~~------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D  207 (396)
T 3jtx_A          134 EGATLLGGGEIHFANCPAPSFNPDWRSISEEVWK------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASD  207 (396)
T ss_dssp             HHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHHH------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred             HHHHHHcCCEEEEeecCCCCCccCHHHHHHhhcc------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence            3445667888888887533446788899998874      5899999899999999999875   3 3678999999999


Q ss_pred             ccccCCCCC--CCCCCC--------CCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceecccccccc
Q 007454          279 ACALGPKDM--DSFGLS--------LVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQL  346 (603)
Q Consensus       279 Aaq~~~~~m--~~ldls--------~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~  346 (603)
                      .++.....-  .++.+-        ..+.++++.|++|.||.  .|  +|+++.++++++.+...               
T Consensus       208 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--~G~r~G~~~~~~~~~~~~~~~---------------  270 (396)
T 3jtx_A          208 ECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV--PGLRSGFVAGDAELLKNFLLY---------------  270 (396)
T ss_dssp             CTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC--GGGCCEEEEECHHHHHHHHHH---------------
T ss_pred             ccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCC--cccceEEEEeCHHHHHHHHHH---------------
Confidence            987652100  122211        25778999999998883  35  68777665544333210               


Q ss_pred             ccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHH
Q 007454          347 WLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL  426 (603)
Q Consensus       347 ~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  426 (603)
                                        ..  ...++.|..+..++.                                        +++
T Consensus       271 ------------------~~--~~~~~~~~~~~~a~~----------------------------------------~~l  290 (396)
T 3jtx_A          271 ------------------RT--YHGSAMSIPVQRASI----------------------------------------AAW  290 (396)
T ss_dssp             ------------------HH--HHTCCCCHHHHHHHH----------------------------------------HHH
T ss_pred             ------------------Hh--hcccCCCHHHHHHHH----------------------------------------HHh
Confidence                              00  113344555444332                                        234


Q ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCC
Q 007454          427 DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADREN  506 (603)
Q Consensus       427 d~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~g  506 (603)
                      +.  .-.+....++.+...+++.+.|.++.          .++.|    ..+..+.+.+++.+    ..+++++|++++|
T Consensus       291 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~~----~~~~~~~~~~~~~~----~~~~~~~l~~~~g  350 (396)
T 3jtx_A          291 DD--EQHVIDNRRLYQEKFERVIPILQQVF----------DVKLP----DASFYIWLKVPDGD----DLAFARNLWQKAA  350 (396)
T ss_dssp             HC--CHHHHHHHHHHHHHHHHHHHHHTTTS----------CCCCC----SSSSEEEEECTTSC----HHHHHHHHHHHHC
T ss_pred             CC--HHHHHHHHHHHHHHHHHHHHHHHhcC----------CccCC----CeeEEEEEECCCCC----HHHHHHHHHHHCC
Confidence            32  11356677788888889999887641          12222    23567777776522    2345666778889


Q ss_pred             cEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          507 ISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       507 I~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      |.++.|..|......                            .....+.||+|++.  +.+||+++++.|++++
T Consensus       351 i~v~~g~~~~~~~~~----------------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          351 IQVLPGRFLARDTEQ----------------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY  395 (396)
T ss_dssp             EECEEGGGGCCCCTT----------------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred             EEEeCChHhCCcccc----------------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence            999999888654110                            11234799999987  9999999999998875

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.62  E-value=7.2e-15  Score=155.63  Aligned_cols=269  Identities=15%  Similarity=0.166  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHc----C--CCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccC-Ccc
Q 007454          173 SAMKKRIMDFL----N--ISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSW-PRL  223 (603)
Q Consensus       173 ~~aR~~Ia~~l----n--a~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~-~~g  223 (603)
                      .+.|+.|++++    |  +++++++++... ++                     .......++..|+++..++.+. .+.
T Consensus        71 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~  150 (385)
T 1b5p_A           71 PELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGF  150 (385)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTT
T ss_pred             HHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCC
Confidence            36777777776    4  456788765321 11                     1123345567799999999863 134


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-CCCCCCCCC--C
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD-MDSFGLSLV--R  296 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~-m~~ldls~~--~  296 (603)
                      .++.++|++.|..      +++++.++..+|.||.++|   ++.+ ++|+++|++|++|.++..... -...++..+  +
T Consensus       151 ~~d~~~l~~~l~~------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  224 (385)
T 1b5p_A          151 VPDPERVRRAITP------RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPE  224 (385)
T ss_dssp             CCCHHHHHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTT
T ss_pred             CCCHHHHHHhcCC------CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCC
Confidence            6899999888753      5899999999999999999   4433 578999999999998654210 001122222  5


Q ss_pred             CcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC-
Q 007454          297 PDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT-  373 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT-  373 (603)
                      .++++.|++|+||  +.|  +|++++++++++.+.+..                                     ..++ 
T Consensus       225 ~~i~~~s~SK~~~--~~G~RiG~~~~~~~~~~~l~~~~-------------------------------------~~~~~  265 (385)
T 1b5p_A          225 HTLTVNGAAKAFA--MTGWRIGYACGPKEVIKAMASVS-------------------------------------RQSTT  265 (385)
T ss_dssp             TEEEEEESTTTTT--CGGGCCEEEECCHHHHHHHHHHH-------------------------------------HTTTC
T ss_pred             CEEEEEechhhcC--CcccceEEEEeCHHHHHHHHHHH-------------------------------------hhccC
Confidence            6899999999999  558  899998765543332100                                     0111 


Q ss_pred             -CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHH---HHhcCHHHHHHHHHHHHHHHH
Q 007454          374 -NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQ---VDSLGLTMISRRGRCLINWLV  449 (603)
Q Consensus       374 -~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~---~~~iGl~~i~~r~~~L~~~L~  449 (603)
                       .+.....++.                                        ++++.   ... .++++.++.+..++++.
T Consensus       266 ~~~~~~~~a~~----------------------------------------~~l~~~~~~~~-~~~~~~~~~~~~~~~l~  304 (385)
T 1b5p_A          266 SPDTIAQWATL----------------------------------------EALTNQEASRA-FVEMAREAYRRRRDLLL  304 (385)
T ss_dssp             SCCHHHHHHHH----------------------------------------HHHHCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH----------------------------------------HHHhCCCcchH-HHHHHHHHHHHHHHHHH
Confidence             1211111111                                        23321   111 25667778888888999


Q ss_pred             HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      +.|.++      |   +++++|.    -+..+-..+... |  ++.. ++++|+ ++||.++.|..|..           
T Consensus       305 ~~L~~~------g---~~~~~~~----~~~~~~~~~~~~-~--~~~~~l~~~l~-~~gv~v~~g~~f~~-----------  356 (385)
T 1b5p_A          305 EGLTAL------G---LKAVRPS----GAFYVLMDTSPI-A--PDEVRAAERLL-EAGVAVVPGTDFAA-----------  356 (385)
T ss_dssp             HHHHHH------T---CCBCCCS----BTTEEEEECTTT-C--SSHHHHHHHHH-HTTEECEESGGGTC-----------
T ss_pred             HHHHHC------C---CeecCCC----eeEEEEEecCCC-C--CCHHHHHHHHH-HCCeEEecccccCC-----------
Confidence            999875      1   3344442    233344455321 1  2333 445555 88999998866521           


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                               .+.||+|++  ++.+++++.++.|+++++
T Consensus       357 -------------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          357 -------------------------FGHVRLSYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             -------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC-
T ss_pred             -------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence                                     258999998  899999999988877653

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.62  E-value=4.2e-14  Score=149.98  Aligned_cols=307  Identities=12%  Similarity=0.088  Sum_probs=189.2

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++.      ++.++.+++++.+.+...                    .+.++.  +   .....++.+++|+
T Consensus        38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la   92 (397)
T 2ord_A           38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--------------------IHCSNL--F---WNRPQMELAELLS   92 (397)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------SCCCTT--S---EEHHHHHHHHHHH
T ss_pred             CCCEEEECCccccccccCCCCHHHHHHHHHHHHhc--------------------ccCccc--c---CCHHHHHHHHHHH
Confidence            45789999765      335788888876543210                    111111  1   2355678999999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH------c-CCEEEEEeccCCc---------c-c------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK------R-GARVMSAEFSWPR---------L-R------------------  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~------~-Ga~V~~~~~~~~~---------g-~------------------  224 (603)
                      +++|  +++++|... ++++..++..+..      . +.+|...+..+..         + .                  
T Consensus        93 ~~~g--~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~  170 (397)
T 2ord_A           93 KNTF--GGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF  170 (397)
T ss_dssp             HTTT--SCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT
T ss_pred             HhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC
Confidence            9998  467777653 3455555555442      3 3466655432210         1 0                  


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-ccc---HHHH-HHHHhCCcEEEEeccccC-CCCCCCCCCCCC--C
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YLWM-RIAQENDWHILIDACALG-PKDMDSFGLSLV--R  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~p---l~~i-~~a~e~g~~vlvDAaq~~-~~~m~~ldls~~--~  296 (603)
                      .+.++|++.|.      +++++|.+...+|.||. .+|   ++.+ ++|+++|+++++|.++.. +..=..+.+..+  .
T Consensus       171 ~d~~~l~~~l~------~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  244 (397)
T 2ord_A          171 NNVEDLRRKMS------EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVV  244 (397)
T ss_dssp             TCHHHHHHHCC------TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred             CCHHHHHHHhh------cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCC
Confidence            26778887775      26899999999999999 554   4434 478999999999999862 211002222222  3


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +|++  |++|+||. +.++|+++++++.+ .+.+...++                                   .-+.|.
T Consensus       245 ~d~~--s~sK~~~~-G~r~G~~~~~~~~~-~l~~~~~~~-----------------------------------~~~~~~  285 (397)
T 2ord_A          245 PDVL--TTAKGLGG-GVPIGAVIVNERAN-VLEPGDHGT-----------------------------------TFGGNP  285 (397)
T ss_dssp             CSEE--EECGGGGT-TSCCEEEEECSTTC-CCCTTSSCC-----------------------------------SSTTCH
T ss_pred             CCee--eeccccCC-CcCeEEEEEchHhc-ccCCCCcCC-----------------------------------CCCCCH
Confidence            8977  55799983 45699999998865 454211000                                   001233


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      .+.+++.                                        ++++.++.   +.+.++.+.+.++|.+.|.++.
T Consensus       286 ~~~~a~~----------------------------------------~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~  322 (397)
T 2ord_A          286 LACRAGV----------------------------------------TVIKELTK---EGFLEEVEEKGNYLMKKLQEMK  322 (397)
T ss_dssp             HHHHHHH----------------------------------------HHHHHHTS---TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHHHHHHH
Confidence            3332221                                        46665443   4567788888999999987752


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      .    +.+.+....     ..+.++.|.+.+.    .... ++++|. ++||.++.|                       
T Consensus       323 ~----~~~~~~~~~-----~~g~~~~~~~~~~----~~~~~l~~~l~-~~gi~v~~~-----------------------  365 (397)
T 2ord_A          323 E----EYDVVADVR-----GMGLMIGIQFREE----VSNREVATKCF-ENKLLVVPA-----------------------  365 (397)
T ss_dssp             H----HCTTEEEEE-----EETTEEEEEECTT----SCHHHHHHHHH-HTTEECEEE-----------------------
T ss_pred             H----hCCceEEEE-----EEeEEEEEEECCh----HHHHHHHHHHH-HCCCEEccC-----------------------
Confidence            0    122232111     2477889988652    1233 344454 489987753                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                    +   .+.||+|+++.++.+|++++++.|++++.
T Consensus       366 --------------~---~~~iRis~~~~~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          366 --------------G---NNTIRFLPPLTVEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             --------------T---TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             --------------C---CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence                          0   14899999999999999999999998874

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.61  E-value=8.1e-15  Score=152.14  Aligned_cols=287  Identities=14%  Similarity=0.145  Sum_probs=183.3

Q ss_pred             CceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC--
Q 007454          108 NHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN--  184 (603)
Q Consensus       108 ~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln--  184 (603)
                      +.+|||++... +.++.+++++.+.+...                        ..+.|+..   ...+.|+.|+++++  
T Consensus        20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~~---~~~~lr~~la~~~~~~   72 (335)
T 1uu1_A           20 DKTYLALNENPFPFPEDLVDEVFRRLNSD------------------------ALRIYYDS---PDEELIEKILSYLDTD   72 (335)
T ss_dssp             CSEEESSCCCSSCCCHHHHHHHHHTCCGG------------------------GGGSCCCS---SCHHHHHHHHHHHTCS
T ss_pred             cceECCCCCCCCCCCHHHHHHHHHHhhhh------------------------hhhcCCCC---chHHHHHHHHHHcCCC
Confidence            57999999885 46889999987754210                        00011110   14589999999999  


Q ss_pred             -CCCCcEEEeccC-chH-----------------HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCee
Q 007454          185 -ISENDYVYDYES-EAV-----------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRG  245 (603)
Q Consensus       185 -a~~~e~vf~~es-~sV-----------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~  245 (603)
                       +++++++++... +++                 ......++..|+++..++.+ +++.++.++|           ++++
T Consensus        73 ~~~~~~v~~~~G~~~al~~~~~~~gd~Vl~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l-----------~~~~  140 (335)
T 1uu1_A           73 FLSKNNVSVGNGADEIIYVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT-KDLRIPEVNV-----------GEGD  140 (335)
T ss_dssp             SCCGGGEEEESSHHHHHHHHHHHSSEEEECSSSCHHHHHHHHHHTCEEEECCCC-TTSCCCCCCC-----------CTTE
T ss_pred             CCCHHHEEEcCChHHHHHHHHHHhCCcEEECCCcHHHHHHHHHcCCeEEEeccC-CCCCCCHHHc-----------CCCC
Confidence             888899876432 122                 22333445567777777665 2334554444           1578


Q ss_pred             EEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCC-CCCCCCC-CCCCCCcEEEEcccccCCCCCCc--eEEEEE
Q 007454          246 LFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGP-KDMDSFG-LSLVRPDFLICSFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       246 Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~-~~m~~ld-ls~~~~Dflv~S~hK~fG~~P~G--~G~L~v  320 (603)
                      +|.++..+|.||.++|.+.+. +++..| ++++|.++... .. ..++ +...+.++++.|++|+||  +.|  +|++++
T Consensus       141 ~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g--~~G~r~G~~~~  216 (335)
T 1uu1_A          141 VVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFS--LAAQRVGYVVA  216 (335)
T ss_dssp             EEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTT--CGGGCCEEEEE
T ss_pred             EEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcC--CcccCeEEEEe
Confidence            999888899999999999664 677778 89999987631 10 1133 234567899999999999  557  799999


Q ss_pred             eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhh
Q 007454          321 KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR  400 (603)
Q Consensus       321 kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~  400 (603)
                      ++++++.+.+..                                     ...+.|..+..++.                 
T Consensus       217 ~~~~~~~l~~~~-------------------------------------~~~~~~~~~~~~~~-----------------  242 (335)
T 1uu1_A          217 SEKFIDAYNRVR-------------------------------------LPFNVSYVSQMFAK-----------------  242 (335)
T ss_dssp             CHHHHHHHHHHS-------------------------------------CTTCSCHHHHHHHH-----------------
T ss_pred             CHHHHHHHHHhc-------------------------------------CCCCcCHHHHHHHH-----------------
Confidence            776544333100                                     01233444433322                 


Q ss_pred             hhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE
Q 007454          401 AEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA  480 (603)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i  480 (603)
                                             ++++..+  .++.+.++.+.++++|.+.|.++      |   ++++ |    ..++.
T Consensus       243 -----------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~------g---~~~~-~----~~~~~  283 (335)
T 1uu1_A          243 -----------------------VALDHRE--IFEERTKFIVEERERMKSALREM------G---YRIT-D----SRGNF  283 (335)
T ss_dssp             -----------------------HHHHTHH--HHHHHHHHHHHHHHHHHHHHHHH------T---CCBC-C----CCSSE
T ss_pred             -----------------------HHhCCHH--HHHHHHHHHHHHHHHHHHHHHHC------C---cEEc-C----CCCeE
Confidence                                   3444311  35677788888999999999875      2   2333 2    23667


Q ss_pred             EEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEE
Q 007454          481 LAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTA  559 (603)
Q Consensus       481 vsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~  559 (603)
                      +.+.+++     .+.. +.++|. ++||.++.+                                         .+.+|+
T Consensus       284 ~~~~~~~-----~~~~~~~~~l~-~~gi~v~~~-----------------------------------------~~~iRi  316 (335)
T 1uu1_A          284 VFVFMEK-----EEKERLLEHLR-TKNVAVRSF-----------------------------------------REGVRI  316 (335)
T ss_dssp             EEEECCT-----HHHHHHHHHHH-HHTEEEEEE-----------------------------------------TTEEEE
T ss_pred             EEEECCC-----CCHHHHHHHHH-HCCEEEEEC-----------------------------------------CCeEEE
Confidence            7777754     1223 344444 579988741                                         148999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 007454          560 SLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       560 Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      |++   +.+|++++++.|+++
T Consensus       317 s~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          317 TIG---KREENDMILRELEVF  334 (335)
T ss_dssp             ECC---CHHHHHHHHHHHHCC
T ss_pred             EeC---CHHHHHHHHHHHHhh
Confidence            985   478999999998764

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.60  E-value=2.9e-15  Score=157.65  Aligned_cols=294  Identities=10%  Similarity=0.026  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccCH
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRINS  227 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~  227 (603)
                      ...+.|++|++++|++  +.+|... ++++                      ......++..|++++.+++++.++.++.
T Consensus        36 ~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~  113 (367)
T 3nyt_A           36 EVTELEDRLADFVGAK--YCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDP  113 (367)
T ss_dssp             HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCG
T ss_pred             HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCH
Confidence            4668899999999985  4544311 1111                      1123345667999999998865588899


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC--cEEEEcc
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP--DFLICSF  304 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~--Dflv~S~  304 (603)
                      ++|+++|..      ++++|.   .+|.||...|++.+ ++|+++|+++++|++|..|.   ..+....+.  |++++||
T Consensus       114 ~~l~~~i~~------~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~---~~~~~~~~~~~di~~~Sf  181 (367)
T 3nyt_A          114 QLLEAAITP------RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGA---SYKGKRSCNLSTVACTSF  181 (367)
T ss_dssp             GGTGGGCCT------TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTC---EETTEETTSSSSEEEEEC
T ss_pred             HHHHHhcCc------CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCC---eECCeeccCCCCEEEEEC
Confidence            999888853      677777   56899999999965 58999999999999998765   233222333  9999996


Q ss_pred             --cccCCCCCCceEEEEEeC--CCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          305 --YQIFGENPSGFGCLFVKK--STVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       305 --hK~fG~~P~G~G~L~vkk--~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                        ||++|  +.|.|.+++.+  .+.+.+++...+|...      .+..                    ...|...-...+
T Consensus       182 ~~~K~l~--~~g~gg~~~~~~~~l~~~~~~~~~~g~~~------~~~~--------------------~~~g~~~~~~~~  233 (367)
T 3nyt_A          182 FPSAPLG--CYGDGGAIFTNDDELATAIRQIARHGQDR------RYHH--------------------IRVGVNSRLDTL  233 (367)
T ss_dssp             CTTSSSC--CSSCCEEEEESCHHHHHHHHHHTBTTEEE------TTEE--------------------CSCCCBCCCCHH
T ss_pred             CCCCcCC--CcCceeEEEeCCHHHHHHHHHHHhcCCCc------Ccee--------------------eccCcCCCccHH
Confidence              89999  65655555543  2333333222223210      0000                    011211111111


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      ..+                                        .++..++  .++.+.++.+.+.+++.+.|.++.    
T Consensus       234 ~aa----------------------------------------~~~~~l~--~~~~~~~~~~~~~~~~~~~L~~~~----  267 (367)
T 3nyt_A          234 QAA----------------------------------------ILLPKLE--IFEEEIALRQKVAAEYDLSLKQVG----  267 (367)
T ss_dssp             HHH----------------------------------------HHHHHHH--THHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHH----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHhccCC----
Confidence            110                                        1222222  356777888899999999998762    


Q ss_pred             CCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          461 EGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       461 ~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                           +++...... .....++.+.+.       +.+.+.+.+.++||.++.++.+.......+..       ....|..
T Consensus       268 -----~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~-------~~~~~~~  328 (367)
T 3nyt_A          268 -----IGTPFIEVNNISVYAQYTVRMD-------NRESVQASLKAAGVPTAVHYPIPLNKQPAVAD-------EKAKLPV  328 (367)
T ss_dssp             -----CCCCCCCTTEECCCSSEEEECS-------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCC-------TTCCCHH
T ss_pred             -----eeccCCCCCCceeeEEEEEEeC-------CHHHHHHHHHHCCCceeccCCCccccChhhhc-------cCCCChH
Confidence                 111111100 011223444443       23445566667899999875422111111100       0000000


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                         .      .......||++++..+|.+||+++++.|+++
T Consensus       329 ---~------~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          329 ---G------DKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             ---H------HHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             ---H------HHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence               0      0112358999999999999999999998764

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.60  E-value=1.4e-14  Score=155.49  Aligned_cols=279  Identities=11%  Similarity=0.081  Sum_probs=180.7

Q ss_pred             HHHHHHHHHHc-----CCCCCc---EEEeccC-ch---------------------HHHHHHHHHH-cCCEEEEEeccCC
Q 007454          173 SAMKKRIMDFL-----NISEND---YVYDYES-EA---------------------VEAMIRTSEK-RGARVMSAEFSWP  221 (603)
Q Consensus       173 ~~aR~~Ia~~l-----na~~~e---~vf~~es-~s---------------------V~~~~~~a~~-~Ga~V~~~~~~~~  221 (603)
                      .+.|+.|++++     ++++++   ++++... ++                     .......++. .|+++..+++++.
T Consensus        91 ~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~  170 (430)
T 2x5f_A           91 EELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDK  170 (430)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCT
T ss_pred             HHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCc
Confidence            47899999999     898888   7765321 11                     1222344556 7999999988753


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHh-----CCcEEEEeccccCC----CCCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQE-----NDWHILIDACALGP----KDMD  288 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e-----~g~~vlvDAaq~~~----~~m~  288 (603)
                      ++.++.++|++.|...   +.++++++++..+|.||.++|   ++.+ ++|++     +|+++++|.++...    +...
T Consensus       171 ~~~~d~~~l~~~l~~~---~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~  247 (430)
T 2x5f_A          171 DGHYTTDSLVEALQSY---NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQ  247 (430)
T ss_dssp             TSCBCSHHHHHHHHHC---CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCS
T ss_pred             cCCcCHHHHHHHHHhc---CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccch
Confidence            4578999999999742   126899999999999999999   5433 57889     99999999987642    1001


Q ss_pred             CC--CCCC-CCC---cEEEEcccccCCCCCCc--eEEEEE---eCCCCcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454          289 SF--GLSL-VRP---DFLICSFYQIFGENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET  357 (603)
Q Consensus       289 ~l--dls~-~~~---Dflv~S~hK~fG~~P~G--~G~L~v---kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~  357 (603)
                      ++  ++.. .+.   ++++.|++|+||  +.|  +|++++   ++++++.+....            ...          
T Consensus       248 ~~~~~~~~~~~~~~~~i~~~s~sK~~~--~~G~riG~~~~~~~~~~~~~~l~~~~------------~~~----------  303 (430)
T 2x5f_A          248 SLFTALTNLHSNAILPIRLDGATKEFF--AWGFRVGFMTFGTSDQTTKEVLEAKV------------KGL----------  303 (430)
T ss_dssp             CHHHHHHTTCCTTEEEEEEEEHHHHTT--CGGGCCEEEEEBCCCHHHHHHHHHHH------------HHH----------
T ss_pred             HHHHHHhhccCCcceEEEEEecccCCC--CCCCCeEEEEEecCCHHHHHHHHHHH------------hhh----------
Confidence            22  3322 334   688999999998  447  699999   665543332100            000          


Q ss_pred             CcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHH----HHHhcC
Q 007454          358 EPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLD----QVDSLG  433 (603)
Q Consensus       358 e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald----~~~~iG  433 (603)
                             .+  ....++|..+..++.                                        ++++    +.+.  
T Consensus       304 -------~~--~~~~~~~~~~~~a~~----------------------------------------~~l~~~~~~~~~--  332 (430)
T 2x5f_A          304 -------IR--SNISSGPLPTQSAVK----------------------------------------HVLKNNKQFDKE--  332 (430)
T ss_dssp             -------HH--TTTSSCCHHHHHHHH----------------------------------------HHHHSCHHHHHH--
T ss_pred             -------hh--cccCCCChHHHHHHH----------------------------------------HHHccChHHHHH--
Confidence                   00  012334444443332                                        3444    2222  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc
Q 007454          434 LTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGS  513 (603)
Q Consensus       434 l~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~  513 (603)
                      ++++.++.+...++|.+.|.+.....  |   ++++.|.    .+-.+.+.+++.+    ...+.++|.+++||.++.| 
T Consensus       333 ~~~~~~~~~~~~~~l~~~L~~~~~~~--g---~~~~~~~----~g~~~~~~~~~~~----~~~~~~~l~~~~gi~v~~g-  398 (430)
T 2x5f_A          333 IEQNIQTLKERYEVTKEVVYADQYHS--H---WQAYDFN----SGYFMAIKVHDVD----PEALRKHLIDKYSIGVIAL-  398 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCGGGTT--T---EEECCCC----BSSEEEEEESSSC----HHHHHHHHHHHHCEECEEC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCC--C---ceeeCCC----ceEEEEeCCCCCC----HHHHHHHHHHhCCEEEecC-
Confidence            45578888889999999997321000  2   6666542    2345777886322    1234555665589998765 


Q ss_pred             ccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          514 LHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       514 ~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                             ..+.+|+|+++ ++.+||+++++.|+++++.
T Consensus       399 ---------------------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~  428 (430)
T 2x5f_A          399 ---------------------------------------NATDIRIAFSC-VEKDDIPHVFDSIAKAIDD  428 (430)
T ss_dssp             ---------------------------------------SSSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence                                                   01589999996 5999999999999998754

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.60  E-value=8.7e-14  Score=147.48  Aligned_cols=309  Identities=12%  Similarity=0.108  Sum_probs=188.8

Q ss_pred             CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+++..      ..++.+++++.+.+...        +         +..   +.     ......++.+++++
T Consensus        34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------~---------~~~---~~-----~~~~~~~~l~~~la   88 (395)
T 3nx3_A           34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKL--------L---------HTS---NL-----YYNENIAAAAKNLA   88 (395)
T ss_dssp             TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTC--------S---------CCC---TT-----SBCHHHHHHHHHHH
T ss_pred             CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhc--------c---------ccc---cc-----cCCHHHHHHHHHHH
Confidence            457899998762      24788888877643211        0         000   00     01345678889999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cCCEEEEEeccCC------------------------ccc----
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RGARVMSAEFSWP------------------------RLR----  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~Ga~V~~~~~~~~------------------------~g~----  224 (603)
                      +++|  +++++|... ++++...+..+..       .|.+|...+..+.                        +..    
T Consensus        89 ~~~~--~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (395)
T 3nx3_A           89 KASA--LERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY  166 (395)
T ss_dssp             HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT
T ss_pred             HhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC
Confidence            9998  567777654 3455554444432       2456665432221                        000    


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~  296 (603)
                      .+.++|+++|.      +++++|.+...+|.+|.+.|    ++.+ ++|+++|+++++|.++. .+..  +..++.....
T Consensus       167 ~d~~~l~~~l~------~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~  240 (395)
T 3nx3_A          167 NDISSVEKLVN------EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQIL  240 (395)
T ss_dssp             TCHHHHHTTCC------TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred             CCHHHHHHhcc------CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCC
Confidence            16778887775      36888888889999999988    8765 48999999999999876 3321  1122333456


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCC-CcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKST-VPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~-~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      +|++++|  |.||. +.++|++++++++ .+.+.+...+++          |                         +.|
T Consensus       241 ~d~~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~~~~~~~~----------~-------------------------~~~  282 (395)
T 3nx3_A          241 PDIMTSA--KALGC-GLSVGAFVINQKVASNSLEAGDHGST----------Y-------------------------GGN  282 (395)
T ss_dssp             CSEEEEC--GGGTT-TSCCEEEEECHHHHHHHSCTTCCSSC----------B-------------------------SCC
T ss_pred             CCEEEec--ccccC-CCceEEEEEchhhhhhhcCCcccCCC----------C-------------------------CCC
Confidence            8998877  87774 5579999999887 555654322211          0                         012


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ..+.++..                                        ++++.+..   +...++.+.+.+++.+.|.++
T Consensus       283 ~~~~~aa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~~~~~l~~~  319 (395)
T 3nx3_A          283 PLVCAGVN----------------------------------------AVFEIFKE---EKILENVNKLTPYLEQSLDEL  319 (395)
T ss_dssp             HHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------------------------------------HHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence            22222111                                        45655433   234455566666666666543


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      ..    ..|.+...     ...+.++.|.+.+..    ....+.+.+.++||.++.|.                      
T Consensus       320 ~~----~~~~~~~~-----~~~g~~~~~~~~~~~----~~~~~~~~l~~~Gi~v~~~~----------------------  364 (395)
T 3nx3_A          320 IN----EFDFCKKR-----KGLGFMQGLSLDKSV----KVAKVIQKCQENALLLISCG----------------------  364 (395)
T ss_dssp             HH----HCTTEEEE-----EEETTEEEEEECTTS----CHHHHHHHHHHTTEECEEET----------------------
T ss_pred             HH----hCCCeEEE-----EeEEEEEEEEeCCcc----hHHHHHHHHHHCCCEEecCC----------------------
Confidence            10    01223221     124678888887631    23344444556798877430                      


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                        .+.||+|+++..|.||++++++.|++++.
T Consensus       365 ------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  393 (395)
T 3nx3_A          365 ------------------ENDLRFLPPLILQKEHIDEMSEKLRKALK  393 (395)
T ss_dssp             ------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                              25899999999999999999999999875

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.60  E-value=7.5e-14  Score=149.85  Aligned_cols=308  Identities=13%  Similarity=0.084  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccC-chH--------------------HHHHHHHHHcCCEEEEEeccCCccccCHH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYES-EAV--------------------EAMIRTSEKRGARVMSAEFSWPRLRINSE  228 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es-~sV--------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~  228 (603)
                      ..+.+.|++|++++|++  +++++... +++                    ......++..|++++.+++++.++.++.+
T Consensus        52 ~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~  129 (424)
T 2po3_A           52 PLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPD  129 (424)
T ss_dssp             HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHH
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHH
Confidence            45678999999999873  66554221 111                    11223455679999999987546788999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc--
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY--  305 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h--  305 (603)
                      +|++.|..      ++++|.+.   |.||...+++.+ ++|+++|+++++|+++..+.....-.+..+ +|++++|++  
T Consensus       130 ~l~~~i~~------~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~sk~  199 (424)
T 2po3_A          130 QVAAAVTP------RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSFHAT  199 (424)
T ss_dssp             HHGGGCCT------TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTT
T ss_pred             HHHHhhCc------CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeCCCC
Confidence            99888753      57888874   589999999855 589999999999999886541000112222 699999998  


Q ss_pred             ccCCCCCCceEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC-Chhhhhhhh
Q 007454          306 QIFGENPSGFGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN-TFSGPMSIE  383 (603)
Q Consensus       306 K~fG~~P~G~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~-n~~gi~gl~  383 (603)
                      |+++  |...|+++.+ +++++.+.+....|...      . +.        .       .    ..|+. .+..+.+ +
T Consensus       200 K~l~--~~~~G~~v~~~~~l~~~l~~~~~~~~~~------~-~~--------~-------~----~~g~~~~~~~~~a-a  250 (424)
T 2po3_A          200 KAVN--AFEGGAVVTDDADLAARIRALHNFGFDL------P-GG--------S-------P----AGGTNAKMSEAAA-A  250 (424)
T ss_dssp             SSSC--CSSCEEEEESCHHHHHHHHHHHBTTTTC------T-TC--------C-------T----TCCCBCCCCHHHH-H
T ss_pred             CCcc--CCCCeEEEeCCHHHHHHHHHHHhcCccc------c-cc--------c-------c----ccCcCCCcCHHHH-H
Confidence            7887  5356777776 45544444321111100      0 00        0       0    01111 1111111 0


Q ss_pred             hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 007454          384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN  463 (603)
Q Consensus       384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~  463 (603)
                                                              .++..++  +++.+.++.+.+.++|.+.|.+++       
T Consensus       251 ----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~-------  281 (424)
T 2po3_A          251 ----------------------------------------MGLTSLD--AFPEVIDRNRRNHAAYREHLADLP-------  281 (424)
T ss_dssp             ----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCT-------
T ss_pred             ----------------------------------------HHHHHHH--HHHHHHHHHHHHHHHHHHHhccCC-------
Confidence                                                    2222222  366778888899999999987652       


Q ss_pred             ceEEEeC-CCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454          464 ALVKIYG-PKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS  542 (603)
Q Consensus       464 plv~Iyg-p~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (603)
                       .+++++ |........++.|.+++... -++...+.+.+.++||.++.  .|.+......      .+...+   .. .
T Consensus       282 -g~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~------~~~~~g---~~-~  347 (424)
T 2po3_A          282 -GVLVADHDRHGLNNHQYVIVEIDEATT-GIHRDLVMEVLKAEGVHTRA--YFSPGCHELE------PYRGQP---HA-P  347 (424)
T ss_dssp             -TEEECCGGGGSCCCCCCEEEEECHHHH-SSCHHHHHHHHHHTTEECBC--TTCSCGGGST------TTTTSC---CC-C
T ss_pred             -CccccCCCCCCccccEEEEEEECCccc-hhhHHHHHHHHHHCCCceec--ccCCccccch------hhhhcC---CC-C
Confidence             277776 32111113677788863100 02344566666778999987  3432111000      000000   00 0


Q ss_pred             ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      ..+.   .......||++++.++|.+||+++++.|+++++..
T Consensus       348 ~~~~---~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~  386 (424)
T 2po3_A          348 LPHT---ERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRG  386 (424)
T ss_dssp             CHHH---HHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ChhH---HHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            0000   00011368999999999999999999999988653

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.59  E-value=8.6e-14  Score=151.32  Aligned_cols=284  Identities=14%  Similarity=0.153  Sum_probs=179.8

Q ss_pred             HHHHHHHHHHc----CC-CCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCCcccc
Q 007454          173 SAMKKRIMDFL----NI-SENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       173 ~~aR~~Ia~~l----na-~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      .+.|+.|++++    |+ ++++++++..+ ++                     .......++..|+++..++.+. ++ +
T Consensus       121 ~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~g-~  198 (448)
T 3aow_A          121 TPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-EG-M  198 (448)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE-E
T ss_pred             HHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-CC-C
Confidence            47888888888    98 67888776432 12                     2223344566788998888874 44 8


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEE-EEeCccccccccccHH----HHHHHHhCCcEEEEeccccCC----CCCCCC-CCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLF-VFPLHSRMTGARYPYL----WMRIAQENDWHILIDACALGP----KDMDSF-GLSLV  295 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv-~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vlvDAaq~~~----~~m~~l-dls~~  295 (603)
                      +.++|++.|.......++++++ ++|..+|.||.++|.+    ++++|+++|+++++|.++...    ....++ ++...
T Consensus       199 d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~  278 (448)
T 3aow_A          199 KVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNE  278 (448)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTT
T ss_pred             CHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCC
Confidence            9999999986100001257876 7899999999999975    335789999999999987653    200011 22233


Q ss_pred             CCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          296 RPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      +.++++.|+.|+||  | |  +|++++++++++.+....            +                   .   . ..+
T Consensus       279 ~~vi~~~S~SK~~~--~-GlriG~v~~~~~l~~~l~~~~------------~-------------------~---~-~~~  320 (448)
T 3aow_A          279 GRVIYLGTFSKILA--P-GFRIGWMVGDPGIIRKMEIAK------------Q-------------------S---T-DLC  320 (448)
T ss_dssp             SCEEEEEESTTTTC--G-GGCCEEEEECHHHHHHHHHHH------------H-------------------H---H-HSS
T ss_pred             CCEEEEccchhhcc--c-cccEEEEEeCHHHHHHHHHHH------------H-------------------H---h-cCC
Confidence            56899999999999  4 7  799999876654333100            0                   0   0 111


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHH
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD-SLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~-~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      .|.....++.                                        ++|+... .-.+..+.++.+..+++|.+.|
T Consensus       321 ~~~~~q~a~~----------------------------------------~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L  360 (448)
T 3aow_A          321 TNVFGQVVAW----------------------------------------RYVDGGYLEKHIPEIRKFYKPRRDAMLEAL  360 (448)
T ss_dssp             CCHHHHHHHH----------------------------------------HHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHH----------------------------------------HHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2322222211                                        2232100 0024566777778888999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      .+.- |.     .++++.|.    .+..+.+.+++.    ++.. ++++|.+ +||.++.|..|...             
T Consensus       361 ~~~~-~~-----g~~~~~p~----~g~~~~v~~~~~----~~~~~l~~~l~~-~gV~v~pg~~f~~~-------------  412 (448)
T 3aow_A          361 EEFM-PE-----GVKWTKPE----GGMFIWVTLPDG----IDSKKMLERAIK-KGVAYVPGEAFYAH-------------  412 (448)
T ss_dssp             HHHC-CT-----TCEECCCS----BSSEEEEECSTT----CCHHHHHHHHHH-TTEECEEGGGGSTT-------------
T ss_pred             HHhC-CC-----CeEEeCCC----ccEEEEEEcCCC----CCHHHHHHHHHH-CCcEEEcchhhcCC-------------
Confidence            7631 10     25555542    366777777641    2333 4555554 59999988766431             


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                                         ....+.+|+|++.. +.|||+++++.|++++.+.
T Consensus       413 -------------------~~~~~~iRls~~~~-~~e~i~~~~~~L~~~l~~~  445 (448)
T 3aow_A          413 -------------------RDVKNTMRLNFTYV-DEDKIMEGIKRLAETIKEE  445 (448)
T ss_dssp             -------------------CCCCSEEEEECSSS-CTHHHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCCEEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence                               01236899999984 8999999999999988654

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.59  E-value=2.3e-14  Score=152.50  Aligned_cols=284  Identities=13%  Similarity=0.121  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHc------CCCCCcEEEeccC-chHHHHHHHHHHcCC-----EEEEE-eccCC-----------------
Q 007454          172 ESAMKKRIMDFL------NISENDYVYDYES-EAVEAMIRTSEKRGA-----RVMSA-EFSWP-----------------  221 (603)
Q Consensus       172 ~~~aR~~Ia~~l------na~~~e~vf~~es-~sV~~~~~~a~~~Ga-----~V~~~-~~~~~-----------------  221 (603)
                      +.+.|+.|++++      ++++++++++... +++..++..+.+.|.     +|... ...|+                 
T Consensus        77 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~  156 (417)
T 3g7q_A           77 KTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARP  156 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccC
Confidence            457899999998      6888999988654 355555555555553     55432 11110                 


Q ss_pred             ----------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCC-
Q 007454          222 ----------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKD-  286 (603)
Q Consensus       222 ----------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~-  286 (603)
                                +..++.++|+  +      ++++++++++..+|.||.++|   ++.+ ++|+++|+++++|.++..+.. 
T Consensus       157 ~~~~~~~~~~~~~~d~~~l~--~------~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~  228 (417)
T 3g7q_A          157 NIELLPEGQFKYHVDFEHLH--I------GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPG  228 (417)
T ss_dssp             EEEEEGGGEEEEECCGGGCC--C------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTC
T ss_pred             cccccCCcccccccCHHHhc--c------ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccc
Confidence                      1124555554  2      246899999999999999999   4433 468999999999998764220 


Q ss_pred             --CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcc
Q 007454          287 --MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSK  364 (603)
Q Consensus       287 --m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~  364 (603)
                        ...+.....+.++++.|++|+ +.+..++|+++.++++++.+....            .                   
T Consensus       229 ~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~------------~-------------------  276 (417)
T 3g7q_A          229 IIFSEARPLWNPNIILCMSLSKL-GLPGSRCGIIIANDKTITAIANMN------------G-------------------  276 (417)
T ss_dssp             CBCSCCCCCCCTTEEEEEESGGG-TCTTSCCEEEECCHHHHHHHHHHH------------H-------------------
T ss_pred             ccccccccCCCCCEEEEEechhc-cCCCcceEEEEeCHHHHHHHHHhh------------c-------------------
Confidence              011222234678999999994 632233888777655543332100            0                   


Q ss_pred             cccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH-----HHHH
Q 007454          365 SKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT-----MISR  439 (603)
Q Consensus       365 ~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~-----~i~~  439 (603)
                          .-..+.+..+..+                                           +...++...+.     .+.+
T Consensus       277 ----~~~~~~~~~~~~~-------------------------------------------~~~~l~~~~~~~~~~~~~~~  309 (417)
T 3g7q_A          277 ----IISLAPGGMGPAM-------------------------------------------MCEMIKRNDLLRLSETVIKP  309 (417)
T ss_dssp             ----HHCCCCCSHHHHH-------------------------------------------HHHHHHTTCHHHHHHHTHHH
T ss_pred             ----ceeeCCCcHHHHH-------------------------------------------HHHHHcCcchHHHHHHHHHH
Confidence                0011112222111                                           12222222221     1444


Q ss_pred             HHHHHHHHHHHHHhc-CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454          440 RGRCLINWLVNALMK-LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW  518 (603)
Q Consensus       440 r~~~L~~~L~~~L~~-L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~  518 (603)
                      +.+...+.+.+.|.+ ++.     . .++++.|.    .+..+.+.+++..   ++...+.+.+.++||.++.|..|..+
T Consensus       310 ~~~~~~~~~~~~l~~~l~~-----~-~~~~~~~~----~g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~  376 (417)
T 3g7q_A          310 FYYQRVQQTIAIIRRYLSE-----E-RCLIHKPE----GAIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPG  376 (417)
T ss_dssp             HHHHHHHHHHHHHHHHCCT-----T-TCEEECCC----BSSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTT
T ss_pred             HHHHHHHHHHHHHHHhccc-----C-CceeeCCC----cceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCC
Confidence            556666677777765 321     1 15666653    4667777776421   34455555567889999999988654


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .....                           ....+.||+|++.  +.+||+++++.|++++.+.
T Consensus       377 ~~~~~---------------------------~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~  413 (417)
T 3g7q_A          377 LDKPW---------------------------PHTHQCMRMNYVP--EPDKIEAGVKILAEEIERA  413 (417)
T ss_dssp             BSSCC---------------------------GGGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred             Ccccc---------------------------ccCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence            22110                           0113699999996  9999999999999988754

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.59  E-value=3.3e-14  Score=149.16  Aligned_cols=268  Identities=11%  Similarity=0.045  Sum_probs=167.0

Q ss_pred             HHHHHHHHHc----CC--CCCcEEEeccC-chHHHH-----------------------HHHHHHcCCEEEEEeccCCcc
Q 007454          174 AMKKRIMDFL----NI--SENDYVYDYES-EAVEAM-----------------------IRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       174 ~aR~~Ia~~l----na--~~~e~vf~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      +.|+.|++++    |+  ++++++++... +++..+                       ...++..|+++..+++++ ..
T Consensus        63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~-~~  141 (376)
T 3ezs_A           63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTK-EN  141 (376)
T ss_dssp             HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCG-GG
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCC-CC
Confidence            5666666665    77  77888876433 222222                       233445566677777653 22


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCC-CCCCCCC-----
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKD-MDSFGLS-----  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~-m~~ldls-----  293 (603)
                      .++. +|++.+..      +++++.++..+|.||.++|.+.+    ++|+++|+++++|.++..... -.+..+.     
T Consensus       142 ~~~~-~l~~~~~~------~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~  214 (376)
T 3ezs_A          142 DFTP-SLNEKELQ------EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACML  214 (376)
T ss_dssp             TSCC-CCCHHHHH------HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHH
T ss_pred             Ccch-hHHhhhcc------CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHcccc
Confidence            2333 56666653      47888888899999999997633    358899999999998765210 0012211     


Q ss_pred             ----CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccccccc
Q 007454          294 ----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEK  369 (603)
Q Consensus       294 ----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  369 (603)
                          ..+.++++.|++|.||.+..++|+++.++++++.+....                                .   .
T Consensus       215 ~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--------------------------------~---~  259 (376)
T 3ezs_A          215 AGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSRLLEKYKAFR--------------------------------A---Y  259 (376)
T ss_dssp             TTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHH--------------------------------T---T
T ss_pred             ccccccCcEEEEecchhccCCccceeEEEeeCHHHHHHHHHHH--------------------------------h---h
Confidence                457789999999999832223788887665543332100                                0   0


Q ss_pred             ccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 007454          370 VAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLV  449 (603)
Q Consensus       370 e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~  449 (603)
                      ...+.|..+..++.                                        ++++..+  .++...++.+.+.+++.
T Consensus       260 ~~~~~~~~~~~a~~----------------------------------------~~l~~~~--~~~~~~~~~~~~~~~l~  297 (376)
T 3ezs_A          260 LGYTSANAIQKASE----------------------------------------AAWLDDR--HAEFFRNIYANNLKLAR  297 (376)
T ss_dssp             TCCCCCHHHHHHHH----------------------------------------HHHHCSH--HHHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHH----------------------------------------HHHhCcH--HHHHHHHHHHHHHHHHH
Confidence            12334444443332                                        2443211  25677777888888888


Q ss_pred             HHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          450 NALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       450 ~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      +.|..           +.  .|    ..+..+.+.++  +    ..+++++|.+++||.++.|..|...           
T Consensus       298 ~~l~~-----------~~--~~----~~~~~~~~~~~--~----~~~~~~~l~~~~gi~v~~g~~~~~~-----------  343 (376)
T 3ezs_A          298 KIFKN-----------TL--IY----PYSFYVYLPVQ--N----GENFAKTLYQNEGIITLPALYLGRN-----------  343 (376)
T ss_dssp             HHSTT-----------CC--CC----SBSSEEEEECS--C----HHHHHHHHHHHHCCBCEEGGGGCST-----------
T ss_pred             HHhcC-----------CC--CC----CcceEEEEECC--C----HHHHHHHHHHhCCEEEeCcHHhCCC-----------
Confidence            87751           11  11    34667777765  1    1234566666589999999877531           


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                           ....+.||+|++.  |.+||+++++.|++++++
T Consensus       344 ---------------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~  374 (376)
T 3ezs_A          344 ---------------------RIGADYVRLALVY--DTPLLEKPLEIIETYREN  374 (376)
T ss_dssp             ---------------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred             ---------------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence                                 1123699999984  999999999999988753

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.59  E-value=1.5e-13  Score=148.65  Aligned_cols=328  Identities=11%  Similarity=0.079  Sum_probs=191.6

Q ss_pred             CCceeeecCC---CCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc
Q 007454          107 SNHTCLDYFG---IGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL  183 (603)
Q Consensus       107 ~~~vYLDyaa---~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l  183 (603)
                      .+..|||+.+   ..++++.+++++.....        .|            .+           .....+.|++|++++
T Consensus        40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~~~--------~y------------~~-----------~~~~~~l~~~la~~~   88 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAMSDKQWAGMMMGDE--------AY------------AG-----------SENFYHLERTVQELF   88 (456)
T ss_dssp             GGGCSEECSCSSSCCCCCHHHHHHHTTCCC--------CS------------SS-----------CHHHHHHHHHHHHHH
T ss_pred             cccceeeeccccCCccCCHHHHHHhhcchh--------hc------------cc-----------ChhHHHHHHHHHHHh
Confidence            4578999854   34678889988752100        00            10           123456788888888


Q ss_pred             CCCCCcEEEecc-CchH--------------------HHHHHHHHHcCCEEEEEeccC----C-----ccccCHHHHHHH
Q 007454          184 NISENDYVYDYE-SEAV--------------------EAMIRTSEKRGARVMSAEFSW----P-----RLRINSEKLRKM  233 (603)
Q Consensus       184 na~~~e~vf~~e-s~sV--------------------~~~~~~a~~~Ga~V~~~~~~~----~-----~g~i~~~~L~~~  233 (603)
                      |.+  +++++.. ++++                    ......++..|+++..++++.    .     ++.++.++|+++
T Consensus        89 ~~~--~~~~~~~gt~a~~~al~~l~~~gdi~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~  166 (456)
T 2ez2_A           89 GFK--HIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKL  166 (456)
T ss_dssp             CCS--EEEEESSHHHHHHHHHHHHCCTTCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHH
T ss_pred             CCC--cEEEeCCcHHHHHHHHHHhCCCCCEeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHH
Confidence            764  4544321 0111                    112344566799999888761    1     257899999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccc-ccccccc---HHHH-HHHHhCCcEEEEeccccCC---------CCCCCCCCC------
Q 007454          234 VVSKGKKKKQRGLFVFPLHSR-MTGARYP---YLWM-RIAQENDWHILIDACALGP---------KDMDSFGLS------  293 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn-~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~---------~~m~~ldls------  293 (603)
                      |..+.  +..+++|.+...+| .||..+|   ++.| ++|+++|+++++|.++..|         .......+.      
T Consensus       167 i~~~t--~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~  244 (456)
T 2ez2_A          167 IDEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM  244 (456)
T ss_dssp             HHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH
T ss_pred             HHhcc--ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh
Confidence            97521  02358888887777 9999998   6644 5789999999999998763         100112110      


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEe-CCCCcCcCCCC--CCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVK-KSTVPILVDNT--SSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vk-k~~~~~L~p~~--~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      ...+|++++|+||++|. | ..|+++.+ +++++.+....  ..|.                                ..
T Consensus       245 ~~~~d~~~~S~kk~~~~-~-~gG~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~  290 (456)
T 2ez2_A          245 FSYADGCTMSGKKDCLV-N-IGGFLCMNDDEMFSSAKELVVVYEGM--------------------------------PS  290 (456)
T ss_dssp             HTTCSEEEEETTTTTCC-S-SCEEEEESCHHHHHHHHHHHHHHTCC--------------------------------TT
T ss_pred             cccCCEEEEeCcccCCC-C-ceeEEEECCHHHHHHHHHHHhhccCc--------------------------------cc
Confidence            12479999999999883 4 36777774 44443332110  0010                                00


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                      .+..+...+.++                                          ++...+.++ +...++.+.+.++|.+
T Consensus       291 ~~~~~~~~~~a~------------------------------------------a~~~~~~~~-~~~~~~~~~~~~~l~~  327 (456)
T 2ez2_A          291 YGGLAGRDMEAM------------------------------------------AIGLREAMQ-YEYIEHRVKQVRYLGD  327 (456)
T ss_dssp             TTTCCHHHHHHH------------------------------------------HHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred             ccCcchhHHHHH------------------------------------------HHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence            111122222111                                          222223333 4555666788889999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEc----cCCCCcc-CHHHHHHHHhcCCcEE-eeCcccCccCCchhh
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVF----DWKREKI-EPVLVQKLADRENISL-SYGSLHHIWFSDKYQ  524 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~----~~~g~~v-~~~~V~~Lad~~gI~l-r~G~~C~~~~~~~~~  524 (603)
                      .|.++      |   +.++.|    ..+..+.+.+.    +.+.+.+ ...+..+|+.++||.+ ..|.+|...  .+. 
T Consensus       328 ~L~~~------g---~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~-  391 (456)
T 2ez2_A          328 KLKAA------G---VPIVEP----VGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNV-  391 (456)
T ss_dssp             HHHHT------T---CCBCSS----CCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTT-
T ss_pred             HHhcC------C---CccccC----CCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccc-
Confidence            99874      2   233344    24667777763    3333333 2222444546789985 457666331  111 


Q ss_pred             hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCC-CCHHHHHHHHHHHHHHHhh
Q 007454          525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYL-ANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~-tt~eDVd~l~~~l~~~l~~  583 (603)
                          .        +.    .     .....+.||+|++.. +|.+||+++++.|+++++.
T Consensus       392 ----~--------g~----~-----~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~  430 (456)
T 2ez2_A          392 ----T--------GE----H-----HRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH  430 (456)
T ss_dssp             ----T--------CS----B-----CCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ----c--------cc----c-----ccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence                0        00    0     011236899999998 8999999999999999876

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.58  E-value=5.8e-14  Score=147.42  Aligned_cols=272  Identities=15%  Similarity=0.088  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHc-CCCCCcEEEeccC-ch---------------------HHHHHHHHHHcCCEEEEEeccCC-ccccCHH
Q 007454          173 SAMKKRIMDFL-NISENDYVYDYES-EA---------------------VEAMIRTSEKRGARVMSAEFSWP-RLRINSE  228 (603)
Q Consensus       173 ~~aR~~Ia~~l-na~~~e~vf~~es-~s---------------------V~~~~~~a~~~Ga~V~~~~~~~~-~g~i~~~  228 (603)
                      .+.|++|++++ ++++++++++... ++                     .......++..|+++..+++++. +..++.+
T Consensus        66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~  145 (375)
T 3op7_A           66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLE  145 (375)
T ss_dssp             HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTEECHH
T ss_pred             HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCCCCHH
Confidence            36888888888 5677787664321 11                     11223445677999999888643 2347999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEeccccCCCCCCCC--CCCCCCCcEEEE
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDACALGPKDMDSF--GLSLVRPDFLIC  302 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDAaq~~~~~m~~l--dls~~~~Dflv~  302 (603)
                      +|+++|..      +++++.++..+|.||..+|   ++.+ ++|+++|+++++|.++..... .++  -.+..+.++++.
T Consensus       146 ~l~~~l~~------~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~i~~~  218 (375)
T 3op7_A          146 KLRQLIRP------TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSE-LDVPSIIEVYDKGIAVN  218 (375)
T ss_dssp             HHHHHCCT------TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSS-SCCCCHHHHCTTEEEEE
T ss_pred             HHHHhhcc------CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-cCCCchhhhcCCEEEEe
Confidence            99999863      6889999999999999999   7644 579999999999998665321 111  112345678999


Q ss_pred             cccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          303 SFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      |++|.||  +.|  +|++++++++++.+.....                                   .-..+.+....+
T Consensus       219 s~sK~~~--~~G~r~G~v~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~~~~~  261 (375)
T 3op7_A          219 SLSKTYS--LPGIRIGWVAANHQVTDILRDYRD-----------------------------------YTMICAGVFDDL  261 (375)
T ss_dssp             ESSSSSS--CGGGCCEEEECCHHHHHHHTTTGG-----------------------------------GTTSCCCHHHHH
T ss_pred             EChhhcC--CcccceEEEEeCHHHHHHHHHHHh-----------------------------------hhccCCCcHHHH
Confidence            9999998  346  5888886665544432100                                   001111222221


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                      ...                                        .+++..+. .+++..++.+...++|.+.|.+++    
T Consensus       262 ~~~----------------------------------------~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----  296 (375)
T 3op7_A          262 VAQ----------------------------------------LALAHYQE-ILERNRHILEENLAILDQWIEEEP----  296 (375)
T ss_dssp             HHH----------------------------------------HHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHCT----
T ss_pred             HHH----------------------------------------HHHhccHH-HHHHHHHHHHHHHHHHHHHHhhCC----
Confidence            111                                        34443322 255666677788888888888742    


Q ss_pred             CCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC-HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          461 EGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE-PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       461 ~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~-~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                          .+.++.|.    .+..+-+.++..    ++ .+++++++.++||.++.|..|..                      
T Consensus       297 ----~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~ll~~~gi~v~~g~~~~~----------------------  342 (375)
T 3op7_A          297 ----LVSYIRPA----VVSTSFVKIAVD----MPMEDFCLQLLQEHGVLLVPGNRFER----------------------  342 (375)
T ss_dssp             ----TEEECCCS----SSSCEEEEECCS----SCHHHHHHHHHHHHCEECEEGGGGTC----------------------
T ss_pred             ----CceEecCC----CeEEEeEEcCCC----CCHHHHHHHHHHhCCEEEeChhhhCC----------------------
Confidence                26665543    233444444421    22 34456677788999987754321                      


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    .+.+|+|++...  +||+++++.|++++++
T Consensus       343 --------------~~~iRi~~~~~~--~~i~~~l~~l~~~l~~  370 (375)
T 3op7_A          343 --------------DGYVRLGFACEQ--ETLIKGLEKLSQFLRR  370 (375)
T ss_dssp             --------------TTEEEECCCSCH--HHHHHHHHHHHHHHGG
T ss_pred             --------------CCeEEEEecCCH--HHHHHHHHHHHHHHHH
Confidence                          258999988644  9999999999998865

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.58  E-value=4.9e-13  Score=143.55  Aligned_cols=307  Identities=10%  Similarity=0.077  Sum_probs=189.9

Q ss_pred             CCceeeecCCCC---CC----CHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG---LF----SYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI  179 (603)
Q Consensus       107 ~~~vYLDyaa~t---l~----~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I  179 (603)
                      .+..|+|+++..   ++    ++.+++++.+.+...         .        ++++....       .....+.+++|
T Consensus        40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~---------~--------~~~~~~~~-------~~~~~~l~~~l   95 (419)
T 2eo5_A           40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKL---------A--------HAAANDFY-------NIPQLELAKKL   95 (419)
T ss_dssp             TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTS---------C--------CCSCSCSC-------CHHHHHHHHHH
T ss_pred             CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhC---------c--------cccccccC-------CHHHHHHHHHH
Confidence            457899997654   33    789999887654311         0        01111111       13345677899


Q ss_pred             HHHcCCC-CCcEEEecc-CchHHHHHHHHHH-cCCEEEEE-----------------------------------eccCC
Q 007454          180 MDFLNIS-ENDYVYDYE-SEAVEAMIRTSEK-RGARVMSA-----------------------------------EFSWP  221 (603)
Q Consensus       180 a~~lna~-~~e~vf~~e-s~sV~~~~~~a~~-~Ga~V~~~-----------------------------------~~~~~  221 (603)
                      ++++|++ +++++|+.. ++++...+..+.. .|.+|...                                   +++ .
T Consensus        96 a~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~  174 (419)
T 2eo5_A           96 VTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP-N  174 (419)
T ss_dssp             HHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC-C
T ss_pred             HHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC-c
Confidence            9999998 788888764 3455554444432 14444433                                   221 0


Q ss_pred             c-----cc-----------cCHHHHH-HHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEec
Q 007454          222 R-----LR-----------INSEKLR-KMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDA  279 (603)
Q Consensus       222 ~-----g~-----------i~~~~L~-~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDA  279 (603)
                      .     +.           ++.++|+ +.|... ...+++++|.+...+|.||.+.|    ++.+ ++|+++|+++++|.
T Consensus       175 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE  253 (419)
T 2eo5_A          175 PYRNPWHINGYENPSELVNRVIEFIEDYIFVNL-VPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDE  253 (419)
T ss_dssp             SSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHT-CCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred             cccccccccccccchhhHHHHHHHHHHHHHhhc-cCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEec
Confidence            0     10           3467888 888631 00125788888888889999887    8755 57899999999999


Q ss_pred             ccc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCC
Q 007454          280 CAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC  355 (603)
Q Consensus       280 aq~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~  355 (603)
                      ++. .+..  +..++.....+|++++|  |.||. + .++|+++++++++ .+ ....++                    
T Consensus       254 ~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~~~~-G~~riG~~~~~~~~~-~~-~~~~~~--------------------  308 (419)
T 2eo5_A          254 VQMGLGRTGKLFAIENFNTVPDVITLA--KALGG-GIMPIGATIFRKDLD-FK-PGMHSN--------------------  308 (419)
T ss_dssp             TTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TTSCCEEEEEEGGGC-CC---------------------------
T ss_pred             cccCCccCcchhhHHhcCCCCCEEEec--ccccC-CccceEEEEEchHhh-cC-CcccCC--------------------
Confidence            986 3331  11233334578988666  98884 4 6789999998865 44 211000                    


Q ss_pred             CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454          356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT  435 (603)
Q Consensus       356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~  435 (603)
                                     .-+.|..++++..                                        ++++.+++    
T Consensus       309 ---------------t~~~n~~~~~aa~----------------------------------------aal~~~~~----  329 (419)
T 2eo5_A          309 ---------------TFGGNALACAIGS----------------------------------------KVIDIVKD----  329 (419)
T ss_dssp             ---------------CCCCCHHHHHHHH----------------------------------------HHHHHHHH----
T ss_pred             ---------------CCCCCHHHHHHHH----------------------------------------HHHHHHHH----
Confidence                           0012333333322                                        46665443    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCccc
Q 007454          436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLH  515 (603)
Q Consensus       436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C  515 (603)
                       +.++++.++++|.+.|.++ -      ..++        ..+.++.|.+.. ++. . ..+..+|. ++||.++.+   
T Consensus       330 -~~~~~~~~~~~l~~~L~~~-~------~~~~--------~~g~~~~i~~~~-~~~-~-~~~~~~l~-~~Gv~v~~~---  386 (419)
T 2eo5_A          330 -LLPHVNEIGKIFAEELQGL-A------DDVR--------GIGLAWGLEYNE-KKV-R-DRIIGESF-KRGLLLLPA---  386 (419)
T ss_dssp             -HHHHHHHHHHHHHHHHTTS-S------SEEE--------EETTEEEEECSC-HHH-H-HHHHHHHH-HTTEECEEE---
T ss_pred             -HHHHHHHHHHHHHHHHHHh-h------hheE--------eeeEEEEEEEec-Ccc-H-HHHHHHHH-HCCCEEecC---
Confidence             6788899999999999765 1      1121        246677777631 001 1 22344444 689988743   


Q ss_pred             CccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          516 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                        +   .+.||+|+++.+|.+|++++++.|++++..
T Consensus       387 ----------------------------------~---~~~lRis~~~~~t~e~i~~~l~~l~~~l~~  417 (419)
T 2eo5_A          387 ----------------------------------G---RSAIRVIPPLVISEEEAKQGLDILKKVIKV  417 (419)
T ss_dssp             ----------------------------------T---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------C---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                                              0   258999999999999999999999988753

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.57  E-value=3.1e-13  Score=145.19  Aligned_cols=255  Identities=15%  Similarity=0.094  Sum_probs=162.3

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC------CCCCCeeEEEE-eCccccccccccHH---HH-HHHHhC
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG------KKKKQRGLFVF-PLHSRMTGARYPYL---WM-RIAQEN  271 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~------~~~~~t~Lv~~-~~~Sn~TG~~~pl~---~i-~~a~e~  271 (603)
                      ...++..|+++..++.+. ++ ++.++|++.|...+      ...++++++.+ |..+|.||.++|.+   .+ ++|+++
T Consensus       146 ~~~~~~~g~~~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~  223 (425)
T 2r2n_A          146 LQSLHPLGCNIINVASDE-SG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY  223 (425)
T ss_dssp             HHHHGGGTCEEEEECEET-TE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCEEEEeCcCC-CC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc
Confidence            344556788888888763 33 89999999986311      00135677755 89999999999986   33 468999


Q ss_pred             CcEEEEecccc----CCCCCCCCCC---CCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCCcCcCCCCCCCceecccc
Q 007454          272 DWHILIDACAL----GPKDMDSFGL---SLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTVPILVDNTSSGMVSLLPA  342 (603)
Q Consensus       272 g~~vlvDAaq~----~~~~m~~ldl---s~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~~~L~p~~~gG~v~~~~~  342 (603)
                      |+++++|.++.    .++  ...++   ...+.++++.|++|+|| +  |  +|++++++++++.+....          
T Consensus       224 ~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~i~~~s~SK~~~-~--GlRiG~~~~~~~l~~~l~~~~----------  288 (425)
T 2r2n_A          224 DFLIIEDDPYYFLQFNKF--RVPTFLSMDVDGRVIRADSFSKIIS-S--GLRIGFLTGPKPLIERVILHI----------  288 (425)
T ss_dssp             TCEEEEECTTGGGBSSSS--CCCCTGGGCTTSCEEEEEESTTTTC-S--TTCCEEEEEEHHHHHHHHHHH----------
T ss_pred             CCEEEEECCcccccCCCC--CCCCccccCCCCCEEEEccchhhcc-C--ccceEEEecCHHHHHHHHHHH----------
Confidence            99999999875    233  12222   22345699999999998 3  6  799999876544333100          


Q ss_pred             ccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhH
Q 007454          343 KKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIE  422 (603)
Q Consensus       343 ~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (603)
                                            .   ...++.|..+..++.                                       
T Consensus       289 ----------------------~---~~~~~~~~~~q~a~~---------------------------------------  304 (425)
T 2r2n_A          289 ----------------------Q---VSTLHPSTFNQLMIS---------------------------------------  304 (425)
T ss_dssp             ----------------------H---TTTCSSCHHHHHHHH---------------------------------------
T ss_pred             ----------------------H---HhcCCCCHHHHHHHH---------------------------------------
Confidence                                  0   012233444333322                                       


Q ss_pred             HHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHH
Q 007454          423 CRGLDQVDS----LGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLV  498 (603)
Q Consensus       423 ~~ald~~~~----iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V  498 (603)
                       .+++....    -.+..+.++.+..+++|.+.|.++- +   |  ++.+..|    ..+..+.+.+++..   -..+.+
T Consensus       305 -~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~---~--~~~~~~p----~~g~~~~~~~~~~~---~~~~~~  370 (425)
T 2r2n_A          305 -QLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-T---G--LAEWHVP----AAGMFLWIKVKGIN---DVKELI  370 (425)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-S---S--SEEECCC----SBSSEEEEEETTCS---CCHHHH
T ss_pred             -HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-C---C--CeEEeCC----CceEEEEEEeCCCC---CHHHHH
Confidence             23332110    1245666777788888888887631 1   1  1344444    24667778886521   122334


Q ss_pred             HHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 007454          499 QKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVA  578 (603)
Q Consensus       499 ~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~  578 (603)
                      .+++.++||.++.|..|....                               ..+.+.||+|++. .+.+|++++++.|+
T Consensus       371 ~~~l~~~gv~v~pg~~f~~~~-------------------------------~~~~~~iRis~~~-~~~~~i~~~~~~l~  418 (425)
T 2r2n_A          371 EEKAVKMGVLMLPGNAFYVDS-------------------------------SAPSPYLRASFSS-ASPEQMDVAFQVLA  418 (425)
T ss_dssp             HTHHHHTTEECEEGGGGSSST-------------------------------TSCCCEEEEECSS-CCHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEechhhhcCCC-------------------------------CCCCCEEEEEeCC-CCHHHHHHHHHHHH
Confidence            566678999999887764310                               1123689999995 59999999999999


Q ss_pred             HHHhhh
Q 007454          579 QFLDAD  584 (603)
Q Consensus       579 ~~l~~~  584 (603)
                      +++.+.
T Consensus       419 ~~l~~~  424 (425)
T 2r2n_A          419 QLIKES  424 (425)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988653

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.56  E-value=1.5e-12  Score=140.77  Aligned_cols=310  Identities=9%  Similarity=0.058  Sum_probs=189.8

Q ss_pred             CCceeeecCC---CCC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFG---IGL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa---~tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||+++   ..+   .++.+++++.+.+...                    .+.+..  +   ......+.+++|+
T Consensus        63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la  117 (433)
T 1z7d_A           63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--------------------TICSRA--F---FSVPLGICERYLT  117 (433)
T ss_dssp             TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC--------------------SCCCTT--S---EEHHHHHHHHHHH
T ss_pred             CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhC--------------------CCccCC--c---CCHHHHHHHHHHH
Confidence            5678999876   222   5788888877643211                    111111  1   1245567888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH---------cC-CEEEEEeccCC---------cc-------------c---
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK---------RG-ARVMSAEFSWP---------RL-------------R---  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~---------~G-a~V~~~~~~~~---------~g-------------~---  224 (603)
                      +++|  .++++|... ++++...+..+++         .| .+|...+..+.         .+             .   
T Consensus       118 ~~~g--~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~  195 (433)
T 1z7d_A          118 NLLG--YDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSK  195 (433)
T ss_dssp             HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEE
T ss_pred             hhcC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEE
Confidence            9987  466766643 3466555555542         24 56655432110         00             1   


Q ss_pred             ---cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc----cHHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCC
Q 007454          225 ---INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYLWM-RIAQENDWHILIDACALG-PKD--MDSFGLS  293 (603)
Q Consensus       225 ---i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~----pl~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls  293 (603)
                         .+.++|+++|..     +++++|.+...++.+|.+.    +++.+ ++|+++|+++++|.+|.+ +..  +..++..
T Consensus       196 ~~~~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~  270 (433)
T 1z7d_A          196 VPYDDLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHY  270 (433)
T ss_dssp             ECTTCHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             eCCCCHHHHHHHhCC-----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhc
Confidence               267888888842     3588888887788899876    67755 589999999999999862 221  0112222


Q ss_pred             CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      ...||+++  +.|.+|  + |   +|++++++++++.+.+...+++                                + 
T Consensus       271 ~~~~di~t--~sK~l~--~-G~~~~G~v~~~~~~~~~l~~~~~~~t--------------------------------~-  312 (433)
T 1z7d_A          271 NVKPDVIL--LGKALS--G-GHYPISAVLANDDIMLVIKPGEHGST--------------------------------Y-  312 (433)
T ss_dssp             TCCCSEEE--ECGGGG--T-TSSCCEEEEECHHHHTTCCTTCCCCT--------------------------------T-
T ss_pred             CCCCCEEE--ECcccc--C-CCCCeEEEEECHHHHhhhcccccccc--------------------------------C-
Confidence            34699885  559998  3 6   9999999877655543111110                                0 


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                        +.|..+.++..                                        ++++.+++   +.+.++++.+.++|.+
T Consensus       313 --~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~  347 (433)
T 1z7d_A          313 --GGNPLAASICV----------------------------------------EALNVLIN---EKLCENAEKLGGPFLE  347 (433)
T ss_dssp             --TTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHH
Confidence              11222222211                                        46666554   2456788889999999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHH
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNV  530 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~  530 (603)
                      +|.++..    +.|.+...     ...|.++.|.+.+..   .....+.+.+.++||.++.+                  
T Consensus       348 ~L~~l~~----~~~~~~~~-----~~~g~~~~i~~~~~~---~~~~~~~~~l~~~Gv~v~~~------------------  397 (433)
T 1z7d_A          348 NLKRELK----DSKIVRDV-----RGKGLLCAIEFKNEL---VNVLDICLKLKENGLITRDV------------------  397 (433)
T ss_dssp             HHHHHHT----TCTTEEEE-----EEETTEEEEEECTTT---CCHHHHHHHHHHTTEECCEE------------------
T ss_pred             HHHHHHH----hCCCeEEE-----EeeeeEEEEEEccCh---hHHHHHHHHHHHCCeEEecC------------------
Confidence            9987621    12333211     125778888886531   12233433334579887632                  


Q ss_pred             HHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          531 LEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       531 l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                            +.+.||+++++..|.|||+++++.|+++++.
T Consensus       398 ----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  428 (433)
T 1z7d_A          398 ----------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF  428 (433)
T ss_dssp             ----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence                                  0148999999999999999999999998764

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.56  E-value=6.2e-13  Score=142.21  Aligned_cols=288  Identities=12%  Similarity=0.065  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hHH--HHHHHHH--------------------------------HcCCEEEEEe
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AVE--AMIRTSE--------------------------------KRGARVMSAE  217 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV~--~~~~~a~--------------------------------~~Ga~V~~~~  217 (603)
                      .+.|+.|++++++++++++++.... ++.  .++....                                ..|+++..++
T Consensus        73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~  152 (423)
T 3ez1_A           73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVD  152 (423)
T ss_dssp             HHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence            4799999999999999999876553 442  2333222                                2345555555


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHHHH---H-HH-HhCCcEEEEeccccCCC----C-
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYLWM---R-IA-QENDWHILIDACALGPK----D-  286 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~~i---~-~a-~e~g~~vlvDAaq~~~~----~-  286 (603)
                      .+. ++ ++.++|++.|..    .+++++|. .|..+|.||.++|.+.+   . +| +++|+++++|.++....    . 
T Consensus       153 ~~~-~g-~d~~~l~~~l~~----~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~  226 (423)
T 3ez1_A          153 MQS-DG-PDVDAVERLAGT----DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDR  226 (423)
T ss_dssp             EET-TE-ECHHHHHHHHHS----CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSC
T ss_pred             CCC-CC-CCHHHHHHHHhh----CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCC
Confidence            552 33 899999999952    13688885 57999999999999733   2 46 88999999999876311    0 


Q ss_pred             CCCCCC-------CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454          287 MDSFGL-------SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       287 m~~ldl-------s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                      ....++       ...+.++++.|++|+++ +..++|+++.++++++.+....            .              
T Consensus       227 ~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G~r~G~~~~~~~~~~~~~~~~------------~--------------  279 (423)
T 3ez1_A          227 AEPVNFVVLARDAGYPDRAFVFASTSKITF-AGAGLGFVASSEDNIRWLSKYL------------G--------------  279 (423)
T ss_dssp             CCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SSSSCEEEEECHHHHHHHHHHH------------H--------------
T ss_pred             CCCcchhhhhhccCCCCeEEEEeCchhhcc-CCcceEEEEeCHHHHHHHHHHH------------h--------------
Confidence            011122       13356799999999754 3567899988776544332100            0              


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISR  439 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~  439 (603)
                               ....+.+.....++.            ..+..     +               ...-.+++.+ -.+.+.+
T Consensus       280 ---------~~~~~~~~~~~~a~~------------~~l~~-----~---------------~~~~~~~~~~-~~~~~~~  317 (423)
T 3ez1_A          280 ---------AQSIGPNKVEQARHV------------KFLTE-----Y---------------PGGLEGLMRD-HAAIIAP  317 (423)
T ss_dssp             ---------HSCSCCCHHHHHHHH------------HHHHH-----S---------------TTHHHHHHHH-HHHHHHH
T ss_pred             ---------hhccCCCHHHHHHHH------------HHHHh-----c---------------cchHHHHHHH-HHHHHHH
Confidence                     001111222211111            00000     0               0000111111 1223334


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCc-eEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEee-CcccCc
Q 007454          440 RGRCLINWLVNALMKLQHPNTEGNA-LVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSY-GSLHHI  517 (603)
Q Consensus       440 r~~~L~~~L~~~L~~L~h~~~~g~p-lv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~-G~~C~~  517 (603)
                      +...|.+.|.+.|..+        + .++++.|.    .+..+.+.+++.     ....+.+++.++||.++. |.+|..
T Consensus       318 ~~~~l~~~l~~~l~~~--------~~~~~~~~p~----~g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~  380 (423)
T 3ez1_A          318 KFRAVDEVLRAELGEG--------GEYATWTLPK----GGYFISLDTAEP-----VADRVVKLAEAAGVSLTPAGATYPA  380 (423)
T ss_dssp             HHHHHHHHHHHHHTTT--------TSSEEECCCS----BSSCEEEEESSS-----CHHHHHHHHHHTTEECCCTTTTSST
T ss_pred             HHHHHHHHHHHhcCcC--------CCceEEeCCC----ccEEEEEECCCC-----cHHHHHHHHHHCCcEEecCcccccC
Confidence            4444555555555443        2 26666553    466788888753     245577777889999998 655532


Q ss_pred             cCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          518 WFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       518 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      +.                               ....+.||+|++.. +.+||+++++.|++++.+-
T Consensus       381 ~~-------------------------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~  415 (423)
T 3ez1_A          381 GQ-------------------------------DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA  415 (423)
T ss_dssp             TC-------------------------------CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CC-------------------------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence            10                               12236999999987 9999999999999998764

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.55  E-value=1.2e-13  Score=146.39  Aligned_cols=311  Identities=12%  Similarity=0.086  Sum_probs=190.1

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|++++.+      .++.+++++.+.+...        +.         ..   ..  +   ......+.+++++
T Consensus        37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~--------~~---------~~---~~--~---~~~~~~~l~~~la   91 (406)
T 4adb_A           37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKF--------WH---------TG---NG--Y---TNEPVLRLAKKLI   91 (406)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------SC---------CC---TT--S---CCHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhc--------cc---------cc---CC--c---CCHHHHHHHHHHH
Confidence            5678999988732      2788888877643211        00         00   00  0   1245678999999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cC-CEEEEEeccCCcc------------------------c---
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RG-ARVMSAEFSWPRL------------------------R---  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~G-a~V~~~~~~~~~g------------------------~---  224 (603)
                      +++|.+  +++|+.. ++++...+..+..       .| .+|......+...                        .   
T Consensus        92 ~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (406)
T 4adb_A           92 DATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAA  169 (406)
T ss_dssp             HHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEEC
T ss_pred             hhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeC
Confidence            999864  7777654 3455555555543       44 6666654332111                        1   


Q ss_pred             -cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-----cHHHH-HHHHhCCcEEEEecccc-CCCC--CCCCCCCC
Q 007454          225 -INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-----PYLWM-RIAQENDWHILIDACAL-GPKD--MDSFGLSL  294 (603)
Q Consensus       225 -i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-----pl~~i-~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~  294 (603)
                       .+.++|++.|.      +++++|.+. -+|.||.++     +++.+ ++|+++|+++++|.++. .+..  +..++...
T Consensus       170 ~~d~~~l~~~l~------~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~  242 (406)
T 4adb_A          170 YNDINSASALID------DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYG  242 (406)
T ss_dssp             TTCHHHHHTTCS------TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHT
T ss_pred             CCcHHHHHHHhc------CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcC
Confidence             36778877775      368898888 457777655     45544 47899999999999885 2210  01122223


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATN  374 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~  374 (603)
                      ..+|+++  ++|.|| +...+|++++++++++.+.+...+++                                   .+.
T Consensus       243 ~~~d~~t--~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~  284 (406)
T 4adb_A          243 VTPDLLT--TAKALG-GGFPVGALLATEECARVMTVGTHGTT-----------------------------------YGG  284 (406)
T ss_dssp             CCCSEEE--ECGGGG-TTSCCEEEEECHHHHHTCCTTSSCCS-----------------------------------STT
T ss_pred             CCCCEEE--echhhc-CCCCeEEEEEcHHHHhhhccCCcCCC-----------------------------------CCC
Confidence            4688885  599998 22349999998877655553211110                                   012


Q ss_pred             ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Q 007454          375 TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       375 n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      |..+..+..                                        ++++.++   .+.+.++.+.+.+++.+.|.+
T Consensus       285 ~~~~~~a~~----------------------------------------~~l~~~~---~~~~~~~~~~~~~~l~~~l~~  321 (406)
T 4adb_A          285 NPLASAVAG----------------------------------------KVLELIN---TPEMLNGVKQRHDWFVERLNT  321 (406)
T ss_dssp             CHHHHHHHH----------------------------------------HHHHHHS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH----------------------------------------HHHHHHH---hcCHHHHHHHHHHHHHHHHHH
Confidence            222222211                                        3555442   367788889999999999987


Q ss_pred             CCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhh
Q 007454          455 LQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       455 L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      +..    ..+.+.-.     ...+.++.|.+.+...  .....+.+.+.++||.++.+.                     
T Consensus       322 ~~~----~~~~~~~~-----~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~---------------------  369 (406)
T 4adb_A          322 INH----RYGLFSEV-----RGLGLLIGCVLNADYA--GQAKQISQEAAKAGVMVLIAG---------------------  369 (406)
T ss_dssp             HHH----HHCCEEEE-----EEETTEEEEEECTTTT--TCHHHHHHHHHHTTEECEESS---------------------
T ss_pred             HHH----hCCCceEE-----EEEEEEEEEEEeCCcH--HHHHHHHHHHHHCCcEEeecC---------------------
Confidence            521    00111100     1247789999876321  123334444445699887430                     


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                         .+.||+++++.+|.+||+++++.|++++.+
T Consensus       370 -------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~  399 (406)
T 4adb_A          370 -------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEH  399 (406)
T ss_dssp             -------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                               258999999999999999999999998865

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.55  E-value=6.1e-13  Score=142.78  Aligned_cols=147  Identities=12%  Similarity=0.114  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hH--HHHHHHHH---------------------------------HcCCEEEEE
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AV--EAMIRTSE---------------------------------KRGARVMSA  216 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV--~~~~~~a~---------------------------------~~Ga~V~~~  216 (603)
                      .+.|+.|++++++++++++++..+. ++  ..+.....                                 ..|+++..+
T Consensus        79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v  158 (422)
T 3d6k_A           79 ADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINV  158 (422)
T ss_dssp             HHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEec
Confidence            4799999999999999999876543 33  22223222                                 235556666


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHHHH----HHHH-hCCcEEEEeccccC----CC-
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYLWM----RIAQ-ENDWHILIDACALG----PK-  285 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~~i----~~a~-e~g~~vlvDAaq~~----~~-  285 (603)
                      +++. ++ ++.++|++.+..     .++++|. +|..+|.||.++|.+.+    ++|+ ++|++|++|.++..    .. 
T Consensus       159 ~~~~-~g-~d~~~l~~~l~~-----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~  231 (422)
T 3d6k_A          159 PMTD-EG-PDMGVVRELVKD-----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF  231 (422)
T ss_dssp             EEET-TE-ECHHHHHHHHTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred             CCCC-CC-CCHHHHHHHHhc-----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC
Confidence            6653 44 899999999863     2578777 79999999999999733    2456 89999999999852    11 


Q ss_pred             -CCCCC-C----CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCc
Q 007454          286 -DMDSF-G----LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL  328 (603)
Q Consensus       286 -~m~~l-d----ls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L  328 (603)
                       ...++ +    +...+.++++.|+.|+++  | ..+|++++++++++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--~GlriG~~~~~~~l~~~l  279 (422)
T 3d6k_A          232 PIVHNVIEFAQAAGNPNRFWFMSSTSKITH--AGSGVSFFASSKENIEWY  279 (422)
T ss_dssp             CCCCCHHHHHHHTTCTTCEEEEEESTTTSC--TTSSCEEEECCHHHHHHH
T ss_pred             CCCcChhhHhhccCCCCcEEEEcChhhhcC--cccceEEEEeCHHHHHHH
Confidence             00122 1    123457899999999844  5 2389999876654333

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.55  E-value=2.4e-12  Score=139.57  Aligned_cols=307  Identities=11%  Similarity=0.089  Sum_probs=190.2

Q ss_pred             CCceeeecCCC---CC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI---GL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~---tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|+++.   ..   .++.+++++.+.+...                    .+.+..  +   ......+.+++++
T Consensus        74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la  128 (439)
T 2oat_A           74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--------------------TLTSRA--F---YNNVLGEYEEYIT  128 (439)
T ss_dssp             TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTC--------------------SCCCTT--S---EESSHHHHHHHHH
T ss_pred             CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhc--------------------CcccCc--c---CCHHHHHHHHHHH
Confidence            56789998772   22   6788999877643211                    000000  0   1123457788899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH---------cC-CEEEEEeccCC---------cc-------------c---
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK---------RG-ARVMSAEFSWP---------RL-------------R---  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~---------~G-a~V~~~~~~~~---------~g-------------~---  224 (603)
                      +++|  .++++|... ++++...+..+++         .| .+|...+..+.         .+             .   
T Consensus       129 ~~~g--~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~  206 (439)
T 2oat_A          129 KLFN--YHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDI  206 (439)
T ss_dssp             HHHT--CSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEE
T ss_pred             HhcC--CCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEE
Confidence            9887  456666643 3456555555542         24 56766543221         01             1   


Q ss_pred             ---cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc----cHHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCC
Q 007454          225 ---INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY----PYLWM-RIAQENDWHILIDACALG-PKD--MDSFGLS  293 (603)
Q Consensus       225 ---i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~----pl~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls  293 (603)
                         .+.++|++.|..     +++++|.+...++.+|.+.    +++.+ ++|+++|+++++|.+|.+ +..  +..++..
T Consensus       207 ~~~~d~~~le~~l~~-----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~  281 (439)
T 2oat_A          207 IPYNDLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYE  281 (439)
T ss_dssp             ECSSCHHHHHHHTTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             eCCCCHHHHHHHhCC-----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHh
Confidence               267888888852     3578888877788899877    67755 589999999999999852 221  1112333


Q ss_pred             CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccc
Q 007454          294 LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKV  370 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e  370 (603)
                      ...||++  ++.|.+|  + |   +|++++++++++.+.+...+++                                + 
T Consensus       282 ~~~~Di~--t~sK~l~--~-G~~~~G~v~~~~~~~~~l~~~~~~~t--------------------------------~-  323 (439)
T 2oat_A          282 NVRPDIV--LLGKALS--G-GLYPVSAVLCDDDIMLTIKPGEHGST--------------------------------Y-  323 (439)
T ss_dssp             TCCCSEE--EECGGGG--T-TSSCCEEEEECHHHHTTSCTTSSCCS--------------------------------S-
T ss_pred             CCCCcEE--Eeccccc--C-CCCCeEEEEECHHHHhccCCCCcccC--------------------------------C-
Confidence            3468987  5569998  3 5   9999999877655543111100                                0 


Q ss_pred             cCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 007454          371 AATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVN  450 (603)
Q Consensus       371 ~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~  450 (603)
                        +.|..+.++..                                        ++++.+.+   +.+.++++.+.++|.+
T Consensus       324 --~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~  358 (439)
T 2oat_A          324 --GGNPLGCRVAI----------------------------------------AALEVLEE---ENLAENADKLGIILRN  358 (439)
T ss_dssp             --TTCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHH
T ss_pred             --CcCHHHHHHHH----------------------------------------HHHHHHhh---hhHHHHHHHHHHHHHH
Confidence              11222222111                                        46666654   2456788999999999


Q ss_pred             HHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          451 ALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       451 ~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      +|.++.+      +.+...     ...|.++.+.+.+..+  .... +.++|. ++||.++.+                 
T Consensus       359 ~L~~l~~------~~~~~~-----~~~g~~~~v~l~~~~~--~~~~~l~~~l~-~~Gv~v~~~-----------------  407 (439)
T 2oat_A          359 ELMKLPS------DVVTAV-----RGKGLLNAIVIKETKD--WDAWKVCLRLR-DNGLLAKPT-----------------  407 (439)
T ss_dssp             HHTTSCT------TTEEEE-----EEETTEEEEEECCCSS--CCHHHHHHHHH-HTTEECCBS-----------------
T ss_pred             HHHHhcC------CCcEEE-----EeeeeEEEEEEecCcc--HHHHHHHHHHH-HCCeEEecC-----------------
Confidence            9988732      333211     1257888888865321  1223 344444 578887531                 


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                             +.+.||+++++..|.+||+++++.|+++++
T Consensus       408 -----------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  437 (439)
T 2oat_A          408 -----------------------HGDIIRFAPPLVIKEDELRESIEIINKTIL  437 (439)
T ss_dssp             -----------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence                                   125899999999999999999999998875

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.54  E-value=6e-13  Score=143.14  Aligned_cols=312  Identities=9%  Similarity=0.047  Sum_probs=190.0

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||.++.      ++.++.+++++.+.+...                    .+.++.  +   .....++.+++++
T Consensus        55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~--------------------~~~~~~--~---~~~~~~~l~~~la  109 (420)
T 2pb2_A           55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL--------------------WHTSNV--F---TNEPALRLGRKLI  109 (420)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC--------------------CCCCTT--S---CCHHHHHHHHHHH
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc--------------------ccccCc--c---CCHHHHHHHHHHH
Confidence            56789999764      345788888877643311                    111111  1   1345678999999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH-------cC-CEEEEEeccCCc---------cc------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK-------RG-ARVMSAEFSWPR---------LR------------------  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~G-a~V~~~~~~~~~---------g~------------------  224 (603)
                      +++|  .++++|... ++++...+..+..       .| .+|......+..         +.                  
T Consensus       110 ~~~g--~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~  187 (420)
T 2pb2_A          110 DATF--AERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVP  187 (420)
T ss_dssp             HHSS--CSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEEC
T ss_pred             hhCC--CCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEec
Confidence            9997  467777653 3466655565544       45 366665432210         10                  


Q ss_pred             -cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-ccc---HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCC
Q 007454          225 -INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYP---YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLV  295 (603)
Q Consensus       225 -i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~p---l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~  295 (603)
                       .+.++|++.|..      ++++|.+...+|.+|. .+|   ++.+ ++|+++|+++++|.+|.+ +..  +..++....
T Consensus       188 ~~d~~~le~~i~~------~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~  261 (420)
T 2pb2_A          188 FNDLHAVKAVMDD------HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGV  261 (420)
T ss_dssp             TTCHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTC
T ss_pred             CCCHHHHHHHhcc------CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCC
Confidence             267888888753      6889988888888886 244   4544 478999999999999852 221  011122234


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      .+|+++  +.|.||. ...+|++++++++++.+.+...+++                                +   +.|
T Consensus       262 ~~diit--~sK~l~~-G~~iG~~~~~~~l~~~l~~~~~~~t--------------------------------~---~~~  303 (420)
T 2pb2_A          262 TPDILT--SAKALGG-GFPVSAMLTTQEIASAFHVGSHGST--------------------------------Y---GGN  303 (420)
T ss_dssp             CCSEEE--ECGGGGT-TSCCEEEEECHHHHTTCC----CCE--------------------------------E---CCC
T ss_pred             CCCeEE--ecccccC-CCceEEEEEhHHHHHhhcCCCcCcc--------------------------------c---CcC
Confidence            689885  5699983 3459999999876554543111100                                0   112


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ..+.++..                                        ++|+.+++   +.+.++.+.+.++|.+.|.++
T Consensus       304 ~~~~aa~~----------------------------------------a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~  340 (420)
T 2pb2_A          304 PLACAVAG----------------------------------------AAFDIINT---PEVLQGIHTKRQQFVQHLQAI  340 (420)
T ss_dssp             HHHHHHHH----------------------------------------HHHHHHSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------------------------------------HHHHHHHh---ccHHHHHHHHHHHHHHHHHHH
Confidence            22222111                                        45665432   567788889999999999876


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      ..    +.|.+....     ..|.++.|.+.+..+  .....+.+.+.++||.++.|                       
T Consensus       341 ~~----~~~~~~~~~-----~~g~~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v~~~-----------------------  386 (420)
T 2pb2_A          341 DE----QFDIFSDIR-----GMGLLIGAELKPKYK--GRARDFLYAGAEAGVMVLNA-----------------------  386 (420)
T ss_dssp             HH----HHCCEEEEE-----EETTEEEEEECGGGT--TCHHHHHHHHHHTTEECEES-----------------------
T ss_pred             Hh----cCCCeEEEE-----ecceEEEEEECCCch--HHHHHHHHHHHHCCCEEEeC-----------------------
Confidence            20    012232211     247888888865211  12233433334488887643                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                    +   .+.||+|+++..|.|||+++++.|+++++.
T Consensus       387 --------------~---~~~iRl~~~~~~t~eei~~~~~~l~~~l~~  417 (420)
T 2pb2_A          387 --------------G---ADVMRFAPSLVVEEADIHEGMQRFAQAVGK  417 (420)
T ss_dssp             --------------S---TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------------C---CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                          0   148999999999999999999999998754

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.54  E-value=7.2e-14  Score=151.42  Aligned_cols=280  Identities=9%  Similarity=0.083  Sum_probs=176.3

Q ss_pred             HHHHHHHHHc----C--CCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC----
Q 007454          174 AMKKRIMDFL----N--ISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP----  221 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~----  221 (603)
                      +.|+.|++++    |  +++++++++... +++..                     ....++..|+++..++++..    
T Consensus        99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~  178 (447)
T 3b46_A           99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELD  178 (447)
T ss_dssp             HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccc
Confidence            5677777776    4  456778665321 12211                     22344567888888887532    


Q ss_pred             -------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccH---HHH-HHHHhCCcEEEEeccccCCC---CC
Q 007454          222 -------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY---LWM-RIAQENDWHILIDACALGPK---DM  287 (603)
Q Consensus       222 -------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl---~~i-~~a~e~g~~vlvDAaq~~~~---~m  287 (603)
                             +..++.++|++.|.      ++++++.++..+|.||.++|.   +.+ ++|+++|+++++|.++....   ..
T Consensus       179 ~~~~~~~~~~~d~~~l~~~l~------~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~  252 (447)
T 3b46_A          179 QRNTRGEEWTIDFEQFEKAIT------SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSF  252 (447)
T ss_dssp             TSCBCSTTSEECHHHHHTTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC
T ss_pred             cccccccCcccCHHHHHHhhc------cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCC
Confidence                   34689999998885      268999999999999999874   433 47899999999999876421   00


Q ss_pred             CCC-CC--CCCCCcEEEEcccccCCCCCCc--eEEEEE-eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCccc
Q 007454          288 DSF-GL--SLVRPDFLICSFYQIFGENPSG--FGCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQ  361 (603)
Q Consensus       288 ~~l-dl--s~~~~Dflv~S~hK~fG~~P~G--~G~L~v-kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~  361 (603)
                      .++ .+  ...+.|+++.|++|+||  +.|  +|++++ ++++++.+....                             
T Consensus       253 ~~~~~~~~~~~~~~i~i~S~sK~~~--~~G~riG~~~~~~~~l~~~l~~~~-----------------------------  301 (447)
T 3b46_A          253 TRIATLSPEIGQLTLTVGSAGKSFA--ATGWRIGWVLSLNAELLSYAAKAH-----------------------------  301 (447)
T ss_dssp             CCGGGSCHHHHTTEEEEEEHHHHTT--CTTSCCEEEECSCHHHHHHHHHHH-----------------------------
T ss_pred             cCHHHcCCCCCCcEEEEecCchhcC--CcchhhEEEEeCCHHHHHHHHHHH-----------------------------
Confidence            121 12  13478999999999999  558  999998 665543332100                             


Q ss_pred             CcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHH
Q 007454          362 TSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRR  440 (603)
Q Consensus       362 ~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r  440 (603)
                         .   ....+.+.+...++.                                        ++|+..... .++.+.++
T Consensus       302 ---~---~~~~~~~~~~~~a~~----------------------------------------~aL~~~~~~~~~~~~~~~  335 (447)
T 3b46_A          302 ---T---RICFASPSPLQEACA----------------------------------------NSINDALKIGYFEKMRQE  335 (447)
T ss_dssp             ---H---HHTSSCCHHHHHHHH----------------------------------------HHHHHHHHHTHHHHHHHH
T ss_pred             ---h---hccCCCChHHHHHHH----------------------------------------HHHhCCcchHHHHHHHHH
Confidence               0   011223333332222                                        355543211 26678888


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC---C---------CccCHHHHHHHHhcCCcE
Q 007454          441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK---R---------EKIEPVLVQKLADRENIS  508 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~---g---------~~v~~~~V~~Lad~~gI~  508 (603)
                      .+.++++|.+.|.++      |   ++++.|.    .+..+.+.+.+..   +         ..-..+++++|++++||.
T Consensus       336 ~~~~~~~l~~~L~~~------g---~~~~~~~----~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~  402 (447)
T 3b46_A          336 YINKFKIFTSIFDEL------G---LPYTAPE----GTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVV  402 (447)
T ss_dssp             HHHHHHHHHHHHHHH------T---CCEECCS----BSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHHHC------C---CeecCCC----eeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEE
Confidence            899999999999876      2   3344442    3556777776421   0         011124556677789999


Q ss_pred             EeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          509 LSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       509 lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      ++.|..|.....                             .....+.||+|++.  +.|||++.++.|+++
T Consensus       403 v~pg~~f~~~~~-----------------------------~~~~~~~iRls~~~--~~e~l~~~~~~l~~~  443 (447)
T 3b46_A          403 AIPPTEFYIKEH-----------------------------EKAAENLLRFAVCK--DDAYLENAVERLKLL  443 (447)
T ss_dssp             CBCGGGGSCGGG-----------------------------GGGGTTEEEEECCS--CHHHHHHHHHHGGGG
T ss_pred             EECchHhCCCCc-----------------------------cCCCCCEEEEEEeC--CHHHHHHHHHHHHHH
Confidence            988865532100                             00113689999984  899999999988764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.54  E-value=1.1e-13  Score=148.54  Aligned_cols=321  Identities=12%  Similarity=0.087  Sum_probs=186.2

Q ss_pred             CCceeeecCCCC-CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc--
Q 007454          107 SNHTCLDYFGIG-LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL--  183 (603)
Q Consensus       107 ~~~vYLDyaa~t-l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l--  183 (603)
                      ++.|+|+.+... +.++.+++++.+.+...                    ++.+....|+..  ....+.|++|++++  
T Consensus        56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~~~~~y~~~--~g~~~l~~~ia~~~~~  113 (432)
T 3ei9_A           56 AQVISLGIGDTTEPIPEVITSAMAKKAHEL--------------------STIEGYSGYGAE--QGAKPLRAAIAKTFYG  113 (432)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHHHHT--------------------TSTTTCCCCCCT--TCCHHHHHHHHHHHHT
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhcc--------------------cccCCccCCCCC--CCCHHHHHHHHHHHHc
Confidence            457888877655 46788888876543211                    111111111110  11246788888886  


Q ss_pred             --CCCCCcEEEeccCc-hHHHHHHHHHHcCCEEEEEeccCCccccCHH----------------------------HHHH
Q 007454          184 --NISENDYVYDYESE-AVEAMIRTSEKRGARVMSAEFSWPRLRINSE----------------------------KLRK  232 (603)
Q Consensus       184 --na~~~e~vf~~es~-sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~----------------------------~L~~  232 (603)
                        ++++++++|+.... ++..+ ...-+.|.+|......|+.- ++.-                            .+..
T Consensus       114 ~~~~~~~~i~~t~G~~~al~~l-~~l~~~gd~Vl~~~p~y~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (432)
T 3ei9_A          114 GLGIGDDDVFVSDGAKCDISRL-QVMFGSNVTIAVQDPSYPAY-VDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFP  191 (432)
T ss_dssp             TTTCCGGGEEEESCHHHHHHHH-HHHHCTTCCEEEEESCCTHH-HHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSC
T ss_pred             cCCCCcceEEECCChHHHHHHH-HHHcCCCCEEEEeCCCCHHH-HHHHHHcCCcccccccccccCceEEeccCcccCCcC
Confidence              88899998876543 33322 22234455555544443210 0000                            0000


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC---CCCCCCCCCCC----CCCcEEE
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG---PKDMDSFGLSL----VRPDFLI  301 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~---~~~m~~ldls~----~~~Dflv  301 (603)
                      .+..    .++++++.+...+|.||.++|.+.+    ++|+++|+++++|.++..   +.  .+..+..    .+.++++
T Consensus       192 ~l~~----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~--~~~~~~~~~~~~~~~i~~  265 (432)
T 3ei9_A          192 DLST----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD--NPRSIFEIPGAEEVAMET  265 (432)
T ss_dssp             CGGG----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS--CCSSGGGSTTGGGTEEEE
T ss_pred             Chhh----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC--CCCChhhcCCCCCeEEEE
Confidence            0111    2468899999999999999997633    358999999999998762   22  1222222    2467999


Q ss_pred             EcccccCCCCCCc--eEEEEEeCCCCcC-cCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhh
Q 007454          302 CSFYQIFGENPSG--FGCLFVKKSTVPI-LVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSG  378 (603)
Q Consensus       302 ~S~hK~fG~~P~G--~G~L~vkk~~~~~-L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~g  378 (603)
                      .|++|.||  +.|  +|+++++++.+.. ..+.     ..      . +  ..     .       ..  ...++++..+
T Consensus       266 ~S~SK~~g--~~G~r~G~~~~~~~~~~~~~~~~-----~~------~-~--~~-----~-------~~--~~~~~~~~~~  315 (432)
T 3ei9_A          266 ASFSNYAG--FTGVRLGWTVIPKKLLYSDGFPV-----AK------D-F--NR-----I-------IC--TCFNGASNIS  315 (432)
T ss_dssp             EESHHHHC--TTTTCCEEEECCTTCBCTTSCBH-----HH------H-H--HH-----H-------HH--HSCCCSCHHH
T ss_pred             ecchhccC--CcccceEEEEEChHHhhcchHHH-----HH------H-H--HH-----H-------hc--cccCCCCHHH
Confidence            99999999  446  7999988876311 0000     00      0 0  00     0       00  1122334443


Q ss_pred             hhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007454          379 PMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHP  458 (603)
Q Consensus       379 i~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~  458 (603)
                      ..+..                                        ++++....-.++.+.++++.++++|.+.|.++   
T Consensus       316 ~~a~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---  352 (432)
T 3ei9_A          316 QAGAL----------------------------------------ACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL---  352 (432)
T ss_dssp             HHHHH----------------------------------------HHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHH----------------------------------------HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC---
Confidence            33221                                        12211000125677788888999999999875   


Q ss_pred             CCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccc
Q 007454          459 NTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREA  538 (603)
Q Consensus       459 ~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~  538 (603)
                         |   +++++|.    .+..+.+.+++.+    ..+++.+|+++.||.++.|..|.+                     
T Consensus       353 ---g---~~~~~~~----~~~~~~~~~~~~~----~~~~~~~ll~~~gv~v~~g~~f~~---------------------  397 (432)
T 3ei9_A          353 ---G---YDVYGGK----NAPYVWVHFPNQS----SWDVFAEILEKTHVVTTPGSGFGP---------------------  397 (432)
T ss_dssp             ---T---CCEEECS----SSSEEEEECTTSC----HHHHHHHHHHHHCEECEEGGGGCG---------------------
T ss_pred             ---C---ceecCCC----cceEEEEECCCCC----HHHHHHHHHHHCCEEEeCchHhCC---------------------
Confidence               2   4455542    4677888887432    234567788888999999876632                     


Q ss_pred             ccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          539 KSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       539 ~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                   .+.+.||+|+  .++.|||++.++.|++-
T Consensus       398 -------------~~~~~iRis~--~~~~e~l~~~l~rl~~~  424 (432)
T 3ei9_A          398 -------------GGEGFVRVSA--FGHRENILEACRRFKQL  424 (432)
T ss_dssp             -------------GGTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred             -------------CCCCEEEEEe--cCCHHHHHHHHHHHHHH
Confidence                         1126899996  67999999999887753

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.54  E-value=8.9e-14  Score=148.02  Aligned_cols=302  Identities=11%  Similarity=0.004  Sum_probs=170.7

Q ss_pred             HHHHHHHHH-HHHcCCCCCcEEEecc-CchH----------------------HHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          171 LESAMKKRI-MDFLNISENDYVYDYE-SEAV----------------------EAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       171 ~~~~aR~~I-a~~lna~~~e~vf~~e-s~sV----------------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ...+.|++| ++++|. .++.++... +.++                      ......++..|++++.+++++.++.++
T Consensus        37 ~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d  115 (377)
T 3ju7_A           37 INQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMD  115 (377)
T ss_dssp             HHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBC
T ss_pred             HHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcC
Confidence            356788889 999983 334443211 1111                      112334566799999999886678899


Q ss_pred             HHHHHHHH-hhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCC---CCcEEE
Q 007454          227 SEKLRKMV-VSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLV---RPDFLI  301 (603)
Q Consensus       227 ~~~L~~~l-~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~---~~Dflv  301 (603)
                      .++|+++| ..+    ++|+++.   .+|.+|...|++.+ ++|+ +|++|++|++|..+.   ..+....   ..|+.+
T Consensus       116 ~~~l~~~i~~~~----~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~---~~~~~~~g~~~~d~~~  184 (377)
T 3ju7_A          116 KTVLWDKIEELK----EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGL---MNGGMHYGQDFSGMII  184 (377)
T ss_dssp             HHHHHHHHHHHG----GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTC---EETTEETTTTCSSEEE
T ss_pred             HHHHHHHHhcCC----CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCC---eECCEeccCCCCcEEE
Confidence            99999998 431    1388876   35789999999865 5899 999999999998875   2222222   246666


Q ss_pred             Ec--ccccCCCCCCceEEEEE-eCC-CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          302 CS--FYQIFGENPSGFGCLFV-KKS-TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       302 ~S--~hK~fG~~P~G~G~L~v-kk~-~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      +|  .||++|  + |.|.+++ ++. ..+.++....+|...      .+.  .      .+      ..  +..++.++.
T Consensus       185 ~S~~~~K~l~--~-g~gG~~~~~~~~l~~~~~~~~~~g~~~------~~~--~------~~------~g--~~~~~~~~~  239 (377)
T 3ju7_A          185 YSFHATKPFG--I-GEGGLIYSKNEEDIQRIKRMGNFGFDT------NRE--C------TM------MG--FNCKMSEYA  239 (377)
T ss_dssp             EECBTTSSSC--C-BSCEEEEESCHHHHHHHHHHTBTTBCT------TSC--B------CS------SC--CBCCCCHHH
T ss_pred             EECCCCCcCC--C-CCcEEEEECCHHHHHHHHHHHhcCCCC------CCc--e------ee------cc--ccCCCCHHH
Confidence            66  569999  5 5555444 432 222333222223210      000  0      00      00  122333333


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      ..+++                                         .+++     .++...++.+.+.+++.+.|.++..
T Consensus       240 aa~~~-----------------------------------------~~l~-----~l~~~~~~~~~~~~~~~~~L~~~~~  273 (377)
T 3ju7_A          240 AAIGI-----------------------------------------ATMK-----KWDDKLKERTRISEWYKQLLQSNGL  273 (377)
T ss_dssp             HHHHH-----------------------------------------HHHH-----THHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHH-----------------------------------------HHHH-----HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            32222                                         1222     4667777888899999999987631


Q ss_pred             CCCCCCceEEEeCCCCCCCCCC-EEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCc--ccCccCCchhhhhhHHHHHhh
Q 007454          458 PNTEGNALVKIYGPKIRFDRGP-ALAFNVFDWKREKIEPVLVQKLADRENISLSYGS--LHHIWFSDKYQKEKDNVLEKT  534 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~-ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~--~C~~~~~~~~~~~~~~~l~~~  534 (603)
                      ..   .+ +   .+.......+ .+.+.+++.    ...+.+.+.+.++||.++.++  .|+....-..     ...   
T Consensus       274 ~~---~~-~---~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~-----~~~---  334 (377)
T 3ju7_A          274 MK---KG-W---QLQKTEAVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRN-----YKS---  334 (377)
T ss_dssp             TT---TT-C---BCCCCSCBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTT-----SCB---
T ss_pred             cc---cc-c---cCCCCCcceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccchhhhc-----CCC---
Confidence            00   11 1   1111111112 234554431    234556666778899999987  5664321110     000   


Q ss_pred             hcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          535 DREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ..|...         .....+.||++++...|.+||+++++.|++++..
T Consensus       335 ~~~p~~---------~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          335 TDLTRT---------NKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             SCCHHH---------HHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             CCCHHH---------HHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            000000         0112359999999999999999999999887643

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.53  E-value=5e-13  Score=143.43  Aligned_cols=286  Identities=11%  Similarity=0.064  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccCc-hH--HHHHHHH---------------------------------HHcCCEEEEE
Q 007454          173 SAMKKRIMDFLNISENDYVYDYESE-AV--EAMIRTS---------------------------------EKRGARVMSA  216 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es~-sV--~~~~~~a---------------------------------~~~Ga~V~~~  216 (603)
                      .+.|+.|++++++++++++++..+. ++  ..+....                                 +..|++++.+
T Consensus        81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v  160 (427)
T 3ppl_A           81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISV  160 (427)
T ss_dssp             HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEe
Confidence            4799999999999999999886553 33  1222222                                 2345566666


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCeeEEE-EeCccccccccccHH---HH-HHH-HhCCcEEEEeccccC----CCC
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFV-FPLHSRMTGARYPYL---WM-RIA-QENDWHILIDACALG----PKD  286 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~-~~~~Sn~TG~~~pl~---~i-~~a-~e~g~~vlvDAaq~~----~~~  286 (603)
                      +++ +++ ++.++|++.|..     +++++|. .|..+|.||.++|.+   .+ ++| +++|+++++|.++..    +..
T Consensus       161 ~~~-~~g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~  233 (427)
T 3ppl_A          161 PMN-EDG-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF  233 (427)
T ss_dssp             EEE-TTE-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred             CCC-CCC-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence            665 344 899999999842     3577776 569999999999997   33 346 899999999998754    110


Q ss_pred             CCCCCCC-------CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCc
Q 007454          287 MDSFGLS-------LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEP  359 (603)
Q Consensus       287 m~~ldls-------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~  359 (603)
                      ..++++.       ..+.++++.|++|+++ +..++|+++.++++++.+....            +              
T Consensus       234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~------------~--------------  286 (427)
T 3ppl_A          234 PEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHA------------G--------------  286 (427)
T ss_dssp             CCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHH------------H--------------
T ss_pred             CCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHh------------h--------------
Confidence            0122222       3457899999999955 3456787776655443332100            0              


Q ss_pred             ccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHH-HHHHhcCHHHHH
Q 007454          360 EQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGL-DQVDSLGLTMIS  438 (603)
Q Consensus       360 ~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-d~~~~iGl~~i~  438 (603)
                               ......+.....++.            ..+.                      ....+ +++.+ -.+.+.
T Consensus       287 ---------~~~~~~~~~~q~~~~------------~~l~----------------------~~~~~~~~~~~-~~~~~~  322 (427)
T 3ppl_A          287 ---------IRGIGPNKVNQLAHA------------RYFG----------------------DAEGVRAVMRK-HAASLA  322 (427)
T ss_dssp             ---------HHCSCCCHHHHHHHH------------HHHC----------------------SHHHHHHHHHH-HHHHHH
T ss_pred             ---------cccCCCCHHHHHHHH------------HHHh----------------------ChhhHHHHHHH-HHHHHH
Confidence                     000011111111111            0000                      00011 11111 123334


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454          439 RRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIW  518 (603)
Q Consensus       439 ~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~  518 (603)
                      ++...|.+.|.+.|..+.        .+++..|.    .+..+.+.+++.     ....+.+++.++||.++.|+.|...
T Consensus       323 ~~~~~l~~~L~~~l~~~~--------~~~~~~p~----~g~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~~g~~~~~  385 (427)
T 3ppl_A          323 PKFNKVLEILDSRLAEYG--------VAQWTVPA----GGYFISLDVVPG-----TASRVAELAKEAGIALTGAGSSYPL  385 (427)
T ss_dssp             HHHHHHHHHHHHHHGGGT--------CCEECCCS----BSSCEEEECSTT-----CHHHHHHHHHHTTEECCCTTTTSGG
T ss_pred             HHHHHHHHHHHHhcCCCC--------ceEEeCCC----ccEEEEEECCcc-----hHHHHHHHHHHCCCEEecCcCcCCC
Confidence            444455555555554431        24555552    466788888763     2345666677889999986554321


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .                              .....+.||+|++.. +.+||+++++.|++++..-
T Consensus       386 ~------------------------------~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~  420 (427)
T 3ppl_A          386 R------------------------------QDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLA  420 (427)
T ss_dssp             G------------------------------CCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             C------------------------------CCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence            0                              011236999999877 9999999999999988764

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.52  E-value=3.3e-14  Score=151.57  Aligned_cols=182  Identities=11%  Similarity=0.038  Sum_probs=119.5

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-  184 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~-~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-  184 (603)
                      ..-.|||+.+.++.++.+.+++.+ .+...  .                      .+.|+.  ..-..+.|+.|+++++ 
T Consensus        35 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~--~----------------------~~~y~~--~~g~~~lr~~ia~~~~~   88 (412)
T 1yaa_A           35 GIGAYRDDNGKPWVLPSVKAAEKLIHNDSS--Y----------------------NHEYLG--ITGLPSLTSNAAKIIFG   88 (412)
T ss_dssp             SSCCCBCTTSCBCCCHHHHHHHHHHHTCTT--C----------------------CCCCCC--TTCCHHHHHHHHHHHHC
T ss_pred             eeeeeeCCCCCCCCcHHHHHHHHhhhcCcc--c----------------------ccCCCC--CCCcHHHHHHHHHHHhc
Confidence            445789999999999999999876 54310  0                      000100  0112478888888883 


Q ss_pred             -----CCCCcEEE--eccC-chHHHH-----------------------HHHHHHcCCEEEEEec-cCCccccCHHHHHH
Q 007454          185 -----ISENDYVY--DYES-EAVEAM-----------------------IRTSEKRGARVMSAEF-SWPRLRINSEKLRK  232 (603)
Q Consensus       185 -----a~~~e~vf--~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~  232 (603)
                           ++++++++  +... +++..+                       ...++..|+++..++. +..+..++.++|++
T Consensus        89 ~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~  168 (412)
T 1yaa_A           89 TQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLN  168 (412)
T ss_dssp             TTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHH
T ss_pred             CCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHH
Confidence                 25778887  5322 122221                       2234456888888887 42256789999999


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCC-C-----CCCCC-CCCCCCC----
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGP-K-----DMDSF-GLSLVRP----  297 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~-~-----~m~~l-dls~~~~----  297 (603)
                      .|...   ++.+.+++++..+|.||.++|.+.    +++|+++|+++++|.++..- .     ...++ ++...+.    
T Consensus       169 ~l~~~---~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (412)
T 1yaa_A          169 AIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSP  245 (412)
T ss_dssp             HHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCC
T ss_pred             HHHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcc
Confidence            99752   124677888999999999999763    34689999999999986421 1     00122 2222233    


Q ss_pred             cEEEEcccccCCCCCCc--eEEEE
Q 007454          298 DFLICSFYQIFGENPSG--FGCLF  319 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G--~G~L~  319 (603)
                      ++++.|++|.||  |.|  +|+++
T Consensus       246 ~i~~~s~sK~~~--~~GlriG~~~  267 (412)
T 1yaa_A          246 VFVCQSFAKNAG--MYGERVGCFH  267 (412)
T ss_dssp             EEEEEECTTTSC--CGGGCEEEEE
T ss_pred             eEEEeccCCCCC--CcCCcceEEE
Confidence            588999999999  778  69988

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.51  E-value=5.8e-14  Score=152.46  Aligned_cols=181  Identities=14%  Similarity=0.116  Sum_probs=119.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na  185 (603)
                      .--+|+|+.+.+++.+.+.+++.......    +              ..+.......|      ..+.|+.|++++ |.
T Consensus        55 ~~g~~~d~~~~~~v~~av~~a~~~~~~~~----~--------------~~~~~Y~~~~G------~~~lr~~ia~~l~g~  110 (448)
T 3meb_A           55 GVGAYRDESGKPWILPAVKEAEAIISSDL----S--------------KYNKEYPPVAG------FPLFLEAAQFLMFGK  110 (448)
T ss_dssp             SSCCCCCTTSCCCCCHHHHHHHHHHHHCT----T--------------TTCCSCCCTTC------CHHHHHHHHHHHHCT
T ss_pred             ecccccCCCCCEechHHHHHHHHHHhhcc----c--------------CCCCCCCCCcc------hHHHHHHHHHHhcCC
Confidence            44589999999999999999854432000    0              01111111111      247888999888 87


Q ss_pred             C-----CCcEEE--eccC-chHH-----------------------HHHHHHH----HcCCEEEEEec-cCC-ccccCHH
Q 007454          186 S-----ENDYVY--DYES-EAVE-----------------------AMIRTSE----KRGARVMSAEF-SWP-RLRINSE  228 (603)
Q Consensus       186 ~-----~~e~vf--~~es-~sV~-----------------------~~~~~a~----~~Ga~V~~~~~-~~~-~g~i~~~  228 (603)
                      +     ++++++  +... +++.                       .....++    ..|+++..++. +.. ++.++.+
T Consensus       111 ~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e  190 (448)
T 3meb_A          111 DSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFS  190 (448)
T ss_dssp             TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHH
T ss_pred             CccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHH
Confidence            7     688887  4321 1111                       1123345    77999999988 533 4789999


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEecc-ccCCCCCCCCC-----CC---CC
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDAC-ALGPKDMDSFG-----LS---LV  295 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAa-q~~~~~m~~ld-----ls---~~  295 (603)
                      +|++.|...   .+++.+++++..+|.||..+|.+.   | ++|+++|+++++|.+ +.++.  ..++     +.   ..
T Consensus       191 ~l~~~l~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~  265 (448)
T 3meb_A          191 NTKKDIQSA---PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFAT--GSFEADAFAVRMFVDA  265 (448)
T ss_dssp             HHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSS--SCHHHHTHHHHHHHHT
T ss_pred             HHHHHHHhC---CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccC--CCcccCchhHHHHhhc
Confidence            999999742   135889999999999999999863   3 368999999999987 43333  1211     11   12


Q ss_pred             CCc-EEEEcccccCCCCCCc--eEEE
Q 007454          296 RPD-FLICSFYQIFGENPSG--FGCL  318 (603)
Q Consensus       296 ~~D-flv~S~hK~fG~~P~G--~G~L  318 (603)
                      +.+ +++.|++|.||  +.|  +|++
T Consensus       266 ~~~~i~~~S~SK~~g--~~G~RiG~l  289 (448)
T 3meb_A          266 GVEVLVAQSFSKNFG--LYGERIGCL  289 (448)
T ss_dssp             TCCEEEEEECTTTSC--CGGGCCEEE
T ss_pred             CCcEEEEecccccCC--Cccccceee
Confidence            334 67899999999  668  7887

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.50  E-value=1.5e-12  Score=141.39  Aligned_cols=275  Identities=14%  Similarity=0.082  Sum_probs=172.2

Q ss_pred             HHHHHHHHHHHHHcC-CCCCcEEEecc-CchHHHHHHHHH----Hc----------CCEEEEEeccCC------------
Q 007454          170 GLESAMKKRIMDFLN-ISENDYVYDYE-SEAVEAMIRTSE----KR----------GARVMSAEFSWP------------  221 (603)
Q Consensus       170 ~~~~~aR~~Ia~~ln-a~~~e~vf~~e-s~sV~~~~~~a~----~~----------Ga~V~~~~~~~~------------  221 (603)
                      +...+.+++|+++++ ..+++++|... ++++...+..++    ++          |.+|......+.            
T Consensus       101 ~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~  180 (449)
T 2cjg_A          101 VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNT  180 (449)
T ss_dssp             HHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCS
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCC
Confidence            345678888999998 56678887753 345555554433    11          667666542211            


Q ss_pred             ---------------------c--c---------ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH
Q 007454          222 ---------------------R--L---------RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM  265 (603)
Q Consensus       222 ---------------------~--g---------~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i  265 (603)
                                           +  .         .++.++|++.|...   .+++++|.+...+|+||.+.|    ++.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l  257 (449)
T 2cjg_A          181 KPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETR---PHDIACFVAEPIQGEGGDRHFRPEFFAAM  257 (449)
T ss_dssp             CHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHS---TTTEEEEEECSEETTTTCEECCHHHHHHH
T ss_pred             chhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhc---CCceEEEEEeCcCCCCCCccCCHHHHHHH
Confidence                                 0  0         01223488888531   136899999889999998777    7755


Q ss_pred             -HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCC-Cceecc
Q 007454          266 -RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLL  340 (603)
Q Consensus       266 -~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~  340 (603)
                       ++|+++|+++++|.+|. ++..  +..++.....+|++++|  |.|   |  +|++++++++++.|.+.+.+ +.    
T Consensus       258 ~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~s--K~l---~--iG~~~~~~~~~~~l~~~~~~~~~----  326 (449)
T 2cjg_A          258 RELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFG--KKT---Q--VCGVMAGRRVDEVADNVFAVPSR----  326 (449)
T ss_dssp             HHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGG---S--SEEEEECGGGGGSTTCTTTSTTS----
T ss_pred             HHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEec--Ccc---c--EEEEEECHHHhhhhhhcccCCcc----
Confidence             47999999999999987 4331  01112223478999877  987   3  79999999887666542221 10    


Q ss_pred             ccccccccccccCCCCCCcccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCC
Q 007454          341 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGG  418 (603)
Q Consensus       341 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  418 (603)
                                                   ..+|  .|..+.++..                                   
T Consensus       327 -----------------------------~~~t~~~n~~~~~aa~-----------------------------------  342 (449)
T 2cjg_A          327 -----------------------------LNSTWGGNLTDMVRAR-----------------------------------  342 (449)
T ss_dssp             -----------------------------SCCSSSSCHHHHHHHH-----------------------------------
T ss_pred             -----------------------------cccCCCCCHHHHHHHH-----------------------------------
Confidence                                         0111  2333332221                                   


Q ss_pred             chhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCce-EEEeCCCCCCCCCCEEEEEEccCCCCccCHHH
Q 007454          419 SEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNAL-VKIYGPKIRFDRGPALAFNVFDWKREKIEPVL  497 (603)
Q Consensus       419 ~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~pl-v~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~  497 (603)
                           ++++.+.+   +.+.++++.+.++|.++|.++..    +.|. +...     ...|.++.|.+.+..   ....+
T Consensus       343 -----aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~----~~~~~~~~~-----~~~g~~~~~~~~~~~---~~~~~  402 (449)
T 2cjg_A          343 -----RILEVIEA---EGLFERAVQHGKYLRARLDELAA----DFPAVVLDP-----RGRGLMCAFSLPTTA---DRDEL  402 (449)
T ss_dssp             -----HHHHHHHH---HTHHHHHHHHHHHHHHHHHHHHH----HSTTTSEEE-----EEETTEEEEECSSHH---HHHHH
T ss_pred             -----HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh----hCCCceeeE-----eeccEEEEEEECChH---HHHHH
Confidence                 46776654   34567888899999999987620    0121 2111     124778888775410   11234


Q ss_pred             HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHH
Q 007454          498 VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFV  577 (603)
Q Consensus       498 V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l  577 (603)
                      +.+|+ ++||.++.|                                     +   .+.||+|+++.+|.+||+++++.|
T Consensus       403 ~~~l~-~~Gv~v~~~-------------------------------------g---~~~iRi~~~~~~t~e~i~~~l~~l  441 (449)
T 2cjg_A          403 IRQLW-QRAVIVLPA-------------------------------------G---ADTVRFRPPLTVSTAEIDAAIAAV  441 (449)
T ss_dssp             HHHHH-HTTEECEEE-------------------------------------T---TTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             HHHHH-HCCeEEecC-------------------------------------C---CCEEEEECCCCCCHHHHHHHHHHH
Confidence            44555 578887643                                     0   258999999999999999999999


Q ss_pred             HHHHhh
Q 007454          578 AQFLDA  583 (603)
Q Consensus       578 ~~~l~~  583 (603)
                      +++++.
T Consensus       442 ~~~l~~  447 (449)
T 2cjg_A          442 RSALPV  447 (449)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.48  E-value=1.5e-12  Score=140.43  Aligned_cols=138  Identities=9%  Similarity=0.052  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEec-------------------------cCchH-HHHHHHHHHcCCEEEEEeccCCc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDY-------------------------ESEAV-EAMIRTSEKRGARVMSAEFSWPR  222 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~-------------------------es~sV-~~~~~~a~~~Ga~V~~~~~~~~~  222 (603)
                      ....++.+++++++.|.+  +.++..                         .+... ..+...+++.|+++..++.+   
T Consensus        80 ~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~---  154 (414)
T 3ndn_A           80 NPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD---  154 (414)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred             ChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC---
Confidence            345678889999999862  333321                         11111 11222345578888888764   


Q ss_pred             cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEE
Q 007454          223 LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLI  301 (603)
Q Consensus       223 g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv  301 (603)
                         +.++|+++|..      +|++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|....++   .+++|+++
T Consensus       155 ---d~~~l~~ai~~------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~---~~g~div~  222 (414)
T 3ndn_A          155 ---DLSQWERALSV------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQGF---PLGVDVVV  222 (414)
T ss_dssp             ---CHHHHHHHTSS------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCG---GGTCSEEE
T ss_pred             ---CHHHHHHhcCC------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCch---hcCCCeEe
Confidence               67899988863      68999999999999999999966 5899999999999998876411233   46789999


Q ss_pred             EcccccCCCCCCc---eEEEEEeCCCC
Q 007454          302 CSFYQIFGENPSG---FGCLFVKKSTV  325 (603)
Q Consensus       302 ~S~hK~fG~~P~G---~G~L~vkk~~~  325 (603)
                      .|++|+||  +.|   .|+++.+++.+
T Consensus       223 ~S~sK~l~--~~G~~~~G~vv~~~~~~  247 (414)
T 3ndn_A          223 YSGTKHID--GQGRVLGGAILGDREYI  247 (414)
T ss_dssp             EETTTTTT--CSSCCCCEEEEECHHHH
T ss_pred             ccCCcccc--CCCCceEEEEEECHHHH
Confidence            99999999  557   68888876543

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.47  E-value=1.3e-12  Score=140.26  Aligned_cols=323  Identities=12%  Similarity=0.062  Sum_probs=193.2

Q ss_pred             CCceeeecCCCC------CCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG------LFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~t------l~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||+++..      ..++.+++++.+.+...                    .+.+.    +. ......+.+++|+
T Consensus        41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------------------~~~~~----~~-~~~~~~~l~~~la   95 (433)
T 1zod_A           41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL--------------------DHLFS----EM-LSRPVVDLATRLA   95 (433)
T ss_dssp             TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC--------------------CCCCT----TC-CCHHHHHHHHHHH
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC--------------------ccccc----cc-CCHHHHHHHHHHH
Confidence            457899995432      23788998877543210                    00000    00 1234567788899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCC-------------------------------c----
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWP-------------------------------R----  222 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~-------------------------------~----  222 (603)
                      +++++++++++|+.. ++++...+..+.  ..+.+|......++                               .    
T Consensus        96 ~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (433)
T 1zod_A           96 NITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRP  175 (433)
T ss_dssp             HHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSC
T ss_pred             HhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCccccc
Confidence            999988888888754 345655555443  22345554332110                               0    


Q ss_pred             ---------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC-
Q 007454          223 ---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD-  286 (603)
Q Consensus       223 ---------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~-  286 (603)
                               +.++.++|++.|....  .+++++|.+...+|.||.+.|    ++.+ ++|+++|+++++|.++. .+.. 
T Consensus       176 ~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g  253 (433)
T 1zod_A          176 RFERNGAYDYLAELDYAFDLIDRQS--SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG  253 (433)
T ss_dssp             CCEETTEECHHHHHHHHHHHHHHHC--CSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTS
T ss_pred             ccCCchhhhHHHHHHHHHHHHHhcC--CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCc
Confidence                     0135888998886310  125788888777888998877    8755 58999999999999887 4431 


Q ss_pred             -CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCccc
Q 007454          287 -MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKS  365 (603)
Q Consensus       287 -m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~  365 (603)
                       +..++.....+|++++|  |.||. +..+|++++++++++.+.+...                                
T Consensus       254 ~~~~~~~~~~~~di~s~s--K~~~~-G~~ig~~~~~~~~~~~~~~~~~--------------------------------  298 (433)
T 1zod_A          254 TMFACQRDGVTPDILTLS--KTLGA-GLPLAAIVTSAAIEERAHELGY--------------------------------  298 (433)
T ss_dssp             SSSTHHHHTCCCSEEEEC--HHHHT-TSSCEEEEECHHHHHHHHHTTC--------------------------------
T ss_pred             hHhHHhhcCCCCCEEEec--ccccC-CCCeeEEEEhHHHHHhhccCCC--------------------------------
Confidence             11122223568988766  98883 3458999998876654432100                                


Q ss_pred             ccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHH
Q 007454          366 KQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRC  443 (603)
Q Consensus       366 ~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~  443 (603)
                         ...+|  .|..+.++..                                        ++++.+.+-   ...++++.
T Consensus       299 ---~~~~t~~~~~~~~~a~~----------------------------------------aal~~~~~~---~~~~~~~~  332 (433)
T 1zod_A          299 ---LFYTTHVSDPLPAAVGL----------------------------------------RVLDVVQRD---GLVARANV  332 (433)
T ss_dssp             ---CCCCTTTTCHHHHHHHH----------------------------------------HHHHHHHHT---THHHHHHH
T ss_pred             ---CCCCCCCcCHHHHHHHH----------------------------------------HHHHHHHhC---CHHHHHHH
Confidence               00112  1333332221                                        477766542   34567788


Q ss_pred             HHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--C---CccCHHHHHHHHhcCCcEEeeCcccCcc
Q 007454          444 LINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--R---EKIEPVLVQKLADRENISLSYGSLHHIW  518 (603)
Q Consensus       444 L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g---~~v~~~~V~~Lad~~gI~lr~G~~C~~~  518 (603)
                      +.++|.++|.++..    +.|.+..+.     ..|.++.+.+.+..  +   ......+..+|. ++||.++.|...   
T Consensus       333 ~~~~l~~~l~~l~~----~~~~~~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~---  399 (433)
T 1zod_A          333 MGDRLRRGLLDLME----RFDCIGDVR-----GRGLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLP---  399 (433)
T ss_dssp             HHHHHHHHHHHHHH----HCTTEEEEE-----EETTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCT---
T ss_pred             HHHHHHHHHHHHHH----hCCCeEEEE-----EEEEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCC---
Confidence            88888888877520    012232221     24678888876411  0   011223344444 679988755210   


Q ss_pred             CCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          519 FSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       519 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                     +  ..+.||+|+++..|.+||+++++.|++++++
T Consensus       400 -------------------------------~--~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~  431 (433)
T 1zod_A          400 -------------------------------G--MGGVFRIAPPLTVSEDEIDLGLSLLGQAIER  431 (433)
T ss_dssp             -------------------------------T--SCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------C--CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence                                           0  1258999999999999999999999988753

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.47  E-value=3e-13  Score=143.42  Aligned_cols=182  Identities=9%  Similarity=0.006  Sum_probs=120.3

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      .--+|+|+.+.+++.+.+.+++.......                    .+.......|      ..+.|+.|+++++..
T Consensus        34 ~~g~~~d~~~~~~~~~~v~~a~~~~~~~~--------------------~~~~Y~~~~g------~~~lr~~ia~~~~~~   87 (401)
T 7aat_A           34 GVGAYRDDNGKPYVLNCVRKAEAMIAAKK--------------------MDKEYLPIAG------LADFTRASAELALGE   87 (401)
T ss_dssp             CCCSCCCTTSCCCCCHHHHHHHHHHHHTT--------------------CCCCCCCTTC------CHHHHHHHHHHHHCT
T ss_pred             eeeeEECCCCCEechHHHHHHHHHhcccc--------------------cccCCCCCCC------CHHHHHHHHHHhcCC
Confidence            44679999999999888888766532110                    1111111111      246888888888754


Q ss_pred             ------CCcEEE--eccC-chHHHH------------------------HHHHHHcCCEEEEEeccC-CccccCHHHHHH
Q 007454          187 ------ENDYVY--DYES-EAVEAM------------------------IRTSEKRGARVMSAEFSW-PRLRINSEKLRK  232 (603)
Q Consensus       187 ------~~e~vf--~~es-~sV~~~------------------------~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~  232 (603)
                            ++++++  +... +++..+                        ...++..|+++..++++. .++.++.++|++
T Consensus        88 ~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~  167 (401)
T 7aat_A           88 NSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAME  167 (401)
T ss_dssp             TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHH
T ss_pred             CccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHH
Confidence                  788866  4321 122211                        223455688888887642 257889998888


Q ss_pred             HHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEecc-ccCCCCCCCC-----CC----CCCCCc
Q 007454          233 MVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDAC-ALGPKDMDSF-----GL----SLVRPD  298 (603)
Q Consensus       233 ~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAa-q~~~~~m~~l-----dl----s~~~~D  298 (603)
                      .|..   .++++++++++..+|.||..++.+.   + ++|+++|+++++|.+ +....  ...     .+    ....-.
T Consensus       168 ~l~~---~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~  242 (401)
T 7aat_A          168 DISK---IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFAS--GDINRDAWALRHFIEQGIDV  242 (401)
T ss_dssp             HHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTT--SCHHHHTHHHHHHHHTTCCC
T ss_pred             HHHh---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccC--CCccccHHHHHHHHhcCCcE
Confidence            8863   2347899999999999999999753   2 468999999999987 33332  111     01    223466


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEe
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      +++.|++|.||  +.|  +|+|++.
T Consensus       243 i~~~S~sK~~~--~~G~RiG~l~~~  265 (401)
T 7aat_A          243 VLSQSYAKNMG--LYGERAGAFTVI  265 (401)
T ss_dssp             EEEEECTTTSC--CGGGCEEEEEEE
T ss_pred             EEEecCCcccc--cccCceEEEEEE
Confidence            89999999999  668  8999974

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.47  E-value=9.4e-12  Score=134.73  Aligned_cols=328  Identities=11%  Similarity=0.082  Sum_probs=192.9

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||..+.      |.-++.+++++.+.+...                    .+ .+.    .-..+...+.+++++
T Consensus        47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~--------------------~~-~~~----~~~~~~~~~la~~l~  101 (452)
T 3n5m_A           47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTL--------------------SY-FPM----SQSHEPAIKLAEKLN  101 (452)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTC--------------------CC-CCT----TSEEHHHHHHHHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc--------------------CC-ccc----ccCCHHHHHHHHHHH
Confidence            46779998766      234788999877643211                    00 000    012245568888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH-----H---cCCEEEEEeccCCc---------c----------------cc-
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE-----K---RGARVMSAEFSWPR---------L----------------RI-  225 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~-----~---~Ga~V~~~~~~~~~---------g----------------~i-  225 (603)
                      ++++.+.+ ++|+.. ++++...+..+.     .   .|.+|...+..+..         +                .+ 
T Consensus       102 ~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (452)
T 3n5m_A          102 EWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVT  180 (452)
T ss_dssp             HHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEEC
T ss_pred             HhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeC
Confidence            99987766 766653 356666566655     2   45566654322110         0                00 


Q ss_pred             ----------C---------HHHHHHHHhhcCCCCCCeeEEEEeCc-ccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454          226 ----------N---------SEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYP----YLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       226 ----------~---------~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa  280 (603)
                                +         .++|++.|....  .+++++|.+... +| ||.+.|    ++.+ ++|+++|+++++|-+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv  257 (452)
T 3n5m_A          181 PPDCYRMPGIERENIYDVECVKEVDRVMTWEL--SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEV  257 (452)
T ss_dssp             CCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC--GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred             CCccccCccCCchhhHHHHHHHHHHHHHHhcC--CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecc
Confidence                      1         789999987210  125788888877 89 999998    8755 589999999999998


Q ss_pred             cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCC
Q 007454          281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCET  357 (603)
Q Consensus       281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~  357 (603)
                      +. .+..  +..++.....+|++++|  |.+|..+..+|++++++++++.+.+....+..                    
T Consensus       258 ~~g~g~~g~~~~~~~~~~~~di~t~s--K~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~--------------------  315 (452)
T 3n5m_A          258 ICGFGRTGKAFGFMNYDVKPDIITMA--KGITSAYLPLSATAVKREIYEAFKGKGEYEFF--------------------  315 (452)
T ss_dssp             TTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSC--------------------
T ss_pred             hhCCCcccccchhhhcCCCCCEEeec--ccccCCCcceEEEEECHHHHHHHhhccCCCCc--------------------
Confidence            76 2221  11233334568998877  87763125689999999887666431000100                    


Q ss_pred             CcccCcccccccccCCC--ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454          358 EPEQTSKSKQEKVAATN--TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT  435 (603)
Q Consensus       358 e~~~~~~~~~~~e~GT~--n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~  435 (603)
                                 +..+|.  |..+.++.               +                         ++++.++.   +
T Consensus       316 -----------~~~~t~~~~~~~~aaa---------------~-------------------------aal~~~~~---~  341 (452)
T 3n5m_A          316 -----------RHINTFGGNPAACALA---------------L-------------------------KNLEIIEN---E  341 (452)
T ss_dssp             -----------CCCCSSTTCHHHHHHH---------------H-------------------------HHHHHHHH---T
T ss_pred             -----------cccCCCCCCHHHHHHH---------------H-------------------------HHHHHHHh---c
Confidence                       011222  22222111               1                         46665543   3


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCC--CCccCH---HHHHHHHhcCCcEEe
Q 007454          436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWK--REKIEP---VLVQKLADRENISLS  510 (603)
Q Consensus       436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~--g~~v~~---~~V~~Lad~~gI~lr  510 (603)
                      .+.++++.+.+++.+.|.++..    +.|.+...     ...|..+.|.+.+..  .+.++.   ..+.+.+.++||.++
T Consensus       342 ~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~-----~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~  412 (452)
T 3n5m_A          342 NLIERSAQMGSLLLEQLKEEIG----EHPLVGDI-----RGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIG  412 (452)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHT----TCTTEEEE-----EESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh----cCCCeEEE-----EEEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEe
Confidence            3455667777777777766411    12223222     124667777764311  111111   124444456799988


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      .+..+..                                  ...+.||+++++..|.|||+++++.|++++.
T Consensus       413 ~~~~~~~----------------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  450 (452)
T 3n5m_A          413 RNGMTTA----------------------------------GYNNILTLAPPLVISSEEIAFVIGTLKTAME  450 (452)
T ss_dssp             ECTTSST----------------------------------TCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             ecCcccC----------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            7644321                                  1126899999999999999999999998875

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.47  E-value=1.9e-12  Score=138.96  Aligned_cols=192  Identities=15%  Similarity=0.111  Sum_probs=119.5

Q ss_pred             CCceeeecCCC---CC---CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI---GL---FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~---tl---~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+.+.   .+   -++.+++++.+.+...         .        + ..+. .     -......+.+++++
T Consensus        27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---------~--------~-~~~~-~-----~~~~~~~~l~~~la   82 (430)
T 3i4j_A           27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL---------P--------F-VHGS-Q-----FSSDVLEEYAGRLA   82 (430)
T ss_dssp             TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC---------C--------C-CCTT-T-----CEEHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc---------c--------c-cccc-c-----cCCHHHHHHHHHHH
Confidence            45679999874   22   3888888876533211         0        0 0000 0     01244567888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC--------------------------c---
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP--------------------------R---  222 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~--------------------------~---  222 (603)
                      +++++++++++|+.. ++++...+..+.+        .|.+|...+..++                          .   
T Consensus        83 ~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (430)
T 3i4j_A           83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPK  162 (430)
T ss_dssp             HHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCE
T ss_pred             HhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceE
Confidence            999998889988764 3455555555542        2445554322110                          0   


Q ss_pred             ---------cccCHHHHHHHHhhcCCCCCCeeEEEEeCccc-ccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC
Q 007454          223 ---------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR-MTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD  286 (603)
Q Consensus       223 ---------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn-~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~  286 (603)
                               +..+.++|++.|....  .+++.+|.+...++ .+|.+.|    ++.+ ++|+++|+++++|-++. .+..
T Consensus       163 ~~~~~~~~~~~~~~~~le~~l~~~~--~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~  240 (430)
T 3i4j_A          163 LPKPDPARNGAEDAEGLRALLEREG--PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRC  240 (430)
T ss_dssp             ECCCCTTSCHHHHHTHHHHHHHHHC--GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             cCCCcccchhhHHHHHHHHHHHhcC--CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcc
Confidence                     1124478888886310  12578888877888 9999888    8755 58999999999998865 3221


Q ss_pred             --CCCCCCC-CCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454          287 --MDSFGLS-LVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV  329 (603)
Q Consensus       287 --m~~ldls-~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~  329 (603)
                        +..++.- ...+|.+++|  |.||  + |   +|++++++++++.+.
T Consensus       241 g~~~~~~~~~~~~~di~t~s--K~l~--~-G~~r~G~~~~~~~i~~~~~  284 (430)
T 3i4j_A          241 GSPLALSRWSGVTPDIAVLG--KGLA--A-GYAPLAGLLAAPQVYETVM  284 (430)
T ss_dssp             SSSSGGGGTTTCCCSEEEEC--GGGT--T-TSSCCEEEEECHHHHHHHH
T ss_pred             cchhhhhhhcCCCCcEEEEc--cccc--C-CccccEEEEECHHHHHHHh
Confidence              1122222 3468998877  9988  3 6   799999887765554

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.46  E-value=3.2e-12  Score=141.02  Aligned_cols=293  Identities=11%  Similarity=0.066  Sum_probs=173.6

Q ss_pred             HHHHHHHHHcC------CCCCcEEEeccCc-hHH----------------------HHHHHHHHcCCEEEEEeccCC-cc
Q 007454          174 AMKKRIMDFLN------ISENDYVYDYESE-AVE----------------------AMIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       174 ~aR~~Ia~~ln------a~~~e~vf~~es~-sV~----------------------~~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      +.|+.|+++++      +++++++++.... ++.                      .....++..|+++..+++++. +.
T Consensus       138 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~  217 (500)
T 3tcm_A          138 GLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGW  217 (500)
T ss_dssp             HHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTS
T ss_pred             HHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCC
Confidence            56777777764      6788887754321 221                      123344566888888887743 23


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC---CCCCCCCC---
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK---DMDSFGLS---  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~---~m~~ldls---  293 (603)
                      .++.++|++.|...+....+++++++...+|.||.++|.+.+    ++|+++|+++++|.+.....   .-...++.   
T Consensus       218 ~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~  297 (500)
T 3tcm_A          218 GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIV  297 (500)
T ss_dssp             BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHH
Confidence            789999999997522222368899999999999999998633    34899999999998754311   00011111   


Q ss_pred             ------CCCCc-EEEEcccccC-CCCCCc--eEEEEE---eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454          294 ------LVRPD-FLICSFYQIF-GENPSG--FGCLFV---KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       294 ------~~~~D-flv~S~hK~f-G~~P~G--~G~L~v---kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                            .-+++ +++.|++|.| |  +.|  +|++++   ++++++.+....                            
T Consensus       298 ~~~~~~~~~~~~i~~~S~SK~~~g--~~G~R~G~~~~~~~~~~~~~~l~~~~----------------------------  347 (500)
T 3tcm_A          298 RSLGYGEEDLPLVSYQSVSKGYYG--ECGKRGGYFEITGFSAPVREQIYKIA----------------------------  347 (500)
T ss_dssp             HHTTCSSSCCCEEEEEESSSTTTC--CGGGCCEEEEEESCCTTHHHHHHHHH----------------------------
T ss_pred             HHhccccCCeEEEEEecCCccCCC--CCccceEEEEEeCCCHHHHHHHHHHH----------------------------
Confidence                  11233 4556999988 7  446  588877   444433222100                            


Q ss_pred             cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454          361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR  440 (603)
Q Consensus       361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r  440 (603)
                              -...+++..+.+++..            .+.             ++....     ...+...+ .++.+.++
T Consensus       348 --------~~~~~~~~~~q~~~~~------------~l~-------------~~~~~~-----~~~~~~~~-~~~~~~~~  388 (500)
T 3tcm_A          348 --------SVNLCSNITGQILASL------------VMN-------------PPKASD-----ESYASYKA-EKDGILAS  388 (500)
T ss_dssp             --------HTTCCCCHHHHHHHHH------------HHS-------------CCCSSS-----THHHHHHH-HHHHHHHH
T ss_pred             --------hcccCCCHHHHHHHHH------------Hhc-------------Cccccc-----hhHHHHHH-HHHHHHHH
Confidence                    0122344444443321            000             000000     01111111 14667778


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE-EEccCCCC-------ccCHH--HHHHHHhcCCcEEe
Q 007454          441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKRE-------KIEPV--LVQKLADRENISLS  510 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF-nv~~~~g~-------~v~~~--~V~~Lad~~gI~lr  510 (603)
                      ++..+++|.+.|.+++        .+.++.|     .++.+.| .+....+.       -+.+.  .+.++++++||.+.
T Consensus       389 l~~~~~~l~~~L~~~~--------g~~~~~~-----~g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~  455 (500)
T 3tcm_A          389 LARRAKALEHAFNKLE--------GITCNEA-----EGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVV  455 (500)
T ss_dssp             HHHHHHHHHHHHHTST--------TEECCCC-----CBTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECE
T ss_pred             HHHHHHHHHHHHhcCC--------CcEEecC-----CeEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEE
Confidence            8888999999998762        2666654     3444444 22211000       01111  24678888999999


Q ss_pred             eCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          511 YGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       511 ~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      .|..|..+                                 .+.+.+|+|++  ++.+||+++++.|++++.+
T Consensus       456 pg~~f~~~---------------------------------~g~~~iRis~~--~~~e~i~~~i~~l~~~~~~  493 (500)
T 3tcm_A          456 PGSGFGQV---------------------------------PGTWHFRCTIL--PQEDKIPAVISRFTVFHEA  493 (500)
T ss_dssp             ESTTTCCC---------------------------------TTCCBEEEESC--SCTTTHHHHHHHHHHHHHH
T ss_pred             eCcccCCC---------------------------------CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence            99777531                                 11257999999  8999999999999998754

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.46  E-value=1.4e-11  Score=132.63  Aligned_cols=195  Identities=11%  Similarity=0.054  Sum_probs=121.7

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+++...      .++.+++++.+.+...                    .+.+    +..-..+..++.+++++
T Consensus        41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--------------------~~~~----~~~~~~~~~~~l~~~la   96 (439)
T 3dxv_A           41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP--------------------AGAT----ILSASNAPAVTLAERLL   96 (439)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC--------------------SCSC----SSSSEEHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc--------------------cCcc----ccccCCHHHHHHHHHHH
Confidence            4577999987766      6788888876543211                    0000    00012356678999999


Q ss_pred             HHcCCCC-CcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccC----------------------------------Cc
Q 007454          181 DFLNISE-NDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSW----------------------------------PR  222 (603)
Q Consensus       181 ~~lna~~-~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~----------------------------------~~  222 (603)
                      ++++... ++++|... ++++...+..++.  .+.+|...+..+                                  +.
T Consensus        97 ~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (439)
T 3dxv_A           97 ASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP  176 (439)
T ss_dssp             HTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC
T ss_pred             HhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc
Confidence            9998766 57777653 3455555555422  334554332111                                  00


Q ss_pred             c-cc-----CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC--CC
Q 007454          223 L-RI-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD--MD  288 (603)
Q Consensus       223 g-~i-----~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~--m~  288 (603)
                      . ..     +.++|+++|..  ...+++++|.+...+|.+|.+.|    ++.+ ++|+++|+++++|.++. .+..  +.
T Consensus       177 ~~~~~~~~~d~~~le~~l~~--~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~  254 (439)
T 3dxv_A          177 YRNDPTGDAILTLLTEKLAA--VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH  254 (439)
T ss_dssp             BTTBTTSHHHHHHHHHHHHT--SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS
T ss_pred             ccccccHHHHHHHHHHHHHh--cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh
Confidence            0 00     47889998841  11246888888888999999999    8865 58999999999999875 2110  11


Q ss_pred             CCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          289 SFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       289 ~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      .++.....+|++++  -|.||. ...+|+++.++++++.+.+
T Consensus       255 ~~~~~~~~~di~s~--sK~~~~-G~riG~~~~~~~~~~~~~~  293 (439)
T 3dxv_A          255 CFEHEGFVPDILVL--GKGLGG-GLPLSAVIAPAEILDCASA  293 (439)
T ss_dssp             GGGGTTCCCSEEEE--CGGGGT-TSCCEEEEEEHHHHTSCSS
T ss_pred             HHHhcCCCCCEEEE--cchhcC-CcceEEEEECHHHHhhhcC
Confidence            23333456898855  498882 2247999999877655543

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.45  E-value=8.2e-12  Score=136.80  Aligned_cols=214  Identities=15%  Similarity=0.158  Sum_probs=133.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCCCCC-CCCCCCC--
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKDMDS-FGLSLVR--  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~m~~-ldls~~~--  296 (603)
                      +.++|+++|........++++|++..++|++|.+.|    ++.+ ++|+++|+++++|.+|. ++.. .. +.+..++  
T Consensus       241 d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~-g~~~~~~~~gv~  319 (472)
T 1ohv_A          241 CLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST-GKFWAHEHWGLD  319 (472)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT-SSSSGGGGGCCS
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC-CCchhccccCCC
Confidence            467788888641100115889999888888999888    7755 48999999999999997 3441 11 3444444  


Q ss_pred             --CcEEEEccccc-CCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          297 --PDFLICSFYQI-FGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       297 --~Dflv~S~hK~-fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                        ||++++|  |. +|    | |+ ++++.+. .+.+..                                     ..+|
T Consensus       320 ~~~Di~t~s--K~~l~----G-G~-~~~~~~~-~~~~~~-------------------------------------~~~T  353 (472)
T 1ohv_A          320 DPADVMTFS--KKMMT----G-GF-FHKEEFR-PNAPYR-------------------------------------IFNT  353 (472)
T ss_dssp             SCCSEEEEC--GGGSS----E-EE-EECGGGS-CSSSSS-------------------------------------SCCS
T ss_pred             CCCCEEEEc--ccccc----C-Cc-cCchhhc-cccccc-------------------------------------ccCc
Confidence              8999888  97 56    3 44 4443321 111110                                     1233


Q ss_pred             --CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          374 --NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       374 --~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                        .|..+.++..                                        ++|+.+.+   +.+.++++.+.++|.++
T Consensus       354 ~~~~~~~~aaa~----------------------------------------aal~~~~~---~~~~~~~~~~~~~l~~~  390 (472)
T 1ohv_A          354 WLGDPSKNLLLA----------------------------------------EVINIIKR---EDLLSNAAHAGKVLLTG  390 (472)
T ss_dssp             SSSCHHHHHHHH----------------------------------------HHHHHHHH---TTHHHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHH----------------------------------------HHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence              2333333322                                        57776655   24567888999999999


Q ss_pred             HhcC--CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          452 LMKL--QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       452 L~~L--~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                      |.++  +++.     .+.-.     ...+.++.|.+.+.   .....+..+|+ ++||.++.+                 
T Consensus       391 L~~l~~~~~~-----~v~~~-----~~~g~~~~~~~~~~---~~~~~~~~~l~-~~Gv~~~~~-----------------  439 (472)
T 1ohv_A          391 LLDLQARYPQ-----FISRV-----RGRGTFCSFDTPDE---SIRNKLISIAR-NKGVMLGGC-----------------  439 (472)
T ss_dssp             HHHHHHHCTT-----TCEEE-----EEETTEEEEECSSH---HHHHHHHHHHH-HTTEECEEE-----------------
T ss_pred             HHHHHhhCCC-----cEEee-----cCCceEEEEEeCCh---hHHHHHHHHHH-HCCeEEecC-----------------
Confidence            9876  2221     12111     12477888876531   11122344444 468876531                 


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                             +.++||+|+++.+|.+||+++++.|++++..
T Consensus       440 -----------------------g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  470 (472)
T 1ohv_A          440 -----------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  470 (472)
T ss_dssp             -----------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                                   1258999999999999999999999988753

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.44  E-value=6.2e-12  Score=135.14  Aligned_cols=189  Identities=14%  Similarity=0.102  Sum_probs=124.2

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||++++..      .++.+++++.+.+....                 ..+.          ......+.+++++
T Consensus        53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-----------------~~~~----------~~~~~~~l~~~la  105 (434)
T 3l44_A           53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGV-----------------LYGT----------PTALEVKFAKMLK  105 (434)
T ss_dssp             TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCS-----------------CCSS----------CCHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCc-----------------CCCC----------CCHHHHHHHHHHH
Confidence            5678999987642      48888888765332100                 0000          1234456788899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCCc----------------------cc-----------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWPR----------------------LR-----------  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~~----------------------g~-----------  224 (603)
                      ++++ .+++++|... ++++...+..+..  .+.+|...+..+..                      +.           
T Consensus       106 ~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  184 (434)
T 3l44_A          106 EAMP-ALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV  184 (434)
T ss_dssp             HHCT-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEE
T ss_pred             HhCC-CCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEec
Confidence            9998 6778888753 4566666666554  45566654322110                      00           


Q ss_pred             --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454          225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL  294 (603)
Q Consensus       225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~  294 (603)
                        -+.++|+++|...   .+++.+|.+...++.+|.+.|    ++.+ ++|+++|+++++|.++..   ++ +..++...
T Consensus       185 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~-~~~~~~~~  260 (434)
T 3l44_A          185 PFNNVETLKEALDKW---GHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMY-GGAQDLLG  260 (434)
T ss_dssp             CTTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSS-SCHHHHHT
T ss_pred             CcccHHHHHHHHHhC---CCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccc-cHHHHHcC
Confidence              0788999988731   125788888888899999998    8866 589999999999999863   22 01122223


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ..+|++++|  |.||. +..+|+++.++++++.+.+
T Consensus       261 ~~~di~t~s--K~~~~-G~~iG~~~~~~~i~~~~~~  293 (434)
T 3l44_A          261 VTPDLTALG--KVIGG-GLPIGAYGGKKEIMEQVAP  293 (434)
T ss_dssp             CCCSEEEEE--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred             CCCCeeehh--hhhcC-CcCeeeEEEcHHHHHhhcc
Confidence            468988776  98874 5679999998887765553

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.42  E-value=8.1e-12  Score=133.96  Aligned_cols=189  Identities=15%  Similarity=0.137  Sum_probs=123.2

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+.+...      -++.+++++.+.+...           .      +++.          ......+.+++++
T Consensus        50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----------~------~~~~----------~~~~~~~la~~l~  102 (427)
T 3fq8_A           50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG-----------T------SFGA----------PCALENVLAEMVN  102 (427)
T ss_dssp             TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC-----------S------CCSS----------CCHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhC-----------C------CcCC----------CCHHHHHHHHHHH
Confidence            4678999987642      3888999877643211           0      0011          1244567888899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCCc-----------cc----------c-----------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWPR-----------LR----------I-----------  225 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~~-----------g~----------i-----------  225 (603)
                      ++++ .+++++|... ++++...+..++.  .+-+|...+..+..           +.          +           
T Consensus       103 ~~~~-~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (427)
T 3fq8_A          103 DAVP-SIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTT  181 (427)
T ss_dssp             HHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEE
T ss_pred             HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeec
Confidence            9998 6778887754 3455555544432  33466654432210           00          1           


Q ss_pred             ---CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454          226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL  294 (603)
Q Consensus       226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~  294 (603)
                         +.++|+++|...   ..++++|.+...+|.+|.+.|    ++.+ ++|+++|+++++|.++.+   ++ +...+...
T Consensus       182 ~~~d~~~le~~l~~~---~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~  257 (427)
T 3fq8_A          182 PYNDLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAY-GGVQEKFG  257 (427)
T ss_dssp             ETTCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBT-THHHHHTT
T ss_pred             CCCCHHHHHHHHHhC---CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chhhHhcC
Confidence               788999998752   136888888888899999999    8865 589999999999999872   21 01122233


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ..+|++++|  |.||. -..+|+++.++++++.+.+
T Consensus       258 ~~~di~t~s--K~~~~-G~~~G~~~~~~~~~~~~~~  290 (427)
T 3fq8_A          258 VTPDLTTLG--KIIGG-GLPVGAYGGKREIMQLVAP  290 (427)
T ss_dssp             CCCSEEEEC--GGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred             CCCChhhhh--hhhhC-CcceEEEEEcHHHHHhhcc
Confidence            468998887  99982 1229999998887765653

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.42  E-value=1.5e-13  Score=145.25  Aligned_cols=183  Identities=15%  Similarity=0.098  Sum_probs=116.4

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na  185 (603)
                      ..-.|+|..+..+.++.+.+++.+.+...                        ..+.|+.  .....+.|++|++++ +.
T Consensus        32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~--~~g~~~lr~~la~~~~~~   85 (394)
T 2ay1_A           32 GVGVYKDATGHTPIMRAVHAAEQRMLETE------------------------TTKTYAG--LSGEPEFQKAMGELILGD   85 (394)
T ss_dssp             CCCSCCCTTSCCCCCHHHHHHHHHHHHHC------------------------CCCCCCC--SSCCHHHHHHHHHHHHGG
T ss_pred             ccceeeCCCCCccCcHHHHHHHHHhcCCc------------------------ccCCCCC--CCCcHHHHHHHHHHHhCC
Confidence            33467777777788888988876532100                        0000100  001247888888887 55


Q ss_pred             --CCCcEEE--eccC-chHHH-----------------------HHHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhh
Q 007454          186 --SENDYVY--DYES-EAVEA-----------------------MIRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVS  236 (603)
Q Consensus       186 --~~~e~vf--~~es-~sV~~-----------------------~~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~  236 (603)
                        ++++++|  +... +++..                       ....++..|+++..++.+. .++.++.++|++.|..
T Consensus        86 ~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~  165 (394)
T 2ay1_A           86 GLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA  165 (394)
T ss_dssp             GCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHT
T ss_pred             CCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHh
Confidence              6778877  4321 12222                       2223344577777777641 2467899999999974


Q ss_pred             cCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCCC-----CCCCC-CCCCCCc-EEEEccc
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPKD-----MDSFG-LSLVRPD-FLICSFY  305 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~~-----m~~ld-ls~~~~D-flv~S~h  305 (603)
                      .   .+++.+++++..+|.||.++|.+.    +++|+++|+++++|.++.....     ..++. +...+.| +++.|++
T Consensus       166 ~---~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s  242 (394)
T 2ay1_A          166 A---KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCS  242 (394)
T ss_dssp             C---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECT
T ss_pred             C---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEecc
Confidence            2   124788999999999999999763    3468999999999999865320     01222 2223444 6688999


Q ss_pred             ccCCCCCCce--EEEEE
Q 007454          306 QIFGENPSGF--GCLFV  320 (603)
Q Consensus       306 K~fG~~P~G~--G~L~v  320 (603)
                      |+||  +.|+  |++++
T Consensus       243 K~~~--~~G~riG~~~~  257 (394)
T 2ay1_A          243 KNFG--IYRERTGCLLA  257 (394)
T ss_dssp             TTTT--CGGGCEEEEEE
T ss_pred             CCCc--CcCCccceEEE
Confidence            9999  6684  99998

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.41  E-value=1.9e-12  Score=137.82  Aligned_cols=184  Identities=8%  Similarity=-0.114  Sum_probs=115.0

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc-CC
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL-NI  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l-na  185 (603)
                      ..-+|+|..+..+.++.+.+++.+.+....                       ..+.|+.  ..-..+.|+.|++++ +.
T Consensus        36 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-----------------------~~~~y~~--~~g~~~lr~~la~~~~~~   90 (412)
T 1ajs_A           36 GVGAYRTDDCQPWVLPVVRKVEQRIANNSS-----------------------LNHEYLP--ILGLAEFRTCASRLALGD   90 (412)
T ss_dssp             CSCCCCCTTSCCCCCHHHHHHHHHHHTCTT-----------------------CCCCCCC--TTCCHHHHHHHHHHHHCT
T ss_pred             ccceecCCCCCccccHHHHHHHHHhhhChh-----------------------hccCCCC--CCCCHHHHHHHHHHHhcC
Confidence            445788888888888899888765431100                       0000100  011246788888887 43


Q ss_pred             -----CCCcEEE--eccC-chHHHH----------------------------HHHHHHcCCE-EEEEeccC-CccccCH
Q 007454          186 -----SENDYVY--DYES-EAVEAM----------------------------IRTSEKRGAR-VMSAEFSW-PRLRINS  227 (603)
Q Consensus       186 -----~~~e~vf--~~es-~sV~~~----------------------------~~~a~~~Ga~-V~~~~~~~-~~g~i~~  227 (603)
                           +++++++  +... +++..+                            ...++..|++ +..++.+. .+..++.
T Consensus        91 ~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~  170 (412)
T 1ajs_A           91 DSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDL  170 (412)
T ss_dssp             TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECH
T ss_pred             CCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCH
Confidence                 5677776  4321 122221                            2223345666 66666521 2456889


Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEecccc-CCCC-----CCCCC-CCCC-
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACAL-GPKD-----MDSFG-LSLV-  295 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~-~~~~-----m~~ld-ls~~-  295 (603)
                      ++|++.|...   ++++.+++++..+|.||.++|.+.    +++|+++|+++++|.+.. .+.+     +.++. +... 
T Consensus       171 ~~l~~~l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~  247 (412)
T 1ajs_A          171 QGFLSDLENA---PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEG  247 (412)
T ss_dssp             HHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTT
T ss_pred             HHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccC
Confidence            9999998742   235789999999999999999763    346889999999999843 3221     00121 2111 


Q ss_pred             CCcEEEEcccccCCCCCCc--eEEEEE
Q 007454          296 RPDFLICSFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G--~G~L~v  320 (603)
                      .-++++.|++|.||  |.|  +|++++
T Consensus       248 ~~~i~~~s~sK~~~--~~G~riG~~~~  272 (412)
T 1ajs_A          248 FELFCAQSFSKNFG--LYNERVGNLTV  272 (412)
T ss_dssp             CCEEEEEECTTTSC--CGGGCEEEEEE
T ss_pred             CcEEEEEecccccC--CCCcceEEEEE
Confidence            22388999999999  778  799998

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.40  E-value=5.8e-12  Score=134.28  Aligned_cols=275  Identities=11%  Similarity=0.030  Sum_probs=168.4

Q ss_pred             HHHHHHHHHHcCC-----CC-CcEEEeccC-chHHHHHHHHHHcCC----EEEEEeccCCccccCHHHHHHHH-------
Q 007454          173 SAMKKRIMDFLNI-----SE-NDYVYDYES-EAVEAMIRTSEKRGA----RVMSAEFSWPRLRINSEKLRKMV-------  234 (603)
Q Consensus       173 ~~aR~~Ia~~lna-----~~-~e~vf~~es-~sV~~~~~~a~~~Ga----~V~~~~~~~~~g~i~~~~L~~~l-------  234 (603)
                      .+.|+.|+++++.     ++ ++++++..+ +++..++....+.|.    +|......|+..    ..+-+..       
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~----~~~~~~~g~~~~~~  146 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTY----VEETTYVRSGMYKW  146 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHH----HHHHHTTCBTTEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhH----HHHHHHcCCeEEEe
Confidence            5789999999883     34 688887654 355555565566787    776665554321    0000000       


Q ss_pred             --hhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          235 --VSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       235 --~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                        ..+.-..++++++.++..+|.||.+++ ++++.++.++++|++|.++..++ ..++.. ..+.++++.|++|.||  +
T Consensus       147 ~~d~~~l~~~~~k~v~l~~p~NPtG~~~~-~l~~~~~~~~~~ii~De~y~~~~-~~~l~~-~~~~~i~~~S~SK~~g--~  221 (391)
T 3bwn_A          147 EGDAWGFDKKGPYIELVTSPNNPDGTIRE-TVVNRPDDDEAKVIHDFAYYWPH-YTPITR-RQDHDIMLFTFSKITG--H  221 (391)
T ss_dssp             EEESTTCCCCSCEEEEEESSCTTTCCCCC-CCC-----CCCEEEEECTTCSTT-TSCCCC-CBCCSEEEEEHHHHHS--C
T ss_pred             cCCHHHcCCCCCEEEEECCCCCCCchhHH-HHHHHhhcCCCEEEEeCCCCCCC-CCcccc-CCCCeEEEEechhhcC--C
Confidence              000001246899999999999999997 33232233449999999887543 124543 4567899999999999  6


Q ss_pred             Cce--EEEEE-eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCc
Q 007454          313 SGF--GCLFV-KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGK  389 (603)
Q Consensus       313 ~G~--G~L~v-kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~  389 (603)
                      .|+  |.+++ ++++++.+....                                .   ....+.+..+..++.      
T Consensus       222 ~GlRiG~~~~~~~~l~~~l~~~~--------------------------------~---~~~~~~~~~~q~a~~------  260 (391)
T 3bwn_A          222 AGSRIGWALVKDKEVAKKMVEYI--------------------------------I---VNSIGVSKESQVRTA------  260 (391)
T ss_dssp             GGGCEEEEEECCHHHHHHHHHHH--------------------------------H---HHHSSCCHHHHHHHH------
T ss_pred             CccceEEEEecCHHHHHHHHHHh--------------------------------c---ccccCCCHHHHHHHH------
Confidence            685  99998 444433232100                                0   011223333322222      


Q ss_pred             cccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH---------hcCHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 007454          390 LEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD---------SLGLTMISRRGRCLINWLVNALMKLQHPNT  460 (603)
Q Consensus       390 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~---------~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~  460 (603)
                                                        .+++...         .-.++.+.++.+..++++.+.|.+++    
T Consensus       261 ----------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----  302 (391)
T 3bwn_A          261 ----------------------------------KILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESD----  302 (391)
T ss_dssp             ----------------------------------HHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCS----
T ss_pred             ----------------------------------HHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence                                              2333221         12367778888899999999998752    


Q ss_pred             CCCceEEEeCCCCC---------CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          461 EGNALVKIYGPKIR---------FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       461 ~g~plv~Iygp~~~---------~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                          .+++++|...         ...|..+-+.+++  ++     .+..+++++||.++.|..|..              
T Consensus       303 ----~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~-----~~~~~l~~~gV~v~pg~~fg~--------------  357 (391)
T 3bwn_A          303 ----AFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ET-----DLVSELRRHKVMSRAGERCGS--------------  357 (391)
T ss_dssp             ----SEECCCCCCEEETTTTEEECCCCSEEEEEESS--SC-----CHHHHHHHTTEECEEGGGGTC--------------
T ss_pred             ----CcccccCCccccccccccCCCcceEEEecCCc--HH-----HHHHHHHHCCEEEccCCCCCC--------------
Confidence                2666655311         1223356677764  22     366777889999999877621              


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                           ..+.||+|++  ++.++++++++.|++++.+
T Consensus       358 ---------------------~~~~iRis~~--~~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          358 ---------------------DKKHVRVSML--SREDVFNVFLERLANMKLI  386 (391)
T ss_dssp             ---------------------CTTEEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred             ---------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence                                 1258999999  4899999999999887643

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.40  E-value=3.1e-12  Score=135.06  Aligned_cols=182  Identities=15%  Similarity=0.083  Sum_probs=120.7

Q ss_pred             CceeeecCCCCCCCHHHHHHHhc-CCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC-
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQES-SPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI-  185 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~-~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna-  185 (603)
                      --+|+|+.+.++.++.+++++.+ .+.....           +    .+..+     .|      ..+.|+.|+++++. 
T Consensus        33 ~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~-----------~----~y~~~-----~g------~~~lr~~la~~~~~~   86 (397)
T 3fsl_A           33 IGLYYNEDGIIPQLQAVAEAEARLNAQPHGA-----------S----LYLPM-----EG------LNCYRHAIAPLLFGA   86 (397)
T ss_dssp             SCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC-----------C----CCCCT-----TC------CHHHHHHHHHHHHCT
T ss_pred             eeEEECCCCCccCcHHHHHHHHhhccCcccc-----------c----cCCCC-----Cc------hHHHHHHHHHHHhcC
Confidence            34689999999999999999876 4431100           0    00100     01      23678888888864 


Q ss_pred             -----CCC--cEEEeccC-chH-----------------------HHHHHHHHHcCCEEEEEecc-CCccccCHHHHHHH
Q 007454          186 -----SEN--DYVYDYES-EAV-----------------------EAMIRTSEKRGARVMSAEFS-WPRLRINSEKLRKM  233 (603)
Q Consensus       186 -----~~~--e~vf~~es-~sV-----------------------~~~~~~a~~~Ga~V~~~~~~-~~~g~i~~~~L~~~  233 (603)
                           +++  +++++... +++                       ......++..|+++..++.. ..++.++.++|++.
T Consensus        87 ~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~  166 (397)
T 3fsl_A           87 DHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLAT  166 (397)
T ss_dssp             TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHH
T ss_pred             CcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHH
Confidence                 566  77765322 121                       22233456678888888872 13578899999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccCCCCCC------CC-CC-CCCCCcEEE
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALGPKDMD------SF-GL-SLVRPDFLI  301 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~~~~m~------~l-dl-s~~~~Dflv  301 (603)
                      |...   ++++++++++..+|.||.++|.+.   + ++|+++|+++++|.+...... .      ++ .+ ...+.++++
T Consensus       167 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~  242 (397)
T 3fsl_A          167 LKTL---QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGA-GMEEDAYAIRAIASAGLPALVS  242 (397)
T ss_dssp             HTTC---CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSS-CTTGGGHHHHHHHHTTCCEEEE
T ss_pred             HHhC---CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhcc-CcccccHHHHHHHhcCCCEEEE
Confidence            9742   246899999999999999998863   3 468899999999987543220 0      00 01 123456888


Q ss_pred             EcccccCCCCCCc--eEEEEEe
Q 007454          302 CSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       302 ~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      .|+.|.||  +.|  +|++++.
T Consensus       243 ~S~SK~~~--~~G~riG~~~~~  262 (397)
T 3fsl_A          243 NSFSKIFS--LYGERVGGLSVM  262 (397)
T ss_dssp             EECTTTTT--CGGGCCEEEEEE
T ss_pred             eccccccc--CcCCCeeEEEEe
Confidence            99999999  668  7888764

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.40  E-value=1.4e-11  Score=133.91  Aligned_cols=196  Identities=14%  Similarity=0.125  Sum_probs=121.8

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|||..+.      |.-++.+++++.+.+....                  ..+....     -..+...+.+++++
T Consensus        48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------------------~~~~~~~-----~~~~~~~~la~~l~  104 (459)
T 4a6r_A           48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP------------------FYNTFFK-----TTHPAVVELSSLLA  104 (459)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS------------------CCCTTSS-----SCCHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcc------------------ccccccc-----cCCHHHHHHHHHHH
Confidence            56789999875      2347888888765432110                  0000000     01245568888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCCc-----------------------c--c--
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWPR-----------------------L--R--  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~~-----------------------g--~--  224 (603)
                      ++++.+.++++|... ++++...+..+.+        .+.+|......+..                       +  .  
T Consensus       105 ~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (459)
T 4a6r_A          105 EVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIE  184 (459)
T ss_dssp             HHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEEC
T ss_pred             HhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeC
Confidence            999988888888764 4566666666654        34556543211110                       0  0  


Q ss_pred             ----------cC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccc
Q 007454          225 ----------IN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       225 ----------i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq  281 (603)
                                ++        .++|+++|....  .+++.+|.+...++.+|.+.|    ++.+ ++|+++|+++++|-++
T Consensus       185 ~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~  262 (459)
T 4a6r_A          185 QPWWYKHGKDMTPDEFGVVAARWLEEKILEIG--ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVI  262 (459)
T ss_dssp             CCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCccccCCcccCHHHHHHHHHHHHHHHHHHcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence                      12        678888886311  125788888778888999888    8755 5899999999999886


Q ss_pred             c-CCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          282 L-GPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       282 ~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      . .+..  +..++.....||++++|  |.+|+..-.+|++++++++++.+.
T Consensus       263 ~g~gr~G~~~~~~~~~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~  311 (459)
T 4a6r_A          263 CGFGRTGEWFGHQHFGFQPDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLI  311 (459)
T ss_dssp             TTTTTTSSSSHHHHHTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHHHHH
T ss_pred             cCCCcccccchHhhcCCCCCeeehh--hhhcCCCCCccceeeCHHHHHHhh
Confidence            6 2221  11122223568999887  977631135799999887765444

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.39  E-value=2e-11  Score=133.17  Aligned_cols=317  Identities=12%  Similarity=0.052  Sum_probs=192.5

Q ss_pred             CCc--eeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHH
Q 007454          107 SNH--TCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKR  178 (603)
Q Consensus       107 ~~~--vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~  178 (603)
                      ++.  -|||..+.      |.-++.+++++.+.+....                 +..       ++.-..+...+.+++
T Consensus        71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-----------------~~~-------~~~~~~~~~~~L~e~  126 (457)
T 3tfu_A           71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-----------------HVM-------FGGLTHEPAARLAKL  126 (457)
T ss_dssp             TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-----------------CCC-------SSSEECHHHHHHHHH
T ss_pred             CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-----------------Ccc-------ccccCCHHHHHHHHH
Confidence            456  89998874      3457888888765432110                 000       000122455689999


Q ss_pred             HHHHcCCCCCcEEEecc-CchHHHHHHHHHH-------cCC-EEEEEeccC-----------------------------
Q 007454          179 IMDFLNISENDYVYDYE-SEAVEAMIRTSEK-------RGA-RVMSAEFSW-----------------------------  220 (603)
Q Consensus       179 Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~-------~Ga-~V~~~~~~~-----------------------------  220 (603)
                      ++++++...++++|... ++++...+..+.+       .|- +|...+..+                             
T Consensus       127 la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (457)
T 3tfu_A          127 LVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQV  206 (457)
T ss_dssp             HHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCE
T ss_pred             HHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCce
Confidence            99999887788877754 3466655555543       232 444321100                             


Q ss_pred             ----Cc---cccCHHHHHHHHhhcCCCCCCeeEEEEeC-cccccccccc----HHHH-HHHHhCCcEEEEecccc-CCCC
Q 007454          221 ----PR---LRINSEKLRKMVVSKGKKKKQRGLFVFPL-HSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GPKD  286 (603)
Q Consensus       221 ----~~---g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~-~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~~~  286 (603)
                          +.   ...+.++|++.|...   .+++++|.+.. .+|.+|.+.|    ++.+ ++|+++|+++++|-+|. .+..
T Consensus       207 ~~~~p~~~~~~~d~~~le~~l~~~---~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~  283 (457)
T 3tfu_A          207 FAPQVPRDYDPAYSAAFEAQLAQH---AGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRT  283 (457)
T ss_dssp             EECCCCSSCCHHHHHHHHHHHHHH---GGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTT
T ss_pred             EecCCCcccCHHHHHHHHHHHHhC---CCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccc
Confidence                00   013678888888731   12578888888 9999999987    7755 48999999999999876 2221


Q ss_pred             --CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCc
Q 007454          287 --MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTS  363 (603)
Q Consensus       287 --m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~  363 (603)
                        +..++.....||++++|  |.+|+ . -.+|+++.++++++.+..... |..                          
T Consensus       284 G~~~a~~~~~~~pdiit~s--K~l~g-G~~~lG~v~~~~~i~~~~~~~~~-~~~--------------------------  333 (457)
T 3tfu_A          284 GALFAADHAGVSPDIMCVG--KALTG-GYLSLAATLCTADVAHTISAGAA-GAL--------------------------  333 (457)
T ss_dssp             SSSSTHHHHTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHHHHHSSS-CSC--------------------------
T ss_pred             cchhHhHhcCCCceEEEEC--hhhhC-CCcceEEEEEcHHHHHHhhccCC-Cce--------------------------
Confidence              11222224569999776  87763 2 258999999887655521000 100                          


Q ss_pred             ccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHH
Q 007454          364 KSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRG  441 (603)
Q Consensus       364 ~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~  441 (603)
                           .-.+|  .|..+.++.               +                         ++|+.+.+   +.+.+++
T Consensus       334 -----~~~~t~~~n~~a~aaa---------------~-------------------------aaL~~~~~---~~~~~~~  365 (457)
T 3tfu_A          334 -----MHGPTFMANPLACAVS---------------V-------------------------ASVELLLG---QDWRTRI  365 (457)
T ss_dssp             -----CCCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHT---SCHHHHH
T ss_pred             -----eEecCCCcCHHHHHHH---------------H-------------------------HHHHHHhh---hHHHHHH
Confidence                 00111  122222111               1                         46666544   3456778


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCc
Q 007454          442 RCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSD  521 (603)
Q Consensus       442 ~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~  521 (603)
                      +.+.+++.++|.++..     .|.+...     ...|.++.|.+.+.    .+...+.+.+.++||.++..         
T Consensus       366 ~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~l~~~----~~~~~~~~~l~~~Gv~v~~~---------  422 (457)
T 3tfu_A          366 TELAAGLTAGLDTARA-----LPAVTDV-----RVCGAIGVIECDRP----VDLAVATPAALDRGVWLRPF---------  422 (457)
T ss_dssp             HHHHHHHHHHHGGGGG-----STTEEEE-----EECSSCEEEEESSC----CCHHHHHHHHHHTTEECCCB---------
T ss_pred             HHHHHHHHHHHHHHhc-----CCCeeee-----ecCCeEEEEEECCc----ccHHHHHHHHHHCCeEEEec---------
Confidence            8888999999988741     2324221     12467888888653    22233444334468877521         


Q ss_pred             hhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          522 KYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       522 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                      ...+|+++.+..|.|||+++++.|++++.+
T Consensus       423 --------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~  452 (457)
T 3tfu_A          423 --------------------------------RNLVYAMPPYICTPAEITQITSAMVEVARL  452 (457)
T ss_dssp             --------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence                                            148999999999999999999999998864

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.39  E-value=2.8e-11  Score=129.93  Aligned_cols=189  Identities=13%  Similarity=0.091  Sum_probs=122.2

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+.++..      -++.+++++.+.+...        +         .++.+          .....+.+++++
T Consensus        51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~--------~---------~~~~~----------~~~~~~la~~l~  103 (429)
T 4e77_A           51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG--------L---------SFGAP----------TEMEVKMAQLVT  103 (429)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC--------S---------CCSSC----------CHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC--------c---------ccCCC----------CHHHHHHHHHHH
Confidence            5678999987653      4788999887643211        0         00111          234567888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccC----------------------Cccc-----------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSW----------------------PRLR-----------  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~----------------------~~g~-----------  224 (603)
                      ++++ .+++++|... ++++...+..++.  .+.+|...+..+                      ..+.           
T Consensus       104 ~~~~-~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (429)
T 4e77_A          104 DLVP-TMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTC  182 (429)
T ss_dssp             HHST-TCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEE
T ss_pred             hhCC-CCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeec
Confidence            9998 5778877753 3466555555442  344554421110                      0000           


Q ss_pred             --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc---CCCCCCCCCCCC
Q 007454          225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL---GPKDMDSFGLSL  294 (603)
Q Consensus       225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~---~~~~m~~ldls~  294 (603)
                        -+.++|+++|...   .+++.+|.+...++.+|.+.|    ++.+ ++|+++|+++++|.++.   .++ +..++.-.
T Consensus       183 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~-~~~~~~~~  258 (429)
T 4e77_A          183 TYNDLASVRQAFEQY---PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVAL-AGAQDYYH  258 (429)
T ss_dssp             CTTCHHHHHHHHHHS---TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBT-TCHHHHTT
T ss_pred             CCCCHHHHHHHHHhc---CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCc-chHHHhcC
Confidence              1788999998742   136888888888888999999    8865 58999999999999987   232 11122223


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ..||++++|  |.||. ...+|+++.++++++.+.+
T Consensus       259 ~~pdi~t~s--K~~~~-G~~~G~~~~~~~~~~~l~~  291 (429)
T 4e77_A          259 VIPDLTCLG--KIIGG-GMPVGAFGGRREVMNALAP  291 (429)
T ss_dssp             CCCSEEEEE--GGGGT-TSCCEEEEECHHHHTTBTT
T ss_pred             CCCCeeeec--ccccC-CCCeEEEEECHHHHHHhcc
Confidence            467987666  98874 4568999998887665553

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.39  E-value=4.5e-11  Score=130.96  Aligned_cols=321  Identities=13%  Similarity=0.095  Sum_probs=189.5

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      ++.-|||+.+.      |.-++.+++++.+.+....                  .......     -......+.+++++
T Consensus        53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~------------------~~~~~~~-----~~~~~~~~lae~l~  109 (472)
T 3hmu_A           53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP------------------YYNTFFK-----TTHVPAIALAQKLA  109 (472)
T ss_dssp             TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS------------------CCCSSSS-----EECHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc------------------ccccccc-----cCCHHHHHHHHHHH
Confidence            56789999764      3457889888765432110                  0000000     01244567888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccCC------------------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSWP------------------------------  221 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~~------------------------------  221 (603)
                      ++++.+.++++|... ++++...++.+++        .+-+|....-.+.                              
T Consensus       110 ~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~  189 (472)
T 3hmu_A          110 ELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQ  189 (472)
T ss_dssp             HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECC
T ss_pred             HhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCC
Confidence            999877777777653 4566666666654        2344543221110                              


Q ss_pred             -c-cc----cC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc
Q 007454          222 -R-LR----IN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       222 -~-g~----i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~  282 (603)
                       . .+    .+        .++|++.|....  .+++.+|.+-..++.+|.+.|    ++.+ ++|+++|+++++|-++.
T Consensus       190 p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~  267 (472)
T 3hmu_A          190 PNWWAEGGDMDPEEFGLARARELEEAILELG--ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC  267 (472)
T ss_dssp             CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CccccCCcccCHHHHHHHHHHHHHHHHHhcC--CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc
Confidence             0 00    12        678888886311  135788888778899999998    7755 58999999999998876


Q ss_pred             -CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCC
Q 007454          283 -GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETE  358 (603)
Q Consensus       283 -~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e  358 (603)
                       .+..  +...+.....||++++|  |.+|+ . -.+|++++++++++.+.+..+.                        
T Consensus       268 gfgr~G~~~a~~~~~v~pdi~t~s--K~l~g-g~~plG~v~~~~~i~~~~~~~~~~------------------------  320 (472)
T 3hmu_A          268 GFGRTGNWFGTQTMGIRPHIMTIA--KGLSS-GYAPIGGSIVCDEVAHVIGKDEFN------------------------  320 (472)
T ss_dssp             TTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHHTTSCBC------------------------
T ss_pred             CCcccCccchhHHhCCCCceeeec--hhhhc-CCcceEEEEECHHHHHhcccCCcc------------------------
Confidence             3221  11112223469999888  97763 2 2469999998887656321000                        


Q ss_pred             cccCcccccccccCC--CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHH
Q 007454          359 PEQTSKSKQEKVAAT--NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTM  436 (603)
Q Consensus       359 ~~~~~~~~~~~e~GT--~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~  436 (603)
                                 -.+|  .|..+.++.               +                         ++|+.+++   +.
T Consensus       321 -----------~~~t~~~np~a~aAa---------------~-------------------------aaL~~~~~---~~  346 (472)
T 3hmu_A          321 -----------HGYTYSGHPVAAAVA---------------L-------------------------ENLRILEE---EN  346 (472)
T ss_dssp             -----------CCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHH---TT
T ss_pred             -----------ccCCCCCCHHHHHHH---------------H-------------------------HHHHHHHH---hH
Confidence                       0111  122221111               1                         46666544   34


Q ss_pred             HHHHHH-HHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCC--ccC------HHHHHHHHhcCCc
Q 007454          437 ISRRGR-CLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKRE--KIE------PVLVQKLADRENI  507 (603)
Q Consensus       437 i~~r~~-~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~--~v~------~~~V~~Lad~~gI  507 (603)
                      +.++++ .+.+++.+.|.+|..     .|.+...     ...|.++.|.+.+....  .+.      ...+.+.+-++||
T Consensus       347 ~~~~~~~~~~~~l~~~L~~l~~-----~~~v~~v-----r~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  416 (472)
T 3hmu_A          347 ILDHVRNVAAPYLKEKWEALTD-----HPLVGEA-----KIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNL  416 (472)
T ss_dssp             HHHHHHHTHHHHHHHHHHGGGG-----STTEEEE-----EEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-----CCCeEEE-----EecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCc
Confidence            456667 777888888877631     2334322     12467888887542110  000      1123333334576


Q ss_pred             EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .++.+                                        + +.||+++.+..|.|||+++++.|++++.+-
T Consensus       417 ~v~~~----------------------------------------g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~  452 (472)
T 3hmu_A          417 IMRHV----------------------------------------G-DRMIISPPLVITPAEIDEMFVRIRKSLDEA  452 (472)
T ss_dssp             CCEEE----------------------------------------T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEec----------------------------------------C-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            65421                                        1 589999999999999999999999998763

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.38  E-value=3.1e-13  Score=142.69  Aligned_cols=183  Identities=12%  Similarity=0.059  Sum_probs=117.7

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHc---
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFL---  183 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~l---  183 (603)
                      ..-.|+|..+..+.++.+.+++.+.+...                        ..+.|+.  ..-..+.|++|++++   
T Consensus        32 ~~g~~~~~~~~~~~~~~v~~a~~~~~~~~------------------------~~~~y~~--~~g~~~lr~~la~~~~~~   85 (396)
T 2q7w_A           32 GIGVYKDETGKTPVLTSVKKAEQYLLENE------------------------TTKNYLG--IDGIPEFGRCTQELLFGK   85 (396)
T ss_dssp             SCCSCCCTTSCCCCCHHHHHHHHHHHHHC------------------------CCCCCCC--TTCCHHHHHHHHHHHHCT
T ss_pred             ccccccCCCCCccCcHHHHHHHHhhcCcc------------------------cccCCCC--CCCCHHHHHHHHHHHhcC
Confidence            44568888888888899999876532110                        0000100  011247888888888   


Q ss_pred             C---CCCCcEEE--eccC-chHHHH-----------------------HHHHHHcCCEEEEEeccC-CccccCHHHHHHH
Q 007454          184 N---ISENDYVY--DYES-EAVEAM-----------------------IRTSEKRGARVMSAEFSW-PRLRINSEKLRKM  233 (603)
Q Consensus       184 n---a~~~e~vf--~~es-~sV~~~-----------------------~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~  233 (603)
                      +   ++++++++  +... +++..+                       ...++..|+++..++.+. .+..++.++|++.
T Consensus        86 ~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~  165 (396)
T 2q7w_A           86 GSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINS  165 (396)
T ss_dssp             TCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHH
T ss_pred             CCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHH
Confidence            3   24778876  4321 222222                       223445677887777631 2567899999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccCCC-----CCCCCC-CCCC-CCcEEEE
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALGPK-----DMDSFG-LSLV-RPDFLIC  302 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~~~-----~m~~ld-ls~~-~~Dflv~  302 (603)
                      |...   ++++++++++..+|.||.++|.+.    +++|+++|+++++|.++....     ...++. +... ..++++.
T Consensus       166 l~~~---~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  242 (396)
T 2q7w_A          166 LNEA---QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVAS  242 (396)
T ss_dssp             HTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEE
T ss_pred             HHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEE
Confidence            8642   125789999999999999999763    346889999999999865421     001121 2111 3468899


Q ss_pred             cccccCCCCCCc--eEEEEE
Q 007454          303 SFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~v  320 (603)
                      |++|.||  +.|  +|++++
T Consensus       243 s~sK~~~--~~G~riG~~~~  260 (396)
T 2q7w_A          243 SYSXNFG--LYNERVGACTL  260 (396)
T ss_dssp             ECTTTTT--CGGGCCEEEEE
T ss_pred             ecccccc--ccccccceEEE
Confidence            9999999  668  699987

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.37  E-value=1.4e-10  Score=126.16  Aligned_cols=194  Identities=14%  Similarity=0.148  Sum_probs=119.5

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      ++.-|||..+.      +.-++.+++++.+.+....                  ......    + -..+...+.+++++
T Consensus        49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~------------------~~~~~~----~-~~~~~~~~la~~l~  105 (460)
T 3gju_A           49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLA------------------YYHAYV----G-HGTEASITLAKMII  105 (460)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHS------------------CCCCCT----T-CCCHHHHHHHHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcc------------------cccccc----c-cCCHHHHHHHHHHH
Confidence            46779998765      3347888888765322100                  000000    0 01244567889999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--------cCCEEEEEeccC-------------------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--------RGARVMSAEFSW-------------------------------  220 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--------~Ga~V~~~~~~~-------------------------------  220 (603)
                      ++++.+.++++|... ++++...+..+.+        .+.+|......+                               
T Consensus       106 ~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (460)
T 3gju_A          106 DRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTE  185 (460)
T ss_dssp             HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEEC
T ss_pred             hhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeC
Confidence            998888888888754 3566665666553        234555322111                               


Q ss_pred             -------CccccC--------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecc
Q 007454          221 -------PRLRIN--------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       221 -------~~g~i~--------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAa  280 (603)
                             ++..++        .++|+++|....  .+++++|.+...+|.+|.+.|    ++.+ ++|+++|+++++|-+
T Consensus       186 ~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv  263 (460)
T 3gju_A          186 APYYFRRTDRSMSEEQFSQHCADKLEEMILAEG--PETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEV  263 (460)
T ss_dssp             CCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCccccCCccccChhHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence                   000011        578888886311  125788888888999999777    7755 589999999999988


Q ss_pred             cc-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCc
Q 007454          281 AL-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPIL  328 (603)
Q Consensus       281 q~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L  328 (603)
                      +. .+..  +..++.....||++++|  |.+|+ . ..+|++++++++++.+
T Consensus       264 ~~g~gr~g~~~~~~~~~~~pdi~t~s--K~l~g-G~~~lg~v~~~~~i~~~~  312 (460)
T 3gju_A          264 VTGFGRLGTMFGSDHYGIKPDLITIA--KGLTS-AYAPLSGVIVADRVWQVL  312 (460)
T ss_dssp             TTTTTTTSSSCHHHHHTCCCSEEEEC--GGGTT-TSSCCEEEEEEHHHHHHH
T ss_pred             ccCCCcccccchHhhcCCCCCeeeee--hhhcC-CCCCeEEEEECHHHHHHH
Confidence            66 3321  11122223468999887  98873 2 2479999998876555

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.37  E-value=1.3e-10  Score=125.68  Aligned_cols=194  Identities=11%  Similarity=0.108  Sum_probs=119.6

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||..+.      |.-++.+++++.+.+...    .             + .++..    +  ..+...+.+++++
T Consensus        42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~----~-------------~-~~~~~----~--~~~~~~~la~~l~   97 (448)
T 3dod_A           42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI----A-------------H-STLLG----M--TNVPATQLAETLI   97 (448)
T ss_dssp             TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC----S-------------C-CCCSS----S--EEHHHHHHHHHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc----c-------------C-ccccc----c--CCHHHHHHHHHHH
Confidence            56789998873      335788888877643321    0             0 00000    0  1234567888999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH----cC----CEEEEEeccCC------------------------------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK----RG----ARVMSAEFSWP------------------------------  221 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~----~G----a~V~~~~~~~~------------------------------  221 (603)
                      ++++...++++|... ++++...+..+.+    .|    .+|......+.                              
T Consensus        98 ~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (448)
T 3dod_A           98 DISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAP  177 (448)
T ss_dssp             HHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEEC
T ss_pred             HhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeC
Confidence            999877777777653 4566665665554    44    56654322110                              


Q ss_pred             --c------------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcc-cccccccc----HHHH-HHHHhCCcEEEEeccc
Q 007454          222 --R------------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHS-RMTGARYP----YLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       222 --~------------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~S-n~TG~~~p----l~~i-~~a~e~g~~vlvDAaq  281 (603)
                        +            ...+.++|+++|...   .+++.+|.+.... |.+|.+.|    ++.+ ++|+++|+++++|-++
T Consensus       178 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~  254 (448)
T 3dod_A          178 IPYVYRSESGDPDECRDQCLRELAQLLEEH---HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVA  254 (448)
T ss_dssp             CCCCTTSSSCCHHHHHHHHHHHHHHHHHHH---GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCccccCCccchhhhhHHHHHHHHHHHHhC---CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccc
Confidence              0            001367888888621   1256777776666 88998887    7755 5899999999999886


Q ss_pred             c-CCCC--CCCCCCCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCC
Q 007454          282 L-GPKD--MDSFGLSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       282 ~-~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p  330 (603)
                      . .+..  +...+.....+|++++|  |.+|. . ..+|+++.++++++.+.+
T Consensus       255 ~g~g~~g~~~a~~~~~~~~di~t~s--K~l~~-G~~~ig~v~~~~~~~~~~~~  304 (448)
T 3dod_A          255 TGFGRTGKMFACEHENVQPDLMAAG--KGITG-GYLPIAVTFATEDIYKAFYD  304 (448)
T ss_dssp             TTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCCEEEEEEHHHHHTTCS
T ss_pred             cCCCcccchhhhhhcCCCCCEEEec--ccccC-CcCceEEEEECHHHHHHhhh
Confidence            6 2210  11223334568998887  98873 2 246999999887766653

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.37  E-value=2.4e-12  Score=136.56  Aligned_cols=175  Identities=13%  Similarity=0.058  Sum_probs=112.8

Q ss_pred             ceeeecCCC---CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC
Q 007454          109 HTCLDYFGI---GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       109 ~vYLDyaa~---tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      .|| |+++.   +++++.+++++..+                        ++|.          ...+..++.+++++|+
T Consensus        29 ~v~-~~~~~~~~~~~~~~v~~a~~~~------------------------~~~~----------~~~~~~~~~~a~~~g~   73 (374)
T 2aeu_A           29 ALY-DLSGLSGGFLIDEKDKALLNTY------------------------IGSS----------YFAEKVNEYGLKHLGG   73 (374)
T ss_dssp             GCE-ECSSCCCCCCCCHHHHHHHTST------------------------THHH----------HHHHHHHHHHHHHHTC
T ss_pred             cee-eecccCCCCCCCHHHHHHHHHh------------------------cCch----------HHHHHHHHHHHHHhCC
Confidence            478 98864   68899999997521                        2221          1224566667888998


Q ss_pred             C-CCcEEEecc-CchHHHHHHHHHHcCCEEEEEeccCCc-----------c-c----cCHHHHHHHHhhcCCCCCCeeE-
Q 007454          186 S-ENDYVYDYE-SEAVEAMIRTSEKRGARVMSAEFSWPR-----------L-R----INSEKLRKMVVSKGKKKKQRGL-  246 (603)
Q Consensus       186 ~-~~e~vf~~e-s~sV~~~~~~a~~~Ga~V~~~~~~~~~-----------g-~----i~~~~L~~~l~~~~~~~~~t~L-  246 (603)
                      + ++++++... ++++..++..+  .|.+|......++.           | .    .+.++|++. .      +++++ 
T Consensus        74 ~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v~d~~~l~~~-~------~~~~~~  144 (374)
T 2aeu_A           74 DENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFESDKVGEILNK-I------DKDTLV  144 (374)
T ss_dssp             CTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEESCHHHHHTT-C------CTTEEE
T ss_pred             CCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEeCCHHHHHhc-C------CCccEE
Confidence            4 356655432 23444444433  56666655442211           0 0    256666554 2      36889 


Q ss_pred             EEEeCcccccc-ccccHHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          247 FVFPLHSRMTG-ARYPYLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       247 v~~~~~Sn~TG-~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      |.++..+|.|| .+.|++.+ ++|+++|+++++|.++.....  ......-.+++|+++.|+||++++ | ++|+++.++
T Consensus       145 v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g-~-~~G~~~~~~  222 (374)
T 2aeu_A          145 IITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG-P-RGGLLAGKK  222 (374)
T ss_dssp             EEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS-C-SCEEEEEEH
T ss_pred             EEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC-c-ceEEEEECH
Confidence            99999999999 88899855 589999999999997644320  001001125789999999999875 5 899999998


Q ss_pred             CCCcCcC
Q 007454          323 STVPILV  329 (603)
Q Consensus       323 ~~~~~L~  329 (603)
                      ++++.+.
T Consensus       223 ~~~~~l~  229 (374)
T 2aeu_A          223 ELVDKIY  229 (374)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7654443

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.36  E-value=1.4e-11  Score=131.97  Aligned_cols=183  Identities=11%  Similarity=0.017  Sum_probs=119.8

Q ss_pred             CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCC-
Q 007454          107 SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNI-  185 (603)
Q Consensus       107 ~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna-  185 (603)
                      ..-+|+|..+.++.++.+.+++.+.+.... .  .+|            ..+ .    |      ..+.|+.|+++++. 
T Consensus        55 ~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~-~--~~Y------------~~~-~----g------~~~lr~~ia~~l~~~  108 (420)
T 4f4e_A           55 GVGVYTNEDGKIPLLRAVRDAEKARVEAGL-P--RGY------------LPI-D----G------IAAYDASVQKLLLGD  108 (420)
T ss_dssp             CCCSCCCTTSCCCCCHHHHHHHHHHHHTCC-C--CCC------------CCT-T----C------CHHHHHHHHHHHHCT
T ss_pred             eeeeeECCCCCccCcHHHHHHHHHHhccCC-C--CCC------------CCC-C----C------cHHHHHHHHHHhcCC
Confidence            445799999999999999998776432100 0  000            100 0    1      23677777777754 


Q ss_pred             -----CCC--cEEEeccC-chH-----------------------HHHHHHHHHcCCEEEEEec-cCCccccCHHHHHHH
Q 007454          186 -----SEN--DYVYDYES-EAV-----------------------EAMIRTSEKRGARVMSAEF-SWPRLRINSEKLRKM  233 (603)
Q Consensus       186 -----~~~--e~vf~~es-~sV-----------------------~~~~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~  233 (603)
                           +++  +++++... +++                       ......++..|+++..++. +..++.++.++|++.
T Consensus       109 ~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~  188 (420)
T 4f4e_A          109 DSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAA  188 (420)
T ss_dssp             TCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHH
T ss_pred             CccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHH
Confidence                 455  67665322 121                       1123345567888888887 223678899999999


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC-C----CCCC-CC-CCCCCcEEEE
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK-D----MDSF-GL-SLVRPDFLIC  302 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~-~----m~~l-dl-s~~~~Dflv~  302 (603)
                      |...   ++++++++++..+|.||..+|.+.+    ++|+++|+++++|.+...-. +    ..++ .+ ...+.++++.
T Consensus       189 l~~~---~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~  265 (420)
T 4f4e_A          189 LNGY---EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSS  265 (420)
T ss_dssp             HTTC---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEE
T ss_pred             HHhC---CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEE
Confidence            9631   2468999999999999999997632    35889999999999853221 0    0000 01 1245678999


Q ss_pred             cccccCCCCCCc--eEEEEE
Q 007454          303 SFYQIFGENPSG--FGCLFV  320 (603)
Q Consensus       303 S~hK~fG~~P~G--~G~L~v  320 (603)
                      |+.|.||  +.|  +|++++
T Consensus       266 S~SK~~~--~~G~RiG~~~~  283 (420)
T 4f4e_A          266 SFSKSFS--LYGERVGALSI  283 (420)
T ss_dssp             ECTTTTT--CGGGCEEEEEE
T ss_pred             eCCccCc--CcCCCcEEEEE
Confidence            9999999  668  898875

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.35  E-value=5.1e-11  Score=129.27  Aligned_cols=137  Identities=9%  Similarity=0.061  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc------------------------CchHHH-HHHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE------------------------SEAVEA-MIRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e------------------------s~sV~~-~~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ....++.+++|++++|.+. .+++..-                        +.+... +...++..|++++.++.+    
T Consensus        81 ~p~~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~----  155 (430)
T 3ri6_A           81 NPTVEDLEQRLKNLTGALG-VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM----  155 (430)
T ss_dssp             CHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred             CHHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC----
Confidence            4556788999999999754 4544321                        111211 112456678888887754    


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEE
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLIC  302 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~  302 (603)
                        +.++|++.|..      +|++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|.   -.+...+++|+++.
T Consensus       156 --d~~~l~~ai~~------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~---~~~~~~~g~div~~  224 (430)
T 3ri6_A          156 --DSLAVEHACDE------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPY---LLEAKRLGVDIEVL  224 (430)
T ss_dssp             --CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTT---TCCGGGGTCSEEEE
T ss_pred             --CHHHHHHhhCC------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc---cCChHHcCCEEEEE
Confidence              68889988863      69999999999999999999966 58999999999999988876   24555678999999


Q ss_pred             cccccCCCCCCceEEEEEe
Q 007454          303 SFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       303 S~hK~fG~~P~G~G~L~vk  321 (603)
                      |++|++|++..++|.+++.
T Consensus       225 S~sK~l~g~g~~~gG~vv~  243 (430)
T 3ri6_A          225 SSTKFISGGGTSVGGVLID  243 (430)
T ss_dssp             ECCCEEETTEEECCEEEEE
T ss_pred             CCcccccCCCCceEEEEEE
Confidence            9999998421237777773

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.35  E-value=2.2e-10  Score=125.64  Aligned_cols=324  Identities=12%  Similarity=0.059  Sum_probs=190.8

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||..+.      |.-++.+++++.+.+....                 + +... .     -..+...+..++++
T Consensus        52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~-----------------~-~~~~-~-----~~~~~~~~la~~l~  107 (476)
T 3i5t_A           52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLP-----------------Y-ASPW-Y-----MATSPAARLAEKIA  107 (476)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-----------------C-CCTT-T-----CBCHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc-----------------C-cccC-c-----cCCHHHHHHHHHHH
Confidence            56789998754      4458889988765432110                 0 0000 0     01245567888899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHHc--------CCEEEEEeccCC-----------------------cc--cc-
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEKR--------GARVMSAEFSWP-----------------------RL--RI-  225 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~~--------Ga~V~~~~~~~~-----------------------~g--~i-  225 (603)
                      ++++...+.++|... ++++...+..+++.        +.+|......+.                       .+  .+ 
T Consensus       108 ~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (476)
T 3i5t_A          108 TLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLS  187 (476)
T ss_dssp             TTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEEC
T ss_pred             hcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeC
Confidence            999877777777653 45666656665431        345553221110                       00  00 


Q ss_pred             --------C----------HHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc
Q 007454          226 --------N----------SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       226 --------~----------~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~  282 (603)
                              +          .++|+++|....  .+++.+|.+-..++.+|.+.|    ++.+ ++|+++|+++++|-++.
T Consensus       188 ~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~--~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~  265 (476)
T 3i5t_A          188 SPNPRHAGNRSQEAFLDDLVQEFEDRIESLG--PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT  265 (476)
T ss_dssp             CCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC--GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCcccccCCCchHHHHHHHHHHHHHHHHhcC--CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence                    1          678988886311  125788888888889998776    7755 48999999999998876


Q ss_pred             -CCCC--CCCCC-CCCCCCcEEEEcccccCCCCC-CceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCC
Q 007454          283 -GPKD--MDSFG-LSLVRPDFLICSFYQIFGENP-SGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCE  356 (603)
Q Consensus       283 -~~~~--m~~ld-ls~~~~Dflv~S~hK~fG~~P-~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~  356 (603)
                       .+..  +..+. .....||++++|  |.+|+ . -.+|++++++++++.+.+.... +.                    
T Consensus       266 g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~~-G~~plg~v~~~~~i~~~~~~~~~~~~~--------------------  322 (476)
T 3i5t_A          266 GFGRCGEWFASEKVFGVVPDIITFA--KGVTS-GYVPLGGLAISEAVLARISGENAKGSW--------------------  322 (476)
T ss_dssp             TTTTTSSSCHHHHTTCCCCSEEEEC--GGGGT-TSSCCEEEEECHHHHHTTSGGGCTTCE--------------------
T ss_pred             CCccccCceeeecccCCCcchhhhh--hhhcC-CCcCeEEEEECHHHHHHHhcCCccccc--------------------
Confidence             2221  11122 233469999887  98773 2 3469999998877656532100 00                    


Q ss_pred             CCcccCcccccccccCCC--ChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454          357 TEPEQTSKSKQEKVAATN--TFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL  434 (603)
Q Consensus       357 ~e~~~~~~~~~~~e~GT~--n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl  434 (603)
                               +  .-.+|.  |..+.++.               +                         ++|+.+++   
T Consensus       323 ---------~--~~~~t~~~np~a~aAa---------------~-------------------------aaL~~~~~---  348 (476)
T 3i5t_A          323 ---------F--TNGYTYSNQPVACAAA---------------L-------------------------ANIELMER---  348 (476)
T ss_dssp             ---------E--CCCCTTTTCHHHHHHH---------------H-------------------------HHHHHHHH---
T ss_pred             ---------c--cccCCCCcCHHHHHHH---------------H-------------------------HHHHHHHh---
Confidence                     0  001221  22221111               1                         46666554   


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccC-------HHHHHHHHhcCCc
Q 007454          435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIE-------PVLVQKLADRENI  507 (603)
Q Consensus       435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~-------~~~V~~Lad~~gI  507 (603)
                      +.+.++++.+.+++.+.|.+|.     ..|.+..+-     ..|.++.+.+.+.......       ...+.+.+-++||
T Consensus       349 ~~~~~~~~~~~~~l~~~L~~l~-----~~~~v~~v~-----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv  418 (476)
T 3i5t_A          349 EGIVDQAREMADYFAAALASLR-----DLPGVAETR-----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGL  418 (476)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTT-----TSTTEEEEE-----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-----cCCCeEEEE-----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCC
Confidence            3456778888889999988774     123343221     2467888877653211100       1122233334577


Q ss_pred             EEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q 007454          508 SLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       508 ~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      .++.                                        .+ +.||+++.+..|.+||+++++.|++++.+-
T Consensus       419 ~v~~----------------------------------------~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~  454 (476)
T 3i5t_A          419 IVRP----------------------------------------LG-DLCVISPPLIISRAQIDEMVAIMRQAITEV  454 (476)
T ss_dssp             ECEE----------------------------------------ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEe----------------------------------------cC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            6642                                        11 589999999999999999999999998753

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.33  E-value=3.7e-11  Score=129.00  Aligned_cols=141  Identities=8%  Similarity=0.082  Sum_probs=97.2

Q ss_pred             ccchHHHHHHHHHHHHHHHcCCCCCcEEEec-----------------------cCch-HHHHHHH-HHHcCCEEEEEec
Q 007454          164 HGGQESGLESAMKKRIMDFLNISENDYVYDY-----------------------ESEA-VEAMIRT-SEKRGARVMSAEF  218 (603)
Q Consensus       164 ~g~~~~~~~~~aR~~Ia~~lna~~~e~vf~~-----------------------es~s-V~~~~~~-a~~~Ga~V~~~~~  218 (603)
                      |+.......++.+++|+++.|.+ +.+++..                       .+.+ ...+... +++.|+++..++.
T Consensus        61 y~r~~~p~~~~l~~~la~l~g~~-~~~~~~sG~~Ai~~~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~  139 (400)
T 3nmy_A           61 YSRTHNPTRFAYERCVAALEGGT-RAFAFASGMAATSTVMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL  139 (400)
T ss_dssp             BTTTCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred             cccCCCHHHHHHHHHHHHHhCCC-CEEEecCHHHHHHHHHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence            33333455667888888888865 3333321                       1111 1222223 4556888888776


Q ss_pred             cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCC
Q 007454          219 SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRP  297 (603)
Q Consensus       219 ~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~  297 (603)
                      +      +.++|++.|..      ++++|.+...+|.||.+.|++.+ ++|+++|+++++|.++..|....+++   +++
T Consensus       140 ~------d~~~l~~~i~~------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~---~g~  204 (400)
T 3nmy_A          140 T------DPAAFKAAIRA------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLS---LGA  204 (400)
T ss_dssp             T------SHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGG---GTC
T ss_pred             C------CHHHHHHHhcc------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChhh---cCC
Confidence            4      67889888863      68999999999999999999966 58999999999999987553112443   479


Q ss_pred             cEEEEcccccCCCCCCceEE-EEE
Q 007454          298 DFLICSFYQIFGENPSGFGC-LFV  320 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~-L~v  320 (603)
                      |+++.|++|++|++...+|. +++
T Consensus       205 div~~S~sK~l~g~g~~~gG~~vv  228 (400)
T 3nmy_A          205 DLVVHSATKYLNGHSDMVGGIAVV  228 (400)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEE
T ss_pred             cEEEecCccccCCCCCcceeEEEE
Confidence            99999999999862134555 444

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.32  E-value=2.4e-10  Score=122.81  Aligned_cols=188  Identities=12%  Similarity=0.073  Sum_probs=122.0

Q ss_pred             CCceeeecCCCCC------CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIGL------FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~tl------~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||++++..      -++.+++++.+.+...         .        ....          ......+.+++++
T Consensus        51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~---------~--------~~~~----------~~~~~~~l~~~la  103 (429)
T 3k28_A           51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERG---------T--------SFGA----------PTEIENKLAKLVI  103 (429)
T ss_dssp             TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHC---------S--------CCSS----------CCHHHHHHHHHHH
T ss_pred             CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhC---------c--------CcCC----------CCHHHHHHHHHHH
Confidence            5678999987642      5888999876543210         0        0000          1134457788899


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHHH--cCCEEEEEeccCC----------------------cccc----------
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSEK--RGARVMSAEFSWP----------------------RLRI----------  225 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~~~~~~~----------------------~g~i----------  225 (603)
                      ++++ .+++++|... ++++...+..+..  .+-+|...+..+.                      .+..          
T Consensus       104 ~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (429)
T 3k28_A          104 ERVP-SIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITV  182 (429)
T ss_dssp             HHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEE
T ss_pred             HhCC-CCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeec
Confidence            9987 5778887753 4566665555543  3445655432211                      0000          


Q ss_pred             ---CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC---CCCCCCCCCCC
Q 007454          226 ---NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG---PKDMDSFGLSL  294 (603)
Q Consensus       226 ---~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~---~~~m~~ldls~  294 (603)
                         +.++|++.|...   .+++.+|.+...++.+|.+.|    ++.+ ++|+++|+++++|-++..   ++ +...+...
T Consensus       183 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~-~~~~~~~~  258 (429)
T 3k28_A          183 AYNDLESVKYAFEQF---GDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAY-NCGQGYYG  258 (429)
T ss_dssp             ETTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSST-THHHHHHT
T ss_pred             CCCCHHHHHHHHHhC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCc-chHHHHhC
Confidence               788999988732   125788888888888999999    8866 589999999999999853   11 01111223


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      ..+|++++|  |.||. ...+|++++++++++.+.
T Consensus       259 ~~~di~t~s--K~~~~-G~~iG~~~~~~~~~~~~~  290 (429)
T 3k28_A          259 VTPDLTCLG--KVIGG-GLPVGAYGGKAEIMRQVA  290 (429)
T ss_dssp             CCCSEEEEC--GGGGT-TSCCEEEEECHHHHTTBT
T ss_pred             CCCceehhh--hhhcC-CCCeEEEEEcHHHHhhhc
Confidence            468988877  98874 557999999988766554

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.31  E-value=6.5e-11  Score=126.23  Aligned_cols=121  Identities=17%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc-cccccccccHHHHH-H---HH------hC
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH-SRMTGARYPYLWMR-I---AQ------EN  271 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~-Sn~TG~~~pl~~i~-~---a~------e~  271 (603)
                      ...++..|+++..+++++.++.++.++|++.|..... .+.+.++.+... +|.||.++|.+.+. +   |+      ++
T Consensus       140 ~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~  218 (418)
T 3rq1_A          140 RVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA-KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN  218 (418)
T ss_dssp             HHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH-HCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc-cCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC
Confidence            3456678999999998655668999999999874100 013447888777 89999999997443 3   44      89


Q ss_pred             CcEEEEeccccC-CCC---CCCC--CCCCCCCc---EEEEcccccCCCCCCc--eEEEEE---eCCCCc
Q 007454          272 DWHILIDACALG-PKD---MDSF--GLSLVRPD---FLICSFYQIFGENPSG--FGCLFV---KKSTVP  326 (603)
Q Consensus       272 g~~vlvDAaq~~-~~~---m~~l--dls~~~~D---flv~S~hK~fG~~P~G--~G~L~v---kk~~~~  326 (603)
                      |+++++|.+... ..+   ..++  .......|   +++.|++|.||.  .|  +|++++   ++++++
T Consensus       219 ~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~--~G~r~G~~~~~~~~~~~~~  285 (418)
T 3rq1_A          219 NVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM--YGQRVGAMIGISDDEEIAD  285 (418)
T ss_dssp             EEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC--CSSCCEEEEEEESSHHHHH
T ss_pred             CeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC--cCCcceEEEEEeCCHHHHH
Confidence            999999998521 110   0011  11223445   778899999983  35  788887   555443

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.27  E-value=5.1e-10  Score=120.27  Aligned_cols=189  Identities=14%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++.      +..++.+++++.+.+..                     ++ +.    +. ......+.+++++
T Consensus        54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~---------------------~~-~~----~~-~~~~~~~l~~~la  106 (434)
T 2epj_A           54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR---------------------GW-LY----GA-PGEAEVLLAEKIL  106 (434)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---------------------CS-CC----SS-CCHHHHHHHHHHH
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh---------------------CC-CC----CC-CCHHHHHHHHHHH
Confidence            45789998754      33578888887764321                     00 00    00 2345667889999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCCc----------------------c-------c----
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWPR----------------------L-------R----  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~~----------------------g-------~----  224 (603)
                      ++++ .+++++|... ++++...+..++  ..+.+|...+..+..                      +       .    
T Consensus       107 ~~~~-~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~  185 (434)
T 2epj_A          107 GYVK-RGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVT  185 (434)
T ss_dssp             HHHC-TTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEE
T ss_pred             HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEec
Confidence            9996 5677777653 345555555532  234466655422210                      1       0    


Q ss_pred             --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCCCCC---CCCCC
Q 007454          225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKDMDS---FGLSL  294 (603)
Q Consensus       225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~m~~---ldls~  294 (603)
                        .+.++|++.|...   .+++++|.+...++.||.+.|    ++.+ ++|+++|+++++|.++.+-.. .+   ++...
T Consensus       186 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~-g~~~~~~~~~  261 (434)
T 2epj_A          186 PYNDVEALERVFAEY---GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL-GLEGAQGYFN  261 (434)
T ss_dssp             ETTCHHHHHHHHHHH---GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS-STTHHHHHHT
T ss_pred             CCCCHHHHHHHHHhC---CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC-CcchhhHHhC
Confidence              2678899888641   125788888777778999998    8755 589999999999999872110 11   11112


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ..+|++++  .|.||. ...+|++++++++++.+.+
T Consensus       262 ~~~di~s~--sK~l~~-G~~~G~v~~~~~~~~~l~~  294 (434)
T 2epj_A          262 IEGDIIVL--GKIIGG-GFPVGAVAGSREVMSLLTP  294 (434)
T ss_dssp             CCCSEEEE--EGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred             CCCCeeee--cchhcC-CcceeeeeecHHHHHhhcc
Confidence            45898754  598873 2348999999877665543

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.27  E-value=3.7e-10  Score=122.76  Aligned_cols=192  Identities=10%  Similarity=0.027  Sum_probs=114.2

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+.-|||+.+.      |.-++.+++++.+.+....                 ++..  .     .-..+...+.+++++
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~-----------------~~~~--~-----~~~~~~~~~la~~l~  117 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFT-----------------HTCF--M-----VTPYEQYVQVAELLN  117 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS-----------------CCTT--T-----TSCCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcc-----------------cccc--C-----cCCCHHHHHHHHHHH
Confidence            56789999874      3348888888765432100                 0000  0     001244567889999


Q ss_pred             HHcCCC-CCcEEEecc-CchHHHHHHHHHH--cCCEEEE-----------------------------------EeccCC
Q 007454          181 DFLNIS-ENDYVYDYE-SEAVEAMIRTSEK--RGARVMS-----------------------------------AEFSWP  221 (603)
Q Consensus       181 ~~lna~-~~e~vf~~e-s~sV~~~~~~a~~--~Ga~V~~-----------------------------------~~~~~~  221 (603)
                      ++++.+ +++++|+.. ++++...+..++.  .+.+|..                                   +++..+
T Consensus       118 ~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (453)
T 4ffc_A          118 ALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYP  197 (453)
T ss_dssp             HHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCT
T ss_pred             HhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCcc
Confidence            999865 467777643 3566655555543  2233432                                   222210


Q ss_pred             --c--cc-------cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEecccc-CC
Q 007454          222 --R--LR-------INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACAL-GP  284 (603)
Q Consensus       222 --~--g~-------i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~-~~  284 (603)
                        +  +.       .+.+.|++.+..     .++.+|.+...++..|.+.|    ++.+ ++|+++|+++++|-++. .+
T Consensus       198 ~~~~~g~~~~~~~~~~~~~l~~~i~~-----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g  272 (453)
T 4ffc_A          198 LRDEPGLTGEEAARRAISRIETQIGA-----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFA  272 (453)
T ss_dssp             TTSCTTCCHHHHHHHHHHHHHHHTCG-----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred             ccCccccchHHHHHHHHHHHHHhcCC-----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCC
Confidence              0  10       012344444432     25678888778888899888    7755 58999999999999876 22


Q ss_pred             CC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          285 KD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       285 ~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ..  +..++.....+|++++|  |.+|. .-.+|+++.++++++.+.+
T Consensus       273 ~~g~~~a~~~~~~~pdi~t~s--K~~~~-G~~~G~~~~~~~i~~~~~~  317 (453)
T 4ffc_A          273 RTGAWFASEHEGIVPDIVTMA--KGIAG-GMPLSAVTGRAELMDAVYA  317 (453)
T ss_dssp             TTSSSSTHHHHTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTTSCT
T ss_pred             cccccchhhhcCCCcchHhhh--hhhcC-CcCeEEEEECHHHHhhhcc
Confidence            21  11122223468998887  98873 3358999999887766654

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.27  E-value=9.1e-11  Score=122.14  Aligned_cols=142  Identities=13%  Similarity=0.172  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHHHH--------------------------HcCCEEEEEeccCCccc
Q 007454          171 LESAMKKRIMDFLNISENDYVYDYESEAVEAMIRTSE--------------------------KRGARVMSAEFSWPRLR  224 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~a~--------------------------~~Ga~V~~~~~~~~~g~  224 (603)
                      ...+.|++|++++|.+ ..+++..-+.++...+..+.                          ..|+++..++.  .++.
T Consensus        48 ~~~~l~~~la~~~~~~-~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~  124 (357)
T 3lws_A           48 IIEPFEQKFADVLGMD-DAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA--ADRL  124 (357)
T ss_dssp             THHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC--TTSC
T ss_pred             HHHHHHHHHHHHhCCC-cEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEEecC--CCCC
Confidence            3467889999999984 34444322222222222222                          23444544442  3456


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-ccccc---HHHH-HHHHhCCcEEEEecccc------CCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYP---YLWM-RIAQENDWHILIDACAL------GPKDMDSFGLS  293 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~p---l~~i-~~a~e~g~~vlvDAaq~------~~~~m~~ldls  293 (603)
                      ++.++|+++.        +++++.+...+|.| |.++|   ++.+ ++|+++|++|++|.++.      .+..  ..++.
T Consensus       125 ~d~~~l~~~~--------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~  194 (357)
T 3lws_A          125 MTLDEIKALP--------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT--AAEIA  194 (357)
T ss_dssp             CCHHHHHTCC--------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--HHHHH
T ss_pred             cCHHHHhcCc--------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC--hHHHH
Confidence            7888887651        37899999999998 99998   4433 47899999999998764      1221  11111


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                       ..+|.+++|++|+||+ |.| |+++.++++++.+
T Consensus       195 -~~~d~~~~s~sK~~~~-~~g-g~~~~~~~~~~~~  226 (357)
T 3lws_A          195 -GLFDSIYISFYKGLGG-IAG-AILAGPAAFCQTA  226 (357)
T ss_dssp             -TTSSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred             -hcCCEEEEeccccCCC-Cce-EEEEcCHHHHHHH
Confidence             3579999999999955 888 8888877655433

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.26  E-value=1.3e-11  Score=133.55  Aligned_cols=274  Identities=13%  Similarity=0.087  Sum_probs=165.3

Q ss_pred             HHHHHHHHHHcC------CCCCcEEEeccC-chHHHHHHHH--------HHcCCEEEEEeccCCc--------------c
Q 007454          173 SAMKKRIMDFLN------ISENDYVYDYES-EAVEAMIRTS--------EKRGARVMSAEFSWPR--------------L  223 (603)
Q Consensus       173 ~~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~~~~a--------~~~Ga~V~~~~~~~~~--------------g  223 (603)
                      .+.|+.|+++++      +++++++++..+ +++..++...        .+.|.+|......++.              .
T Consensus       103 ~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~  182 (427)
T 2hox_A          103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW  182 (427)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE
T ss_pred             HHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee
Confidence            578889999887      678899887654 3555555555        4567666655443321              1


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                      .++.++|++.+.      ++++++.++..+|.||.++| +++   +  +..++.|.+.+.++. ..+++. .+.|+++.|
T Consensus       183 ~~d~~~l~~~~~------~~~k~v~l~~p~NPtG~~~~-~~l---~--~~~~i~d~~~~~~~~-s~~~~~-~~~~i~~~S  248 (427)
T 2hox_A          183 AGNAANYVNVSN------PEQYIEMVTSPNNPEGLLRH-AVI---K--GCKSIYDMVYYWPHY-TPIKYK-ADEDILLFT  248 (427)
T ss_dssp             EEEGGGGTTCSC------GGGEEEEEESSCTTTCCCCC-CSS---T--TCEEEEECTTCSTTT-SCCCSC-BCCSEEEEE
T ss_pred             cCCHHHHHHhhc------CCceEEEEcCCCCCcccccH-HHH---c--CCCEEEeecccCCCC-CccccC-CCceEEEEe
Confidence            234455554443      35789999999999999999 633   3  457788877664321 113333 578999999


Q ss_pred             ccccCCCCCCc--eEEEEEe-CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          304 FYQIFGENPSG--FGCLFVK-KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       304 ~hK~fG~~P~G--~G~L~vk-k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      ++|.||  +.|  +|.++++ +++++.+....                                ..  ...+++.+...+
T Consensus       249 ~SK~~g--~~G~RiG~~~~~~~~l~~~l~~~~--------------------------------~~--~~~~~~~~~q~a  292 (427)
T 2hox_A          249 MSKFTG--HSGSRFGWALIKDESVYNNLLNYM--------------------------------TK--NTEGTPRETQLR  292 (427)
T ss_dssp             HHHHTS--CGGGCCEEEEECCHHHHHHHHHHH--------------------------------HH--HTSSCCHHHHHH
T ss_pred             ChhcCC--CCCceEEEEEECCHHHHHHHHHHH--------------------------------Hh--cCCCCCHHHHHH
Confidence            999999  558  8999995 55543333100                                00  011222222222


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH------hcCHHHHHHHHHHHHHHHHHHHhc
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD------SLGLTMISRRGRCLINWLVNALMK  454 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~------~iGl~~i~~r~~~L~~~L~~~L~~  454 (603)
                      +..             .+.                        .+.++++      .--+....++++...++|.+.|.+
T Consensus       293 ~~~-------------~L~------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  335 (427)
T 2hox_A          293 SLK-------------VLK------------------------EVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ  335 (427)
T ss_dssp             HHH-------------HHH------------------------HHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHH-------------Hhh------------------------cchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111             111                        1111111      001334556777788889999987


Q ss_pred             CCCCCCCCCceEEE--eC-CCC-------CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhh
Q 007454          455 LQHPNTEGNALVKI--YG-PKI-------RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQ  524 (603)
Q Consensus       455 L~h~~~~g~plv~I--yg-p~~-------~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~  524 (603)
                      ++        .+.+  ++ |..       ..+-+..+-+.+++ +..    +++.++++++||.++.|..|..       
T Consensus       336 ~~--------g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~----~~~~~ll~~~gI~v~pg~~f~~-------  395 (427)
T 2hox_A          336 SD--------RFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-EED----KDCYQTFQNGRINTQNGVGFEA-------  395 (427)
T ss_dssp             SS--------SEECCCCCSCEEETTTTEEECCCCSEEEEEECS-GGG----CSHHHHHHHTTEECEEGGGGTS-------
T ss_pred             Cc--------CccccccccccccccccccCCCCceEEEEECCC-cHH----HHHHHHHHHCCEEEcCCCccCC-------
Confidence            52        1444  32 210       11224455567754 221    2467777889999999876521       


Q ss_pred             hhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          525 KEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       525 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                                  ..+.||+|++.  +.|+++++++.|++++++
T Consensus       396 ----------------------------~~~~~Ris~~~--~~e~l~~~l~~l~~~~~~  424 (427)
T 2hox_A          396 ----------------------------SSRYVRLSLIK--TQDDFDQLMYYLKDMVKA  424 (427)
T ss_dssp             ----------------------------CTTEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred             ----------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence                                        12589999994  899999999999988754

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.25  E-value=1.1e-09  Score=118.87  Aligned_cols=196  Identities=11%  Similarity=0.073  Sum_probs=115.1

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      ++.-|||+.+.      |.-++.+++++.+.+...                    .+.+..    .-..+...+.+++++
T Consensus        59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~--------------------~~~~~~----~~~~~~~~~la~~l~  114 (451)
T 3oks_A           59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF--------------------THTCFM----VTPYEGYVAVCEQLN  114 (451)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC--------------------SCCTTT----TSCCHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc--------------------ccccCC----ccCCHHHHHHHHHHH
Confidence            56789999874      234788888877643211                    000000    001234557888899


Q ss_pred             HHcCCC-CCcEEEecc-CchHHHHHHHHHH-cC-CEEEEE-----------------------------------eccCC
Q 007454          181 DFLNIS-ENDYVYDYE-SEAVEAMIRTSEK-RG-ARVMSA-----------------------------------EFSWP  221 (603)
Q Consensus       181 ~~lna~-~~e~vf~~e-s~sV~~~~~~a~~-~G-a~V~~~-----------------------------------~~~~~  221 (603)
                      ++++.. +++++|+.. ++++...+..++. .| -+|...                                   ++..+
T Consensus       115 ~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (451)
T 3oks_A          115 RLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP  194 (451)
T ss_dssp             HHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCH
T ss_pred             HhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCcc
Confidence            998765 456777643 3566655555553 23 344332                                   22100


Q ss_pred             --c----------cccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-
Q 007454          222 --R----------LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-  283 (603)
Q Consensus       222 --~----------g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-  283 (603)
                        .          +..+.+.+++.|... ....++.+|.+...++..|.+.|    ++.+ ++|+++|+++++|-++.+ 
T Consensus       195 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~-~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~  273 (451)
T 3oks_A          195 FRDAEFGKELATDGELAAKRAITVIDKQ-IGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF  273 (451)
T ss_dssp             HHHGGGCTTTTTCHHHHHHHHHHHHHHH-TCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred             ccccccccccchhhHHHHHHHHHHHHhh-cCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCC
Confidence              0          001233444444321 00135788888888888999888    8755 589999999999998762 


Q ss_pred             CCC--CCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          284 PKD--MDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       284 ~~~--m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      +..  +..++.....+|.+++|  |.+|. .-.+|+++.++++++.+.+
T Consensus       274 g~~g~~~~~~~~~~~pdi~t~s--K~l~~-G~~iG~v~~~~~~~~~~~~  319 (451)
T 3oks_A          274 ARTGAMFACEHEGIDPDLIVTA--KGIAG-GLPLSAVTGRAEIMDSPHV  319 (451)
T ss_dssp             TTTSSSSGGGGGTCCCSEEEEC--GGGGT-TSSCEEEEEEHHHHTCSCT
T ss_pred             CccccchhhhhcCCCCCeeeeh--hhhhC-CcceEEEEECHHHHhhhcC
Confidence            221  11223233468988776  98873 3347999999887766654

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=98.90  E-value=6e-13  Score=141.03  Aligned_cols=119  Identities=11%  Similarity=0.090  Sum_probs=79.2

Q ss_pred             HHHcCCEEEEEeccCCcc--ccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc---HHHH-HHHHhCCcEEEEec
Q 007454          206 SEKRGARVMSAEFSWPRL--RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP---YLWM-RIAQENDWHILIDA  279 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g--~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p---l~~i-~~a~e~g~~vlvDA  279 (603)
                      ++..|+++..+++++.++  .++.++|++.|..     .+++++.++..+|.||.++|   ++.+ ++|+++|+++++|.
T Consensus       130 ~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-----~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De  204 (392)
T 3b1d_A          130 VRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE-----NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE  204 (392)
Confidence            344577777777643322  4788888888862     25788888999999999998   4433 47899999999999


Q ss_pred             cccC----CCCCCC-CCCCC--CCCcEEEEcccccCCCCCCceEEEEEeCC-CCcCcC
Q 007454          280 CALG----PKDMDS-FGLSL--VRPDFLICSFYQIFGENPSGFGCLFVKKS-TVPILV  329 (603)
Q Consensus       280 aq~~----~~~m~~-ldls~--~~~Dflv~S~hK~fG~~P~G~G~L~vkk~-~~~~L~  329 (603)
                      ++..    +....+ ..+..  .+.++++.|++|.||.+...+|++++++. +++.+.
T Consensus       205 ~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~  262 (392)
T 3b1d_A          205 IHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFK  262 (392)
Confidence            8654    210001 11211  34568999999999832123788888654 554443

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.24  E-value=9.7e-11  Score=126.32  Aligned_cols=113  Identities=12%  Similarity=-0.009  Sum_probs=89.6

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEe
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILID  278 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvD  278 (603)
                      +++.|+++..++.++ ++.++.++|+++|..      +|+||.+..    .+|.||.+.|++.| ++|++  +|+++++|
T Consensus       129 l~~~G~~~~~v~~~~-~g~~d~e~l~~ai~~------~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD  201 (409)
T 3jzl_A          129 LKDFHIGYSSVPLLE-NGDVDFPRIAKKMTP------KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD  201 (409)
T ss_dssp             TGGGTCEEEECCCCT-TSCCCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHcCCEEEEeCCCC-CCCcCHHHHHHhccC------CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe
Confidence            456688999888874 788999999999863      689999999    99999999999865 58999  99999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454          279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV  329 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~  329 (603)
                      .++..+.  ...+...+++|+++.|+||++|+ + |   .|+++.++++++.+.
T Consensus       202 ~a~~~~~--~~~~p~~~g~Div~~S~sK~lgg-~-~~~~GG~v~~~~~li~~l~  251 (409)
T 3jzl_A          202 NCYGEFV--EYQEPPEVGADIIAGSLIKNPGG-G-LAKTGGYIAGKEALVDLCG  251 (409)
T ss_dssp             CTTCTTT--SSCCSGGGTCSEEEEETTSGGGT-T-TCSSCEEEEECHHHHHHHH
T ss_pred             CCccccc--ccCCccccCCeEEEECccccCCc-c-CCceEEEEEeCHHHHHHHH
Confidence            9976664  12233346899999999999983 2 2   388888877665444

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.24  E-value=3.3e-10  Score=129.92  Aligned_cols=208  Identities=10%  Similarity=0.025  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc----------------------CchHHHHHHHHHHcCCEEEEEeccCCcc----
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE----------------------SEAVEAMIRTSEKRGARVMSAEFSWPRL----  223 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g----  223 (603)
                      ..+.++++++|+++|++. .+++...                      .+....+...++..|+++++++.++.+.    
T Consensus       195 g~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~~  273 (715)
T 3n75_A          195 GPHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILG  273 (715)
T ss_dssp             THHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCBC
T ss_pred             HHHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecccccccccc
Confidence            567899999999999953 3333211                      1112223344566799999988754321    


Q ss_pred             cc-----CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCC--CCCCC
Q 007454          224 RI-----NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSF--GLSLV  295 (603)
Q Consensus       224 ~i-----~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~l--dls~~  295 (603)
                      .+     +.++|+++|....+ .+.+++++++.. |.+|.++|++.|. +|+.+  .+++|.|+..+-...+.  +.+.+
T Consensus       274 ~i~~~~~d~e~Le~~l~~~~~-~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~--~livDEAH~~~~~f~~~~~~~~al  349 (715)
T 3n75_A          274 GIPQSEFQHATIAKRVKETPN-ATWPVHAVITNS-TYDGLLYNTDFIKKTLDVK--SIHFDSAWVPYTNFSPIYEGKCGM  349 (715)
T ss_dssp             CCCGGGGSHHHHHHHHHHSTT-CCSCSEEEEESS-CTTSEEECHHHHHHHCCCS--EEEEECTTCTTGGGSGGGTTSSTT
T ss_pred             CcccccCCHHHHHHHHhhCcC-ccCceEEEEECC-CCCCccCCHHHHHHHhCcC--cEEEccccccccccCCcccccccc
Confidence            23     89999999985311 112347777776 8999999999664 67655  37899987644100111  12211


Q ss_pred             ----CCcEE---EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccc
Q 007454          296 ----RPDFL---ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQE  368 (603)
Q Consensus       296 ----~~Dfl---v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  368 (603)
                          ++|++   +.|+||.+|+ |++.|.|.++++..  ...      +      ...                 ...  
T Consensus       350 ~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~--~~~------~------~~~-----------------~~~--  395 (715)
T 3n75_A          350 SGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVN--EET------F------NEA-----------------YMM--  395 (715)
T ss_dssp             SSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCC--HHH------H------HHH-----------------HHH--
T ss_pred             ccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhh--HHH------H------HHH-----------------HHh--
Confidence                26876   9999999887 88999999987631  000      0      000                 011  


Q ss_pred             cccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 007454          369 KVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWL  448 (603)
Q Consensus       369 ~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L  448 (603)
                      +.++++++++++++.                                        .|++++....-....+++..++.++
T Consensus       396 ~~STSpsy~~~Asld----------------------------------------aA~~~~~~~~g~~~~~~l~~~a~~~  435 (715)
T 3n75_A          396 HTTTSPHYGIVASTE----------------------------------------TAAAMMKGNAGKRLINGSIERAIKF  435 (715)
T ss_dssp             TSCSSCCHHHHHHHH----------------------------------------HHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHH----------------------------------------HHHHHHHhhccHHHHHHHHHHHHHH
Confidence            457889999887775                                        5777765322244667888899999


Q ss_pred             HHHHhcCC
Q 007454          449 VNALMKLQ  456 (603)
Q Consensus       449 ~~~L~~L~  456 (603)
                      +++|.+++
T Consensus       436 r~~L~~i~  443 (715)
T 3n75_A          436 RKEIKRLR  443 (715)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998764

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.24  E-value=1e-10  Score=130.08  Aligned_cols=108  Identities=11%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             HHcCCEEEEEeccC---CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHH-hCCcEEEEe
Q 007454          207 EKRGARVMSAEFSW---PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQ-ENDWHILID  278 (603)
Q Consensus       207 ~~~Ga~V~~~~~~~---~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~-e~g~~vlvD  278 (603)
                      +..|+++..++++.   .+..++.++|++.+.      +++++|.+...+|.||.++|.+.+    ++|+ ++|+++++|
T Consensus       211 ~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~D  284 (533)
T 3f6t_A          211 ELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD------PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD  284 (533)
T ss_dssp             GGGGSEEEEECCCEETTTTSEECHHHHHHHSC------TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHcCCeEEEEEecCCcccCCCCCHHHHHHHhC------CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEc
Confidence            34577777777642   346789999999885      368999998999999999999732    3566 589999999


Q ss_pred             ccccCCCCCCCCCCCC--CCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          279 ACALGPKDMDSFGLSL--VRPDFLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~--~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                      .++..-.. ....+..  .+.++++.|++|.||  +.|  +|+++++++
T Consensus       285 e~y~~~~~-~~~~~~~~~~~~~i~~~S~SK~~g--~~G~RiG~l~~~~~  330 (533)
T 3f6t_A          285 EVYGAFVP-NFKSIYSVVPYNTMLVYSYSKLFG--CTGWRLGVIALNEK  330 (533)
T ss_dssp             CTTGGGST-TCCCHHHHSGGGEEEEEESHHHHT--CGGGCEEEEEEESS
T ss_pred             CCcccccc-CccCHhhcCCCCEEEEecCcccCC--CcccceEEEEECcH
Confidence            98653210 1111111  234599999999999  669  899999987

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.22  E-value=1.3e-10  Score=120.98  Aligned_cols=146  Identities=13%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEeccCchHHHHHHH--------------------------HHHcCCEEEEEeccCCcc
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYESEAVEAMIRT--------------------------SEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~es~sV~~~~~~--------------------------a~~~Ga~V~~~~~~~~~g  223 (603)
                      ...++.|++|++++|.+.. +++..-++++...+..                          +...|+++..++.  +++
T Consensus        48 ~~~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~  124 (359)
T 3pj0_A           48 AVIEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT--ANQ  124 (359)
T ss_dssp             HHHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC--TTS
T ss_pred             HHHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC--cCC
Confidence            3467899999999998543 4332111122111111                          1234667766665  356


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc-cccccHHHH----HHHHhCCcEEEEeccccCCC----CCCCCCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT-GARYPYLWM----RIAQENDWHILIDACALGPK----DMDSFGLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T-G~~~pl~~i----~~a~e~g~~vlvDAaq~~~~----~m~~ldls~  294 (603)
                      .++.++|+++ .      +++++|.+...+|.+ |..+|.+.+    ++|+++|+++++|.++..+.    .....++. 
T Consensus       125 ~~d~~~l~~~-~------~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-  196 (359)
T 3pj0_A          125 LLTIDDIKSL-R------EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC-  196 (359)
T ss_dssp             CCCHHHHHTC-S------SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH-
T ss_pred             CcCHHHHHhc-c------CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh-
Confidence            7889888876 2      368899887777777 799998754    46899999999998865321    00011122 


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCc
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      .++|++++|+||+||. |.| |+++.++++++.+
T Consensus       197 ~~~d~~~~s~sK~~~~-~~g-g~~~~~~~l~~~~  228 (359)
T 3pj0_A          197 ALFDSVYVSFYKGIGG-IAG-AILAGNDDFVQEA  228 (359)
T ss_dssp             TTCSEEEEESSSTTCC-SSC-EEEEECHHHHHHH
T ss_pred             ccCCEEEEeccccCCC-cce-EEEECCHHHHHHH
Confidence            3689999999998876 766 7777777665444

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.19  E-value=1.8e-09  Score=119.12  Aligned_cols=263  Identities=14%  Similarity=0.079  Sum_probs=152.5

Q ss_pred             HHHHHcCCEEEEEeccCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEFSWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvD  278 (603)
                      ..++..|+++..++.+.. +..++.++|++.|...+. ..+++++++...+|.||.++|.+.    +++|+++|+++++|
T Consensus       196 ~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D  274 (498)
T 3ihj_A          196 AVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKD-HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD  274 (498)
T ss_dssp             HHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTT-TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhc-cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE
Confidence            344556777777777522 236899999999975321 125889999899999999999763    34689999999999


Q ss_pred             ccccCCC-C--CCCCCCCC----C------CCc-EEEEcccccC-CCCCCceEEEEE---eCCCCcCcCCCCCCCceecc
Q 007454          279 ACALGPK-D--MDSFGLSL----V------RPD-FLICSFYQIF-GENPSGFGCLFV---KKSTVPILVDNTSSGMVSLL  340 (603)
Q Consensus       279 Aaq~~~~-~--m~~ldls~----~------~~D-flv~S~hK~f-G~~P~G~G~L~v---kk~~~~~L~p~~~gG~v~~~  340 (603)
                      .+..... +  -....+..    +      .+. +++.|++|.| |.+-..+|.+.+   .+.+.+.+...         
T Consensus       275 e~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~---------  345 (498)
T 3ihj_A          275 EVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKL---------  345 (498)
T ss_dssp             CTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHH---------
T ss_pred             cCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHH---------
Confidence            9754321 0  00111111    1      122 5667999998 732123566654   22222212100         


Q ss_pred             ccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCch
Q 007454          341 PAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSE  420 (603)
Q Consensus       341 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  420 (603)
                            .                     -...+++.++..++..            .+.             ++..+.. 
T Consensus       346 ------~---------------------~~~~~~~~~~q~a~~~------------~l~-------------~~~~g~~-  372 (498)
T 3ihj_A          346 ------L---------------------SVRLCPPVSGQAAMDI------------VVN-------------PPVAGEE-  372 (498)
T ss_dssp             ------H---------------------HHSCCCCHHHHHHHHH------------HTC-------------CCCTTST-
T ss_pred             ------H---------------------hccCCCCHHHHHHHHH------------Hhc-------------CCccCcc-
Confidence                  0                     0012234444433321            000             0000000 


Q ss_pred             hHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE-EEccCCC-------C
Q 007454          421 IECRGL-DQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF-NVFDWKR-------E  491 (603)
Q Consensus       421 ~~~~al-d~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF-nv~~~~g-------~  491 (603)
                          .+ +++..  +..+.++++..++++.+.|.+++        .++++.|     .++.+.| .+.....       .
T Consensus       373 ----~~~~~~~~--~~~~~~~l~~~~~~l~~~L~~~~--------g~~~~~p-----~gg~~~~~~l~~p~~~~~~~~~~  433 (498)
T 3ihj_A          373 ----SFEQFSRE--KESVLGNLAKKAKLTEDLFNQVP--------GIHCNPL-----QGAMYAFPRIFIPAKAVEAAQAH  433 (498)
T ss_dssp             ----THHHHHHH--HHHHHHHHHHHHHHHHHHHHTST--------TEECCCC-----CBSSEECCEECCCHHHHHHHHHT
T ss_pred             ----cHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC--------CcEecCC-----CeEEEEEEeccCchhhhHHHHhc
Confidence                11 12221  35666778888899999998752        2666654     3555555 3431100       0


Q ss_pred             ccCHHH--HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHH
Q 007454          492 KIEPVL--VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFED  569 (603)
Q Consensus       492 ~v~~~~--V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eD  569 (603)
                      -+.+..  +.++++++||.++.|..|...                                 .+.+.+|+|++  .+.+|
T Consensus       434 g~~~~~~~~~~ll~~~gI~v~pG~~f~~~---------------------------------~~~~~~Ris~~--~~~e~  478 (498)
T 3ihj_A          434 QMAPDMFYCMKLLEETGICVVPGSGFGQR---------------------------------EGTYHFRMTIL--PPVEK  478 (498)
T ss_dssp             TSCHHHHHHHHHHHHHCBCCEEGGGTCCC---------------------------------TTCCBEEEECC--SCHHH
T ss_pred             CCCcHHHHHHHHHHHCCEEEEeCcccCCC---------------------------------CCCCEEEEEeC--CCHHH
Confidence            023333  577888899999998776431                                 11258999995  89999


Q ss_pred             HHHHHHHHHHHHhh
Q 007454          570 VYRLWAFVAQFLDA  583 (603)
Q Consensus       570 Vd~l~~~l~~~l~~  583 (603)
                      ++++++.|++++..
T Consensus       479 l~~~i~~L~~~~~~  492 (498)
T 3ihj_A          479 LKTVLQKVKDFHIN  492 (498)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998865

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.16  E-value=8.6e-10  Score=119.59  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=112.2

Q ss_pred             CccccccchHHHHHHHHHHHHHHHcCCCCCcEE---Eecc-------------------------CchHHHHH-------
Q 007454          159 KTQLLHGGQESGLESAMKKRIMDFLNISENDYV---YDYE-------------------------SEAVEAMI-------  203 (603)
Q Consensus       159 ~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~v---f~~e-------------------------s~sV~~~~-------  203 (603)
                      ++.+.|+...   .++.++++++++|++.. ++   |..-                         +.....+.       
T Consensus        65 ~~gy~y~~~~---~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~  140 (427)
T 3i16_A           65 SSGYGYGDIG---RDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSN  140 (427)
T ss_dssp             CCTTCTTCHH---HHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCS
T ss_pred             CCCCCCCHHH---HHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccch
Confidence            4455555443   45677889999998654 55   3211                         11111122       


Q ss_pred             -HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEE
Q 007454          204 -RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHI  275 (603)
Q Consensus       204 -~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~v  275 (603)
                       ..+++.|++++.++.+ +++.+|.++|+++|..    .++|+||.+..    .+|.||.+.|++.| ++|++  +|+++
T Consensus       141 ~~~l~~~G~~~~~v~~~-~~g~~D~e~l~~~l~~----~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~l  215 (427)
T 3i16_A          141 MGSLKEFGINYKQVDLK-EDGKPNLEEIEKVLKE----DESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIIC  215 (427)
T ss_dssp             SCCTGGGTCEEEECCCC-TTSSCCHHHHHHHHHT----CTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHcCCEEEEecCc-cCCCcCHHHHHHHhhC----CCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEE
Confidence             2344568888888887 4688999999999972    12689999998    89999999999865 58999  99999


Q ss_pred             EEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCC--CceEEEEEeCCCCcCcC
Q 007454          276 LIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENP--SGFGCLFVKKSTVPILV  329 (603)
Q Consensus       276 lvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P--~G~G~L~vkk~~~~~L~  329 (603)
                      ++|.++..+.  ...+.-.+++|+++.|+||+||+ +  ...|+++.++++++.+.
T Consensus       216 ivD~a~~~~~--~~~~p~~~gaDiv~~S~sK~lgg-~g~~~gG~i~~~~~li~~l~  268 (427)
T 3i16_A          216 FVDNCYGEFM--DTKEPTDVGADLIAGSLIKNIGG-GIAPTGGYLAGTKDCIEKTS  268 (427)
T ss_dssp             EEECTTTTTS--SSSCGGGGTCSEEEEETTSGGGT-TTCCSCEEEEECHHHHHHHH
T ss_pred             EEECCCcccc--ccCCccccCCeEEEecCcccCCC-CCCceEEEEEECHHHHHHHH
Confidence            9999987664  12222246899999999999983 1  23488888887765554

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.15  E-value=7.8e-10  Score=119.91  Aligned_cols=194  Identities=11%  Similarity=0.132  Sum_probs=129.7

Q ss_pred             HHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHH
Q 007454           94 DQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLES  173 (603)
Q Consensus        94 d~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~  173 (603)
                      .++|+ +|+++  ...+++++       ..|++++.+.....                 .+.++ .+.+.|+...   .+
T Consensus        29 ~~~~~-~~~~~--~~i~~~n~-------~~Vl~a~~~~~~~~-----------------~~~~~-~~gy~Y~~~g---~~   77 (427)
T 3hvy_A           29 NDVEK-EFKYY--DEIREYNQ-------LKVLKAFQEERISE-----------------SHFTN-SSGYGYNDIG---RD   77 (427)
T ss_dssp             HHHHH-HHHHH--HHHHHHHH-------HHHHHHHHHTTCCG-----------------GGSCC-CCTTCTTCHH---HH
T ss_pred             HHHHH-HHHHH--HHHHHhhH-------HHHHHHHHHHHHHH-----------------Hhccc-CcCCCCCchh---HH
Confidence            45555 58888  56778776       67888877643210                 01122 2333344332   56


Q ss_pred             HHHHHHHHHcCCCCCcEE---EeccCch-------------------------HHHHH--------HHHHHcCCEEEEEe
Q 007454          174 AMKKRIMDFLNISENDYV---YDYESEA-------------------------VEAMI--------RTSEKRGARVMSAE  217 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~v---f~~es~s-------------------------V~~~~--------~~a~~~Ga~V~~~~  217 (603)
                      +.++++++++|++.. ++   |..-+++                         ...+.        ..+++.|++++.++
T Consensus        78 ~Le~~lA~l~g~e~a-lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~  156 (427)
T 3hvy_A           78 SLDRVYANIFNTESA-FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVD  156 (427)
T ss_dssp             HHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECC
T ss_pred             HHHHHHHHHhCCCce-EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEec
Confidence            778899999998654 55   2211111                         11111        22345688888777


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEeccccCCC-CCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILIDACALGPK-DMDS  289 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~-~m~~  289 (603)
                      .  .++.+|.++|+++|...    ++|+||.+..    .+|.||.+.|++.+ ++|++  +|+++++|.+...+. ...+
T Consensus       157 ~--~~~~~d~e~l~~~i~~~----~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p  230 (427)
T 3hvy_A          157 L--KDGKVDINTVKEELKKD----DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEP  230 (427)
T ss_dssp             C--BTTBCCHHHHHHHHHHC----TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCG
T ss_pred             C--CCCCcCHHHHHHHhhCC----CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCC
Confidence            6  36789999999999731    2689999999    89999999999855 58999  899999999876664 1123


Q ss_pred             CCCCCCCCcEEEEcccccCCCC--CCceEEEEEeCCCCcCcC
Q 007454          290 FGLSLVRPDFLICSFYQIFGEN--PSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       290 ldls~~~~Dflv~S~hK~fG~~--P~G~G~L~vkk~~~~~L~  329 (603)
                      +   .+++|+++.|+||++|+.  |.| |+++.++++++.+.
T Consensus       231 ~---~~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~li~~l~  268 (427)
T 3hvy_A          231 T---DVGADIIAGSLIKNIGGGIATTG-GYIAGKEEYVTQAT  268 (427)
T ss_dssp             G---GGTCSEEEEETTSGGGTTTCCSC-EEEEECHHHHHHHH
T ss_pred             c---ccCCeEEEECCcccccccccceE-EEEEECHHHHHHHH
Confidence            3   357899999999999831  233 88888877665554

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.12  E-value=4.6e-09  Score=113.58  Aligned_cols=190  Identities=16%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|+++.      ++.++.+++++.+.+..                     +. +    ++. ..+..++..+.++
T Consensus        55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~---------------------~~-~----~~~-~~~~~~~la~~l~  107 (453)
T 2cy8_A           55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH---------------------GV-Q----YAA-SHPLEVRWAERIV  107 (453)
T ss_dssp             TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTT---------------------TC-S----SCS-SCHHHHHHHHHHH
T ss_pred             CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHh---------------------CC-C----CCC-CCHHHHHHHHHHH
Confidence            45679999655      34578888887764321                     00 0    011 2245567777777


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCC-------------------ccc-------------c
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWP-------------------RLR-------------I  225 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~-------------------~g~-------------i  225 (603)
                      +.++ .+++++|... ++++...+..++  ..+.+|...+..++                   .+.             .
T Consensus       108 ~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  186 (453)
T 2cy8_A          108 AAFP-SIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRPD  186 (453)
T ss_dssp             HHCT-TCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEECTT
T ss_pred             hhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCCC
Confidence            7776 5677777643 245554445432  12234444432111                   010             2


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D  298 (603)
                      +.++|++.|...   .+++++|.+....|.||.+.|    ++.+ ++|+++|+++++|.++.+-..  +..++.-...+|
T Consensus       187 d~~~le~~l~~~---~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~~~~d  263 (453)
T 2cy8_A          187 DIEGMREVFANH---GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLDVQPD  263 (453)
T ss_dssp             CHHHHHHHHHHH---GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHTCCCS
T ss_pred             CHHHHHHHHHhc---CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhCCCCc
Confidence            678898888631   125788888666677999988    8755 589999999999999862110  001111124589


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      ++++  -|.||. +..+|++++++++++.+.+
T Consensus       264 i~s~--sK~l~~-G~~~G~v~~~~~~~~~l~~  292 (453)
T 2cy8_A          264 LTCL--AKASAG-GLPGGILGGREDVMGVLSR  292 (453)
T ss_dssp             EEEE--EGGGGT-TSSCEEEEECHHHHTTSSS
T ss_pred             EEEE--ChhhhC-CcceEEEechHHHHHHhcc
Confidence            8755  499873 3468999999887665553

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.11  E-value=3.5e-09  Score=113.40  Aligned_cols=189  Identities=15%  Similarity=0.162  Sum_probs=116.7

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      .+..|+|.++.      ++.++.+++++.+.+..                     +. +    ++. ..+...+.+++++
T Consensus        50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~---------------------~~-~----~~~-~~~~~~~l~~~l~  102 (424)
T 2e7u_A           50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLER---------------------GL-T----FGA-PSPLEVALAKKVK  102 (424)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT---------------------CS-C----CSS-CCHHHHHHHHHHH
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHh---------------------CC-C----CCC-CCHHHHHHHHHHH
Confidence            45679998854      34578899987764321                     00 0    011 2345568889999


Q ss_pred             HHcCCCCCcEEEecc-CchHHHHHHHHH--HcCCEEEEEeccCCc----------------------c-------c----
Q 007454          181 DFLNISENDYVYDYE-SEAVEAMIRTSE--KRGARVMSAEFSWPR----------------------L-------R----  224 (603)
Q Consensus       181 ~~lna~~~e~vf~~e-s~sV~~~~~~a~--~~Ga~V~~~~~~~~~----------------------g-------~----  224 (603)
                      ++++ .+++++|... ++++...+..++  ..+.+|...+..++.                      +       .    
T Consensus       103 ~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~  181 (424)
T 2e7u_A          103 RAYP-FVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVL  181 (424)
T ss_dssp             HHCT-TCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEE
T ss_pred             HhCC-CCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeC
Confidence            9987 6677777653 345655555432  234455554322210                      1       0    


Q ss_pred             --cCHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCC-C-CCCCCCCCC
Q 007454          225 --INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPK-D-MDSFGLSLV  295 (603)
Q Consensus       225 --i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~-~-m~~ldls~~  295 (603)
                        .+.++|++.|...   .+++++|.+...++.||.+.|    ++.+ ++ +++|+++++|-++.+=. . +..++....
T Consensus       182 ~~~d~~~le~~l~~~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~~~  257 (424)
T 2e7u_A          182 EYNDPEGLREVLKRR---GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELLGL  257 (424)
T ss_dssp             CTTCHHHHHHHHHHH---GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHHTC
T ss_pred             CCCCHHHHHHHHHhC---CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHhCC
Confidence              2688899888631   125677777666666999988    8755 47 89999999999987211 0 001111123


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      .+|++  |+.|.||. ...+|++++++++++.+.+
T Consensus       258 ~~di~--s~sK~l~~-G~~~G~~~~~~~~~~~~~~  289 (424)
T 2e7u_A          258 KPDLV--TLGKILGG-GLPAAAYAGRREIMEKVAP  289 (424)
T ss_dssp             CCSEE--EECGGGGT-TSSCEEEEECHHHHTTBTT
T ss_pred             Ccchh--hhhhhhhC-CcceEEEEEcHHHHhhhcc
Confidence            58976  55699883 3458999999887665553

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.03  E-value=3.5e-09  Score=114.86  Aligned_cols=114  Identities=14%  Similarity=0.074  Sum_probs=86.9

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeC----ccccccccccHHHH-HHHHh--CCcEEEEe
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPL----HSRMTGARYPYLWM-RIAQE--NDWHILID  278 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~----~Sn~TG~~~pl~~i-~~a~e--~g~~vlvD  278 (603)
                      +++.|++++.+++++ ++.+|.++|+++|..      +|++|.+..    .++.+|.+.|++.+ ++|++  +|+++++|
T Consensus       135 ~~~~G~~~~~v~~~~-~~~~d~e~l~~~l~~------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD  207 (431)
T 3ht4_A          135 FKEYNIGYNAVPLTE-GGLVDFEAVAAAIHS------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD  207 (431)
T ss_dssp             SGGGTCEEEECCBCT-TSSBCHHHHHHHCCT------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHcCCEEEEeCCCC-CCCcCHHHHHhhcCC------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            345789999999875 688999999999863      689999986    55666666677644 57899  99999999


Q ss_pred             ccccCCCCCCCCCCCCCCCcEEEEcccccCCC--CCCceEEEEEeCCCCcCcC
Q 007454          279 ACALGPKDMDSFGLSLVRPDFLICSFYQIFGE--NPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       279 Aaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~--~P~G~G~L~vkk~~~~~L~  329 (603)
                      .++..+.  ...+...+++|+++.|++|++|+  .|.| |+++.++++++.+.
T Consensus       208 ea~~~~~--~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~  257 (431)
T 3ht4_A          208 NCYGEFI--EEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACA  257 (431)
T ss_dssp             CTTCTTS--SSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHH
T ss_pred             CCChhhc--cCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHH
Confidence            9987765  22333345799999999998542  1677 99999887665554

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.03  E-value=3.2e-09  Score=112.87  Aligned_cols=111  Identities=14%  Similarity=0.073  Sum_probs=76.2

Q ss_pred             HHHHHHcCCEEEEEecc-CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEE
Q 007454          203 IRTSEKRGARVMSAEFS-WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILI  277 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~-~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlv  277 (603)
                      ...++..|+++..+++. ..+..++.++|++.|...   .+++.+++++..+|.||.++|.+.   + ++|+++|+++++
T Consensus       145 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~  221 (409)
T 4eu1_A          145 ESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA---PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFV  221 (409)
T ss_dssp             HHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS---CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC---CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence            34556679999988873 135678999999999742   125788888999999999999763   3 468999999999


Q ss_pred             ecccc-CCCC-----CCCC-CC-CCCCCcEEEEcccccCCCCCCc--eEEE
Q 007454          278 DACAL-GPKD-----MDSF-GL-SLVRPDFLICSFYQIFGENPSG--FGCL  318 (603)
Q Consensus       278 DAaq~-~~~~-----m~~l-dl-s~~~~Dflv~S~hK~fG~~P~G--~G~L  318 (603)
                      |.+.. +...     ..++ .+ ....-.+++.|+.|.||  ..|  +|++
T Consensus       222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g--~~G~riG~~  270 (409)
T 4eu1_A          222 DMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG--LYGHRCGAL  270 (409)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS--CGGGCCEEE
T ss_pred             eccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc--CccCCceEE
Confidence            98733 2210     0001 01 11223367778999999  447  6776

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=98.86  E-value=1.2e-08  Score=111.01  Aligned_cols=115  Identities=13%  Similarity=-0.010  Sum_probs=81.1

Q ss_pred             HHHHHHHcCCEEEEEecc--CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEe
Q 007454          202 MIRTSEKRGARVMSAEFS--WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILID  278 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~--~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvD  278 (603)
                      +...+.-.|++.++++..  ...+.++.++|+++|...+  ...+.+|+.+.-.+-+|..-|++.| ++||++|+++|||
T Consensus       157 v~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~--~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD  234 (450)
T 3bc8_A          157 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN  234 (450)
T ss_dssp             HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcC--CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE
Confidence            334444457777777652  1367899999999997632  1245555555555556789999966 5899999999999


Q ss_pred             ccccCCCCCCCCC--C--CC---CCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          279 ACALGPKDMDSFG--L--SL---VRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       279 Aaq~~~~~m~~ld--l--s~---~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +|.. ++  ..+-  +  +.   -++|++++|.|||++. |+|.++|++|+
T Consensus       235 ~A~G-~~--~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a-~~~~~~l~~rd  281 (450)
T 3bc8_A          235 NAYG-LQ--SSKCMHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN  281 (450)
T ss_dssp             CTTT-TT--CHHHHHHHHHHHHHSCCCEEEEEHHHHHSC-CSSCEEEEESC
T ss_pred             CCCc-hh--hhhhHhHHHHHhcccCCCEEEECCccCCCc-hhccEEEEecC
Confidence            8644 33  1111  1  11   2799999999999887 99999999973

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=98.69  E-value=2e-07  Score=103.94  Aligned_cols=111  Identities=17%  Similarity=0.157  Sum_probs=79.1

Q ss_pred             HcCCEEEEEeccCCc-cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHH--HhCCcEEEEecc
Q 007454          208 KRGARVMSAEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIA--QENDWHILIDAC  280 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~-g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a--~e~g~~vlvDAa  280 (603)
                      ..|+++..++.+..+ ..++.++|++.+.      ++++++.+..-+|.||.++|.+.    ++.|  +++|+++++|.+
T Consensus       215 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~------~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~  288 (546)
T 2zy4_A          215 QYALEEVAINADPSLNWQYPDSELDKLKD------PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDV  288 (546)
T ss_dssp             TSCCEEEEEECBGGGTTBCCHHHHGGGGS------TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECT
T ss_pred             CCCcEEEEEecCcccCCCCCHHHHHHhhC------CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCc
Confidence            347888888875322 3488898887663      36889888899999999999763    3456  788999999998


Q ss_pred             ccCCCCCCCCCCCC--CCCcEEEEcccccCCCCCCc--eEEEEEeCC-CCcC
Q 007454          281 ALGPKDMDSFGLSL--VRPDFLICSFYQIFGENPSG--FGCLFVKKS-TVPI  327 (603)
Q Consensus       281 q~~~~~m~~ldls~--~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~-~~~~  327 (603)
                      ...... ....+..  .+.++++.|+.|.||  ..|  +|++++.+. +++.
T Consensus       289 y~~~~~-~~~s~~~~~~~~~i~~~S~SK~~g--~~GlRiG~~~~~~~~l~~~  337 (546)
T 2zy4_A          289 YGTFAD-DFQSLFAICPENTLLVYSFSKYFG--ATGWRLGVVAAHQQNVFDL  337 (546)
T ss_dssp             TGGGST-TCCCHHHHCGGGEEEEEESTTTTT--CGGGCEEEEEEESSCHHHH
T ss_pred             chhhcc-cCcCHHHhCCCCEEEEEeCccccC--CCCcceEEEEECCHHHHHH
Confidence            653221 1122211  135799999999999  458  799999886 4433

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=98.64  E-value=5.6e-06  Score=89.44  Aligned_cols=216  Identities=15%  Similarity=0.146  Sum_probs=123.9

Q ss_pred             CCCCCCCCCCChhHHHHHHHHHHhCCCCCCchhHHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCC
Q 007454           60 PDTQFTNHESLPSLQQSLTEFTKAYPQYFDTYQIDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSL  139 (603)
Q Consensus        60 ~~~~~~~~~~lp~l~~~~~~F~~~~p~y~~~~~vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~  139 (603)
                      ++..|+..++|...+....+.++          -+.-|+  --+|.   .|    |+-...|+.|++++-..+++-    
T Consensus        25 ~~~~~~~~~~l~~~Dpei~~~i~----------~E~~RQ--~~~ie---LI----ASEN~~S~aV~~a~gS~ltnK----   81 (490)
T 3ou5_A           25 ANRGWTGQESLSDSDPEMWELLQ----------REKDRQ--CRGLE---LI----ASENFCSRAALEALGSCLNNK----   81 (490)
T ss_dssp             ---CCSSCCCHHHHCHHHHHHHH----------HHHHHH--HHSEE---CC----TTCCCCCHHHHHHHTSGGGTC----
T ss_pred             cccccccccchhhhCHHHHHHHH----------HHHHHH--HcCce---Ee----cCCCcCCHHHHHHhcCccccc----
Confidence            34567777888665433322222          122333  23331   22    555678999999987655431    


Q ss_pred             CCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe--ccCchHHHH--HHHHHH------
Q 007454          140 PSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD--YESEAVEAM--IRTSEK------  208 (603)
Q Consensus       140 p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~--~es~sV~~~--~~~a~~------  208 (603)
                                   |.-+-|...+.-|.. ..+++.-++++..++||++..+|-..  ..|.+..-+  ..+.-+      
T Consensus        82 -------------YaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~il  148 (490)
T 3ou5_A           82 -------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIM  148 (490)
T ss_dssp             -------------CCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEE
T ss_pred             -------------ccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEE
Confidence                         122445444332332 46788889999999999998865211  111111000  000001      


Q ss_pred             -------------------------cCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH
Q 007454          209 -------------------------RGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL  263 (603)
Q Consensus       209 -------------------------~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~  263 (603)
                                               +-+++...+++..++.||.++++++....     +++|+++-+..+  =...|++
T Consensus       149 g~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~-----kPklIi~G~SaY--~r~id~~  221 (490)
T 3ou5_A          149 GLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-----RPRLIIAGTSAY--ARLIDYA  221 (490)
T ss_dssp             CBC----------------------------CBCEETTTTEECHHHHHHHHHHH-----CCSEEEECCSSC--CSCCCHH
T ss_pred             ecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhc-----CCCeEEECCccC--ccccCHH
Confidence                                     11233333455567899999999988753     578888776443  2467888


Q ss_pred             HHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          264 WMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       264 ~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      .++ +|.+.|+++++|+++..|-     -..||+    .+|+++.|-||-|.+ |. -|+++.|++.
T Consensus       222 ~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~----~ADvVTtTTHKTLrG-Pr-GG~Il~~~~~  282 (490)
T 3ou5_A          222 RMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG-AR-SGLIFYRKGV  282 (490)
T ss_dssp             HHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSSTTCS-CS-CEEEEEECSE
T ss_pred             HHHHHHhhcccEEEechhhhhhhhcccccCCccc----cceEEeccccccccC-CC-ceEEEecccc
Confidence            776 7999999999999765431     113553    389999999998776 76 3777777764

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=98.43  E-value=2.7e-06  Score=92.18  Aligned_cols=107  Identities=17%  Similarity=0.069  Sum_probs=70.6

Q ss_pred             cCCEEEEEec--cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccc-ccccccHHHH-HHHHhCCcEEEEeccccCC
Q 007454          209 RGARVMSAEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARYPYLWM-RIAQENDWHILIDACALGP  284 (603)
Q Consensus       209 ~Ga~V~~~~~--~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~-TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~  284 (603)
                      .|++.++++.  ++..+.++.++|+++|...   .....+++++..++. .|..-|++.| ++||++|++++||.| .++
T Consensus       182 ~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~---ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeA-hGa  257 (501)
T 3hl2_A          182 AGFEPVVIENVLEGDELRTDLKAVEAKVQEL---GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNA-YGV  257 (501)
T ss_dssp             TTCEEEEECEEEETTEEEECHHHHHHHHHHH---CGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECT-TCT
T ss_pred             cCCeEEEEeeeecccccCCCHHHHHHHHHhc---CCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCc-chh
Confidence            3566666654  2235788999999999853   112344444444333 4566899966 589999999999975 444


Q ss_pred             CCCCCCC--C--C--CCC-CcEEEEcccccCCCCCCceEEEEEeC
Q 007454          285 KDMDSFG--L--S--LVR-PDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       285 ~~m~~ld--l--s--~~~-~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      |  ..+.  +  +  ..+ +|+++.|.||++-- |.|-|+++.++
T Consensus       258 h--~~~~~~lp~sA~~~GrAD~vVqS~HK~llv-pIGG~ii~~~d  299 (501)
T 3hl2_A          258 Q--SSKCMHLIQQGARVGRIDAFVQSLDKNFMV-PVGGAIIAGFN  299 (501)
T ss_dssp             T--CHHHHHHHHHHHHHSCCCEEEEEHHHHHCC-CSSCEEEEESC
T ss_pred             h--hhhhhhhHHHHHhcCCCcEEEeccccccee-ecCceEEEeCC
Confidence            4  1111  0  1  134 99999999998665 88866666665

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.40  E-value=2.2e-05  Score=85.56  Aligned_cols=188  Identities=11%  Similarity=0.097  Sum_probs=107.5

Q ss_pred             CCceeeecCCC------CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGI------GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIM  180 (603)
Q Consensus       107 ~~~vYLDyaa~------tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia  180 (603)
                      ++.-|||+.+.      |--.+.+++++.+.+...        +         ..+.++          ....+.-++|+
T Consensus        85 dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~--------~---------~~~~~~----------~~~~~lae~l~  137 (454)
T 4ao9_A           85 DGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGG--------I---------NLTGHN----------LLEGRLARLIC  137 (454)
T ss_dssp             TCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTC--------S---------CCCSEE----------SSHHHHHHHHH
T ss_pred             CCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcC--------C---------CccCCc----------HHHHHHHHHHH
Confidence            67889999764      334678888876533210        0         001111          11224455677


Q ss_pred             HHcCCCCCcEEEec-cCchHHHHHHHHHHc--CCEEEEEeccC------------Cc---------cccCHHHHHHHHhh
Q 007454          181 DFLNISENDYVYDY-ESEAVEAMIRTSEKR--GARVMSAEFSW------------PR---------LRINSEKLRKMVVS  236 (603)
Q Consensus       181 ~~lna~~~e~vf~~-es~sV~~~~~~a~~~--Ga~V~~~~~~~------------~~---------g~i~~~~L~~~l~~  236 (603)
                      +.+. ..+.+.|.. -++++...++.++..  .-+|....=.+            +.         ..-+.+.+++.|..
T Consensus       138 ~~~p-~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~  216 (454)
T 4ao9_A          138 ERFP-QIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIER  216 (454)
T ss_dssp             HHST-TCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHH
T ss_pred             HhCC-CCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhh
Confidence            7774 234455542 345666666666531  12333321000            00         01267888888874


Q ss_pred             cCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCCCCCCCC---CCCCCcEEEEcccccC
Q 007454          237 KGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKDMDSFGL---SLVRPDFLICSFYQIF  308 (603)
Q Consensus       237 ~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl---s~~~~Dflv~S~hK~f  308 (603)
                      .   .+++..|.+--+....|.+.|    ++.+ ++|+++|+++++|=+|.+ .. .....   -...||+++++  |.+
T Consensus       217 ~---~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~-G~~~a~e~~gv~PDi~t~g--K~l  289 (454)
T 4ao9_A          217 H---GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RL-APHGLANKLGIRSDLTTLG--KYI  289 (454)
T ss_dssp             T---GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GG-STTCHHHHHTCCCSEEEEE--GGG
T ss_pred             c---CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CC-ccccchhccCCCCcEEEec--ccc
Confidence            2   124665665555566898888    6655 479999999999998874 21 22211   12469998776  644


Q ss_pred             CCCCCceEEEEEeCCCCcCcCC
Q 007454          309 GENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       309 G~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      |+ -.-+|++..++++++.+.|
T Consensus       290 gg-G~Piga~~~~~ei~~~~~~  310 (454)
T 4ao9_A          290 GG-GMSFGAFGGRADVMALFDP  310 (454)
T ss_dssp             GT-TSSCEEEEECHHHHGGGCT
T ss_pred             CC-CCcceeeeeHHHHHHHHhh
Confidence            32 1238999999998876654

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.38  E-value=0.00029  Score=76.75  Aligned_cols=213  Identities=16%  Similarity=0.203  Sum_probs=122.0

Q ss_pred             Cee-EEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccC-CCCC
Q 007454          243 QRG-LFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIF-GENP  312 (603)
Q Consensus       243 ~t~-Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~f-G~~P  312 (603)
                      ++. +++=|.+ ...|.+.|    ++.+ ++|+++|+++++|=+|.+ +..  |--...-...||+++++  |.. |+-|
T Consensus       226 ~iAAvivEPiq-g~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P  302 (456)
T 4atq_A          226 QVAAIIIEPIQ-GEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLP  302 (456)
T ss_dssp             GEEEEEECSSB-TTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSS
T ss_pred             ceEEEEecccc-CCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhh--hcccCcCC
Confidence            444 4444554 45788776    3444 378999999999998876 321  11111122469999987  543 3223


Q ss_pred             CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                        +|++.+++++++.+.+...|++          |                       .|  |   +++++         
T Consensus       303 --~~av~~~~~i~~~~~~~~~~~T----------f-----------------------~g--n---pla~a---------  333 (456)
T 4atq_A          303 --LSAITGRADLLDAVHPGGLGGT----------Y-----------------------GG--N---PVACA---------  333 (456)
T ss_dssp             --CEEEEEEHHHHTTSCTTSSCCS----------S-----------------------SS--C---HHHHH---------
T ss_pred             --ceeeEecHHHHhcccccCCCCC----------C-----------------------CC--C---hHHHH---------
Confidence              7999999988776665333322          1                       01  1   12221         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCceEE-Ee
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ--HPNTEGNALVK-IY  469 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~--h~~~~g~plv~-Iy  469 (603)
                         +++                         +.|+.+++-+   +.++++.+.++|.++|.+|.  ++.. +.|.|. |-
T Consensus       334 ---aal-------------------------a~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~-~~~~v~~VR  381 (456)
T 4atq_A          334 ---AAL-------------------------AAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAG-GGSVVGDIR  381 (456)
T ss_dssp             ---HHH-------------------------HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC------CEEEEE
T ss_pred             ---hhH-------------------------HHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccc-cCCceEEee
Confidence               011                         4677666543   45567777777777776652  1110 113331 21


Q ss_pred             CCCCCCCCCCEEEEEEccCCCCccCHHH---HHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccccccc
Q 007454          470 GPKIRFDRGPALAFNVFDWKREKIEPVL---VQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNR  546 (603)
Q Consensus       470 gp~~~~~rg~ivsFnv~~~~g~~v~~~~---V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  546 (603)
                            -+|-++++.+.+.....-+.+.   +.+.+-++|+.++..                         +        
T Consensus       382 ------G~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~-------------------------g--------  422 (456)
T 4atq_A          382 ------GRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTC-------------------------G--------  422 (456)
T ss_dssp             ------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEE-------------------------C--------
T ss_pred             ------ecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEec-------------------------C--------
Confidence                  2467888887553322112222   223333567665421                         0        


Q ss_pred             ccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          547 KDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       547 ~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                          .. ..+||+++-+-.|.||||++++.|.+.|.+
T Consensus       423 ----~~-~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          423 ----TY-GNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             ----TT-SCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                11 148999999999999999999999988764

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.36  E-value=3.2e-05  Score=84.71  Aligned_cols=230  Identities=14%  Similarity=0.123  Sum_probs=129.5

Q ss_pred             HHHHHHHhhcCCCCCCeeEEEEeCccccccccccH----HHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcE
Q 007454          228 EKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPY----LWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDF  299 (603)
Q Consensus       228 ~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl----~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Df  299 (603)
                      ++|++.|...  ...++..|.+.-+....|.+.|-    +.+. +|+++|+++++|=+|.+ |..  |--...-...||+
T Consensus       223 ~~l~~~i~~~--~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi  300 (473)
T 4e3q_A          223 RELEETIQRE--GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDA  300 (473)
T ss_dssp             HHHHHHHHHH--CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSE
T ss_pred             HHHHHHHHhh--CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCCh
Confidence            3555555432  12356667766666678987773    3443 78999999999988775 221  1111112346999


Q ss_pred             EEEcccccCC-C-CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          300 LICSFYQIFG-E-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       300 lv~S~hK~fG-~-~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      ++++  |-+| + -|  +|++.+++++++.+.+..-.        ...                    +  .-.+|.+ .
T Consensus       301 ~t~~--K~l~gG~~P--l~av~~~~~i~~~~~~~~~~--------~~~--------------------~--~hg~T~~-G  345 (473)
T 4e3q_A          301 IISS--KNLTAGFFP--MGAVILGPELSKRLETAIEA--------IEE--------------------F--PHGFTAS-G  345 (473)
T ss_dssp             EEEC--GGGGTTSSC--CEEEEECHHHHHHHHHHHHH--------HSC--------------------C--CCCCTTT-T
T ss_pred             HHhc--ccccCCCCC--cccccccHHHHHHhcccccc--------ccc--------------------c--ccCCCCC-C
Confidence            9876  6433 1 13  79999999887544321000        000                    0  0012211 1


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .+++.+            +++                         +.|+.+++-   .+.++++.+.++|.++|.+|..
T Consensus       346 npla~A------------aal-------------------------a~L~~i~~~---~l~~~~~~~g~~l~~~L~~l~~  385 (473)
T 4e3q_A          346 HPVGCA------------IAL-------------------------KAIDVVMNE---GLAENVRRLAPRFEERLKHIAE  385 (473)
T ss_dssp             CHHHHH------------HHH-------------------------HHHHHHHHS---SHHHHHHHHHHHHHHHHHHHTT
T ss_pred             Ccchhh------------hhh-------------------------hhhhhhccc---cHHHHHHHHHHHHHHHHHHHhc
Confidence            122222            011                         466666653   4556777888888888887742


Q ss_pred             CCCCCCceE-EEeCCCCCCCCCCEEEEEEccCCCCc--cC-----HHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHH
Q 007454          458 PNTEGNALV-KIYGPKIRFDRGPALAFNVFDWKREK--IE-----PVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDN  529 (603)
Q Consensus       458 ~~~~g~plv-~Iygp~~~~~rg~ivsFnv~~~~g~~--v~-----~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~  529 (603)
                           .|.| .|-      .+|-++++.+...+...  .+     ...+.+.+-++|+.++.                  
T Consensus       386 -----~~~v~~vR------G~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~------------------  436 (473)
T 4e3q_A          386 -----RPNIGEYR------GIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRP------------------  436 (473)
T ss_dssp             -----STTEEEEE------EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEE------------------
T ss_pred             -----CCCeeEEe------ecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEe------------------
Confidence                 2323 121      24667777763322111  11     11233333345554431                  


Q ss_pred             HHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Q 007454          530 VLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDADFV  586 (603)
Q Consensus       530 ~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~~f~  586 (603)
                                            .+ .+||+++-+..|.+|||++++.+.+.|++-+-
T Consensus       437 ----------------------~g-~~i~l~PPL~it~~eid~~~~~l~~al~~v~a  470 (473)
T 4e3q_A          437 ----------------------LG-QSVVLCPPFILTEAQMDEMFDKLEKALDKVFA  470 (473)
T ss_dssp             ----------------------ET-TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------------cC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                                  11 37999999999999999999999999987653

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=97.60  E-value=1e-07  Score=104.42  Aligned_cols=98  Identities=8%  Similarity=0.034  Sum_probs=65.4

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHH-HHHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWM-RIAQENDWHILIDACALGPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D  298 (603)
                      |.++|+++|...   .+++++|.+-...+.+|.+.|    ++.+ ++|+++|+++++|-++. ...  +..++.....||
T Consensus       219 d~~~l~~~l~~~---~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD  294 (465)
T 2yky_A          219 DVEGTADLLKRH---GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD  294 (465)
Confidence            467777777631   135666666554445998887    6655 47899999999999987 321  111222234588


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      +++  +-|++|. .-.+|+++.++++++.+.+
T Consensus       295 i~t--~sK~lg~-G~piG~v~~~~~i~~~l~~  323 (465)
T 2yky_A          295 LTT--LGKYIGG-GMSFGAFGGRRDLMERFDP  323 (465)
Confidence            775  4599983 2237999999998877765

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=97.60  E-value=0.0037  Score=67.19  Aligned_cols=99  Identities=14%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HH---HHHHhCCcEEEEecc-ccCCCC---CCCCC--
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WM---RIAQENDWHILIDAC-ALGPKD---MDSFG--  291 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i---~~a~e~g~~vlvDAa-q~~~~~---m~~ld--  291 (603)
                      +..++.+.+.+.+...   .+++.++..+..+|.||..++.+ |-   ..|++++++++.|-+ |-....   .....  
T Consensus       172 ~~~~d~~~~~~~l~~~---~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~  248 (420)
T 4h51_A          172 TVSLNFEGMKKDILAA---PDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAAR  248 (420)
T ss_dssp             GTEECHHHHHHHHHHS---CSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred             ccCCCHHHHHHHHhcc---CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHH
Confidence            3456788888877642   34678888888899999999997 43   357899999999975 322210   00000  


Q ss_pred             --CCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          292 --LSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       292 --ls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                        .+....=+++.||=|-||.  .|  +|+|.+.....
T Consensus       249 ~~~~~~~~~i~~~s~SK~~~~--~G~RvG~~~~~~~~~  284 (420)
T 4h51_A          249 LFARRGIEVLLAQSFSKNMGL--YSERAGTLSLLLKDK  284 (420)
T ss_dssp             HHHHTTCCCEEEEECTTTSCC--GGGCEEEEEEECSCH
T ss_pred             hHHhhCceEEEEecccccccc--ccCceEEEEecccCH
Confidence              0111123566799998884  36  99998876654

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=97.03  E-value=0.0014  Score=76.63  Aligned_cols=96  Identities=10%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             HHHHHHHhhcC--CCCCCeeEEEEeC-cccccccccc----HHHH-HHHHhCCcEEEEeccccC----CCCCCCCCCCCC
Q 007454          228 EKLRKMVVSKG--KKKKQRGLFVFPL-HSRMTGARYP----YLWM-RIAQENDWHILIDACALG----PKDMDSFGLSLV  295 (603)
Q Consensus       228 ~~L~~~l~~~~--~~~~~t~Lv~~~~-~Sn~TG~~~p----l~~i-~~a~e~g~~vlvDAaq~~----~~~m~~ldls~~  295 (603)
                      +.|++.|....  ....++..|.+=- +.+..|.+.|    ++.+ ++|+++|+++++|=+|.+    |+ |-....-..
T Consensus       577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~gv  655 (831)
T 4a0g_A          577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLGC  655 (831)
T ss_dssp             HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SSTHHHHSS
T ss_pred             HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-chhhHhcCC
Confidence            56777664210  0123455555554 3778888765    5544 478999999999965542    32 111111124


Q ss_pred             CCcEEEEcccccCCCCCCc---eEEEEEeCCCCcCcC
Q 007454          296 RPDFLICSFYQIFGENPSG---FGCLFVKKSTVPILV  329 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G---~G~L~vkk~~~~~L~  329 (603)
                      .||++++|  |-+|+   |   +|++++++++++.+.
T Consensus       656 ~PDiitls--K~L~g---G~~Plgav~~~~~i~~~~~  687 (831)
T 4a0g_A          656 KPDIACFA--KLLTG---GMVPLAVTLATDAVFDSFS  687 (831)
T ss_dssp             CCSEEEEC--GGGGT---TSSCCEEEEECHHHHHTTC
T ss_pred             CCcEEEEe--ccccc---CccCcEEEEECHHHHHHHh
Confidence            69988655  87752   4   599999998776554

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=95.93  E-value=0.072  Score=56.66  Aligned_cols=114  Identities=12%  Similarity=0.130  Sum_probs=73.1

Q ss_pred             HHHHHHcCCEEEEEec-cCCccccCHHHHHHHHhhcCCCCCCeeEEEE-eCccccccccccHHHH----HHHHhCCcEEE
Q 007454          203 IRTSEKRGARVMSAEF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYLWM----RIAQENDWHIL  276 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~-~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~pl~~i----~~a~e~g~~vl  276 (603)
                      ...++..|++++.+++ +..+..++.++|++.+...    ++++++.+ +--+|.||..++.+.+    +.|++++++|+
T Consensus       136 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~----~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi  211 (405)
T 3k7y_A          136 VNMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI----PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVII  211 (405)
T ss_dssp             HHHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS----CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEE
T ss_pred             HHHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC----CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEE
Confidence            3455678999999987 3224678999999999742    24566666 4457999999998733    35789999999


Q ss_pred             Eeccc--cCCCCCC----CC-CC-CCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          277 IDACA--LGPKDMD----SF-GL-SLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       277 vDAaq--~~~~~m~----~l-dl-s~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      .|-+-  +...+..    ++ .+ +...-=+++.||=|.||.+---+|.+++
T Consensus       212 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~  263 (405)
T 3k7y_A          212 FDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHI  263 (405)
T ss_dssp             EEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEE
T ss_pred             EecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEE
Confidence            99652  2211000    00 00 1111236678999999832223788764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	603
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	100.0
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.96
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.96
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.96
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.96
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.91
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.91
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.9
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.87
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.86
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.84
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.77
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.69
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.65
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.64
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.54
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.53
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.46
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.36
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.35
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.2
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.19
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.19
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.06
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.03
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.03
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.02
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.01
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.01
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	98.99
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	98.98
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.95
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	98.95
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	98.95
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	98.93
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	98.9
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	98.87
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	98.82
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	98.75
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	98.75
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	98.74
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	98.73
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.71
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	98.69
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	98.67
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	98.67
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	98.64
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	98.6
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	98.56
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	98.56
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	98.55
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	98.52
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.49
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	98.45
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.43
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.42
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	98.38
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.37
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	98.32
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	98.3
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	98.28
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.27
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	98.26
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.25
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	98.24
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	98.19
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.19
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	98.12
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	98.09
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	98.08
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	97.94
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	97.94
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	97.9
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	97.89
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	97.76
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	97.75
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	97.58
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	97.49
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	96.37
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	95.73

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-54  Score=460.24  Aligned_cols=362  Identities=19%  Similarity=0.264  Sum_probs=295.2

Q ss_pred             hHHHHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCc-cccccc
Q 007454           92 QIDQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKT-QLLHGG  166 (603)
Q Consensus        92 ~vd~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s-~~~~g~  166 (603)
                      ++|++|+ +||.|+.    ++.|||||+|+||+|++|++++.+++..                   .++||++ .+..|.
T Consensus         3 d~~~vR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~-------------------~~~n~~~~~~~~~~   62 (405)
T d1jf9a_           3 SVDKVRA-DFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRH-------------------GYAAVHRGIHTLSA   62 (405)
T ss_dssp             CHHHHHH-TCGGGGCEETTEECEECCTTTCCCCCHHHHHHHHHHHHH-------------------TCCCCSSCSSHHHH
T ss_pred             CHHHHHH-hChhcccCcCCCCeEEEeCccccCCCHHHHHHHHHHHHh-------------------ccCCCccchhHHHH
Confidence            7999999 6999942    1359999999999999999998876432                   2478875 355677


Q ss_pred             hHHHHHHHHHHHHHHHcCCC-CCcEEEe-----------------------------ccCc-hHHHHHHHHHHcCCEEEE
Q 007454          167 QESGLESAMKKRIMDFLNIS-ENDYVYD-----------------------------YESE-AVEAMIRTSEKRGARVMS  215 (603)
Q Consensus       167 ~~~~~~~~aR~~Ia~~lna~-~~e~vf~-----------------------------~es~-sV~~~~~~a~~~Ga~V~~  215 (603)
                      .+.+.++++|+.||++||+. +++++|.                             .||+ .+..+...+++.|++|++
T Consensus        63 ~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~  142 (405)
T d1jf9a_          63 QATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRV  142 (405)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEE
Confidence            78899999999999999975 4788763                             2343 345567778899999999


Q ss_pred             EeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC
Q 007454          216 AEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL  294 (603)
Q Consensus       216 ~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~  294 (603)
                      +|++ +++.++.+++++++.+      +|+||++++++|.||.++|+++| .+||++|++++|||+|++|+  .++|+++
T Consensus       143 ~~~~-~~g~~~~~~~~~~i~~------~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~--~~id~~~  213 (405)
T d1jf9a_         143 IPLN-PDGTLQLETLPTLFDE------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH--HPVDVQA  213 (405)
T ss_dssp             ECBC-TTSCBCGGGHHHHCCT------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHH
T ss_pred             ECCC-CCCcCCHHHHHHhccC------CcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccc--cccchhh
Confidence            9998 6899999999988864      79999999999999999999866 58999999999999999999  7999999


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCC-ceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSG-MVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG-~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      +++||+++|+|||||  |.|+|+||++++.+..+.|...++ .......... ....           ..+.+  +|.||
T Consensus       214 ~~~D~~~~s~hK~~G--p~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~r--~e~GT  277 (405)
T d1jf9a_         214 LDCDFYVFSGHKLYG--PTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEG-TTWT-----------KAPWR--FEAGT  277 (405)
T ss_dssp             HTCSEEEEEGGGTTS--CSSCEEEEECHHHHTTCCCSSCSSSSEEECCTTTC-CEEC-----------CTTGG--GCCSS
T ss_pred             cCCceeecccccccc--CCCceeeeechhhhcccCcccccccccCccccccc-cccc-----------cchhh--hcCCC
Confidence            999999999999998  999999999999887777655552 2221111110 0000           01244  78999


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      +|+++++++.                                        .|+++++++|++.|.+|.+.|.+++.+.|.
T Consensus       278 ~~~~~~~~l~----------------------------------------~al~~~~~~g~~~i~~~~~~L~~~~~~~l~  317 (405)
T d1jf9a_         278 PNTGGIIGLG----------------------------------------AALEYVSALGLNNIAEYEQNLMHYALSQLE  317 (405)
T ss_dssp             CCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHH----------------------------------------HHHHHHHHhChHHHHHHHHHHHHHHHhhhh
Confidence            9999999987                                        699999999999999999999999999998


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      .+        +.+.+++|.   +|+++|+|++++.+     +..+..+++.+||.+|+|++|+.+.           +..
T Consensus       318 ~~--------~~~~~~~~~---~r~~ivsf~~~~~~-----~~~~~~~L~~~gI~v~~G~~c~~~~-----------~~~  370 (405)
T d1jf9a_         318 SV--------PDLTLYGPQ---NRLGVIAFNLGKHH-----AYDVGSFLDNYGIAVRTGHHCAMPL-----------MAY  370 (405)
T ss_dssp             TS--------TTEEEESCT---TCCSEEEEEETTCC-----HHHHHHHHHHTTEECEEECTTCHHH-----------HHH
T ss_pred             cC--------CcccccCCc---CcCcEEEEEcCCCC-----HHHHHHHHHHCCcEEEccchhhhhH-----------HHh
Confidence            75        348899984   68999999998854     4567777889999999999997542           222


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      .                +. .|+||+|+|+|||.||||+|+++|++++.
T Consensus       371 ~----------------~~-~g~iRiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         371 Y----------------NV-PAMCRASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             T----------------TC-SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             c----------------CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            1                11 37999999999999999999999998864

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=4.7e-53  Score=453.89  Aligned_cols=363  Identities=18%  Similarity=0.247  Sum_probs=289.4

Q ss_pred             HHHHHhhccCcCC----CCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchH
Q 007454           94 DQIRAKEYYQLSL----SNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQE  168 (603)
Q Consensus        94 d~iR~~efp~L~~----~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~  168 (603)
                      ..||+ +||.|+.    +++|||||+|+||+|+.|++++.+++..                   .++||++. +..|..+
T Consensus         5 a~iR~-~FP~l~~~~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~-------------------~~~n~~s~~~~~~~~~   64 (408)
T d1t3ia_           5 ATVRQ-DFPILNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYEN-------------------DNANVHRGAHQLSVRA   64 (408)
T ss_dssp             HHHGG-GCGGGSCEETTEECEECBTTTCCCCCHHHHHHHHHHHHH-------------------TCCCC--CCSHHHHHH
T ss_pred             HHHHH-hCcccccccCCCCeEEeeCccccCCCHHHHHHHHHHHHh-------------------cCCCCCchhhHHHHHH
Confidence            46998 6999952    1259999999999999999998875431                   24788664 5667888


Q ss_pred             HHHHHHHHHHHHHHcCCCC-CcEEEe-----------------------------ccCchH-HHHHHHHHHcCCEEEEEe
Q 007454          169 SGLESAMKKRIMDFLNISE-NDYVYD-----------------------------YESEAV-EAMIRTSEKRGARVMSAE  217 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~-~e~vf~-----------------------------~es~sV-~~~~~~a~~~Ga~V~~~~  217 (603)
                      .++++++|+.|+++||+++ ++++|+                             .|+.++ ..+...+++.|++|..++
T Consensus        65 ~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~  144 (408)
T d1t3ia_          65 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ  144 (408)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeee
Confidence            8999999999999999986 555442                             234444 344566788899999999


Q ss_pred             ccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCC
Q 007454          218 FSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVR  296 (603)
Q Consensus       218 ~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~  296 (603)
                      .+ .++.++.++|++++.      ++|+||++++++|+||.++|+++|. +||++|++++|||+|++|+  .++|++.++
T Consensus       145 ~~-~~~~~~~~~l~~~~~------~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~--~~id~~~~~  215 (408)
T d1t3ia_         145 LD-EQESFDLEHFKTLLS------EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPH--YPLDVQLID  215 (408)
T ss_dssp             BC-TTSSBCHHHHHHHCC------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHT
T ss_pred             cc-ccccccHHHhhhccC------CCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccc--ccccccccC
Confidence            87 478889999998876      3799999999999999999999775 7999999999999999999  899999999


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      +||+++|+|||+|  |.|+|+||+|++....+.|...||.+........ +...+           .+.+  +|.||+|+
T Consensus       216 ~D~~~~s~hK~~g--p~G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~-~~~~~-----------~~~r--~e~Gt~~~  279 (408)
T d1t3ia_         216 CDWLVASGHKMCA--PTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDH-FTTGE-----------LPHK--FEAGTPAI  279 (408)
T ss_dssp             CSEEEEEGGGTTS--CTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSC-EEECC-----------TTGG--GCCSSCCH
T ss_pred             CceEEeccccccC--CCCccccccchhhhhcCCceecCCcccccccccc-cccCC-----------chhh--hcCCcHHH
Confidence            9999999999988  8899999999998766655444454322111111 10010           1244  79999999


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                      ++++++.                                        .|+++++++|+++|.+|...|.+++.+.|.+++
T Consensus       280 ~~~~~l~----------------------------------------~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~  319 (408)
T d1t3ia_         280 AEAIALG----------------------------------------AAVDYLTDLGMENIHNYEVELTHYLWQGLGQIP  319 (408)
T ss_dssp             HHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHH----------------------------------------HHHHHHHHcCHHHHHHHHHHHHhHHhhhhccCc
Confidence            9999987                                        699999999999999999999999999998763


Q ss_pred             CCCCCCCceEEEeCCCCC-CCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          457 HPNTEGNALVKIYGPKIR-FDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~-~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                              .++++|+... ..++++|+|++++.+     +..|.+.++++||.+|+|++|+.+..        .+   + 
T Consensus       320 --------~~~~~~~~~~~~~~~~iv~f~~~~~~-----~~~v~~~L~~~gI~v~~G~~c~~~~~--------~~---~-  374 (408)
T d1t3ia_         320 --------QLRLYGPNPKHGDRAALASFNVAGLH-----ASDVATMVDQDGIAIRSGHHCTQPLH--------RL---F-  374 (408)
T ss_dssp             --------TEEEESCCGGGSCBCSEEEEEETTBC-----HHHHHHHHHTTTEECBCSCTTCHHHH--------HH---T-
T ss_pred             --------cccccCCCccccCcceEEEEEeCCCC-----HHHHHHHHhhCCcEEecCcccccHHH--------Hh---h-
Confidence                    3899997632 457999999999854     45566777899999999999985421        11   0 


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                     + ..|+||+|+|+|||++|||+|+++|++.+.
T Consensus       375 ---------------~-~~g~vRiS~~~ynt~~did~li~~L~~~~~  405 (408)
T d1t3ia_         375 ---------------D-ASGSARASLYFYNTKEEIDLFLQSLQATIR  405 (408)
T ss_dssp             ---------------T-CCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------------c-CCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence                           1 136899999999999999999999998764

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.1e-44  Score=377.11  Aligned_cols=341  Identities=18%  Similarity=0.155  Sum_probs=264.9

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      +|||||+|++|+|+.|++++.+++..                   .++||++.+..+..+.+.++++|++|+++||++++
T Consensus         2 ~iyld~a~~~~~p~~v~ea~~~~~~~-------------------~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~   62 (376)
T d1eg5a_           2 RVYFDNNATTRVDDRVLEEMIVFYRE-------------------KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS   62 (376)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHT-------------------CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             EEEEECcccccCCHHHHHHHHHHHHH-------------------cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            69999999999999999998876432                   34899888777888889999999999999999999


Q ss_pred             cEEEec-----------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          189 DYVYDY-----------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       189 e~vf~~-----------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      |++|..                             ++.++..+.+.++++|++|+++|++ ++++++.++++++|++   
T Consensus        63 ~i~~~~~~T~~l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~-~~~~id~~~l~~~i~~---  138 (376)
T d1eg5a_          63 EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD-SRGVVKLEELEKLVDE---  138 (376)
T ss_dssp             GEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBC-TTSCBCHHHHHHHCCT---
T ss_pred             cEEEECCHHHHHHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCC-CCCeECHHHHHHhcCC---
Confidence            997742                             2334555567778899999999998 4899999999999964   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHHH-HH--HhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWMR-IA--QENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFG  316 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a--~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G  316 (603)
                         +|+||++++++|.||.++|++.+. ++  +..|+.++||++|.+|+  .++|+.++++||+++|+|||+|  |.|.|
T Consensus       139 ---~t~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~--~~~d~~~~~~D~~~~s~~K~~g--p~G~~  211 (376)
T d1eg5a_         139 ---DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGK--IPFSLEKLEVDYASFSAHKFHG--PKGVG  211 (376)
T ss_dssp             ---TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTT--SCCCCTTTCCSEEEEEGGGGTS--CTTCE
T ss_pred             ---CceEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccc--ccccccccCccceecccceeec--CCCce
Confidence               799999999999999999999775 44  55699999999999999  8999999999999999999998  89999


Q ss_pred             EEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhH
Q 007454          317 CLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEIS  396 (603)
Q Consensus       317 ~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~  396 (603)
                      +||++++..  ++|...||+.         +                 ..  ++.|+.++.+....+             
T Consensus       212 ~l~~~~~~~--~~p~~~g~~~---------~-----------------~~--~~~~~~~~~~~~~~~-------------  248 (376)
T d1eg5a_         212 ITYIRKGVP--IRPLIHGGGQ---------E-----------------RG--LRSGTQNVPGIVGAA-------------  248 (376)
T ss_dssp             EEEECTTSC--CCCSBCSSCT---------T-----------------TT--TBCSCCCHHHHHHHH-------------
T ss_pred             eEEeccCcc--cCCcccCCCC---------c-----------------cc--ccCCcccchhhhhHH-------------
Confidence            999999853  7777766431         0                 11  467888888876654             


Q ss_pred             HHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCC
Q 007454          397 EVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFD  476 (603)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~  476 (603)
                                                 .+.+... .+......+...+..++.++|..+.         ..++++.. ..
T Consensus       249 ---------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~-~~  290 (376)
T d1eg5a_         249 ---------------------------RAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLG---------AHIITPLE-IS  290 (376)
T ss_dssp             ---------------------------HHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTT---------CEECSCTT-SB
T ss_pred             ---------------------------HHhhccc-cchhhhhhhhhhhhhhhcccccccc---------cccccccc-cc
Confidence                                       2333332 3567778888889999999998753         23444432 45


Q ss_pred             CCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCE
Q 007454          477 RGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITV  556 (603)
Q Consensus       477 rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~  556 (603)
                      +..+++|++++.++     +.+.++++++||.+|+|++|+++....+     ++|.+.+.       .     .....++
T Consensus       291 ~~~~~~~~~~~~~~-----~~~~~~L~~~gI~vr~G~~c~~~~~~~~-----~~l~~~gi-------~-----~~~~~~~  348 (376)
T d1eg5a_         291 LPNTLSVSFPNIRG-----STLQNLLSGYGIYVSTSSACTSKDERLR-----HVLDAMGV-------D-----RRIAQGA  348 (376)
T ss_dssp             CTTEEEEECTTCCH-----HHHHHHHHHTTEECBC-----------------CHHHHTTC-------C-----HHHHHHE
T ss_pred             ccceeeeccCCCCH-----HHHHHHHhhCCeEEeCcchhcCCccchh-----HHHHHcCC-------C-----cccCCCE
Confidence            78899999999654     4577788999999999999998765543     44544421       0     0122368


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          557 VTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       557 VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ||+|+|+|||.||||+|+++|+++++
T Consensus       349 iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         349 IRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999986

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-42  Score=368.42  Aligned_cols=356  Identities=17%  Similarity=0.122  Sum_probs=275.4

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcc-ccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQ-LLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~-~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      .|||||+|+||+++.|++++.+++...                 ..++||++. +..|..+.+.++++|++||+++|+++
T Consensus         3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~-----------------~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~   65 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVAEKMMQFMTMD-----------------GTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADP   65 (391)
T ss_dssp             SEECBTTTCCCCCHHHHHHHHTTTSTT-----------------SCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhc-----------------cccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            699999999999999999999876531                 134788775 44577788999999999999999999


Q ss_pred             CcEEEec-----------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          188 NDYVYDY-----------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       188 ~e~vf~~-----------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      ++++|+.                             ++.++..+.+.+++.|++|..++.+ .++.++.++++++|++  
T Consensus        66 ~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~~~~~i~~--  142 (391)
T d1p3wa_          66 REIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQ-RNGIIDLKELEAAMRD--  142 (391)
T ss_dssp             GGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCC-TTSCCCHHHHHHHCCT--
T ss_pred             CcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCC-CCCeEcHHHHHHhCCC--
Confidence            9997742                             3445555566677889999999998 5789999999999964  


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEE
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGC  317 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~  317 (603)
                          +|+||++++++|.||.++|+++|. +||++|+++++|++|..|.  .++|+..+++||+++|+|||+|  |.|+|+
T Consensus       143 ----~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~--~~~d~~~~~~D~~~~s~~k~~g--~~g~g~  214 (391)
T d1p3wa_         143 ----DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK--LPIDLSQLKVDLMSFSGHKIYG--PKGIGA  214 (391)
T ss_dssp             ----TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTT--BCCCTTTSCCSEEEEESTTTTS--CSSCEE
T ss_pred             ----CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCC--ccccchhccccccccccccccC--CCceEE
Confidence                799999999999999999999774 8999999999999999998  7999999999999999999999  889999


Q ss_pred             EEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHH
Q 007454          318 LFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISE  397 (603)
Q Consensus       318 L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~  397 (603)
                      +|++++.+..+.|...||...                          ..  ++.|+.++++.++++              
T Consensus       215 ~~~~~~~~~~~~~~~~gg~~~--------------------------~~--~~~~~~~~~~~~~l~--------------  252 (391)
T d1p3wa_         215 LYVRRKPRVRIEAQMHGGGHE--------------------------RG--MRSGTLPVHQIVGMG--------------  252 (391)
T ss_dssp             EEECBTTBCCCCCSSCSSCTT--------------------------TT--TSCSCCCHHHHHHHH--------------
T ss_pred             EEEecchhcccCCcccCCccc--------------------------cC--cccCcchhhhhhhhh--------------
Confidence            999999988888776665310                          11  468899999988876              


Q ss_pred             HhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          398 VRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                                .+++...+. .....+|++.|..+|.++|.++.        .+.+..+. ...+
T Consensus       253 --------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~~--------~~~~~~~~-~~~~  296 (391)
T d1p3wa_         253 --------------------------EAYRIAKEE-MATEMERLRGLRNRLWNGIKDIE--------EVYLNGDL-EHGA  296 (391)
T ss_dssp             --------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTST--------TEEECSCT-TTSC
T ss_pred             --------------------------hhhhHHHHH-hhHHHHHHHHHHHHHHHHHHhhc--------Ceeecccc-cccC
Confidence                                      344444333 34456788899999999998763        25555543 2456


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      +.+++|.+++.+++     .+..  ...+|.+|+|++|.++...++     .++.+++..            ...+.|.|
T Consensus       297 ~~~~~~~~~~~~~~-----~~~~--~l~~i~v~~G~~c~~~~~~~~-----~~l~~~g~~------------~~~~~g~i  352 (391)
T d1p3wa_         297 PNILNVSFNYVEGE-----SLIM--ALKDLAVSSGSACTSASLEPS-----YVLRALGLN------------DELAHSSI  352 (391)
T ss_dssp             TTEEEEEETTSCHH-----HHHH--HTTTEECBCCCC------CCC-----HHHHHHTCC------------HHHHHTEE
T ss_pred             ceEEEEEeCCCChH-----HHHH--HhCCCEEEccccccCCccchh-----HHHHHcCCC------------ccccCCEE
Confidence            88999999886543     2322  236899999999998876654     455554311            11234799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhhhhhcccccccc
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFLDADFVEKARWRYT  594 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l~~~f~~~~~~~~~  594 (603)
                      |+|+|+|||.||||+|+++|++++.+.---..-|+++
T Consensus       353 RiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~  389 (391)
T d1p3wa_         353 RFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMY  389 (391)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHhh
Confidence            9999999999999999999999998754444556554

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=5.5e-42  Score=361.77  Aligned_cols=342  Identities=14%  Similarity=0.153  Sum_probs=262.3

Q ss_pred             hccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHH
Q 007454          100 EYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRI  179 (603)
Q Consensus       100 efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~I  179 (603)
                      |||.|  ++.|||||+++||.|..|++++.+++..                   ...|++.....+....+.++++|+.+
T Consensus         1 ~fp~l--~~~~yld~~~~~~~p~~v~ea~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~r~~l   59 (381)
T d1elua_           1 QFPGL--ANKTYFNFGGQGILPTVALEAITAMYGY-------------------LQENGPFSIAANQHIQQLIAQLRQAL   59 (381)
T ss_dssp             CCGGG--TTSEECCTTTCCCCCHHHHHHHHHHHHH-------------------HHHHCSSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCC--CCCEEeeCCcccCCCHHHHHHHHHHHHH-------------------hhcCCCccchhhHHHHHHHHHHHHHH
Confidence            69999  7899999999999999999998765321                   12333333333344567899999999


Q ss_pred             HHHcCCCCCcEEEec--------------------------cCchHH-HHHHHHHHcCCEEEEEeccCCcccc-C-HHHH
Q 007454          180 MDFLNISENDYVYDY--------------------------ESEAVE-AMIRTSEKRGARVMSAEFSWPRLRI-N-SEKL  230 (603)
Q Consensus       180 a~~lna~~~e~vf~~--------------------------es~sV~-~~~~~a~~~Ga~V~~~~~~~~~g~i-~-~~~L  230 (603)
                      |+++|+++++++|+.                          ++.++. .+...+++.|+++..++.+. .... + .+.|
T Consensus        60 a~~~~~~~~~i~~~~g~t~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~~~l  138 (381)
T d1elua_          60 AETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAA-TLNQGDAAAVL  138 (381)
T ss_dssp             HHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGG-GSSSSCHHHHH
T ss_pred             HHHhCCCcccEEEECChHHHhhhcchhhhhcCCceEEEeccccceeeecccccccccccccccccccc-ccccchHHHHH
Confidence            999999999997742                          333433 34455677899999998752 2221 1 3334


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHh----CCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQE----NDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e----~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      ++.+      +++|+++++++++|+||.++|+++|. +|++    .|+.+++|++|.+|+  .++|++++++||+++|+|
T Consensus       139 ~~~i------~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~--~~~~~~~~~~D~~~~s~~  210 (381)
T d1elua_         139 ANHL------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS--LPLDFSRLEVDYYAFTGH  210 (381)
T ss_dssp             HTTC------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT--BCCCTTTSCCSEEEEESS
T ss_pred             Hhhh------cccccccccccccccccccchhhHHHHHHhhccccccccccccccccccc--cccccccccccccccccc
Confidence            4333      35899999999999999999999774 7876    479999999999998  799999999999999999


Q ss_pred             ccCCCCCCceEEEEEeCCCCcCcCCCCCC-Cceecccccc-ccccccccCCCCCCcccCcccccccccCCCChhhhhhhh
Q 007454          306 QIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKK-QLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE  383 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~  383 (603)
                      ||||+ |.|+|+||+|++....++|...| +.+....... ..+          .   ..+.+  ++.||+++.+++++.
T Consensus       211 K~~~~-p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----------~---~~~~~--~~~gt~~~~~~~~~~  274 (381)
T d1elua_         211 KWFAG-PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGW----------A---EGGKR--FEVATSAYPQYAGLL  274 (381)
T ss_dssp             STTCC-CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEE----------C---SGGGG--GCCSCCCHHHHHHHH
T ss_pred             ccccc-cchhhHHHhhHHHHHhcCcccccccccccccccccccc----------c---ccccc--cccccccchhhhhhh
Confidence            99987 89999999999999989988877 3332111100 000          0   01233  689999999998876


Q ss_pred             hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007454          384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL-TMISRRGRCLINWLVNALMKLQHPNTEG  462 (603)
Q Consensus       384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl-~~i~~r~~~L~~~L~~~L~~L~h~~~~g  462 (603)
                                                              +|++.++++|. +.+.++.+.+.++|.++|.++++     
T Consensus       275 ----------------------------------------~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~-----  309 (381)
T d1elua_         275 ----------------------------------------AALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPH-----  309 (381)
T ss_dssp             ----------------------------------------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTT-----
T ss_pred             ----------------------------------------hhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCC-----
Confidence                                                    68998888886 45568999999999999999853     


Q ss_pred             CceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhccccccc
Q 007454          463 NALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKS  542 (603)
Q Consensus       463 ~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~  542 (603)
                         ++++++.  ..++++|+|++.++.    +.+.+.++++++||.+|+-                              
T Consensus       310 ---~~~~~~~--~~~~~~vsf~~~~~~----~~~~i~~~L~~~gi~v~~~------------------------------  350 (381)
T d1elua_         310 ---VHCLATS--APQAGLVSFTVDSPL----GHRAIVQKLEEQRIYLRTI------------------------------  350 (381)
T ss_dssp             ---EEESCSS--CCSSSEEEEEECSSS----CHHHHHHHHHHTTEECEEE------------------------------
T ss_pred             ---eEecCCC--CccccEEEEEcCCCC----CHHHHHHHHHhCCcEEEec------------------------------
Confidence               8999975  358999999998753    4566777778899988631                              


Q ss_pred             ccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          543 DNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       543 ~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                               ...++||+|+|+|||.||||+|+++|++|
T Consensus       351 ---------~~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         351 ---------ADPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             ---------TTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             ---------CCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence                     01268999999999999999999999876

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=4e-42  Score=364.89  Aligned_cols=356  Identities=14%  Similarity=0.164  Sum_probs=259.6

Q ss_pred             HHHHHHhhccCcCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHH
Q 007454           93 IDQIRAKEYYQLSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLE  172 (603)
Q Consensus        93 vd~iR~~efp~L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~  172 (603)
                      +..+|+ +||.+  ++.|||||+++||.|+.|++++.+++..                   .++|++.....+..+.+++
T Consensus        15 l~~~R~-~F~~~--~~~iYLd~as~g~~p~~v~~a~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~   72 (404)
T d1qz9a_          15 LAPLRQ-QFALP--EGVIYLDGNSLGARPVAALARAQAVIAE-------------------EWGNGLIRSWNSAGWRDLS   72 (404)
T ss_dssp             TGGGGG-GBCCC--TTCEECCTTTSCCCBTTHHHHHHHHHHT-------------------CCCCCGGGHHHHTSGGGHH
T ss_pred             HHHHHh-cCCCC--CCCEEcCCcccccCCHHHHHHHHHHHHH-------------------HhcccCcccccchhHHHHH
Confidence            456787 69987  7899999999999999999998876532                   1244443333333456788


Q ss_pred             HHHHHHHHHHcCCCCCcEEEeccC-chHHHHH------HHHHHcCCEEEEEeccC--------------------Ccccc
Q 007454          173 SAMKKRIMDFLNISENDYVYDYES-EAVEAMI------RTSEKRGARVMSAEFSW--------------------PRLRI  225 (603)
Q Consensus       173 ~~aR~~Ia~~lna~~~e~vf~~es-~sV~~~~------~~a~~~Ga~V~~~~~~~--------------------~~g~i  225 (603)
                      +++|++||+++|++++|++|+... ++++.++      +.....|..|....-..                    ..+.+
T Consensus        73 e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (404)
T d1qz9a_          73 ERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVD  152 (404)
T ss_dssp             HHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEES
T ss_pred             HHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccc
Confidence            999999999999999999987532 2222111      11123444444433210                    13445


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +.++++++|.      ++|+||++++++|+||.++|+++|. +|+++|+.++||++|.+|+  .++|++.+++||+++|+
T Consensus       153 ~~~~~~~~i~------~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~--~~~~~~~~~~d~~~~s~  224 (404)
T d1qz9a_         153 SPEELPQAID------QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA--VPVDLHQAGADYAIGCT  224 (404)
T ss_dssp             SGGGHHHHCS------TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCHHHHTCSEEEECS
T ss_pred             cchhHHHhcC------CCceEEEEecccccccceecHHHHhccccccccceeEEeeccccc--cccccccccceEEEEec
Confidence            6667777765      4799999999999999999999775 7999999999999999999  79999999999999999


Q ss_pred             cccCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhh
Q 007454          305 YQIFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIE  383 (603)
Q Consensus       305 hK~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~  383 (603)
                      |||++++|.|.|++|+++...+.+.+...+ |+..........          .... ..+.+  ++.||++..+++.+.
T Consensus       225 ~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~--~~~~~~~~~~~~~~~  291 (404)
T d1qz9a_         225 YKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPR----------YEPS-NGIAR--YLCGTQPITSLAMVE  291 (404)
T ss_dssp             SSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSS----------CCBC-SSGGG--GCCSCCCHHHHHHHH
T ss_pred             hhhcccCCceEEEEEechhhhhhCCccccccCCcccccccccc----------cccc-ccchh--hhhhhccchhHHHHH
Confidence            999765476789999999988777655444 222110000000          0000 11233  689999999888776


Q ss_pred             hhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 007454          384 MRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGN  463 (603)
Q Consensus       384 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~  463 (603)
                                                              .+++++..+|++.|.++.+.+.+++...+..+..     .
T Consensus       292 ----------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~-----~  326 (404)
T d1qz9a_         292 ----------------------------------------CGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA-----A  326 (404)
T ss_dssp             ----------------------------------------HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT-----T
T ss_pred             ----------------------------------------HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc-----C
Confidence                                                    5888888899999999999999887776655431     3


Q ss_pred             ceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccc
Q 007454          464 ALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSD  543 (603)
Q Consensus       464 plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~  543 (603)
                      +.++|+||.....|+++|+|++++       ...|.+.++++||.+.   +|                            
T Consensus       327 ~~~~i~~p~~~~~r~~~vsf~~~~-------~~~v~~~L~~~gi~~~---~r----------------------------  368 (404)
T d1qz9a_         327 HELTLVTPREHAKRGSHVSFEHPE-------GYAVIQALIDRGVIGD---YR----------------------------  368 (404)
T ss_dssp             SCCEECSCSSGGGBCSEEEEECTT-------HHHHHHHHHTTTEECE---EE----------------------------
T ss_pred             CCEEEECCCCccceeeEEEEecCC-------HHHHHHHHHHCCCEEe---ec----------------------------
Confidence            458999998777899999999875       2334444567898532   11                            


Q ss_pred             cccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454          544 NNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       544 ~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~  583 (603)
                               ..++||+||+ +|||.+|||+|+++|+++|+.
T Consensus       369 ---------~~~~lRiS~~h~ynt~~did~~~~~L~~vl~~  400 (404)
T d1qz9a_         369 ---------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR  400 (404)
T ss_dssp             ---------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence                     1258999996 689999999999999999875

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=286.92  Aligned_cols=334  Identities=14%  Similarity=0.056  Sum_probs=243.2

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC-c
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN-D  189 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~-e  189 (603)
                      +|=..|-+++++.|++++.....                          + | -+....++++++|+.++++||++.+ +
T Consensus        21 ~l~~pGP~~~~~~Vl~am~~~~i--------------------------~-H-Rs~~f~~i~~ea~~~l~~llg~~~~~~   72 (388)
T d1h0ca_          21 LLLGPGPSNLPPRIMAAGGLQMI--------------------------G-S-MSKDMYQIMDEIKEGIQYVFQTRNPLT   72 (388)
T ss_dssp             EECSSSCCCCCHHHHHHHTCCCC--------------------------C-T-TSHHHHHHHHHHHHHHHHHHTCCCSEE
T ss_pred             ccccCCCCCCCHHHHHHhCcCCC--------------------------C-C-CCHHHHHHHHHHHHHHHHHhCCCCCcE
Confidence            55557777899999999754210                          0 1 1234578999999999999999765 5


Q ss_pred             EEEec-------------------------cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          190 YVYDY-------------------------ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       190 ~vf~~-------------------------es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      ++|+-                         ++.+. .+...++..+..+..+..++ ...++.+++++.+..     .++
T Consensus        73 ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~  145 (388)
T d1h0ca_          73 LVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQ-RAVDIGERIGARVHPMTKDP-GGHYTLQEVEEGLAQ-----HKP  145 (388)
T ss_dssp             EEESSCHHHHHHHHHHHHCCSSCCEEECBSSHHHH-HHHHHHHHHC--CBCCBCCT-TCCCCHHHHHHHHHH-----HCC
T ss_pred             EEEcCcHHHHHHHHHHHhhccCCceeeecccceee-eeccccccccccccccccCC-ccccchHHHHHHhcc-----CCc
Confidence            66641                         11122 22344556677777777775 567888888887764     268


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +++++++++|.||.++|++.| ++|+++|+++++|++|++|+  .++|++.+++||+++|+|||+|+ |.|+|++++++.
T Consensus       146 ~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~--~~~d~~~~~~D~~~~s~~K~~~g-p~g~~~~~~~~~  222 (388)
T d1h0ca_         146 VLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGG--TPLYMDRQGIDILYSGSQKALNA-PPGTSLISFSDK  222 (388)
T ss_dssp             SEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTT--SCCCTTTTTCSEEEEESSSTTCC-CTTCEEEEECHH
T ss_pred             ceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccc--ccccccccccceecccccccccC-CCceEEEeecHH
Confidence            999999999999999999955 58999999999999999999  79999999999999999999986 899999999988


Q ss_pred             CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454          324 TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA  403 (603)
Q Consensus       324 ~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~  403 (603)
                      .++.+.+...++... ............     ..    ...+  ++.||+++.+++++.                    
T Consensus       223 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~----~~~~--~~~~t~~~~~~~~~~--------------------  270 (388)
T d1h0ca_         223 AKKKMYSRKTKPFSF-YLDIKWLANFWG-----CD----DQPR--MYHHTIPVISLYSLR--------------------  270 (388)
T ss_dssp             HHHHHTTCSSCCSCS-TTCHHHHHHHTT-----CS----SSCC--CCCSCCCHHHHHHHH--------------------
T ss_pred             HHHhhhhcccccccc-ccccchhhhhhh-----hc----cccc--cccccccHHHHHHHH--------------------
Confidence            766555433321100 000000000000     00    0112  568999999998876                    


Q ss_pred             hhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE
Q 007454          404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF  483 (603)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF  483 (603)
                                          .+++++.+.|++.+.++.+.|.+++++.+..+.         ..++.+....+...+++|
T Consensus       271 --------------------~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g---------~~~~~~~~~~rs~~i~~~  321 (388)
T d1h0ca_         271 --------------------ESLALIAEQGLENSWRQHREAAAYLHGRLQALG---------LQLFVKDPALRLPTVTTV  321 (388)
T ss_dssp             --------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT---------CCBSSCSGGGBCTTEEEE
T ss_pred             --------------------HHHHHHHHhccccccccccchhHHHHHHHhhcC---------cccccCCHHHcCCeEEEE
Confidence                                688999899999999999999999999998763         122333322345678999


Q ss_pred             EEcc-CCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe-c
Q 007454          484 NVFD-WKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS-L  561 (603)
Q Consensus       484 nv~~-~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S-l  561 (603)
                      ++++ .++    .+++++|.+++||.++.|..|.                                    ..++|||| +
T Consensus       322 ~~p~~~~~----~~~~~~L~~~~gI~v~~G~~~~------------------------------------~~~~iRis~~  361 (388)
T d1h0ca_         322 AVPAGYDW----RDIVSYVIDHFDIEIMGGLGPS------------------------------------TGKVLRIGLL  361 (388)
T ss_dssp             ECCTTCCH----HHHHHHHHHHHCEECEECCGGG------------------------------------TTTEEEEECC
T ss_pred             ECCCCCCH----HHHHHHHHhcCCEEEeCCchhh------------------------------------cCCEEEEeCC
Confidence            9964 332    2345777788899999996541                                    12589999 8


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Q 007454          562 GYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |+++|.||||+|+++|+++|++
T Consensus       362 g~~~t~edid~li~aL~~~L~~  383 (388)
T d1h0ca_         362 GCNATRENVDRVTEALRAALQH  383 (388)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.96  E-value=5.5e-29  Score=260.10  Aligned_cols=332  Identities=14%  Similarity=0.075  Sum_probs=237.2

Q ss_pred             CceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCC
Q 007454          108 NHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISE  187 (603)
Q Consensus       108 ~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~  187 (603)
                      +..||...|-+++|+.|+++|.....                            +..+....++++++|+.++++||+++
T Consensus        17 p~~~l~~PGP~~v~~~Vl~am~~~~~----------------------------~hr~~ef~~i~~~~r~~l~~ll~~~~   68 (377)
T d1vjoa_          17 PSRLLLGPGPSNAHPSVLQAMNVSPV----------------------------GHLDPAFLALMDEIQSLLRYVWQTEN   68 (377)
T ss_dssp             CCCEECSSSCCCCCHHHHHHHSSCCC----------------------------CTTSHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcceeecCCCCCCCHHHHHHhCcCCC----------------------------CCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence            45699999999999999999854210                            01244567899999999999999976


Q ss_pred             Cc-EEEecc-C-----------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          188 ND-YVYDYE-S-----------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       188 ~e-~vf~~e-s-----------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      ++ ++|... +                       ..-.++...++..+..+......+ +.....+..+.....     .
T Consensus        69 ~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~  142 (377)
T d1vjoa_          69 PLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALET-----H  142 (377)
T ss_dssp             SCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHH-----H
T ss_pred             CeEEEEcCcHHHHHHHHHHhccccccccceeeechhhhhhhhhhhhhcccccccccCC-CCcccchhhhhhhhc-----C
Confidence            54 444211 0                       011223344556677777776654 344455555555443     2


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ++.++++++++|.||+++|++.+ +++|++|..++|||+|+.|+  .++|++.+++||+++|+|||+++ |.|+|+++++
T Consensus       143 ~~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~--~~~~~~~~~~d~~~~s~~K~~~g-p~g~~~~~~~  219 (377)
T d1vjoa_         143 RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG--VPIFLDAWGVDLAYSCSQKGLGC-SPGASPFTMS  219 (377)
T ss_dssp             CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEEECCSSSTTCS-CSSCEEEEEC
T ss_pred             cceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhh--hhhcccccccceeeecccccccC-CCEEEEecch
Confidence            68999999999999999999854 68999999999999999998  79999999999999999998776 8899999999


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +..++...+...++.. ............      .      ...  +..+|+++..+.++.                  
T Consensus       220 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~------~~~--~~~~~~~~~~~~~l~------------------  266 (377)
T d1vjoa_         220 SRAIEKLQRRRTKVAN-WYLDMNLLGKYW------G------SER--VYHHTAPINLYYALR------------------  266 (377)
T ss_dssp             HHHHHHHHTCSSCCSC-STTCHHHHHHHH------S------TTC--CCCSCCCHHHHHHHH------------------
T ss_pred             hhHHhhhhccCCCCcc-eeeccchhhhcc------C------ccc--ccccccceechhhhH------------------
Confidence            9876544443222211 000000000000      0      011  457778887776654                  


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL  481 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv  481 (603)
                                            .+...+...|++.+.++.+.+.+++++.|.+..         ..+++++. .+...++
T Consensus       267 ----------------------~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~~~-~rs~~v~  314 (377)
T d1vjoa_         267 ----------------------EALRLIAQEGLANCWQRHQKNVEYLWERLEDIG---------LSLHVEKE-YRLPTLT  314 (377)
T ss_dssp             ----------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT---------CCBSSCGG-GBCSSEE
T ss_pred             ----------------------HHHhhhhhcCchHHHHHHHHHhhhhhhhhhccC---------ceeecChH-hcCCeEE
Confidence                                  566777778999999999999999999998752         23444432 3557788


Q ss_pred             EEEEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe
Q 007454          482 AFNVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS  560 (603)
Q Consensus       482 sFnv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S  560 (603)
                      +|++++.    +++. ++.+|++++||.++.|..|.                                    ..++||||
T Consensus       315 ~~~~p~~----~~~~~l~~~L~~~~gI~v~~G~~~~------------------------------------~~~~~Ris  354 (377)
T d1vjoa_         315 TVCIPDG----VDGKAVARRLLNEHNIEVGGGLGEL------------------------------------AGKVWRVG  354 (377)
T ss_dssp             EEECCTT----CCHHHHHHHHHHHHCEECEECCGGG------------------------------------TTTEEEEE
T ss_pred             EEECCCC----CCHHHHHHHHHhcCCEEEecCcccc------------------------------------cCCEEEEe
Confidence            9999652    3343 45677888999999985431                                    12589999


Q ss_pred             -cCCCCCHHHHHHHHHHHHHHH
Q 007454          561 -LGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       561 -lg~~tt~eDVd~l~~~l~~~l  581 (603)
                       +|++||.|||++|+++|+++|
T Consensus       355 ~~g~~~t~edi~~lv~al~~~l  376 (377)
T d1vjoa_         355 LMGFNSRKESVDQLIPALEQVL  376 (377)
T ss_dssp             CCGGGCSHHHHHHHHHHHHHHH
T ss_pred             cCcCCCCHHHHHHHHHHHHHHh
Confidence             699999999999999999987

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=1.6e-28  Score=255.40  Aligned_cols=300  Identities=13%  Similarity=0.085  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCCcE--EEecc-CchHHH-----------------------HHHHHHHcCCEEEEEeccCC
Q 007454          168 ESGLESAMKKRIMDFLNISENDY--VYDYE-SEAVEA-----------------------MIRTSEKRGARVMSAEFSWP  221 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna~~~e~--vf~~e-s~sV~~-----------------------~~~~a~~~Ga~V~~~~~~~~  221 (603)
                      ..++++++|+++++++|+++++.  +|+-. +.++..                       ....++..+.++....... 
T Consensus        31 ~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  109 (361)
T d1m32a_          31 NIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-  109 (361)
T ss_dssp             HTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhhhhccccceeeehhhhhhHHHHhhhhhcccccccccc-
Confidence            45678999999999999998874  33211 111211                       1222333444555544432 


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEE
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFL  300 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dfl  300 (603)
                      ......+........    ..+++++++++++|.||.++|++.| ++||++|+.+++||+|++|+  .++|+.++++||+
T Consensus       110 ~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~--~~~d~~~~~~D~~  183 (361)
T d1m32a_         110 VARPDVQAIDAILNA----DPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGG--IPMDIAALHIDYL  183 (361)
T ss_dssp             TSCCCHHHHHHHHHH----CTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTT--SCCCTTTTTCSEE
T ss_pred             cCCccchhhHHHHHh----ccCccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCc--ccccccccccceE
Confidence            233333332222221    2479999999999999999999966 58999999999999999998  7999999999999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhh
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPM  380 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~  380 (603)
                      ++|+|||+++ |.|+|+||++++.+..+++...|+..........    ..     ..     ..   ...+|++...++
T Consensus       184 ~~s~~K~l~g-p~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~-----~~---~~~~t~~~~~~~  245 (361)
T d1m32a_         184 ISSANKCIQG-VPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRC----ME-----DN-----HG---KWRFTSPTHTVL  245 (361)
T ss_dssp             EEESSSTTCC-CSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHH----HH-----HT-----TT---CCSSCCCHHHHH
T ss_pred             EeeecccccC-CCCceEEEechhhhhhhccccccccccchhhhcc----cc-----cc-----cc---ccCCCCCchhhh
Confidence            9999999876 8999999999999888887776643211100000    00     00     11   346888888887


Q ss_pred             hhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          381 SIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       381 gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      ++.                                        .+++..... +.+.+..+...+.+.+.+.+..+.   
T Consensus       246 ~~~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---  282 (361)
T d1m32a_         246 AFA----------------------------------------QALKELAKEGGVAARHQRYQQNQRSLVAGMRALG---  282 (361)
T ss_dssp             HHH----------------------------------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHH----------------------------------------HHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcC---
Confidence            765                                        355544444 467777888888899998888752   


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                            ..+.++.. .+...+++|.++...  .+....+.+.+.++||.++.|..|                        
T Consensus       283 ------~~~~~~~~-~rs~~v~~~~~p~~~--~~~~~~~~~~l~~~gi~i~~G~~~------------------------  329 (361)
T d1m32a_         283 ------FNTLLDDE-LHSPIITAFYSPEDP--QYRFSEFYRRLKEQGFVIYPGKVS------------------------  329 (361)
T ss_dssp             ------CCBSSCGG-GBCSSEEEEECCCCT--TCCHHHHHHHHHHTTEECEECCCS------------------------
T ss_pred             ------CcccCChh-hcCCcEEEEECCCCC--CCCHHHHHHHHHHCCcEEECCCcC------------------------
Confidence                  22334432 234567788776432  245666767778899998877322                        


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                   ..+.+|||+..|+|.+||++|+++|++.|
T Consensus       330 -------------~~~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         330 -------------QSDCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             -------------SSCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             -------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence                         12589999765789999999999999876

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9e-29  Score=260.05  Aligned_cols=307  Identities=12%  Similarity=0.095  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHHcCC----CCCcEEEeccC-ch--------------------------HHHHHHHHHHcCCEEEEE
Q 007454          168 ESGLESAMKKRIMDFLNI----SENDYVYDYES-EA--------------------------VEAMIRTSEKRGARVMSA  216 (603)
Q Consensus       168 ~~~~~~~aR~~Ia~~lna----~~~e~vf~~es-~s--------------------------V~~~~~~a~~~Ga~V~~~  216 (603)
                      ..++++++++.+.++++.    ++++++|+-.. .+                          ...+...+++.|..+..+
T Consensus        34 f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~~~~~~  113 (382)
T d2bkwa1          34 FVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVV  113 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhccccccccccc
Confidence            345666777777777764    55667775221 11                          112234456678887777


Q ss_pred             eccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHH--hCCcEEEEeccccCCCCCCCCCCC
Q 007454          217 EFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQ--ENDWHILIDACALGPKDMDSFGLS  293 (603)
Q Consensus       217 ~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~--e~g~~vlvDAaq~~~~~m~~ldls  293 (603)
                      ...+....++.+++++.+..     .++++++++++++.||..+|++.+. .++  .+++++++||+|.+|+  .|+|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~--~pid~~  186 (382)
T d2bkwa1         114 RPLKIGESVPLELITEKLSQ-----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC--EEFEFD  186 (382)
T ss_dssp             CCSSTTSCCCHHHHHHHHHH-----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT--SCCCTT
T ss_pred             cccCCCCccchhHHHHHhhh-----ccchheeeeeccccccccccchhhhhhccccccceeeeeeccccccc--cccccc
Confidence            65433556778888888765     3689999999999999999999664 444  5579999999999999  899999


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCcee-ccccccccccccccCCCCCCcccCcccccccccC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVS-LLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAA  372 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~G  372 (603)
                      .+++||+++|+|||+++ |.|+|+||+|++.++.+++...+|... +...... +...      .+... ...+  ...+
T Consensus       187 ~~giD~~~~s~~K~l~g-P~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~-~~~~--~~~~  255 (382)
T d2bkwa1         187 EWGVDFALTASQKAIGA-PAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRR-WTPI------MENYE-AGKG--AYFA  255 (382)
T ss_dssp             TTTCSEEEEESSSTTCC-CSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHH-HHHH------HHHHH-TTCC--CCSS
T ss_pred             ccCeeEEeecccccCcC-CCchhhhhccHHHHhhhhhcccCCCcccchhhhhh-hhhh------hhccc-cccc--cccc
Confidence            99999999999999965 899999999999887776544333211 0000000 0000      00000 0111  3578


Q ss_pred             CCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 007454          373 TNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNAL  452 (603)
Q Consensus       373 T~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L  452 (603)
                      |+|+.+++++.                                        .||+.+.+.|++.+.+|.+.|++++++.|
T Consensus       256 Tp~~~~i~al~----------------------------------------~aL~~~~~~g~~~~~~~~~~l~~~l~~~l  295 (382)
T d2bkwa1         256 TPPVQLINSLD----------------------------------------VALKEILEEGLHKRWDLHREMSDWFKDSL  295 (382)
T ss_dssp             CCCHHHHHHHH----------------------------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHH----------------------------------------HHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Confidence            99999999987                                        69999988999999999999999999999


Q ss_pred             hcCCCCCCCCCceEEEeCCCCCC-CCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          453 MKLQHPNTEGNALVKIYGPKIRF-DRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       453 ~~L~h~~~~g~plv~Iygp~~~~-~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      .+..        .+.++.+.... ....+++|++++       +..+.++++++||.++.|..|.               
T Consensus       296 ~~~~--------~~~~~~~~~~~~~s~~v~~~~~~~-------~~~~~~~L~~~gi~i~~G~~~~---------------  345 (382)
T d2bkwa1         296 VNGL--------QLTSVSRYPSNMSAHGLTAVYVAD-------PPDVIAFLKSHGVVIAGGIHKD---------------  345 (382)
T ss_dssp             HTTT--------CCEESSCSSSTTBCSSCEEEECSC-------HHHHHHHHHHTTEECBCCCCTT---------------
T ss_pred             hhcc--------cccccccCchhccCCcEEEEcCCC-------HHHHHHHHHHCCeEEECCCChh---------------
Confidence            7642        13444432222 235677888764       3456777789999999885542               


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEe-cCCCCCHHHHHHHHHHHHHHHh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTAS-LGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~S-lg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                          .+.+++||| +|+.++.|||++++++|..+..
T Consensus       346 --------------------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~  377 (382)
T d2bkwa1         346 --------------------IGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL  377 (382)
T ss_dssp             --------------------TGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred             --------------------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH
Confidence                                123589999 9999999999999999876543

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.96  E-value=3.4e-28  Score=255.62  Aligned_cols=335  Identities=13%  Similarity=0.048  Sum_probs=233.5

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcE
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY  190 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~  190 (603)
                      +|-..|=+.++++|++++....                       .   +  ..+....++++++|+.++++||+++.++
T Consensus        19 ~l~~PGP~~~~~~V~~Am~~~~-----------------------~---~--hr~~ef~~i~~~~r~~L~~ll~~~~~~~   70 (388)
T d2ch1a1          19 IMMGPGPSNCSKRVLTAMTNTV-----------------------L---S--NFHAELFRTMDEVKDGLRYIFQTENRAT   70 (388)
T ss_dssp             BCCSSSSCCCCHHHHHHTTSCC-----------------------C---C--TTCHHHHHHHHHHHHHHHHHHTCCCSCE
T ss_pred             eeeeCCCCCCCHHHHHHhCcCC-----------------------C---C--CCCHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence            6667787888999999975421                       0   0  1244568999999999999999977665


Q ss_pred             EEeccC--------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          191 VYDYES--------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       191 vf~~es--------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      +|...+                          -+. .+...+++.|..+..+...| ...++..++++.+..     .++
T Consensus        71 i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~  143 (388)
T d2ch1a1          71 MCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPP-DRPFSLETLARAIEL-----HQP  143 (388)
T ss_dssp             EEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHH-----HCC
T ss_pred             EEEcCcHHHHHHHHHHHhccccccccccccccccc-cchhhhhhhccccccccccc-ccccchhhhhhhhcc-----CCc
Confidence            543211                          122 22344567788888888875 445666767666654     268


Q ss_pred             eEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          245 GLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +++++++++|.||.++|++.+ .+++++|+.++||++|.+|+  .++|++++++||+++|.||++++ |.|+|++++++.
T Consensus       144 ~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~--~pid~~~~~~d~~~~s~~K~~~g-p~G~g~~~~~~~  220 (388)
T d2ch1a1         144 KCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG--VPFYMDKWEIDAVYTGAQKVLGA-PPGITPISISPK  220 (388)
T ss_dssp             SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT--BCCCTTTTTCCEEECCCC-CCCC-CSSCEEEEECHH
T ss_pred             ceeeeeecccccccccchhhhcchhccccceeeeeeeecccc--cccchhccCceEEEEccccccCC-CCeEEEEeccHH
Confidence            999999999999999999965 58999999999999999999  79999999999999999999886 999999999988


Q ss_pred             CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454          324 TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA  403 (603)
Q Consensus       324 ~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~  403 (603)
                      .++.+.+...++. ........ +....  ....+     ..   ...+|+++.++.++.                    
T Consensus       221 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~-----~~---~~~~t~~~~~i~~~~--------------------  268 (388)
T d2ch1a1         221 ALDVIRNRRTKSK-VFYWDLLL-LGNYW--GCYDE-----PK---RYHHTVASNLIFALR--------------------  268 (388)
T ss_dssp             HHHHHHTCSSCCS-CGGGCHHH-HHHHT--TCSSS-----CC---CCCCCCCHHHHHHHH--------------------
T ss_pred             HHHhhhcccCccc-cccccchh-hhhhh--ccccc-----cc---ccCccchHHHHHHHH--------------------
Confidence            7654443222211 11000000 00000  00000     01   246777777776655                    


Q ss_pred             hhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE
Q 007454          404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF  483 (603)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF  483 (603)
                                          .+++.+...|......+.+.+..++...+..+..         .++.+....+...+++|
T Consensus       269 --------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~rs~~v~~~  319 (388)
T d2ch1a1         269 --------------------EALAQIAEEGLENQIKRRIECAQILYEGLGKMGL---------DIFVKDPRHRLPTVTGI  319 (388)
T ss_dssp             --------------------HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTC---------CBSSCSGGGBCTTEEEE
T ss_pred             --------------------HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccc---------ccccCCHHHhCCeEEEE
Confidence                                5777776678888888888888888877766431         11222221234568899


Q ss_pred             EEccCCCCccCHH-HHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe-c
Q 007454          484 NVFDWKREKIEPV-LVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS-L  561 (603)
Q Consensus       484 nv~~~~g~~v~~~-~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S-l  561 (603)
                      ++++.    ++.. ++..|.+++||.++.|.+|.                                    ..+++||| +
T Consensus       320 ~~p~g----~~~~~l~~~l~~~~gI~v~~G~~~~------------------------------------~~~~~RIs~~  359 (388)
T d2ch1a1         320 MIPKG----VDWWKVSQYAMNNFSLEVQGGLGPT------------------------------------FGKAWRVGIM  359 (388)
T ss_dssp             ECCTT----CCHHHHHHHHHHHHCBCCBCCCGGG------------------------------------TTTEEEEECC
T ss_pred             ECCCC----CCHHHHHHHHhhcCCEEEeCCCccc------------------------------------cCCEEEEcCC
Confidence            99641    3333 45667788899999986541                                    12589999 8


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Q 007454          562 GYLANFEDVYRLWAFVAQFLDAD  584 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~~~  584 (603)
                      |++||.|||++|+++|+++|.+.
T Consensus       360 g~~~t~edI~~ll~alke~L~~~  382 (388)
T d2ch1a1         360 GECSTVQKIQFYLYGFKESLKAT  382 (388)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999874

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.91  E-value=7.6e-25  Score=227.23  Aligned_cols=329  Identities=8%  Similarity=-0.084  Sum_probs=201.1

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      +||..++|-+++|++|++++.+.+-+.        .+.+      .+...-| |. +....++++++|+.|+++||++++
T Consensus         3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~--------~~~~------~~~~~~s-HR-s~~~~~~~~~~r~~l~~l~~~~~~   66 (360)
T d1w23a_           3 QVFNFNAGPSALPKPALERAQKELLNF--------NDTQ------MSVMELS-HR-SQSYEEVHEQAQNLLRELLQIPND   66 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSS--------TTSS------SCGGGSC-TT-SHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred             ceeEeCCCCcCCCHHHHHHHHHHHHhh--------cccC------ccccccC-cC-CHHHHHHHHHHHHHHHHHhCCCCC
Confidence            689899999999999999998743211        0100      0000111 11 334578999999999999999877


Q ss_pred             cEE-EeccC-------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCC
Q 007454          189 DYV-YDYES-------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKK  242 (603)
Q Consensus       189 e~v-f~~es-------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~  242 (603)
                      +.+ |...+                         +....+...+++.|..+......|. .....++++          .
T Consensus        67 ~~i~~~~gt~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~  135 (360)
T d1w23a_          67 YQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKAN-SYQSIPDFS----------E  135 (360)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGG-TSCSCCCGG----------G
T ss_pred             CEEEEeCCcHHHHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccc-cccchhhhh----------h
Confidence            544 43221                         1122233444555555555554331 111111111          1


Q ss_pred             CeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          243 QRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       243 ~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      ..+.+.+.+.+|+||+..|+..| .+||++|+.++|||+|++|+  .++|++++++||++++.||+++  | |.|+++.+
T Consensus       136 ~~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~--~~id~~~~~vd~~~~~~~k~~~--~-~~~~~~~~  210 (360)
T d1w23a_         136 FQLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILS--RPLKVNQFGMIYAGAQKNLGPS--G-VTVVIVKK  210 (360)
T ss_dssp             CCCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTS--SCCCGGGCSEEEEETTTTTSCT--T-CEEEEEEH
T ss_pred             cccccccceeEecCCccccceeeeeccccceeeEEeeccccccc--cccccccccceEEeeccccccC--C-cceeeEec
Confidence            23444577899999999999866 48999999999999999999  7999999999999999999766  3 67777776


Q ss_pred             CCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhh
Q 007454          322 KSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRA  401 (603)
Q Consensus       322 k~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~  401 (603)
                      +.......  ..++.....    ...          +      ..  ....|+......+...                 
T Consensus       211 ~~~~~~~~--~~~~~~~~~----~~~----------~------~~--~~~~~~~~~~~~~~~~-----------------  249 (360)
T d1w23a_         211 DLLNTKVE--QVPTMLQYA----THI----------K------SD--SLYNTPPTFSIYMLRN-----------------  249 (360)
T ss_dssp             HHHCSCCT--TCCGGGCHH----HHH----------H------TT--TCSSCCCHHHHHHHHH-----------------
T ss_pred             hhhhcccc--cCCcchhhh----hhh----------h------hh--hhcccccceeeechhH-----------------
Confidence            65432222  212110000    000          0      00  1234444444433321                 


Q ss_pred             hhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEE
Q 007454          402 EADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPAL  481 (603)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~iv  481 (603)
                                            ......+..+...+.++.+.....+...+.....        ..........+...++
T Consensus       250 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~rS~~vv  299 (360)
T d1w23a_         250 ----------------------VLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNG--------FYVGHAEKGSRSLMNV  299 (360)
T ss_dssp             ----------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTT--------SSEESSCGGGBCSSEE
T ss_pred             ----------------------HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccc--------ccccCCChhhcceeEE
Confidence                                  1222233334455555555555555555443221        1222222222345689


Q ss_pred             EEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEec
Q 007454          482 AFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASL  561 (603)
Q Consensus       482 sFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Sl  561 (603)
                      +|++++.    +..+.+..+++++||.++.|+.|.                                      |.||||+
T Consensus       300 sf~i~~~----~~~~~~~~~l~~~GI~~~~G~~~~--------------------------------------ggiRiS~  337 (360)
T d1w23a_         300 TFNLRNE----ELNQQFLAKAKEQGFVGLNGHRSV--------------------------------------GGCRASI  337 (360)
T ss_dssp             EEECSSH----HHHHHHHHHHHHTTEESCBCCTTT--------------------------------------CSEEEEC
T ss_pred             EEEcCCC----ccHHHHHHHHHHCCCeeeeCCCcc--------------------------------------CcEEEEe
Confidence            9999752    334566677889999999886541                                      3489999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 007454          562 GYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       562 g~~tt~eDVd~l~~~l~~~l~  582 (603)
                      ..++|.|||++|++++++|..
T Consensus       338 ~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         338 YNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHHHh
Confidence            888899999999999999964

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.4e-22  Score=217.18  Aligned_cols=334  Identities=11%  Similarity=-0.006  Sum_probs=233.0

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISEN  188 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~  188 (603)
                      +..|....+|.+++.+.+-+...+..                      |.-....| -.+.+++.++.+.+++++|++..
T Consensus        55 ~~n~asf~~t~~~~~~~~l~~~~~~~----------------------N~~~~~~~-P~~~~lE~~~v~~la~L~~~p~~  111 (450)
T d1pmma_          55 RQNLATFCQTWDDENVHKLMDLSINK----------------------NWIDKEEY-PQSAAIDLRCVNMVADLWHAPAP  111 (450)
T ss_dssp             GGBCSCCSCCCCCHHHHHHHHHTTTC----------------------BTTCTTTS-HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cccccccccCCCCHHHHHHHHHHHhc----------------------CCCCcccC-ccHHHHHHHHHHHHHHHhCCCcc
Confidence            45555556788888887777765321                      22111111 13568888999999999999653


Q ss_pred             cE-----EEecc----------------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHH
Q 007454          189 DY-----VYDYE----------------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEK  229 (603)
Q Consensus       189 e~-----vf~~e----------------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~  229 (603)
                      .-     +++..                                  .++...+.++|+-.|.+++.++++..+++++.++
T Consensus       112 ~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~  191 (450)
T d1pmma_         112 KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKR  191 (450)
T ss_dssp             TTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHH
T ss_pred             ccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHH
Confidence            21     22210                                  1123345566777899999999885579999999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-H------HHhCCcEEEEeccccCCCC-----CCCCCCCCCCC
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-I------AQENDWHILIDACALGPKD-----MDSFGLSLVRP  297 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~------a~e~g~~vlvDAaq~~~~~-----m~~ldls~~~~  297 (603)
                      |+++|..      +|.+|+.++.++.||.+-|++.|. +      ++++|+++|||||+.++.-     -..++....++
T Consensus       192 L~~~i~~------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~a  265 (450)
T d1pmma_         192 MIEACDE------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRV  265 (450)
T ss_dssp             HHHHCCT------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTE
T ss_pred             HHHHhhh------CceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccce
Confidence            9999874      799999999999999999997553 3      4678999999999877640     02344445689


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCC------CCCCCceeccccccccccccccCCCCCCcccCccccccccc
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVD------NTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVA  371 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p------~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~  371 (603)
                      |++++|+|||++. |.|+|+|++|+...  +..      .+.||...                          ..  -..
T Consensus       266 DSi~~s~HK~~~~-p~g~g~l~~r~~~~--~~~~~~~~~~yl~~~~~--------------------------~~--~~~  314 (450)
T d1pmma_         266 KSISASGHKFGLA-PLGCGWVIWRDEEA--LPQELVFNVDYLGGQIG--------------------------TF--AIN  314 (450)
T ss_dssp             EEEEEETTTTTCC-CSSCEEEEESSGGG--SCGGGCEEEEETTEEEE--------------------------EC--CSC
T ss_pred             eEeecChhhccCC-CCCeeEEEecChhh--hhhhcccccCcCCCCcC--------------------------CC--ccc
Confidence            9999999999876 99999999997643  221      12221100                          00  112


Q ss_pred             CCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 007454          372 ATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNA  451 (603)
Q Consensus       372 GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~  451 (603)
                      |+-+...++++-                                        ..+..+-..|+..+.++...|+++|.++
T Consensus       315 ~sr~~~~~~~~~----------------------------------------~~l~~~G~~G~~~~~~~~~~la~~l~~~  354 (450)
T d1pmma_         315 FSRPAGQVIAQY----------------------------------------YEFLRLGREGYTKVQNASYQVAAYLADE  354 (450)
T ss_dssp             CSCBSHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHH----------------------------------------HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333333343322                                        3555555568999999999999999999


Q ss_pred             HhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHH
Q 007454          452 LMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVL  531 (603)
Q Consensus       452 L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l  531 (603)
                      |.++.        .++|++|..+..+.++|+|.+.+.....++...|.+.+.++|..|.+-.+  +.             
T Consensus       355 L~~~~--------~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~--p~-------------  411 (450)
T d1pmma_         355 IAKLG--------PYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GG-------------  411 (450)
T ss_dssp             HHTTS--------CEEEEEECCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC--CT-------------
T ss_pred             HHhCC--------CeEEEeCCCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc--CC-------------
Confidence            99863        27788765545678999999998776667777787777788877653211  00             


Q ss_pred             HhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          532 EKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                        ......++|+++...+|.|+|++|++.|++.++.
T Consensus       412 ------------------~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~~  445 (450)
T d1pmma_         412 ------------------EATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY  445 (450)
T ss_dssp             ------------------TCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence                              0122358999999999999999999999987654

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-23  Score=216.83  Aligned_cols=328  Identities=10%  Similarity=-0.048  Sum_probs=210.6

Q ss_pred             eeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCcccc---ccchHHHHHHHHHHHHHHHcCCC
Q 007454          110 TCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLL---HGGQESGLESAMKKRIMDFLNIS  186 (603)
Q Consensus       110 vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~---~g~~~~~~~~~aR~~Ia~~lna~  186 (603)
                      ||-=+.|-+.+|++|++++.+.+..        |          . .+..+.+.   -+....++++++|+.|+++||++
T Consensus         2 ~~nF~pGP~~~p~~Vl~a~~~~~~~--------~----------~-~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~   62 (360)
T d1bjna_           2 IFNFSSGPAMLPAEVLKQAQQELRD--------W----------N-GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP   62 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSS--------G----------G-GSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC
T ss_pred             eEEeCCCCcCCCHHHHHHHHHHHhh--------h----------c-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4444567778899999999875431        1          1 12222111   13345789999999999999997


Q ss_pred             CC-cEEEeccC-------------------------chHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCC
Q 007454          187 EN-DYVYDYES-------------------------EAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKK  240 (603)
Q Consensus       187 ~~-e~vf~~es-------------------------~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~  240 (603)
                      ++ +++|...+                         ....++...+++.|..+......| ....+..++++.+      
T Consensus        63 ~~~~v~~~~gs~t~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------  135 (360)
T d1bjna_          63 SNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVT-VDGLRAVKPMREW------  135 (360)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEE-ETTEEEECCGGGC------
T ss_pred             CCCEEEEECCchHHHHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeecccc-CCCcchhhhhhhh------
Confidence            65 45554221                         123444556667777766665543 3333333333333      


Q ss_pred             CCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEE
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFV  320 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~v  320 (603)
                      ..+++++++.+.+|.||...|+..+ .++.+++.|++||+|.+++  .++|.  .++|++++|+||++|. |.|.|++++
T Consensus       136 ~~~~~~v~v~~~~~~t~~~~~~~~i-~~~~~~~~v~vDa~~~~~~--~~vd~--~~~dv~~~ss~k~~~~-~~~~~~~~~  209 (360)
T d1bjna_         136 QLSDNAAYMHYCPNETIDGIAIDET-PDFGADVVVAADFSSTILS--RPIDV--SRYGVIYAGAQKNIGP-AGLTIVIVR  209 (360)
T ss_dssp             CCCSSCSCEEECSEETTTTEECCCC-CCCCTTCCEEEECTTTTTS--SCCCG--GGCSEEEEETTTTTSS-TTCEEEEEE
T ss_pred             ccCCceeEEEecccccccCccccce-ecccccceeeeeeeccccc--eeeee--ccceeEEEEccccccc-CCCceeEee
Confidence            3478999999999999999998643 3577899999999999997  46665  5689999999999886 778888888


Q ss_pred             eCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhh
Q 007454          321 KKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRR  400 (603)
Q Consensus       321 kk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~  400 (603)
                      .+............+.         .+...+             ..  ....+.....+..+..                
T Consensus       210 ~~~~~~~~~~~~~~~~---------~~~~~~-------------~~--~~~~~~~~~~~~~~~~----------------  249 (360)
T d1bjna_         210 EDLLGKANIACPSILD---------YSILND-------------NG--SMFNTPPTFAWYLSGL----------------  249 (360)
T ss_dssp             GGGCSCCCTTSCGGGC---------HHHHHH-------------TT--TCSSCCCHHHHHHHHH----------------
T ss_pred             ehhhhhccccCCcchh---------hHHHHh-------------hh--hhccccccchHHHHHH----------------
Confidence            7766532222111110         010000             00  1123333333333221                


Q ss_pred             hhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCE
Q 007454          401 AEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPA  480 (603)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~i  480 (603)
                                             .++......+++...++.+.+..++...+..+.         ..++.+....++..+
T Consensus       250 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~rs~~v  297 (360)
T d1bjna_         250 -----------------------VFKWLKANGGVAEMDKINQQKAELLYGVIDNSD---------FYRNDVAKRNRSRMN  297 (360)
T ss_dssp             -----------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS---------SEECCBCGGGBCSSE
T ss_pred             -----------------------HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccc---------cccccCCcccccceE
Confidence                                   344444444566666666666666666665542         234444333456789


Q ss_pred             EEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEe
Q 007454          481 LAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTAS  560 (603)
Q Consensus       481 vsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~S  560 (603)
                      ++|++++.    +.++.+..+++++||.++.|+.|                                      .|.||||
T Consensus       298 ~~f~~~~~----~~~~~~~~~l~~~Gi~~~~G~~~--------------------------------------~g~~Ris  335 (360)
T d1bjna_         298 VPFQLADS----ALDKLFLEESFAAGLHALKGHRV--------------------------------------VGGMRAS  335 (360)
T ss_dssp             EEEEESSG----GGHHHHHHHHHHTTEECCBCCTT--------------------------------------TCSEEEE
T ss_pred             EEEEcCCc----ccHHHHHHHHHHCCCEeecCCCc--------------------------------------cCeEEEE
Confidence            99999752    45677888889999999887322                                      1359999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhh
Q 007454          561 LGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       561 lg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++.++|.|||++|+++|++|.++
T Consensus       336 ~~~~~t~edV~~li~~l~e~~~~  358 (360)
T d1bjna_         336 IYNAMPLEGVKALTDFMVEFERR  358 (360)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998654

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.87  E-value=6.6e-22  Score=205.81  Aligned_cols=326  Identities=10%  Similarity=0.050  Sum_probs=203.5

Q ss_pred             ceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccc---cchHHHHHHHHHHHHHHHcCC
Q 007454          109 HTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLH---GGQESGLESAMKKRIMDFLNI  185 (603)
Q Consensus       109 ~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~---g~~~~~~~~~aR~~Ia~~lna  185 (603)
                      +.|.=..|-+++|++|+++|.+.+.+.        .           .+..+.+..   +....++++++|+.|+++||+
T Consensus         3 ~~~~F~pGP~~vp~~V~eam~~~~~~~--------~-----------~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~   63 (361)
T d2c0ra1           3 RAYNFNAGPAALPLEVLERAQAEFVDY--------Q-----------HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGN   63 (361)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSS--------T-----------TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCcccCCCCcCCCHHHHHHHHHHHhhh--------c-----------ccCccccccCcCCHHHHHHHHHHHHHHHHHhCC
Confidence            456325777789999999998754321        0           112222111   234678999999999999999


Q ss_pred             CCC-cEEEecc-------------------------CchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          186 SEN-DYVYDYE-------------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       186 ~~~-e~vf~~e-------------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +++ +++|...                         ......+...+++.|.++..++.+| ...++.+++++.+..   
T Consensus        64 ~~~~~i~~~~gs~t~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~---  139 (361)
T d2c0ra1          64 PTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEA-SNYMTLPKLQEIQLQ---  139 (361)
T ss_dssp             CSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGG-GTTCSCCCGGGCCCC---
T ss_pred             CCCCEEEEECCCchHHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccc-ccccchhhhhhhccc---
Confidence            765 5555321                         1123345677788899999998886 455565555554432   


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                         .+    +.+++|+||...|+..+ .+++++|+.|+|||+|++|+  .++|+.++++|  ++|++|.+|. | |.+++
T Consensus       140 ---~~----~~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~--~~id~~~~di~--~~s~~k~~~~-~-~~~~~  206 (361)
T d2c0ra1         140 ---DN----AAYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILS--RPFDLNQFGLV--YAGAQKNLGP-S-GVTVV  206 (361)
T ss_dssp             ---TT----EEEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTS--SCCCGGGCSEE--EEETTTTTCC-S-SCEEE
T ss_pred             ---Cc----ceEEEEecccceecceEEEeeccCCceEEEEeeccccc--cccccccceeE--EEeccccccc-c-cCcEE
Confidence               11    45678999999999855 47899999999999999999  79999986555  4678998883 3 44555


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      ++.........+....+.        .++...+      .      .   ....+++...+..+.               
T Consensus       207 ~~~~~~~~~~~~~~~~~~--------~~~~~~~------~------~---~~~~~~~~~~~~~~~---------------  248 (361)
T d2c0ra1         207 IVREDLVAESPKHLPTML--------RYDTYVK------N------N---SLYNTPPSFGIYMVN---------------  248 (361)
T ss_dssp             EEEGGGSSSCCTTSCGGG--------CHHHHHH------T------T---TCSSCCCHHHHHHHH---------------
T ss_pred             EEEhHHhhhCcccccccc--------ccccccc------c------c---cccccccceeeehhh---------------
Confidence            554443332322211110        0000000      0      0   122333444333322               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDR  477 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~r  477 (603)
                                               .++...... +...+..+.+.....+........       .+..++.++. .+.
T Consensus       249 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~rS  295 (361)
T d2c0ra1         249 -------------------------EVLKWIEERGGLEGVQQANRKKASLIYDAIDQSG-------GFYRGCVDVD-SRS  295 (361)
T ss_dssp             -------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST-------TSSEESSCGG-GBC
T ss_pred             -------------------------hHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcc-------cccccCCChh-hcc
Confidence                                     122222223 345555555555555555555432       1233444432 233


Q ss_pred             CCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEE
Q 007454          478 GPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVV  557 (603)
Q Consensus       478 g~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~V  557 (603)
                      ..+++|++++.    ++++.+.++++++||.++.|+.|                                    .  |.+
T Consensus       296 ~~~~~~~~~~~----~~~~~~~~~L~~~GI~~~~G~~~------------------------------------~--g~~  333 (361)
T d2c0ra1         296 DMNITFRLASE----ELEKEFVKASEQEGFVGLKGHRS------------------------------------V--GGL  333 (361)
T ss_dssp             SSEEEEECSCH----HHHHHHHHHHHHTTEESCBCCTT------------------------------------T--CSE
T ss_pred             ceEEEEECCCc----ccHHHHHHHHHHCCCEEecCCCc------------------------------------C--CeE
Confidence            56799999752    45677888889999999988332                                    1  249


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          558 TASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       558 R~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |||+..++|.|||++|+++|++|...
T Consensus       334 RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         334 RASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998654

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.3e-20  Score=194.96  Aligned_cols=318  Identities=12%  Similarity=0.013  Sum_probs=212.4

Q ss_pred             eeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcCCCCCcE
Q 007454          111 CLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLNISENDY  190 (603)
Q Consensus       111 YLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~lna~~~e~  190 (603)
                      ||=..|=+++++.|++++.+...                       |.     .+....++++++|+.+.++||++.+.+
T Consensus         2 ~L~~PGP~~v~~~V~~am~~~~~-----------------------~h-----r~~~f~~i~~~~~~~l~~ll~~~~~~i   53 (348)
T d1iuga_           2 WLLTPGPVRLHPKALEALARPQL-----------------------HH-----RTEAAREVFLKARGLLREAFRTEGEVL   53 (348)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCC-----------------------CT-----TSHHHHHHHHHHHHHHHHHHTCSSEEE
T ss_pred             cccCCCCCCCCHHHHHHhcCCCC-----------------------CC-----CCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence            45556667889999999865211                       10     123457899999999999999876555


Q ss_pred             EEeccC-ch-----------------------HHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeE
Q 007454          191 VYDYES-EA-----------------------VEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGL  246 (603)
Q Consensus       191 vf~~es-~s-----------------------V~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~L  246 (603)
                      +|.-.. .+                       -..+...+++.|.++.....+|.. .++.++         ....++.+
T Consensus        54 ~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~-~~~~~~---------~~~~~~~~  123 (348)
T d1iuga_          54 ILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGD-TPRPED---------VAKEGYAG  123 (348)
T ss_dssp             EEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTC-CCCTTT---------SCCSSCSE
T ss_pred             EEeCchHHHHHHHHHhcccccccceeecchHHHHHHHHHHHhcCcccccccccCCC-cccccc---------ccccCCCe
Confidence            443110 00                       112345677788888888877632 222211         11347889


Q ss_pred             EEEeCccccccccccHHHHH-HHHhC--CcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          247 FVFPLHSRMTGARYPYLWMR-IAQEN--DWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       247 v~~~~~Sn~TG~~~pl~~i~-~a~e~--g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      |+++|..+.||.++|++.+. .++++  +..+++||+|..|.  .++|++.+++|++++|.||++++ |.|+|+++++++
T Consensus       124 v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~--~~i~~d~~~iD~~~~~sqK~l~g-ppG~~~v~~s~~  200 (348)
T d1iuga_         124 LLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLV--GEVALEAMGVDAAASGSQKGLMC-PPGLGFVALSPR  200 (348)
T ss_dssp             EEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT--BCCCSGGGTCSEEEEESSSTTCC-CSCEEEEEECHH
T ss_pred             eEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhcccc--cccccccccCCEEEeccccceec-CCceeeeeechH
Confidence            99999999999999999775 67665  58899999999998  79999999999999999998855 889999999999


Q ss_pred             CCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhh
Q 007454          324 TVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEA  403 (603)
Q Consensus       324 ~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~  403 (603)
                      .++.++|..+.  .++    ..++...       +      ..  ...+|+++..++++.                    
T Consensus       201 ~le~~~~~~~~--~dl----~~~~~~~-------~------~~--~~~~Tp~v~~i~~l~--------------------  239 (348)
T d1iuga_         201 ALERLKPRGYY--LDL----ARELKAQ-------K------EG--ESAWTPAINLVLAVA--------------------  239 (348)
T ss_dssp             HHHTCCCCSST--TCH----HHHHHHH-------T------TT--CCSSCCCHHHHHHHH--------------------
T ss_pred             HHhhhcccccc--cch----hhhhhhh-------c------cC--cccccccchHHHHHH--------------------
Confidence            88777763211  000    0000000       0      01  246799999999987                    


Q ss_pred             hhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEE
Q 007454          404 DSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAF  483 (603)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsF  483 (603)
                                          .+|+.+.+.|.+....+ +....++...+..+      |   ++++ |+  .....+++|
T Consensus       240 --------------------~aL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------g---l~~~-~~--~~s~~v~~~  286 (348)
T d1iuga_         240 --------------------AVLEEVLPRLEEHLALK-AWQNALLYGVGEEG------G---LRPV-PK--RFSPAVAAF  286 (348)
T ss_dssp             --------------------HHHHHHGGGHHHHHHHH-HHHHHHHHHHHHHT------T---CEES-CS--SBCTTCEEE
T ss_pred             --------------------HHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhh------h---hccC-hh--hcCCeEEEE
Confidence                                57776655443333222 22233343333332      2   3443 32  234568899


Q ss_pred             EEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCC
Q 007454          484 NVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGY  563 (603)
Q Consensus       484 nv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~  563 (603)
                      ++++-    ++...+.+.++++||.++.|..+                                    .....+||+.==
T Consensus       287 ~~P~g----~~~~~~~~~l~~~gi~i~~G~~~------------------------------------l~~~~~RIg~mG  326 (348)
T d1iuga_         287 YLPEG----VPYARVKEAFAQRGAVIAGGQGP------------------------------------LKGKVFRLSLMG  326 (348)
T ss_dssp             ECCTT----CCHHHHHHHHHTTTEECEECCGG------------------------------------GTTTEEEECCCS
T ss_pred             ECCCC----CCHHHHHHHHHHCCeEEEcCccc------------------------------------cCCCEEEEeCCC
Confidence            99752    45566767777899999887221                                    112489998544


Q ss_pred             CCCHHHHHHHHHHHHHHHhh
Q 007454          564 LANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       564 ~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ++|.+||++++++|++.|++
T Consensus       327 ~~~~~d~~~~~~~l~~~l~~  346 (348)
T d1iuga_         327 AYDRYEALGVAGMFREVLEE  346 (348)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
Confidence            79999999999999998865

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.84  E-value=9.9e-19  Score=180.46  Aligned_cols=150  Identities=13%  Similarity=0.167  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEe-------------------------ccCchHHHHHHHHHHcCCEEEEEecc-CCccc
Q 007454          171 LESAMKKRIMDFLNISENDYVYD-------------------------YESEAVEAMIRTSEKRGARVMSAEFS-WPRLR  224 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~~~e~vf~-------------------------~es~sV~~~~~~a~~~Ga~V~~~~~~-~~~g~  224 (603)
                      +.+..++++|+|+|++  +++++                         .+|.+   ....++..|++|..+|.+ ..++.
T Consensus        48 l~~~~~~~~A~~~g~e--~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s---~~~~~~~~g~~v~~v~~~~~~~~~  122 (364)
T d2e7ja1          48 IHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYS---SYVAAERAGLNIALVPKTDYPDYA  122 (364)
T ss_dssp             HHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHH---HHHHHHHTTCEEEEECCCCTTTCC
T ss_pred             HHHHHHHHHHHHhCcC--EEEEECcHHHHHHHHHHHHhCCCcEEEeecccccc---cchHHHhccceEEEeeeccccccc
Confidence            5677899999999973  45432                         12333   234466789999999875 34678


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICS  303 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S  303 (603)
                      ++.++|+++|..+++ +.++.||++.+.+|+||.+.|++.| ++|+++|+++++|+++.+|+  .++++..+++|++++|
T Consensus       123 i~~~~l~~~i~~~~k-~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~--~~~~~~~~g~D~~~~S  199 (364)
T d2e7ja1         123 ITPENFAQTIEETKK-RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR--MPVSLKEIGADFIVGS  199 (364)
T ss_dssp             CCHHHHHHHHHHHTT-TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT--BCCCHHHHTCSEEEEE
T ss_pred             cCHHHHHhhhhhhcc-cCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhh--hhhcccccccceeeec
Confidence            999999999986432 3468999999999999999999955 68999999999999999998  6899999999999999


Q ss_pred             ccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          304 FYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       304 ~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      +||+||. |.|.|+|+++++..+.+.
T Consensus       200 ~~K~~~~-~g~~g~l~~~~~~~~~~~  224 (364)
T d2e7ja1         200 GHKSMAA-SGPIGVMGMKEEWAEIVL  224 (364)
T ss_dssp             HHHHSSC-CSSCEEEEECTTTTTTTT
T ss_pred             cccccCC-CCCEEEEEECHHHHHHHH
Confidence            9999995 667999999998765443

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.77  E-value=2e-17  Score=179.40  Aligned_cols=271  Identities=12%  Similarity=0.045  Sum_probs=172.0

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEecc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDAC  280 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAa  280 (603)
                      +.+.+.-.|..+..++.+ +++++|.++|++.|.+.+.....+-+|+.++.++.||.+-|++.|+ +|+++|+++|||||
T Consensus       195 i~ka~~~lGl~~~~v~~d-~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA  273 (476)
T d1js3a_         195 VERAGLIGGVKLKAIPSD-GKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAA  273 (476)
T ss_dssp             HHHHHHHHTCEEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECT
T ss_pred             HHHHHHhcCceEEEeccC-CCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecc
Confidence            344455568889999988 6899999999999986444444678899999999999999999775 89999999999998


Q ss_pred             ccCCCCCCCCC-CC-----CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCC
Q 007454          281 ALGPKDMDSFG-LS-----LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSS  354 (603)
Q Consensus       281 q~~~~~m~~ld-ls-----~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~  354 (603)
                      ..+..  ...+ ..     ..++|.+++++|||++. |.|.|++++|+...  +......+.... .....    ..+..
T Consensus       274 ~Gg~~--~~~~~~~~~~~gi~~aDSit~d~HK~l~~-P~~~g~~l~r~~~~--~~~~~~~~~~~~-~~~~~----~~~~~  343 (476)
T d1js3a_         274 YAGSA--FICPEFRHLLNGVEFADSFNFNPHKWLLV-NFDCSAMWVKRRTD--LTGAFKLDPVYL-KHSHQ----GSGLI  343 (476)
T ss_dssp             TGGGG--GGSTTTGGGGTTGGGCSEEEECHHHHSSC-CSSCEEEEESCHHH--HHGGGC-----------------CCSC
T ss_pred             cchhh--hhhcchhhhhcCCcccceeeecCcccccc-CCcceeecccchHH--HHHHHhcChhhh-ccccc----ccccc
Confidence            65543  1111 11     12689999999999886 99999999997432  111111000000 00000    00000


Q ss_pred             CCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCH
Q 007454          355 CETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGL  434 (603)
Q Consensus       355 ~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl  434 (603)
                      .++.     ...  + .++-.+.++ .+                                        -.++..+-..|+
T Consensus       344 ~~~~-----~~~--~-~~sr~~~al-~l----------------------------------------w~~l~~~G~~g~  374 (476)
T d1js3a_         344 TDYR-----HWQ--L-PLGRRFRSL-KM----------------------------------------WFVFRMYGVKGL  374 (476)
T ss_dssp             CCGG-----GSS--S-CSCCCCTHH-HH----------------------------------------HHHHHHHHHHHH
T ss_pred             cccc-----ccc--c-ccchhhHHH-HH----------------------------------------HHHHHHHhHhHH
Confidence            0000     000  1 111122211 11                                        145555555688


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcc
Q 007454          435 TMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSL  514 (603)
Q Consensus       435 ~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~  514 (603)
                      ..+.++...|+++|.+.|.+.        |.++++.|.    ..++|+|++.+.+.  ++..+.+++.++-.+.      
T Consensus       375 ~~~i~~~~~lA~~l~~~l~~~--------~~fel~~~p----~l~iV~Fr~~~~d~--~n~~l~~~l~~~G~~~------  434 (476)
T d1js3a_         375 QAYIRKHVQLSHEFEAFVLQD--------PRFEVCAEV----TLGLVCFRLKGSDG--LNEALLERINSARKIH------  434 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--------TTEEECSCC----CSSEEEEEESSCHH--HHHHHHHHHHHHTSCB------
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--------CCeEEECCC----ceEEEEEEccCChH--HHHHHHHHHHhcCCEE------
Confidence            888889999999999999875        238888764    56899999976432  2233344443221121      


Q ss_pred             cCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhh
Q 007454          515 HHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLG-YLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       515 C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg-~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      |.+..                       .        .+..++|++++ +.||.+||+.+|+.|++...+
T Consensus       435 ~s~t~-----------------------~--------~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~  473 (476)
T d1js3a_         435 LVPCR-----------------------L--------RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAE  473 (476)
T ss_dssp             CEEEE-----------------------E--------TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             Eeeee-----------------------E--------CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            11100                       0        11248999988 889999999999999988654

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.69  E-value=2.1e-17  Score=177.55  Aligned_cols=255  Identities=9%  Similarity=-0.074  Sum_probs=148.4

Q ss_pred             CCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCC-----C--------CCCCcEEEEcccc
Q 007454          241 KKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGL-----S--------LVRPDFLICSFYQ  306 (603)
Q Consensus       241 ~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldl-----s--------~~~~Dflv~S~hK  306 (603)
                      ..++.++++.+.+|..|.++|++.| ++|+++|++|++|+|+.++..  ..+.     .        ..++|++++|+||
T Consensus       171 ~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~--~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK  248 (462)
T d1c4ka2         171 WKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQ--FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHK  248 (462)
T ss_dssp             CSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGG--SSGGGGGGCTTSCCCCCTTSCEEEEEECHHH
T ss_pred             ccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccc--ccCcCCcchhhccccccccCCccEEEEecCc
Confidence            3467889999999999999999965 589999999999999887652  2211     1        2346999999999


Q ss_pred             cCCCCCCceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhh
Q 007454          307 IFGENPSGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMR  385 (603)
Q Consensus       307 ~fG~~P~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~  385 (603)
                      ++|. |+|.++|.++....... ..+.. +.+.      .                 ....  ++.+++++..+.++.  
T Consensus       249 ~lg~-~~~g~ll~~~~~~~~~~-~~~~~~~~~~------~-----------------~~~~--~~t~sp~~~~~asl~--  299 (462)
T d1c4ka2         249 QQAG-FSQTSQIHKKDSHIKGQ-LRYCDHKHFN------N-----------------SFNL--FMSTSPFYPMYAALD--  299 (462)
T ss_dssp             HSSC-CTTCEEEEEECGGGTTS-TTCCCHHHHH------H-----------------HHHH--HSCSSCCHHHHHHHH--
T ss_pred             cccc-ccceEEEEecccccccc-chhhhHHHHH------H-----------------hhhh--cccCCchHHHHHHHH--
Confidence            9994 66655555555443211 11111 1110      0                 0011  467888888877765  


Q ss_pred             hcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCc
Q 007454          386 QSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTE-GNA  464 (603)
Q Consensus       386 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~-g~p  464 (603)
                                                            .|..++...+..++.++...+.++++++|.++...-.. ..+
T Consensus       300 --------------------------------------~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~  341 (462)
T d1c4ka2         300 --------------------------------------VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPP  341 (462)
T ss_dssp             --------------------------------------HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCS
T ss_pred             --------------------------------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence                                                  45555544445666677788889999999886421000 000


Q ss_pred             eEEEeCCCC--------------CCCCCCEEEEEEccCCCCcc--CHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhH
Q 007454          465 LVKIYGPKI--------------RFDRGPALAFNVFDWKREKI--EPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKD  528 (603)
Q Consensus       465 lv~Iygp~~--------------~~~rg~ivsFnv~~~~g~~v--~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~  528 (603)
                      .  +.+...              ....+.+..+.+.++..+.+  +|  ..-.....||.++.|.+|..+....   ...
T Consensus       342 ~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp--~k~~l~~~gi~~~~g~~~~~G~~~~---~~~  414 (462)
T d1c4ka2         342 V--VNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDP--NKFMLTTPGINPETGDYEDFGVPAT---IVA  414 (462)
T ss_dssp             E--ETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECT--TEEEEECSSEETTTTEECSSCCCHH---HHH
T ss_pred             c--cccccccccchHhhhcccchhccCCcchhccccccCccceeccc--ceeEEecCCccccccchhhcCCcHH---HHH
Confidence            0  111000              00011111111112111110  00  0001234577777888887665321   123


Q ss_pred             HHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          529 NVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       529 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                      +.|...+...           .....+.||++++.++|.||||+|+++|+++..
T Consensus       415 ~~L~~~gI~~-----------e~~~~~~i~~~~s~~~T~edid~li~aL~ei~r  457 (462)
T d1c4ka2         415 NYLRDHGIIP-----------EKSDLNSILFLMTPAETPAKMNNLITQLLQLQR  457 (462)
T ss_dssp             HHHHHTTCCC-----------SEECSSEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCee-----------eccCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            4454433211           112346899999999999999999999998753

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.2e-16  Score=168.25  Aligned_cols=310  Identities=9%  Similarity=0.022  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcE-EEeccC--------------------------chHHHHHHHHHHcCCEEEEEec--c
Q 007454          169 SGLESAMKKRIMDFLNISENDY-VYDYES--------------------------EAVEAMIRTSEKRGARVMSAEF--S  219 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~-vf~~es--------------------------~sV~~~~~~a~~~Ga~V~~~~~--~  219 (603)
                      ..++.+.-+.+++++|.++..- +++...                          .++..+...++-.|++...++.  +
T Consensus        93 ~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~  172 (445)
T d3bc8a1          93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE  172 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred             HHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeecc
Confidence            4566667788888999876433 332111                          1122233444556787777653  2


Q ss_pred             CCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCC----CCCCCCCC
Q 007454          220 WPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKD----MDSFGLSL  294 (603)
Q Consensus       220 ~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~----m~~ldls~  294 (603)
                      -.++.+|.++|+++|....  .+++.+|++++.++.+|.+.|++.| .+|+++|++|++|+|+.++..    ..+.+...
T Consensus       173 ~~~~~id~~~l~~~i~~~~--~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  250 (445)
T d3bc8a1         173 GDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV  250 (445)
T ss_dssp             TTEEECCHHHHHHHHHHHC--GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHhcc--ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc
Confidence            2578999999999997521  2368999999999999999999866 589999999999999765420    01233344


Q ss_pred             CCCcEEEEcccccCCCCCCceEEEEEeCCCC-cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          295 VRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       295 ~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~-~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      .++|++++|+||+|+. |.|.|++++|+... +.+...+.+                                  ...++
T Consensus       251 ~~vd~~~~s~hK~~~~-p~g~~~l~~~~~~~~~~~~~~~~~----------------------------------~~~~~  295 (445)
T d3bc8a1         251 GRIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPG----------------------------------RASAS  295 (445)
T ss_dssp             SCCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCS----------------------------------CBCSH
T ss_pred             CCcceEEecCcccccc-CCCCceeeeCChHHHHHHHHHHhh----------------------------------cccCc
Confidence            5699999999998776 99999999986432 111110000                                  01111


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      +++...                                            .++..+...|+..+.++...+.+++.+.|.
T Consensus       296 ~~~~~~--------------------------------------------~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~  331 (445)
T d3bc8a1         296 PSLDVL--------------------------------------------ITLLSLGCSGYRKLLKERKEMFVYLSTQLK  331 (445)
T ss_dssp             HHHHHH--------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHH--------------------------------------------HHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Confidence            111111                                            233333334566666677778888888887


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCc-cCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHH
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREK-IEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLE  532 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~-v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~  532 (603)
                      ++....  |   .++...   ........+++....+.. ..+..+...+...||..+.++.|-..  ....   ...+.
T Consensus       332 ~l~~~~--~---~~~l~~---~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~--~~i~---~~~~~  398 (445)
T d3bc8a1         332 KLAEAH--N---ERLLQT---PHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV--QTVS---GHTFR  398 (445)
T ss_dssp             HHHHHT--T---CCBCCC---TTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE--EEET---TEEEE
T ss_pred             HHHhhc--C---ceeecC---CCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccc--cchh---hhhhh
Confidence            652100  1   111111   123445556665543322 23333444455678754433333221  1100   00000


Q ss_pred             hhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          533 KTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                      ...          .. ........||++++.++|.||||+|++.|.+++++
T Consensus       399 ~~g----------~~-~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~  438 (445)
T d3bc8a1         399 GFM----------SH-ADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNI  438 (445)
T ss_dssp             TTT----------TT-SSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcC----------CC-CccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHH
Confidence            000          00 01233457999999999999999999999999876

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.64  E-value=1.3e-15  Score=162.02  Aligned_cols=258  Identities=12%  Similarity=0.034  Sum_probs=162.3

Q ss_pred             HHHHHHcCCEEEEEec--cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEec
Q 007454          203 IRTSEKRGARVMSAEF--SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDA  279 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~--~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDA  279 (603)
                      .+.+.-.|++...++.  +-.++.+|.++|+++|...+. .+++.+|+++..++.+|.+.|++.| .+|+++|+++++|+
T Consensus       170 ~k~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~  248 (434)
T d2z67a1         170 IKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIE-LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIING  248 (434)
T ss_dssp             HHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHHH-TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred             HHHHHHhCCcceEEEeecCCCccCCCHHHHHHHHHhhhh-cCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEec
Confidence            3444556788777753  224578999999999975221 2367889999999999999999966 58999999999999


Q ss_pred             cccCCCCC---CCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC-cCcCCCCCCCceeccccccccccccccCCC
Q 007454          280 CALGPKDM---DSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV-PILVDNTSSGMVSLLPAKKQLWLTDEFSSC  355 (603)
Q Consensus       280 aq~~~~~m---~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~-~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~  355 (603)
                      |+.++-..   .+.....+++|++++|+||+||. |.|.|++++++... +.+.+.+                       
T Consensus       249 a~g~~~~~~~~~~~~~~~~~~D~~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~-----------------------  304 (434)
T d2z67a1         249 AYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSY-----------------------  304 (434)
T ss_dssp             TTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTS-----------------------
T ss_pred             cchhhhhhccccccccccCCcceEEEcCcccccc-CCCccccccCcHHHHHHHHhhc-----------------------
Confidence            87543200   01122356899999999998776 89999999886432 1111111                       


Q ss_pred             CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHH
Q 007454          356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLT  435 (603)
Q Consensus       356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~  435 (603)
                                     .++.+...+..+.                                        .++..+...|+.
T Consensus       305 ---------------~~~~~~~~~~~~~----------------------------------------a~l~~~~~~g~~  329 (434)
T d2z67a1         305 ---------------PGRASATPVVNTL----------------------------------------VSLLSMGSKNYL  329 (434)
T ss_dssp             ---------------CSCBCSHHHHHHH----------------------------------------HHHHHHHHHHHH
T ss_pred             ---------------ccccccchHHHHH----------------------------------------HHHHHHHHhcch
Confidence                           1111111122111                                        344444455778


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCccc
Q 007454          436 MISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLH  515 (603)
Q Consensus       436 ~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C  515 (603)
                      .+.++...+.+|+.++|+++....  |   .+++.+.    ....+.+.+ +     .++..+...+...||.   |..|
T Consensus       330 ~~~~~~~~~a~~l~~~L~~l~~~~--g---~~ll~~~----~~~~~~~~~-~-----~~~~~l~~~L~~~gI~---g~~v  391 (434)
T d2z67a1         330 ELVKNQKNSKKLLDELLNDLSKKT--G---GKFLDVE----SPIASCISV-N-----SDPVEIAAKLYNLRVT---GPRG  391 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS--S---CCBCCCC----CSSEEEEEC-S-----SCHHHHHHHHHHTTEE---SCEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhc--C---ceecCCC----CCceeeeec-C-----CCHHHHHHHHHHcCCe---eeeh
Confidence            888888999999999998763111  1   2222221    122333332 3     2345555556678985   4444


Q ss_pred             CccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          516 HIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                      ........     .       +..          +......+|++++.++|.||||+|++.|+++
T Consensus       392 ~~~l~~~g-----~-------~~~----------~~~~~~~l~~~~s~~~T~edID~~i~~L~kI  434 (434)
T d2z67a1         392 IKKTDHFG-----N-------CYL----------GTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI  434 (434)
T ss_dssp             ECTTCHHH-----H-------TCS----------SCCSCCEEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred             hhhccccC-----e-------eee----------cccCCCeEEEecCCCCCHHHHHHHHHHHhcC
Confidence            33322111     0       000          1223468999999999999999999999863

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.54  E-value=2.9e-13  Score=133.16  Aligned_cols=274  Identities=9%  Similarity=0.065  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc-CchHHHHHHHHHHcCCEEEEEecc---------------------CCccccC
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE-SEAVEAMIRTSEKRGARVMSAEFS---------------------WPRLRIN  226 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~~~~a~~~Ga~V~~~~~~---------------------~~~g~i~  226 (603)
                      .+..+++|++|++++|+++++++|+.. +++....+..+.+.|.++......                     -......
T Consensus        34 ~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (340)
T d1svva_          34 DSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLR  113 (340)
T ss_dssp             SHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCC
T ss_pred             CHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHHhhhccccccccccceeeeecccccccceeeeeccccccccc
Confidence            356789999999999999999998753 234444444443334333322110                     0112233


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCCCCCCCCCCCC-------
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPKDMDSFGLSLV-------  295 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~~m~~ldls~~-------  295 (603)
                      .++....+.........+.++.+....|.+|.+.+.+.+    ..++++|.++++|+++.++.  ...+....       
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~--~~~~~~~~~~~~~~~  191 (340)
T d1svva_         114 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASA--LSSPVNDLTLADIAR  191 (340)
T ss_dssp             HHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHH--HTSTTCCCCHHHHHH
T ss_pred             chhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhhhcccccccceeeeeccceeee--ecccccccccccccc
Confidence            444444333222222234455555555566766666522    35788999999999876654  23333222       


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      ..+....++.|..+.   +.+.+.+.....  ...    +.        .                  ...  ...++.+
T Consensus       192 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~----~~--------~------------------~~~--~~~~~~~  234 (340)
T d1svva_         192 LTDMFYIGATKAGGM---FGEALIILNDAL--KPN----AR--------H------------------LIK--QRGALMA  234 (340)
T ss_dssp             HCSEEEEECTTTTCS---SCEEEEECSGGG--CTT----HH--------H------------------HHH--HTTCCCT
T ss_pred             cceeeecCCcccccc---ccccccccchhh--hhh----hh--------h------------------hcc--cccCccc
Confidence            244555555554442   222222222111  000    00        0                  000  1223333


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ...+++.                                         +++..+...+.....++...++.++...|..+
T Consensus       235 ~~~~~~a-----------------------------------------a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  273 (340)
T d1svva_         235 KGWLLGI-----------------------------------------QFEVLMKDNLFFELGAHSNKMAAILKAGLEAC  273 (340)
T ss_dssp             TTHHHHH-----------------------------------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHH-----------------------------------------HHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC
Confidence            3322221                                         23333333345667778888899999999876


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                            |   +++++|.    ..++|.+.+.+        ....+|+++ ++..+.+                       
T Consensus       274 ------g---~~~~~p~----~~~~v~~~~~~--------~~~~~l~~~-~~~~~~~-----------------------  308 (340)
T d1svva_         274 ------G---IRLAWPS----ASNQLFPILEN--------TMIAELNND-FDMYTVE-----------------------  308 (340)
T ss_dssp             ------T---CCBSSCC----SSSEECBEEEH--------HHHHHHTTT-EECEEEE-----------------------
T ss_pred             ------C---CeeecCC----CceEEEEeCCH--------HHHHHHHHh-hhhhccc-----------------------
Confidence                  2   4555663    46788777654        345566543 2211111                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                       .            ...+.+.||+|++++||.||||+|+++|+++
T Consensus       309 -~------------~~~~~~~vR~s~~~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         309 -P------------LKDGTCIMRLCTSWATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             -E------------ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred             -c------------cCCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence             0            0122479999999999999999999999874

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.53  E-value=1.3e-13  Score=137.73  Aligned_cols=273  Identities=12%  Similarity=0.038  Sum_probs=159.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEecc-CchHHHH------------------------HHHHHHcCCEEEEEeccCCcc
Q 007454          169 SGLESAMKKRIMDFLNISENDYVYDYE-SEAVEAM------------------------IRTSEKRGARVMSAEFSWPRL  223 (603)
Q Consensus       169 ~~~~~~aR~~Ia~~lna~~~e~vf~~e-s~sV~~~------------------------~~~a~~~Ga~V~~~~~~~~~g  223 (603)
                      ...++++|+++++++|+ +.+++|+.. +++....                        .......|..+..++.. ..+
T Consensus        37 ~~~~~~l~~~la~~~g~-~~~v~f~~sGt~An~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  114 (345)
T d1v72a1          37 DELTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG-PAA  114 (345)
T ss_dssp             SHHHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC-GGG
T ss_pred             CHHHHHHHHHHHHHHCC-CcEEEECCchHHHHHHHHHHHHhcCCccccccccceeeechhhHHHhcCccccccccc-ccc
Confidence            46778999999999997 457777532 1111111                        11223446666666655 367


Q ss_pred             ccCHHHHHHHHhhcCCCCC-CeeEEEEeCccccccccccHHHHH----HHHhCCcEEEEeccccCCC---CCCCCCCC--
Q 007454          224 RINSEKLRKMVVSKGKKKK-QRGLFVFPLHSRMTGARYPYLWMR----IAQENDWHILIDACALGPK---DMDSFGLS--  293 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~-~t~Lv~~~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq~~~~---~m~~ldls--  293 (603)
                      .++.+++++.+........ ....++.....+..|...+++++.    +|+++|+.+++|+++.++.   ....+...  
T Consensus       115 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~  194 (345)
T d1v72a1         115 KLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTW  194 (345)
T ss_dssp             CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTG
T ss_pred             cccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhc
Confidence            8899999999875433222 233455555666677777776442    5899999999999986532   01112222  


Q ss_pred             CCCCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCC
Q 007454          294 LVRPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAAT  373 (603)
Q Consensus       294 ~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT  373 (603)
                      ...++.++++.+|.++.   +.|..+..........      .        .    .              ..  ...++
T Consensus       195 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~--------~----~--------------~~--~~~~~  237 (345)
T d1v72a1         195 KAGVDALSFGATKNGVL---AAEAIVLFNTSLATEM------S--------Y----R--------------RK--RAGHL  237 (345)
T ss_dssp             GGTCCEEEECCGGGTCS---SCEEEEESSGGGHHHH------H--------H----H--------------HH--HTTCC
T ss_pred             cccccccccCccccccc---cccccccchhhhhhhc------c--------c----c--------------cc--ccccc
Confidence            22345566655554442   3343333222110000      0        0    0              00  11222


Q ss_pred             CChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Q 007454          374 NTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALM  453 (603)
Q Consensus       374 ~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~  453 (603)
                      .+....++.                                         .+........+..+..+...+..++.+.|.
T Consensus       238 ~~~~~~aa~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  276 (345)
T d1v72a1         238 SSKMRFLSA-----------------------------------------QIDAYLTDDLWLRNARKANAAAQRLAQGLE  276 (345)
T ss_dssp             CSSTHHHHH-----------------------------------------HHHHHTSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhhHHhh-----------------------------------------hhHHHHHHhhhhhhccchhhHHHHHHHHHH
Confidence            222222221                                         122222233456677777888888888888


Q ss_pred             cCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHh
Q 007454          454 KLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEK  533 (603)
Q Consensus       454 ~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~  533 (603)
                      +++        .+++.+|.    ..++|.|.+.+        ..+++|+ ++||.+..+                     
T Consensus       277 ~~~--------g~~~~~p~----~~niv~~~~~~--------~~~~~L~-~~gi~v~~~---------------------  314 (345)
T d1v72a1         277 GLG--------GVEVLGGT----EANILFCRLDS--------AMIDALL-KAGFGFYHD---------------------  314 (345)
T ss_dssp             TCT--------TEEEESCC----CSSEEEEEECH--------HHHHHHH-HTTCBCBCS---------------------
T ss_pred             hcC--------CcEeccCC----CccEEEEEcCH--------HHHHHHH-HcCCCcccc---------------------
Confidence            753        37888874    36788887753        4566665 457765322                     


Q ss_pred             hhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          534 TDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                       ..+.+.||+|++++||.||||+++++|++.
T Consensus       315 -----------------~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         315 -----------------RWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             -----------------SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             -----------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                             122369999999999999999999999864

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.46  E-value=6.1e-12  Score=129.99  Aligned_cols=272  Identities=13%  Similarity=0.109  Sum_probs=168.1

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCc-hHHHHH---------------------HHHHHcCCEEEEEecc--CCccccCHHH
Q 007454          174 AMKKRIMDFLNISENDYVYDYESE-AVEAMI---------------------RTSEKRGARVMSAEFS--WPRLRINSEK  229 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~-sV~~~~---------------------~~a~~~Ga~V~~~~~~--~~~g~i~~~~  229 (603)
                      +.|+.||+++|+++++++++.... ++..+.                     ..++..|.++...+++  .....++.++
T Consensus        65 elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  144 (368)
T d1v2da_          65 ALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSA  144 (368)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHH
T ss_pred             HHHHHHHhhcccCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHH
Confidence            689999999999999998865322 222222                     2344557777766653  2245689999


Q ss_pred             HHHHHhhcCCCCCCeeEEEEeCccccccccccHHH---H-HHHHhCCcEEEEeccccCCCCCCCC---CCCCCCCcEEEE
Q 007454          230 LRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW---M-RIAQENDWHILIDACALGPKDMDSF---GLSLVRPDFLIC  302 (603)
Q Consensus       230 L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~---i-~~a~e~g~~vlvDAaq~~~~~m~~l---dls~~~~Dflv~  302 (603)
                      |++.+..      .+++++++..+|.||..++.+.   + +.|+++|++|+.|.+......-...   .........++.
T Consensus       145 l~~~~~~------~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (368)
T d1v2da_         145 LEKALTP------RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVG  218 (368)
T ss_dssp             HHTTCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEE
T ss_pred             HHHhhcc------CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceee
Confidence            9888763      6889999999999999999653   3 4689999999999865432200011   111223455667


Q ss_pred             cccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhh
Q 007454          303 SFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSI  382 (603)
Q Consensus       303 S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl  382 (603)
                      |+-|.+|.+---+|.+...++..+.+....            .                       ......+...-.+.
T Consensus       219 ~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~------------~-----------------------~~~~~~~~~~q~~~  263 (368)
T d1v2da_         219 SAGKRLEATGYRVGWIVGPKEFMPRLAGMR------------Q-----------------------WTSFSAPTPLQAGV  263 (368)
T ss_dssp             EHHHHTTCGGGCCEEEECCTTTHHHHHHHH------------H-----------------------HHTSSCCHHHHHHH
T ss_pred             cccccccccccccccccccccccchhhhhh------------h-----------------------cccccccccccccc
Confidence            777877742112677776665543222100            0                       00111111111111


Q ss_pred             hhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007454          383 EMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSL-GLTMISRRGRCLINWLVNALMKLQHPNTE  461 (603)
Q Consensus       383 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~i-Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~  461 (603)
                      +                                        .++...... -++.+.++.+...+++.+.|.++      
T Consensus       264 ~----------------------------------------~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------  297 (368)
T d1v2da_         264 A----------------------------------------EALKLARREGFYEALREGYRRRRDLLAGGLRAM------  297 (368)
T ss_dssp             H----------------------------------------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred             c----------------------------------------cccccccchhhHHHHHHHHHHhhhhhhhhHHhc------
Confidence            1                                        222221111 24566666777778888888875      


Q ss_pred             CCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccc
Q 007454          462 GNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSK  541 (603)
Q Consensus       462 g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~  541 (603)
                      |   ++++.|.    -+..+-+.+++++        ..++++++||.++.|+.|...                       
T Consensus       298 g---~~~~~p~----g~~~~~~~l~~~~--------~~~ll~~~gI~v~pg~~F~~~-----------------------  339 (368)
T d1v2da_         298 G---LRVYVPE----GTYFLMAELPGWD--------AFRLVEEARVALIPASAFYLE-----------------------  339 (368)
T ss_dssp             T---CCEECCS----BSSEEEEECTTCC--------HHHHHHHTCEECEEGGGGCSS-----------------------
T ss_pred             C---cEEecCC----ceeEEEEeCCccH--------HHHHHHhCCEEEEechhhCCC-----------------------
Confidence            2   4566653    3556666776543        446778899999988776421                       


Q ss_pred             cccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          542 SDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       542 ~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                               +.+.+.||+|++  ++.|++++.++.|+++|
T Consensus       340 ---------~~~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         340 ---------DPPKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             ---------SCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             ---------CCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence                     123479999987  68999999999999875

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=3.1e-11  Score=127.26  Aligned_cols=277  Identities=11%  Similarity=0.070  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEe---------------------ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHH
Q 007454          170 GLESAMKKRIMDFLNISENDYVYD---------------------YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSE  228 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~---------------------~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~  228 (603)
                      +..++.-+.+++|+|... -++|.                     ....+..++...++..++++...+.      .|.+
T Consensus        90 ~~~~~lE~~lA~~~g~e~-al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~------~d~~  162 (401)
T d1fc4a_          90 DSHKELEQKLAAFLGMED-AILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN------NDMQ  162 (401)
T ss_dssp             HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT------TCHH
T ss_pred             HHHHHHHHHHHHhhcCCc-eEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcC------CChH
Confidence            566778888999998742 22221                     0111223344556666777766543      2567


Q ss_pred             HHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCCcE
Q 007454          229 KLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRPDF  299 (603)
Q Consensus       229 ~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~Df  299 (603)
                      ++++++...+.....+.++++-.+.++.|.+.|+.++ ++++++|+.+++|.++.++. +..        .++ .-++|+
T Consensus       163 ~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~-~g~~G~G~~~~~~~-~~~~di  240 (401)
T d1fc4a_         163 ELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF-VGENGRGSHEYCDV-MGRVDI  240 (401)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTT-SSTTSCCHHHHTTC-TTCCSE
T ss_pred             HHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhcccc-ccCCCCccchhccC-CCCCeE
Confidence            7777665422223466899999999999999999977 58999999999999988764 111        222 236999


Q ss_pred             EEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhh
Q 007454          300 LICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGP  379 (603)
Q Consensus       300 lv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi  379 (603)
                      +++++.|-||+ + +-|++..++++++.++..  +.                             ..  .-+...+.+.+
T Consensus       241 i~~tl~Ka~gg-~-~Gg~v~g~~~~~~~l~~~--~~-----------------------------~~--~~s~~l~p~~~  285 (401)
T d1fc4a_         241 ITGTLGKALGG-A-SGGYTAARKEVVEWLRQR--SR-----------------------------PY--LFSNSLAPAIV  285 (401)
T ss_dssp             EEEESSSTTCS-S-SCEEEEECHHHHHHHHHH--CH-----------------------------HH--HHSCCCCHHHH
T ss_pred             EEeeccccccc-C-CcccccCCHHHHHHHHcC--Ch-----------------------------hh--hhcCCCCHHHH
Confidence            99999999974 3 345666666655433311  00                             00  00111122221


Q ss_pred             hhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007454          380 MSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPN  459 (603)
Q Consensus       380 ~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~  459 (603)
                      .+..                                        .+++.+..  .+...++++.+..++.+.|.++.   
T Consensus       286 ~aa~----------------------------------------~~l~~~~~--~~~~~~~l~~~~~~~~~~l~~~g---  320 (401)
T d1fc4a_         286 AASI----------------------------------------KVLEMVEA--GSELRDRLWANARQFREQMSAAG---  320 (401)
T ss_dssp             HHHH----------------------------------------HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred             HHHH----------------------------------------hhhccccc--CHHHHHHHHHHHHHHHhhhcccC---
Confidence            1111                                        45555443  46778899999999999998763   


Q ss_pred             CCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccc
Q 007454          460 TEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAK  539 (603)
Q Consensus       460 ~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~  539 (603)
                         .+   +.+     ...||+.+.+.+..   ....+.++| .++||.++.-  .-| .                    
T Consensus       321 ---~~---~~~-----~~~pIv~v~~~~~~---~a~~~~~~L-~~~Gi~v~~i--~~P-t--------------------  362 (401)
T d1fc4a_         321 ---FT---LAG-----ADHAIIPVMLGDAV---VAQKFAREL-QKEGIYVTGF--FYP-V--------------------  362 (401)
T ss_dssp             ---CC---BCC-----SSSSEEEEEEECHH---HHHHHHHHH-HHTTEECCEE--CTT-S--------------------
T ss_pred             ---Cc---cCC-----CCCCEEEEEECCHH---HHHHHHHHH-HHCCceEEeE--CCC-C--------------------
Confidence               22   112     24689988886632   122334444 4579987531  000 0                    


Q ss_pred             cccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          540 SKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       540 ~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                -..+.+.||++++...|.||||+++++|++..++
T Consensus       363 ----------Vp~g~~~lRi~~~a~hT~edId~~v~al~ev~~~  396 (401)
T d1fc4a_         363 ----------VPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  396 (401)
T ss_dssp             ----------SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ----------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence                      0122346999999999999999999999998766

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.8e-11  Score=128.23  Aligned_cols=313  Identities=13%  Similarity=0.146  Sum_probs=190.8

Q ss_pred             CCceeeecCCCC---C-CCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHH
Q 007454          107 SNHTCLDYFGIG---L-FSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDF  182 (603)
Q Consensus       107 ~~~vYLDyaa~t---l-~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~  182 (603)
                      .++-|||.++..   + -.+.++++..+.+...                  ..++..|...+|.  .+...+.-++||+|
T Consensus        36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~------------------G~~~~~sr~~~g~--~~~~~~lE~~LA~~   95 (383)
T d1bs0a_          36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQF------------------GIGSGGSGHVSGY--SVVHQALEEELAEW   95 (383)
T ss_dssp             TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHH------------------CSCCCSBTTTTCC--CHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEcccccccCCCHHHHHHHHHHHHHh------------------CCCCCccccccCc--chHHHHHHHHHHHh
Confidence            345688777663   2 2556666654433211                  1123333333333  35667788899999


Q ss_pred             cCCCCCcEEE-----------------------eccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCC
Q 007454          183 LNISENDYVY-----------------------DYESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGK  239 (603)
Q Consensus       183 lna~~~e~vf-----------------------~~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~  239 (603)
                      +|.+ +-++|                       |..  ....+....+..++++...+-      -|.++|++.+...  
T Consensus        96 ~g~e-~al~~~SG~~an~~~i~al~~~~d~v~~d~~--~h~si~~g~~~~~~~~~~~~h------nd~~~le~~l~~~--  164 (383)
T d1bs0a_          96 LGYS-RALLFISGFAANQAVIAAMMAKEDRIAADRL--SHASLLEAASLSPSQLRRFAH------NDVTHLARLLASP--  164 (383)
T ss_dssp             HTCS-EEEEESCHHHHHHHHHHHHCCTTCEEEEETT--CCHHHHHHHHTSSSEEEEECT------TCHHHHHHHHHSC--
T ss_pred             cCCC-ceEEecccchhhHHHHHhhcCCCceEEeecc--ccHHHhhccccCCCcceEecc------hHHHHHHHHhccc--
Confidence            9964 22322                       222  122344555667777766543      2688999988742  


Q ss_pred             CCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC-----CCCCCCCCcEEEEcccccCCCCCC
Q 007454          240 KKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS-----FGLSLVRPDFLICSFYQIFGENPS  313 (603)
Q Consensus       240 ~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~-----ldls~~~~Dflv~S~hK~fG~~P~  313 (603)
                       ++++.++++-.+.+++|.+.|+.++ ++++++|+.++||-++..+. +.+     .+.-...+|++++++=|-||.   
T Consensus       165 -~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv-~G~~g~G~~~~~~~~~~~~~~t~~ka~g~---  239 (383)
T d1bs0a_         165 -CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGV-IGEQGRGSCWLQKVKPELLVVTFGKGFGV---  239 (383)
T ss_dssp             -CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT-SSGGGCCHHHHTTCCCSEEEEESSSTTSS---
T ss_pred             -CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeee-cCCcccchHHHcCCccccccccccccccc---
Confidence             3467899999999999999999966 68999999999999987764 011     122235688999999998884   


Q ss_pred             ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccc
Q 007454          314 GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQG  393 (603)
Q Consensus       314 G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~  393 (603)
                      ..|++.......+.|+..  ++.                             .  .-+...+.+.+.+..          
T Consensus       240 ~Gg~v~~~~~~~~~l~~~--~~~-----------------------------~--~~s~~~~p~~~aa~~----------  276 (383)
T d1bs0a_         240 SGAAVLCSSTVADYLLQF--ARH-----------------------------L--IYSTSMPPAQAQALR----------  276 (383)
T ss_dssp             CCEEEEECHHHHHHHHHH--CHH-----------------------------H--HSSBCCCHHHHHHHH----------
T ss_pred             cccccccchhHHHHHHhh--chh-----------------------------h--hhcccccchHHHHHH----------
Confidence            234445555444333311  100                             0  011112222222211          


Q ss_pred             hhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCC
Q 007454          394 EISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKI  473 (603)
Q Consensus       394 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~  473 (603)
                                                    ++++++.....+....++..+.+++.+.|.++.         +.+.+   
T Consensus       277 ------------------------------~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g---------~~~~~---  314 (383)
T d1bs0a_         277 ------------------------------ASLAVIRSDEGDARREKLAALITRFRAGVQDLP---------FTLAD---  314 (383)
T ss_dssp             ------------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS---------CEECS---
T ss_pred             ------------------------------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC---------CccCC---
Confidence                                          577777665677888889999999999998763         22221   


Q ss_pred             CCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCC
Q 007454          474 RFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLG  553 (603)
Q Consensus       474 ~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  553 (603)
                        ...||+.+.+.+..   -...+.++| .++||.++...  .| .                              -..+
T Consensus       315 --~~s~Ii~v~~g~~~---~a~~~~~~L-~~~Gi~v~~~~--~P-t------------------------------Vp~g  355 (383)
T d1bs0a_         315 --SCSAIQPLIVGDNS---RALQLAEKL-RQQGCWVTAIR--PP-T------------------------------VPAG  355 (383)
T ss_dssp             --CCSSBCCEEEESHH---HHHHHHHHH-HHTTEECCEEC--TT-S------------------------------SCTT
T ss_pred             --CCCCEEEEEECCHH---HHHHHHHHH-HHCCceEEEEc--CC-C------------------------------CCCC
Confidence              23577777775521   111233444 45799876431  11 0                              0122


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHH
Q 007454          554 ITVVTASLGYLANFEDVYRLWAFVAQ  579 (603)
Q Consensus       554 ~g~VR~Slg~~tt~eDVd~l~~~l~~  579 (603)
                      .+.||++++.++|+||||+|+++|..
T Consensus       356 ~~~lRi~~~a~ht~edid~l~~~L~~  381 (383)
T d1bs0a_         356 TARLRLTLTAAHEMQDIDRLLEVLHG  381 (383)
T ss_dssp             CEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999999875

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.20  E-value=1.5e-10  Score=119.33  Aligned_cols=132  Identities=10%  Similarity=0.058  Sum_probs=91.8

Q ss_pred             HHHHcCCCCC-cEEEe-ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc
Q 007454          179 IMDFLNISEN-DYVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT  256 (603)
Q Consensus       179 Ia~~lna~~~-e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T  256 (603)
                      ++..+++.+. +++.. +++.++   .......|++.+.++++..++.+++++|+++|.+      +|+.++++|   +.
T Consensus        62 al~al~~~~gdeVi~~~~~~~~~---~~ai~~~g~~pv~~d~~~~~~~~d~~~l~~~i~~------~tkaIi~~h---~~  129 (376)
T d1mdoa_          62 ALMALGIGEGDEVITPSMTWVST---LNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP------QTKAIIPVH---YA  129 (376)
T ss_dssp             HHHHTTCCTTCEEEEESSSCHHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT------TEEEECCBC---GG
T ss_pred             HHHHhCCCCCCEEEEeccccccc---ccchhccccceeeecccccccCCCHHHHHHhcCC------CCeEEEEeC---CC
Confidence            3456777764 45433 444443   3334567999999999866788999999999974      688887664   68


Q ss_pred             cccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          257 GARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       257 G~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      |...|++.+ .+|+++|+.|+.||||+.|.......+..++..+++|..+|+++. + +-|+++.++..
T Consensus       130 G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~-g-~GG~i~t~~~~  196 (376)
T d1mdoa_         130 GAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITC-A-EGGIVVTDNPQ  196 (376)
T ss_dssp             GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCS-S-SCEEEEESCHH
T ss_pred             CCccchhHHHHHHHhcCceEEeccchhccCeeCCeecccccCccccCCCcCCCCC-C-CCCEEEEechh
Confidence            999999855 589999999999999988852122333445545555555698873 3 34777776653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.19  E-value=2.9e-10  Score=119.54  Aligned_cols=274  Identities=12%  Similarity=0.054  Sum_probs=167.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEecc-----------------------CchHHHHHHHHHHcCCEEEEEeccCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYDYE-----------------------SEAVEAMIRTSEKRGARVMSAEFSWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~~e-----------------------s~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~  226 (603)
                      ...++.-++||+|+|.+ +-++|...                       ......++..++..|+++...+-.      +
T Consensus        90 ~~h~~LE~~lA~~~g~e-~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn------d  162 (396)
T d2bwna1          90 AYHRRLEAEIAGLHQKE-AALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN------D  162 (396)
T ss_dssp             HHHHHHHHHHHHHTTCS-EEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT------C
T ss_pred             hHHHHHHHHHHHHhCCC-ceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc------h
Confidence            46678888999999984 22333211                       011223455566667777765432      5


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCC--------CCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDS--------FGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~--------ldls~~~~  297 (603)
                      .++|++++...  .+.++.++++-.+-.+.|.+.|+.++ ++++++|++++||-+...|. +.+        +++. ..+
T Consensus       163 ~~~l~~l~~~~--~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv-~G~~G~G~~~~~~~~-~~~  238 (396)
T d2bwna1         163 VAHLRELIAAD--DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGM-YGPRGAGVAERDGLM-HRI  238 (396)
T ss_dssp             HHHHHHHHHHS--CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTT-SSTTSCCHHHHHTCG-GGC
T ss_pred             HHHhhhHHhhh--cccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeeee-eccccccchhhcCCc-eee
Confidence            67788777642  23467899999999999999999865 58999999999999877764 111        2232 358


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |+++.|+=|-||.   .-|++..++.+.+.|+.  +++.          +                  .  | ++.++.+
T Consensus       239 di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~~--~~~~----------~------------------i--f-Stalpp~  282 (396)
T d2bwna1         239 DIFNGTLAKAYGV---FGGYIAASARMVDAVRS--YAPG----------F------------------I--F-STSLPPA  282 (396)
T ss_dssp             SEEEEESSSTTCS---CCEEEEECHHHHHHHHH--HCHH----------H------------------H--T-SBCCCHH
T ss_pred             eeeeecccccccc---cccccchhHHHHHHHHh--hcch----------h------------------h--h-cccCcHH
Confidence            9999999999993   12445555555443431  1100          0                  0  1 1112222


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .+.+..                                        ++++.+.+-.......+++...+++.+.|.++  
T Consensus       283 ~~aa~~----------------------------------------~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~--  320 (396)
T d2bwna1         283 IAAGAQ----------------------------------------ASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--  320 (396)
T ss_dssp             HHHHHH----------------------------------------HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHH----------------------------------------HHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc--
Confidence            221111                                        45555432223444566677788899988876  


Q ss_pred             CCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcc
Q 007454          458 PNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDRE  537 (603)
Q Consensus       458 ~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~  537 (603)
                          |.+..        ....||+.+.+.+..   -...+.++|+.++||.+.....  | .                  
T Consensus       321 ----g~~~~--------~~~spIvpv~ig~~~---~~~~~a~~lL~e~Gi~v~~i~~--P-t------------------  364 (396)
T d2bwna1         321 ----GMPII--------DHGSHIVPVVIGDPV---HTKAVSDMLLSDYGVYVQPINF--P-T------------------  364 (396)
T ss_dssp             ----TCCBC--------CCSSSCEEEECCCHH---HHHHHHHHHHHHHCEECCEECT--T-T------------------
T ss_pred             ----CCCcC--------CCCCCEEEEEeCCHH---HHHHHHHHHHHhCCEEEEEECC--C-c------------------
Confidence                33221        134789998886521   1122334566667888753211  0 0                  


Q ss_pred             cccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 007454          538 AKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQF  580 (603)
Q Consensus       538 ~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~  580 (603)
                                  -..+...+|++++-.+|.||||+|+++|+++
T Consensus       365 ------------Vp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         365 ------------VPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             ------------SCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             ------------CCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence                        0122357999999999999999999999875

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.19  E-value=9.7e-10  Score=112.63  Aligned_cols=145  Identities=7%  Similarity=0.032  Sum_probs=91.8

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCchHHHH--------------------HHHHHHcCCEEEEEeccCCccccCHHHHHHH
Q 007454          174 AMKKRIMDFLNISENDYVYDYESEAVEAM--------------------IRTSEKRGARVMSAEFSWPRLRINSEKLRKM  233 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~sV~~~--------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~  233 (603)
                      +.|+.|++++|+++++++....+.....+                    .......|+++..++++..++....+++.+.
T Consensus        61 ~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  140 (355)
T d1lc5a_          61 HLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEA  140 (355)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHH
T ss_pred             HHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhhccccccccCCccceeccccccccccceeeeeeccCCccceeeeeec
Confidence            68999999999999998765432211111                    1223445778888887643333323444444


Q ss_pred             HhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc--CCCCCCCCC-CCCCCCcEEEEcccc
Q 007454          234 VVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL--GPKDMDSFG-LSLVRPDFLICSFYQ  306 (603)
Q Consensus       234 l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~--~~~~m~~ld-ls~~~~Dflv~S~hK  306 (603)
                      +.      ++++++.++--+|.||..++.+.+    ++|+++++++++|-+-.  .+....... .....-.+++.|+-|
T Consensus       141 ~~------~~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK  214 (355)
T d1lc5a_         141 LT------PDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTK  214 (355)
T ss_dssp             CC------TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTT
T ss_pred             cc------cccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeeccccc
Confidence            43      368888888889999999997633    46789999999997643  322100111 122234588899999


Q ss_pred             cCCCCCCceEEEEEeCCC
Q 007454          307 IFGENPSGFGCLFVKKST  324 (603)
Q Consensus       307 ~fG~~P~G~G~L~vkk~~  324 (603)
                      .||.+-.-+|.++..++.
T Consensus       215 ~~~l~GlR~G~~i~~~~~  232 (355)
T d1lc5a_         215 FYAIPGLRLGYLVNSDDA  232 (355)
T ss_dssp             TTTCTTTCCEEEECCCHH
T ss_pred             ccccccccccceeccchh
Confidence            999531227888876543

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=7e-09  Score=106.21  Aligned_cols=147  Identities=9%  Similarity=0.066  Sum_probs=93.0

Q ss_pred             HHHHHHHHHcCCCCCcEEEeccCc-hHHHH----------------------HHHHHHcCCEEEEEeccCCccccCHHHH
Q 007454          174 AMKKRIMDFLNISENDYVYDYESE-AVEAM----------------------IRTSEKRGARVMSAEFSWPRLRINSEKL  230 (603)
Q Consensus       174 ~aR~~Ia~~lna~~~e~vf~~es~-sV~~~----------------------~~~a~~~Ga~V~~~~~~~~~g~i~~~~L  230 (603)
                      +.|+.|++++|++|++++.+..+. ++..+                      ...++..|.++..++.+ ++..++.+++
T Consensus        60 ~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~-~~~~~d~~~l  138 (354)
T d1fg7a_          60 AVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL-DNWQLDLQGI  138 (354)
T ss_dssp             HHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC-TTSCCCHHHH
T ss_pred             HHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhccCceeeccccc-cccccchhhh
Confidence            789999999999999997764332 22222                      22334457777776665 4667888888


Q ss_pred             HHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH---H-HHhCCcEEEEecc-ccCCCCCCCCCCCCCCCcEEEEccc
Q 007454          231 RKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR---I-AQENDWHILIDAC-ALGPKDMDSFGLSLVRPDFLICSFY  305 (603)
Q Consensus       231 ~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~---~-a~e~g~~vlvDAa-q~~~~~m~~ldls~~~~Dflv~S~h  305 (603)
                      ++.+.       +++++.++.-+|.||..++-+.+.   . ++.+++.++-|+. -+.+....+.......--+++.||-
T Consensus       139 ~~~~~-------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S~S  211 (354)
T d1fg7a_         139 SDKLD-------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLS  211 (354)
T ss_dssp             HTSCT-------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESS
T ss_pred             hhccc-------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhccccccchhhcccccceEEeCCc
Confidence            76542       589999999999999999976432   2 3444555555553 2222110111122334456678999


Q ss_pred             ccCCCCCCceEEEEEeCCCCcCc
Q 007454          306 QIFGENPSGFGCLFVKKSTVPIL  328 (603)
Q Consensus       306 K~fG~~P~G~G~L~vkk~~~~~L  328 (603)
                      |.||.+--.+|.++..++.++.+
T Consensus       212 K~~~laGlRiGy~i~~~~~i~~l  234 (354)
T d1fg7a_         212 KAFALAGLRCGFTLANEEVINLL  234 (354)
T ss_dssp             STTCCGGGCCEEEEECHHHHHHH
T ss_pred             cccCCCccccccccccchhhhhh
Confidence            99994212378888776655433

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.3e-08  Score=104.11  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=74.8

Q ss_pred             HHHHHHcCCEEEEEeccC--CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH----HHHHHHhCCcEEE
Q 007454          203 IRTSEKRGARVMSAEFSW--PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL----WMRIAQENDWHIL  276 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~--~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~----~i~~a~e~g~~vl  276 (603)
                      ...++..|.++..++.+.  .+..++.+++++.+..     +++++++++.-+|.||..+|.+    ++.+|+++|++++
T Consensus        96 ~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~-----~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI  170 (361)
T d1d2fa_          96 YKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-----PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVI  170 (361)
T ss_dssp             HHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-----TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEE
T ss_pred             hHHHHhhcceEEeecccccccccccccccchhhccc-----CCceeEEecccccccccccchhhhhhhhhhhhhhheeee
Confidence            344556677877776531  2345889999998864     4789999999999999999954    3457899999999


Q ss_pred             EeccccC----CCCCCCCCCCCCC--CcEEEEcccccCCCCCCceEEEEEeC
Q 007454          277 IDACALG----PKDMDSFGLSLVR--PDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       277 vDAaq~~----~~~m~~ldls~~~--~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      +|.+...    +.  .+..+....  -..+..|+=|.||.+-.++|.+++..
T Consensus       171 ~De~y~~~~~~~~--~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~  220 (361)
T d1d2fa_         171 SDEIHMDMVWGEQ--PHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIEN  220 (361)
T ss_dssp             EECTTTTCBCSSS--CCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECS
T ss_pred             ecccccccccccc--cccccccccccccccccccccccccccccceeeecch
Confidence            9987432    11  122222222  23677788887774212466666543

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=5.5e-09  Score=103.62  Aligned_cols=138  Identities=12%  Similarity=0.133  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHcCCCCCcEEEe-ccCchHHHHHHHHHHcCCEEEEEec----------------------cCCccccC
Q 007454          170 GLESAMKKRIMDFLNISENDYVYD-YESEAVEAMIRTSEKRGARVMSAEF----------------------SWPRLRIN  226 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~~~e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~----------------------~~~~g~i~  226 (603)
                      ....+.+++|++++|.+  +.+|. .-+.++...+..+.+.|..+...+.                      +...+..+
T Consensus        34 p~~~~le~~lA~~~G~~--~~~~~~sGt~A~~~al~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (343)
T d1m6sa_          34 PTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD  111 (343)
T ss_dssp             HHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEEC
T ss_pred             HHHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHHHhccCCceeccccccceeeecccccccccceeeccccccCccC
Confidence            34568889999999974  34443 2233444444444444544443321                      11245678


Q ss_pred             HHHHHHHHhhcCCCCCCeeEEEE-eCccccccccccHHHHH----HHHhCCcEEEEeccccCCCC----CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQRGLFVF-PLHSRMTGARYPYLWMR----IAQENDWHILIDACALGPKD----MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t~Lv~~-~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq~~~~~----m~~ldls~~~~  297 (603)
                      .+.+++.|....+...++.++.+ ...++..|.++|++.+.    .|+++|+.+++|+++..+..    ....+. ....
T Consensus       112 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~-~~~~  190 (343)
T d1m6sa_         112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY-AGYA  190 (343)
T ss_dssp             HHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH-HHTC
T ss_pred             HHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhh-cccc
Confidence            88888888754433345555544 46667777888886442    46899999999998765320    000111 1235


Q ss_pred             cEEEEcccccCCC
Q 007454          298 DFLICSFYQIFGE  310 (603)
Q Consensus       298 Dflv~S~hK~fG~  310 (603)
                      +..+++.+|..|+
T Consensus       191 ~~~~~~~~~~~~g  203 (343)
T d1m6sa_         191 DSVMFCLSKGLCA  203 (343)
T ss_dssp             SEEEEESSSTTCC
T ss_pred             ccccccccccccc
Confidence            6666777776553

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.02  E-value=1.1e-08  Score=105.61  Aligned_cols=144  Identities=14%  Similarity=0.144  Sum_probs=95.5

Q ss_pred             HHHHHHHHHcC-------CCCCcEEEeccCch----------------------HHHHHHHHHHcCCEEEEEeccCC-cc
Q 007454          174 AMKKRIMDFLN-------ISENDYVYDYESEA----------------------VEAMIRTSEKRGARVMSAEFSWP-RL  223 (603)
Q Consensus       174 ~aR~~Ia~~ln-------a~~~e~vf~~es~s----------------------V~~~~~~a~~~Ga~V~~~~~~~~-~g  223 (603)
                      +.|+.|+++++       .++++++++..+..                      -......++..|+++..++.+.. +.
T Consensus        66 ~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~  145 (388)
T d1gdea_          66 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEF  145 (388)
T ss_dssp             HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTT
T ss_pred             HHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCC
Confidence            67888888763       45567876543221                      11123445667899998887532 23


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc--C--CCCCCC-CCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL--G--PKDMDS-FGLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~--~--~~~m~~-ldls~  294 (603)
                      .++.++|++.+..      +++++.++.-+|.||..++-+.+    +.|++++++|+.|-+-.  .  +....+ ..+..
T Consensus       146 ~~d~~~l~~~~~~------~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~  219 (388)
T d1gdea_         146 RLNVDELKKYVTD------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDG  219 (388)
T ss_dssp             CCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred             CCCHHHHHHhCcc------CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccC
Confidence            6899999988863      68899999999999999997643    35789999999998621  1  110011 11111


Q ss_pred             -CCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          295 -VRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       295 -~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                       ..-.+++.|+-|.||. | |  +|.++..++..
T Consensus       220 ~~~~~i~~~S~SK~~~~-~-GlR~G~ii~~~~~~  251 (388)
T d1gdea_         220 MFERTITVNGFSKTFAM-T-GWRLGFVAAPSWII  251 (388)
T ss_dssp             CGGGEEEEEESTTTTTC-G-GGCCEEEECCHHHH
T ss_pred             CCCeEEEEeCChhhccC-c-cccEEEEEeeccch
Confidence             1234888999999985 3 5  78887666543

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=3.3e-08  Score=100.46  Aligned_cols=182  Identities=12%  Similarity=0.104  Sum_probs=108.3

Q ss_pred             CCceeeecCCC-CCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHHHHHHHHHHHHHHcC-
Q 007454          107 SNHTCLDYFGI-GLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESGLESAMKKRIMDFLN-  184 (603)
Q Consensus       107 ~~~vYLDyaa~-tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~~~~~aR~~Ia~~ln-  184 (603)
                      ++.|||+-+-. -++|+.+++++.+.+...    ..+|             -|..    |      ..+.|+.|+++++ 
T Consensus        19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~----~~~~-------------yp~~----g------~~~Lr~aia~~~~~   71 (334)
T d2f8ja1          19 RDKTYLALNENPFPFPEDLVDEVFRRLNSD----ALRI-------------YYDS----P------DEELIEKILSYLDT   71 (334)
T ss_dssp             CCSEECSSCCCSSCCCHHHHHHHHHHCCTT----GGGS-------------CCCS----S------CHHHHHHHHHHHTC
T ss_pred             CCceEEECCCCCCCCCHHHHHHHHHHhhcc----hhcC-------------CCCC----C------cHHHHHHHHHHhcc
Confidence            56899985532 256778888876543211    0000             0111    1      1368999999987 


Q ss_pred             --CCCCcEEEeccCc-hH-----------------HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          185 --ISENDYVYDYESE-AV-----------------EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       185 --a~~~e~vf~~es~-sV-----------------~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                        +++++++.+..+. ++                 ......++..|++++.++++. ++....           ...+++
T Consensus        72 ~~v~~d~I~it~G~~~~l~~l~~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~-~~~~~~-----------~~~~~~  139 (334)
T d2f8ja1          72 DFLSKNNVSVGNGADEIIYVMMLMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK-DLRIPE-----------VNVGEG  139 (334)
T ss_dssp             SSCCGGGEEEEEHHHHHHHHHHHHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCT-TSCCCC-----------CCCCTT
T ss_pred             cCCCcceEEecCcchhHHHHHhhhccccccccccccccccchhccCCccccccccc-cccccc-----------cccccc
Confidence              5678886654221 11                 112233455677777777763 332210           112367


Q ss_pred             eEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCC-CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          245 GLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPK-DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~-~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      +++.++.-+|.||.+++.+.+..+++++.++++|-+-.... .-..........-+++.|+-|.||.+--.+|.++..+.
T Consensus       140 ~~l~l~nP~NPtG~~~s~~~l~~~~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~  219 (334)
T d2f8ja1         140 DVVFIPNPNNPTGHVFEREEIERILKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEK  219 (334)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHH
T ss_pred             eEEEecccccccceeecHHHhhccccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchH
Confidence            88888888999999999988887778889999986432211 00011112223447888999998852134888887765


Q ss_pred             CCcC
Q 007454          324 TVPI  327 (603)
Q Consensus       324 ~~~~  327 (603)
                      ++..
T Consensus       220 ~i~~  223 (334)
T d2f8ja1         220 FIDA  223 (334)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=6.4e-09  Score=110.12  Aligned_cols=262  Identities=17%  Similarity=0.138  Sum_probs=155.5

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa  280 (603)
                      +..+++-.|.+|+.++.+.  +..+..+    +      +.++.-|.++.- |..|...+++.+ .++|++|..+++||.
T Consensus       167 ~~t~a~~~g~~vv~v~~~~--~~~~~~~----~------~~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~ad  233 (437)
T d1wyua1         167 LRAYLEAVGAKLLTLPLEG--GRTPLPE----V------GEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVAD  233 (437)
T ss_dssp             HHHHHHHTTCEEEEECCBT--TBCCCCC----C------CTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECC
T ss_pred             hhhhcccceeeEEeeeccc--ccchhhh----h------ccceeEEEEccc-cccccccchHHHHHHhhhccceEEeeec
Confidence            3455677899999998762  3322111    1      235666655544 678999999855 589999999988875


Q ss_pred             ccCCCCCCCCCCCCCCCcEEEEcccccCCCCCC-----ceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCC
Q 007454          281 ALGPKDMDSFGLSLVRPDFLICSFYQIFGENPS-----GFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSC  355 (603)
Q Consensus       281 q~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~-----G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~  355 (603)
                      ...-.  .--.-.++++|+++.+.++ ||- |.     |.|.+.+|+.....+....+|-++. ......+..       
T Consensus       234 ~~al~--~l~~Pg~~GaDi~~g~~q~-fg~-p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d-~~G~~~~~l-------  301 (437)
T d1wyua1         234 PLSLG--VLKPPGAYGADIAVGDGQS-LGL-PMGFGGPHFGFLATKKAFVRQLPGRLVSETVD-VEGRRGFIL-------  301 (437)
T ss_dssp             TTGGG--TBCCHHHHTCSEEEEECTT-TTC-CCGGGCSCCEEEEECGGGGGGCCSCCEEEEEB-TTSCEEEEE-------
T ss_pred             hhhhh--ccccccccccceEeeccce-ecc-ccCCCcCccccccccchhhccccccccccccc-cCCccccee-------
Confidence            33211  1122346799999999444 332 33     5699999998876665555542221 111110000       


Q ss_pred             CCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHH---hc
Q 007454          356 ETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVD---SL  432 (603)
Q Consensus       356 ~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~---~i  432 (603)
                      .+.+.+ .+-+  .+-+|.|+..--++-             ++                         ++.-++.   .-
T Consensus       302 ~lqtre-qhIr--Rekatsnict~q~l~-------------a~-------------------------~a~~Y~~~lG~~  340 (437)
T d1wyua1         302 TLQARE-QYIR--RAKAKSNITTNAQLT-------------AL-------------------------MGAMYLAALGPE  340 (437)
T ss_dssp             CCGGGS-HHHH--GGGSSCCCCSCCHHH-------------HH-------------------------HHHHHHHHHHHH
T ss_pred             eccccc-cccc--ccccccchhhHHHHH-------------HH-------------------------HHHHHhhhcCcc
Confidence            011000 0111  256777765332221             11                         1222333   33


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeC
Q 007454          433 GLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYG  512 (603)
Q Consensus       433 Gl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G  512 (603)
                      ||.++.++....++||.++|.++.     |   ++++.+..   .-..+.+.+ +     ++...|.+.+.++||..++-
T Consensus       341 GL~~ia~~a~~~A~yl~~~L~~~~-----g---~~~~~~~~---~f~ef~v~~-~-----~~~~~i~k~L~d~G~~~~~~  403 (437)
T d1wyua1         341 GLREVALKSVEMAHKLHALLLEVP-----G---VRPFTPKP---FFNEFALAL-P-----KDPEAVRRALAERGFHGATP  403 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTST-----T---CEECSCSS---BCSEEEEEC-S-----SCHHHHHHHHHHTTCCCCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhcC-----C---eeccCCCC---eeeEEEEEC-C-----CCHHHHHHHHHhCCCCCCcc
Confidence            799999999999999999998864     2   56665432   122333332 2     24566777666788854321


Q ss_pred             cccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          513 SLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       513 ~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      .+                                   .....+.+.+++.-.+|.||||+|+++++++|
T Consensus       404 ~~-----------------------------------~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         404 VP-----------------------------------REYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             CC-----------------------------------TTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cc-----------------------------------cCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            00                                   01123689999999999999999999999874

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=98.99  E-value=3.9e-09  Score=109.82  Aligned_cols=143  Identities=14%  Similarity=0.187  Sum_probs=91.9

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccC-chHHHH---------------------HHHHHHcCCEEEEEeccCC-ccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYES-EAVEAM---------------------IRTSEKRGARVMSAEFSWP-RLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es-~sV~~~---------------------~~~a~~~Ga~V~~~~~~~~-~g~  224 (603)
                      +.|+.|++++      ++++++++++..+ +++..+                     ...++..|++++.++.... +..
T Consensus        71 ~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (388)
T d1j32a_          71 RLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFK  150 (388)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTC
T ss_pred             HHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence            5666676664      4678888776432 122222                     2233445666666665321 235


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc-cCCCC-CCCCCCCCC---
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA-LGPKD-MDSFGLSLV---  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq-~~~~~-m~~ldls~~---  295 (603)
                      ++.++|++.+..      +++++.++.-+|.||..++.+.+    ..|+++|++|++|-+- ....+ -....+...   
T Consensus       151 ~d~~~l~~~~~~------~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~  224 (388)
T d1j32a_         151 VSPEQIRQAITP------KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPE  224 (388)
T ss_dssp             CCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHH
T ss_pred             CCHHHHHHhCCC------CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcc
Confidence            889999988863      68899999899999999998744    3579999999999863 11110 011112111   


Q ss_pred             --CCcEEEEcccccCCCCCCc--eEEEEEeCCC
Q 007454          296 --RPDFLICSFYQIFGENPSG--FGCLFVKKST  324 (603)
Q Consensus       296 --~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~  324 (603)
                        .-.+++.|+-|.||.  .|  +|.++..++.
T Consensus       225 ~~~~~i~~~S~SK~~~~--~GlRvG~~~~~~~~  255 (388)
T d1j32a_         225 AYERSVVCSGFAKTYAM--TGWRVGFLAGPVPL  255 (388)
T ss_dssp             HHHTEEEEEESTTTTTC--TTTCCEEEECCHHH
T ss_pred             cccceeEecCChhhhhc--chhHeEEEEECHHH
Confidence              235889999999995  37  7888765544

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=98.98  E-value=1.1e-08  Score=106.19  Aligned_cols=149  Identities=11%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             HHHHHHHHHcC------CCCCcEEEeccCc-hHHHH---------------------HHHHHHcCCEEEEEeccCCcccc
Q 007454          174 AMKKRIMDFLN------ISENDYVYDYESE-AVEAM---------------------IRTSEKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       174 ~aR~~Ia~~ln------a~~~e~vf~~es~-sV~~~---------------------~~~a~~~Ga~V~~~~~~~~~g~i  225 (603)
                      +.|+.|+++++      +++++++++..+. ++..+                     ...++..|+++..++.+....  
T Consensus        75 ~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~--  152 (403)
T d1wsta1          75 PLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGM--  152 (403)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEE--
T ss_pred             HHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCC--
Confidence            68888888864      6888988765432 22222                     233445566776666652111  


Q ss_pred             CHHHHHHHHh-hcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc----CCCCCCCC-CCCCC
Q 007454          226 NSEKLRKMVV-SKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL----GPKDMDSF-GLSLV  295 (603)
Q Consensus       226 ~~~~L~~~l~-~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~----~~~~m~~l-dls~~  295 (603)
                      +...+..... ...+.++.+.++.++.-+|.||..++.+.+    .+|++++++|++|-+-.    .+....++ .+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~  232 (403)
T d1wsta1         153 RVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDY  232 (403)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSS
T ss_pred             ccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCC
Confidence            1222221111 001223467888899999999999999633    46899999999997532    12110121 12344


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +.-.++.|+.|+|+ +--.+|.++..++.+
T Consensus       233 ~~~i~~~S~SK~~~-~G~RiG~~i~~~~~i  261 (403)
T d1wsta1         233 GRVIYLGTFSKILA-PGFRIGWVAAHPHLI  261 (403)
T ss_dssp             SCEEEEEESTTTTC-GGGCCEEEEECHHHH
T ss_pred             CcEEEEccccceec-CcccccccccchHHH
Confidence            56789999999997 234588888766544

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=98.95  E-value=2.3e-08  Score=105.25  Aligned_cols=149  Identities=15%  Similarity=0.199  Sum_probs=94.0

Q ss_pred             HHHHHHHHHcC--------CCCCcEEEeccCc-hHHHHHHHH---------------------H-HcCCEEEEEeccCCc
Q 007454          174 AMKKRIMDFLN--------ISENDYVYDYESE-AVEAMIRTS---------------------E-KRGARVMSAEFSWPR  222 (603)
Q Consensus       174 ~aR~~Ia~~ln--------a~~~e~vf~~es~-sV~~~~~~a---------------------~-~~Ga~V~~~~~~~~~  222 (603)
                      +.|+.||++++        ++|++++.+..+. ++..+....                     + ..|++++.++++..+
T Consensus        88 ~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~  167 (431)
T d1m7ya_          88 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSN  167 (431)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchh
Confidence            68888888764        5678887764322 222222221                     1 236666666654222


Q ss_pred             -cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC----CCCCCCCCCC
Q 007454          223 -LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG----PKDMDSFGLS  293 (603)
Q Consensus       223 -g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~----~~~m~~ldls  293 (603)
                       ..++.+++++.+...++...+++++.++.-+|.||..++-+.    ++.|+++|++|++|.+...    +.  ..+++.
T Consensus       168 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~--~~~s~~  245 (431)
T d1m7ya_         168 GFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVM  245 (431)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHH
T ss_pred             cccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCC--CCCCHH
Confidence             357888998888754444567999999999999999999763    3467899999999986321    11  011110


Q ss_pred             C-------------CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          294 L-------------VRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       294 ~-------------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      .             ..-=+++.|+-|.||.+-.-+|+++..++.
T Consensus       246 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~  289 (431)
T d1m7ya_         246 EVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDM  289 (431)
T ss_dssp             HHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHH
T ss_pred             HHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhh
Confidence            0             001267789999999521227888876554

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.95  E-value=6.8e-08  Score=102.17  Aligned_cols=332  Identities=14%  Similarity=0.084  Sum_probs=192.6

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCc-EEE
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISEND-YVY  192 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e-~vf  192 (603)
                      |+-...|+.|++++...+++-                 |.-+-|......|.. ..+++.-+.++..++||++++. ++-
T Consensus        38 aSEN~~S~~v~~algS~l~nk-----------------YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~an  100 (470)
T d1rv3a_          38 ASENFASRAVLEALGSCLNNK-----------------YSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVN  100 (470)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTC-----------------CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred             cCCCcCCHHHHHHhcchhccc-----------------ccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhcccc
Confidence            566688999999977654321                 122445444433433 4778888999999999998654 432


Q ss_pred             e-ccCc--hHHHHHHHHHHcC-------------------------------CEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          193 D-YESE--AVEAMIRTSEKRG-------------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       193 ~-~es~--sV~~~~~~a~~~G-------------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                      . ..|.  +-..+....-+.|                               +++...+++..++.||.+++++..... 
T Consensus       101 Vqp~SGs~An~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~-  179 (470)
T d1rv3a_         101 VQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLF-  179 (470)
T ss_dssp             CCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-
T ss_pred             ccccCCccHHHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhh-
Confidence            1 1111  1111111222333                               445555566556889999999988753 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                          +++|+.+..-++  =...|++.++ +|.+.|+++++|+++.+|-     --.||+    .+|++++|-||-|.+ |
T Consensus       180 ----kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~----~aDvvt~tTHKtlrG-P  248 (470)
T d1rv3a_         180 ----HPKLIIAGTSCY--SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLRG-C  248 (470)
T ss_dssp             ----CCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGCC-C
T ss_pred             ----CcceEeechhhc--cccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhh----eeeeeeeehhhhccC-C
Confidence                578888876543  3467888775 7999999999999875531     114553    369999999998765 8


Q ss_pred             CceEEEEEeCCCCcCcCCCCCC-CceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccc
Q 007454          313 SGFGCLFVKKSTVPILVDNTSS-GMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLE  391 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~g-G~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~  391 (603)
                      .| |+++.|++... ..| ..| +...      . +  .+    .+.. .--|.    ..|.+-..-|+++++       
T Consensus       249 rg-GiI~~~~~~~~-~~~-~~~~~~~~------~-~--~~----~i~~-avFPg----~qggph~~~IAa~Av-------  300 (470)
T d1rv3a_         249 RA-GMIFYRRGVRS-VDP-KTGKEILY------N-L--ES----LINS-AVFPG----LQGGPHNHAIAGVAV-------  300 (470)
T ss_dssp             SC-EEEEEECSBCC---------CCBC------C-H--HH----HHHH-HHTTT----TCCSCCHHHHHHHHH-------
T ss_pred             cc-eEEEEcccccc-ccc-cccchhHH------H-H--HH----HHhh-hcCcc----ccccchhhHHHHHHH-------
Confidence            87 88888877532 111 112 1100      0 0  00    0000 00011    234455556666552       


Q ss_pred             cchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCC
Q 007454          392 QGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGP  471 (603)
Q Consensus       392 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp  471 (603)
                                                       ++..+..-....-.+++..-++.|.+.|.+.      |.+++  .|-
T Consensus       301 ---------------------------------a~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~------G~~v~--~gg  339 (470)
T d1rv3a_         301 ---------------------------------ALKQAMTPEFKEYQRQVVANCRALSAALVEL------GYKIV--TGG  339 (470)
T ss_dssp             ---------------------------------HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEG--GGS
T ss_pred             ---------------------------------HHHHhcChHHHHHHHHHHHHHHHHHHHHHhC------Cceec--cCC
Confidence                                             3332211113344444555555666666653      43332  232


Q ss_pred             CCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCC
Q 007454          472 KIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKAN  551 (603)
Q Consensus       472 ~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  551 (603)
                          ....+|-..+....   ++...+++++++.||.+---  +-|+  ++                           ..
T Consensus       340 ----TdnHlvlvdl~~~g---~~g~~ae~~Le~~gI~~Nkn--~iP~--D~---------------------------~~  381 (470)
T d1rv3a_         340 ----SDNHLILVDLRSKG---TDGGRAEKVLEACSIACNKN--TCPG--DK---------------------------SA  381 (470)
T ss_dssp             ----CSSSEEEEEGGGGT---CCHHHHHHHHHHTTEECEEE--CCSS--CS---------------------------CT
T ss_pred             ----CCCceEEEeecccC---CcHHHHHHHHHHcCcEECCC--cCCC--CC---------------------------CC
Confidence                24577877775432   56677899999999976421  0011  00                           01


Q ss_pred             CCCCEEEEecCCCC----CHHHHHHHHHHHHHHHh
Q 007454          552 LGITVVTASLGYLA----NFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       552 ~~~g~VR~Slg~~t----t~eDVd~l~~~l~~~l~  582 (603)
                      ...+.||+....+|    .++|+.++.++|.+.|+
T Consensus       382 ~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         382 LRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             TSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            12357999877666    67999999999999885

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=98.95  E-value=1.1e-08  Score=107.66  Aligned_cols=148  Identities=14%  Similarity=0.192  Sum_probs=94.8

Q ss_pred             HHHHHHHHHcC--------CCCCcEEEeccCc-hHHHHHHH---------------------HH-HcCCEEEEEeccCC-
Q 007454          174 AMKKRIMDFLN--------ISENDYVYDYESE-AVEAMIRT---------------------SE-KRGARVMSAEFSWP-  221 (603)
Q Consensus       174 ~aR~~Ia~~ln--------a~~~e~vf~~es~-sV~~~~~~---------------------a~-~~Ga~V~~~~~~~~-  221 (603)
                      +.|+.||++++        +++++++.+..+. ++..++..                     +. ..|+++..++.+.. 
T Consensus        87 ~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~  166 (428)
T d1iaya_          87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSN  166 (428)
T ss_dssp             HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeeccccc
Confidence            68888888863        5678887764321 22222111                     12 34788888877532 


Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHH----HHHHHhCCcEEEEeccccC----CCCCCCC---
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLW----MRIAQENDWHILIDACALG----PKDMDSF---  290 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~----i~~a~e~g~~vlvDAaq~~----~~~m~~l---  290 (603)
                      +..++.+++++.+....+..++++++.++.-+|.||..++.+.    +++|+++|++|++|.+-..    +....++   
T Consensus       167 ~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~  246 (428)
T d1iaya_         167 NFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEI  246 (428)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHH
T ss_pred             ccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccc
Confidence            3468888888776543334567899999999999999999753    3468999999999987431    1100010   


Q ss_pred             ------CCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCC
Q 007454          291 ------GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       291 ------dls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~  323 (603)
                            ......--+++.|+-|.||.  .|  +|+++..+.
T Consensus       247 ~~~~~~~~~~~~~vi~~~s~SK~~~~--~GlRiG~~~~~~~  285 (428)
T d1iaya_         247 LDEQEMTYCNKDLVHIVYSLSKDMGL--PGFRVGIIYSFND  285 (428)
T ss_dssp             HTSGGGTTSCTTSEEEEEESTTTSSC--GGGCEEEEEESCH
T ss_pred             cchhhccccccceEEEEecCCCcccC--CCccccccccccc
Confidence                  01111223788899999884  25  888876543

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=3.4e-09  Score=110.83  Aligned_cols=107  Identities=9%  Similarity=0.104  Sum_probs=81.2

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq  281 (603)
                      ....++.|.++.++++.      +.++++++|++      +|+||-+-.-+|.|..+.|++.| ++||++|+.++||.+-
T Consensus       116 ~~~~~~~Gi~~~~~d~~------d~~~~~~ai~~------~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~  183 (392)
T d1gc0a_         116 HHGIGEFGVKLRHVDMA------DLQALEAAMTP------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTY  183 (392)
T ss_dssp             HHTGGGGTCEEEEECTT------CHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTT
T ss_pred             hhhhccCCcccccCCcc------CHHHHHHhCCC------CCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCc
Confidence            34456778888887653      57888888863      79999999999999999999966 5899999999999986


Q ss_pred             cCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc-eEEEEEeCCC
Q 007454          282 LGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG-FGCLFVKKST  324 (603)
Q Consensus       282 ~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~L~vkk~~  324 (603)
                      +-|.-..|++   +++|+++-|.-|.+|+.--. .|++.+++..
T Consensus       184 atP~~~~Pl~---~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~  224 (392)
T d1gc0a_         184 CTPYLQRPLE---LGADLVVHSATKYLSGHGDITAGIVVGSQAL  224 (392)
T ss_dssp             THHHHCCGGG---GTCSEEEEETTTTTTCSSSCCCEEEEECHHH
T ss_pred             cCccccChHH---hCCCEEEEecceeecCCcccccccccchhHH
Confidence            6554224664   58999999999988632111 4455555443

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.90  E-value=3.6e-08  Score=102.43  Aligned_cols=317  Identities=13%  Similarity=0.118  Sum_probs=189.9

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      ++-...|+.|+++....+++                 -|.-+.|...+..|.. ..+++.-+.++..++||+.   |+..
T Consensus        30 aSEN~~S~~v~~a~~S~l~n-----------------kyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~---~anV   89 (405)
T d1kl1a_          30 ASENFVSRAVMEAQGSVLTN-----------------KYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAE---HANV   89 (405)
T ss_dssp             TTCCCCCHHHHHHHTSGGGG-----------------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCS---EEEC
T ss_pred             ccCCcCCHHHHHHhcCcccC-----------------cCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCC---ccee
Confidence            56667899999997665432                 1222455555444443 4677788999999999984   4322


Q ss_pred             c-cC--chHHHHHHHHHHcC--------------------------CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCe
Q 007454          194 Y-ES--EAVEAMIRTSEKRG--------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQR  244 (603)
Q Consensus       194 ~-es--~sV~~~~~~a~~~G--------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t  244 (603)
                      . .|  ++-..+....-+.|                          .++...+++..++.||.+++++++...     ++
T Consensus        90 qp~SGs~An~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~-----kP  164 (405)
T d1kl1a_          90 QPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH-----RP  164 (405)
T ss_dssp             CCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH-----CC
T ss_pred             eccCchHHHHHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHhh-----Cc
Confidence            1 11  11111111122233                          455555677667889999999998753     57


Q ss_pred             eEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEE
Q 007454          245 GLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCL  318 (603)
Q Consensus       245 ~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L  318 (603)
                      +|+.+...+  .-...|++.++ +|++.|++++.|+++..|-     -..||+    .+|++++|-||-|++ |.| |++
T Consensus       165 klIi~G~S~--y~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~----~aDvvt~tThKtlrG-Prg-g~I  236 (405)
T d1kl1a_         165 KLIVAAASA--YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP----YAHFVTTTTHKTLRG-PRG-GMI  236 (405)
T ss_dssp             SEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT----TCSEEEEESSSTTCC-CSC-EEE
T ss_pred             ceEEecccc--cccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhh----hhhheeccccccccC-CCC-ceE
Confidence            888887654  33467888776 7999999999999875431     013553    479999999998776 764 555


Q ss_pred             EEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          319 FVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       319 ~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      +.+++....+....|.|+                                  .|.+-..-|++++               
T Consensus       237 ~~~~~~~~~i~~avfPg~----------------------------------qggp~~~~iAa~A---------------  267 (405)
T d1kl1a_         237 LCQEQFAKQIDKAIFPGI----------------------------------QGGPLMHVIAAKA---------------  267 (405)
T ss_dssp             EECHHHHHHHHHHHTTTT----------------------------------CSSCCHHHHHHHH---------------
T ss_pred             EecchhHHHHHhhhCccc----------------------------------ccCcchhHHHHHH---------------
Confidence            556554433332222222                                  2334444555554               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG  478 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg  478 (603)
                                               .++..+..-....-.+++..-++.|-+.|.+.      |   ++|.+-   ....
T Consensus       268 -------------------------val~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~------G---~~vv~g---gTd~  310 (405)
T d1kl1a_         268 -------------------------VAFGEALQDDFKAYAKRVVDNAKRLASALQNE------G---FTLVSG---GTDN  310 (405)
T ss_dssp             -------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSS
T ss_pred             -------------------------HHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------C---ceeecC---CCcc
Confidence                                     23332211123344455555566666677663      4   344332   2235


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      ++|...+....   +....+++++++.||.+--   +..+. ++                       +   .....+.||
T Consensus       311 H~vlvdl~~~~---~~g~~ae~~Le~agI~~Nk---n~iP~-d~-----------------------~---~~~~~SGiR  357 (405)
T d1kl1a_         311 HLLLVDLRPQQ---LTGKTAEKVLDEVGITVNK---NTIPY-DP-----------------------E---SPFVTSGIR  357 (405)
T ss_dssp             SEEEEECGGGT---CCHHHHHHHHHHHTEECEE---CCCTT-CS-----------------------S---CTTTCSEEE
T ss_pred             ceeeccccccC---CcHHHHHHHHHHcCeEEcC---CcCCC-CC-----------------------C---CCCCCCcee
Confidence            67777775432   4556678888988996431   01110 00                       0   011125799


Q ss_pred             EecCCCC----CHHHHHHHHHHHHHHHhh
Q 007454          559 ASLGYLA----NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Slg~~t----t~eDVd~l~~~l~~~l~~  583 (603)
                      +....+|    .++|+.++.++|.+.|+.
T Consensus       358 iGT~a~TtrG~~e~dm~~ia~~I~~~l~~  386 (405)
T d1kl1a_         358 IGTAAVTTRGFGLEEMDEIAAIIGLVLKN  386 (405)
T ss_dssp             EECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred             ecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence            9887766    589999999999998864

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=7.1e-08  Score=100.60  Aligned_cols=319  Identities=12%  Similarity=0.096  Sum_probs=188.0

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      |+-...|+.|++++...+++                 -|.-+.|......|.+ ..+++.-+.++..++||+.-.++=..
T Consensus        33 aSEN~~S~~v~~a~~S~l~n-----------------kYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~anVqp~   95 (416)
T d1dfoa_          33 ASENYTSPRVMQAQGSQLTN-----------------KYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPH   95 (416)
T ss_dssp             TTCCCCCHHHHHHHTSGGGG-----------------CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCS
T ss_pred             cCcccCCHHHHHHhcCcccC-----------------cccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcceeecc
Confidence            56667899999997665432                 1222455544433443 46777789999999999843333000


Q ss_pred             ccCchHHHHHHHHHHcC--------------------------CEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEE
Q 007454          194 YESEAVEAMIRTSEKRG--------------------------ARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLF  247 (603)
Q Consensus       194 ~es~sV~~~~~~a~~~G--------------------------a~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv  247 (603)
                      .-+++-..+..+.-+.|                          .++...+++ +++.||.+++++.....     +++|+
T Consensus        96 SGs~AN~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d-~~~~IDyd~l~~~a~~~-----kPklI  169 (416)
T d1dfoa_          96 SGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEH-----KPKMI  169 (416)
T ss_dssp             SHHHHHHHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBC-SSSSBCHHHHHHHHHHH-----CCSEE
T ss_pred             cCccHHHHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccC-CccCccHHHHHHHHHHh-----ccceE
Confidence            01111111112222333                          344445555 37789999999998753     57888


Q ss_pred             EEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          248 VFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       248 ~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      .+....  .....|++.++ +|.+.|+++++|+++..|-     -..|++    .+|++++|.||-|.+ |.| |+++.|
T Consensus       170 i~G~S~--y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~----~aDvvt~tThKtlrG-Prg-giI~~~  241 (416)
T d1dfoa_         170 IGGFSA--YSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP----HAHVVTTTTHKTLAG-PRG-GLILAK  241 (416)
T ss_dssp             EEECSS--CCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTT----TSSEEEEESSSTTCC-CSC-EEEEES
T ss_pred             Eecccc--cccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCccc----ccceeeeehhhcccC-CCc-eEEEec
Confidence            888543  56788898776 7999999999999876531     013554    269999999998776 763 555555


Q ss_pred             CCCC---cCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHH
Q 007454          322 KSTV---PILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEV  398 (603)
Q Consensus       322 k~~~---~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~  398 (603)
                      ++..   ..+....+.|+                                  .|.+-..-|++++               
T Consensus       242 ~~~~~~~~~i~~avfPg~----------------------------------qggp~~~~iaa~A---------------  272 (416)
T d1dfoa_         242 GGSEELYKKLNSAVFPGG----------------------------------QGGPLMHVIAGKA---------------  272 (416)
T ss_dssp             SCCHHHHHHHHHHHTTTT----------------------------------CSSCCHHHHHHHH---------------
T ss_pred             cchHhHHHHHHhhhCccc----------------------------------ccCccHHHHHHHH---------------
Confidence            4321   12221111111                                  2333344455544               


Q ss_pred             hhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCC
Q 007454          399 RRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRG  478 (603)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg  478 (603)
                                               .++..+..-....-.+++..-++.|.+.|.+.      |   ++|.+-   ....
T Consensus       273 -------------------------val~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~------G---~~iv~g---gTdn  315 (416)
T d1dfoa_         273 -------------------------VALKEAMEPEFKTYQQQVAKNAKAMVEVFLER------G---YKVVSG---GTDN  315 (416)
T ss_dssp             -------------------------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT------T---CEEGGG---SCSS
T ss_pred             -------------------------HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC------C---cccccC---CCCC
Confidence                                     23332211123444555566666777777664      4   344321   1235


Q ss_pred             CEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEE
Q 007454          479 PALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVT  558 (603)
Q Consensus       479 ~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR  558 (603)
                      ++|-+.+.+..   ++...+++++++.||.+--   +..+. ++                     .     .....+.||
T Consensus       316 Hlvlvdl~~~~---~~G~~a~~~Le~~gI~~Nk---n~iP~-d~---------------------~-----~~~~~SGiR  362 (416)
T d1dfoa_         316 HLFLVDLVDKN---LTGKEADAALGRANITVNK---NSVPN-DP---------------------K-----SPFVTSGIR  362 (416)
T ss_dssp             SEEEEECGGGT---CCHHHHHHHHHHTTEECEE---CCCTT-CS---------------------S-----CTTTCSEEE
T ss_pred             ceeEEEecccC---CCHHHHHHHHHHcCeEEeC---CcCCC-CC---------------------C-----CCCCCCceE
Confidence            67778875532   4556788999999997631   11110 00                     0     111225799


Q ss_pred             EecCCCC----CHHHHHHHHHHHHHHHhh
Q 007454          559 ASLGYLA----NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       559 ~Slg~~t----t~eDVd~l~~~l~~~l~~  583 (603)
                      +.....|    .++|+.++.++|.+.|+.
T Consensus       363 iGT~a~TtrG~~e~d~~~iA~~I~~~l~~  391 (416)
T d1dfoa_         363 VGTPAITRRGFKEAEAKELAGWMCDVLDS  391 (416)
T ss_dssp             EECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred             eCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            9887766    579999999999988864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=98.82  E-value=3.3e-08  Score=103.35  Aligned_cols=150  Identities=17%  Similarity=0.215  Sum_probs=91.0

Q ss_pred             HHHHHHHHHc----C---CCCCcEEEeccCc-hH---------------------HHHHHHHHHcCCEEEEEeccCCccc
Q 007454          174 AMKKRIMDFL----N---ISENDYVYDYESE-AV---------------------EAMIRTSEKRGARVMSAEFSWPRLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l----n---a~~~e~vf~~es~-sV---------------------~~~~~~a~~~Ga~V~~~~~~~~~g~  224 (603)
                      +.|+.|++++    |   +++++++++..+. ++                     ......++..|+++..++.+.  ..
T Consensus        84 ~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~--~~  161 (420)
T d1vp4a_          84 VLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED--DG  161 (420)
T ss_dssp             HHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET--TE
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhcccccccc--cc
Confidence            5777777775    2   5678887764321 11                     122344566788888888762  34


Q ss_pred             cCHHHHHHHHhh---cCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCC-CCC
Q 007454          225 INSEKLRKMVVS---KGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDS-FGL  292 (603)
Q Consensus       225 i~~~~L~~~l~~---~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~-ldl  292 (603)
                      ++.+.++..+..   ..+.++.+.+++++--+|.||..++.+.+    .+|+++++++++|-+-.-    +....+ ...
T Consensus       162 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~  241 (420)
T d1vp4a_         162 MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKI  241 (420)
T ss_dssp             ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHH
T ss_pred             cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCccccccccc
Confidence            677777665542   11123456788899999999999998632    468999999999986321    110001 111


Q ss_pred             CCCCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          293 SLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      ...+.-++..|+-|+++ +---+|.++..++.++
T Consensus       242 ~~~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~  274 (420)
T d1vp4a_         242 GGPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIR  274 (420)
T ss_dssp             HCTTTEEEEEESTTTTC-GGGCEEEEECCHHHHH
T ss_pred             ccccceeEEeccccccc-cccccccccccchhhh
Confidence            12234466677777776 2234787776655443

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=1.8e-07  Score=97.08  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=75.6

Q ss_pred             HHHHHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEE
Q 007454          203 IRTSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILI  277 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlv  277 (603)
                      ...++..|+++..++... .+..++.+++++.+..      +++++.++.-+|.||..++-+.+    ..|++++++++.
T Consensus       131 ~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~------~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~  204 (395)
T d1xi9a_         131 TGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD------RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVIS  204 (395)
T ss_dssp             HHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhhhhhcCCEEEEEeccccccccchHHHHHHhhcc------cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEe
Confidence            344566788888887542 2446899999888753      68899999999999999998633    357899999999


Q ss_pred             eccccC----CCCCCCCCCCCCCCcEEEEcccccCCCCCCc--eEEEEEe
Q 007454          278 DACALG----PKDMDSFGLSLVRPDFLICSFYQIFGENPSG--FGCLFVK  321 (603)
Q Consensus       278 DAaq~~----~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G--~G~L~vk  321 (603)
                      |.+-.-    +....+..+....-=+++.|+=|.||.  .|  +|.+++.
T Consensus       205 De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~--~GlRvG~~~~~  252 (395)
T d1xi9a_         205 DEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFA--TGWRLGYMYFV  252 (395)
T ss_dssp             ECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCC--GGGCCEEEEEE
T ss_pred             ccccccccccccccchhhcCCCCCEEEEeCcchhccc--chhhcEeeEec
Confidence            986321    111011111111112677799999984  37  7888764

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.75  E-value=4.8e-07  Score=95.32  Aligned_cols=334  Identities=13%  Similarity=0.094  Sum_probs=184.3

Q ss_pred             CCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccch-HHHHHHHHHHHHHHHcCCCCCcEEEe
Q 007454          115 FGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQ-ESGLESAMKKRIMDFLNISENDYVYD  193 (603)
Q Consensus       115 aa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~-~~~~~~~aR~~Ia~~lna~~~e~vf~  193 (603)
                      |+-...|+.|++++...+++-                 |.-+.|...+..|.. ..+++.-++++..++||++..++-..
T Consensus        34 aSEN~~S~~v~~algS~l~nk-----------------YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vN   96 (463)
T d2a7va1          34 ASENFCSRAALEALGSCLNNK-----------------YSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVN   96 (463)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTC-----------------CCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEE
T ss_pred             ccCCcCCHHHHHHhcchhccc-----------------ccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCC
Confidence            566678999999977654421                 222455544433433 46788889999999999998865221


Q ss_pred             --ccCchH--HHHHHHHHH-------------------------------cCCEEEEEeccCCccccCHHHHHHHHhhcC
Q 007454          194 --YESEAV--EAMIRTSEK-------------------------------RGARVMSAEFSWPRLRINSEKLRKMVVSKG  238 (603)
Q Consensus       194 --~es~sV--~~~~~~a~~-------------------------------~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~  238 (603)
                        ..|.+.  ..+....-+                               +-.++....++..++.||.+++++..... 
T Consensus        97 Vqp~SGs~An~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~-  175 (463)
T d2a7va1          97 VQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLF-  175 (463)
T ss_dssp             CCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHH-
T ss_pred             ccccccHHHHHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhc-
Confidence              111110  000000001                               11233333445567889999999998753 


Q ss_pred             CCCCCeeEEEEeCccccccccccHHHHH-HHHhCCcEEEEeccccCCC-----CCCCCCCCCCCCcEEEEcccccCCCCC
Q 007454          239 KKKKQRGLFVFPLHSRMTGARYPYLWMR-IAQENDWHILIDACALGPK-----DMDSFGLSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       239 ~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~-~a~e~g~~vlvDAaq~~~~-----~m~~ldls~~~~Dflv~S~hK~fG~~P  312 (603)
                          +++|+.+..-+.  =...|++.++ +|.+.|+++++|+++.+|-     --.||+    .+|++++|.||-|.+ |
T Consensus       176 ----kPklIi~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~----~aDvvt~tTHKTlrG-P  244 (463)
T d2a7va1         176 ----RPRLIIAGTSAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLRG-A  244 (463)
T ss_dssp             ----CCSEEEECCSSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGCS-C
T ss_pred             ----CCceEEeccccc--ccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhh----hhhhhhchhhhhhcC-C
Confidence                578888876543  3467888776 7999999999999875531     013553    379999999997765 8


Q ss_pred             CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCcccc
Q 007454          313 SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQ  392 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~  392 (603)
                      . -|+++.|++... ..|. . |...  .  ..+.   +    .+.. .--|.    ..|.+-..-|++++         
T Consensus       245 r-gGiIl~~~~~~~-~~~~-~-~~~~--~--~~~~---~----~i~~-avFPg----~qggph~h~iAa~A---------  295 (463)
T d2a7va1         245 R-SGLIFYRKGVKA-VDPK-T-GREI--P--YTFE---D----RINF-AVFPS----LQGGPHNHAIAAVA---------  295 (463)
T ss_dssp             S-CEEEEEECSEEE-EETT-T-EEEE--E--CCCH---H----HHHH-HHTTT----TCCSCCHHHHHHHH---------
T ss_pred             C-ceEEEEcccccc-cccc-c-Cccc--h--hHHH---H----Hhhh-hcCcc----cchhhhhhhHHHHH---------
Confidence            7 466777776431 1111 0 1000  0  0000   0    0000 00011    13445555566655         


Q ss_pred             chhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCC
Q 007454          393 GEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPK  472 (603)
Q Consensus       393 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~  472 (603)
                                                     .++..+.+-....-.+++..-++.|.+.|.+.      |..+|  .|. 
T Consensus       296 -------------------------------va~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~------G~~vv--~gg-  335 (463)
T d2a7va1         296 -------------------------------VALKQACTPMFREYSLQVLKNARAMADALLER------GYSLV--SGG-  335 (463)
T ss_dssp             -------------------------------HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT------TCEEG--GGS-
T ss_pred             -------------------------------HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhC------CCeee--cCC-
Confidence                                           23333222123444555555566666777664      43332  232 


Q ss_pred             CCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCC
Q 007454          473 IRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANL  552 (603)
Q Consensus       473 ~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  552 (603)
                         .....|-+.+....   ++-..+++.+++.||.+---   ..+. ++                           ...
T Consensus       336 ---TdnHlvlvdl~~~~---~~G~~ae~~Le~~gI~~Nkn---~iP~-D~---------------------------~~~  378 (463)
T d2a7va1         336 ---TDNHLVLVDLRPKG---LDGARAERVLELVSITANKN---TCPG-DR---------------------------SAI  378 (463)
T ss_dssp             ---CSSSEEEEECTTTT---CCHHHHHHHHHHTTEECEEE---CCTT-CC---------------------------CSS
T ss_pred             ---CCCceeeeeccccC---CCHHHHHHHHHhccCccCCc---cCCC-CC---------------------------CCC
Confidence               24567777775432   45567889999999986411   1100 00                           112


Q ss_pred             CCCEEEEecCCCC----CHHHHHHHHHHHHHHHhh
Q 007454          553 GITVVTASLGYLA----NFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       553 ~~g~VR~Slg~~t----t~eDVd~l~~~l~~~l~~  583 (603)
                      ..+.||+....+|    .++|+.++.++|.+.|+.
T Consensus       379 ~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~  413 (463)
T d2a7va1         379 TPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI  413 (463)
T ss_dssp             SCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            2357999988777    479999999999988863

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=1e-07  Score=98.43  Aligned_cols=143  Identities=15%  Similarity=0.202  Sum_probs=93.6

Q ss_pred             HHHHHHHHHc------CCCCCcEEEeccC-chHHH---------------------HHHHHHHcCCEEEEEeccCC-ccc
Q 007454          174 AMKKRIMDFL------NISENDYVYDYES-EAVEA---------------------MIRTSEKRGARVMSAEFSWP-RLR  224 (603)
Q Consensus       174 ~aR~~Ia~~l------na~~~e~vf~~es-~sV~~---------------------~~~~a~~~Ga~V~~~~~~~~-~g~  224 (603)
                      +.|+.|++++      ++++++++.+..+ +++..                     ....++..|.++..++.... +..
T Consensus        72 ~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~  151 (382)
T d1b5pa_          72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFV  151 (382)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccC
Confidence            5677777766      5678888765421 12211                     12345567888888876422 235


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc----CCCCCCCCCCCCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL----GPKDMDSFGLSLVR  296 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~----~~~~m~~ldls~~~  296 (603)
                      ++.++|++.+.      ++++++.++--+|.||.+++-+.+    .+|++++++|+.|-+-.    -+....++.+. ..
T Consensus       152 ~d~~~l~~~~~------~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~  224 (382)
T d1b5pa_         152 PDPERVRRAIT------PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVA-PE  224 (382)
T ss_dssp             CCHHHHHTTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTC-TT
T ss_pred             CCHHHHHHhCC------CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcC-CC
Confidence            78888887765      368888888889999999998743    35799999999997532    12211122111 12


Q ss_pred             CcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          297 PDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                      --+++.|+=|.||. | |  +|.++..++.+
T Consensus       225 ~~i~~~s~SK~~~~-~-GlR~G~~~~~~~~i  253 (382)
T d1b5pa_         225 HTLTVNGAAKAFAM-T-GWRIGYACGPKEVI  253 (382)
T ss_dssp             TEEEEEESTTTTTC-G-GGCCEEEECCHHHH
T ss_pred             CEEEEecchhhccC-c-HhheEEEEECHHHH
Confidence            34778899999995 3 6  78887765543

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.73  E-value=3e-09  Score=110.03  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=69.5

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccc-ccccccHHHH-HHHHhCCcEEEEeccccCCC---CCCCCCCCCCCCcEE
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRM-TGARYPYLWM-RIAQENDWHILIDACALGPK---DMDSFGLSLVRPDFL  300 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~-TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~---~m~~ldls~~~~Dfl  300 (603)
                      +.++|++.|.      ++|+++.+..-+|. ++.+.+++.| ++|+++|+++++|.+...+.   . ..-..-..++|++
T Consensus       122 d~e~l~~~i~------~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~-~~~~~~~~~~di~  194 (366)
T d2aeua1         122 KVGEILNKID------KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPALKLGADLV  194 (366)
T ss_dssp             CHHHHHTTCC------TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHHHHTCSEE
T ss_pred             CHHHHHHhcC------CCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccc-cCCCHhhcCceEE
Confidence            5677777665      47999999877665 5567888855 58999999999999864331   0 0111124579999


Q ss_pred             EEcccccCCCCCCceEEEEEeCCCCcCcC
Q 007454          301 ICSFYQIFGENPSGFGCLFVKKSTVPILV  329 (603)
Q Consensus       301 v~S~hK~fG~~P~G~G~L~vkk~~~~~L~  329 (603)
                      ++|++|.+|+ | +.|.++.++++++.+.
T Consensus       195 ~~S~sK~~~g-~-~~G~i~~~~~~i~~~~  221 (366)
T d2aeua1         195 VTSTDKLMEG-P-RGGLLAGKKELVDKIY  221 (366)
T ss_dssp             EEETTSSSSS-C-SCEEEEEEHHHHHHHH
T ss_pred             Eecccccccc-c-ceeEEEecHHHHHHHH
Confidence            9999999984 4 7899999988765554

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=9.4e-09  Score=109.42  Aligned_cols=113  Identities=17%  Similarity=0.166  Sum_probs=73.2

Q ss_pred             HcCCEEEEEeccC---------CccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHHHH----HHHHhCCc
Q 007454          208 KRGARVMSAEFSW---------PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYLWM----RIAQENDW  273 (603)
Q Consensus       208 ~~Ga~V~~~~~~~---------~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~~i----~~a~e~g~  273 (603)
                      ..|+++..++.+.         ..+.++.++|++.|..+.+  ..+.++++....|..| ..+|+..+    ++|+++|+
T Consensus       141 ~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~  218 (467)
T d2v1pa1         141 INGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP--NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDI  218 (467)
T ss_dssp             HTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG--GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTC
T ss_pred             HcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCc--cccceeeecceeeccccccCCHHHHHHHHHHHHHcCC
Confidence            3477777665431         2467899999999985322  3567788777766654 56666533    36899999


Q ss_pred             EEEEeccccCCCC---------CCCCCCC------CCCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          274 HILIDACALGPKD---------MDSFGLS------LVRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       274 ~vlvDAaq~~~~~---------m~~ldls------~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      ++++|+|++++..         ....++.      -..+|.+++|.||.++. | +-|++..+++.
T Consensus       219 ~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~-~-~gg~i~~~~~~  282 (467)
T d2v1pa1         219 PVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV-P-MGGLLCMKDDS  282 (467)
T ss_dssp             CEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC-S-SCEEEEECSGG
T ss_pred             EEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCC-C-CceeEEecchh
Confidence            9999999865310         0001110      12489999999998875 4 34666666544

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.69  E-value=3.2e-07  Score=95.38  Aligned_cols=116  Identities=12%  Similarity=0.112  Sum_probs=76.9

Q ss_pred             HHHHHcCCEEEEEeccCCc-cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEe
Q 007454          204 RTSEKRGARVMSAEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILID  278 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~-g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvD  278 (603)
                      ..++..|+++..++.+..+ ..++.++|++.+.      +.++++.++.-+|.||..++-+.+    ..|++++++|+.|
T Consensus       140 ~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~------~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~D  213 (412)
T d1bw0a_         140 TVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD------DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD  213 (412)
T ss_dssp             HHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhhhccCccccccccccccccchhhHHHHhhhh------ccccccccccccccccccchhhhccccccccccCCeeeech
Confidence            4456678888888876322 3568888887765      368999999999999999998733    4578999999999


Q ss_pred             cccc-C---CCCCCC-----CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          279 ACAL-G---PKDMDS-----FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       279 Aaq~-~---~~~m~~-----ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      .+-. .   +....+     .++.....=+++.|+-|.||.+---+|.+++.+...
T Consensus       214 e~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~  269 (412)
T d1bw0a_         214 EIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWRLGWLLYVDPHG  269 (412)
T ss_dssp             CTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGCCEEEEEECTTC
T ss_pred             hhHHHhccCCCCCccccccccccccccccccccccCccCccCCCCcccccccchhh
Confidence            8621 1   110001     111111223566788998885322389888876553

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.9e-07  Score=96.16  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=64.2

Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccC----CCCCCC-CCCCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALG----PKDMDS-FGLSL  294 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~----~~~m~~-ldls~  294 (603)
                      .++..++.....      +.++++.++.-+|.||..++.+.+    ++|++++++|+.|.+-.-    +....+ ..+..
T Consensus       158 ~~d~~~~~~~~~------~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~  231 (418)
T d1w7la_         158 QLDPMELAGKFT------SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPG  231 (418)
T ss_dssp             ECCHHHHHHHCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTT
T ss_pred             ccchhhhhcccc------ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccc
Confidence            355555555443      478999999999999999998633    357899999999986311    210011 12222


Q ss_pred             C-CCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          295 V-RPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       295 ~-~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      . .--+++.|+-|.|+.|--.+|.++..++++.
T Consensus       232 ~~~~~i~~~S~SK~~~~pG~RvG~~v~~~~~~~  264 (418)
T d1w7la_         232 MWERTLTIGSAGKTFSATGWKVGWVLGPDHIMK  264 (418)
T ss_dssp             TGGGEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred             cccccceecccCccccCCCCcccccccchhhhh
Confidence            2 2357899999988853244888887665543

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=3.6e-07  Score=93.63  Aligned_cols=268  Identities=16%  Similarity=0.193  Sum_probs=151.0

Q ss_pred             HHHHHHHHHcC------CCCCcEEEeccC-chHHHHHHHHHHcCCEEEEEeccCC----------------------ccc
Q 007454          174 AMKKRIMDFLN------ISENDYVYDYES-EAVEAMIRTSEKRGARVMSAEFSWP----------------------RLR  224 (603)
Q Consensus       174 ~aR~~Ia~~ln------a~~~e~vf~~es-~sV~~~~~~a~~~Ga~V~~~~~~~~----------------------~g~  224 (603)
                      +.|+.|+++++      .++++++.+... +++..+....-+.|.+|......|+                      ...
T Consensus        69 ~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (375)
T d1o4sa_          69 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQ  148 (375)
T ss_dssp             HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTC
T ss_pred             HHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhcccccccccccccccccc
Confidence            56666666553      567788776433 2333333333344544443332221                      123


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccccCCC-CCCCCC----CCCC
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACALGPK-DMDSFG----LSLV  295 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~~~~-~m~~ld----ls~~  295 (603)
                      ++.+.++....      ++++++.++.-+|.||..++.+.+    ..|++++++|+.|.+-..-. +-.+..    ....
T Consensus       149 ~~~~~~~~~~~------~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~  222 (375)
T d1o4sa_         149 PSLEEVEGLLV------GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGF  222 (375)
T ss_dssp             CCHHHHHHTCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSS
T ss_pred             chhHHHHHhhc------cCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCC
Confidence            45555554433      468899999999999999998744    35799999999998522211 000111    1223


Q ss_pred             CCcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          296 RPDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       296 ~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      +-=+++.|+=|.||.+---+|.++..+..+..+....                                     ...+.+
T Consensus       223 ~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~~~~~~~-------------------------------------~~~~~~  265 (375)
T d1o4sa_         223 DRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQ-------------------------------------SHTTSC  265 (375)
T ss_dssp             TTEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHH-------------------------------------HHHTCS
T ss_pred             CCEEEEeechhhccCCccccccccccccchhhhhhhh-------------------------------------cccccc
Confidence            4558889999998842122676665544322111000                                     000000


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                      ...+...                                         .+....+ .......++.+.-.+++.+.|.++
T Consensus       266 ~~~~~~~-----------------------------------------~~~~~~~-~~~~~~~~~~~~r~~~~~~~l~~~  303 (375)
T d1o4sa_         266 INTVAQY-----------------------------------------AALKALE-VDNSYMVQTFKERKNFVVERLKKM  303 (375)
T ss_dssp             CCHHHHH-----------------------------------------HHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchh-----------------------------------------hhhhhcc-cchhhhHHHHHHHHHHHHHHHHhc
Confidence            0001000                                         1111111 123444555566667777778764


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                            |   ++++.|    +-+..+-+.+++.     +.+.+.+|+.++||.++-|..|.                   
T Consensus       304 ------g---~~~~~p----~gg~f~~~~~~~~-----~~~~~~~ll~~~gV~v~pG~~F~-------------------  346 (375)
T d1o4sa_         304 ------G---VKFVEP----EGAFYLFFKVRGD-----DVKFCERLLEEKKVALVPGSAFL-------------------  346 (375)
T ss_dssp             ------T---CCCCCC----SBSSEEEEECSSC-----HHHHHHHHHHHHCEECEEGGGGT-------------------
T ss_pred             ------C---ceEecC----CccEEEEEECCCC-----HHHHHHHHHHhCCEEEEEccccC-------------------
Confidence                  2   333333    2344566666542     34568888988999999885541                   


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                       ..|.+|+|++  ++.|++.+.++.|++||+
T Consensus       347 -----------------~~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         347 -----------------KPGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             -----------------CTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence                             0258999997  589999999999999986

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=98.64  E-value=2.2e-06  Score=89.15  Aligned_cols=118  Identities=11%  Similarity=0.116  Sum_probs=86.6

Q ss_pred             HHHHHHcCCCCCcEEEecc-CchH-HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccc
Q 007454          177 KRIMDFLNISENDYVYDYE-SEAV-EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR  254 (603)
Q Consensus       177 ~~Ia~~lna~~~e~vf~~e-s~sV-~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn  254 (603)
                      ..++.++..- ++++.... .... ..+...+.+.|.++..++..      +.+.+++.|+      ++|+||-+-.-+|
T Consensus        93 ~~l~~ll~~G-d~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~------d~~~~~~~i~------~~Tklv~~Esp~N  159 (397)
T d1y4ia1          93 TTLLTLCQQG-DHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG------KPEEIRAAMR------PETKVVYIETPAN  159 (397)
T ss_dssp             HHHHHHCCTT-CEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT------SHHHHHHHCC------TTEEEEEEESSCT
T ss_pred             HHHhhccCCC-CeeeeecccccccchhhhcccCCCceEeeccCCC------CHHHHHHhcC------CCCcEEEecCCcc
Confidence            3455665532 34544322 1122 23345677889999998753      4788888886      3799999999999


Q ss_pred             cccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCC
Q 007454          255 MTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       255 ~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~  310 (603)
                      .+..+.|++.| ++||++|+.++||.+-..|-...|++   +++|.++-|.-|.+|+
T Consensus       160 P~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~---~GaDivihS~TKyi~G  213 (397)
T d1y4ia1         160 PTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ---LGADIVVHSVTKYING  213 (397)
T ss_dssp             TTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG---GTCSEEEEETTTTTTC
T ss_pred             cceeecccHHHHHHhhcCCceEEecCcccCcccCcchh---cCCCEEEEehhhhcCC
Confidence            99999999955 58999999999999866665334553   5899999999998763

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=98.60  E-value=2.7e-07  Score=98.10  Aligned_cols=98  Identities=15%  Similarity=0.132  Sum_probs=66.6

Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccccc-ccccHHH---H-HHHHhCCcEEEEeccccCCCC----C-----
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTG-ARYPYLW---M-RIAQENDWHILIDACALGPKD----M-----  287 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG-~~~pl~~---i-~~a~e~g~~vlvDAaq~~~~~----m-----  287 (603)
                      .+.+|.++|++.|..+.  +..+.++++...+|..| ..+|++.   | ++|+++|+.+++|++++++..    .     
T Consensus       155 ~~~~d~~~le~~I~~~~--~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~  232 (456)
T d1c7ga_         155 KGDIDLNKLATLIKEKG--AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGY  232 (456)
T ss_dssp             TTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTC
T ss_pred             cccCCHHHHHHHhhhcC--CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhccccccc
Confidence            46789999999998642  23577888888877765 5666653   3 478999999999999865310    0     


Q ss_pred             CCCCCCC------CCCcEEEEcccccCCCCCCceEEEEEeCC
Q 007454          288 DSFGLSL------VRPDFLICSFYQIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       288 ~~ldls~------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~  323 (603)
                      ...++..      -.+|.+++|+||.+|. |.| |+++.++.
T Consensus       233 ~~~~i~~i~~~~~~~ad~~s~s~~K~~~~-~~G-G~i~~~~~  272 (456)
T d1c7ga_         233 ENVSIKDIVHEMFSYADGCTMSGKKDCLV-NIG-GFLCMNDE  272 (456)
T ss_dssp             TTSCHHHHHHHHHTTCSEEEEETTTTTCC-SSC-EEEEESCH
T ss_pred             CCCChhhhccccccccccEEEeccccccc-cce-eEEEcCCH
Confidence            0111110      1379999999999885 444 66665543

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=98.56  E-value=5.9e-07  Score=92.93  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             HHHHHHHHHc----C--CCCCcEEEeccCc-hHHHHHH---------------------HHHHcCCEEEEEeccC--Ccc
Q 007454          174 AMKKRIMDFL----N--ISENDYVYDYESE-AVEAMIR---------------------TSEKRGARVMSAEFSW--PRL  223 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~e~vf~~es~-sV~~~~~---------------------~a~~~Ga~V~~~~~~~--~~g  223 (603)
                      +.|+.|++++    |  +++++++.+..+. ++.....                     ..+..|.+.+.++...  ...
T Consensus        70 ~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~  149 (394)
T d1c7na_          70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYY  149 (394)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEE
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccc
Confidence            4577777765    3  5788887765432 2222222                     2333455555444321  123


Q ss_pred             ccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc--C--CCCCCC---CCC
Q 007454          224 RINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL--G--PKDMDS---FGL  292 (603)
Q Consensus       224 ~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~--~--~~~m~~---ldl  292 (603)
                      .++.+.++.++..     ++++++.++.-+|.||.+++.+.+    .+|++++++|++|-+-.  .  +..-.+   ...
T Consensus       150 ~~d~~~~~~~~~~-----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~  224 (394)
T d1c7na_         150 TIDFQKLEKLSKD-----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDE  224 (394)
T ss_dssp             ECCHHHHHHHHTC-----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCH
T ss_pred             cchhhhhhhhhcc-----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhc
Confidence            4677888777753     478999999999999999998643    46789999999997621  1  110001   111


Q ss_pred             CCCCCcEEEEcccccCCCCCCceEEEEEeC
Q 007454          293 SLVRPDFLICSFYQIFGENPSGFGCLFVKK  322 (603)
Q Consensus       293 s~~~~Dflv~S~hK~fG~~P~G~G~L~vkk  322 (603)
                      .....-+++.|+=|.||.+.-.+|.+++..
T Consensus       225 ~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~  254 (394)
T d1c7na_         225 QLADKTITFTAPSKTFNIAGMGMSNIIIKN  254 (394)
T ss_dssp             HHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred             ccccceeecccccccccccccccccccccC
Confidence            112345778899999885322344454443

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=98.56  E-value=1.8e-06  Score=89.89  Aligned_cols=115  Identities=9%  Similarity=0.020  Sum_probs=72.6

Q ss_pred             HHHHcCCEEEEEeccCC---------ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhC
Q 007454          205 TSEKRGARVMSAEFSWP---------RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQEN  271 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~---------~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~  271 (603)
                      .++..|.+++.++++-.         ...++.+++.+...      .++++++++.-+|.||..++-+.+    .+|+++
T Consensus       130 ~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~  203 (418)
T d2r5ea1         130 MVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN------EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW  203 (418)
T ss_dssp             HHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh------ccccceecCCcCccccccccHHHHHHHhhhhhcC
Confidence            34456777777766411         12356666666543      478999999999999999998633    358899


Q ss_pred             CcEEEEeccccC----CCCCCCC-CCCC-CCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          272 DWHILIDACALG----PKDMDSF-GLSL-VRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       272 g~~vlvDAaq~~----~~~m~~l-dls~-~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +++++.|.+-..    +..+.++ .+.. ...-.++.|+=|.||.+---+|.++..+..+
T Consensus       204 ~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~i  263 (418)
T d2r5ea1         204 NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALL  263 (418)
T ss_dssp             TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEESCHHHH
T ss_pred             CeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCcccccccccchhh
Confidence            999999986422    2110111 1111 1223667799999885312378877665543

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=98.55  E-value=6.6e-07  Score=94.52  Aligned_cols=99  Identities=12%  Similarity=0.090  Sum_probs=67.4

Q ss_pred             ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccc-cccHHH---H-HHHHhCCcEEEEeccccCCCC-------CCC
Q 007454          222 RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGA-RYPYLW---M-RIAQENDWHILIDACALGPKD-------MDS  289 (603)
Q Consensus       222 ~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~-~~pl~~---i-~~a~e~g~~vlvDAaq~~~~~-------m~~  289 (603)
                      .+.++.++|+++|....  +..+.++.++..+|..|. .+|.+.   | ++|+++|+++++|+++..+.-       ...
T Consensus       163 ~~~~d~~~l~~~i~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~~  240 (465)
T d1ax4a_         163 KGDFDIKKLKENIAQHG--ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY  240 (465)
T ss_dssp             TTCBCHHHHHHHHHHHC--GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGG
T ss_pred             cCccCHHHHHHHHHhhc--cccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccccc
Confidence            56789999999998532  135677777777776654 456653   3 368999999999999874310       001


Q ss_pred             CCCCC--------CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          290 FGLSL--------VRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       290 ldls~--------~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      .+.+.        ...|.+++|+||.+|.  .|.|+++.++..
T Consensus       241 ~~~~~~~i~~~~~~~~d~~s~s~~k~~~~--~~~g~l~~~~~~  281 (465)
T d1ax4a_         241 KNATIKEVIFDMYKYADALTMSAKKDPLL--NIGGLVAIRDNE  281 (465)
T ss_dssp             TTCCHHHHHHHHGGGCSEEEEETTSTTCC--SSCEEEEESSCH
T ss_pred             cccchhhhccccccccceeEeecccCccc--ccceeEeecchH
Confidence            11110        1269999999998884  366999888753

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.9e-06  Score=87.16  Aligned_cols=113  Identities=8%  Similarity=0.068  Sum_probs=74.3

Q ss_pred             HHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHH----HHHhCCcEEEEeccc
Q 007454          206 SEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMR----IAQENDWHILIDACA  281 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~----~a~e~g~~vlvDAaq  281 (603)
                      +...|+++...+.+.....++.++|++.+..      +++++.++--+|.||++++.+.+.    .+.++++.++.|..-
T Consensus       128 ~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~------~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~  201 (382)
T d1u08a_         128 IALSGGIVKRMALQPPHFRVDWQEFAALLSE------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVY  201 (382)
T ss_dssp             HHHTTCEEEEEECCTTTCCCCHHHHHHHCCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTT
T ss_pred             hhhccccceecccccccccCCHHHHhhhhcc------CccEEEECCCCcccccccccccchhhhhhhccccceeeeecch
Confidence            4456777777776655667788898887653      688999999999999999987443    467789999988753


Q ss_pred             cCC-C-CCCCCCCCC----CCCcEEEEcccccCCCCCCceEEEEEeCCC
Q 007454          282 LGP-K-DMDSFGLSL----VRPDFLICSFYQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       282 ~~~-~-~m~~ldls~----~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~  324 (603)
                      ..- . ...+.....    ..--.++.|+=|.|+.+--.+|.++..+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~  250 (382)
T d1u08a_         202 EHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI  250 (382)
T ss_dssp             TTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHH
T ss_pred             hhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchh
Confidence            211 1 001111111    112378999999998532347877765544

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.2e-06  Score=86.58  Aligned_cols=217  Identities=12%  Similarity=0.165  Sum_probs=135.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.++|++.+..     ++..-|.+--+....|.+.|    ++.+. +|+++|+++++|=+|.+ +..  |-....-...|
T Consensus       176 d~~~l~~~l~~-----~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~P  250 (404)
T d2byla1         176 DLPALERALQD-----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP  250 (404)
T ss_dssp             CHHHHHHHHTS-----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred             CHHHHHHhcCC-----CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCC
Confidence            67788888864     35555555334445788777    55554 79999999999988764 331  11122223469


Q ss_pred             cEEEEcccccC-CC-CCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCC
Q 007454          298 DFLICSFYQIF-GE-NPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNT  375 (603)
Q Consensus       298 Dflv~S~hK~f-G~-~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n  375 (603)
                      |+++++  |-+ |+ .|  +|++++++++++.+.+...+++          +                       .|  |
T Consensus       251 Di~~~g--K~l~gG~~p--~~av~~~~~i~~~~~~~~~~~T----------~-----------------------~g--n  291 (404)
T d2byla1         251 DIVLLG--KALSGGLYP--VSAVLCDDDIMLTIKPGEHFST----------Y-----------------------GG--N  291 (404)
T ss_dssp             SEEEEC--GGGGTTSSC--CEEEEECHHHHTTSCTTSSCCS----------S-----------------------TT--C
T ss_pred             CEEEEC--chhhCCCcc--ceeeeechhhhhccCCCCCCcC----------C-----------------------Cc--C
Confidence            988664  643 32 23  7999999888766654332222          0                       00  1


Q ss_pred             hhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC
Q 007454          376 FSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKL  455 (603)
Q Consensus       376 ~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L  455 (603)
                         +++.+            +++                         +.|+.+++   +.+.++++.+.++|.++|.+|
T Consensus       292 ---pl~~a------------aa~-------------------------a~L~~i~~---~~l~~~~~~~g~~l~~~l~~l  328 (404)
T d2byla1         292 ---PLGCR------------VAI-------------------------AALEVLEE---ENLAENADKLGIILRNELMKL  328 (404)
T ss_dssp             ---HHHHH------------HHH-------------------------HHHHHHHH---TTHHHHHHHHHHHHHHHHHTS
T ss_pred             ---HHHHH------------HHH-------------------------HHHHHHHh---cCchhhhhHhhHHHHHHHHhh
Confidence               12221            011                         46777665   345667888899999999998


Q ss_pred             CCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhh
Q 007454          456 QHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTD  535 (603)
Q Consensus       456 ~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~  535 (603)
                      +++.   +--|+-        +|.+.++.+.+.++.. ...+++++. ++||.++..                       
T Consensus       329 ~~~~---i~~vRg--------~Gl~~~i~~~~~~~~~-~~~~~~~l~-~~Gvl~~~~-----------------------  372 (404)
T d2byla1         329 PSDV---VTAVRG--------KGLLNAIVIKETKDWD-AWKVCLRLR-DNGLLAKPT-----------------------  372 (404)
T ss_dssp             CTTT---EEEEEE--------ETTEEEEEECCCSSCC-HHHHHHHHH-HTTEECEEE-----------------------
T ss_pred             cccc---ceeeee--------cccEEEEEEecCCchh-HHHHHHHHH-hCCeEEecC-----------------------
Confidence            7532   111222        4568888887765443 233444444 567765310                       


Q ss_pred             cccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 007454          536 REAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLD  582 (603)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~  582 (603)
                                       ...+||+++.+-.|.+|||++++.|.+.|.
T Consensus       373 -----------------~~~~i~l~PpL~it~~~id~~~~~l~~al~  402 (404)
T d2byla1         373 -----------------HGDIIRFAPPLVIKEDELRESIEIINKTIL  402 (404)
T ss_dssp             -----------------ETTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence                             114899999999999999999999998775

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=4.3e-05  Score=81.01  Aligned_cols=259  Identities=12%  Similarity=0.020  Sum_probs=146.1

Q ss_pred             HcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccc-cHHHH-HHHHhCCcEEEEeccccCCC
Q 007454          208 KRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARY-PYLWM-RIAQENDWHILIDACALGPK  285 (603)
Q Consensus       208 ~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~-pl~~i-~~a~e~g~~vlvDAaq~~~~  285 (603)
                      ..+.++..++.+ ..+.++.+.+...+..      ++..+++...++ .|..- ..+.+ .++|++|..+++|++....-
T Consensus       174 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~a~v~v~~p~~-~g~~e~~~~~~~~~~h~~g~~~~~~~~~~~~~  245 (471)
T d1wyub1         174 MAGYQVREIPSG-PEGEVDLEALKRELGP------HVAALMLTNPNT-LGLFERRILEISRLCKEAGVQLYYDGANLNAI  245 (471)
T ss_dssp             HTTCEEEEECBC-TTSSBCHHHHHHHCST------TEEEEEECSSCT-TSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGT
T ss_pred             cccceeeccccc-ccccccchhhhhhhhc------cccceeeccCCC-cccccchhhhhHHHHHhccccccccccchhhh
Confidence            345566666655 4677788887776643      566666665554 55544 46644 57899999999998644332


Q ss_pred             CCCCCCCCCCCCcEEEEcccccCCCCC-----CceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcc
Q 007454          286 DMDSFGLSLVRPDFLICSFYQIFGENP-----SGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPE  360 (603)
Q Consensus       286 ~m~~ldls~~~~Dflv~S~hK~fG~~P-----~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~  360 (603)
                      - ..+.-...+.|.+++.-|+.||- |     .|+|++-+|+.....+.-...|++....   ...+ .++         
T Consensus       246 ~-~l~~p~~~g~div~vg~~q~~G~-P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~---~~~~-~RE---------  310 (471)
T d1wyub1         246 M-GWARPGDMGFDVVHLNLHKTFTV-PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGF---YLDF-DRP---------  310 (471)
T ss_dssp             T-TTCCHHHHTCSEEECCTTTTTCC-CCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCE---EEEC-CCT---------
T ss_pred             h-hccccCccccccccccccccccc-ccccccccccceeehhhhhccCCCceecCCCccc---cccC-CCc---------
Confidence            0 11222346789999999995532 2     2788899999887666544444111000   0000 011         


Q ss_pred             cCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHH
Q 007454          361 QTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRR  440 (603)
Q Consensus       361 ~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r  440 (603)
                      ++ -++  ....|.+....+..+                                        .-+.++=.-||..+.++
T Consensus       311 qh-IrR--e~actnqaL~al~A~----------------------------------------vYlsllG~~GL~elA~~  347 (471)
T d1wyub1         311 KS-IGR--VRSFYGNFLALVRAW----------------------------------------AYIRTLGLEGLKKAAAL  347 (471)
T ss_dssp             TC-CCC--SSSTTSCHHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred             cc-ccc--hhhhhhhHHHHHHHH----------------------------------------HHHHHhCchhHHHHHHH
Confidence            01 122  234555443222111                                        12222323389999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCC
Q 007454          441 GRCLINWLVNALMKLQHPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFS  520 (603)
Q Consensus       441 ~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~  520 (603)
                      ....++||.++|+..      |   +++.-+     ..-.--|.+...+|  +....|.+.+-.+||.-.+..       
T Consensus       348 ~~~~A~Yla~~L~~~------G---~~~~~~-----~~ff~EFvv~~~~~--~~~~~i~k~L~~~G~~~~~~~-------  404 (471)
T d1wyub1         348 AVLNARYLKELLKEK------G---YRVPYD-----GPSMHEFVAQPPEG--FRALDLAKGLLELGFHPPTVY-------  404 (471)
T ss_dssp             HHHHHHHHHHHHHHT------T---CBCSSC-----SSCCSCEEEBCSTT--CCHHHHHHHHHHTTCCCCEES-------
T ss_pred             HHHHHHHHHHHHhhc------C---ceeccC-----cceeeEEeecCCCC--CCHHHHHHHHHHcCCCCCccc-------
Confidence            999999999999753      3   222211     11111244444333  445555553334677432110       


Q ss_pred             chhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          521 DKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       521 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                        +                          .....+.+-+..-=.+|.||||+|+++|++++++
T Consensus       405 --~--------------------------p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e  439 (471)
T d1wyub1         405 --F--------------------------PLIVKEALMVEPTETEAKETLEAFAEAMGALLKK  439 (471)
T ss_dssp             --C--------------------------STTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred             --C--------------------------cCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence              0                          1112246667777789999999999999999876

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=98.43  E-value=6e-06  Score=85.84  Aligned_cols=108  Identities=12%  Similarity=0.034  Sum_probs=80.0

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHH-HHHHH-HhCCcEEEEec
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYL-WMRIA-QENDWHILIDA  279 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~-~i~~a-~e~g~~vlvDA  279 (603)
                      +.....+.|.++.+++..      +.+++++.|.      ++|+++-+-.-+|.+..+.|++ .++.+ +++|+.|+||.
T Consensus       115 ~~~~~~~~gi~~~~~d~~------d~~~~~~~i~------~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDn  182 (394)
T d1e5ea_         115 FEHALTKFGIQVDFINTA------IPGEVKKHMK------PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN  182 (394)
T ss_dssp             HHTHHHHTTCEEEEECTT------STTHHHHHCC------TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEEC
T ss_pred             HHHHhhccceeeeccCCC------CHHHHHHhhc------ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecC
Confidence            345677899999998764      3467788876      3799999999999999999998 55655 56799999998


Q ss_pred             cccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc-eEEEEEeCCC
Q 007454          280 CALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG-FGCLFVKKST  324 (603)
Q Consensus       280 aq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~L~vkk~~  324 (603)
                      +-..|-...|+   ++++|.++-|.=|++++.--- .|++.++++.
T Consensus       183 T~atP~~~~Pl---~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~  225 (394)
T d1e5ea_         183 TFCSPMITNPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADL  225 (394)
T ss_dssp             TTTCTTTCCGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred             cccCcccCCch---hcCCCEEEechhhhcCCCcccccccccchhhH
Confidence            86666533455   468999999999988742111 4555555443

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=1.2e-05  Score=83.13  Aligned_cols=212  Identities=17%  Similarity=0.207  Sum_probs=127.0

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCCCCCCCC---CCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKDMDSFGL---SLVR  296 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~m~~ldl---s~~~  296 (603)
                      +.+.|++.+.+      +..-|.+=-+....|.+.|    ++.+. +|+++|+.+++|=+|.+ |.. ...-.   -...
T Consensus       166 d~~~l~~~~~~------~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~-G~~~~~~~~~v~  238 (387)
T d1vefa1         166 DVEALKRAVDE------ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRT-GKRFAFEHFGIV  238 (387)
T ss_dssp             CHHHHHHHCCT------TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSSSTHHHHTCC
T ss_pred             CHHHHHHhcCC------CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCcc-CCCcccccCCcC
Confidence            56778877753      4544444334445788777    55554 78999999999988764 331 11111   1356


Q ss_pred             CcEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCCh
Q 007454          297 PDFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTF  376 (603)
Q Consensus       297 ~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~  376 (603)
                      ||+++++--=--|+ |  +|+...+++.+..+.+...|+|          |                       .|  | 
T Consensus       239 PDi~~~gK~l~gG~-~--~~~~~~~~~~~~~~~~~~~g~T----------~-----------------------~g--n-  279 (387)
T d1vefa1         239 PDILTLAKALGGGV-P--LGVAVMREEVARSMPKGGHGTT----------F-----------------------GG--N-  279 (387)
T ss_dssp             CSEEEECGGGGTTS-S--CEEEEEEHHHHHTSCTTSSCCS----------S-----------------------TT--C-
T ss_pred             CceeeecccCCCCc-c--ccccccceeeeeccccCCcccc----------C-----------------------CC--C-
Confidence            99999872211244 4  4677777776655554333322          0                       00  1 


Q ss_pred             hhhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC
Q 007454          377 SGPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ  456 (603)
Q Consensus       377 ~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~  456 (603)
                        +++++            +++                         +.|+.+.+   +.+.++++.+.++|.++|.++.
T Consensus       280 --Pla~a------------aa~-------------------------a~L~~l~~---~~~~~~v~~~g~~l~~~L~~l~  317 (387)
T d1vefa1         280 --PLAMA------------AGV-------------------------AAIRYLER---TRLWERAAELGPWFMEKLRAIP  317 (387)
T ss_dssp             --HHHHH------------HHH-------------------------HHHHHHHH---HTTHHHHHHHHHHHHHHHHTSC
T ss_pred             --cchhh------------hcc-------------------------cchhhccc---ccccchHhhhhHHHHHHHHhcC
Confidence              22222            011                         35666544   4556778888899999999987


Q ss_pred             CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          457 HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       457 h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                      ++.   +.-|+-        +|.+.+|.+.+..+     ..+.+++..+|+.+..                         
T Consensus       318 ~~~---v~~vrg--------~Gl~~~ie~~~~~~-----~~~~~~~~~~g~l~~~-------------------------  356 (387)
T d1vefa1         318 SPK---IREVRG--------MGLMVGLELKEKAA-----PYIARLEKEHRVLALQ-------------------------  356 (387)
T ss_dssp             CTT---EEEEEE--------ETTEEEEEESSCSH-----HHHHHHHHHHCEECEE-------------------------
T ss_pred             CCc---eEEEee--------cceEEEEEEeCCch-----HHHHHHHHHCCCeEEe-------------------------
Confidence            643   111222        35678888865432     2344444444543210                         


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                                     .+..+||+++.+-.|.+|||++++.|++.|
T Consensus       357 ---------------~g~~~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         357 ---------------AGPTVIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             ---------------SSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             ---------------cCCCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence                           112489999999999999999999998876

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=2.1e-06  Score=88.07  Aligned_cols=141  Identities=14%  Similarity=0.158  Sum_probs=81.7

Q ss_pred             HHHHHHHHHc----C--CCCCcEEEeccC-chHHHHHHHH---------------------HHcCCEEEEEeccCCcccc
Q 007454          174 AMKKRIMDFL----N--ISENDYVYDYES-EAVEAMIRTS---------------------EKRGARVMSAEFSWPRLRI  225 (603)
Q Consensus       174 ~aR~~Ia~~l----n--a~~~e~vf~~es-~sV~~~~~~a---------------------~~~Ga~V~~~~~~~~~g~i  225 (603)
                      +.|+.|++++    |  +++++++.+..+ +++..+....                     +..|+++..++.+......
T Consensus        68 ~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (389)
T d2gb3a1          68 ELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFA  147 (389)
T ss_dssp             HHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCccccccccccccccc
Confidence            5677777665    3  467888766432 2333333333                     3345555555544322222


Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecccc-CCCC--CCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACAL-GPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq~-~~~~--m~~ldls~~~~D  298 (603)
                      ..+.+...+      .++++++.++--+|.||..++.+.+    ++|++++++++.|-+-. ...+  +.+.-.....-.
T Consensus       148 ~~~~~~~~~------~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~  221 (389)
T d2gb3a1         148 IPQNLESFI------NERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKV  221 (389)
T ss_dssp             CCTTGGGGC------CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTE
T ss_pred             hhhhhhhhc------ccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccc
Confidence            222222222      3478999999999999999997633    46899999999997531 1110  011111122345


Q ss_pred             EEEEcccccCCCCCCc--eEEEEEeC
Q 007454          299 FLICSFYQIFGENPSG--FGCLFVKK  322 (603)
Q Consensus       299 flv~S~hK~fG~~P~G--~G~L~vkk  322 (603)
                      +++.|+-|.++. | |  +|.++..+
T Consensus       222 ~v~~s~sK~~~~-~-GlRiG~~~~~~  245 (389)
T d2gb3a1         222 VVIDSVSKKFSA-C-GARVGCLITRN  245 (389)
T ss_dssp             EEEEESTTTTTC-G-GGCCEEEECSC
T ss_pred             cccccccccccC-c-ccceeeeeccc
Confidence            778888898875 2 6  67766544

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=4.4e-05  Score=79.95  Aligned_cols=223  Identities=12%  Similarity=0.111  Sum_probs=131.7

Q ss_pred             HHHHHHHHhhcCCCCCCe-eEEEEeCccccccccc-cH---HHH-HHHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          227 SEKLRKMVVSKGKKKKQR-GLFVFPLHSRMTGARY-PY---LWM-RIAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       227 ~~~L~~~l~~~~~~~~~t-~Lv~~~~~Sn~TG~~~-pl---~~i-~~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      .+++++.+...   ..+. .+++-|.+.+.-|.+. |-   +.+ ++|+++|+.+++|=+|.+ |..  |-....-...|
T Consensus       191 ~~~~~~~~~~~---~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~P  267 (429)
T d1s0aa_         191 MVGFARLMAAH---RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAP  267 (429)
T ss_dssp             GHHHHHHHHHH---TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred             hhhhhhhhhhc---CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecc
Confidence            44555544431   1234 5566667777777754 43   334 368999999999988775 221  11122223579


Q ss_pred             cEEEEcccccCCCCCCceEEEEEeCCCCcCcCCCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChh
Q 007454          298 DFLICSFYQIFGENPSGFGCLFVKKSTVPILVDNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFS  377 (603)
Q Consensus       298 Dflv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~  377 (603)
                      |+++++--=--|+.|  +|++.+++++++.+.+... |..                               .-.+|..- 
T Consensus       268 Di~~~gK~l~gG~~p--~~av~~~~~i~~~~~~~~~-~~~-------------------------------~~~~T~~g-  312 (429)
T d1s0aa_         268 DILCLGKALTGGTMT--LSATLTTREVAETISNGEA-GCF-------------------------------MHGPTFMG-  312 (429)
T ss_dssp             SEEEECGGGGTSSSC--CEEEEECHHHHHHHHTSTT-SSC-------------------------------SCCCTTTT-
T ss_pred             ccccccccccccccc--ccchhhHHHHHhccCCCCC-cce-------------------------------eecCCCCC-
Confidence            999986322234223  7999999887654432110 100                               00122111 


Q ss_pred             hhhhhhhhhcCccccchhHHHhhhhhhhhhhhccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCC
Q 007454          378 GPMSIEMRQSGKLEQGEISEVRRAEADSIQQKNANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQH  457 (603)
Q Consensus       378 gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h  457 (603)
                      .++++++            ++                         +.|+.+++   +.+..+++.+.++|.++|.+|..
T Consensus       313 np~~~aa------------a~-------------------------a~L~~i~~---~~~~~~~~~~g~~l~~~L~~l~~  352 (429)
T d1s0aa_         313 NPLACAA------------AN-------------------------ASLAILES---GDWQQQVADIEVQLREQLAPARD  352 (429)
T ss_dssp             CHHHHHH------------HH-------------------------HHHHHHHT---CHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             Ccccchh------------hh-------------------------cccccccc---ccccchhhHHHHHHHHHHHHhcc
Confidence            1222220            11                         46666654   46677888999999999988752


Q ss_pred             CCCCCCceEE-EeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhc
Q 007454          458 PNTEGNALVK-IYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDR  536 (603)
Q Consensus       458 ~~~~g~plv~-Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~  536 (603)
                           .+.|. |-      -+|.+++|.+....    ....+.+.+-++|+.++.                         
T Consensus       353 -----~~~v~~vr------g~Gl~~~~e~~~~~----~~~~~~~~~~~~Gl~~~~-------------------------  392 (429)
T d1s0aa_         353 -----AEMVADVR------VLGAIGVVETTHPV----NMAALQKFFVEQGVWIRP-------------------------  392 (429)
T ss_dssp             -----CTTEEEEE------EETTEEEEEESSCB----CHHHHHHHHHHTTEECCC-------------------------
T ss_pred             -----CCceEEEe------ecccEEEEEecCcc----cHHHHHHHHHHCCcEEEe-------------------------
Confidence                 12231 22      24668888876543    234455555566776531                         


Q ss_pred             ccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q 007454          537 EAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFLDA  583 (603)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l~~  583 (603)
                                     . ..+||+++.+-.|.+|||++++.|.+.|.+
T Consensus       393 ---------------~-g~~i~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         393 ---------------F-GKLIYLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             ---------------B-TTEEEECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             ---------------c-CCEEEEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence                           1 138999999999999999999999988765

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=1.8e-06  Score=89.40  Aligned_cols=104  Identities=13%  Similarity=0.141  Sum_probs=79.0

Q ss_pred             HHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecccc
Q 007454          204 RTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACAL  282 (603)
Q Consensus       204 ~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq~  282 (603)
                      ....+.|.++.++...      +.++++++|.      ++|++|-+=.-+|.+..+.|++.+ ++||++|+.++||.+-+
T Consensus       106 ~~~~~~gi~~~~~d~~------~~~~~~~ai~------~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         106 QVVPRSGVVVKRVNTT------KLDEVAAAIG------PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             HTSGGGTCEEEEECTT------SHHHHHHHCC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             hhhccccccccccCcc------hHHHHHHHhc------cCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccc
Confidence            3455679998887653      4678888875      379999999999999999999966 58999999999999866


Q ss_pred             CCCCCCCCCCCCCCCcEEEEcccccCCCCCC-ceEEEEEeC
Q 007454          283 GPKDMDSFGLSLVRPDFLICSFYQIFGENPS-GFGCLFVKK  322 (603)
Q Consensus       283 ~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~-G~G~L~vkk  322 (603)
                      .|....|++   +++|+++-|.-|++++.-. -.|++.+++
T Consensus       174 tP~~~~Pl~---~GaDiVvhS~TKyi~GhsDv~~G~v~~~~  211 (380)
T d1ibja_         174 SPVLSRPLE---LGADIVMHSATKFIAGHSDVMAGVLAVKG  211 (380)
T ss_dssp             CTTTCCGGG---TTCSEEEEETTTTTTCSSCCCCEEEEECS
T ss_pred             ccccccccc---cCCCEEEecccceeccccCccccccccch
Confidence            665324554   6899999999999874322 134444443

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=98.30  E-value=3.8e-06  Score=85.41  Aligned_cols=133  Identities=11%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             HHHHHHHHcCCCCCcEEEecc-CchH-HHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCc
Q 007454          175 MKKRIMDFLNISENDYVYDYE-SEAV-EAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLH  252 (603)
Q Consensus       175 aR~~Ia~~lna~~~e~vf~~e-s~sV-~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~  252 (603)
                      +-..++.+++.. ++++.... .... .-+...+++.|.++.+++..      +.+.+++.++      ++|+++.+-.-
T Consensus        26 i~~~l~~ll~~G-d~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~------d~~~~~~~i~------~~t~~i~~Es~   92 (331)
T d1pffa_          26 IAASVWTFLKAG-DHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA------VPGNIEKHLK------PNTRIVYFETP   92 (331)
T ss_dssp             HHHHHHHHCCTT-CEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT------STTHHHHTCC------TTEEEEEEESS
T ss_pred             HHHHHHHHhCCC-CEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc------chhhHhhhcc------cccceeeeecc
Confidence            334566676532 45655322 1122 22334577889999998764      4566777775      47999999999


Q ss_pred             cccccccccHH-HHHH-HHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCc-eEEEEEeCC
Q 007454          253 SRMTGARYPYL-WMRI-AQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSG-FGCLFVKKS  323 (603)
Q Consensus       253 Sn~TG~~~pl~-~i~~-a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G-~G~L~vkk~  323 (603)
                      +|.+..+.|+. .+++ ++++|+.++||-+-..|-...|+   ++++|+++-|.=|++++.-.- .|+++.+++
T Consensus        93 ~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~~~pl---~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~  163 (331)
T d1pffa_          93 ANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL---DLGVDIVVHSATKYINGHTDVVAGLVCSRAD  163 (331)
T ss_dssp             CTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG---GGTCSEEEEETTTTTSSSSSCCCEEEEECHH
T ss_pred             cccccccccchhhhhhhhcccCceEEeecccccccccccc---ccCCCEEEecchhhcCCCCcccccccccccc
Confidence            99999999998 5666 57899999999875544321345   468999999999988642112 344544433

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.28  E-value=5.7e-05  Score=78.28  Aligned_cols=94  Identities=14%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEeccc
Q 007454          203 IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDACA  281 (603)
Q Consensus       203 ~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAaq  281 (603)
                      ....++.|.++..++..      +.++..+.+..     ++|+||-+=.-+|.+..+.|++.| ++||++|+.++||.+-
T Consensus       124 ~~~~~~~gi~~~~~~~~------~~~~~~~~~~~-----~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~  192 (398)
T d1qgna_         124 ETILPKMGITATVIDPA------DVGALELALNQ-----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF  192 (398)
T ss_dssp             HHTGGGGTCEEEEECSS------CHHHHHHHHHH-----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred             ccccccccccccccccc------chhhhhhhhcc-----ccceEEEccCccccccccchHHHHHHHHhhcCCEEEeccee
Confidence            34456678888777642      23444443332     379999999999999999999966 5899999999999986


Q ss_pred             cCCCCCCCCCCCCCCCcEEEEcccccCCC
Q 007454          282 LGPKDMDSFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       282 ~~~~~m~~ldls~~~~Dflv~S~hK~fG~  310 (603)
                      ..|....|+   ++++|+++-|.=|++|+
T Consensus       193 atP~~~~Pl---~~GaDiVihS~TKy~~G  218 (398)
T d1qgna_         193 ATPLNQKAL---ALGADLVLHSATKFLGG  218 (398)
T ss_dssp             TCTTTCCTT---TTTCSEEEECTTTTTTC
T ss_pred             eccccCCch---hhCCCEEEEechhhcCc
Confidence            555432345   45899999999999884

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=0.00018  Score=74.98  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             CeeEEEE-eCcccccccccc-HHHHH----HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCCcEEEEcccccCC-CCC
Q 007454          243 QRGLFVF-PLHSRMTGARYP-YLWMR----IAQENDWHILIDACALG-PKD--MDSFGLSLVRPDFLICSFYQIFG-ENP  312 (603)
Q Consensus       243 ~t~Lv~~-~~~Sn~TG~~~p-l~~i~----~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~Dflv~S~hK~fG-~~P  312 (603)
                      +..-|.+ |.+. ..|.+.| -+++.    +|+++|+.+++|=+|.+ +..  +--.+.-...||+++++  |-+| +.|
T Consensus       198 ~vaavi~EPi~g-~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g--K~l~gG~P  274 (425)
T d1sffa_         198 DIAAIVIEPVQG-EGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA--KSIAGGFP  274 (425)
T ss_dssp             GEEEEEECSBCT-TTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC--GGGGTSSC
T ss_pred             ceEEEEecCccC-CCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc--cccCCCcc
Confidence            4444444 5444 4777554 33442    68999999999998886 431  11111223579988875  6433 224


Q ss_pred             CceEEEEEeCCCCcCcCC
Q 007454          313 SGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       313 ~G~G~L~vkk~~~~~L~p  330 (603)
                        +|++++++++++.+.+
T Consensus       275 --~~av~~~~~i~~~~~~  290 (425)
T d1sffa_         275 --LAGVTGRAEVMDAVAP  290 (425)
T ss_dssp             --CEEEEEEHHHHTTSCT
T ss_pred             --eEEEEEcHHHHHhhCC
Confidence              8999999998766654

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=98.26  E-value=4e-05  Score=78.77  Aligned_cols=130  Identities=10%  Similarity=0.116  Sum_probs=87.0

Q ss_pred             HHHHHcCCCCC-cEEEec-cCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcccc
Q 007454          178 RIMDFLNISEN-DYVYDY-ESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRM  255 (603)
Q Consensus       178 ~Ia~~lna~~~-e~vf~~-es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~  255 (603)
                      .++..|++.+. +++... ...++   .......|+++..++++..++.++.+++++.+..      +|+.+.+.   ++
T Consensus        64 lal~~l~~~~gdeVi~p~~t~~a~---~~ai~~~g~~p~~~d~~~~~~~~d~~~~~~~i~~------~tk~i~~~---~~  131 (384)
T d1b9ha_          64 LALQVMGVGPGTEVIVPAFTFISS---SQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP------RTKVIMPV---HM  131 (384)
T ss_dssp             HHHHHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT------TEEEECCB---CG
T ss_pred             HHHHHcCCCCCCEEEEeccccccc---cccccccccccccccccccccccchhhhcccccc------cccccccc---cc
Confidence            34456788774 555442 22232   3345667999999998766788999999998863      68877654   46


Q ss_pred             ccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCC--CCCcEEEEcc--cccCCCCCCceEEEEEeCCC
Q 007454          256 TGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSL--VRPDFLICSF--YQIFGENPSGFGCLFVKKST  324 (603)
Q Consensus       256 TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~--~~~Dflv~S~--hK~fG~~P~G~G~L~vkk~~  324 (603)
                      .|...+++.+ .+|+++|+.++.|++|..|.   .++=..  ..-|+.++||  .|.++. . +-|+++.++.-
T Consensus       132 ~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga---~~~g~~~g~~g~~~~~Sf~~~K~i~~-g-~GG~i~t~~~~  200 (384)
T d1b9ha_         132 AGLMADMDALAKISADTGVPLLQDAAHAHGA---RWQGKRVGELDSIATFSFQNGKLMTA-G-EGGAVVFPDGE  200 (384)
T ss_dssp             GGCCCCHHHHHHHHHHHTCCBCEECTTCTTC---EETTEEGGGSSSCEEEECCTTSSSCS-S-SCEEEEECTTC
T ss_pred             cccccccccchhhhhhhhhhhhhhhceeccc---ccCCEecCcccccceecccccccccc-c-ccchhhhhhHH
Confidence            8999999855 58999999999999998875   222111  1135656555  677663 2 34566666543

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.25  E-value=6.2e-05  Score=79.47  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=64.2

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCceEEEeCCCCCCCCCCEEEEEEccCCCCccCHHHHHHH
Q 007454          424 RGLDQVDSLGLTMISRRGRCLINWLVNALMKLQ--HPNTEGNALVKIYGPKIRFDRGPALAFNVFDWKREKIEPVLVQKL  501 (603)
Q Consensus       424 ~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~--h~~~~g~plv~Iygp~~~~~rg~ivsFnv~~~~g~~v~~~~V~~L  501 (603)
                      +.|+.+++   +.+..+++.+.++|.++|.+|.  ||+  -+  -.|-|      +|-+++|.+.+.+   +... +.+.
T Consensus       356 a~l~~i~~---~~l~~~~~~~g~~l~~~l~~l~~~~~~--~i--~~vrG------~Gl~~~ie~~~~~---~~~~-i~~~  418 (461)
T d1ohwa_         356 EVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQ--FI--SRVRG------RGTFCSFDTPDES---IRNK-LISI  418 (461)
T ss_dssp             HHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTT--TC--EEEEE------ETTEEEEECSSHH---HHHH-HHHH
T ss_pred             ccchhhhh---hhHHHHHHHHHHHHHHHHHHHHhhCCC--ce--EEeee------eeEEEEEEcCCHH---HHHH-HHHH
Confidence            46776655   3455667777777777777653  322  11  12222      4667888876532   2222 3333


Q ss_pred             HhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 007454          502 ADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFEDVYRLWAFVAQFL  581 (603)
Q Consensus       502 ad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~eDVd~l~~~l~~~l  581 (603)
                      +-++||.++.                                        .+..+||+.+.+..|.+|||.+++.|.+.|
T Consensus       419 ~~~~Gll~~~----------------------------------------~~~~~ir~~PpL~it~~eid~~~~~l~~~l  458 (461)
T d1ohwa_         419 ARNKGVMLGG----------------------------------------CGDKSIRFRPTLVFRDHHAHLFLNIFSDIL  458 (461)
T ss_dssp             HHHTTEECEE----------------------------------------ETTTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHCCeEEee----------------------------------------CCCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence            4446776532                                        012489999999999999999999999887


Q ss_pred             hh
Q 007454          582 DA  583 (603)
Q Consensus       582 ~~  583 (603)
                      .+
T Consensus       459 ~e  460 (461)
T d1ohwa_         459 AD  460 (461)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=3e-05  Score=80.14  Aligned_cols=94  Identities=14%  Similarity=0.143  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHHhCCcEEEEecc
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQENDWHILIDAC  280 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~e~g~~vlvDAa  280 (603)
                      +...+++.|.++.++...      +.+++++.+..      +|++|-+=.-+|.|..+.|++.+ ++||++|+.++||.+
T Consensus       106 ~~~~~~~~g~~~~~~d~~------d~~~~~~~~~~------~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT  173 (384)
T d1cs1a_         106 FDSLAKRGCYRVLFVDQG------DEQALRAALAE------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNT  173 (384)
T ss_dssp             HHHHHTTTSCEEEEECTT------CHHHHHHHHHT------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred             hhhhhcccccccccccCC------CHHHHHhhccc------cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEecc
Confidence            344455667777776542      56788888874      79999999999999999999965 589999999999998


Q ss_pred             ccCCCCCCCCCCCCCCCcEEEEcccccCCC
Q 007454          281 ALGPKDMDSFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       281 q~~~~~m~~ldls~~~~Dflv~S~hK~fG~  310 (603)
                      -..|....|++   +++|+++-|.=|++++
T Consensus       174 ~atP~~~~Pl~---~GaDiVvhS~TKyi~G  200 (384)
T d1cs1a_         174 FLSPALQNPLA---LGADLVLHSCTKYLNG  200 (384)
T ss_dssp             TTCTTTCCGGG---GTCSEEEEETTTTTTC
T ss_pred             ccCcccccccc---cCCCEEEEcccccccc
Confidence            76665333444   6899999999999874

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=3.8e-05  Score=79.54  Aligned_cols=129  Identities=11%  Similarity=0.012  Sum_probs=84.7

Q ss_pred             HHHHHHcCCCCCcEEEec-cCchHHHH-HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccc
Q 007454          177 KRIMDFLNISENDYVYDY-ESEAVEAM-IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSR  254 (603)
Q Consensus       177 ~~Ia~~lna~~~e~vf~~-es~sV~~~-~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn  254 (603)
                      ..++.++.. -++++... -......+ .+.+.+.|.++..+...      +.+++++++.      ++|+++-+-.-+|
T Consensus        88 ~~l~~l~~~-Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~------d~~~~~~~i~------~~t~~i~~EtpsN  154 (391)
T d1cl1a_          88 NSILAFIEQ-GDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL------IGADIVKHLQ------PNTKIVFLESPGS  154 (391)
T ss_dssp             HHHHHHCCT-TCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT------CGGGGGGTCC------TTEEEEEEESSCT
T ss_pred             ehhhcccCC-CCeEEEecccccchhhhhhhcccccccccccccCc------cccccccccc------cccceeeecccCc
Confidence            345555543 34554432 12222222 34466789999988753      2345555554      4799999999999


Q ss_pred             cccccccHHHH-HHHHh--CCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcccccCCCCCCceEEEEEe
Q 007454          255 MTGARYPYLWM-RIAQE--NDWHILIDACALGPKDMDSFGLSLVRPDFLICSFYQIFGENPSGFGCLFVK  321 (603)
Q Consensus       255 ~TG~~~pl~~i-~~a~e--~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vk  321 (603)
                      .+..+.|++.+ ++|++  +|+.++||-+-..|-...|+   ++++|.++-|.=|++++.---+|..++.
T Consensus       155 P~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~~Pl---~~GaDivvhS~TKy~~GhsdvlgG~vv~  221 (391)
T d1cl1a_         155 ITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL---DFGIDVSIQAATKYLVGHSDAMIGTAVC  221 (391)
T ss_dssp             TTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG---GGTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred             ccccccccHHHHHHHHhccCCcEEEEeccccchhhhccc---ccccceEEeecchhccccccccccceec
Confidence            99999999955 46655  69999999987666532344   4689999999999987532224444443

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.19  E-value=0.0001  Score=76.38  Aligned_cols=97  Identities=12%  Similarity=0.210  Sum_probs=61.1

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCC--CCCCCCCCCCC
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKD--MDSFGLSLVRP  297 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~--m~~ldls~~~~  297 (603)
                      +.+.|++.+..     .++..|.+=-+....|.+.|    ++.+. +|+++|+.+++|=+|.+ +..  |-....-...|
T Consensus       174 ~~~~l~~~~~~-----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~P  248 (404)
T d1z7da1         174 DLEALEEELKD-----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKP  248 (404)
T ss_dssp             CHHHHHHHHTS-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred             hHHHHHHHhcC-----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCC
Confidence            34555555542     35566665334556898887    67664 89999999999987753 210  11222223579


Q ss_pred             cEEEEcccccCC--CCCCceEEEEEeCCCCcCcCCC
Q 007454          298 DFLICSFYQIFG--ENPSGFGCLFVKKSTVPILVDN  331 (603)
Q Consensus       298 Dflv~S~hK~fG--~~P~G~G~L~vkk~~~~~L~p~  331 (603)
                      |.++++  |-+|  +.|  +|++++|+++++.+++.
T Consensus       249 Divt~g--K~l~gG~~p--~~~v~~~~~i~~~~~~~  280 (404)
T d1z7da1         249 DVILLG--KALSGGHYP--ISAVLANDDIMLVIKPG  280 (404)
T ss_dssp             SEEEEC--GGGGTTSSC--CEEEEECHHHHTTCCTT
T ss_pred             CEEEEc--ccccCCCCC--cccccchHHHHccCCCC
Confidence            999776  6443  112  79999999887666543

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.12  E-value=0.00022  Score=72.26  Aligned_cols=132  Identities=16%  Similarity=0.147  Sum_probs=80.0

Q ss_pred             HHHHcCCCC-CcEEEe-ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccc
Q 007454          179 IMDFLNISE-NDYVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMT  256 (603)
Q Consensus       179 Ia~~lna~~-~e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~T  256 (603)
                      ++..+|+.+ +|++.. +...++   .......|++++.++++ ++......+.......   ..++|+.+.+.+.   .
T Consensus        52 al~~l~~~~gdeVi~p~~t~~a~---~~~~~~~g~~pv~~Di~-~~~~~~~~~~~~~~~~---~~~~~~aii~~~~---~  121 (374)
T d1o69a_          52 ALRVAGVKQDDIVLASSFTFIAS---VAPICYLKAKPVFIDCD-ETYNIDVDLLKLAIKE---CEKKPKALILTHL---Y  121 (374)
T ss_dssp             HHHHTTCCTTCEEEEESSSCGGG---THHHHHTTCEEEEECBC-TTSSBCHHHHHHHHHH---CSSCCCEEEEECG---G
T ss_pred             HHHHcCCCCcCEEEeCCcchHhh---HHHHhhccceeEecccc-cccccccccccccchh---ccccccccccccc---c
Confidence            445678866 456543 222222   22334569999999987 3333333333322221   1235777776654   7


Q ss_pred             cccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEccc--ccCCCCCCceEEEEEeCC
Q 007454          257 GARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSFY--QIFGENPSGFGCLFVKKS  323 (603)
Q Consensus       257 G~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~h--K~fG~~P~G~G~L~vkk~  323 (603)
                      |...+++.+ .+|+++|+.|+-||||+.|.....--+-.+ -|+-++|||  |.++.  .|-|+++.++.
T Consensus       122 G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~~~~~~G~~-gd~~~fSf~~~K~l~t--geGG~i~tnn~  188 (374)
T d1o69a_         122 GNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTF-GEFGVYSYNGNKIITT--SGGGMLIGKNK  188 (374)
T ss_dssp             GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCC--SSCEEEEESCH
T ss_pred             cchhhhHHHHHHhhccCcchhhhhhhhhcceECCeecCCC-CceEEEeccCcccccc--ccceeehhhhH
Confidence            999999855 689999999999999988752111111122 399999999  76663  24477777643

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=98.09  E-value=5e-05  Score=77.34  Aligned_cols=301  Identities=11%  Similarity=0.003  Sum_probs=160.1

Q ss_pred             HHHHHcCCCC---CcEEEe-ccCchHHHHHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcc
Q 007454          178 RIMDFLNISE---NDYVYD-YESEAVEAMIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHS  253 (603)
Q Consensus       178 ~Ia~~lna~~---~e~vf~-~es~sV~~~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~S  253 (603)
                      .++..+++.+   +|++.. +.-.+   ........|++++.++++. +..++.+++++.+.      ++|+.+.++|  
T Consensus        61 ~al~al~~~~~~~~eVi~p~~t~~a---~~~ai~~~G~~pv~vDi~~-~~~~~~~~~~~~~~------~~t~avi~vh--  128 (371)
T d2fnua1          61 TLYRNFSEFSADRNEIITTPISFVA---TANMLLESGYTPVFAGIKN-DGNIDELALEKLIN------ERTKAIVSVD--  128 (371)
T ss_dssp             HHHHHSSCCCTTSCEEEECSSSCTH---HHHHHHHTTCEEEECCBCT-TSSBCGGGSGGGCC------TTEEEEEEEC--
T ss_pred             HHHHHhcccCCCCCeeecccccccc---cceeeeccCcccccccccc-cccccchhhhhhcc------chhhcccccc--
Confidence            3455666633   255543 22222   2334456799999999985 45556566655543      4688887775  


Q ss_pred             ccccccccHHHH-HHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc--cccCCCCCCceEEEEEeCC-CCcCcC
Q 007454          254 RMTGARYPYLWM-RIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF--YQIFGENPSGFGCLFVKKS-TVPILV  329 (603)
Q Consensus       254 n~TG~~~pl~~i-~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~--hK~fG~~P~G~G~L~vkk~-~~~~L~  329 (603)
                       .-|...+++.+ .+|+++|+.++-||||+.|.....-.+ -..-|+.++||  .|.++.  .+-|+++.++. ..+.++
T Consensus       129 -~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~~~-G~~g~~~~~Sf~~~K~l~~--g~GG~i~t~~~~~~~~~~  204 (371)
T d2fnua1         129 -YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKV-GGFALASVFSFHAIKPITT--AEGGAVVTNDSELHEKMK  204 (371)
T ss_dssp             -GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEET-TSSSSEEEEECCTTSSSCC--SSCEEEEESCHHHHHHHH
T ss_pred             -ccccccccccccccccccchhhccchhhccCceeccccC-Ccccccccccccccccccc--ccceEEEeechhhhhhcc
Confidence             57999999855 589999999999999998852111111 12246667777  576662  24456655543 223333


Q ss_pred             CCCCCCceeccccccccccccccCCCCCCcccCcccccccccCCCChhhhhhhhhhhcCccccchhHHHhhhhhhhhhhh
Q 007454          330 DNTSSGMVSLLPAKKQLWLTDEFSSCETEPEQTSKSKQEKVAATNTFSGPMSIEMRQSGKLEQGEISEVRRAEADSIQQK  409 (603)
Q Consensus       330 p~~~gG~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~GT~n~~gi~gl~~~~~~~~~~~~i~~~~~~~~~~~~~~  409 (603)
                      .....|........   +                 ..  ...|...               .-+++++.           
T Consensus       205 ~~~~~g~~~~~~~~---~-----------------~~--~~~G~n~---------------r~sel~Aa-----------  236 (371)
T d2fnua1         205 LFRSHGMLKKDFFE---G-----------------EV--KSIGHNF---------------RLNEIQSA-----------  236 (371)
T ss_dssp             HHTBTTEEESSSSC---E-----------------EE--SSCCCBC---------------CCCHHHHH-----------
T ss_pred             cccccccccccccc---c-----------------cc--ccccccc---------------cccchhhh-----------
Confidence            21112332110000   0                 00  0112111               11122222           


Q ss_pred             ccCCCCCCCchhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeCCCCC-CCCCCEEEEEEccC
Q 007454          410 NANTNGGGGSEIECRGLDQVDSLGLTMISRRGRCLINWLVNALMKLQHPNTEGNALVKIYGPKIR-FDRGPALAFNVFDW  488 (603)
Q Consensus       410 ~~~~~~~~~~~~~~~ald~~~~iGl~~i~~r~~~L~~~L~~~L~~L~h~~~~g~plv~Iygp~~~-~~rg~ivsFnv~~~  488 (603)
                                    .++..++  .++.+.++-+.+.+++.+.|.+++        .+++.-|... ........+-+.+.
T Consensus       237 --------------igl~qL~--~l~~~~~~R~~~~~~y~~~l~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~~  292 (371)
T d2fnua1         237 --------------LGLSQLK--KAPFLMQKREEAALTYDRIFKDNP--------YFTPLHPLLKDKSSNHLYPILMHQK  292 (371)
T ss_dssp             --------------HHHHHHT--THHHHHHHHHHHHHHHHHHHTTCS--------SEEESGGGCSSCCCCSCEEEEECGG
T ss_pred             --------------hhhhhhh--hccchhhhhhhhhhhhcccccccc--------ccccccccccccccccccccccccc
Confidence                          2444443  366777776778888888887653        2555433211 12234455555543


Q ss_pred             CCCccCHHHHHHHHhcCCcEEeeCcccCccCCchhhhhhHHHHHhhhcccccccccccccCCCCCCCEEEEecCCCCCHH
Q 007454          489 KREKIEPVLVQKLADRENISLSYGSLHHIWFSDKYQKEKDNVLEKTDREAKSKSDNNRKDKANLGITVVTASLGYLANFE  568 (603)
Q Consensus       489 ~g~~v~~~~V~~Lad~~gI~lr~G~~C~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~VR~Slg~~tt~e  568 (603)
                      ..  .....+.+.+.++||.++....  + .+..      ..+.....-.+  ..+.    .......+.+=++..-|.+
T Consensus       293 ~~--~~r~~~~~~L~~~gI~~~~~y~--p-l~~~------~~~~~~~~~~~--~pna----e~~~~~~l~LP~~~~lt~~  355 (371)
T d2fnua1         293 FF--TCKKLILESLHKRGILAQVHYK--P-IYQY------QLYQQLFNTAP--LKSA----EDFYHAEISLPCHANLNLE  355 (371)
T ss_dssp             GG--GGHHHHHHHHHHTTEECBCCCC--C-GGGS------HHHHHHHCCCC--CHHH----HHHHHHEEEECCCTTCCHH
T ss_pred             ch--hHHHHHHHHHHHCCCCcceeCc--c-cccC------HHHHhccccCC--CHHH----HHHHhCeEECcCCCCCCHH
Confidence            21  1234455666789999876532  2 1111      11111100000  0000    0111247888888888999


Q ss_pred             HHHHHHHHHHHHHhh
Q 007454          569 DVYRLWAFVAQFLDA  583 (603)
Q Consensus       569 DVd~l~~~l~~~l~~  583 (603)
                      ||+++++.|.+++++
T Consensus       356 di~~I~~~i~~~~~~  370 (371)
T d2fnua1         356 SVQNIAHSVLKTFES  370 (371)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999875

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=0.0005  Score=71.46  Aligned_cols=134  Identities=9%  Similarity=0.002  Sum_probs=87.4

Q ss_pred             HHHHHHHcCCCCCcEEEecc-CchHHHH-HHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCcc
Q 007454          176 KKRIMDFLNISENDYVYDYE-SEAVEAM-IRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHS  253 (603)
Q Consensus       176 R~~Ia~~lna~~~e~vf~~e-s~sV~~~-~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~S  253 (603)
                      -..++.++.. -++++.... ......+ ...+.+.|.++.+++..     -..+..++.++      ++|+||-+=.-+
T Consensus        87 ~~~~~~l~~~-gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~-----~~~~~~~~~~~------~~t~li~~Etps  154 (421)
T d2ctza1          87 FLALTTLAQA-GDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE-----ERPEEFLALTD------EKTRAWWVESIG  154 (421)
T ss_dssp             HHHHHHHCCT-TCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT-----CCHHHHHHHCC------TTEEEEEEESSC
T ss_pred             HHHHHhhccc-ccceeecCCcCCchhHHHHHHHhhccccceecccc-----cCcchhccccC------CCceEEEEcCCC
Confidence            3345555543 234444322 1223333 34567889999887542     12344455554      479999999999


Q ss_pred             ccccccccHHHH-HHHHhCCcEEEEecccc-CCCCCCCCCCCCCCCcEEEEcccccCCCCCCce-EEEEEeCCC
Q 007454          254 RMTGARYPYLWM-RIAQENDWHILIDACAL-GPKDMDSFGLSLVRPDFLICSFYQIFGENPSGF-GCLFVKKST  324 (603)
Q Consensus       254 n~TG~~~pl~~i-~~a~e~g~~vlvDAaq~-~~~~m~~ldls~~~~Dflv~S~hK~fG~~P~G~-G~L~vkk~~  324 (603)
                      |.|..+.||+.| ++||++|+.++||.+=. .|....|++   +|+|+++-|.-|.+|+.---+ |++..+++.
T Consensus       155 NP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~---~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~  225 (421)
T d2ctza1         155 NPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNF  225 (421)
T ss_dssp             TTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG---GTCSEEEEETTTTTTCSSCCCCEEEEECSCS
T ss_pred             cceeEecchHHHHHHHHhcCCceEecccccccceeccccc---cCCcEEEEechhhccCCCCeEEEEEEcCCcc
Confidence            999999999966 58999999999998743 443113554   689999999999887432234 455555543

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.1e-05  Score=80.94  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=75.2

Q ss_pred             HHHHcCCEEEEEeccCCc-cccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSWPR-LRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~~~-g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|+++..++....+ ...+..++.+.+..   ..+++.++.++--+|.||..++.+.+    .+|++++++++.|-
T Consensus       136 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De  212 (396)
T d2q7wa1         136 VFNSAGLEVREYAYYDAENHTLDFDALINSLNE---AQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF  212 (396)
T ss_dssp             HHHHTTCEEEEEECEETTTTEECHHHHHHHHTT---CCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHcCCeeEecccccccccccccchHHHHHHH---hccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEec
Confidence            345678888888765332 23455666555543   23568899999999999999999733    36899999999998


Q ss_pred             cc-cCCCC--CCC----CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          280 CA-LGPKD--MDS----FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       280 aq-~~~~~--m~~----ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +- ....+  ..+    ...+.....++..|+-|-|+.+-..+|.+.+.....
T Consensus       213 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~  265 (396)
T d2q7wa1         213 AYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADS  265 (396)
T ss_dssp             SCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEECSSH
T ss_pred             cccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccchhHH
Confidence            62 22110  000    001122345677788898875312388888877654

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=97.94  E-value=0.00035  Score=72.78  Aligned_cols=99  Identities=16%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             CHHHHHHHHhhcCCCCCCeeEEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccCCCC--CCCCCCCCCCCc
Q 007454          226 NSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALGPKD--MDSFGLSLVRPD  298 (603)
Q Consensus       226 ~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~~~~--m~~ldls~~~~D  298 (603)
                      +.+.|++.|...   ..+...|.+--+....|.+.|    ++.+. +|+++|+++++|=+|.+-..  |-..+--...||
T Consensus       185 ~~~~le~~~~~~---~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PD  261 (427)
T d2gsaa_         185 DLEAVKALFAEN---PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPD  261 (427)
T ss_dssp             CHHHHHHHHTTS---TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCS
T ss_pred             hHHHHHHHHHhC---CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHH
Confidence            678888888642   234555555444455798888    77664 79999999999998875321  111111134799


Q ss_pred             EEEEcccccCCCCCCceEEEEEeCCCCcCcCC
Q 007454          299 FLICSFYQIFGENPSGFGCLFVKKSTVPILVD  330 (603)
Q Consensus       299 flv~S~hK~fG~~P~G~G~L~vkk~~~~~L~p  330 (603)
                      +++++-=---|+ |  +|++.+++++++.+.+
T Consensus       262 i~~~gK~lggG~-p--~~a~~~~~~i~~~~~~  290 (427)
T d2gsaa_         262 LTTLGKIIGGGL-P--VGAYGGKREIMQLVAP  290 (427)
T ss_dssp             EEEECGGGGTTS-C--CEEEEECHHHHTTBTT
T ss_pred             HHhhhhccCCCc-c--eeeeeehHHHHHHhcc
Confidence            999987322344 4  4677888887765553

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=97.90  E-value=0.00011  Score=75.86  Aligned_cols=117  Identities=13%  Similarity=0.028  Sum_probs=71.5

Q ss_pred             HHHcCCEEE-EEec-cCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          206 SEKRGARVM-SAEF-SWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       206 a~~~Ga~V~-~~~~-~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .+..|++.. +.+. +.....++.+.+++.+..   ..++++++.++--+|.||.+++-+.+    .+|++++++|+.|-
T Consensus       147 ~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De  223 (412)
T d1ajsa_         147 FTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLEN---APEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS  223 (412)
T ss_dssp             HHHTTCSCEEEEECEETTTTEECHHHHHHHHHH---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHcCCeEEEeecccccccccccHHHHHHHHHh---ccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecH
Confidence            344566533 3332 111234677777666653   13478999999999999999997633    46899999999997


Q ss_pred             ccc-CCCC---CCC----CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          280 CAL-GPKD---MDS----FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       280 aq~-~~~~---m~~----ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +-. ...+   ...    .........+++.|+-|-|+.+--.+|.+++.....
T Consensus       224 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~  277 (412)
T d1ajsa_         224 AYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEP  277 (412)
T ss_dssp             SCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSH
T ss_pred             hhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhHH
Confidence            521 1110   000    001122356777888888775312388888877654

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=2.4e-05  Score=81.13  Aligned_cols=93  Identities=11%  Similarity=0.108  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCEEEEEeccCCccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH-HHHH----hCCcEEE
Q 007454          202 MIRTSEKRGARVMSAEFSWPRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM-RIAQ----ENDWHIL  276 (603)
Q Consensus       202 ~~~~a~~~Ga~V~~~~~~~~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i-~~a~----e~g~~vl  276 (603)
                      +...+.+.|.++..++.       +.+++++.++      ++|+||-+-.-+|.+..+.|++.+ ++||    ++|+.++
T Consensus       110 ~~~~l~~~gi~~~~~~~-------~~~~~~~~i~------~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lv  176 (393)
T d1n8pa_         110 FTKVANAHGVETSFTND-------LLNDLPQLIK------ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILV  176 (393)
T ss_dssp             HHHTSTTTCSCCEEESS-------HHHHHHHHSC------SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEE
T ss_pred             hhhhhhcccceeEEeec-------chHHHHHHhh------hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEE
Confidence            33445567877776642       2467888775      479999999999999999999966 4677    6899999


Q ss_pred             EeccccCCCCCCCCCCCCCCCcEEEEcccccCCC
Q 007454          277 IDACALGPKDMDSFGLSLVRPDFLICSFYQIFGE  310 (603)
Q Consensus       277 vDAaq~~~~~m~~ldls~~~~Dflv~S~hK~fG~  310 (603)
                      ||.+-..|....|++   +|+|+++-|.=|++|+
T Consensus       177 VDnT~atP~~~~Pl~---~GADiVvhS~TKyi~G  207 (393)
T d1n8pa_         177 VDNTFLSPYISNPLN---FGADIVVHSATKYING  207 (393)
T ss_dssp             EECTTTHHHHCCGGG---GTCSEEEEETTTTTTC
T ss_pred             EecCccCcccCCchh---hCCCEEEEccccccCC
Confidence            999865554223554   6899999999999875

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=97.76  E-value=0.00023  Score=73.42  Aligned_cols=117  Identities=15%  Similarity=0.138  Sum_probs=78.3

Q ss_pred             HHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEecc
Q 007454          206 SEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDAC  280 (603)
Q Consensus       206 a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAa  280 (603)
                      ++..|+++..++... ....++.+.+...+...   ++++.++.++.-+|.||..++-+.+    .+|++++++++.|-+
T Consensus       141 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~  217 (412)
T d1yaaa_         141 FENQGLKTATYPYWANETKSLDLNGFLNAIQKA---PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTA  217 (412)
T ss_dssp             HHTTTCCEEEEECEETTTTEECHHHHHHHHHHS---CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHcCCceecccccccccccccchhhhcccccC---CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecce
Confidence            455678887777632 23456778888777642   2468899999999999999997632    367999999999986


Q ss_pred             c-cCCCCCC----CC-------CCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          281 A-LGPKDMD----SF-------GLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       281 q-~~~~~m~----~l-------dls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      - -...+ .    +.       .......-+++.|+=|-||.+-.-+|++++..+...
T Consensus       218 Y~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~  274 (412)
T d1yaaa_         218 YQGFATG-DLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQA  274 (412)
T ss_dssp             CTTTSSS-CHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCT
T ss_pred             eeecccC-CcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEEchhhhh
Confidence            2 12110 0    00       011112336777999988853223999999987754

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=97.75  E-value=0.00011  Score=75.50  Aligned_cols=119  Identities=8%  Similarity=-0.013  Sum_probs=77.8

Q ss_pred             HHHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|++++.+++.. ....++.+.+.+.+..   ..++++++.++--+|.||..++.+.+    .+|++++++++.|-
T Consensus       139 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De  215 (401)
T d7aata_         139 IFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK---IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDM  215 (401)
T ss_dssp             HHHHTTCEEEEEECEETTTTEECHHHHHHHHTT---SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHcCCeEEEEeccccccccccHHHHHHHHhc---CCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEec
Confidence            3456788888888642 2345678888877753   23478999999999999999999733    36899999999998


Q ss_pred             cc-cCCCC---CCCC---CCCCCCC-cEEEEcccccCCCCCCceEEEEEeCCCCc
Q 007454          280 CA-LGPKD---MDSF---GLSLVRP-DFLICSFYQIFGENPSGFGCLFVKKSTVP  326 (603)
Q Consensus       280 aq-~~~~~---m~~l---dls~~~~-Dflv~S~hK~fG~~P~G~G~L~vkk~~~~  326 (603)
                      +- ....+   -...   .+..... -+++.|+-|-|+.+-.-+|.+.+.....+
T Consensus       216 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~  270 (401)
T d7aata_         216 AYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAE  270 (401)
T ss_dssp             SCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHH
T ss_pred             cchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHH
Confidence            62 12110   0000   0111122 25567888877742123799988877654

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.58  E-value=0.00017  Score=73.67  Aligned_cols=118  Identities=16%  Similarity=0.103  Sum_probs=73.1

Q ss_pred             HHHHcCCEEEEEeccC-CccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEec
Q 007454          205 TSEKRGARVMSAEFSW-PRLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDA  279 (603)
Q Consensus       205 ~a~~~Ga~V~~~~~~~-~~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDA  279 (603)
                      .++..|++++.++... .....+.+++.+.+..   ..+++.++.++--+|.||..++.+.+    .+|++++++++.|-
T Consensus       133 ~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De  209 (394)
T d2ay1a_         133 IMNFMGLPVQTYRYFDAETRGVDFEGMKADLAA---AKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL  209 (394)
T ss_dssp             HHHHHTCCEEEEECEETTTTEECHHHHHHHHHT---CCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             HHHHcCCEEEEecccchhcccccchhHHHHHhh---cccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEec
Confidence            3445688888777632 2334556666666543   23468899999999999999998632    46899999999997


Q ss_pred             cc-cCCCCCC---C---CCCCCCCCcEEEEcccccCCCCCCceEEEEEeCCCC
Q 007454          280 CA-LGPKDMD---S---FGLSLVRPDFLICSFYQIFGENPSGFGCLFVKKSTV  325 (603)
Q Consensus       280 aq-~~~~~m~---~---ldls~~~~Dflv~S~hK~fG~~P~G~G~L~vkk~~~  325 (603)
                      +- ....+..   +   +......--.++.|+-|.|+.+-..+|.+.+.....
T Consensus       210 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~  262 (394)
T d2ay1a_         210 AYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADA  262 (394)
T ss_dssp             CCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSH
T ss_pred             cchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhchhHH
Confidence            62 2211000   0   001111123456677887764223488888887654

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=97.49  E-value=0.00065  Score=70.76  Aligned_cols=138  Identities=14%  Similarity=0.166  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHcCCC--CCcEEEeccC-chHHHHHHHHH--------HcCCEEEEEeccCCc--------------cc
Q 007454          170 GLESAMKKRIMDFLNIS--ENDYVYDYES-EAVEAMIRTSE--------KRGARVMSAEFSWPR--------------LR  224 (603)
Q Consensus       170 ~~~~~aR~~Ia~~lna~--~~e~vf~~es-~sV~~~~~~a~--------~~Ga~V~~~~~~~~~--------------g~  224 (603)
                      ++.+++|+.-...=|+.  +..|++..-+ +.+..++.++.        ..|.+|......|+.              -.
T Consensus       104 ~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~~  183 (425)
T d2hoxa1         104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWA  183 (425)
T ss_dssp             HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEEE
T ss_pred             HHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCccC
Confidence            44444444322222443  2347777654 34444444432        346777765443321              12


Q ss_pred             cCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHHHHHHhCCcEEEEeccccCCCCCCCCCCCCCCCcEEEEcc
Q 007454          225 INSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWMRIAQENDWHILIDACALGPKDMDSFGLSLVRPDFLICSF  304 (603)
Q Consensus       225 i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i~~a~e~g~~vlvDAaq~~~~~m~~ldls~~~~Dflv~S~  304 (603)
                      +|.+.+++.+      +++++++.+..-+|.||.+.      .+-.+++.++.|-+=..++- .++ .....-+.++.|+
T Consensus       184 ~D~~~~~~~~------~~~~~ii~l~sPnNPtG~l~------~~v~~~~~~I~DEaY~~~~f-~~~-~~~~~~~Ivl~S~  249 (425)
T d2hoxa1         184 GNAANYVNVS------NPEQYIEMVTSPNNPEGLLR------HAVIKGCKSIYDMVYYWPHY-TPI-KYKADEDILLFTM  249 (425)
T ss_dssp             EEGGGGTTCS------CGGGEEEEEESSCTTTCCCC------CCSSTTCEEEEECTTCSTTT-SCC-CSCBCCSEEEEEH
T ss_pred             CCHHHHHhhC------CCCceEEEEECCCCCCcchh------hhhhhCCEEEEeccccCccc-cch-hhhcCCeEEEEeC
Confidence            3444443333      34789999999999999863      23346899999987666652 344 2345678999999


Q ss_pred             cccCCCCCCc--eEEEEEeCC
Q 007454          305 YQIFGENPSG--FGCLFVKKS  323 (603)
Q Consensus       305 hK~fG~~P~G--~G~L~vkk~  323 (603)
                      =|.||.  .|  +|.++++.+
T Consensus       250 SK~fgl--aGlRiGw~i~~~~  268 (425)
T d2hoxa1         250 SKFTGH--SGSRFGWALIKDE  268 (425)
T ss_dssp             HHHTSC--GGGCCEEEEECCH
T ss_pred             HHhccC--cchheeeEEeCCH
Confidence            999995  36  788888754

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=96.37  E-value=0.012  Score=60.69  Aligned_cols=78  Identities=14%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             Cee-EEEEeCcccccccccc----HHHHH-HHHhCCcEEEEeccccC-CCCCCCCC---CCCCCCcEEEEcccccCCCCC
Q 007454          243 QRG-LFVFPLHSRMTGARYP----YLWMR-IAQENDWHILIDACALG-PKDMDSFG---LSLVRPDFLICSFYQIFGENP  312 (603)
Q Consensus       243 ~t~-Lv~~~~~Sn~TG~~~p----l~~i~-~a~e~g~~vlvDAaq~~-~~~m~~ld---ls~~~~Dflv~S~hK~fG~~P  312 (603)
                      +.. +++=|.+ -..|.+.|    ++.+. +|+++|+++++|=+|.+ +.. ...-   .-...||+++++===--|+ |
T Consensus       201 ~iAavi~EPi~-g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRt-G~~~~~~~~gv~PDi~~~gK~l~gG~-p  277 (431)
T d1zoda1         201 NLAAFIAEPIL-SSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTMFACQRDGVTPDILTLSKTLGAGL-P  277 (431)
T ss_dssp             CEEEEEECSEE-TTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT-SSSSTHHHHTCCCSEEEECHHHHTTS-S
T ss_pred             cccceeecccc-ccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccc-ccccccccCCCCcchhcccccccccc-c
Confidence            444 4444544 45777766    56564 79999999999998886 541 1111   1135799999873222444 4


Q ss_pred             CceEEEEEeCCCC
Q 007454          313 SGFGCLFVKKSTV  325 (603)
Q Consensus       313 ~G~G~L~vkk~~~  325 (603)
                        +|+.+++++.+
T Consensus       278 --~~av~~~~~~~  288 (431)
T d1zoda1         278 --LAAIVTSAAIE  288 (431)
T ss_dssp             --CEEEEECHHHH
T ss_pred             --cceeeeeecch
Confidence              46666666554

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.015  Score=58.86  Aligned_cols=204  Identities=15%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             hHHHHHHhhccC-cCCCCceeeecCCCCCCCHHHHHHHhcCCCCCCCCCCCCCCCCccccccccccccCccccccchHHH
Q 007454           92 QIDQIRAKEYYQ-LSLSNHTCLDYFGIGLFSYNQLHKQESSPSHLRPSLPSQNLDIPFFSVSYKTGNLKTQLLHGGQESG  170 (603)
Q Consensus        92 ~vd~iR~~efp~-L~~~~~vYLDyaa~tl~~~~v~~a~~~~~~~~~~~~p~~~~~~p~f~~s~~~aN~~s~~~~g~~~~~  170 (603)
                      .++..|++..|. ++..--+|.|..+.+|..+.|.++.......                       +...+.|+-..  
T Consensus        16 ~~~~~~~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~-----------------------~~~~~~Y~p~~--   70 (397)
T d3tata_          16 LMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQ-----------------------PHGASLYLPME--   70 (397)
T ss_dssp             HHHHHHHSCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTS-----------------------CCSSBCCCCTT--
T ss_pred             HHHHHhcCCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhC-----------------------cccCCCCCCcc--
Confidence            345666655554 1123347899999999899998885432111                       01111111100  


Q ss_pred             HHHHHHHHHHHHcCCC------CCcEEEeccCc-----hHHH---------------------HHHHHHHcCCEEEEEec
Q 007454          171 LESAMKKRIMDFLNIS------ENDYVYDYESE-----AVEA---------------------MIRTSEKRGARVMSAEF  218 (603)
Q Consensus       171 ~~~~aR~~Ia~~lna~------~~e~vf~~es~-----sV~~---------------------~~~~a~~~Ga~V~~~~~  218 (603)
                      =+.+.|+.|++++.-.      +++++-.....     ++..                     ....++..|+++..+++
T Consensus        71 G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~  150 (397)
T d3tata_          71 GLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPW  150 (397)
T ss_dssp             CCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCC
T ss_pred             cCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEec
Confidence            0126788888877532      33332221110     0111                     11234456888888877


Q ss_pred             cCC-ccccCHHHHHHHHhhcCCCCCCeeEEEEeCccccccccccHHHH----HHHHhCCcEEEEeccc-cCCCC--CCC-
Q 007454          219 SWP-RLRINSEKLRKMVVSKGKKKKQRGLFVFPLHSRMTGARYPYLWM----RIAQENDWHILIDACA-LGPKD--MDS-  289 (603)
Q Consensus       219 ~~~-~g~i~~~~L~~~l~~~~~~~~~t~Lv~~~~~Sn~TG~~~pl~~i----~~a~e~g~~vlvDAaq-~~~~~--m~~-  289 (603)
                      ... ...++.+++.+.+..   .+++++++.++--+|.||..++.+.+    ++|++++++++.|-+- ..-.+  ... 
T Consensus       151 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~  227 (397)
T d3tata_         151 YDEATNGVRFNDLLATLKT---LPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAY  227 (397)
T ss_dssp             CCTTTSSCCHHHHHHHHTT---CCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHH
T ss_pred             chhhccccchHHHHHHhhh---cccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccch
Confidence            432 234567777666653   23578899999999999999999633    4689999999999862 22110  000 


Q ss_pred             -C--CCCCCCCcEEEEcccccCCCCCCc--eEEEEEeCCCC
Q 007454          290 -F--GLSLVRPDFLICSFYQIFGENPSG--FGCLFVKKSTV  325 (603)
Q Consensus       290 -l--dls~~~~Dflv~S~hK~fG~~P~G--~G~L~vkk~~~  325 (603)
                       +  .......=+++.|+-|.||  ..|  +|.+.+.....
T Consensus       228 ~~~~~~~~~~~~i~~~s~SK~~~--~~G~RiG~~~~~~~~~  266 (397)
T d3tata_         228 AIRAIASAGLPALVSNSFSKIFS--LYGERVGGLSVMCEDA  266 (397)
T ss_dssp             HHHHHHTTTCCCEECBCCHHHHT--BTTTCCBCCEEECSST
T ss_pred             hhhhhhhcCCceEEEecCccccc--ccCccccccccchhHH
Confidence             0  0011112377889999888  335  68887776654