Citrus Sinensis ID: 007469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MGEGEGGEFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPPPQPQPKPVVPPVPPPPPPLPGQATQPPVRVPKPESPKSRSRSNVEVKENTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTAKDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDDCSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQDTIFMAASSPNRLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQKDALSNGTASSRTGTGNQPATVSNGVSKAYGPSALAAPAAKMSQMVTATVPISNNDLRHNPALPGEGDVKLKTENKM
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccHccHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHccccHHHHHHHHHHHHHEHHHHHHHHHHcccccccccccccccccccccHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccHEEEcccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccHHcccccccccccccccccccccccccccccc
mgegeggefppkksqsesggdipakKLARQLdftggfvgsvilpehpqsqavtanshpppqpqpkpvvppvpppppplpgqatqppvrvpkpespksrsrsnvevkentpkkqkqcnckhsrclklycecfasgiycdgcncvnchnnvENEAARREAVEATLernpnafrpkiassphgtrdnkeeTGEVLMlgkhnkgchckksgclkkYCECFQanilcsencrcmdcknfegseerqalfhgdhannMAYIQQAANAAITgaigssgyasppvskkrkgqelffgstakdpsihrlghfqqgnhirtspsstlssipvarasstaavgsskfTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTtekqaedragtsvassaqgrlqshkepdvdrtvtddcssanqadkvgpddsgsdgsdgqkarpmspgtlalmcdEQDTIFmaasspnrltghgcntssqlpygqgmtEVYAEQERIVLTKFRDCLNRLITFGeikemkysslartevgsqkdalsngtassrtgtgnqpatvsngvskaygpsalaapaaKMSQMVTatvpisnndlrhnpalpgegdvklktenkm
mgegeggefppkksqsesggDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPPPQPQPKPVVPPVPPPPPPLPGQATQPPVRVPkpespksrsrsnvevkentpkkqkqcnckhsrCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEAtlernpnafrpkiassphgtrdnKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTAKDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRnttekqaedragtsvassaqgrlqshkepdvdrtvtddcssanqadkvgpddsgsdgsdgqKARPMSPGTLALMCDEQDTIFMAASSPNRLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFgeikemkyssLARTevgsqkdalsngtassrtgtgnqpatvsNGVSKAYGPSALAAPAAKMSQMVTATVPisnndlrhnpalpgegdvklktenkm
MgegeggeFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHpppqpqpkpvvppvpppppplpgqatqppvRVpkpespksrsrsNVEVKENTPKKQKQCNCKHSRCLKLYCECFASGIYCDGcncvnchnnveneaarreaveaTLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTAKDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDDCSSANQADKVGPddsgsdgsdgQKARPMSPGTLALMCDEQDTIFMAASSPNRLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQKDALSNGTASSRTGTGNQPATVSNGVSKaygpsalaapaaKMSQMVTATVPISNNDLRHNPALPGEGDVKLKTENKM
*****************************QLDFTGGFVGSVIL************************************************************************CNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNV*****************************************VLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAI******************************************************************SKFTYRSLLADIIQPQDLKELCSVLVVLS***********************************************************************************LMCD*QDTIFM******************LPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKY****************************************************************************************
************************************************************************************************************************SRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATL****************************LMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCK************************************************************************************************************LLADIIQPQDLKELCSVLVVLSSEAAK*************************************************************************PGTLALMCDEQDTIFMAASSPN****************QGMTEVYAEQERIVLTKFRDCLNRLITFGEI*********************************************************************************************
*********************IPAKKLARQLDFTGGFVGSVILPEHPQS*******************PPVPPPPPP*****************************************KHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIA***********ETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSG***********GQELFFGSTAKDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAK************************************************************************SPGTLALMCDEQDTIFMAASSPNRLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLAR***********************QPATVSNGVSKAYGPSALAAPAAKMSQMVTATVPISNNDLRHNPALPGEGDVKLKTENKM
******************************************************************************************************************QCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKI*************************GCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAIT********************************IHRLGH******************************SSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQR**************************************************************ARPMSPGTLALMCDEQDTIFMAASS*****************GQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKY****************************************************************************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGEGEGGEFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPPPQPQPKPVVPPVPPPPPPLPGQATQPPVRVPKPESPKSRSRSNVEVKENTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTAKDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDDCSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQDTIFMAASSPNRLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQKDALSNGTASSRTGTGNQPATVSNGVSKAYGPSALAAPAAKMSQMVTATVPISNNDLRHNPALPGEGDVKLKTENKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query602 2.2.26 [Sep-21-2011]
Q9SZD1603 Protein tesmin/TSO1-like yes no 0.885 0.883 0.585 1e-173
Q9SL70571 Protein tesmin/TSO1-like no no 0.838 0.884 0.550 1e-156
F4JY84459 Protein tesmin/TSO1-like no no 0.651 0.854 0.448 3e-95
Q700D0368 Protein tesmin/TSO1-like no no 0.511 0.836 0.310 8e-37
Q95QD7435 Protein lin-54 OS=Caenorh yes no 0.267 0.370 0.423 4e-35
Q571G4749 Protein lin-54 homolog OS yes no 0.235 0.189 0.496 1e-34
A1Z9E2950 Protein lin-54 homolog OS yes no 0.287 0.182 0.395 3e-34
Q6MZP7749 Protein lin-54 homolog OS yes no 0.235 0.189 0.490 4e-34
Q641Z1749 Protein lin-54 homolog OS yes no 0.235 0.189 0.490 4e-34
Q08CM4771 Protein lin-54 homolog OS yes no 0.249 0.194 0.484 6e-34
>sp|Q9SZD1|TCX5_ARATH Protein tesmin/TSO1-like CXC 5 OS=Arabidopsis thaliana GN=TCX5 PE=1 SV=1 Back     alignment and function desciption
 Score =  608 bits (1569), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 339/579 (58%), Positives = 397/579 (68%), Gaps = 46/579 (7%)

Query: 1   MGE-GEGGEFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPP 59
           MGE G GGEFPPKK   E G   P KK ARQLDFTGG     +    P +  V A S  P
Sbjct: 1   MGEDGGGGEFPPKKDGVEEG--FPTKKPARQLDFTGGSDEHSL--SKPAAPTVVATSVKP 56

Query: 60  PQPQPKP----------------VVPPVPPPP----PPLPGQATQPPVRVPKPESPKSRS 99
                 P                V P +P       PP   Q    P+R P PESPK+R 
Sbjct: 57  IISSSVPSTIRPGMTIAIGQVTQVRPTLPMATTMSNPPSQSQIVNAPIRHPIPESPKARG 116

Query: 100 -RSNVEVKENTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREA 158
            R NVE ++ TP+K+KQCNCKHSRCLKLYCECFASG YCDGCNCVNC NNV+NE ARREA
Sbjct: 117 PRPNVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREA 176

Query: 159 VEATLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQA 218
           VEATLERNP AFRPKIASSPHG RD +E+ GEV++LGKHNKGCHCKKSGCLKKYCECFQA
Sbjct: 177 VEATLERNPFAFRPKIASSPHGGRDKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQA 236

Query: 219 NILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVS 278
           NILCSENC+C+DCKNFEGSEERQALFHG+H+N+MAY+QQAANAAITGA+GSSG+A  P  
Sbjct: 237 NILCSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAP 296

Query: 279 KKRKGQELFFGSTAKDPSIHRLGHFQQGNHIRT-SPSSTLSSIPVARASSTAAVGSSKFT 337
           K+RKGQE+ F    KD S  RL HF Q N+ RT  P+S  S  PV+RA   A+   SKF 
Sbjct: 297 KRRKGQEILFNQAIKDSS--RLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFV 354

Query: 338 YRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQ 397
           YRSLLADIIQP D++ LCSVLV ++ EAAK+   +RN  E + +D+  TS+ASSAQ + Q
Sbjct: 355 YRSLLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQTETSLASSAQDQPQ 414

Query: 398 -SHKEPDVDRTVTDDCSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQDTIFM 456
            ++   DV+   TD     NQADK GP++S SDG D  K  P+SP TLALMCDEQDTIFM
Sbjct: 415 GNNNAADVEMVATDH----NQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFM 470

Query: 457 -AASSPN-RLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKY 514
            AA SPN  +  +GC      P  QG +E+YAEQER+VLTKFRDCLNRLI++ EIKE K 
Sbjct: 471 VAAPSPNGSVDPNGCR-----PNSQGQSEIYAEQERLVLTKFRDCLNRLISYAEIKESKC 525

Query: 515 SSLARTEVGSQKDALSNGTASSRTGTGNQPATVSNGVSK 553
            SLAR  +  Q  A++  T  +  G   Q   + NG S+
Sbjct: 526 LSLARMHI--QPPAIA--TVKTENGIQQQ-VPIVNGASR 559
Plays a role in development of both male and female reproductive tissues (By similarity).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SL70|TCX6_ARATH Protein tesmin/TSO1-like CXC 6 OS=Arabidopsis thaliana GN=TCX6 PE=1 SV=1 Back     alignment and function description
>sp|F4JY84|TCX7_ARATH Protein tesmin/TSO1-like CXC 7 OS=Arabidopsis thaliana GN=TCX7 PE=1 SV=1 Back     alignment and function description
>sp|Q700D0|TCX8_ARATH Protein tesmin/TSO1-like CXC 8 OS=Arabidopsis thaliana GN=TCX8 PE=1 SV=1 Back     alignment and function description
>sp|Q95QD7|LIN54_CAEEL Protein lin-54 OS=Caenorhabditis elegans GN=lin-54 PE=1 SV=1 Back     alignment and function description
>sp|Q571G4|LIN54_MOUSE Protein lin-54 homolog OS=Mus musculus GN=Lin54 PE=2 SV=2 Back     alignment and function description
>sp|A1Z9E2|LIN54_DROME Protein lin-54 homolog OS=Drosophila melanogaster GN=mip120 PE=1 SV=1 Back     alignment and function description
>sp|Q6MZP7|LIN54_HUMAN Protein lin-54 homolog OS=Homo sapiens GN=LIN54 PE=1 SV=3 Back     alignment and function description
>sp|Q641Z1|LIN54_RAT Protein lin-54 homolog OS=Rattus norvegicus GN=Lin54 PE=2 SV=2 Back     alignment and function description
>sp|Q08CM4|LIN54_DANRE Protein lin-54 homolog OS=Danio rerio GN=lin54 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
225445198592 PREDICTED: uncharacterized protein LOC10 0.966 0.983 0.715 0.0
255546437601 transcription factor, putative [Ricinus 0.971 0.973 0.708 0.0
297738803524 unnamed protein product [Vitis vinifera] 0.865 0.994 0.75 0.0
356529628559 PREDICTED: uncharacterized protein LOC10 0.835 0.899 0.714 0.0
356522716559 PREDICTED: uncharacterized protein LOC10 0.911 0.982 0.648 0.0
224119800519 predicted protein [Populus trichocarpa] 0.835 0.969 0.745 0.0
224143568545 predicted protein [Populus trichocarpa] 0.825 0.911 0.695 0.0
356511363561 PREDICTED: uncharacterized protein LOC10 0.872 0.935 0.663 0.0
357500623629 Lin-54-like protein [Medicago truncatula 0.966 0.925 0.562 0.0
356523755551 PREDICTED: uncharacterized protein LOC10 0.885 0.967 0.638 0.0
>gi|225445198|ref|XP_002280793.1| PREDICTED: uncharacterized protein LOC100249023 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/612 (71%), Positives = 487/612 (79%), Gaps = 30/612 (4%)

Query: 1   MGEGEGGEFPPKKSQSESGG------DIPAKKLARQLDFT--GGFVGSVILPEHPQSQAV 52
           M +GEGG+FPPKK QS++ G      DIP KKLARQLDFT  GG   +V+LPEHPQSQ  
Sbjct: 1   MEQGEGGDFPPKKVQSDTAGTAAVTSDIPLKKLARQLDFTAFGGASAAVVLPEHPQSQPQ 60

Query: 53  TANSHPPPQPQPKPVVPPVPPPPPPLPGQATQPPVRVPKPESPKSRSRSNVEVKENTPKK 112
               HP        V  PVPP       Q T P VRV KPESP+SR R N++VK+ TPKK
Sbjct: 61  AQAQHP--------VTMPVPP-------QTTHPSVRVVKPESPRSRPRPNIDVKDGTPKK 105

Query: 113 QKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEATLERNPNAFRP 172
           QKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVE TLERNPNAFRP
Sbjct: 106 QKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCHNNVENEAARREAVEVTLERNPNAFRP 165

Query: 173 KIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCK 232
           KIASSPHG RD++EE+GE L+LGKHNKGCHCKKSGCLKKYCECFQANILCSENC+CMDCK
Sbjct: 166 KIASSPHGARDSREESGEALVLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCK 225

Query: 233 NFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTA 292
           NFEGSEERQALFHGDHAN+MAYIQQAANAAITGAIGSSG+ SPPVSKKRKGQELF+G T+
Sbjct: 226 NFEGSEERQALFHGDHANSMAYIQQAANAAITGAIGSSGFGSPPVSKKRKGQELFYGPTS 285

Query: 293 KDPSIHRLGHFQQGNHIRT-SPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDL 351
           KDPS+HRL  FQQ +  +    +S+LSS PV+R  ++AA G+SKFTYRSLLADIIQPQDL
Sbjct: 286 KDPSLHRLAQFQQASLTKASVTTSSLSSTPVSRVPNSAASGTSKFTYRSLLADIIQPQDL 345

Query: 352 KELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDD 411
           KELCSVLVV+S EAA++ A +RN  EK AE++  TS ASS Q RLQS KE D+++ V DD
Sbjct: 346 KELCSVLVVVSEEAARTFADKRNLVEKPAEEQVETSRASSTQDRLQSQKESDIEKAVADD 405

Query: 412 CSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQDTIFMAASSPNRLTGHGCNT 471
           CSS NQADK+GPDDS SDG D  K RPMSPGTLALMCDEQDT+FMAA+SPN L GH CNT
Sbjct: 406 CSSRNQADKLGPDDSSSDGGDVPKGRPMSPGTLALMCDEQDTMFMAAASPNVLMGHSCNT 465

Query: 472 SSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQKDALSN 531
           SSQLPYGQG+TE YAEQERI+LTKFRDCLNRLITFGEIKE K SSLARTE G Q +  SN
Sbjct: 466 SSQLPYGQGITEAYAEQERIILTKFRDCLNRLITFGEIKETKCSSLARTESGGQNEPFSN 525

Query: 532 GTASSRTGTGNQPATVSNGVSKAYGPSALAAPAAKMSQMVTATVPISNNDLRHNPALPGE 591
           G A++RT TGNQ   VSNGVSK   P     PA KMSQ VTA     NN L   P+   E
Sbjct: 526 GPANARTDTGNQQVPVSNGVSKPPFP-----PATKMSQTVTAAAASPNNTLLSKPSTHTE 580

Query: 592 -GDVKLKTENKM 602
            GD+ LKTE ++
Sbjct: 581 NGDINLKTEKEL 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255546437|ref|XP_002514278.1| transcription factor, putative [Ricinus communis] gi|223546734|gb|EEF48232.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297738803|emb|CBI28048.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356529628|ref|XP_003533391.1| PREDICTED: uncharacterized protein LOC100777698 [Glycine max] Back     alignment and taxonomy information
>gi|356522716|ref|XP_003529992.1| PREDICTED: uncharacterized protein LOC100818116 [Glycine max] Back     alignment and taxonomy information
>gi|224119800|ref|XP_002331164.1| predicted protein [Populus trichocarpa] gi|222873247|gb|EEF10378.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224143568|ref|XP_002325000.1| predicted protein [Populus trichocarpa] gi|222866434|gb|EEF03565.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356511363|ref|XP_003524396.1| PREDICTED: uncharacterized protein LOC100786353 [Glycine max] Back     alignment and taxonomy information
>gi|357500623|ref|XP_003620600.1| Lin-54-like protein [Medicago truncatula] gi|357500779|ref|XP_003620678.1| Lin-54-like protein [Medicago truncatula] gi|355495615|gb|AES76818.1| Lin-54-like protein [Medicago truncatula] gi|355495693|gb|AES76896.1| Lin-54-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356523755|ref|XP_003530500.1| PREDICTED: uncharacterized protein LOC100777327 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
TAIR|locus:2119981603 AT4G29000 [Arabidopsis thalian 0.790 0.789 0.549 7.1e-141
TAIR|locus:2061683571 AT2G20110 [Arabidopsis thalian 0.456 0.481 0.624 3.1e-124
TAIR|locus:2145294459 AT5G25790 [Arabidopsis thalian 0.455 0.596 0.491 4.6e-78
TAIR|locus:2093417368 AT3G16160 [Arabidopsis thalian 0.234 0.383 0.417 4.7e-39
ZFIN|ZDB-GENE-060929-440771 lin54 "lin-54 homolog" [Danio 0.255 0.199 0.403 6.8e-30
MGI|MGI:2140902749 Lin54 "lin-54 homolog (C. eleg 0.292 0.234 0.380 1.8e-28
UNIPROTKB|Q6MZP7749 LIN54 "Protein lin-54 homolog" 0.292 0.234 0.375 1.1e-27
RGD|1311361749 Lin54 "lin-54 homolog (C. eleg 0.292 0.234 0.375 1.1e-27
WB|WBGene00003037435 lin-54 [Caenorhabditis elegans 0.257 0.356 0.381 5.9e-27
UNIPROTKB|Q95QD7435 lin-54 "Protein lin-54" [Caeno 0.257 0.356 0.381 5.9e-27
TAIR|locus:2119981 AT4G29000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1312 (466.9 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
 Identities = 274/499 (54%), Positives = 328/499 (65%)

Query:   102 NVEVKENTPKKQKQCNCKHSRCLKLYCECFASGIYCDGXXXXXXXXXXXXXXXXXXXXXX 161
             NVE ++ TP+K+KQCNCKHSRCLKLYCECFASG YCDG                      
Sbjct:   120 NVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREAVEA 179

Query:   162 TLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKYCECFQANIL 221
             TLERNP AFRPKIASSPHG RD +E+ GEV++LGKHNKGCHCKKSGCLKKYCECFQANIL
Sbjct:   180 TLERNPFAFRPKIASSPHGGRDKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANIL 239

Query:   222 CSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKR 281
             CSENC+C+DCKNFEGSEERQALFHG+H+N+MAY+QQAANAAITGA+GSSG+A  P  K+R
Sbjct:   240 CSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRR 299

Query:   282 KGQELFFGSTAKDPSIHRLGHFQQGNHIRTS-PSSTLSSIPVARASSTAAVGSSKFTYRS 340
             KGQE+ F    KD S  RL HF Q N+ RT  P+S  S  PV+RA   A+   SKF YRS
Sbjct:   300 KGQEILFNQAIKDSS--RLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFVYRS 357

Query:   341 LLADIIQPQDLKELCSVLVVLSSEAAKSVAVQRNTTEKQAEDRAGTSVASSAQGRLQSHK 400
             LLADIIQP D++ LCSVLV ++ EAAK+   +RN  E + +D+  TS+ASSAQ + Q + 
Sbjct:   358 LLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQTETSLASSAQDQPQGNN 417

Query:   401 EP-DVDRTVTDDCSSANQADKVGPXXXXXXXXXXQKARPMSPGTLALMCDEQDTIFM-AA 458
                DV+   TD     NQADK GP           K  P+SP TLALMCDEQDTIFM AA
Sbjct:   418 NAADVEMVATDH----NQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFMVAA 473

Query:   459 SSPN-RLTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSL 517
              SPN  +  +GC      P  QG +E+YAEQER+VLTKFRDCLNRLI++ EIKE K  SL
Sbjct:   474 PSPNGSVDPNGCR-----PNSQGQSEIYAEQERLVLTKFRDCLNRLISYAEIKESKCLSL 528

Query:   518 ARTEVGSQKDALSNGTASSRTGTGNQPATVSNGVSKXXXXXXXXXXXXKMSQMVTATVPI 577
             AR  +  Q  A++  T  +  G   Q   + NG S+                  T+  P 
Sbjct:   529 ARMHI--QPPAIA--TVKTENGI-QQQVPIVNGASRTNCQPTLNKPQPMQLMNTTSAAPA 583

Query:   578 SNNDLRH---NPALPGEGD 593
             +  + +H    PAL  + D
Sbjct:   584 TATNTQHLQKPPALSEKKD 602
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2061683 AT2G20110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145294 AT5G25790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093417 AT3G16160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-440 lin54 "lin-54 homolog" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2140902 Lin54 "lin-54 homolog (C. elegans)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6MZP7 LIN54 "Protein lin-54 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311361 Lin54 "lin-54 homolog (C. elegans)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00003037 lin-54 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q95QD7 lin-54 "Protein lin-54" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZD1TCX5_ARATHNo assigned EC number0.58540.88530.8839yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016718001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (522 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
pfam0363842 pfam03638, CXC, Tesmin/TSO1-like CXC domain 8e-20
pfam0363842 pfam03638, CXC, Tesmin/TSO1-like CXC domain 1e-17
pfam05308248 pfam05308, Mito_fiss_reg, Mitochondrial fission re 1e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 2e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 5e-04
PRK12757256 PRK12757, PRK12757, cell division protein FtsN; Pr 6e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 8e-04
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.001
COG0810244 COG0810, TonB, Periplasmic protein TonB, links inn 0.002
PRK10819246 PRK10819, PRK10819, transport protein TonB; Provis 0.003
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.004
PRK11633226 PRK11633, PRK11633, cell division protein DedD; Pr 0.004
>gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain Back     alignment and domain information 
 Score = 82.3 bits (204), Expect = 8e-20
 Identities = 25/38 (65%), Positives = 28/38 (73%)

Query: 196 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKN 233
           +H KGC+CKKS CLKKYCECF A   CS  C+C  CKN
Sbjct: 1   RHKKGCNCKKSKCLKKYCECFAAGKYCSSLCKCEGCKN 38

This family includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C. The family includes Tesmin and TSO1. This family is called a CXC domain in. Length = 42
>gnl|CDD|202712 pfam03638, CXC, Tesmin/TSO1-like CXC domain Back     alignment and domain information
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 602
KOG1171406 consensus Metallothionein-like protein [Inorganic 100.0
PF0363842 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do 99.56
PF0363842 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do 99.55
KOG1171406 consensus Metallothionein-like protein [Inorganic 99.4
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 95.75
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-60  Score=495.80  Aligned_cols=366  Identities=39%  Similarity=0.604  Sum_probs=249.8

Q ss_pred             CCCCCCC-CCCCCCCCCCCCCCcchhhhhhhcccccCcccccccCCCCcchhhccCCCCCCCCCCC--------------
Q 007469            1 MGEGEGG-EFPPKKSQSESGGDIPAKKLARQLDFTGGFVGSVILPEHPQSQAVTANSHPPPQPQPK--------------   65 (602)
Q Consensus         1 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~rqldf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------   65 (602)
                      ||+...+ .||++...+   .++.. |-+|+||||++......+-.-+.+  +++.   .|-|+..              
T Consensus         1 ~g~~~~~~~~~~~~~~~---~~~~~-~~~r~l~f~~gg~~~~~~~~~~~~--~~s~---~p~p~i~~~~~~~~~~~~~i~   71 (406)
T KOG1171|consen    1 NGVTSSTTANPGQSDET---AQHRG-KRRRCLDFTMGGRTHTSVKPATGS--VASS---CPGPSIGLSLNKQIRSSKDIS   71 (406)
T ss_pred             CCccccCCCCCcccccc---ccccc-ccccceeecCCCCcccccCCCccc--cccc---CCcCceeccccceeecccccc
Confidence            4555444 888886433   34888 999999999987321111100111  1111   1222211              


Q ss_pred             -----------CCCCCCCCCCCCCCCCCCCCCccCCCCCCCCc-ccccchhhccCCcCCCCcccccCcccccchhhhhcC
Q 007469           66 -----------PVVPPVPPPPPPLPGQATQPPVRVPKPESPKS-RSRSNVEVKENTPKKQKQCNCKHSRCLKLYCECFAS  133 (602)
Q Consensus        66 -----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~e~kdgtpkk~K~CnCKKSkCLKLYCECFAa  133 (602)
                                 +.+..+..|+....+...+.++.++.+..+.+ ..+......++++-+++.|+||+|+||||||||||+
T Consensus        72 ~~~~~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~k~~~~ck~SkclklYCeCFAs  151 (406)
T KOG1171|consen   72 LSPDYSASNTIPHQTSGSTPMTLSMGHAIQSPTKHPIPEVRSSDRVKTKKGTSQGAPGSKKKCNCKKSKCLKLYCECFAS  151 (406)
T ss_pred             ccccccccccccccCCcccccccccccceecCCcCCCccccccccCccccccccCCCCCccCCCchHHHHHHHhHHHHhh
Confidence                       11111222322333445566788877776665 445567777889889999999999999999999999


Q ss_pred             CCCCCC-CCCCCCCCChhhHHHHHHHHHHHHhcCCCcCCccccCCCCCCCCCcchhhhhhhccCCcccccccCcCcccch
Q 007469          134 GIYCDG-CNCVNCHNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDNKEETGEVLMLGKHNKGCHCKKSGCLKKY  212 (602)
Q Consensus       134 G~yC~~-CnC~nC~Nn~Ene~eR~eAIe~iL~RNP~AF~PKI~ss~~~~~~s~~~~ge~l~~~kH~KGCnCKKS~CLKkY  212 (602)
                      |.||++ |+|+||+|+++|+.+|.+|++.+|+|||+||+|||+.+.++..+-.++.+..++.++|++|||||||+|||||
T Consensus       152 G~yC~~~CnCvnC~N~~~~e~~r~~a~k~~l~RNP~AFkPKia~s~~~~~da~~~~~~~~~sa~hkkGC~CkkSgClKkY  231 (406)
T KOG1171|consen  152 GVYCTGPCNCVNCFNNPEHESVRLKARKQILERNPNAFKPKIAASSSGIADASEEASKTPASARHKKGCNCKKSGCLKKY  231 (406)
T ss_pred             cccccCCcceeeccCCCcchHHHHHHHHHHhhcCccccccccccCCcccchhhhhhhccchhhhhcCCCCCccccchHHH
Confidence            999995 9999999999999999999999999999999999999999998888888888999999999999999999999


Q ss_pred             hhhhhcCCccCCCCcccCCCCCCCcHHhhhhhcccccchhHHHHHhhhhhhhcccCCCCCCCCcccccccCcccccCCCC
Q 007469          213 CECFQANILCSENCRCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGSTA  292 (602)
Q Consensus       213 CECFqAgi~CS~~CKC~dCKN~e~seER~~l~~~~~~~~~~~~qq~~n~a~~g~~g~s~~~~~~~~rkrk~qe~~~~~~~  292 (602)
                      |||||+|++|+++|||++|||+.+..+                             ++.                     
T Consensus       232 CECyQa~vlCS~nCkC~~CkN~~g~~~-----------------------------s~~---------------------  261 (406)
T KOG1171|consen  232 CECYQAGVLCSSNCKCQGCKNNFGYKD-----------------------------SKT---------------------  261 (406)
T ss_pred             HHHHhcCCCccccccCcCCccchhhcc-----------------------------ccc---------------------
Confidence            999999999999999999999222111                             000                     


Q ss_pred             CCCCCcccccccccCcCCCCCCCCCCCccccccCCccccCCCcccccccccccCCcccHHHHHHHHHHhhHHHHHHHHhh
Q 007469          293 KDPSIHRLGHFQQGNHIRTSPSSTLSSIPVARASSTAAVGSSKFTYRSLLADIIQPQDLKELCSVLVVLSSEAAKSVAVQ  372 (602)
Q Consensus       293 ~~~~~~~~~q~qq~n~~~~s~~ss~s~~~~~~~~~~~~~~~sk~~YRs~LAd~iqp~dV~~LcslLVvvs~eAakt~a~~  372 (602)
                                                                            +..+.++|+...|-.++.++...++.
T Consensus       262 ------------------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~  287 (406)
T KOG1171|consen  262 ------------------------------------------------------QQPPTKALMSTPVESSGPAAQQNTEA  287 (406)
T ss_pred             ------------------------------------------------------cCCchhhhcccccccccccccccccc
Confidence                                                                  33333444444443333333322221


Q ss_pred             hhhhhhhhhhhcccCcCCchhhhcccCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCchhhhhcccccc
Q 007469          373 RNTTEKQAEDRAGTSVASSAQGRLQSHKEPDVDRTVTDDCSSANQADKVGPDDSGSDGSDGQKARPMSPGTLALMCDEQD  452 (602)
Q Consensus       373 k~~~~~~~~~~~e~~~as~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~D~~~~RP~SPgT~ALMCDEqD  452 (602)
                      .         ......++...+...                     .+..+    .+..|+  +++++|-|++|||||.+
T Consensus       288 ~---------~~~~~~~~~~~~~~~---------------------~~~~l----p~~~~d--~~r~~~~~~~~~v~ea~  331 (406)
T KOG1171|consen  288 R---------RKSDPPASPLPDNDP---------------------LLLHL----PDLSDD--GNRLPPNTLALEVDEAI  331 (406)
T ss_pred             c---------cCCCCCCCCcccccc---------------------cccCC----cccccC--cCCCChHHHhhhhhhHH
Confidence            1         111111111111100                     11112    222222  39999999999999999


Q ss_pred             ccccccCCCCc-ccCCccCCCCCCCCCCchhhHHHHHHHHHHHhhHHHHHHHHhhhcccccccchhhhhhcCcc
Q 007469          453 TIFMAASSPNR-LTGHGCNTSSQLPYGQGMTEVYAEQERIVLTKFRDCLNRLITFGEIKEMKYSSLARTEVGSQ  525 (602)
Q Consensus       453 ~~F~~~~s~~~-~~~~~~~~~s~~p~~q~~sel~aeQEr~VLT~fRD~L~~lIt~G~ike~k~s~~a~~~~~~~  525 (602)
                      +++|-+..+.. ...       +   .|.-.++|.+||++||++|+|||..+|.+.+|..-++-.+..+.++..
T Consensus       332 ~~cm~~~~~~~~~~e-------~---~~~~~~~~~~~e~~vl~~f~~cl~~~i~~~~~~~~~~~r~~~~~~~~~  395 (406)
T KOG1171|consen  332 TICMLAQAEEAKPVE-------Q---SQNEGDKELEQEQLVLEEFGRCLEQIIPNITELSPDGDRASEDDPDVP  395 (406)
T ss_pred             HHHHhhccccccchh-------h---cccccchhHHHHHHHHHHHHHHHhccccccceecccccccccccCCcc
Confidence            99987543332 111       1   111122999999999999999999999999999888765666666554

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C Back     alignment and domain information
>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C Back     alignment and domain information
>KOG1171 consensus Metallothionein-like protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 2e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 3e-04
2grx_C229 Protein TONB; beta barrel, outer membrane, heteroc 6e-04
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 17/74 (22%), Positives = 29/74 (39%)

Query: 38  VGSVILPEHPQSQAVTANSHPPPQPQPKPVVPPVPPPPPPLPGQATQPPVRVPKPESPKS 97
           V  V   +    QAV     P  +P+P+P   P PP   P+  +  +P  +       K 
Sbjct: 37  VTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKV 96

Query: 98  RSRSNVEVKENTPK 111
           + +   +VK    +
Sbjct: 97  QEQPKRDVKPVESR 110
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
2lua_A52 Protein MALE-specific lethal-2; DNA binding protei 96.11
2lua_A52 Protein MALE-specific lethal-2; DNA binding protei 95.29
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 81.55
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster} Back     alignment and structure
Probab=96.11  E-value=0.0034  Score=49.77  Aligned_cols=38  Identities=32%  Similarity=0.922  Sum_probs=32.4

Q ss_pred             cccccccCc-------CcccchhhhhhcCCccCCCCcccCCCCCCC
Q 007469          198 NKGCHCKKS-------GCLKKYCECFQANILCSENCRCMDCKNFEG  236 (602)
Q Consensus       198 ~KGCnCKKS-------~CLKkYCECFqAgi~CS~~CKC~dCKN~e~  236 (602)
                      .++|.|-.+       .|-...|-||.++..|+ +|+|.+|+|-..
T Consensus         4 k~~CrCG~~~~~~~~~TC~~~RCpCY~~~~sC~-~C~C~GCkNPhk   48 (52)
T 2lua_A            4 KPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCA-GCHCVGCKNPHK   48 (52)
T ss_dssp             CCCCCBTTBSCCCSSSTTTSTTCHHHHTTCCCS-SCCCSSCCCSCC
T ss_pred             CcccccCcccCCCCceeEcCCccceecCCCccC-CCEecCcCCCCc
Confidence            478888444       79999999999999998 599999999743
>2lua_A Protein MALE-specific lethal-2; DNA binding protein, metal binding; NMR {Drosophila melanogaster} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00