Citrus Sinensis ID: 007526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600
Protein Sequence
MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccHHHccccccccccccccccccEccccccccccEEEEEccccccccccHHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHccccccccEEEcccccccHHHHHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccccccEEEcccccccHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEcHcEEHcc
Coil and Loop (DISEMBL)
mgststislyshpklshraqpvlsrsfcqardaplsfalpfsgtrrcfRLKRLVVKAaarpeggrrqrRVYRqsqsdnalttapvkQIASFVVPAGVFVSATFVLWKLVEKllmpkpsrpskptaegmnwsvgagtnllsgftgKLFRESKQTLNEFAKELRAFSsvdmsgrnfgdeGLFFLAESlgynqtaeevsfAANGITAAGIKAFDGVLQSNIALktlnlsgnpigdegVKCLCDILvdnagverlqlssVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTirslhlngnyggaLGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDignnsisakGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQnrtittidlggnnihskGASAIARVLkdnsvitsldlaynpigaDGAKALSEVLKFHGnintlklgwcqigaSGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Flexible Loop (DISEMBL)
mgststislyshpklshrAQPVLSRSFCQARDAPLsfalpfsgtrrcfRLKRLvvkaaarpeggrrqrrvyrqsqsdnalttapvKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTIttidlggnnihSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Low Complexity Region (SEG)
MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGrrqrrvyrqsqsDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHlngnyggalganalakglegnKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Disordered region (IsUnstruct)
************************RSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAA**********************TTAPVKQIASFVVPAGVFVSATFVLWKLVEKLL***************NWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCIS**
Disordered Region (DISOPRED)
*******************************DAPLSFALPFSGTRRCFRLKR*******************************PVKQIASFVVPAGVFVSATFVLWKLVE*******************WSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Disordered Region (DISEMBL)
********LYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAA*********************TTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKP********EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Disordered Region (DISPRO)
****STISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCISLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	600	2.2.26 [Sep-21-2011]
Q7RTR2	1065	Protein NLRC3 OS=Homo sap	yes	no	0.701	0.395	0.363	5e-53
Q5DU56	1064	Protein NLRC3 OS=Mus musc	yes	no	0.691	0.390	0.340	6e-46
P29315	456	Ribonuclease inhibitor OS	yes	no	0.645	0.848	0.264	2e-27
Q91VI7	456	Ribonuclease inhibitor OS	no	no	0.601	0.791	0.274	2e-26
P10775	456	Ribonuclease inhibitor OS	no	no	0.61	0.802	0.264	5e-26
Q647I9	1098	NACHT, LRR and PYD domain	no	no	0.573	0.313	0.281	2e-25
P13489	461	Ribonuclease inhibitor OS	no	no	0.676	0.880	0.267	6e-24
Q9LE82	535	RAN GTPase-activating pro	no	no	0.618	0.693	0.262	1e-23
Q8HZP9	461	Ribonuclease inhibitor OS	no	no	0.676	0.880	0.267	2e-23
Q8BHB0	953	Nucleotide-binding oligom	no	no	0.363	0.228	0.32	2e-23

>sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2

 Score =  209 bits (532), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 155/426 (36%), Positives = 228/426 (53%), Gaps = 5/426 (1%)

Query: 150  SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
            S+  L     +L     + +    F D  +  L   L G +   +++S A N I+  G K
Sbjct: 625  SQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAK 684

Query: 209  AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
            A    L  N +L +L+L GN IG +G K L D L  N  +  L L    +RD+GA+++AE
Sbjct: 685  ALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAE 744

Query: 269  LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
             L +N  L +L L  N I   G   +A+AL +N +++ L  + N  G  GA ALA+ L+ 
Sbjct: 745  ALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKV 804

Query: 329  NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
            N+ L  L L  NSI D G+ ALM  L + +  L+ L +  NSIS +GA  +A  +    +
Sbjct: 805  NQGLESLDLQSNSISDAGVAALMGALCTNQTLLS-LSLRENSISPEGAQAIAHALCANST 863

Query: 389  LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
            L  ++L  N + D+GA  IA A+++NRT+T++ L  N I +  A A+ + L+ N  +TSL
Sbjct: 864  LKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSL 923

Query: 449  DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
            DL  N IG DGA A++  LK +  +  L L    IGASGA+ + + L  N T+ ILDLR 
Sbjct: 924  DLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRG 983

Query: 509  NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
            N +   GAK LA + K VN +L  ++L  N +  DGA  IA AL  N    +  +NL  N
Sbjct: 984  NAIGVAGAKALANALK-VNSSLRRLNLQENSLGMDGAICIATALSGNHR--LQHINLQGN 1040

Query: 569  FLTKFG 574
             +   G
Sbjct: 1041 HIGDSG 1046

May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA.
Homo sapiens (taxid: 9606)

>sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2

 Score =  186 bits (471), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 220/420 (52%), Gaps = 5/420 (1%)

Query: 150  SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
            S+  L     +L    S+ +    F D  +  L   L G +    ++S A N I   G K
Sbjct: 624  SQHVLQSLLPQLLYCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAK 683

Query: 209  AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
            A    L  N +L TL+L  N IG  G K L D L  N  +  L L S  ++D+G   +AE
Sbjct: 684  ALARSLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAE 743

Query: 269  LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
             L +N  + +L+L  N+I   G   +A+AL +N ++++L  + N  G  GA ALA+ L+ 
Sbjct: 744  ALVSNQTISMLQLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKV 803

Query: 329  NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
            N+ L  L L  NSI D G+  LM  L S +  L+ L++  NSIS +GA  + + +    +
Sbjct: 804  NQILENLDLQSNSISDMGVTVLMRALCSNQ-TLSSLNLRENSISPEGAQALTQALCRNNT 862

Query: 389  LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
            L  ++L  N + D GA+ IA A+ +N ++T + L  N I +  A A+ + L+ N  +T+L
Sbjct: 863  LKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTL 922

Query: 449  DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
            DL  N IG +GA +++  LK +  +  L L    IG+ GA+ + + L  N T+ ILDLR 
Sbjct: 923  DLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRG 982

Query: 509  NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
            N +   GAK LA + K +N +L  ++L  N +  DGA  +A AL  N    +  +NL  N
Sbjct: 983  NDVGAAGAKALANALK-LNSSLRRLNLQENSLGMDGAIFVASALSENH--GLHHINLQGN 1039

May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA.

Mus musculus (taxid: 10090)

>sp|P29315|RINI_RAT Ribonuclease inhibitor OS=Rattus norvegicus GN=Rnh1 PE=1 SV=2

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 191/397 (48%), Gaps = 10/397 (2%)

Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
           A + + +     GD G+  + + L  N T   +++S     +T AG      VL+S   L
Sbjct: 52  ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110

Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           + L+L+ NP+GDEG+K LC+ L D    +E+LQL   +L     + +A +L+     + L
Sbjct: 111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
            L+NN    +G  +L + L +++  + SL L      +     L   +    SL+EL L 
Sbjct: 171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N +G+ GI AL SGL     +L  L + +  ++A+G   +   ++  +SL  ++L  N+
Sbjct: 231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290

Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
           + DEGA+ + ++ L+    + ++ +   ++ +        VL  N  +  L ++ NP+G 
Sbjct: 291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350

Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
            G   L + L +   +   L LG C +  SG   +A +L  N ++  LDL  N + D G 
Sbjct: 351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDNGV 410

Query: 517 KCLAQSFK---VVNEALTSIDLAFNEIRDDGAFAIAQ 550
             L +S K    + + L   D+ + +  +D   A+ +
Sbjct: 411 LQLLESLKQPSCILQQLVLYDIYWTDEVEDQLRALEE 447

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Rattus norvegicus (taxid: 10116)

>sp|Q91VI7|RINI_MOUSE Ribonuclease inhibitor OS=Mus musculus GN=Rnh1 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 7/368 (1%)

Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
           A + + +     GD G+  + + L  N T   +++S    G+T AG     G+L+S   L
Sbjct: 52  ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 110

Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           + L+L+ NP+GD G+K LC+ L D    +E+LQL   +L     + +A +L+  +  + L
Sbjct: 111 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 170

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
            L+NN +   G   L + L +++  + SL L      A     L   +    SL+EL L 
Sbjct: 171 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 230

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N +G+ GI AL  GL     KL  L +    I+A+G   +   ++  +SL  ++L  N+
Sbjct: 231 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 290

Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
           + DEGA  + ++ L+    + ++ +   ++ +        VL  +  +  L ++ NP+G 
Sbjct: 291 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 350

Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
           +G + L + L     +   L LG C +  SG   +A++L  N ++  LDL  N +   G 
Sbjct: 351 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 410

Query: 517 KCLAQSFK 524
             L +S K
Sbjct: 411 LQLLESLK 418

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Mus musculus (taxid: 10090)

>sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1

 Score =  119 bits (299), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 176/374 (47%), Gaps = 8/374 (2%)

Query: 150 SKQTLNEFAKELRA---FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAA 205
           +++   +    LRA    + + +     GD G+  + + L       +++S     +T A
Sbjct: 36  TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEA 95

Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAK 264
           G       L+S   L+ L+LS NP+GD G++ LC+ L+D    +E+LQL    L     +
Sbjct: 96  GCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCE 155

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
            +A +L+    L+ L ++NN I  +G   L + L +++  + +L L            L 
Sbjct: 156 PLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 215

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
             +    SLREL L  N +GD GI  L  GL S   +L  L +    I+A G   +   +
Sbjct: 216 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 275

Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN 442
           +  ++L  ++L  N +GDEGA  + ++L Q    + ++ +   ++ +     ++ +L  N
Sbjct: 276 QAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQN 335

Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTI 501
             +  L L+ N +G  G + L + L   G  +  L LG C++  SG   +A +L  N ++
Sbjct: 336 KHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSL 395

Query: 502 SILDLRANGLRDEG 515
             LDL  N + D G
Sbjct: 396 RELDLSNNCVGDPG 409

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Sus scrofa (taxid: 9823)

>sp|Q647I9|NALP5_BOVIN NACHT, LRR and PYD domains-containing protein 5 OS=Bos taurus GN=NLRP5 PE=2 SV=1

 Score =  118 bits (295), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 4/348 (1%)

Query: 162  RAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIAL 220
            R  + +D++G    +E +    E+L + Q A E +     G+T A  +    VL ++ +L
Sbjct: 736  RNITRLDLTGCRLREEDVQTACEALRHPQCALESLRLDRCGLTPASCREISQVLATSGSL 795

Query: 221  KTLNLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            K+L+L+GN + D+GVK LCD L V    +++L L S  L     + +A  L  N  L  L
Sbjct: 796  KSLSLTGNKVADQGVKSLCDALKVTPCTLQKLILGSCGLTAATCQDLASALIENQGLTHL 855

Query: 280  ELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
             L+ + +   G + L  A+ L +  ++ L LN       G   LA  L GN+ L  L L 
Sbjct: 856  SLSGDELGSKGMSLLCRAVKLSSCGLQKLALNACSLDVAGCGFLAFALMGNRHLTHLSLS 915

Query: 339  GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
             N + D G+  L   +      L  LD+ N  ++A     ++  I     L  ++L  N 
Sbjct: 916  MNPLEDPGMNLLCEVMMEPSCPLRDLDLVNCRLTASCCKSLSNVITRSPRLRSLDLAANA 975

Query: 399  IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
            +GDEG   + + LKQ  T+T + L    + S+G  A++  L  +  + SL+L  N +G  
Sbjct: 976  LGDEGIAALCEGLKQKNTLTRLGLEACGLTSEGCKALSAALTCSRHLASLNLMRNDLGPR 1035

Query: 459  GAKAL-SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505
            G   L S  +    N+ T+ L   Q  A     +  + R    + I D
Sbjct: 1036 GMTTLCSAFMHPTSNLQTIGLWKEQYPARVRRLLEQVQRLKPHVVISD 1083

As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress beyond the first embryonic cell divisions.

Bos taurus (taxid: 9913)

>sp|P13489|RINI_HUMAN Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2

 Score =  112 bits (281), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 178/415 (42%), Gaps = 9/415 (2%)

Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
             S+D+      D      AE L   Q  + V     G+T A  K     L+ N AL  L
Sbjct: 5   IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
           NL  N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
           +N++  +G   L E LL+    +  L L      A     LA  L      +EL +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           I + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            G AE     L  +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
           + L E L   G  + +L +  C   A+     + +L  N  +  L +  N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361

Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
            Q        L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 186/415 (44%), Gaps = 44/415 (10%)

Query: 94  PAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTG--KLF---R 148
           P G   SA  V  K   KL++    R  +  +E     V    ++    +G  + F    
Sbjct: 77  PDGDGTSAVHVYAKESSKLMLDVIKRGPQEESE---VEVSKDGDVFFDISGGSRAFIEEE 133

Query: 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLG--YNQTAE-EVS-FAANGITA 204
           E++  L   A    +++ +  S R+FG E   F A  L    +Q  E ++S F A    A
Sbjct: 134 EARDLLRPLADPRNSYTKIRFSNRSFGSEAAKFAASVLSSIKDQLTEVDLSDFVAGRPEA 193

Query: 205 AGIKA---FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261
             ++    F   L+ +  L+ LNLS N +G++G++    ++     +E L L +  + ++
Sbjct: 194 EALEVMNMFSSALEGS-KLRYLNLSDNALGEKGIRAFASLINSQHDLEELYLMNDGISED 252

Query: 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321
            A+A+ ELL +   +RVL+ +NNM    G T++AE + E  ++     +    G+ G  A
Sbjct: 253 AARAVRELLPSTDKIRVLQFHNNMTGDEGATAIAEIVRECPSLEDFRCSSTRIGSEGGVA 312

Query: 322 LAKGLEGNKSLRELHLHGNSIG----------------------------DEGIRALMSG 353
           LA+ LE    L++L L  N  G                            DEG  AL   
Sbjct: 313 LAEALEHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEIYMSYLNLEDEGTEALSEA 372

Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
           L      L VL++  N I+ K   ++A  I + +SL  +NL  N++ DEG   IA A++ 
Sbjct: 373 LLKSAPSLEVLELAGNDITVKSTGNLAACIASKQSLAKLNLSENELKDEGTILIAKAVEG 432

Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468
           +  +  +DL  N I   GA A+A+ +   +    L++  N I  +G   ++++ K
Sbjct: 433 HDQLVEVDLSTNMIRRAGARALAQTVVKKNTFKLLNINGNFISEEGIDEVNDMFK 487

GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8HZP9|RINI_PANTR Ribonuclease inhibitor OS=Pan troglodytes GN=RNH1 PE=2 SV=3

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/415 (26%), Positives = 178/415 (42%), Gaps = 9/415 (2%)

Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
             S+D+      D      AE L   Q  + V     G+T A  K     L+ N AL  L
Sbjct: 5   IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 224 NLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
           NL  N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQSPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
           +N++  +G   L E LL+    +  L L      A     LA  L      +EL +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCNLSAASCKPLASVLRAKPDFKELTVSNND 181

Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           I + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            G AE     L  +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
           + L E L   G  + +L +  C   A+     + +L  N  +  L +  N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNKFLLELQISNNRLEDAGVQEL 361

Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
            Q        L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414

Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis.

Pan troglodytes (taxid: 9598)

>sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization domain-containing protein 1 OS=Mus musculus GN=Nod1 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 346 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405
           G++ L    S    +L V+ +  N I+  G   + E +   K + ++ LY N I D GA 
Sbjct: 719 GVQELQPCFS----RLTVIRLSVNQITDTGVKVLCEELTKYKIVTFLGLYNNQITDIGAR 774

Query: 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465
            +A  L + R +  + LG N I S+G   +A  +K+++ I  + +  N IG +GAKA +E
Sbjct: 775 YVAQILDECRGLKHLKLGKNRITSEGGKCVALAVKNSTSIVDVGMWGNQIGDEGAKAFAE 834

Query: 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV 525
            LK H ++ TL L +  I   G + +A  L+ N T++++ L  N L DE A+C A+  + 
Sbjct: 835 ALKDHPSLTTLSLAFNGISPEGGKSLAQALKQNTTLTVIWLTKNELNDESAECFAEMLR- 893

Query: 526 VNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
           VN+ L  + L  N I   G   +A+AL+ N   A+T + L  N +
Sbjct: 894 VNQTLRHLWLIQNRITAKGTAQLARALQKN--TAITEICLNGNLI 936

Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS). Forms an intracellular sensing system along with ARHGEF2 for the detection of microbial effectors during cell invasion by pathogens.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
356501981	606	PREDICTED: protein NLRC3-like [Glycine m	0.956	0.947	0.712	0.0
255558382	607	leucine rich repeat-containing protein,	0.946	0.935	0.716	0.0
296086512	630	unnamed protein product [Vitis vinifera]	0.946	0.901	0.706	0.0
357486129	606	Nucleotide-binding oligomerization domai	0.951	0.942	0.708	0.0
356498020	606	PREDICTED: protein NLRC3-like [Glycine m	0.956	0.947	0.702	0.0
359473416	684	PREDICTED: protein NLRC3-like [Vitis vin	0.926	0.812	0.726	0.0
297843864	605	EMB2004 [Arabidopsis lyrata subsp. lyrat	0.951	0.943	0.709	0.0
18391166	605	leucine-rich repeats-ribonuclease inhibi	0.945	0.937	0.705	0.0
258678027	614	chloroplast envelope protein 1 [Nicotian	0.956	0.934	0.677	0.0
449452044	602	PREDICTED: LOW QUALITY PROTEIN: protein	0.946	0.943	0.683	0.0

>gi|356501981|ref|XP_003519801.1| PREDICTED: protein NLRC3-like [Glycine max]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/585 (71%), Positives = 487/585 (83%), Gaps = 11/585 (1%)

Query: 1   MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAAR 60
           M  TST+S+YSHP++    Q + S  F  A  A  +  LP    RR    +  V + ++ 
Sbjct: 1   MAFTSTLSIYSHPQVRLLNQRLQSLPFTAAGVAQFA-PLPPLNRRRTCSPRSFVFRVSSS 59

Query: 61  PEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPK 116
            EG R +    RRVYRQSQ+   L++APVKQIA+ V P   F + TFV+WKLVEKLL+P 
Sbjct: 60  VEGSRARSGGSRRVYRQSQASAPLSSAPVKQIANVVAPVAAFFALTFVIWKLVEKLLVPT 119

Query: 117 PSR------PSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
           P +       S+  ++G+ WS  AGTNLLS    K+ R+SKQ LNEFA+ELR+FSS+DMS
Sbjct: 120 PKQLKSLTVESQSPSQGLKWSFAAGTNLLSQLGEKIERQSKQKLNEFARELRSFSSIDMS 179

Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
           GRNFGDEGLFFLAESL +NQTAEEVSFAANGITAAG++AFDGVLQSNI LKTL+LSGN +
Sbjct: 180 GRNFGDEGLFFLAESLAFNQTAEEVSFAANGITAAGLRAFDGVLQSNITLKTLDLSGNLV 239

Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
           GDEG KCLCDILV+N+ +E+LQL+S DL DEGAKAIAE+LK NS LRVLELNNNMI+YSG
Sbjct: 240 GDEGAKCLCDILVNNSSIEKLQLNSADLGDEGAKAIAEMLKKNSSLRVLELNNNMIEYSG 299

Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
           F+SLA ALLEN++IR++HLNGNYGGALGANALAK LE NKSLRELHLHGNSIGDEGIR+L
Sbjct: 300 FSSLAGALLENNSIRNIHLNGNYGGALGANALAKALESNKSLRELHLHGNSIGDEGIRSL 359

Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
           M+GLSS KGKL +LDIGNNS++AKGAFHVAEYIK  KSLLW+NLYMNDIGDEGAEKIA A
Sbjct: 360 MTGLSSHKGKLTLLDIGNNSLTAKGAFHVAEYIKKSKSLLWLNLYMNDIGDEGAEKIAVA 419

Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
           LK+NR+I+T+DLGGNNIH  G +AIA+VLKDN VIT+L+L+YNPIG DGAKAL+EVLKFH
Sbjct: 420 LKENRSISTLDLGGNNIHVDGVNAIAQVLKDNLVITTLELSYNPIGPDGAKALAEVLKFH 479

Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
           GNI TLKLGWCQIGA GAEF+AD L+YN TISILDLRANGLRDEGA+ LA+S KVVNEAL
Sbjct: 480 GNIKTLKLGWCQIGAKGAEFIADALKYNTTISILDLRANGLRDEGAQSLARSLKVVNEAL 539

Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           TS+DL FNEIRDDGAFAIAQALK+N+DVAVTSLN+ +NFLTKFGQ
Sbjct: 540 TSLDLGFNEIRDDGAFAIAQALKSNDDVAVTSLNIGSNFLTKFGQ 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558382|ref|XP_002520218.1| leucine rich repeat-containing protein, putative [Ricinus communis] gi|223540710|gb|EEF42273.1| leucine rich repeat-containing protein, putative [Ricinus communis]

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 479/592 (80%), Gaps = 24/592 (4%)

Query: 1   MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRC---------FRLK 51
           MGS ST SLY HPK+S R Q     S  +     LSF    + +             R +
Sbjct: 1   MGSISTHSLYFHPKISLRLQ-----SEPRVHGGLLSFPNTIATSFTTTTTSRRRNFLRFR 55

Query: 52  RLVVKAAARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWK 107
            L V+AAA  +GG R+    RRVYRQSQ ++AL  APV+QIAS V+PAG F+  TFVLWK
Sbjct: 56  SLTVRAAA--DGGSRRAASGRRVYRQSQGESALPNAPVQQIASVVMPAGAFLVVTFVLWK 113

Query: 108 LVEKLLMPKPSRPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRA 163
           LVEK++MPKP R +    K  ++GMNWS  AG+NL  G T K+ RESKQ LNEFAKELR+
Sbjct: 114 LVEKMMMPKPKRAAIVENKSPSKGMNWSFAAGSNLFPGLTAKIDRESKQKLNEFAKELRS 173

Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
           FS VDMSG NFGDEGLFFLAES+ YNQT EEVSFAANGITA G+KAFD VLQSNI LKTL
Sbjct: 174 FSIVDMSGCNFGDEGLFFLAESIAYNQTLEEVSFAANGITAEGVKAFDRVLQSNIVLKTL 233

Query: 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN 283
           NLSGNPIGD+G K L DIL DNAG+E+LQL+S DL DEGAKAIA+LLK N  LRV+ELNN
Sbjct: 234 NLSGNPIGDDGAKSLSDILADNAGIEKLQLNSTDLGDEGAKAIADLLKKNPNLRVIELNN 293

Query: 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
           NMIDYSGFTSLA + LEN+T+RS++LNGNYGGALGANAL+KG+EGNK+LRELHL GNSIG
Sbjct: 294 NMIDYSGFTSLAGSFLENATLRSIYLNGNYGGALGANALSKGIEGNKALRELHLQGNSIG 353

Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
           DEG+RALMSGLSS K KL  LDIGNNS+SAKGAFHVAEYIK  KSL W+N+YMNDIGDEG
Sbjct: 354 DEGVRALMSGLSSSKAKLTHLDIGNNSLSAKGAFHVAEYIKKSKSLFWMNMYMNDIGDEG 413

Query: 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
           AEKIADALKQNR++  IDLGGNNIH+KG S IA+VLKDNS+IT+L++ YNPIG DGAKAL
Sbjct: 414 AEKIADALKQNRSLANIDLGGNNIHAKGISEIAQVLKDNSIITTLEVGYNPIGPDGAKAL 473

Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523
           SEVLKFHGN+  LKLGWCQIGA GAE +AD L+YNNTISILDLR NGLRDEGA CLA+S 
Sbjct: 474 SEVLKFHGNVKALKLGWCQIGAKGAEDIADTLKYNNTISILDLRGNGLRDEGAICLARSL 533

Query: 524 KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
            VVNE LT +DL FNEIRDDGAFAIAQALKANEDV +TSLNLANNFLTKFGQ
Sbjct: 534 TVVNEVLTELDLGFNEIRDDGAFAIAQALKANEDVKITSLNLANNFLTKFGQ 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086512|emb|CBI32101.3| unnamed protein product [Vitis vinifera]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/609 (70%), Positives = 486/609 (79%), Gaps = 41/609 (6%)

Query: 3   STSTISLYSHP-------------------KLSHRAQPVLSRS---------FCQARDAP 34
           STS I LYSHP                   ++SHRA+P   RS         +C    A 
Sbjct: 5   STSAICLYSHPMVLSSSSSQSPNLTFCSDSQISHRARPRNLRSQVLGSSWWGYC----AL 60

Query: 35  LSFALPFSGTRRCFRLKRLVVKAAARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIAS 90
           L  ++  S  R  +R + LV  AA+  +G  R+    RRV++QSQ    L+  PV++IAS
Sbjct: 61  LPTSVYVSSIRH-YRFRTLVTVAASTADGVPRRPVSGRRVFKQSQGQGPLSPVPVREIAS 119

Query: 91  FVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTA----EGMNWSVGAGTNLLSGFTGKL 146
           FVVPA +F + TFVLW+LVEK+L+PK SR S         G+ WS   GTNLL+G T K 
Sbjct: 120 FVVPASLFFAVTFVLWRLVEKILLPKSSRSSSLEKKSSSPGVKWSFAPGTNLLAGLTAKF 179

Query: 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAG 206
            RESKQ LNEFAKE+R+F SVDMSGRNFGDEGLFFLAESL YNQ AEEVSFAANGITAAG
Sbjct: 180 DRESKQKLNEFAKEIRSFGSVDMSGRNFGDEGLFFLAESLAYNQNAEEVSFAANGITAAG 239

Query: 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
           +KAFDGVLQSNI LKTL+LSGNPIGDEG KCLCDIL+DNAG+++LQL+S DL DEGAKAI
Sbjct: 240 LKAFDGVLQSNIVLKTLDLSGNPIGDEGAKCLCDILIDNAGIQKLQLNSADLGDEGAKAI 299

Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326
           AE+LK NS LR++ELNNNMIDYSGFTSL  ALLEN+TIR++HLNGNYGGALG  ALAKGL
Sbjct: 300 AEMLKKNSSLRIVELNNNMIDYSGFTSLGGALLENNTIRNIHLNGNYGGALGVAALAKGL 359

Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
           E NKSLRELHLHGNSIGDEG+R LMSGLSS KGKL +LDIGNN IS++GAFHVAEYIK  
Sbjct: 360 EANKSLRELHLHGNSIGDEGVRVLMSGLSSHKGKLTLLDIGNNEISSRGAFHVAEYIKKA 419

Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446
           KSLLW+NLYMNDIGDEGAEKIADALK+NR+I TIDLGGNNIH+KG S IA VLKDN+VIT
Sbjct: 420 KSLLWLNLYMNDIGDEGAEKIADALKENRSIATIDLGGNNIHAKGVSKIAGVLKDNTVIT 479

Query: 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
           +L+L YNPIG +GAKALSEVLKFHG I TLKLGWCQIGA GAEF+AD L+YN TIS LDL
Sbjct: 480 TLELGYNPIGPEGAKALSEVLKFHGKIKTLKLGWCQIGAKGAEFIADTLKYNTTISTLDL 539

Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566
           RANGLRDEGA CLA+S KVVNEAL S+DL FNEIRD+GAFAIAQALKANEDVAVTSLNLA
Sbjct: 540 RANGLRDEGAVCLARSMKVVNEALASLDLGFNEIRDEGAFAIAQALKANEDVAVTSLNLA 599

Query: 567 NNFLTKFGQ 575
           +NFLTKFGQ
Sbjct: 600 SNFLTKFGQ 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486129|ref|XP_003613352.1| Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula] gi|355514687|gb|AES96310.1| Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/583 (70%), Positives = 478/583 (81%), Gaps = 12/583 (2%)

Query: 3   STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRL----KRLVVKAA 58
           STST+SLYSHP+          +S   A  A     LP    RR F L    +R VVKA 
Sbjct: 4   STSTLSLYSHPQPPQLRLRRRLQSL--AGTAIQFVILPTLNRRRPFGLGAGSRRFVVKAE 61

Query: 59  ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
                    RRVYR+SQ+D  L+ A VKQIA+ V P GVF++ T V+WKLVEKL+ P P 
Sbjct: 62  GTSARASGSRRVYRESQADATLSVASVKQIATNVAPFGVFLALTIVIWKLVEKLVAPTPK 121

Query: 119 RPSKPTAE------GMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGR 172
           +    TAE      G+ WS  AGTNLLS    K+  +SKQ LNEFA+ELR+FS  DMSGR
Sbjct: 122 QSKSTTAESQSASQGLKWSFAAGTNLLSQLGAKIDSQSKQKLNEFARELRSFSYTDMSGR 181

Query: 173 NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD 232
           NFGDEGLFFLAESL +NQ AEEVSFAANGITAAG+KAFDGVLQSNI LKTL+LSGNP+GD
Sbjct: 182 NFGDEGLFFLAESLAFNQNAEEVSFAANGITAAGMKAFDGVLQSNITLKTLDLSGNPVGD 241

Query: 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292
           EG KCLCDIL+ N+ +E+LQL+S DL DEGAKAIAE+LK NS LRVLELNNNMI+YSGFT
Sbjct: 242 EGAKCLCDILMGNSTIEKLQLNSADLGDEGAKAIAEMLKKNSSLRVLELNNNMIEYSGFT 301

Query: 293 SLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352
           SLA ALLEN++IR++HLNGNYGGALG NALAK LEGNKS+RELHLHGNSIGDEGIR+LM+
Sbjct: 302 SLAGALLENNSIRNIHLNGNYGGALGVNALAKALEGNKSIRELHLHGNSIGDEGIRSLMT 361

Query: 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
           GL+S KGKL +LDIGNNS++AKGAF+VA YIK  KSLLW+N+YMNDIGDEGAEK+ADALK
Sbjct: 362 GLTSHKGKLTLLDIGNNSLTAKGAFYVAGYIKKIKSLLWLNIYMNDIGDEGAEKLADALK 421

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
           +NR+ITT+D+GGNNIH+ G  A+A+VLKDNSVIT+L+L+YNPIG DGAKAL+EV+KFHGN
Sbjct: 422 ENRSITTLDMGGNNIHAVGVGAVAKVLKDNSVITTLELSYNPIGPDGAKALAEVIKFHGN 481

Query: 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTS 532
           + TLKLGWCQIGA GAEF+AD L+YN TIS+LDLRANGLRDEGA CLA+S KVVNEALTS
Sbjct: 482 VKTLKLGWCQIGAKGAEFIADALKYNTTISVLDLRANGLRDEGALCLARSLKVVNEALTS 541

Query: 533 IDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           +DL FNEIRDDGAFAIAQALK+NEDVAVTSLN+ +NFLTKFGQ
Sbjct: 542 LDLGFNEIRDDGAFAIAQALKSNEDVAVTSLNIGSNFLTKFGQ 584

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498020|ref|XP_003517853.1| PREDICTED: protein NLRC3-like [Glycine max]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/585 (70%), Positives = 488/585 (83%), Gaps = 11/585 (1%)

Query: 1   MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAAR 60
           M  TST+SLYSHP++  R Q + S +F  A  A  +  LP    RR    +  VV+A++ 
Sbjct: 1   MAFTSTLSLYSHPQVRLRCQRLQSLAFTAAGVAQFA-PLPPLNCRRTCSPRSFVVRASSS 59

Query: 61  PEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPK 116
            EG R +    RRVYRQSQ++  L++APVKQIA+ V P   F + TFV+WKLVEKLL+P 
Sbjct: 60  VEGSRARAGGSRRVYRQSQANAPLSSAPVKQIANVVAPVAAFFALTFVIWKLVEKLLVPT 119

Query: 117 PSR------PSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
           P +       S+  ++G+ WS  AGTNLLS    K+ R+S+Q LNEFA+ELR+F S+DMS
Sbjct: 120 PKQLKYSTGESQSPSQGLKWSFAAGTNLLSQLGEKIERQSRQKLNEFARELRSFPSIDMS 179

Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
           GRNFGDEGLFFLAESL +NQ AEEVSFAANGITAAG++AFDGVLQSNI LKTL+LSGN +
Sbjct: 180 GRNFGDEGLFFLAESLAFNQIAEEVSFAANGITAAGLRAFDGVLQSNITLKTLDLSGNLV 239

Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
           GDEG KCLCDILV+N+ +E+LQL+S DL D GAKAIAE+LK NS LRVLELNNNMI+YSG
Sbjct: 240 GDEGAKCLCDILVNNSSIEKLQLNSADLGDVGAKAIAEMLKKNSSLRVLELNNNMIEYSG 299

Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
           F+SLA ALLEN++IR++HLNGNYGGALGANALAK LE NKS+RELHLHGNSIGDEGI +L
Sbjct: 300 FSSLAGALLENNSIRNIHLNGNYGGALGANALAKALESNKSIRELHLHGNSIGDEGICSL 359

Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
           M+GLSS KGKL +LDIGNNS++AKG+FHVAEYI+  ++LLW+NLYMNDIGDEGAEKIA A
Sbjct: 360 MTGLSSHKGKLTLLDIGNNSLTAKGSFHVAEYIRKSRNLLWLNLYMNDIGDEGAEKIAVA 419

Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
           LK+NR+I+T+DLGGNNIH  G +AIA+VLKDN VIT+L+L+YNPIG DGAKAL+EVLKFH
Sbjct: 420 LKENRSISTLDLGGNNIHVDGVNAIAQVLKDNLVITTLELSYNPIGPDGAKALAEVLKFH 479

Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
           GNI TLKLGWCQIGA GAE +AD L+YN TISILDLRANGLRDEGA+ LA+S KVVNEAL
Sbjct: 480 GNIKTLKLGWCQIGAKGAECIADALKYNTTISILDLRANGLRDEGAQSLARSLKVVNEAL 539

Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           TS+DL FNEIRDDGAFAIAQALK+N+DVAVTSLN+A+NFLTKFGQ
Sbjct: 540 TSLDLGFNEIRDDGAFAIAQALKSNDDVAVTSLNIASNFLTKFGQ 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473416|ref|XP_002266381.2| PREDICTED: protein NLRC3-like [Vitis vinifera]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/578 (72%), Positives = 475/578 (82%), Gaps = 22/578 (3%)

Query: 15  LSHRAQPVLSRS---------FCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGR 65
           +SHRA+P   RS         +C     P S    +  + R +R + LV  AA+  +G  
Sbjct: 90  ISHRARPRNLRSQVLGSSWWGYCAL--LPTSV---YVSSIRHYRFRTLVTVAASTADGVP 144

Query: 66  RQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPS 121
           R+    RRV++QSQ    L+  PV++IASFVVPA +F + TFVLW+LVEK+L+PK SR S
Sbjct: 145 RRPVSGRRVFKQSQGQGPLSPVPVREIASFVVPASLFFAVTFVLWRLVEKILLPKSSRSS 204

Query: 122 KPTA----EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDE 177
                    G+ WS   GTNLL+G T K  RESKQ LNEFAKE+R+F SVDMSGRNFGDE
Sbjct: 205 SLEKKSSSPGVKWSFAPGTNLLAGLTAKFDRESKQKLNEFAKEIRSFGSVDMSGRNFGDE 264

Query: 178 GLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237
           GLFFLAESL YNQ AEEVSFAANGITAAG+KAFDGVLQSNI LKTL+LSGNPIGDEG KC
Sbjct: 265 GLFFLAESLAYNQNAEEVSFAANGITAAGLKAFDGVLQSNIVLKTLDLSGNPIGDEGAKC 324

Query: 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297
           LCDIL+DNAG+++LQL+S DL DEGAKAIAE+LK NS LR++ELNNNMIDYSGFTSL  A
Sbjct: 325 LCDILIDNAGIQKLQLNSADLGDEGAKAIAEMLKKNSSLRIVELNNNMIDYSGFTSLGGA 384

Query: 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSR 357
           LLEN+TIR++HLNGNYGGALG  ALAKGLE NKSLRELHLHGNSIGDEG+R LMSGLSS 
Sbjct: 385 LLENNTIRNIHLNGNYGGALGVAALAKGLEANKSLRELHLHGNSIGDEGVRVLMSGLSSH 444

Query: 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
           KGKL +LDIGNN IS++GAFHVAEYIK  KSLLW+NLYMNDIGDEGAEKIADALK+NR+I
Sbjct: 445 KGKLTLLDIGNNEISSRGAFHVAEYIKKAKSLLWLNLYMNDIGDEGAEKIADALKENRSI 504

Query: 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477
            TIDLGGNNIH+KG S IA VLKDN+VIT+L+L YNPIG +GAKALSEVLKFHG I TLK
Sbjct: 505 ATIDLGGNNIHAKGVSKIAGVLKDNTVITTLELGYNPIGPEGAKALSEVLKFHGKIKTLK 564

Query: 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537
           LGWCQIGA GAEF+AD L+YN TIS LDLRANGLRDEGA CLA+S KVVNEAL S+DL F
Sbjct: 565 LGWCQIGAKGAEFIADTLKYNTTISTLDLRANGLRDEGAVCLARSMKVVNEALASLDLGF 624

Query: 538 NEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           NEIRD+GAFAIAQALKANEDVAVTSLNLA+NFLTKFGQ
Sbjct: 625 NEIRDEGAFAIAQALKANEDVAVTSLNLASNFLTKFGQ 662

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843864|ref|XP_002889813.1| EMB2004 [Arabidopsis lyrata subsp. lyrata] gi|297335655|gb|EFH66072.1| EMB2004 [Arabidopsis lyrata subsp. lyrata]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/581 (70%), Positives = 477/581 (82%), Gaps = 10/581 (1%)

Query: 3   STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLS----FALPFSGTRRCFRLKRLVVKAA 58
           STS+++L+S PK S       S    +   + +S       P     R  RL    +KAA
Sbjct: 5   STSSLNLHSLPKASSGLSQWRSGFRYELLGSSVSRNRLLVSPVVILHRSPRLP--AIKAA 62

Query: 59  ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
              +GG ++ RVY++SQ+ +    A ++QIAS ++P G F   TFVLWK+VEK + PK  
Sbjct: 63  YNSDGGSKRSRVYKESQAASGFPNAKLQQIASSLLPLGSFAVVTFVLWKVVEKFMSPKSP 122

Query: 119 RPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
           + +    K + +G+ WS+GAGTNLL GF  K+ RE+KQ LNEFAKELR+F SVDMSG NF
Sbjct: 123 KTAAGENKSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMSGCNF 182

Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
           GDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPIGDEG
Sbjct: 183 GDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKVLNLSGNPIGDEG 242

Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
            K LC  L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSGFTSL
Sbjct: 243 AKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSL 302

Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
           A ALLEN+TIR+LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG RALM+GL
Sbjct: 303 AGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGL 362

Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
           SS KGKLA+LD+GNNSISAKGAF+VAEYIK  KSL+W+NLYMNDIGDEGAEKIADALKQN
Sbjct: 363 SSHKGKLALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADALKQN 422

Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
           R+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFHGN+ 
Sbjct: 423 RSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVK 482

Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
           TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEALTS+D
Sbjct: 483 TLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVD 542

Query: 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           L FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQ
Sbjct: 543 LGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQ 583

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18391166|ref|NP_563871.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|15810395|gb|AAL07085.1| unknown protein [Arabidopsis thaliana] gi|20258921|gb|AAM14154.1| unknown protein [Arabidopsis thaliana] gi|332190466|gb|AEE28587.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/585 (70%), Positives = 476/585 (81%), Gaps = 18/585 (3%)

Query: 3   STSTISLYSHPKLSHR--------AQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLV 54
           STS+++L+S PK S             +L  S  + R     F  P     R  RL    
Sbjct: 5   STSSLNLHSLPKASSGLGQWKSGFRYELLGSSVSRNR----LFVSPVVIHHRSPRLP--A 58

Query: 55  VKAAARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLM 114
           +KAA   +GG ++ RVY++SQ+ +    A V+QIAS V+P G F   TFVLWK+V K + 
Sbjct: 59  IKAAYNSDGGSKRSRVYKESQAASGFPNAKVQQIASSVLPLGSFAVVTFVLWKVVGKFMS 118

Query: 115 PKPSRPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
           PK  + S      + +G+ WS+GAGTNLL GF  K+ RE+KQ LNEFAKELR+F SVDMS
Sbjct: 119 PKSPKTSAGENNSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMS 178

Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
           G NFGDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPI
Sbjct: 179 GCNFGDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKILNLSGNPI 238

Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
           GDEG K LC  L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSG
Sbjct: 239 GDEGAKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSG 298

Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
           FTSLA ALLEN+TIR+LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG RAL
Sbjct: 299 FTSLAGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRAL 358

Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
           M+GLSS KGK+A+LD+GNNSISAKGAF+VAEYIK  KSL+W+NLYMNDIGDEGAEKIAD+
Sbjct: 359 MAGLSSHKGKVALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADS 418

Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
           LKQNR+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFH
Sbjct: 419 LKQNRSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFH 478

Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
           GN+ TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEAL
Sbjct: 479 GNVKTLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEAL 538

Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           TS+DL FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQ
Sbjct: 539 TSVDLGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQ 583

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|258678027|gb|ACV87735.1| chloroplast envelope protein 1 [Nicotiana benthamiana]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/595 (67%), Positives = 478/595 (80%), Gaps = 21/595 (3%)

Query: 1   MGSTSTISLYSHP---------KLSHRAQPVLSRSFCQARDAPLSFALPFSGT---RRCF 48
           MGS ST+SL SH          KL       L+ S+      P+S +L FS +    +C 
Sbjct: 1   MGSASTLSLCSHSTVNFEFYRRKLGFGRDQALNSSYSSYVLLPISPSLYFSSSCSRSKCL 60

Query: 49  RLKRLVVKAAARPEGGRRQRR----VYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFV 104
           +LKR++V+A++    G R+      VY++SQ+     T PV QIASFVVPAG FV  +FV
Sbjct: 61  QLKRVIVRASSSSSTGSRRSSSSRRVYKESQAQPP--TLPVDQIASFVVPAGAFVVISFV 118

Query: 105 LWKLVEKLLMPKPSRPS---KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKEL 161
           LWKLVEK+L PKP+R S     + EG+ W +  GTNLL GF  K+ RESK  LNEFAKEL
Sbjct: 119 LWKLVEKILQPKPARTSAEESKSTEGVKWFIAPGTNLLPGFGEKIERESKLRLNEFAKEL 178

Query: 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221
           R+FS VDMSGRNFG++GL FLAESL YNQTAEEV+FAANGITA G+KAFDG+LQSNIALK
Sbjct: 179 RSFSIVDMSGRNFGNDGLIFLAESLAYNQTAEEVNFAANGITAEGLKAFDGILQSNIALK 238

Query: 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLEL 281
           TLNLSGN IGDEG KCLC+IL +N+G+++LQL+S  L DEGAKAI E+LK NS LRV+EL
Sbjct: 239 TLNLSGNAIGDEGAKCLCEILANNSGIQKLQLNSTGLGDEGAKAIGEMLKTNSTLRVVEL 298

Query: 282 NNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
           NNN IDYSGF+ LA +LLEN +++SLHLNGNYGG LGA ALAKGLEGNKSLREL+L GNS
Sbjct: 299 NNNQIDYSGFSGLAGSLLENKSLQSLHLNGNYGGPLGAAALAKGLEGNKSLRELYLQGNS 358

Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           IGDEG+RAL+SGLSSRKGKL +LD+ NNSI+A+GA+HVAEY K  KSLLW+NLYMNDI D
Sbjct: 359 IGDEGVRALISGLSSRKGKLVLLDMANNSITARGAYHVAEYAKKSKSLLWLNLYMNDIKD 418

Query: 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461
           EGAEKIA+ALK+NR+IT IDLGGN+IH+KG SA+A VLKDNSVITSL+L YNPIG +GAK
Sbjct: 419 EGAEKIAEALKENRSITNIDLGGNDIHAKGISALAEVLKDNSVITSLELGYNPIGPEGAK 478

Query: 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
           AL+EVLKFHGN+  L LGWCQIGA GAE +ADML+YN+TIS LDLRANGLRDEGA CLA+
Sbjct: 479 ALAEVLKFHGNVKDLMLGWCQIGAKGAEAIADMLKYNSTISNLDLRANGLRDEGAICLAR 538

Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQV 576
           S KVVNEALT+++L FNEIRD+GAF+IAQALKANEDV +TS+NL +NFLTK GQ 
Sbjct: 539 SLKVVNEALTTLNLGFNEIRDEGAFSIAQALKANEDVRLTSINLTSNFLTKLGQT 593

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452044|ref|XP_004143770.1| PREDICTED: LOW QUALITY PROTEIN: protein NLRC3-like [Cucumis sativus]

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/581 (68%), Positives = 467/581 (80%), Gaps = 13/581 (2%)

Query: 3   STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFA----LPFSGTRRCFRLKRLVVKAA 58
           STSTIS  SHPK+  R   + S             A    L  +   R FRL+ LV+KA 
Sbjct: 5   STSTISFCSHPKIFLRLHSLGSPRVGFGASGLNYHANGAFLSVTHRTRGFRLRNLVLKAT 64

Query: 59  ARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLM 114
            R + G R+    RRVYR SQ+ ++   APVKQ+AS V+PAGV V  TFVLWKLVE+L++
Sbjct: 65  LRSDSGSRRAATSRRVYRDSQTQSSSLVAPVKQLASTVLPAGVLVVFTFVLWKLVERLMV 124

Query: 115 PKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
            K  + S       ++  GAG NL      K+ RE+K  LN+FAKELR F SVDM+ RNF
Sbjct: 125 QKSDKSSSSVKNKWSF--GAGINLFPDLAAKVDREAKLKLNDFAKELRTFRSVDMTARNF 182

Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
           GDEGLFFLAESLGYNQT EEV+F+ANGITA GIKAFDGVLQSNI LKTL+LSGNPIGD+G
Sbjct: 183 GDEGLFFLAESLGYNQTVEEVNFSANGITAEGIKAFDGVLQSNIILKTLDLSGNPIGDDG 242

Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
           VK LCD+LV+N+ +E L+L+S D+ DEGAKA++E+LKNNS LR++ELNNNMIDYSGFTSL
Sbjct: 243 VKTLCDLLVNNSSIETLRLNSTDVGDEGAKAVSEMLKNNSSLRIIELNNNMIDYSGFTSL 302

Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
               LEN+TIR++HL GNYGGALGANALAKGLEGNKSLRELHL+GNSIGDEG+R L+SGL
Sbjct: 303 X---LENNTIRNIHLTGNYGGALGANALAKGLEGNKSLRELHLNGNSIGDEGVRTLISGL 359

Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
           SSRKGKLA+LDIGNNSI+AKGAFHVAE++K  KSL+ +NLYMNDIGDEGAEKIAD+LKQN
Sbjct: 360 SSRKGKLALLDIGNNSITAKGAFHVAEFVKRTKSLVLLNLYMNDIGDEGAEKIADSLKQN 419

Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
           RTI T+DLGGNNIH +G S +A+ LKDN  IT+L+++YNPIG +GA+ALSEVLKFHGN+ 
Sbjct: 420 RTIKTLDLGGNNIHGEGISKVAQALKDNDTITTLEISYNPIGPEGAEALSEVLKFHGNVK 479

Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
            LKLGWC+IG  GAEF+A+ L+YN TIS+LDLR NGLRDEGA CLA+S KVVNEALTS+D
Sbjct: 480 NLKLGWCKIGPKGAEFIAETLKYNTTISVLDLRGNGLRDEGATCLARSLKVVNEALTSLD 539

Query: 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
           L FNEIRD GAFAIAQALKAN D+AVTSLNLANNFLTKFGQ
Sbjct: 540 LGFNEIRDPGAFAIAQALKANGDIAVTSLNLANNFLTKFGQ 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	600
TAIR|locus:2194604	605	emb2004 "embryo defective 2004	0.951	0.943	0.664	5.5e-196
UNIPROTKB|Q7RTR2	1065	NLRC3 "Protein NLRC3" [Homo sa	0.708	0.399	0.343	1.6e-51
MGI|MGI:2444070	1064	Nlrc3 "NLR family, CARD domain	0.691	0.390	0.319	3.1e-46
RGD|2321956	456	LOC100360501 "ribonuclease inh	0.62	0.815	0.269	2.3e-28
RGD|621398	456	Rnh1 "ribonuclease/angiogenin	0.631	0.831	0.264	3.7e-28
MGI|MGI:1195456	456	Rnh1 "ribonuclease/angiogenin	0.601	0.791	0.266	1.1e-26
UNIPROTKB|P10775	456	RNH1 "Ribonuclease inhibitor"	0.641	0.844	0.263	1.1e-26
UNIPROTKB|P13489	461	RNH1 "Ribonuclease inhibitor"	0.65	0.845	0.260	1e-25
RGD|1562269	953	Nod1 "nucleotide-binding oligo	0.375	0.236	0.330	1.5e-24
ZFIN|ZDB-GENE-110913-19	1252	si:dkey-156k2.3 "si:dkey-156k2	0.61	0.292	0.262	8.1e-24

TAIR|locus:2194604 emb2004 "embryo defective 2004" [Arabidopsis thaliana (taxid:3702)]

 Score = 1898 (673.2 bits), Expect = 5.5e-196, P = 5.5e-196
 Identities = 386/581 (66%), Positives = 445/581 (76%)

Query:     3 STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLS----FALPFSGTRRCFRLKRLVVKAA 58
             STS+++L+S PK S       S    +   + +S    F  P     R  RL    +KAA
Sbjct:     5 STSSLNLHSLPKASSGLGQWKSGFRYELLGSSVSRNRLFVSPVVIHHRSPRLP--AIKAA 62

Query:    59 ARPEGGXXXXXXXXXXXXDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
                +GG             +    A V+QIAS V+P G F   TFVLWK+V K + PK  
Sbjct:    63 YNSDGGSKRSRVYKESQAASGFPNAKVQQIASSVLPLGSFAVVTFVLWKVVGKFMSPKSP 122

Query:   119 RPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
             + S      + +G+ WS+GAGTNLL GF  K+ RE+KQ LNEFAKELR+F SVDMSG NF
Sbjct:   123 KTSAGENNSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMSGCNF 182

Query:   175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
             GDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPIGDEG
Sbjct:   183 GDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKILNLSGNPIGDEG 242

Query:   235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
              K LC  L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSGFTSL
Sbjct:   243 AKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSL 302

Query:   295 AEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGL 354
             A ALLEN+TIR+LH                     KSLRELHLHGNSIGDEG RALM+GL
Sbjct:   303 AGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGL 362

Query:   355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
             SS KGK+A+LD+GNNSISAKGAF+VAEYIK  KSL+W+NLYMNDIGDEGAEKIAD+LKQN
Sbjct:   363 SSHKGKVALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADSLKQN 422

Query:   415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
             R+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFHGN+ 
Sbjct:   423 RSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVK 482

Query:   475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
             TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEALTS+D
Sbjct:   483 TLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVD 542

Query:   535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
             L FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQ
Sbjct:   543 LGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQ 583

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q7RTR2 NLRC3 "Protein NLRC3" [Homo sapiens (taxid:9606)]

 Score = 544 (196.6 bits), Expect = 1.6e-51, P = 1.6e-51
 Identities = 148/431 (34%), Positives = 220/431 (51%)

Query:   150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
             S+  L     +L     + +    F D  +  L   L G +   +++S A N I+  G K
Sbjct:   625 SQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAK 684

Query:   209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
             A    L  N +L +L+L GN IG +G K L D L  N  +  L L    +RD+GA+++AE
Sbjct:   685 ALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAE 744

Query:   269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXX 328
              L +N  L +L L  N I   G   +A+AL +N +++ L                     
Sbjct:   745 ALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKV 804

Query:   329 XKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
              + L  L L  NSI D G+ ALM  L + +  L+ L +  NSIS +GA  +A  +    +
Sbjct:   805 NQGLESLDLQSNSISDAGVAALMGALCTNQTLLS-LSLRENSISPEGAQAIAHALCANST 863

Query:   389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
             L  ++L  N + D+GA  IA A+++NRT+T++ L  N I +  A A+ + L+ N  +TSL
Sbjct:   864 LKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSL 923

Query:   449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
             DL  N IG DGA A++  LK +  +  L L    IGASGA+ + + L  N T+ ILDLR 
Sbjct:   924 DLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRG 983

Query:   509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
             N +   GAK LA + KV N +L  ++L  N +  DGA  IA AL  N    +  +NL  N
Sbjct:   984 NAIGVAGAKALANALKV-NSSLRRLNLQENSLGMDGAICIATALSGNH--RLQHINLQGN 1040

Query:   569 FLTKFG-QVIS 578
              +   G ++IS
Sbjct:  1041 HIGDSGARMIS 1051

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=IDA

GO:0042110 "T cell activation" evidence=IEP

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2444070 Nlrc3 "NLR family, CARD domain containing 3" [Mus musculus (taxid:10090)]

 Score = 495 (179.3 bits), Expect = 3.1e-46, P = 3.1e-46
 Identities = 134/420 (31%), Positives = 208/420 (49%)

Query:   150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
             S+  L     +L    S+ +    F D  +  L   L G +    ++S A N I   G K
Sbjct:   624 SQHVLQSLLPQLLYCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAK 683

Query:   209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
             A    L  N +L TL+L  N IG  G K L D L  N  +  L L S  ++D+G   +AE
Sbjct:   684 ALARSLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAE 743

Query:   269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXX 328
              L +N  + +L+L  N+I   G   +A+AL +N ++++L                     
Sbjct:   744 ALVSNQTISMLQLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKV 803

Query:   329 XKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
              + L  L L  NSI D G+  LM  L S +  L+ L++  NSIS +GA  + + +    +
Sbjct:   804 NQILENLDLQSNSISDMGVTVLMRALCSNQ-TLSSLNLRENSISPEGAQALTQALCRNNT 862

Query:   389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
             L  ++L  N + D GA+ IA A+ +N ++T + L  N I +  A A+ + L+ N  +T+L
Sbjct:   863 LKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTL 922

Query:   449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
             DL  N IG +GA +++  LK +  +  L L    IG+ GA+ + + L  N T+ ILDLR 
Sbjct:   923 DLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRG 982

Query:   509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
             N +   GAK LA + K+ N +L  ++L  N +  DGA  +A AL  N    +  +NL  N
Sbjct:   983 NDVGAAGAKALANALKL-NSSLRRLNLQENSLGMDGAIFVASALSENH--GLHHINLQGN 1039

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0042110 "T cell activation" evidence=ISS

RGD|2321956 LOC100360501 "ribonuclease inhibitor-like" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 2.3e-28, P = 2.3e-28
 Identities = 102/379 (26%), Positives = 180/379 (47%)

Query:   163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
             A + + +     GD G+  + + L  N T   +++S     +T AG      VL+S   L
Sbjct:    52 ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110

Query:   221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
             + L+L+ NP+GDEG+K LC+ L D    +E+LQL   +L     + +A +L+     + L
Sbjct:   111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170

Query:   280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
              L+NN    +G  +L + L +++  + SL                       SL+EL L 
Sbjct:   171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230

Query:   339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
              N +G+ GI AL SGL     +L  L + +  ++A+G   +   ++  +SL  ++L  N+
Sbjct:   231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290

Query:   399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
             + DEGA+ + ++L +    + ++ +   ++ +        VL  N  +  L ++ NP+G 
Sbjct:   291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350

Query:   458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
              G   L + L +   +   L LG C +  SG   +A +L  N ++  LDL  N + D G 
Sbjct:   351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDTGV 410

Query:   517 KCLAQSFKVVNEALTSIDL 535
               L +S K  + AL  + L
Sbjct:   411 LQLLESLKQPSCALQQLVL 429

GO:0005737 "cytoplasm" evidence=IEA

GO:0008428 "ribonuclease inhibitor activity" evidence=IEA

GO:0032311 "angiogenin-PRI complex" evidence=IEA

GO:0045765 "regulation of angiogenesis" evidence=IEA

RGD|621398 Rnh1 "ribonuclease/angiogenin inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 329 (120.9 bits), Expect = 3.7e-28, P = 3.7e-28
 Identities = 103/390 (26%), Positives = 185/390 (47%)

Query:   163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
             A + + +     GD G+  + + L  N T   +++S     +T AG      VL+S   L
Sbjct:    52 ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110

Query:   221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
             + L+L+ NP+GDEG+K LC+ L D    +E+LQL   +L     + +A +L+     + L
Sbjct:   111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170

Query:   280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
              L+NN    +G  +L + L +++  + SL                       SL+EL L 
Sbjct:   171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230

Query:   339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
              N +G+ GI AL SGL     +L  L + +  ++A+G   +   ++  +SL  ++L  N+
Sbjct:   231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290

Query:   399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
             + DEGA+ + ++L +    + ++ +   ++ +        VL  N  +  L ++ NP+G 
Sbjct:   291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350

Query:   458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
              G   L + L +   +   L LG C +  SG   +A +L  N ++  LDL  N + D G 
Sbjct:   351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDNGV 410

Query:   517 KCLAQSFK---VVNEALTSIDLAF-NEIRD 542
               L +S K    + + L   D+ + +E+ D
Sbjct:   411 LQLLESLKQPSCILQQLVLYDIYWTDEVED 440

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008428 "ribonuclease inhibitor activity" evidence=ISO

GO:0032311 "angiogenin-PRI complex" evidence=ISO

GO:0045765 "regulation of angiogenesis" evidence=ISO

MGI|MGI:1195456 Rnh1 "ribonuclease/angiogenin inhibitor 1" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 98/368 (26%), Positives = 174/368 (47%)

Query:   163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
             A + + +     GD G+  + + L  N T   +++S    G+T AG     G+L+S   L
Sbjct:    52 ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 110

Query:   221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
             + L+L+ NP+GD G+K LC+ L D    +E+LQL   +L     + +A +L+  +  + L
Sbjct:   111 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 170

Query:   280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
              L+NN +   G   L + L +++  + SL                       SL+EL L 
Sbjct:   171 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 230

Query:   339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
              N +G+ GI AL  GL     KL  L +    I+A+G   +   ++  +SL  ++L  N+
Sbjct:   231 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 290

Query:   399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
             + DEGA  + ++L +    + ++ +   ++ +        VL  +  +  L ++ NP+G 
Sbjct:   291 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 350

Query:   458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
             +G + L + L     +   L LG C +  SG   +A++L  N ++  LDL  N +   G 
Sbjct:   351 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 410

Query:   517 KCLAQSFK 524
               L +S K
Sbjct:   411 LQLLESLK 418

GO:0005737 "cytoplasm" evidence=IEA

GO:0008428 "ribonuclease inhibitor activity" evidence=ISO

GO:0032311 "angiogenin-PRI complex" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0045765 "regulation of angiogenesis" evidence=ISO

UNIPROTKB|P10775 RNH1 "Ribonuclease inhibitor" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 104/395 (26%), Positives = 182/395 (46%)

Query:   150 SKQTLNEFAKELRAFSSVD---MSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITA 204
             +++   +    LRA  S+    +     GD G+  + + L  + T   +++S     +T 
Sbjct:    36 TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGL-QSPTCKIQKLSLQNCSLTE 94

Query:   205 AGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGA 263
             AG       L+S   L+ L+LS NP+GD G++ LC+ L+D    +E+LQL    L     
Sbjct:    95 AGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASC 154

Query:   264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXX 322
             + +A +L+    L+ L ++NN I  +G   L + L +++  + +L               
Sbjct:   155 EPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDL 214

Query:   323 XXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
                     SLREL L  N +GD GI  L  GL S   +L  L +    I+A G   +   
Sbjct:   215 CGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRV 274

Query:   383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD 441
             ++  ++L  ++L  N +GDEGA  + ++L Q    + ++ +   ++ +     ++ +L  
Sbjct:   275 LQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQ 334

Query:   442 NSVITSLDLAYNPIGADGAKALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNT 500
             N  +  L L+ N +G  G + L + L   G  +  L LG C++  SG   +A +L  N +
Sbjct:   335 NKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRS 394

Query:   501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
             +  LDL  N + D G   L  S +    AL  + L
Sbjct:   395 LRELDLSNNCVGDPGVLQLLGSLEQPGCALEQLVL 429

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|P13489 RNH1 "Ribonuclease inhibitor" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 103/396 (26%), Positives = 168/396 (42%)

Query:   183 AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242
             AE L   Q  + V     G+T A  K     L+ N AL  LNL  N +GD GV C+   L
Sbjct:    21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80

Query:   243 -VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE- 300
                +  +++L L +  L   G   ++  L+    L+ L L++N++  +G   L E LL+ 
Sbjct:    81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140

Query:   301 NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGK 360
                +  L                         +EL +  N I + G+R L  GL     +
Sbjct:   141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

Query:   361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG-AEKIADALKQNRTITT 419
             L  L + +  +++     +   + +  SL  + L  N +GD G AE     L  +  + T
Sbjct:   201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query:   420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKL 478
             + +    I +KG   + RVL+    +  L LA N +G +GA+ L E L   G  + +L +
Sbjct:   261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query:   479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538
               C   A+     + +L  N  +  L +  N L D G + L Q        L  + LA  
Sbjct:   321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query:   539 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
             ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct:   381 DVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414

GO:0006402 "mRNA catabolic process" evidence=NAS

GO:0008428 "ribonuclease inhibitor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045765 "regulation of angiogenesis" evidence=IDA

GO:0032311 "angiogenin-PRI complex" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

RGD|1562269 Nod1 "nucleotide-binding oligomerization domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 76/230 (33%), Positives = 123/230 (53%)

Query:   335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
             L L  N++ D G+R L    S    +L V+ +  N I+  G   + E +   K + ++ L
Sbjct:   708 LDLDNNNLNDYGVRELQPCFS----RLTVIRLSVNQITDMGVKVLCEELTKYKIVTFLGL 763

Query:   395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
             Y N I D GA  +A  L + R +T + LG N I S+G   +A+ +K+++ I  + +  N 
Sbjct:   764 YNNQITDIGARYVAQILDECRGLTHLKLGKNRITSEGGRCVAQAVKNSTSIVEVGMWGNQ 823

Query:   455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514
             IG +GAKA +E L+ H ++ TL L +  I   G + +A  L+ N T++I+ L  N L DE
Sbjct:   824 IGDEGAKAFAEALRDHPSLTTLSLAFNGISPEGGKSLAQALKQNTTLTIIWLTKNELNDE 883

Query:   515 GAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
              A+C A+  +V N+ L  + L  N I  +G   +A+AL+ N  +    LN
Sbjct:   884 AAECFAEMLRV-NQTLKHLWLIQNHITAEGTAQLARALQKNTTITEICLN 932

GO:0002606 "positive regulation of dendritic cell antigen processing and presentation" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0016045 "detection of bacterium" evidence=IEA;ISO

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

GO:0032755 "positive regulation of interleukin-6 production" evidence=IEA;ISO

GO:0032760 "positive regulation of tumor necrosis factor production" evidence=IEA;ISO

GO:0032874 "positive regulation of stress-activated MAPK cascade" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA;ISO

GO:0042228 "interleukin-8 biosynthetic process" evidence=IEA;ISO

GO:0042742 "defense response to bacterium" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA;ISO

GO:0046330 "positive regulation of JNK cascade" evidence=IEA;ISO

GO:0050700 "CARD domain binding" evidence=IEA;ISO

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA;ISO

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA;ISO

ZFIN|ZDB-GENE-110913-19 si:dkey-156k2.3 "si:dkey-156k2.3" [Danio rerio (taxid:7955)]

 Score = 307 (113.1 bits), Expect = 8.1e-24, P = 8.1e-24
 Identities = 99/377 (26%), Positives = 178/377 (47%)

Query:   202 ITAAGIKAFDGVLQS-NIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLR 259
             +T    ++    LQS N  L+ L+LS N + D GVK L D L   +  +E L+L    L 
Sbjct:   699 LTTQSCESLSSALQSSNCVLRELDLSNNDLQDSGVKLLSDGLKSPDCKLETLRLVMCKLT 758

Query:   260 DEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXX 317
                 ++++  L++ N +LR L+L+NN +  SG   L++ L   N  + +L          
Sbjct:   759 VRSCESLSSALQSSNCVLRELDLSNNDLQDSGVKLLSDGLKSPNCKLETLRFVLCNITAD 818

Query:   318 XXXXXXXXXXXXKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376
                            LREL L  N + D G++ L  GL S   KL  L +   +++ +  
Sbjct:   819 SCESLSSALQSSNCVLRELDLSNNGLQDSGVKLLSDGLKSPDFKLETLSLQGCNLTTQSF 878

Query:   377 FHVAEYIKNCKSLLW-INLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASA 434
               ++  +++   +L  ++L  ND+     + ++D LK  N  + T+ L    +  +   +
Sbjct:   879 ESLSSALQSSNCVLRELDLSNNDLQHSAVKLLSDGLKSPNCKLETLRLQWCKLTVQSCES 938

Query:   435 IARVLKD-NSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVA 492
             ++  L+  N V+  LDL+ N +   G K  S+ LK  +  + TL+L  C +     E ++
Sbjct:   939 LSSALQSSNCVLRELDLSNNDLQDSGVKLHSDGLKTVNSKLETLRLAMCNLTVQCCESLS 998

Query:   493 DMLRYNN-TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
               L+ +N  +  LDL  N L+D G K L+   K +N  L ++ L+   + ++G   ++ A
Sbjct:   999 SALQSSNYVLRELDLSNNDLQDSGVKKLSDGLKSLNCKLETLRLSGCMVTEEGCGFLSSA 1058

Query:   552 LKANEDVAVTSLNLANN 568
             L +N    +  L+L+ N
Sbjct:  1059 LTSNPS-HLRELDLSYN 1074

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__1118__AT1G10510.1 annotation not avaliable (605 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	600
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-37
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-35
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-30
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-27
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-08
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	2e-07
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	5e-06
smart00368	28	smart00368, LRR_RI, Leucine rich repeat, ribonucle	4e-04

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score =  139 bits (353), Expect = 6e-37
 Identities = 85/291 (29%), Positives = 133/291 (45%), Gaps = 32/291 (10%)

Query: 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAA---------------- 199
           E   +L     + + G   G+E    LA +L    + +E+  +                 
Sbjct: 17  ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76

Query: 200 --------------NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 245
                         N +   G    + +L+S+ +L+ L L+ N +GD G++ L   L D 
Sbjct: 77  LTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNGLGDRGLRLLAKGLKDL 135

Query: 246 A-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI 304
              +E+L L    L     +A+A+ L+ N  L+ L L NN I  +G  +LAE L  N  +
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
             L LN N     GA+ALA+ L   KSL  L+L  N++ D G  AL S L S    L  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR 415
            +  N I+  GA  +AE +   +SLL ++L  N  G+EGA+ +A++L +  
Sbjct: 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score =  134 bits (338), Expect = 6e-35
 Identities = 100/296 (33%), Positives = 148/296 (50%), Gaps = 7/296 (2%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVER 250
           + +    N +     KA    L+   +LK L LS N  G    G++ L   L    G++ 
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85

Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHL 309
           L LS   L  +G   +  LL+++S L+ L+LNNN +   G   LA+ L +    +  L L
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSS-LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
             N        ALAK L  N+ L+EL+L  N IGD GIRAL  GL +    L VLD+ NN
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNN 203

Query: 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIH 428
            ++ +GA  +AE + + KSL  +NL  N++ D GA  +A AL   N ++ T+ L  N+I 
Sbjct: 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQI 483
             GA  +A VL +   +  LDL  N  G +GA+ L+E L      + +L +     
Sbjct: 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score =  120 bits (304), Expect = 2e-30
 Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENSTI 304
           ++ L+L    L +E AKA+A  L+    L+ L L+ N    I   G  SL + L +   +
Sbjct: 25  LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR-GLQSLLQGLTKGCGL 83

Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
           + L L+ N  G  G   L + L  + SL+EL L+ N +GD G+R L  GL      L  L
Sbjct: 84  QELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142

Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424
            +G N +       +A+ ++  + L  +NL  N IGD G   +A+ LK N  +  +DL  
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202

Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN--TLKLGWCQ 482
           N +  +GASA+A  L     +  L+L  N +   GA AL+  L    NI+  TL L    
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL-SPNISLLTLSLSCND 261

Query: 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522
           I   GA+ +A++L    ++  LDLR N   +EGA+ LA+S
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score =  112 bits (283), Expect = 2e-27
 Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 6/277 (2%)

Query: 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG--DEGIRALMSGLSSRKGKLAV 363
            L L GN  G   A ALA  L    SL+EL L  N  G    G+++L+ GL+     L  
Sbjct: 27  VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQE 85

Query: 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDL 422
           LD+ +N++   G   V E +    SL  + L  N +GD G   +A  LK     +  + L
Sbjct: 86  LDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144

Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482
           G N +      A+A+ L+ N  +  L+LA N IG  G +AL+E LK + N+  L L    
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204

Query: 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542
           +   GA  +A+ L    ++ +L+L  N L D GA  LA +    N +L ++ L+ N+I D
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264

Query: 543 DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISL 579
           DGA  +A+ L   E +    L   N F  +  Q+++ 
Sbjct: 265 DGAKDLAEVLAEKESLLELDLRG-NKFGEEGAQLLAE 300

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 56.1 bits (135), Expect = 2e-08
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 25/219 (11%)

Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
           LE    L E+ L GN+IG E +  L + +++ +     L + N S  A       E   N
Sbjct: 26  LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRN----LRVVNFS-DAFTGRDKDELYSN 80

Query: 386 CKSLL----------WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435
              LL           ++L  N  G E  E++ D +  +  +  + L  N +       I
Sbjct: 81  LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI 140

Query: 436 ARVL---------KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486
            + L          D   +  +    N +     +  + +L+ H N+  +K+    I   
Sbjct: 141 GKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPE 200

Query: 487 GAEFVADM-LRYNNTISILDLRANGLRDEGAKCLAQSFK 524
           G   +A + L Y++++ +LDL+ N    EG++ LA +  
Sbjct: 201 GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239

Length = 388

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 29/303 (9%)

Query: 203 TAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV---DLR 259
           T   +K     L+    L  ++LSGN IG E ++ LC+++ +   +  +  S       +
Sbjct: 15  TKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDK 74

Query: 260 DEGAKAIAELLK---NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
           DE    +  LLK       L+ ++L++N         L + +  ++ +  L LN N  G 
Sbjct: 75  DELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134

Query: 317 LGANALAKGLEG---NKS------LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
           +    + K L     NK       L  +    N + +       + L S +  L  + I 
Sbjct: 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN-LKEVKIQ 193

Query: 368 NNSISAKGAFHVAEY-IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
            N I  +G   +A   +    SL  ++L  N    EG+  +ADAL +   +  + L    
Sbjct: 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253

Query: 427 IHSKGASAIARVL--KDNSVITSLDLAYNPIGADGAK----------ALSEVLKFHGNIN 474
           + ++G  ++ R    K    +  L   YN                  A+  ++    N N
Sbjct: 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313

Query: 475 TLK 477
            +K
Sbjct: 314 RIK 316

Length = 388

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 52/268 (19%), Positives = 98/268 (36%), Gaps = 47/268 (17%)

Query: 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDG------V 213
            +     VD+SG   G E +  L   +   +    V+F+         + +         
Sbjct: 28  MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA 87

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL--- 270
           L     L+ ++LS N  G E  + L D++  +  +  L+L++  L       I + L   
Sbjct: 88  LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL 147

Query: 271 ------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
                  +   L V+    N              LEN +                   A 
Sbjct: 148 AYNKKAADKPKLEVVICGRNR-------------LENGS---------------KELSAA 179

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
            LE +++L+E+ +  N I  EG+  L          L VLD+ +N+ + +G+ ++A+ + 
Sbjct: 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239

Query: 385 NCKSLLWINLYMND--IGDEGAEKIADA 410
               L  + L  ND  + +EG + +   
Sbjct: 240 EWNLLRELRL--NDCLLSNEGVKSVLRR 265

Length = 388

>gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor type

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSS 356
           N SLREL L  N +GDEG RAL   L  
Sbjct: 1   NPSLRELDLSNNKLGDEGARALAEALKD 28

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	600
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.95
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.88
KOG4308	478	consensus LRR-containing protein [Function unknown	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.84
KOG4308	478	consensus LRR-containing protein [Function unknown	99.79
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.62
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
KOG4341	483	consensus F-box protein containing LRR [General fu	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
KOG4341	483	consensus F-box protein containing LRR [General fu	99.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.54
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.36
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.33
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.21
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.67
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.54
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.05
PLN03150	623	hypothetical protein; Provisional	98.05
PLN03150	623	hypothetical protein; Provisional	98.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.88
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.75
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.54
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.53
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.44
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.43
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.43
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.13
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	96.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
PRK15386	426	type III secretion protein GogB; Provisional	96.24
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	96.19
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.86
PRK15386	426	type III secretion protein GogB; Provisional	95.86
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.83
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.8
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.33
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.04
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.18
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	82.95
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.61

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.97  E-value=5.6e-28  Score=244.98  Aligned_cols=314  Identities=31%  Similarity=0.400  Sum_probs=195.1

Q ss_pred             EEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCC--hhhHHHHHHHHh
Q 007526          222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALL  299 (600)
Q Consensus       222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~  299 (600)
                      .|+|.++.+++..+..+...   ..+|++|++++|.+++.+...++..+...++|++|+++++.+.  ..++..++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            34555555554433332222   2446666666666666666666666666666666666666655  445555555565


Q ss_pred             hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526          300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV  379 (600)
Q Consensus       300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  379 (600)
                      .+++|++|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            66666666666666654333333333333 55777777777766655555555554332467777777777776555556


Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG  459 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  459 (600)
                      ...+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            66666667777777777777776666666666666677777777777777666666666666677777777777777666


Q ss_pred             HHHHHHHHh-hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526          460 AKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN  538 (600)
Q Consensus       460 ~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n  538 (600)
                      ...+...+. ..+.|++|++++|.+++.+...+...+..+++|+++++++|.+++.+...+...+...-+.|++||+.+|
T Consensus       238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence            555554432 2456777777777776666666666666666777777777777776666666655443245666666665


Q ss_pred             C
Q 007526          539 E  539 (600)
Q Consensus       539 ~  539 (600)
                      .
T Consensus       318 ~  318 (319)
T cd00116         318 S  318 (319)
T ss_pred             C
Confidence            4

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.97  E-value=7.2e-28  Score=244.19  Aligned_cols=312  Identities=33%  Similarity=0.440  Sum_probs=211.8

Q ss_pred             EEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC--hHHHHHHHHHHh
Q 007526          166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV  243 (600)
Q Consensus       166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~  243 (600)
                      .|+|.++.+.+.....+...   ..+|++|++++|.+++.+...++..+...++|++|+++++.+.  ..++..++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence            46777777765554433333   3558888888888888878888877777788888888888776  566666777777


Q ss_pred             hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhC-CCccEEEccCCCCChHHHHHH
Q 007526          244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      .+++|++|++++|.+.......+...... ++|++|++++|++++.++..+...+..+ ++|++|++++|.++..+...+
T Consensus        79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            77888888888888776555556555444 6688888888888777777777777666 777777777777776665566


Q ss_pred             HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526          323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE  402 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  402 (600)
                      ...+..+++|++|++++|.+++.++..+...+... +.|++|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            66666667777777777777766666555555432 46777777777766666666666666666777777777766666


Q ss_pred             HHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEEeccC
Q 007526          403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW  480 (600)
Q Consensus       403 ~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~  480 (600)
                      ++..+...+.. .+.|++|++++|.+++.+...+...+..+++|+++++++|.+++++...+...+... +.|++|++.+
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            55555544332 456666666666666666666666666666666666666666666666666665555 5666666655


Q ss_pred             cC
Q 007526          481 CQ  482 (600)
Q Consensus       481 n~  482 (600)
                      +.
T Consensus       317 ~~  318 (319)
T cd00116         317 DS  318 (319)
T ss_pred             CC
Confidence            54

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-31  Score=267.10  Aligned_cols=390  Identities=18%  Similarity=0.149  Sum_probs=287.3

Q ss_pred             CCCcccccccccccccccccccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHH
Q 007526          126 EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA  205 (600)
Q Consensus       126 s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~  205 (600)
                      +++.|.|.  ..++.|.+..+...+...+..+  -.+.-+.||+++|.+.+.++.    .+.++++|+++++..|.++  
T Consensus        46 cpa~c~c~--~~lldcs~~~lea~~~~~l~g~--lp~~t~~LdlsnNkl~~id~~----~f~nl~nLq~v~l~~N~Lt--  115 (873)
T KOG4194|consen   46 CPATCPCN--TRLLDCSDRELEAIDKSRLKGF--LPSQTQTLDLSNNKLSHIDFE----FFYNLPNLQEVNLNKNELT--  115 (873)
T ss_pred             CCCcCCCC--ceeeecCccccccccccccCCc--CccceeeeeccccccccCcHH----HHhcCCcceeeeeccchhh--
Confidence            34555555  3344555555555444444333  134456899999999887643    3456799999999999876  


Q ss_pred             HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC
Q 007526          206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM  285 (600)
Q Consensus       206 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  285 (600)
                         .++.......+|+.|+|.+|.|.....+.+...    +.|+.|+|+.|.|+......++..    .++++|+|++|.
T Consensus       116 ---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~  184 (873)
T KOG4194|consen  116 ---RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNR  184 (873)
T ss_pred             ---hcccccccccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCCC----CCceEEeecccc
Confidence               344444445679999999999988755555444    889999999999887655455444    689999999999


Q ss_pred             CChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEE
Q 007526          286 IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD  365 (600)
Q Consensus       286 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~  365 (600)
                      |++-+..    .|..+.+|..|.|+.|.++..+.    ..|+.+++|+.|+|..|.|.....-. +    ...++|+.|.
T Consensus       185 It~l~~~----~F~~lnsL~tlkLsrNrittLp~----r~Fk~L~~L~~LdLnrN~irive~lt-F----qgL~Sl~nlk  251 (873)
T KOG4194|consen  185 ITTLETG----HFDSLNSLLTLKLSRNRITTLPQ----RSFKRLPKLESLDLNRNRIRIVEGLT-F----QGLPSLQNLK  251 (873)
T ss_pred             ccccccc----cccccchheeeecccCcccccCH----HHhhhcchhhhhhccccceeeehhhh-h----cCchhhhhhh
Confidence            9865433    44567799999999999998887    45567999999999999876431111 1    3445899999


Q ss_pred             CcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007526          366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI  445 (600)
Q Consensus       366 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  445 (600)
                      |..|.|....-    ..+-.+.++++|+|+.|++....    ...+..++.|+.|++++|.|....+..+.-    +++|
T Consensus       252 lqrN~I~kL~D----G~Fy~l~kme~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf----tqkL  319 (873)
T KOG4194|consen  252 LQRNDISKLDD----GAFYGLEKMEHLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF----TQKL  319 (873)
T ss_pred             hhhcCcccccC----cceeeecccceeecccchhhhhh----cccccccchhhhhccchhhhheeecchhhh----cccc
Confidence            99998876321    23557889999999999887642    234556789999999999988776655543    5999


Q ss_pred             CEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC---hHHHHHHHHH
Q 007526          446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR---DEGAKCLAQS  522 (600)
Q Consensus       446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~---~~~~~~l~~~  522 (600)
                      ++|+|++|.|+......+..    +..|++|+++.|.|+...-.+|..+    ++|++|||++|.|.   +++...+..+
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~----L~~Le~LnLs~Nsi~~l~e~af~~l----ssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRV----LSQLEELNLSHNSIDHLAEGAFVGL----SSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             eeEeccccccccCChhHHHH----HHHhhhhcccccchHHHHhhHHHHh----hhhhhhcCcCCeEEEEEecchhhhccc
Confidence            99999999988766655533    3489999999999977655555544    99999999999765   3344445554


Q ss_pred             HhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHH
Q 007526          523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLF  580 (600)
Q Consensus       523 l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  580 (600)
                           ++|+.|++.+|+|+.....++..+..      |++|||.+|.|-.+-..++..
T Consensus       392 -----~~LrkL~l~gNqlk~I~krAfsgl~~------LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  392 -----PSLRKLRLTGNQLKSIPKRAFSGLEA------LEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             -----hhhhheeecCceeeecchhhhccCcc------cceecCCCCcceeeccccccc
Confidence                 88999999999999877777766555      999999999998887777765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=6e-30  Score=297.00  Aligned_cols=383  Identities=19%  Similarity=0.203  Sum_probs=179.3

Q ss_pred             HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526          157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK  236 (600)
Q Consensus       157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  236 (600)
                      .+..+++|++|+|++|.+...    ++..+..+++|++|++++|.++.    .++..+..+++|++|++++|.+...   
T Consensus       159 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~---  227 (968)
T PLN00113        159 DIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGE---  227 (968)
T ss_pred             HHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCc---
Confidence            344566677777766665432    23444555666666666666532    1223334455566666666555432   


Q ss_pred             HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA  316 (600)
Q Consensus       237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  316 (600)
                       ++..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+++    .++..+..+++|++|++++|.++.
T Consensus       228 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        228 -IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             -CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeecc
Confidence             333344445555555555555432    22233334555555555554432    123333344444444444444332


Q ss_pred             HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH--------------------HHhhhcCCCcccEEECcCCCCChhhH
Q 007526          317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL--------------------MSGLSSRKGKLAVLDIGNNSISAKGA  376 (600)
Q Consensus       317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l--------------------~~~l~~~~~~L~~L~Ls~n~i~~~~~  376 (600)
                      .    ++..+..+++|+.|++++|.+.+.....+                    ...+ ...++|+.|++++|.+...  
T Consensus       299 ~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~--  371 (968)
T PLN00113        299 E----IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGE--  371 (968)
T ss_pred             C----CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEee--
Confidence            1    11222334444444444444332211111                    0001 1112344444444433321  


Q ss_pred             HHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                        ++..+..+++|+.|++++|.+.+.    ++..+..+++|+.|++++|.++...    +..+..++.|+.|++++|.+.
T Consensus       372 --~p~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~  441 (968)
T PLN00113        372 --IPEGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQDNSFSGEL----PSEFTKLPLVYFLDISNNNLQ  441 (968)
T ss_pred             --CChhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcCCEeeeEC----ChhHhcCCCCCEEECcCCccc
Confidence              222222223333333333322221    2223333444444444444443321    112222344444444444333


Q ss_pred             hhHHHH--------------------HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          457 ADGAKA--------------------LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA  516 (600)
Q Consensus       457 ~~~~~~--------------------l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  516 (600)
                      +.....                    +... ...++|++|++++|++++..+..+..    +++|++|++++|.+....+
T Consensus       442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~----l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        442 GRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGS----LSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             CccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhh----hhccCEEECcCCcceeeCC
Confidence            211110                    0000 12245666677776666554444433    3777777777777776555


Q ss_pred             HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526          517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC  596 (600)
Q Consensus       517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c  596 (600)
                      ..+...     ++|++|+|++|.+++..+..+..+..      |+.|+|++|++.......+..    ...++.+++++|
T Consensus       517 ~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~p~~l~~----l~~L~~l~ls~N  581 (968)
T PLN00113        517 DELSSC-----KKLVSLDLSHNQLSGQIPASFSEMPV------LSQLDLSQNQLSGEIPKNLGN----VESLVQVNISHN  581 (968)
T ss_pred             hHHcCc-----cCCCEEECCCCcccccCChhHhCccc------CCEEECCCCcccccCChhHhc----CcccCEEeccCC
Confidence            445443     67888888888887766666655433      888888888877544433322    244566666655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=6.9e-30  Score=296.51  Aligned_cols=363  Identities=17%  Similarity=0.193  Sum_probs=201.8

Q ss_pred             HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526          157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK  236 (600)
Q Consensus       157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  236 (600)
                      .+..+++|++|+|++|.+...    ++..+..+++|++|++++|.++..    ++..+..+++|++|++++|.+......
T Consensus       183 ~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        183 SLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             hhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceeccccCh
Confidence            344556666666666655422    233444455555555555554321    222233444455555555444322000


Q ss_pred             --------------------HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526          237 --------------------CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE  296 (600)
Q Consensus       237 --------------------~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  296 (600)
                                          .++..+..+++|++|++++|.++..    ++..+.++++|++|++++|.++.    .++.
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~----~~~~  326 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLEILHLFSNNFTG----KIPV  326 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCcEEECCCCccCC----cCCh
Confidence                                0222223334444444444444332    22333344555555555555542    2334


Q ss_pred             HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526          297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA  376 (600)
Q Consensus       297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  376 (600)
                      .+..+++|+.|++++|.++..    ++..+..+++|+.|++++|.+.+.....+.     ..++|+.|++++|.+.....
T Consensus       327 ~~~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-----~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        327 ALTSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-----SSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             hHhcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCCCeeEeeCChhHh-----CcCCCCEEECcCCEecccCC
Confidence            445566666666666665432    223344566777777777766543221111     12245555555554443200


Q ss_pred             H--------------------HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHH
Q 007526          377 F--------------------HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA  436 (600)
Q Consensus       377 ~--------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  436 (600)
                      .                    .++..+..+++|+.|++++|.+.+.    ++..+..+++|+.|++++|.+.....    
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~p----  469 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR----INSRKWDMPSLQMLSLARNKFFGGLP----  469 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc----cChhhccCCCCcEEECcCceeeeecC----
Confidence            0                    0333344444555555555544432    22223344556666666655543211    


Q ss_pred             HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          437 RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA  516 (600)
Q Consensus       437 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  516 (600)
                      ..+ ..++|+.|++++|.++.....    .+..+++|++|++++|.+.+..+..    +..+++|++|+|++|.+++..+
T Consensus       470 ~~~-~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p  540 (968)
T PLN00113        470 DSF-GSKRLENLDLSRNQFSGAVPR----KLGSLSELMQLKLSENKLSGEIPDE----LSSCKKLVSLDLSHNQLSGQIP  540 (968)
T ss_pred             ccc-ccccceEEECcCCccCCccCh----hhhhhhccCEEECcCCcceeeCChH----HcCccCCCEEECCCCcccccCC
Confidence            111 236788888888877654333    3455679999999999998765544    4456999999999999998777


Q ss_pred             HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      ..+..+     ++|++||+++|++.+..+..+.....      |+.|++++|++..
T Consensus       541 ~~~~~l-----~~L~~L~Ls~N~l~~~~p~~l~~l~~------L~~l~ls~N~l~~  585 (968)
T PLN00113        541 ASFSEM-----PVLSQLDLSQNQLSGEIPKNLGNVES------LVQVNISHNHLHG  585 (968)
T ss_pred             hhHhCc-----ccCCEEECCCCcccccCChhHhcCcc------cCEEeccCCccee
Confidence            767665     88999999999999887777765443      9999999999875

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-30  Score=257.74  Aligned_cols=353  Identities=21%  Similarity=0.221  Sum_probs=273.0

Q ss_pred             HHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHH
Q 007526          156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV  235 (600)
Q Consensus       156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  235 (600)
                      .++.++++|++++|..|.++.     ++.......+|+.|+|.+|.|+...-+.+..    .+.|++||||.|.|+....
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~----l~alrslDLSrN~is~i~~  166 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSA----LPALRSLDLSRNLISEIPK  166 (873)
T ss_pred             HHHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHh----HhhhhhhhhhhchhhcccC
Confidence            556789999999999998876     4554445678999999999987665555543    3669999999999876544


Q ss_pred             HHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG  315 (600)
Q Consensus       236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  315 (600)
                      ..++.    -.++++|+|++|.|++.+...|..+    .+|..|.|+.|+|+    ......|+.+++|+.|+|..|.+.
T Consensus       167 ~sfp~----~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrit----tLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  167 PSFPA----KVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRIT----TLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             CCCCC----CCCceEEeecccccccccccccccc----chheeeecccCccc----ccCHHHhhhcchhhhhhcccccee
Confidence            33433    3789999999999999877777666    78999999999996    333445666999999999999986


Q ss_pred             hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526          316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY  395 (600)
Q Consensus       316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  395 (600)
                      ....    -.|.++++|+.|.|..|++..     +-.+......++++|+|..|++...    -..++-+++.|+.|+||
T Consensus       235 ive~----ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  235 IVEG----LTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             eehh----hhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh----hcccccccchhhhhccc
Confidence            5422    346689999999999998764     2222223445899999999998874    23456789999999999


Q ss_pred             CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccE
Q 007526          396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT  475 (600)
Q Consensus       396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  475 (600)
                      +|.|...    -.+.+..++.|+.|+|+.|+|+.....++..+    ..|++|+|+.|.|+......+    ....+|++
T Consensus       302 ~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af----~~lssL~~  369 (873)
T KOG4194|consen  302 YNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAF----VGLSSLHK  369 (873)
T ss_pred             hhhhhee----ecchhhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHH----HHhhhhhh
Confidence            9988764    33556778999999999999998777777766    899999999998865533333    44569999


Q ss_pred             EeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhC
Q 007526          476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN  555 (600)
Q Consensus       476 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~  555 (600)
                      ||++.|.+...- +.-+..+..++.|+.|++.||+|..+.-..+...     ..|++|||.+|.|....+.++..+ .  
T Consensus       370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl-----~~LE~LdL~~NaiaSIq~nAFe~m-~--  440 (873)
T KOG4194|consen  370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL-----EALEHLDLGDNAIASIQPNAFEPM-E--  440 (873)
T ss_pred             hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhccC-----cccceecCCCCcceeecccccccc-h--
Confidence            999999764321 1122334445999999999999999888877776     889999999999998888887766 4  


Q ss_pred             cccceeEEEccC
Q 007526          556 EDVAVTSLNLAN  567 (600)
Q Consensus       556 ~~~~L~~L~l~~  567 (600)
                          |++|.+..
T Consensus       441 ----Lk~Lv~nS  448 (873)
T KOG4194|consen  441 ----LKELVMNS  448 (873)
T ss_pred             ----hhhhhhcc
Confidence                77776654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.95  E-value=2.8e-26  Score=216.42  Aligned_cols=343  Identities=25%  Similarity=0.327  Sum_probs=263.7

Q ss_pred             HhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCC---CC---hHHHHHHHHHHhcCCCccEEeecCCCCC
Q 007526          214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD---LR---DEGAKAIAELLKNNSILRVLELNNNMID  287 (600)
Q Consensus       214 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~---l~---~~~~~~l~~~l~~~~~L~~L~L~~n~i~  287 (600)
                      +.....++.|+||+|.++......++..+.+.+.|+..++++-.   +.   ......+...+..+++|++||||+|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            33344445555555555444444444444444444444444321   11   1234456666777788899999999888


Q ss_pred             hhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECc
Q 007526          288 YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG  367 (600)
Q Consensus       288 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  367 (600)
                      ..++..+.+.+.++..|++|.|.+|.++..+...+..++..+.        .++           .. ...++|+.+..+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k-----------k~-~~~~~Lrv~i~~  165 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK-----------KA-ASKPKLRVFICG  165 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh-----------cc-CCCcceEEEEee
Confidence            8888888888888888999999888888888877776554421        111           01 244589999999


Q ss_pred             CCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCE
Q 007526          368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS  447 (600)
Q Consensus       368 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  447 (600)
                      .|.+.+.+...++..+...+.|+.+.++.|.|...|+..+..++..|++|+.|||.+|.++..+..+++..++..++|++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EECcCCCCChhHHHHHHHHHhh-CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC--ChHHHHHHHHHHh
Q 007526          448 LDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL--RDEGAKCLAQSFK  524 (600)
Q Consensus       448 L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~  524 (600)
                      |++++|.+.+.|..++.+.+.. .+.|++|.+.+|.|+..+...++..+...|.|..|+|++|.+  .++++..+...+.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~  325 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD  325 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence            9999999999999999888865 789999999999999999988888888889999999999999  7778887777763


Q ss_pred             hcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          525 VVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       525 ~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      ....-+...+.+.+.+...+.............  -+.++..++-+.+.+.+-+
T Consensus       326 ~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t--~~e~~ed~e~ie~e~~ee~  377 (382)
T KOG1909|consen  326 TAHVLLEDIDDSEEELEREGEEDEEEEVEKKET--FKELNEDGEVIEEEGIEEL  377 (382)
T ss_pred             cccccchhhchhHHHHHhhhhhHHHHHHHhcCc--chhhcccccccchhHHHHh
Confidence            332456677788888888877777666655553  6777777887777665543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.95  E-value=4e-26  Score=215.44  Aligned_cols=343  Identities=24%  Similarity=0.339  Sum_probs=214.9

Q ss_pred             hHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCC---C---HHHHHHHHHHHhcCCCccE
Q 007526          149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGI---T---AAGIKAFDGVLQSNIALKT  222 (600)
Q Consensus       149 ~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l---~---~~~~~~l~~~l~~~~~L~~  222 (600)
                      .+.+.+.+.......+++|+||||.++.+....++..+...++|+..++++--.   .   ...+..|.+.+..+++|++
T Consensus        17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~   96 (382)
T KOG1909|consen   17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK   96 (382)
T ss_pred             hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence            344566677778889999999999999999999999999999999999998531   1   2446667778888899999


Q ss_pred             EEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc---------CCCccEEeecCCCCChhhHHH
Q 007526          223 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN---------NSILRVLELNNNMIDYSGFTS  293 (600)
Q Consensus       223 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~---------~~~L~~L~L~~n~i~~~~~~~  293 (600)
                      ||||.|.++..+...+.+.+.++..|++|.|.+|.+...+...++.++..         -+.|+++..+.|++.+.+...
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~  176 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATA  176 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHH
Confidence            99999999999999999999999999999999999999888887775432         234555555555555555555


Q ss_pred             HHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCCh
Q 007526          294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA  373 (600)
Q Consensus       294 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~  373 (600)
                      ++..+...+.|+.+.+..|.+...++..+..++..|++|+.|||..|-                             ++.
T Consensus       177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----------------------------ft~  227 (382)
T KOG1909|consen  177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----------------------------FTL  227 (382)
T ss_pred             HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-----------------------------hhh
Confidence            555555455555555555555444444444444455555555555544                             444


Q ss_pred             hhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC
Q 007526          374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY  452 (600)
Q Consensus       374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  452 (600)
                      .+...+++.++.+++|++|++++|.+.+.|...+.+++.. .+.|+.|.+.+|.|+.++...++..+...|.|+.|+|++
T Consensus       228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            4444455555555555555555555555555555555443 455555555555555555555555555555555555555


Q ss_pred             CCC--ChhHHHHHHHHHh-hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526          453 NPI--GADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA  520 (600)
Q Consensus       453 n~i--~~~~~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  520 (600)
                      |.+  +++++..+...+. ....+...+.+.+.+.+.+.............=+.++..++.+.+.+...+.
T Consensus       308 N~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~  378 (382)
T KOG1909|consen  308 NRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELK  378 (382)
T ss_pred             ccccccchhHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhh
Confidence            555  3333333333321 1123334444445555554444444444445555555555555555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=1.7e-26  Score=231.58  Aligned_cols=335  Identities=19%  Similarity=0.191  Sum_probs=242.6

Q ss_pred             ccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEc
Q 007526          146 LFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL  225 (600)
Q Consensus       146 ~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L  225 (600)
                      +.+.....+++-+..+.+|++|.+++|++..     +-..+..++.|+.+.+.+|.+...|+   +.-+.++..|+.|||
T Consensus        39 Lnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKnsGi---P~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   39 LNRTKLEQVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKNSGI---PTDIFRLKDLTILDL  110 (1255)
T ss_pred             echhhhhhChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhccccccCCC---Cchhcccccceeeec
Confidence            3444555666667788888888888887765     34456667888888888888765443   334456778899999


Q ss_pred             cCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCcc
Q 007526          226 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR  305 (600)
Q Consensus       226 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  305 (600)
                      |+|++..     .+..+...+++-.|+|++|+|..+.-..+...    ..|-.|||++|++     ..++..+..+..|+
T Consensus       111 ShNqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL----tDLLfLDLS~NrL-----e~LPPQ~RRL~~Lq  176 (1255)
T KOG0444|consen  111 SHNQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL----TDLLFLDLSNNRL-----EMLPPQIRRLSMLQ  176 (1255)
T ss_pred             chhhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHhh----HhHhhhccccchh-----hhcCHHHHHHhhhh
Confidence            9998865     45666667888889999998877544444444    6788899999988     67788888888999


Q ss_pred             EEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh
Q 007526          306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN  385 (600)
Q Consensus       306 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  385 (600)
                      +|+|++|.+.......+    ..+.+|+.|++++.+-+-..+..-...+    .+|..+|+|.|++..     +|+.+-+
T Consensus       177 tL~Ls~NPL~hfQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~-----vPecly~  243 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPI-----VPECLYK  243 (1255)
T ss_pred             hhhcCCChhhHHHHhcC----ccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCc-----chHHHhh
Confidence            99999998876655443    3677888888888764433222222222    278899999998887     8888889


Q ss_pred             CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526          386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE  465 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  465 (600)
                      +++|+.|+||+|+|++..     .....-.+|++|+++.|+++.     ++.+++.++.|+.|.+.+|+++-+|+   +.
T Consensus       244 l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeGi---PS  310 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEGI---PS  310 (1255)
T ss_pred             hhhhheeccCcCceeeee-----ccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccCC---cc
Confidence            999999999999888732     122223678999999998876     66777777999999999998876653   44


Q ss_pred             HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      .++.+.+|+.+..++|.+.     .+.+.+..|..|+.|.|+.|++-.- +..+.-.     +.|+.||+..|.
T Consensus       311 GIGKL~~Levf~aanN~LE-----lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL-----~~l~vLDlreNp  373 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLE-----LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLL-----PDLKVLDLRENP  373 (1255)
T ss_pred             chhhhhhhHHHHhhccccc-----cCchhhhhhHHHHHhcccccceeec-hhhhhhc-----CCcceeeccCCc
Confidence            5556668888888888763     3456677778999999999965541 1222222     778999999884

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=9.9e-26  Score=226.16  Aligned_cols=347  Identities=18%  Similarity=0.219  Sum_probs=263.4

Q ss_pred             HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526          157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK  236 (600)
Q Consensus       157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  236 (600)
                      -++++..++-|.|....+     ..+++.++.+.+|++|.+++|++.     .+.+.+..++.|+.+++.+|++...|  
T Consensus        27 ~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG--   94 (1255)
T KOG0444|consen   27 DVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG--   94 (1255)
T ss_pred             hHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC--
Confidence            345677778887765544     447888888999999999999864     45566778899999999999987765  


Q ss_pred             HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH-hhCCCccEEEccCCCCC
Q 007526          237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYGG  315 (600)
Q Consensus       237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~  315 (600)
                       ++.-+.++..|+.|+|++|++.+     .+..+.+-+++..|+|++|+|     ..|+..+ .++..|-.|+|++|.+.
T Consensus        95 -iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   95 -IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             -CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccchhh
Confidence             55666678999999999999876     344455558999999999998     4555543 35788999999999875


Q ss_pred             hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526          316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY  395 (600)
Q Consensus       316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  395 (600)
                      .     ++..+..+..|++|+|++|.+....++.++     ...+|+.|.+++.+-+   ...+|..+..+.+|..+|+|
T Consensus       164 ~-----LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-----smtsL~vLhms~TqRT---l~N~Ptsld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  164 M-----LPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-----SMTSLSVLHMSNTQRT---LDNIPTSLDDLHNLRDVDLS  230 (1255)
T ss_pred             h-----cCHHHHHHhhhhhhhcCCChhhHHHHhcCc-----cchhhhhhhcccccch---hhcCCCchhhhhhhhhcccc
Confidence            4     445566778899999999998776666553     3347888888886433   22477778888899999999


Q ss_pred             CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccE
Q 007526          396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT  475 (600)
Q Consensus       396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  475 (600)
                      .|.+..     +++.+.++++|+.|+|++|.|+.... ....+    .+|++|+++.|+++.     ++.++..+++|+.
T Consensus       231 ~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-~~~~W----~~lEtLNlSrNQLt~-----LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  231 ENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-TEGEW----ENLETLNLSRNQLTV-----LPDAVCKLTKLTK  295 (1255)
T ss_pred             ccCCCc-----chHHHhhhhhhheeccCcCceeeeec-cHHHH----hhhhhhccccchhcc-----chHHHhhhHHHHH
Confidence            999887     78888899999999999999987432 23444    789999999998864     4566667789999


Q ss_pred             EeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhC
Q 007526          476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN  555 (600)
Q Consensus       476 L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~  555 (600)
                      |.+.+|+++-.+.   ...+.++.+|+++..++|.+.-. +..++.+     ..|+.|.|+.|.+.. -+..|.-+    
T Consensus       296 Ly~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LElV-PEglcRC-----~kL~kL~L~~NrLiT-LPeaIHlL----  361 (1255)
T KOG0444|consen  296 LYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLELV-PEGLCRC-----VKLQKLKLDHNRLIT-LPEAIHLL----  361 (1255)
T ss_pred             HHhccCcccccCC---ccchhhhhhhHHHHhhccccccC-chhhhhh-----HHHHHhcccccceee-chhhhhhc----
Confidence            9999998876543   34555568999999999976643 3446666     679999999997652 23333222    


Q ss_pred             cccceeEEEccCCCC
Q 007526          556 EDVAVTSLNLANNFL  570 (600)
Q Consensus       556 ~~~~L~~L~l~~n~l  570 (600)
                      +  .|+.||+..|+-
T Consensus       362 ~--~l~vLDlreNpn  374 (1255)
T KOG0444|consen  362 P--DLKVLDLRENPN  374 (1255)
T ss_pred             C--CcceeeccCCcC
Confidence            2  299999999863

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.88  E-value=4.9e-26  Score=217.63  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       500 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      .++.+-.++|+|....+..+..+     .+|.+||+.+|.|.. .+..+..+..      +++|+++||+|..
T Consensus       482 ~lEtllas~nqi~~vd~~~l~nm-----~nL~tLDL~nNdlq~-IPp~Lgnmtn------L~hLeL~gNpfr~  542 (565)
T KOG0472|consen  482 TLETLLASNNQIGSVDPSGLKNM-----RNLTTLDLQNNDLQQ-IPPILGNMTN------LRHLELDGNPFRQ  542 (565)
T ss_pred             HHHHHHhccccccccChHHhhhh-----hhcceeccCCCchhh-CChhhccccc------eeEEEecCCccCC
Confidence            34444444455555555545555     789999999998874 3444555444      9999999999884

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.86  E-value=1.1e-21  Score=203.59  Aligned_cols=417  Identities=29%  Similarity=0.393  Sum_probs=350.9

Q ss_pred             HHHHHHHHhCCCccEEEcCCCCCCHHH---HHHHHHHhccCCC----ccEEEcccCCCCHHHHHHHHHHHhcCCCccEEE
Q 007526          152 QTLNEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGYNQT----AEEVSFAANGITAAGIKAFDGVLQSNIALKTLN  224 (600)
Q Consensus       152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~~~~----L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~  224 (600)
                      .++.......+.+..+.++.+...+.+   .......+....+    +..|+|.+|.+.+.+...++..+..+++|+.|+
T Consensus        42 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~  121 (478)
T KOG4308|consen   42 RDLRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLD  121 (478)
T ss_pred             HHHHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhh
Confidence            344455556677778888887777666   3333334443222    889999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHHHHHHhhC-CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh---
Q 007526          225 LSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE---  300 (600)
Q Consensus       225 Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~---  300 (600)
                      +++|.+++.+...+++.+... +.++.|++..|.++..+...++..+..+..++.++++.|.+...+...+...+..   
T Consensus       122 l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~  201 (478)
T KOG4308|consen  122 LSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAAS  201 (478)
T ss_pred             cccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhc
Confidence            999999999999999998886 7899999999999999999999999989999999999999988888888888875   


Q ss_pred             -CCCccEEEccCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526          301 -NSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH  378 (600)
Q Consensus       301 -~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  378 (600)
                       ..++++|++++|.++...+..+...+...++ +.+|++..|.+.+.++..+...+....+.++.++++.|.|++.+...
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence             7799999999999999999888888888887 88899999999999999999988876678999999999999999999


Q ss_pred             HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH-HHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK-GASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                      +.+.+..++.++.+.+++|.+.+.+...+...+.....+.++-+.++..... +...++.+......+.....+++...+
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGE  361 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchH
Confidence            9999999999999999999999999999999888888888888886654443 334444444444666677778888888


Q ss_pred             hHHHHHHHHHhhCCC-ccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEcc
Q 007526          458 DGAKALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA  536 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~-L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls  536 (600)
                      ++...+......... +..+++..+.+.+.+...++..+..++.+.+++++.|...+++...+........ .++.++++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~  440 (478)
T KOG4308|consen  362 EGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLS  440 (478)
T ss_pred             HHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhc
Confidence            877777665544333 7788888888888888888888899999999999999999998888888776654 89999999


Q ss_pred             CCCCChhHHHHHHHHHHhCcccceeEEEccCCCCc
Q 007526          537 FNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT  571 (600)
Q Consensus       537 ~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~  571 (600)
                      .|.++..+..........++.  +..+-+.+|.+.
T Consensus       441 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  473 (478)
T KOG4308|consen  441 RNPITALGTEELQRALALNPG--ILAIRLRGNVIG  473 (478)
T ss_pred             cChhhhcchHHHHHHHhcCCC--cceeecccCccc
Confidence            999999999989888887775  777777777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-22  Score=213.79  Aligned_cols=354  Identities=19%  Similarity=0.201  Sum_probs=208.1

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD  240 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  240 (600)
                      .-+|++|||++|++.+.+     ..+....+|+.|+++.|.|..     .+..+.++.+|++|+|.+|.+..     ++.
T Consensus        44 ~v~L~~l~lsnn~~~~fp-----~~it~l~~L~~ln~s~n~i~~-----vp~s~~~~~~l~~lnL~~n~l~~-----lP~  108 (1081)
T KOG0618|consen   44 RVKLKSLDLSNNQISSFP-----IQITLLSHLRQLNLSRNYIRS-----VPSSCSNMRNLQYLNLKNNRLQS-----LPA  108 (1081)
T ss_pred             eeeeEEeeccccccccCC-----chhhhHHHHhhcccchhhHhh-----Cchhhhhhhcchhheeccchhhc-----Cch
Confidence            444889999999887743     333344688888888887642     23345567788888888887654     556


Q ss_pred             HHhhCCCcCEEEeecCCCChHHHH--HHH-----HH--------HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCcc
Q 007526          241 ILVDNAGVERLQLSSVDLRDEGAK--AIA-----EL--------LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR  305 (600)
Q Consensus       241 ~l~~~~~L~~L~Ls~~~l~~~~~~--~l~-----~~--------l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~  305 (600)
                      .+..+.+|++|++++|++......  ...     .+        ++. ..++.+++..|.+.+.    +...+..+..  
T Consensus       109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~----~~~~i~~l~~--  181 (1081)
T KOG0618|consen  109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGS----FLIDIYNLTH--  181 (1081)
T ss_pred             hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccc----hhcchhhhhe--
Confidence            666678888888888876642110  000     00        111 1244455555544321    1222212222  


Q ss_pred             EEEccCCCCChHHHHHHHH-------------HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCC
Q 007526          306 SLHLNGNYGGALGANALAK-------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS  372 (600)
Q Consensus       306 ~L~L~~n~l~~~~~~~l~~-------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~  372 (600)
                      .|+|+.|.++......+..             .-...++|+.|+.+.|.++.....       ....+|++++++.|.++
T Consensus       182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-------p~p~nl~~~dis~n~l~  254 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-------PVPLNLQYLDISHNNLS  254 (1081)
T ss_pred             eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-------cccccceeeecchhhhh
Confidence            3666666655222111100             000234566666666665532111       12237899999999888


Q ss_pred             hhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC
Q 007526          373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY  452 (600)
Q Consensus       373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  452 (600)
                      .     +++++..|.+|+.++..+|+++.     ++..+.....|+.|.+..|.+..     ++..+...+.|++|+|..
T Consensus       255 ~-----lp~wi~~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l~~~~nel~y-----ip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  255 N-----LPEWIGACANLEALNANHNRLVA-----LPLRISRITSLVSLSAAYNELEY-----IPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             c-----chHHHHhcccceEecccchhHHh-----hHHHHhhhhhHHHHHhhhhhhhh-----CCCcccccceeeeeeehh
Confidence            8     78899999999999999998854     55555566778888877776543     444444457888888888


Q ss_pred             CCCChhHHHHHHHHH---------------------hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526          453 NPIGADGAKALSEVL---------------------KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL  511 (600)
Q Consensus       453 n~i~~~~~~~l~~~l---------------------~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  511 (600)
                      |+|.......+...-                     ..++.|+.|.+.+|.+++..+..+...    +.|+.|+|++|++
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~----~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF----KHLKVLHLSYNRL  395 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc----cceeeeeeccccc
Confidence            877655432221110                     123345556666666666654443333    6677777777766


Q ss_pred             ChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526          512 RDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG  574 (600)
Q Consensus       512 ~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~  574 (600)
                      +......+...     ..|++|+||||+++.. +..++.+..      |++|..-+|++..++
T Consensus       396 ~~fpas~~~kl-----e~LeeL~LSGNkL~~L-p~tva~~~~------L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  396 NSFPASKLRKL-----EELEELNLSGNKLTTL-PDTVANLGR------LHTLRAHSNQLLSFP  446 (1081)
T ss_pred             ccCCHHHHhch-----HHhHHHhcccchhhhh-hHHHHhhhh------hHHHhhcCCceeech
Confidence            65555545444     5567777777766632 244544444      666666677666665

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=99.79  E-value=3.1e-19  Score=185.32  Aligned_cols=362  Identities=28%  Similarity=0.373  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccC-CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC
Q 007526          150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN  228 (600)
Q Consensus       150 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  228 (600)
                      ..+.+...++.+++|..|++++|.+++.+...+.+.+... ..+++|++..|.++..+...+...+..+..++.++++.|
T Consensus       103 ~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n  182 (478)
T KOG4308|consen  103 GAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLN  182 (478)
T ss_pred             hHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhc
Confidence            4445555555566666666666666666666666665554 555566666666666666666666655556666666666


Q ss_pred             CCChHHHHHHHHHHhh----CCCcCEEEeecCCCChHHHHHHHHHHhcCCC-ccEEeecCCCCChhhHHHHHHHHhhC-C
Q 007526          229 PIGDEGVKCLCDILVD----NAGVERLQLSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDYSGFTSLAEALLEN-S  302 (600)
Q Consensus       229 ~l~~~~~~~l~~~l~~----~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~-~  302 (600)
                      .+...+...++..+..    ..++++|++++|.++...+..+...+...+. +..|++..|.+.|.++..+...+... .
T Consensus       183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~  262 (478)
T KOG4308|consen  183 GLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSE  262 (478)
T ss_pred             ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccch
Confidence            6655555555555553    4455666666666665555555555555444 55566666666555555555555554 4


Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCCh-hhHHHHHH
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-KGAFHVAE  381 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~-~~~~~l~~  381 (600)
                      .+++++++.|.+++.+...++..+..++.++.|.++.|.+++.+...+...+.... .+.++-+.+++... .....+..
T Consensus       263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~  341 (478)
T KOG4308|consen  263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKT-PLLHLVLGGTGKGTRGGTSVLAE  341 (478)
T ss_pred             hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcc-cchhhhccccCccchhHHHHHHH
Confidence            55556666666555555555555555555555666555555555555555444322 34444444332222 22222222


Q ss_pred             HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCC-ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHH
Q 007526          382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA  460 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  460 (600)
                      .......+.....+++...+++...+.......+. +..+++..+.+...+...++..+..++.++.++++.|...+++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~  421 (478)
T KOG4308|consen  342 ADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGA  421 (478)
T ss_pred             HHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhH
Confidence            22233333334444445555444444443333222 44555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       461 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ..+......+..++.++++.|.++..+...........+......+..|.++
T Consensus       422 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (478)
T KOG4308|consen  422 EVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIG  473 (478)
T ss_pred             HHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence            5554444444455555555555555555555555555555555555554443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.79  E-value=2.4e-22  Score=192.51  Aligned_cols=355  Identities=21%  Similarity=0.257  Sum_probs=210.3

Q ss_pred             HHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHH-
Q 007526          156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG-  234 (600)
Q Consensus       156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~-  234 (600)
                      +=++.+..+++|++.+|.+..     ++.+++....++.++.++|++.     .++..+....+|.+++.+.|.+..-. 
T Consensus        62 ~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s~n~~~el~~  131 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCSSNELKELPD  131 (565)
T ss_pred             HhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhccccceeecCc
Confidence            334567777888887776654     3455555566666666666643     34444445555666666665543200 


Q ss_pred             -----------------HHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526          235 -----------------VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA  297 (600)
Q Consensus       235 -----------------~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  297 (600)
                                       ...+++.+..+..+..+++.+|++.......++     ++.|++||...|.+     +.+++.
T Consensus       132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N~L-----~tlP~~  201 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSNLL-----ETLPPE  201 (565)
T ss_pred             hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-----HHHHHhcccchhhh-----hcCChh
Confidence                             001233333344444455555544443222222     25577777777666     566777


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526          298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF  377 (600)
Q Consensus       298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~  377 (600)
                      ++.+.+|+.|++.+|++...+      .|.+|..|++|+++.|.+.-     +........+.+..||+.+|++.+    
T Consensus       202 lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vLDLRdNklke----  266 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVLDLRDNKLKE----  266 (565)
T ss_pred             hcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceeeecccccccc----
Confidence            777777888888888765443      35677788888888887654     333333566689999999999988    


Q ss_pred             HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH-------HHHHHhh----------
Q 007526          378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-------AIARVLK----------  440 (600)
Q Consensus       378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------~l~~~l~----------  440 (600)
                       +|..+..+++|..||+|+|.|+.     ++..++++ +|+.|.+.||.+......       .+.+.+.          
T Consensus       267 -~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  267 -VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             -CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence             78888888999999999999887     67778777 899999999987543222       1111111          


Q ss_pred             --------------------cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHH--HHHHHhhC
Q 007526          441 --------------------DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF--VADMLRYN  498 (600)
Q Consensus       441 --------------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~--l~~~l~~~  498 (600)
                                          ...+.+.|++++-++++...+.+..+ + -.-.+.+++++|++...+...  +.++    
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~-~~~Vt~VnfskNqL~elPk~L~~lkel----  413 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-K-SEIVTSVNFSKNQLCELPKRLVELKEL----  413 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-h-hcceEEEecccchHhhhhhhhHHHHHH----
Confidence                                11234555555555555444444222 1 113556666666665443221  1111    


Q ss_pred             CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526          499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF  573 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~  573 (600)
                        .+.+++++|.++-.+. .+++.     +.|..|++++|.+.+. +..+.....      |+.||+++|.|...
T Consensus       414 --vT~l~lsnn~isfv~~-~l~~l-----~kLt~L~L~NN~Ln~L-P~e~~~lv~------Lq~LnlS~NrFr~l  473 (565)
T KOG0472|consen  414 --VTDLVLSNNKISFVPL-ELSQL-----QKLTFLDLSNNLLNDL-PEEMGSLVR------LQTLNLSFNRFRML  473 (565)
T ss_pred             --HHHHHhhcCccccchH-HHHhh-----hcceeeecccchhhhc-chhhhhhhh------hheecccccccccc
Confidence              3345556655554332 24443     6688888888777643 333444444      78888888876654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=6.3e-21  Score=200.58  Aligned_cols=247  Identities=23%  Similarity=0.236  Sum_probs=160.5

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      .+|+++++++|+++.     ++..+..+.+|+.++..+|++     ..++..+....+|+.|.+..|.+.     .++..
T Consensus       241 ~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l-----~~lp~ri~~~~~L~~l~~~~nel~-----yip~~  305 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRL-----VALPLRISRITSLVSLSAAYNELE-----YIPPF  305 (1081)
T ss_pred             ccceeeecchhhhhc-----chHHHHhcccceEecccchhH-----HhhHHHHhhhhhHHHHHhhhhhhh-----hCCCc
Confidence            456666666666555     344555556666666666666     445555555666666666666543     33344


Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                      +.+.++|++|+|..|++.+.....+.    .....+..|+.+.|.+...-    .-.=...+.|+.|.+.+|.++|.   
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~~~l~----v~~~~l~~ln~s~n~l~~lp----~~~e~~~~~Lq~LylanN~Ltd~---  374 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPDNFLA----VLNASLNTLNVSSNKLSTLP----SYEENNHAALQELYLANNHLTDS---  374 (1081)
T ss_pred             ccccceeeeeeehhccccccchHHHh----hhhHHHHHHhhhhccccccc----cccchhhHHHHHHHHhcCccccc---
Confidence            55677888888888877654332111    11113566666666555421    00012345688888999999987   


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                       ....+-..++|+.|+|++|+++......+.++    +.|++|+||||+++.     ++..+..+..|++|...+|++..
T Consensus       375 -c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSGNkL~~-----Lp~tva~~~~L~tL~ahsN~l~~  444 (1081)
T KOG0618|consen  375 -CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSGNKLTT-----LPDTVANLGRLHTLRAHSNQLLS  444 (1081)
T ss_pred             -chhhhccccceeeeeecccccccCCHHHHhch----HHhHHHhcccchhhh-----hhHHHHhhhhhHHHhhcCCceee
Confidence             44556667889999999998887665555555    889999999998865     44555667789999999888865


Q ss_pred             hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      .+  .++.    .+.|+.+|++.|+++.......   .+.  ++|++||++||.
T Consensus       445 fP--e~~~----l~qL~~lDlS~N~L~~~~l~~~---~p~--p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  445 FP--ELAQ----LPQLKVLDLSCNNLSEVTLPEA---LPS--PNLKYLDLSGNT  487 (1081)
T ss_pred             ch--hhhh----cCcceEEecccchhhhhhhhhh---CCC--cccceeeccCCc
Confidence            43  3444    4899999999998887654332   221  789999999995

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.74  E-value=4.2e-17  Score=149.11  Aligned_cols=251  Identities=20%  Similarity=0.231  Sum_probs=159.0

Q ss_pred             HhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCC------HHHHHHHHHHHhcCCCcc
Q 007526          148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT------AAGIKAFDGVLQSNIALK  221 (600)
Q Consensus       148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~  221 (600)
                      ..+.+...+-+..+..+++++||||.|+.+.+..++..++.-.+|+..++++-..+      ...+.-+.+++.+||+|+
T Consensus        16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            33444444555568899999999999999999999999999999999999875321      233556667778899999


Q ss_pred             EEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc---------CCCccEEeecCCCCChhhHH
Q 007526          222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN---------NSILRVLELNNNMIDYSGFT  292 (600)
Q Consensus       222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~---------~~~L~~L~L~~n~i~~~~~~  292 (600)
                      .++||.|.++......+.+.+.+...|++|.+++|.+...+...++.++..         -|.|+......|++...   
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng---  172 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG---  172 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC---
Confidence            999999999888888888998888999999999999888777777765432         23455555555544333   


Q ss_pred             HHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCC
Q 007526          293 SLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS  372 (600)
Q Consensus       293 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~  372 (600)
                                               +....+..+.....|+++.+..|.|..+|+..+...=.....+|+.|||.+|.++
T Consensus       173 -------------------------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         173 -------------------------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             -------------------------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence                                     3333333344444455555555555554444332211112234555555555555


Q ss_pred             hhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc--CCCccEEEccCCC
Q 007526          373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNN  426 (600)
Q Consensus       373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~  426 (600)
                      ..+...++..++..+.|++|.+..|-++..|...+...+..  .++|..|-..+|.
T Consensus       228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         228 LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            55555555555555555555555555555555544444433  3444555544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.71  E-value=2.4e-16  Score=144.18  Aligned_cols=275  Identities=20%  Similarity=0.243  Sum_probs=182.5

Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC---h---HHHHHHHHHHhcCCCccEEeecCCCCChhh
Q 007526          217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR---D---EGAKAIAELLKNNSILRVLELNNNMIDYSG  290 (600)
Q Consensus       217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~---~---~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  290 (600)
                      +..+++++||+|.|+.+....++..+.+-.+|+..+++.-...   +   .....+...+..|+.|+..+|++|.++...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3445555555555555555555555544445555544433111   1   123345556667788888888888888777


Q ss_pred             HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCC
Q 007526          291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS  370 (600)
Q Consensus       291 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  370 (600)
                      ...+.+.+.+...|++|.|++|.++..+...+.+++..+-        .|+       ..     ...|.|+......|.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~nK-------Ka-----a~kp~Le~vicgrNR  168 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------YNK-------KA-----ADKPKLEVVICGRNR  168 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------HHh-------hh-----ccCCCceEEEeccch
Confidence            7788888888888888888888887777666666554321        111       01     234578888888887


Q ss_pred             CChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH-HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEE
Q 007526          371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD  449 (600)
Q Consensus       371 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  449 (600)
                      +..-+.......+..-.+|+.+.+..|.|..+|+..+. ..+..+++|+.||+..|.++..+..+++.+++.-+.|++|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            76655555566666667888888888988888776543 44566889999999999999999999999888888899999


Q ss_pred             CcCCCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhH-----HHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          450 LAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASG-----AEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       450 Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~-----~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      +..|-++..|...+.+.+.  ..++|..|...+|.+....     ...+.+  ...|-|..|.+.||+|..
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~--~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ--DAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhh--cccHHHHHHHHccCcchh
Confidence            9999888888887766654  3778888888888653221     111111  023455555566666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=1.9e-17  Score=179.81  Aligned_cols=267  Identities=18%  Similarity=0.183  Sum_probs=160.9

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      ..-..|+++++.++.     ++..+.  .+|+.|++.+|.++.     ++.   ..++|++|++++|+++..     +..
T Consensus       201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~LtsL-----P~l  260 (788)
T PRK15387        201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTSL-----PVL  260 (788)
T ss_pred             CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccCcc-----cCc
Confidence            445678888887764     343332  478888888887763     221   136788888888877642     221


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                         .++|++|++++|.++.     ++..   ..+|+.|++++|+++.     ++.   ..++|+.|++++|.++..+.  
T Consensus       261 ---p~sL~~L~Ls~N~L~~-----Lp~l---p~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp~--  319 (788)
T PRK15387        261 ---PPGLLELSIFSNPLTH-----LPAL---PSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA--  319 (788)
T ss_pred             ---ccccceeeccCCchhh-----hhhc---hhhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCCC--
Confidence               2577888888887664     2222   1457778888887742     222   23567888888877764321  


Q ss_pred             HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526          322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  401 (600)
                            ...+|+.|++++|.++..     ..    ...+|+.|++++|.++.     ++.   ..++|+.|++++|.|+.
T Consensus       320 ------lp~~L~~L~Ls~N~L~~L-----P~----lp~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~  376 (788)
T PRK15387        320 ------LPSELCKLWAYNNQLTSL-----PT----LPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS  376 (788)
T ss_pred             ------CcccccccccccCccccc-----cc----cccccceEecCCCccCC-----CCC---CCcccceehhhcccccc
Confidence                  123577777777776541     11    11267778887777775     332   12467777777777664


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526          402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC  481 (600)
Q Consensus       402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  481 (600)
                           ++..   ..+|+.|++++|.|+...     ..   .++|+.|++++|.|+...  .+      ..+|+.|++++|
T Consensus       377 -----LP~l---~~~L~~LdLs~N~Lt~LP-----~l---~s~L~~LdLS~N~LssIP--~l------~~~L~~L~Ls~N  432 (788)
T PRK15387        377 -----LPAL---PSGLKELIVSGNRLTSLP-----VL---PSELKELMVSGNRLTSLP--ML------PSGLLSLSVYRN  432 (788)
T ss_pred             -----Cccc---ccccceEEecCCcccCCC-----Cc---ccCCCEEEccCCcCCCCC--cc------hhhhhhhhhccC
Confidence                 2221   246777777777776421     11   156777777777765431  11      125667777777


Q ss_pred             CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526          482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ  521 (600)
Q Consensus       482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  521 (600)
                      +|+..+     ..+..+++|+.|+|++|.+++..+..+..
T Consensus       433 qLt~LP-----~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        433 QLTRLP-----ESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cccccC-----hHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            776432     22334477777777777777766555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.69  E-value=3.1e-17  Score=178.20  Aligned_cols=276  Identities=16%  Similarity=0.147  Sum_probs=195.6

Q ss_pred             HHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC
Q 007526          180 FFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR  259 (600)
Q Consensus       180 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~  259 (600)
                      ..+..++.  ..-..|+++++.++.     ++..+.  ++|+.|++++|+++.     ++.   ..++|++|++++|+++
T Consensus       193 ~r~~~Cl~--~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~-----LP~---lp~~Lk~LdLs~N~Lt  255 (788)
T PRK15387        193 QKMRACLN--NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLT  255 (788)
T ss_pred             HHHHHHhc--CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCC-----CCC---CCCCCcEEEecCCccC
Confidence            33444443  456789999998863     333332  479999999999875     222   2478999999999988


Q ss_pred             hHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccC
Q 007526          260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG  339 (600)
Q Consensus       260 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  339 (600)
                      ..     +..   .++|+.|++++|.++     .++.   ....|+.|++++|.++..+.        ..++|+.|++++
T Consensus       256 sL-----P~l---p~sL~~L~Ls~N~L~-----~Lp~---lp~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~  311 (788)
T PRK15387        256 SL-----PVL---PPGLLELSIFSNPLT-----HLPA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSD  311 (788)
T ss_pred             cc-----cCc---ccccceeeccCCchh-----hhhh---chhhcCEEECcCCccccccc--------cccccceeECCC
Confidence            63     221   267999999999884     3443   23578899999998875432        246899999999


Q ss_pred             CCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccE
Q 007526          340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITT  419 (600)
Q Consensus       340 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~  419 (600)
                      |+++...     .    ....|+.|++++|.++.     ++.   ...+|++|+|++|+|+.     ++..   ..+|+.
T Consensus       312 N~L~~Lp-----~----lp~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~  366 (788)
T PRK15387        312 NQLASLP-----A----LPSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELYK  366 (788)
T ss_pred             CccccCC-----C----CcccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccce
Confidence            9887521     1    12368899999998876     442   12479999999999886     3321   357889


Q ss_pred             EEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCC
Q 007526          420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN  499 (600)
Q Consensus       420 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~  499 (600)
                      |++++|.|+..     +..   ..+|+.|++++|.|+....        ..++|+.|++++|.++..+.  +      ..
T Consensus       367 L~Ls~N~L~~L-----P~l---~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~LssIP~--l------~~  422 (788)
T PRK15387        367 LWAYNNRLTSL-----PAL---PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLTSLPM--L------PS  422 (788)
T ss_pred             ehhhccccccC-----ccc---ccccceEEecCCcccCCCC--------cccCCCEEEccCCcCCCCCc--c------hh
Confidence            99999998752     222   2579999999998874321        12579999999999876532  1      14


Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHH
Q 007526          500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA  551 (600)
Q Consensus       500 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~  551 (600)
                      +|+.|++++|+|+.. +..+..+     +.|+.|+|++|++++..+..+...
T Consensus       423 ~L~~L~Ls~NqLt~L-P~sl~~L-----~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        423 GLLSLSVYRNQLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             hhhhhhhccCccccc-ChHHhhc-----cCCCeEECCCCCCCchHHHHHHHH
Confidence            688899999999864 3334444     789999999999998777777544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.63  E-value=9.4e-16  Score=167.76  Aligned_cols=126  Identities=16%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .|+.|++++|.++.     ++..+  .++|+.|++++|.++.     ++..+  .++|+.|++++|+++..     +..+
T Consensus       305 sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~L~~L-----P~~l  365 (754)
T PRK15370        305 GITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQVLDVSKNQITVL-----PETL  365 (754)
T ss_pred             hHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhh--cCcccEEECCCCCCCcC-----Chhh
Confidence            45555555555543     22211  2355555555555543     22222  14555666665555431     1111


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                        .+.|++|+|++|.++..... +.      ..|+.|++++|++... +..+.......+++..|++.+|.++..
T Consensus       366 --p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~~  430 (754)
T PRK15370        366 --PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSER  430 (754)
T ss_pred             --cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccHH
Confidence              14556666666655432111 11      1355556666655533 222333333445566666666666543

>PLN03210 Resistant to P

Probab=99.62  E-value=3.4e-16  Score=182.78  Aligned_cols=342  Identities=15%  Similarity=0.195  Sum_probs=187.5

Q ss_pred             HHHhCCCccEEEcCCCCCCH--HHHHHHHHHhccC-CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007526          157 FAKELRAFSSVDMSGRNFGD--EGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE  233 (600)
Q Consensus       157 ~~~~~~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  233 (600)
                      .+..+++|+.|.+..+....  .....++..+..+ .+|+.|.+.++.+..     ++..+ ...+|++|++++|++.. 
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~-  625 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK-  625 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-
Confidence            34556666666665443211  0000112222222 356667666665432     22111 23578888888877653 


Q ss_pred             HHHHHHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526          234 GVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN  312 (600)
Q Consensus       234 ~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  312 (600)
                          +...+..+++|+.|+|+++. +..     ++. +..+++|++|+|++|...    ..++..+..+++|+.|++++|
T Consensus       626 ----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        626 ----LWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             ----cccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCC
Confidence                34445566788888888764 332     111 344578888888877432    455667777888888888876


Q ss_pred             C-CChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcE
Q 007526          313 Y-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW  391 (600)
Q Consensus       313 ~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  391 (600)
                      . ++..+     ..+ .+++|+.|++++|.....    +.    ....+|+.|++++|.+..     ++..+ .+++|++
T Consensus       692 ~~L~~Lp-----~~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-----lP~~~-~l~~L~~  751 (1153)
T PLN03210        692 ENLEILP-----TGI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-----FPSNL-RLENLDE  751 (1153)
T ss_pred             CCcCccC-----CcC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc-----ccccc-ccccccc
Confidence            4 33222     111 467788888888753211    11    122368888888887765     44333 4567777


Q ss_pred             EEccCCCCChH--HHHHHH-HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC-CChhHHHHHHHHH
Q 007526          392 INLYMNDIGDE--GAEKIA-DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVL  467 (600)
Q Consensus       392 L~Ls~n~l~~~--~~~~l~-~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l  467 (600)
                      |++.++.....  ....+. .....+++|+.|++++|.....    ++..+.++++|+.|++++|. ++.     ++..+
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~  822 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI  822 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC
Confidence            77765432110  000000 0111246788888888754332    34445666888888888763 332     11111


Q ss_pred             hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC-CCChhHHH
Q 007526          468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGAF  546 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n-~i~~~~~~  546 (600)
                       .+++|++|++++|..-..    +...   .++|++|+|++|.|+... ..+...     ++|+.|++++| ++... +.
T Consensus       823 -~L~sL~~L~Ls~c~~L~~----~p~~---~~nL~~L~Ls~n~i~~iP-~si~~l-----~~L~~L~L~~C~~L~~l-~~  887 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRT----FPDI---STNISDLNLSRTGIEEVP-WWIEKF-----SNLSFLDMNGCNNLQRV-SL  887 (1153)
T ss_pred             -CccccCEEECCCCCcccc----cccc---ccccCEeECCCCCCccCh-HHHhcC-----CCCCEEECCCCCCcCcc-Cc
Confidence             356788888888743221    1111   257888888888777542 223332     67888888775 45532 22


Q ss_pred             HHHHHHHhCcccceeEEEccCCC
Q 007526          547 AIAQALKANEDVAVTSLNLANNF  569 (600)
Q Consensus       547 ~l~~~~~~~~~~~L~~L~l~~n~  569 (600)
                      .+..+.      .|+.+++++|.
T Consensus       888 ~~~~L~------~L~~L~l~~C~  904 (1153)
T PLN03210        888 NISKLK------HLETVDFSDCG  904 (1153)
T ss_pred             cccccc------CCCeeecCCCc
Confidence            222221      27777777763

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=6.7e-16  Score=168.91  Aligned_cols=261  Identities=20%  Similarity=0.231  Sum_probs=157.2

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526          218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA  297 (600)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  297 (600)
                      .+.+.|+++++.++..     +..+  .+.|+.|+|++|+++..     +..+.  ++|++|++++|.++.     ++..
T Consensus       178 ~~~~~L~L~~~~LtsL-----P~~I--p~~L~~L~Ls~N~LtsL-----P~~l~--~nL~~L~Ls~N~Lts-----LP~~  238 (754)
T PRK15370        178 NNKTELRLKILGLTTI-----PACI--PEQITTLILDNNELKSL-----PENLQ--GNIKTLYANSNQLTS-----IPAT  238 (754)
T ss_pred             cCceEEEeCCCCcCcC-----Cccc--ccCCcEEEecCCCCCcC-----Chhhc--cCCCEEECCCCcccc-----CChh
Confidence            3577888888777642     2221  15688888888887753     22222  578888888887752     3333


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526          298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF  377 (600)
Q Consensus       298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~  377 (600)
                      +  ..+|+.|++++|.+...+.     .+  ..+|+.|++++|+++.     +...+   ..+|+.|++++|.++.    
T Consensus       239 l--~~~L~~L~Ls~N~L~~LP~-----~l--~s~L~~L~Ls~N~L~~-----LP~~l---~~sL~~L~Ls~N~Lt~----  297 (754)
T PRK15370        239 L--PDTIQEMELSINRITELPE-----RL--PSALQSLDLFHNKISC-----LPENL---PEELRYLSVYDNSIRT----  297 (754)
T ss_pred             h--hccccEEECcCCccCcCCh-----hH--hCCCCEEECcCCccCc-----ccccc---CCCCcEEECCCCcccc----
Confidence            2  2468888888887765432     11  1368888888887764     22212   1368888888887775    


Q ss_pred             HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                       ++..+.  ++|++|++++|.++.     ++..+  .++|+.|++++|.++..     +..+  .++|+.|++++|+|+.
T Consensus       298 -LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        298 -LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL--PPELQVLDVSKNQITV  360 (754)
T ss_pred             -Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh--cCcccEEECCCCCCCc
Confidence             333222  367778888887764     22222  25788888888877652     2222  2678888888887764


Q ss_pred             hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007526          458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF  537 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~  537 (600)
                      ..     ..+  .++|++|++++|.++..+.. +.      ..|+.|++++|+++.. +..+...... .+.+..|++.+
T Consensus       361 LP-----~~l--p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~~-~~~l~~L~L~~  424 (754)
T PRK15370        361 LP-----ETL--PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRGE-GPQPTRIIVEY  424 (754)
T ss_pred             CC-----hhh--cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhhc-CCCccEEEeeC
Confidence            21     111  24788888888877755332 21      2477788888877643 2223222211 15677888888


Q ss_pred             CCCChhHHHHHHHH
Q 007526          538 NEIRDDGAFAIAQA  551 (600)
Q Consensus       538 n~i~~~~~~~l~~~  551 (600)
                      |.|.......+..+
T Consensus       425 Npls~~tl~~L~~L  438 (754)
T PRK15370        425 NPFSERTIQNMQRL  438 (754)
T ss_pred             CCccHHHHHHHHHh
Confidence            88775544444333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.61  E-value=2.1e-15  Score=146.26  Aligned_cols=256  Identities=20%  Similarity=0.251  Sum_probs=144.5

Q ss_pred             CCCcCEEEeecC-CCChHHHHHHHHHHhcCCCccEEeecCC-CCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          245 NAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       245 ~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      |+.|++|++..| .+++...+.++..   +++|++|+++.+ .|++.+++.+..   .+..++.+.+.||.  +.+.+.+
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~--e~~le~l  260 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCL--ELELEAL  260 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccc--cccHHHH
Confidence            444555555443 2444333323222   444555555544 344333343332   34445555555543  1122222


Q ss_pred             HHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCC-CC
Q 007526          323 AKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DI  399 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l  399 (600)
                      ...=..+..+.++++..| .++++++..+..+..    +|+.|+.++| .+++..+..   .-.++.+|+.|-++.+ ++
T Consensus       261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~----~lq~l~~s~~t~~~d~~l~a---Lg~~~~~L~~l~l~~c~~f  333 (483)
T KOG4341|consen  261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH----ALQVLCYSSCTDITDEVLWA---LGQHCHNLQVLELSGCQQF  333 (483)
T ss_pred             HHHhccChHhhccchhhhccccchHHHHHhhhhh----HhhhhcccCCCCCchHHHHH---HhcCCCceEEEeccccchh
Confidence            222234455566665554 566666655554333    6777777775 344432222   2345677888877777 57


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEec
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKL  478 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l  478 (600)
                      ++.|+..+..   +++.|+.+++.++....++  .++..-.+|+.|+.|.++.| .|+|+|+..+...-.....|+.+.+
T Consensus       334 sd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL  408 (483)
T KOG4341|consen  334 SDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL  408 (483)
T ss_pred             hhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence            7766554433   3577888888877655544  35555566788888888877 4777777777666566667777888


Q ss_pred             cCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHH
Q 007526          479 GWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSF  523 (600)
Q Consensus       479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l  523 (600)
                      ++|.....   ..-+.+..|++|+.+++.++ .++.++...+...+
T Consensus       409 ~n~p~i~d---~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  409 DNCPLITD---ATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             cCCCCchH---HHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            88754332   22344556678888888777 67777766666554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=5.4e-17  Score=155.91  Aligned_cols=142  Identities=21%  Similarity=0.276  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhCC-CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccC-C
Q 007526          151 KQTLNEFAKELR-AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-N  228 (600)
Q Consensus       151 ~~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n  228 (600)
                      .+++.++..++| ..++|+|..|.|+...    ..+|+.+++|+.|||++|.|+..+.++|.+.    ++|.+|-+.+ |
T Consensus        55 ~~GL~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   55 GKGLTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNN  126 (498)
T ss_pred             CCCcccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCC
Confidence            334444444554 4779999999997754    4566778999999999999988877777654    5566666655 9


Q ss_pred             CCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH-HHhhCCCccEE
Q 007526          229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSL  307 (600)
Q Consensus       229 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L  307 (600)
                      +|++..-..+..    +..|+.|.+.-|++.-.-...+.+    +++|..|.+.+|.+     +.++. .+..+..++.+
T Consensus       127 kI~~l~k~~F~g----L~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~-----q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  127 KITDLPKGAFGG----LSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKI-----QSICKGTFQGLAAIKTL  193 (498)
T ss_pred             chhhhhhhHhhh----HHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhh-----hhhccccccchhccchH
Confidence            998865544443    488888989888877654444444    48899999999987     55665 55667888888


Q ss_pred             EccCCC
Q 007526          308 HLNGNY  313 (600)
Q Consensus       308 ~L~~n~  313 (600)
                      .+..|.
T Consensus       194 hlA~np  199 (498)
T KOG4237|consen  194 HLAQNP  199 (498)
T ss_pred             hhhcCc
Confidence            887765

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.59  E-value=2e-15  Score=146.46  Aligned_cols=302  Identities=21%  Similarity=0.271  Sum_probs=195.7

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCC-CCChhhHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAE  296 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~  296 (600)
                      .|++|.+.++.=  .+...+.....+++++++|.+.+|. +++.....++   ..+++|++|++..| .+|+..+..+++
T Consensus       139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla---~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA---RYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHH---HhcchhhhhhhcccchhHHHHHHHHHH
Confidence            477777776531  2223355555667888888888774 6666554444   44788999999884 677766665554


Q ss_pred             HHhhCCCccEEEccCCC-CChHHHHHHHHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCCh
Q 007526          297 ALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISA  373 (600)
Q Consensus       297 ~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~  373 (600)
                         .+++|++|+++.|. ++..+++.+..   +++.++.+.+.|| .+..+.+..+.    .....+..+++..| .+++
T Consensus       214 ---gC~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~~lTD  283 (483)
T KOG4341|consen  214 ---GCRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCNQLTD  283 (483)
T ss_pred             ---hhhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhccccc
Confidence               58889999998886 55556655443   5666777777776 33333333222    33335677776665 4666


Q ss_pred             hhHHHHHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECc
Q 007526          374 KGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLA  451 (600)
Q Consensus       374 ~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls  451 (600)
                      +++..+.   ..+..|+.|+.+++ ++++..+..+   -.++++|+.|-+++|+ +++.+...++.   +++.|+.+++.
T Consensus       284 ~~~~~i~---~~c~~lq~l~~s~~t~~~d~~l~aL---g~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e  354 (483)
T KOG4341|consen  284 EDLWLIA---CGCHALQVLCYSSCTDITDEVLWAL---GQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLE  354 (483)
T ss_pred             hHHHHHh---hhhhHhhhhcccCCCCCchHHHHHH---hcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhccc
Confidence            6654443   45677888888776 6666532222   2347888888888884 66666554443   36888888888


Q ss_pred             CCCCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCcc
Q 007526          452 YNPIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEA  529 (600)
Q Consensus       452 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~  529 (600)
                      .+....++  .+...-.+|+.|+.|.+++| .|++.+...+...-.....|..+.|+++ .+++.....+...     ++
T Consensus       355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~  427 (483)
T KOG4341|consen  355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-----RN  427 (483)
T ss_pred             ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-----cc
Confidence            88554443  45555567888888888888 5777777777776666678888888888 4555555544443     67


Q ss_pred             ccEEEccCC-CCChhHHHHHHHH
Q 007526          530 LTSIDLAFN-EIRDDGAFAIAQA  551 (600)
Q Consensus       530 L~~L~ls~n-~i~~~~~~~l~~~  551 (600)
                      |+.+++-++ .++..++..+...
T Consensus       428 Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  428 LERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             cceeeeechhhhhhhhhHHHHhh
Confidence            888888777 4555555555443

>PLN03210 Resistant to P

Probab=99.54  E-value=1e-14  Score=170.40  Aligned_cols=309  Identities=14%  Similarity=0.126  Sum_probs=160.8

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCD  240 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~  240 (600)
                      +.|+.|++.++.+..     ++..+ ...+|++|++.+|.+..     +...+..+++|+.|+|+++. +..     ++ 
T Consensus       589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip-  651 (1153)
T PLN03210        589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKE-----IP-  651 (1153)
T ss_pred             cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCc-----CC-
Confidence            458888888876654     23333 35788888888887652     33334567888888888754 332     22 


Q ss_pred             HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526          241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN  320 (600)
Q Consensus       241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  320 (600)
                      .+..+++|+.|+|++|....    .++..+.++++|+.|++++|..-    ..++..+ .+++|+.|++++|....    
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~----  718 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRLK----  718 (1153)
T ss_pred             ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCcc----
Confidence            23456888888888875332    24555666788888888876321    2233322 56788888888875321    


Q ss_pred             HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChh--hHHHH-HHHHHhCCCCcEEEccCC
Q 007526          321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAFHV-AEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~--~~~~l-~~~l~~~~~L~~L~Ls~n  397 (600)
                      .++.   ...+|+.|++++|.+...     +..+  ..++|++|++.++.....  ....+ +......++|++|++++|
T Consensus       719 ~~p~---~~~nL~~L~L~~n~i~~l-----P~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n  788 (1153)
T PLN03210        719 SFPD---ISTNISWLDLDETAIEEF-----PSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI  788 (1153)
T ss_pred             cccc---ccCCcCeeecCCCccccc-----cccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence            1111   235678888888776431     1111  123555555554321110  00000 001122345666666665


Q ss_pred             CCChHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEE
Q 007526          398 DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL  476 (600)
Q Consensus       398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  476 (600)
                      .....    ++..+..+++|+.|++++|. +..     ++..+ .+++|++|+|++|..-..    +..   ..++|+.|
T Consensus       789 ~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~~----~p~---~~~nL~~L  851 (1153)
T PLN03210        789 PSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI-NLESLESLDLSGCSRLRT----FPD---ISTNISDL  851 (1153)
T ss_pred             CCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC-CccccCEEECCCCCcccc----ccc---cccccCEe
Confidence            43222    44445556666666666553 222     11111 235666666666521110    111   12356666


Q ss_pred             eccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526          477 KLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN  538 (600)
Q Consensus       477 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n  538 (600)
                      ++++|.|+..+     ..+..+++|+.|++++| .+..... .+...     +.|+.+++++|
T Consensus       852 ~Ls~n~i~~iP-----~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L-----~~L~~L~l~~C  903 (1153)
T PLN03210        852 NLSRTGIEEVP-----WWIEKFSNLSFLDMNGCNNLQRVSL-NISKL-----KHLETVDFSDC  903 (1153)
T ss_pred             ECCCCCCccCh-----HHHhcCCCCCEEECCCCCCcCccCc-ccccc-----cCCCeeecCCC
Confidence            66666655432     22334466666666654 3443211 11111     45556666655

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.47  E-value=2e-15  Score=145.19  Aligned_cols=282  Identities=22%  Similarity=0.196  Sum_probs=166.3

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccC-CCCChHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAK  324 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~  324 (600)
                      +.-.+++|..|+|+.....+|...    ++|+.|||++|.|+..    -+++|..++.+.+|-+-+ |+|++....    
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N~Is~I----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~----  134 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKNNISFI----APDAFKGLASLLSLVLYGNNKITDLPKG----  134 (498)
T ss_pred             CcceEEEeccCCcccCChhhccch----hhhceecccccchhhc----ChHhhhhhHhhhHHHhhcCCchhhhhhh----
Confidence            567889999999998766666555    8899999999998632    256677788888777766 888877763    


Q ss_pred             HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH-HHHhCCCCcEEEccCCC-CChH
Q 007526          325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMND-IGDE  402 (600)
Q Consensus       325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-l~~~  402 (600)
                      .|.++.+++.|.+.-|++.-.-.+.+     ...+++..|.+.+|.+..     ++. .+.....++.+.+..|. +.+-
T Consensus       135 ~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             HhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence            44577788888888887765322222     233367778888877655     444 45667778888887775 3322


Q ss_pred             HHHHHHHHhhc-------CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE--ECc-CCCCChhHHHHHHHHHhhCCC
Q 007526          403 GAEKIADALKQ-------NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL--DLA-YNPIGADGAKALSEVLKFHGN  472 (600)
Q Consensus       403 ~~~~l~~~l~~-------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L--~Ls-~n~i~~~~~~~l~~~l~~~~~  472 (600)
                      .+..+.+.+..       ..-..-..+.+.++..+....+...      ++.+  .++ .+.+....   -...++.+++
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~------~esl~s~~~~~d~~d~~c---P~~cf~~L~~  275 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS------LESLPSRLSSEDFPDSIC---PAKCFKKLPN  275 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh------HHhHHHhhccccCcCCcC---hHHHHhhccc
Confidence            22222221111       1111122223333333222222211      1111  111 11111111   1123456667


Q ss_pred             ccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHH
Q 007526          473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL  552 (600)
Q Consensus       473 L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~  552 (600)
                      |++|++++|+|+.+...+|.++    ..+++|.|..|+|....-..|...     ..|++|+|.+|+|+-..+.++..+.
T Consensus       276 L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~~f~~l-----s~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  276 LRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSGMFQGL-----SGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             ceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHHhhhcc-----ccceeeeecCCeeEEEecccccccc
Confidence            7777777777777766666666    667777777777666544444443     6677777777777766666666555


Q ss_pred             HhCcccceeEEEccCCCCchh
Q 007526          553 KANEDVAVTSLNLANNFLTKF  573 (600)
Q Consensus       553 ~~~~~~~L~~L~l~~n~l~~~  573 (600)
                      .      |.+|+|-.|++.-.
T Consensus       347 ~------l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  347 S------LSTLNLLSNPFNCN  361 (498)
T ss_pred             e------eeeeehccCcccCc
Confidence            5      77777777665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.1e-13  Score=126.81  Aligned_cols=186  Identities=15%  Similarity=0.187  Sum_probs=127.5

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCC-CCChHHHHHHHHH
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~  438 (600)
                      .|++|||++..|+...+.   ..++.|.+|+.|.+.++++.|.    +...++++.+|+.|++++| .++..+...   +
T Consensus       186 Rlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~l---l  255 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQL---L  255 (419)
T ss_pred             hhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHH---H
Confidence            688888888888776443   3467888888888888888887    6667777888999998886 566655443   3


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHH
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAK  517 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~  517 (600)
                      +.+|+.|..|+|+.|.+..+.+..+..-+  -++|+.|+++|+.- ..+...++.+.+.||+|.+|||++| .+++.-..
T Consensus       256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi--se~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~  332 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI--SETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  332 (419)
T ss_pred             HHhhhhHhhcCchHhhccchhhhHHHhhh--chhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence            55688889999988877666555544333  35788888988831 1222356666777899999999888 66664444


Q ss_pred             HHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526          518 CLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN  568 (600)
Q Consensus       518 ~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n  568 (600)
                      .+.+.     +-|++|.++.|..-  .+..+...   +...++++||+-++
T Consensus       333 ~~~kf-----~~L~~lSlsRCY~i--~p~~~~~l---~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  333 EFFKF-----NYLQHLSLSRCYDI--IPETLLEL---NSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHhc-----chheeeehhhhcCC--ChHHeeee---ccCcceEEEEeccc
Confidence            44443     67889988888422  23322221   22224888888886

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.4e-14  Score=141.29  Aligned_cols=237  Identities=17%  Similarity=0.124  Sum_probs=159.9

Q ss_pred             ccccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEE
Q 007526          144 GKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL  223 (600)
Q Consensus       144 ~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L  223 (600)
                      ..++..+.+.+.+-=+++..|+++.|.++.+.+.+..   .....|++++.|||+.|-+..  |..+.++...+|+|+.|
T Consensus       103 K~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~L  177 (505)
T KOG3207|consen  103 KQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENL  177 (505)
T ss_pred             ceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhc
Confidence            3455555566655556788899999999988876544   455668999999999998764  67778888889999999


Q ss_pred             EccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCC
Q 007526          224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENS  302 (600)
Q Consensus       224 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~  302 (600)
                      +|+.|++....-.....   ..++|+.|.|+.|+++..   .+...+..+|+|+.|+|.+|. +..   .  ......+.
T Consensus       178 Nls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~---~--~~~~~i~~  246 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILI---K--ATSTKILQ  246 (505)
T ss_pred             ccccccccCCccccchh---hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccce---e--cchhhhhh
Confidence            99999865321111111   248899999999999854   455556678999999999984 321   1  11223467


Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHH-HhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSISAKGAFHVAE  381 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  381 (600)
                      .|++|+|++|.+.+....   .....++.|+.|+++.+.+.+....... .......++|++|++..|+|.+-.   ...
T Consensus       247 ~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~  320 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLN  320 (505)
T ss_pred             HHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccc
Confidence            899999999987554322   3455788899999998887653221110 001123457888888888875510   113


Q ss_pred             HHHhCCCCcEEEccCCCCChH
Q 007526          382 YIKNCKSLLWINLYMNDIGDE  402 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~n~l~~~  402 (600)
                      .+..+++|++|.+..|.++.+
T Consensus       321 ~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  321 HLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhhccchhhhhhccccccccc
Confidence            455667777777777776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.2e-12  Score=119.03  Aligned_cols=245  Identities=18%  Similarity=0.224  Sum_probs=166.1

Q ss_pred             cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHHHHHHHHHh
Q 007526          248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGL  326 (600)
Q Consensus       248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l  326 (600)
                      =+.+++.+-.|....   +...+.  .....+.+....+.+..+   ++.+.- -..|++|||+...++.....   ..+
T Consensus       138 W~~lDl~~r~i~p~~---l~~l~~--rgV~v~Rlar~~~~~prl---ae~~~~frsRlq~lDLS~s~it~stl~---~iL  206 (419)
T KOG2120|consen  138 WQTLDLTGRNIHPDV---LGRLLS--RGVIVFRLARSFMDQPRL---AEHFSPFRSRLQHLDLSNSVITVSTLH---GIL  206 (419)
T ss_pred             eeeeccCCCccChhH---HHHHHh--CCeEEEEcchhhhcCchh---hhhhhhhhhhhHHhhcchhheeHHHHH---HHH
Confidence            467888887777654   333333  567777777666655333   333222 24699999999888765544   456


Q ss_pred             hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                      ..|..|+.|.+.++.+.+..+..++     ...+|+.|+++.| +++..++.-+   +.+|+.|.+|+|+.|.+..+.+.
T Consensus       207 s~C~kLk~lSlEg~~LdD~I~~~iA-----kN~~L~~lnlsm~sG~t~n~~~ll---~~scs~L~~LNlsWc~l~~~~Vt  278 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGLRLDDPIVNTIA-----KNSNLVRLNLSMCSGFTENALQLL---LSSCSRLDELNLSWCFLFTEKVT  278 (419)
T ss_pred             HHHHhhhhccccccccCcHHHHHHh-----ccccceeeccccccccchhHHHHH---HHhhhhHhhcCchHhhccchhhh
Confidence            6889999999999999987555553     3348999999986 6887765544   68899999999999988776655


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCcC-C
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-I  483 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-i  483 (600)
                      .+...++  ++|+.|+++|++-. .+...+..+...||+|.+|||+.| .++++.+.    .+.+.+.|++|.++.|. |
T Consensus       279 v~V~his--e~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  279 VAVAHIS--ETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             HHHhhhc--hhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccccCchHHH----HHHhcchheeeehhhhcCC
Confidence            5554443  68999999998421 122346666777999999999987 56664333    33456789999999995 3


Q ss_pred             ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHH
Q 007526          484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF  523 (600)
Q Consensus       484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  523 (600)
                      .......    +...|.|.+||+.++ +.|.....+.+++
T Consensus       352 ~p~~~~~----l~s~psl~yLdv~g~-vsdt~mel~~e~~  386 (419)
T KOG2120|consen  352 IPETLLE----LNSKPSLVYLDVFGC-VSDTTMELLKEML  386 (419)
T ss_pred             ChHHeee----eccCcceEEEEeccc-cCchHHHHHHHhC
Confidence            3222222    234588999998875 3343445455553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=4.5e-14  Score=137.91  Aligned_cols=242  Identities=19%  Similarity=0.158  Sum_probs=144.9

Q ss_pred             EEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhC
Q 007526          166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN  245 (600)
Q Consensus       166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  245 (600)
                      .+.+++..++-.|+..++.-=++.++|+++.|.++.+...+..   +....|++++.||||+|-+..  +..++.....+
T Consensus        97 ~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqL  171 (505)
T KOG3207|consen   97 VLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQL  171 (505)
T ss_pred             HhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhc
Confidence            3445555666667777777666788999999999987765554   345668899999999998754  45566777778


Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCC-CChHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAK  324 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~  324 (600)
                      ++|+.|+|+.|++..-.-.....   .+++|+.|.|+.|.++...+..+   +..+++|+.|+|..|. +..   +..  
T Consensus       172 p~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~---~~~--  240 (505)
T KOG3207|consen  172 PSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILI---KAT--  240 (505)
T ss_pred             ccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccce---ecc--
Confidence            99999999988754321111111   23667888888888876544443   3457788888887774 211   111  


Q ss_pred             HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH--HHHHHHhCCCCcEEEccCCCCChH
Q 007526          325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH--VAEYIKNCKSLLWINLYMNDIGDE  402 (600)
Q Consensus       325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~--l~~~l~~~~~L~~L~Ls~n~l~~~  402 (600)
                      ...-+..|++|+|++|++-+.......    ...+.|+.|+++.|.+.+.....  ..+....+++|++|++..|+|.+.
T Consensus       241 ~~~i~~~L~~LdLs~N~li~~~~~~~~----~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w  316 (505)
T KOG3207|consen  241 STKILQTLQELDLSNNNLIDFDQGYKV----GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW  316 (505)
T ss_pred             hhhhhhHHhhccccCCccccccccccc----ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence            111235677777777766543321221    23346777777777666521100  011134456677777777766542


Q ss_pred             HHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526          403 GAEKIADALKQNRTITTIDLGGNNIHSK  430 (600)
Q Consensus       403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~  430 (600)
                      .   ....+..+++|+.|.+..|.++.+
T Consensus       317 ~---sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  317 R---SLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             c---ccchhhccchhhhhhccccccccc
Confidence            1   112233345666666666655443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.21  E-value=9.7e-14  Score=118.74  Aligned_cols=157  Identities=20%  Similarity=0.273  Sum_probs=111.7

Q ss_pred             CCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526          245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK  324 (600)
Q Consensus       245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  324 (600)
                      +.+++.|-|++|+++..     +..+..+.+|+.|++.+|+|     +.++..+..+++|+.|+++-|.+.     .++.
T Consensus        32 ~s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-----~lpr   96 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-----ILPR   96 (264)
T ss_pred             hhhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-----cCcc
Confidence            35566666677766542     22233336777777777777     566777777778888877766553     3446


Q ss_pred             HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526          325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA  404 (600)
Q Consensus       325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  404 (600)
                      .|+.+|.|+.||+.+|++....+..-+-.+    ..|+.|+|++|.+.-     ++..++++++|+.|.+..|++-.   
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff~m----~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~---  164 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFFYM----TTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLS---  164 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchhHH----HHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhh---
Confidence            677888888888888887654332222222    268888999988766     77888999999999999997765   


Q ss_pred             HHHHHHhhcCCCccEEEccCCCCChH
Q 007526          405 EKIADALKQNRTITTIDLGGNNIHSK  430 (600)
Q Consensus       405 ~~l~~~l~~~~~L~~L~L~~n~l~~~  430 (600)
                        ++..+..+.+|++|++.+|+++-.
T Consensus       165 --lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  165 --LPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             --CcHHHHHHHHHHHHhcccceeeec
Confidence              667777788999999999988753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.06  E-value=4.3e-13  Score=114.81  Aligned_cols=157  Identities=20%  Similarity=0.234  Sum_probs=116.4

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .+.+++.|.||+|.++.     ++.-+..+.+|+.|++++|+|+     .++..+++++.|+.|++.-|++..     ++
T Consensus        31 ~~s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie-----~lp~~issl~klr~lnvgmnrl~~-----lp   95 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIE-----ELPTSISSLPKLRILNVGMNRLNI-----LP   95 (264)
T ss_pred             chhhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhh-----hcChhhhhchhhhheecchhhhhc-----Cc
Confidence            45667888888888765     4555666789999999998875     455666778889999998887653     66


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      .+++..+.|+.|+|++|++.+..   ++..+-.+..|+.|++++|.+     +.++..++++++|+.|.+..|.+-    
T Consensus        96 rgfgs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndf-----e~lp~dvg~lt~lqil~lrdndll----  163 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDF-----EILPPDVGKLTNLQILSLRDNDLL----  163 (264)
T ss_pred             cccCCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCc-----ccCChhhhhhcceeEEeeccCchh----
Confidence            77778888999999988877643   222222336688888888887     667777888888999988888753    


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCc
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGD  344 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~  344 (600)
                       .+++.++.+..|++|++.+|+++-
T Consensus       164 -~lpkeig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  164 -SLPKEIGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             -hCcHHHHHHHHHHHHhcccceeee
Confidence             334555667778888888887653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=2.6e-10  Score=106.54  Aligned_cols=162  Identities=21%  Similarity=0.183  Sum_probs=110.9

Q ss_pred             hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526          385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS  464 (600)
Q Consensus       385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  464 (600)
                      ..+.|+++|||+|.|+.     +.+.++-.+.++.|++++|.|...+-  ++    ..++|+.|||++|.++...-  +-
T Consensus       282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La----~L~~L~~LDLS~N~Ls~~~G--wh  348 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LA----ELPQLQLLDLSGNLLAECVG--WH  348 (490)
T ss_pred             hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hh----hcccceEeecccchhHhhhh--hH
Confidence            34578999999998876     55666667899999999999987543  33    34999999999997754321  11


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH-HHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE-GAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                         ..+.++++|.+++|.|.+.      ..+.++-+|..||+++|+|... .+..+...     +-|+++.|.+|.+.+.
T Consensus       349 ---~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  349 ---LKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS  414 (490)
T ss_pred             ---hhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence               2356999999999988654      3345558899999999998864 34445444     7799999999988742


Q ss_pred             H---HHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          544 G---AFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       544 ~---~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      .   ...++..-.     .-.++.|.+-.=.....++.
T Consensus       415 vdYRTKVLa~FGE-----RaSE~~LD~~~~~~~ELDTV  447 (490)
T KOG1259|consen  415 VDYRTKVLARFGE-----RASEISLDNEPGNQQELDTV  447 (490)
T ss_pred             chHHHHHHHHHhh-----hhhheecCCCCcchhhhhHH
Confidence            2   222222222     24566676654444333333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=8e-11  Score=109.86  Aligned_cols=128  Identities=24%  Similarity=0.202  Sum_probs=71.0

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .|++|||++|.|+.     +-+...-.|.++.|++|.|.|...      +.+..+++|..||+++|.++...     .+=
T Consensus       285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v------~nLa~L~~L~~LDLS~N~Ls~~~-----Gwh  348 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV------QNLAELPQLQLLDLSGNLLAECV-----GWH  348 (490)
T ss_pred             hhhhccccccchhh-----hhhhhhhccceeEEeccccceeee------hhhhhcccceEeecccchhHhhh-----hhH
Confidence            46666666666655     555555666666666666666542      12445566666666666655421     111


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ...-+++.|.|++|.|.+.      ..+..+-+|..||+++|+|......   ..+.++|.|+.+.|.+|.+.
T Consensus       349 ~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCCcc
Confidence            1225566666666655332      2223344666667776666443221   23344477777777777554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=2e-10  Score=102.96  Aligned_cols=107  Identities=31%  Similarity=0.403  Sum_probs=23.0

Q ss_pred             CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526          330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD  409 (600)
Q Consensus       330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  409 (600)
                      ..+++|+|.+|.|+.  ++.+.    ....+|+.|++++|.|+.     + +.+..+++|++|++++|.|++.     .+
T Consensus        19 ~~~~~L~L~~n~I~~--Ie~L~----~~l~~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i-----~~   81 (175)
T PF14580_consen   19 VKLRELNLRGNQIST--IENLG----ATLDKLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSI-----SE   81 (175)
T ss_dssp             -------------------S------TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S------CH
T ss_pred             ccccccccccccccc--ccchh----hhhcCCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcc-----cc
Confidence            345666666665543  11121    122245555555555554     2 1234455555555555555542     11


Q ss_pred             Hh-hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          410 AL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       410 ~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                      .+ ..+++|++|++++|+|.+...  + ..+..+++|++|+|.+|+++
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGG
T ss_pred             chHHhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCccc
Confidence            11 123455555555555433211  1 12233355555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=1.5e-10  Score=103.77  Aligned_cols=128  Identities=23%  Similarity=0.262  Sum_probs=38.4

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      .+++|+|.+|.|+.     + +.+. .+.+|+.|++++|.|...      +.+..++.|++|++++|+|++.+. .+.  
T Consensus        20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~-~l~--   84 (175)
T PF14580_consen   20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE-GLD--   84 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHH--
T ss_pred             cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc-chH--
Confidence            46666666666655     2 2233 355666666666666652      234445666666666666665321 111  


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR  507 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  507 (600)
                       ..+++|++|++++|+|.+...  + ..+..+++|+.|++.+|.+++. ...-...+..+|+|+.||-.
T Consensus        85 -~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   85 -KNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -HH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred             -HhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence             123666666666666654321  1 2234556666666666666543 22233344455666666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.67  E-value=1.5e-08  Score=105.90  Aligned_cols=151  Identities=29%  Similarity=0.352  Sum_probs=81.1

Q ss_pred             CccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhh
Q 007526          275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL  354 (600)
Q Consensus       275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  354 (600)
                      +|+.|++++|.+     ..++..+..++.|+.|++++|.+++.+.     .....+.|+.|++++|++.+.....     
T Consensus       141 nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~~l~~~~-----  205 (394)
T COG4886         141 NLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKISDLPPEI-----  205 (394)
T ss_pred             hcccccccccch-----hhhhhhhhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccccCchhh-----
Confidence            455555555555     2333344455556666666655544332     1113455666666666655422110     


Q ss_pred             hcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526          355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA  434 (600)
Q Consensus       355 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  434 (600)
                       .....|++|++++|.+..     ....+.+++++..+.+.+|++.+     +...+..++.+++|++++|.+++...  
T Consensus       206 -~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~--  272 (394)
T COG4886         206 -ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSISS--  272 (394)
T ss_pred             -hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccccc--
Confidence             011146677777664322     33445666666666666666554     23344555667777777777766432  


Q ss_pred             HHHHhhcCCCcCEEECcCCCCCh
Q 007526          435 IARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       435 l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                          +....+|+.|++++|.+..
T Consensus       273 ----~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         273 ----LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             ----ccccCccCEEeccCccccc
Confidence                3333677777777775543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.66  E-value=1.5e-08  Score=105.70  Aligned_cols=196  Identities=26%  Similarity=0.308  Sum_probs=106.3

Q ss_pred             cEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCCchHHHHHHHhhh
Q 007526          277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLS  355 (600)
Q Consensus       277 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~  355 (600)
                      ..+++..+.+...     ...+.....++.|++.+|.+++...     ..... ++|+.|++++|.+....     ..+ 
T Consensus        96 ~~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~~l~-----~~~-  159 (394)
T COG4886          96 PSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIESLP-----SPL-  159 (394)
T ss_pred             ceeeccccccccC-----chhhhcccceeEEecCCcccccCcc-----ccccchhhcccccccccchhhhh-----hhh-
Confidence            3567777765211     1222334677777777777665432     12223 26777777777765421     111 


Q ss_pred             cCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHH
Q 007526          356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI  435 (600)
Q Consensus       356 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  435 (600)
                      ...++|+.|++++|.+.+     ++......+.|+.|++++|++.+     ++..+.....|++|.+++|.+..     .
T Consensus       160 ~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~  224 (394)
T COG4886         160 RNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----L  224 (394)
T ss_pred             hccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----c
Confidence            233467777777777666     44444466677777777776665     33322233456677777664211     1


Q ss_pred             HHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                      ...+....++..+.+.+|++.+.     ...+...+++++|++++|++++...      +....+++.|++++|.+...
T Consensus       225 ~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         225 LSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             chhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc------ccccCccCEEeccCcccccc
Confidence            12233346666666666655431     1233444556666666666665533      22336666666666655543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.65  E-value=2.3e-07  Score=99.72  Aligned_cols=251  Identities=24%  Similarity=0.290  Sum_probs=110.7

Q ss_pred             CCCcCEEEeecC-CCChHHHHHHHHHHhcCCCccEEeecCC--CCChhhHHHHHHHHhhCCCccEEEccCCC-CChHHHH
Q 007526          245 NAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN--MIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGAN  320 (600)
Q Consensus       245 ~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~  320 (600)
                      ++.|+.|.+.++ .+++.+   +......++.|+.|+++++  .++..+... ......+.+|+.|+++++. +++.+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLL-LLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHh-hhhhhhcCCcCccchhhhhccCchhHH
Confidence            466666666665 344433   3333444566666666652  222111111 1122234555555555555 5555544


Q ss_pred             HHHHHhhcCCCCCEEEccCCC-CCchHHHHHHHhhhcCCCcccEEECcCCCC-ChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526          321 ALAKGLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSI-SAKGAFHVAEYIKNCKSLLWINLYMND  398 (600)
Q Consensus       321 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~  398 (600)
                      .++.   .|++|++|.+.++. +++.++..+...+.    .|++|+++.|.. ++.++..+   ..++++++.|.+....
T Consensus       263 ~l~~---~c~~L~~L~l~~c~~lt~~gl~~i~~~~~----~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  263 ALAS---RCPNLETLSLSNCSNLTDEGLVSIAERCP----SLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSLN  332 (482)
T ss_pred             HHHh---hCCCcceEccCCCCccchhHHHHHHHhcC----cccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhcC
Confidence            4443   25555555555554 45555555543332    455555555432 22222222   2334444444332221


Q ss_pred             CChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEec
Q 007526          399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL  478 (600)
Q Consensus       399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l  478 (600)
                      -              +..++.+.+.++..... .......+..|++|+.+.+.++.+++.+.   ...+..|++|     
T Consensus       333 ~--------------c~~l~~~~l~~~~~~~~-d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l-----  389 (482)
T KOG1947|consen  333 G--------------CPSLTDLSLSGLLTLTS-DDLAELILRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNL-----  389 (482)
T ss_pred             C--------------CccHHHHHHHHhhccCc-hhHhHHHHhcCCCcchhhhhhhhccCcch---HHHhcCCccc-----
Confidence            0              12222222222211100 00111223445777777776665444332   1112233333     


Q ss_pred             cCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC-CCChhHH
Q 007526          479 GWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGA  545 (600)
Q Consensus       479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n-~i~~~~~  545 (600)
                           + ...   ......+..++.|+++.+ .+++..+......+    ..++.+++.++ .+.....
T Consensus       390 -----~-~~l---~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~~  445 (482)
T KOG1947|consen  390 -----T-ESL---ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSC----SNLKDLDLSGCRVITLKSL  445 (482)
T ss_pred             -----c-hHH---HHHhccCCccceEecccCccccccchHHHhhhh----hccccCCccCcccccchhh
Confidence                 1 111   111112233778888777 46666655554421    55777777777 3443333

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.61  E-value=4.9e-09  Score=109.06  Aligned_cols=127  Identities=19%  Similarity=0.134  Sum_probs=61.6

Q ss_pred             CcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHh
Q 007526          389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK  468 (600)
Q Consensus       389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  468 (600)
                      |...+.++|.+.-     +-.++.-++.|+.|||++|++++..      .++.|+.|++|||++|.+....  .+..  .
T Consensus       166 L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp--~l~~--~  230 (1096)
T KOG1859|consen  166 LATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVP--QLSM--V  230 (1096)
T ss_pred             HhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhcccc--ccch--h
Confidence            4444445554432     2233333455566666666665532      2333466666666666543321  1111  1


Q ss_pred             hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      .| .|+.|++++|.++..  ..    +.++.+|+.||+++|.|.+..-..+.-.+    ..|+.|+|.||.+-
T Consensus       231 gc-~L~~L~lrnN~l~tL--~g----ie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  231 GC-KLQLLNLRNNALTTL--RG----IENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC  292 (1096)
T ss_pred             hh-hheeeeecccHHHhh--hh----HHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence            12 466666666665443  12    23336677777777655543211111111    34666777777664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.60  E-value=1.9e-09  Score=112.83  Aligned_cols=247  Identities=24%  Similarity=0.260  Sum_probs=130.5

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .+..++.++++.+.+..     +...+..+++|+.|++.+|.|..     +...+..+++|++|++++|.|++.      
T Consensus        70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~-----i~~~l~~~~~L~~L~ls~N~I~~i------  133 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEK-----IENLLSSLVNLQVLDLSFNKITKL------  133 (414)
T ss_pred             HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhh-----cccchhhhhcchheeccccccccc------
Confidence            34445555566665554     23445556788888888887642     222245567788888888887664      


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      ..+..++.|+.|++++|.|+...      .+..++.|+.+++++|.+++..-.   . +..+.+++.+.+.+|.+.....
T Consensus       134 ~~l~~l~~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  134 EGLSTLTLLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             cchhhccchhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc
Confidence            33344466888888888776631      122246777788888877532111   1 3456777777777776654322


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCC--cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  397 (600)
                            +..+..+..+++..|.++...  .+     ....  .|+.+++++|.+..     +...+..++.+..|++..|
T Consensus       204 ------~~~~~~l~~~~l~~n~i~~~~--~l-----~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  204 ------LDLLKKLVLLSLLDNKISKLE--GL-----NELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             ------hHHHHHHHHhhcccccceecc--Cc-----ccchhHHHHHHhcccCcccc-----ccccccccccccccchhhc
Confidence                  112233344456666554310  00     0000  26666677766655     2234455666666666666


Q ss_pred             CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                      .+...      ..+.....+..+....+.+.......-.......++++.+.+.+|.+.
T Consensus       266 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  266 RISNL------EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             ccccc------ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            65542      112223444444555554442211111111223355666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=6.9e-08  Score=90.56  Aligned_cols=111  Identities=27%  Similarity=0.317  Sum_probs=61.1

Q ss_pred             CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526          191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL  270 (600)
Q Consensus       191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l  270 (600)
                      -++-|.+.++.|..+|.....+  ..++.++++||.+|+|++.  ..++..+.+++.|+.|+|+.|.+... ++.++   
T Consensus        46 a~ellvln~~~id~~gd~~~~~--~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~-I~~lp---  117 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFG--SSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---  117 (418)
T ss_pred             chhhheecCCCCCcchhHHHHH--HHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence            4445666666666554433222  3346677777777777653  44556666677777777777766542 11111   


Q ss_pred             hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526          271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN  312 (600)
Q Consensus       271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  312 (600)
                      ....+|+.|-|.+..+..   ......+..++.+++|+++.|
T Consensus       118 ~p~~nl~~lVLNgT~L~w---~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSW---TQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccccceEEEEEcCCCCCh---hhhhhhhhcchhhhhhhhccc
Confidence            123566666666665543   222333334555555555555

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.54  E-value=2.6e-09  Score=111.74  Aligned_cols=129  Identities=26%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      +..++.+++..|.+..     +...+..+.+|+.|++.+|+|...     ...+..+++|++|++++|.|++.      .
T Consensus        71 l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i------~  134 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKL------E  134 (414)
T ss_pred             hHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccc------c
Confidence            3566666666666542     223344556677777777776542     22144456777777777766653      1


Q ss_pred             HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG  343 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  343 (600)
                      .+..++.|+.|++++|.|++      ...+..+..|+.+++++|.+......   . +..+.+++.+.+.+|.+.
T Consensus       135 ~l~~l~~L~~L~l~~N~i~~------~~~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSGNLISD------ISGLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             chhhccchhhheeccCcchh------ccCCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchh
Confidence            12223556667777776643      11222355666666666665443321   0 234455556666665544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.54  E-value=1.4e-06  Score=93.57  Aligned_cols=235  Identities=23%  Similarity=0.278  Sum_probs=137.0

Q ss_pred             hCCCccEEEccCCC-CChHHHHHHHHHhhcCCCCCEEEccCC--CCCchHHHHHHHhhhcCCCcccEEECcCCC-CChhh
Q 007526          300 ENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKG  375 (600)
Q Consensus       300 ~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~  375 (600)
                      .++.|+.|.+.++. +++.+   +......++.|++|+++++  .+...+.....  +.....+|+.|+++.+. +++.+
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh
Confidence            47899999998884 55444   3344557889999999873  22222211111  22333588999999987 88876


Q ss_pred             HHHHHHHHHhCCCCcEEEccCCC-CChHHHHHHHHHhhcCCCccEEEccCCCC-ChHHHHHHHHHhhcCCCcCEEECcCC
Q 007526          376 AFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYN  453 (600)
Q Consensus       376 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n  453 (600)
                      +..+.   ..|++|++|.+.++. +++.|+..+...   ++.|++|++++|.. ++.+...+   ..+|++|+.|.+...
T Consensus       261 l~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  261 LSALA---SRCPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHHH---hhCCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhc
Confidence            66555   338899999988886 888887766553   67799999998854 34444444   444777777665443


Q ss_pred             C----CChhHHHHH---------HHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHH
Q 007526          454 P----IGADGAKAL---------SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCL  519 (600)
Q Consensus       454 ~----i~~~~~~~l---------~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l  519 (600)
                      .    +++.+...+         .-.+..+++++.+.+.++.+.+.+.              .+.+.+| .++ .+....
T Consensus       332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~l~~~  396 (482)
T KOG1947|consen  332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ESLELR  396 (482)
T ss_pred             CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hHHHHH
Confidence            2    333322111         1112334455555555444333221              2333333 233 222222


Q ss_pred             HHHHhhcCccccEEEccCC-CCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          520 AQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n-~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      ...    ...++.|+++.+ ..++.........   +.  .++.+++.++....
T Consensus       397 ~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~~--~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  397 LCR----SDSLRVLNLSDCRLVTDKGLRCLADS---CS--NLKDLDLSGCRVIT  441 (482)
T ss_pred             hcc----CCccceEecccCccccccchHHHhhh---hh--ccccCCccCccccc
Confidence            221    123899999988 4666666655543   11  27888888875444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.8e-08  Score=105.01  Aligned_cols=134  Identities=16%  Similarity=0.171  Sum_probs=68.8

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .++.|||+.|++++.      +.+..|++|++|||++|.+...     +..-..-..|..|.+.+|.++..  ..+.+  
T Consensus       188 ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~v-----p~l~~~gc~L~~L~lrnN~l~tL--~gie~--  252 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRHV-----PQLSMVGCKLQLLNLRNNALTTL--RGIEN--  252 (1096)
T ss_pred             Hhhhhccchhhhhhh------HHHHhcccccccccccchhccc-----cccchhhhhheeeeecccHHHhh--hhHHh--
Confidence            577777777777663      2566777777777777766541     11000012367777777766542  12223  


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh--HHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS--GAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                        +++|+.||+++|-|.+..--...   ..+..|+.|++.||.+---  .-.+.+..+..+.-=..+-|.+-.|+.
T Consensus       253 --LksL~~LDlsyNll~~hseL~pL---wsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~f~LDgk~l~~  323 (1096)
T KOG1859|consen  253 --LKSLYGLDLSYNLLSEHSELEPL---WSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVKFKLDGKALGG  323 (1096)
T ss_pred             --hhhhhccchhHhhhhcchhhhHH---HHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcceEecceeccc
Confidence              36677777777765443221111   1122566777777755222  122233333333233345555554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.50  E-value=8.2e-07  Score=97.17  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=18.9

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCC
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN  284 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n  284 (600)
                      -++...++.+..+.....    .++.... |+.|.|.+-
T Consensus        60 f~ltki~l~~~~~~~~~~----~~l~~~~-L~sl~LGnl   93 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTL----EMLRKQD-LESLKLGNL   93 (699)
T ss_pred             heeEEeeccceecchhHH----HHHhhcc-ccccCCcch
Confidence            556777777666655433    2233223 777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.46  E-value=1.3e-06  Score=95.71  Aligned_cols=117  Identities=17%  Similarity=0.188  Sum_probs=47.3

Q ss_pred             CCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH
Q 007526          329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA  408 (600)
Q Consensus       329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  408 (600)
                      +|+|+.|.+++-.+..+.+..++.    ..|+|..||+|+++++.     + ..++.+++|+.|.+.+=.+...  ..+ 
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~----sFpNL~sLDIS~TnI~n-----l-~GIS~LknLq~L~mrnLe~e~~--~~l-  213 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCA----SFPNLRSLDISGTNISN-----L-SGISRLKNLQVLSMRNLEFESY--QDL-  213 (699)
T ss_pred             CcccceEEecCceecchhHHHHhh----ccCccceeecCCCCccC-----c-HHHhccccHHHHhccCCCCCch--hhH-
Confidence            444555555444443333333332    22245555555555444     1 2344455555554444333321  001 


Q ss_pred             HHhhcCCCccEEEccCCCCChHH--HHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          409 DALKQNRTITTIDLGGNNIHSKG--ASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       409 ~~l~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      ..+..+++|+.||+|........  +....+.-..+|+|+.||.|++.++.+
T Consensus       214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            12333455555555544333222  111111112235555555555544443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=2.1e-07  Score=87.34  Aligned_cols=210  Identities=16%  Similarity=0.181  Sum_probs=127.7

Q ss_pred             cEEEcCCCCCCHHHH-HHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHh
Q 007526          165 SSVDMSGRNFGDEGL-FFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILV  243 (600)
Q Consensus       165 ~~L~Ls~~~l~~~~~-~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  243 (600)
                      ..+-+-++.|...+- ..++.   .++.++++||.+|.|++  |..+..++.++|.|+.|+|++|++...    |.....
T Consensus        48 ellvln~~~id~~gd~~~~~~---~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~  118 (418)
T KOG2982|consen   48 ELLVLNGSIIDNEGDVMLFGS---SVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPL  118 (418)
T ss_pred             hhheecCCCCCcchhHHHHHH---Hhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc----cccCcc
Confidence            345556666755442 22222   25788999999998875  788888888999999999999988654    222212


Q ss_pred             hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCC-----ChhhHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526          244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMI-----DYSGFTSLAEALLENSTIRSLHLNGNYGGALG  318 (600)
Q Consensus       244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  318 (600)
                      ...+|+.|-|.+..+......   ..+..+|.++.|.++.|.+     .+...+..      .+.+++|+..+|....  
T Consensus       119 p~~nl~~lVLNgT~L~w~~~~---s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~------s~~v~tlh~~~c~~~~--  187 (418)
T KOG2982|consen  119 PLKNLRVLVLNGTGLSWTQST---SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW------STEVLTLHQLPCLEQL--  187 (418)
T ss_pred             cccceEEEEEcCCCCChhhhh---hhhhcchhhhhhhhccchhhhhcccccccccc------chhhhhhhcCCcHHHH--
Confidence            347889999998887765433   3455567788888877732     11111111      2345566666654211  


Q ss_pred             HHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526          319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND  398 (600)
Q Consensus       319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  398 (600)
                      .....+.-.-+|++..+-+..|.+.+.....-.    ...+.+..|+|+.++|.+-.   -.+.+..++.|..|.++++.
T Consensus       188 w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswa---svD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  188 WLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWA---SVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             HHHHHhHHhhcccchheeeecCcccchhhcccC----CCCCcchhhhhcccccccHH---HHHHHcCCchhheeeccCCc
Confidence            112222223456777777777766543222111    23346667788887777632   12456677888888888887


Q ss_pred             CCh
Q 007526          399 IGD  401 (600)
Q Consensus       399 l~~  401 (600)
                      +.|
T Consensus       261 l~d  263 (418)
T KOG2982|consen  261 LSD  263 (418)
T ss_pred             ccc
Confidence            766

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.45  E-value=2.7e-09  Score=108.14  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=16.5

Q ss_pred             ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526          361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG  400 (600)
Q Consensus       361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  400 (600)
                      |+.+.|..|.+..     ++..+.++..|+.|||+.|+++
T Consensus       100 Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS  134 (722)
T KOG0532|consen  100 LESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLS  134 (722)
T ss_pred             HHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhh
Confidence            4444444444433     4444445555555555555444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.30  E-value=1.9e-08  Score=102.13  Aligned_cols=79  Identities=23%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             cEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh
Q 007526          221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE  300 (600)
Q Consensus       221 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  300 (600)
                      ...||+.|++...     +..+..+..|+.+.|..|.+..     ++..+.++..|+.|||+.|++     ..++..+..
T Consensus        78 ~~aDlsrNR~~el-----p~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~Nql-----S~lp~~lC~  142 (722)
T KOG0532|consen   78 VFADLSRNRFSEL-----PEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQL-----SHLPDGLCD  142 (722)
T ss_pred             hhhhccccccccC-----chHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchh-----hcCChhhhc
Confidence            4456777766542     2222223445555555554433     333333445566666666655     333433332


Q ss_pred             CCCccEEEccCCCCC
Q 007526          301 NSTIRSLHLNGNYGG  315 (600)
Q Consensus       301 ~~~L~~L~L~~n~l~  315 (600)
                      + -|+.|-+++|+++
T Consensus       143 l-pLkvli~sNNkl~  156 (722)
T KOG0532|consen  143 L-PLKVLIVSNNKLT  156 (722)
T ss_pred             C-cceeEEEecCccc
Confidence            2 2455555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.05  E-value=2e-07  Score=68.51  Aligned_cols=16  Identities=31%  Similarity=0.418  Sum_probs=7.2

Q ss_pred             CCccEEEccCCCCChH
Q 007526          499 NTISILDLRANGLRDE  514 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~  514 (600)
                      ++|++|++++|.|+..
T Consensus        25 ~~L~~L~l~~N~l~~i   40 (61)
T PF13855_consen   25 PNLETLDLSNNNLTSI   40 (61)
T ss_dssp             TTESEEEETSSSESEE
T ss_pred             CCCCEeEccCCccCcc
Confidence            4444444444444433

...

>PLN03150 hypothetical protein; Provisional

Probab=98.05  E-value=5.9e-06  Score=90.72  Aligned_cols=86  Identities=22%  Similarity=0.295  Sum_probs=47.1

Q ss_pred             ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526          361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK  440 (600)
Q Consensus       361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  440 (600)
                      ++.|+|++|.+...    ++..+..+++|+.|+|++|.+.+.    ++..+..+++|+.|+|++|.++..    ++..+.
T Consensus       420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~  487 (623)
T PLN03150        420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLG  487 (623)
T ss_pred             EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHh
Confidence            55566666655543    445555666666666666655543    444455556666666666665543    223333


Q ss_pred             cCCCcCEEECcCCCCChh
Q 007526          441 DNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       441 ~~~~L~~L~Ls~n~i~~~  458 (600)
                      .+++|++|+|++|.++..
T Consensus       488 ~L~~L~~L~Ls~N~l~g~  505 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGR  505 (623)
T ss_pred             cCCCCCEEECcCCccccc
Confidence            445666666666655443

>PLN03150 hypothetical protein; Provisional

Probab=98.01  E-value=4.7e-06  Score=91.53  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=76.3

Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHH
Q 007526          416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML  495 (600)
Q Consensus       416 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l  495 (600)
                      .++.|+|++|.+...    ++..+..+++|+.|+|++|.+...    +...+..+++|+.|++++|.++...+..+.   
T Consensus       419 ~v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~---  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESLG---  487 (623)
T ss_pred             EEEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHHh---
Confidence            377888888888654    334455568888888888887643    333456678888888888888776554443   


Q ss_pred             hhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007526          496 RYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI  540 (600)
Q Consensus       496 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i  540 (600)
                       ++++|+.|+|++|.++...+..+....    ..+..+++.+|..
T Consensus       488 -~L~~L~~L~Ls~N~l~g~iP~~l~~~~----~~~~~l~~~~N~~  527 (623)
T PLN03150        488 -QLTSLRILNLNGNSLSGRVPAALGGRL----LHRASFNFTDNAG  527 (623)
T ss_pred             -cCCCCCEEECcCCcccccCChHHhhcc----ccCceEEecCCcc
Confidence             458888888888888876655554421    3467788888853

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.98  E-value=9.5e-07  Score=99.20  Aligned_cols=131  Identities=16%  Similarity=0.156  Sum_probs=71.5

Q ss_pred             CCCccEEEcCCCC--CCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007526          161 LRAFSSVDMSGRN--FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL  238 (600)
Q Consensus       161 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  238 (600)
                      ++.++.|-+.+|.  +...    -.+.|..++.|+.|||++|.-    ...++..++.+-+|+.|+++++.+..     +
T Consensus       544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~~-----L  610 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGISH-----L  610 (889)
T ss_pred             CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCccc-----c
Confidence            3456666666553  2111    123355667777777776541    23455556666677777777777653     6


Q ss_pred             HHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526          239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN  310 (600)
Q Consensus       239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~  310 (600)
                      +..+.++..|.+|++..+.-...    ++..+..+.+|++|.+....... + ......+..+.+|+.+...
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~-~-~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSN-D-KLLLKELENLEHLENLSIT  676 (889)
T ss_pred             chHHHHHHhhheecccccccccc----ccchhhhcccccEEEeecccccc-c-hhhHHhhhcccchhhheee
Confidence            66666777777777776643221    13333445777777776543111 1 2223333445555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=6.3e-06  Score=68.79  Aligned_cols=114  Identities=21%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM  494 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~  494 (600)
                      ..+..++|+.|++...  ......+.....|+..+|++|.+.+...+..    ...+.+++|++++|.|.+.+.+ ++.+
T Consensus        27 kE~h~ldLssc~lm~i--~davy~l~~~~el~~i~ls~N~fk~fp~kft----~kf~t~t~lNl~~neisdvPeE-~Aam   99 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYI--ADAVYMLSKGYELTKISLSDNGFKKFPKKFT----IKFPTATTLNLANNEISDVPEE-LAAM   99 (177)
T ss_pred             HHhhhcccccchhhHH--HHHHHHHhCCceEEEEecccchhhhCCHHHh----hccchhhhhhcchhhhhhchHH-Hhhh
Confidence            3455677777766532  1133344445667777777776544322111    2234667777777777666555 5554


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526          495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA  545 (600)
Q Consensus       495 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~  545 (600)
                          +.|+.|+++.|.+.... ..+...     .++-.||..+|.+-....
T Consensus       100 ----~aLr~lNl~~N~l~~~p-~vi~~L-----~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  100 ----PALRSLNLRFNPLNAEP-RVIAPL-----IKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ----HHhhhcccccCccccch-HHHHHH-----HhHHHhcCCCCccccCcH
Confidence                67777777777666542 223333     446666666665554333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.88  E-value=4.9e-07  Score=66.45  Aligned_cols=61  Identities=25%  Similarity=0.301  Sum_probs=50.8

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCC
Q 007526          499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL  570 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l  570 (600)
                      |+|++|++++|.|+......+..+     +.|++|++++|.|+......+..+.+      |++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l-----~~L~~L~l~~N~l~~i~~~~f~~l~~------L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNL-----PNLETLDLSNNNLTSIPPDAFSNLPN------LRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTG-----TTESEEEETSSSESEEETTTTTTSTT------ESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCC-----CCCCEeEccCCccCccCHHHHcCCCC------CCEEeCcCCcC
Confidence            579999999999998766666655     88999999999999877766655544      99999999975

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=4.3e-06  Score=69.74  Aligned_cols=112  Identities=17%  Similarity=0.135  Sum_probs=66.6

Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHH
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY  382 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  382 (600)
                      .+..++|+.|.+....  .....+.....|+..+|++|.+.+.     ...+....+.++.|++++|.|++     +|..
T Consensus        28 E~h~ldLssc~lm~i~--davy~l~~~~el~~i~ls~N~fk~f-----p~kft~kf~t~t~lNl~~neisd-----vPeE   95 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIA--DAVYMLSKGYELTKISLSDNGFKKF-----PKKFTIKFPTATTLNLANNEISD-----VPEE   95 (177)
T ss_pred             HhhhcccccchhhHHH--HHHHHHhCCceEEEEecccchhhhC-----CHHHhhccchhhhhhcchhhhhh-----chHH
Confidence            3445566666543211  1223334455667777777766542     22233333467777777777777     6666


Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG  431 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  431 (600)
                      +..++.|+.|+++.|.+..     .+..+..+.++..|+..+|.+-...
T Consensus        96 ~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARAEID  139 (177)
T ss_pred             HhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccccCc
Confidence            7777778888888777765     3344444566777777777655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.75  E-value=1.4e-05  Score=89.95  Aligned_cols=131  Identities=23%  Similarity=0.264  Sum_probs=77.7

Q ss_pred             CCCcCEEEeecCC--CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          245 NAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       245 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      ++.|+.|-+..|.  +....    ..++..++.|+.|||++|.-    ...+|..++.+-+|+.|+++++.+.     .+
T Consensus       544 ~~~L~tLll~~n~~~l~~is----~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-----~L  610 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEIS----GEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-----HL  610 (889)
T ss_pred             CCccceEEEeecchhhhhcC----HHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-----cc
Confidence            4568888777775  32221    12244558888888887632    2567778888888888888888765     44


Q ss_pred             HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526          323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY  395 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  395 (600)
                      +..+.+++.|.+|++..+..-...     .+.....++|++|.+..........  ....+.++.+|+.+...
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~~~~~~~--~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSALSNDKL--LLKELENLEHLENLSIT  676 (889)
T ss_pred             chHHHHHHhhheeccccccccccc-----cchhhhcccccEEEeeccccccchh--hHHhhhcccchhhheee
Confidence            566777888888888876432111     1111223478888876654222111  22334455555555553

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.54  E-value=0.0001  Score=73.97  Aligned_cols=347  Identities=17%  Similarity=0.076  Sum_probs=199.3

Q ss_pred             cCCCccEEEcccCCCCHHHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHH
Q 007526          188 YNQTAEEVSFAANGITAAGIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKA  265 (600)
Q Consensus       188 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~  265 (600)
                      ....++.+.|.-|.+..+....+.....  ..+.++++|++.|.+.+....+|.+-      .--++++.|++++..+..
T Consensus       133 ~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~  206 (553)
T KOG4242|consen  133 PSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISK  206 (553)
T ss_pred             ccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHH
Confidence            3445677777777766544444433322  24568889999998888766555532      112778888887765544


Q ss_pred             HHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHH-HHHHHHHhhcCCCCCEEEccCCCCCc
Q 007526          266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG-ANALAKGLEGNKSLRELHLHGNSIGD  344 (600)
Q Consensus       266 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~  344 (600)
                      +...-. -..+.+++++.|...+.- ..+.........++.++.++..+.-.. ...+.  ...-.++...+++.|....
T Consensus       207 l~~qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~~kls~ng~s~  282 (553)
T KOG4242|consen  207 LLIQSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTFGKLSRNGTSP  282 (553)
T ss_pred             hhhhhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhcccccc--cccccccchhhhccCCCCc
Confidence            442211 134778899888765432 222333334556777877776654321 11111  1223467777777776542


Q ss_pred             ----hHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCC--CcEEEccCCCCChHHHHHHHHHhhcCCCcc
Q 007526          345 ----EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS--LLWINLYMNDIGDEGAEKIADALKQNRTIT  418 (600)
Q Consensus       345 ----~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~  418 (600)
                          ++....-+.+ ...+++ +|++..+....+....+.-.+.....  =-.+|+..|...+..   ..++-..-..++
T Consensus       283 skg~Egg~~~k~~f-S~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q  357 (553)
T KOG4242|consen  283 SKGEEGGGAEKDTF-SPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQ  357 (553)
T ss_pred             cccccccccccccc-CcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeee
Confidence                2222221222 233466 78888887776655444322222221  234566666554432   112222234588


Q ss_pred             EEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC-----ChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHH
Q 007526          419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI-----GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD  493 (600)
Q Consensus       419 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~  493 (600)
                      +|.+..|++...+-...  .+...+.++.+++.+-.-     ...........-....-+..+.++.|.... +...+.+
T Consensus       358 ~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in  434 (553)
T KOG4242|consen  358 VLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAIN  434 (553)
T ss_pred             Eeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHH
Confidence            88888888776554333  345557788888765321     111111122222334567788888887644 3455566


Q ss_pred             HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHH
Q 007526          494 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALK  553 (600)
Q Consensus       494 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~  553 (600)
                      .+...+.+..|++++|...+.+...+.+.++ .|..++.+..+.|.+++.+...+.....
T Consensus       435 ~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~p  493 (553)
T KOG4242|consen  435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEERP  493 (553)
T ss_pred             hhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhcc
Confidence            6677788889999998888887777776654 4578888888888887766655544433

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=97.53  E-value=3.4e-05  Score=77.33  Aligned_cols=315  Identities=17%  Similarity=0.135  Sum_probs=172.1

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      .+.+++++++.|.+.+.....+.+-.      --++++.+++++.++..++.. ..-..+.+++++.|...+.....+ .
T Consensus       164 npr~r~~dls~npi~dkvpihl~~p~------~pl~lr~c~lsskfis~l~~q-sg~~~lteldls~n~~Kddip~~~-n  235 (553)
T KOG4242|consen  164 NPRARQHDLSPNPIGDKVPIHLPQPG------NPLSLRVCELSSKFISKLLIQ-SGRLWLTELDLSTNGGKDDIPRTL-N  235 (553)
T ss_pred             cchhhhhccCCCcccccCCccccCCC------CccchhhhhhhhhHHHHhhhh-hccccccccccccCCCCccchhHH-H
Confidence            34556666666655544333332211      114555555555443333311 001235666666665444322212 2


Q ss_pred             HHhcCCCccEEeecCCCCChhhHHHHHHHH--hhCCCccEEEccCCCCCh----HHHHHHHHHhhcCCCCCEEEccCCCC
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGA----LGANALAKGLEGNKSLRELHLHGNSI  342 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~----~~~~~l~~~l~~~~~L~~L~Ls~n~l  342 (600)
                      .......++.++.++..+.-   ..+...+  ..-++++..+++.|....    ++.....+.+..-+++ +|++..+..
T Consensus       236 ~~a~~~vl~~ld~s~tgirl---D~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~  311 (553)
T KOG4242|consen  236 KKAGTLVLFKLDRSTTGIRL---DLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYT  311 (553)
T ss_pred             Hhhhhhhhhcccccccccch---hhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccC
Confidence            22222346666666554431   1111111  123456666666554321    1222222333344567 778888777


Q ss_pred             CchHHHHHHHhhhcCCCcc-cEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEE
Q 007526          343 GDEGIRALMSGLSSRKGKL-AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID  421 (600)
Q Consensus       343 ~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~  421 (600)
                      .++-...+..++......+ -.+|+..|...+..   ..+.-.+-..+++|++..|.+..+|....  .+...+.++.++
T Consensus       312 psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~  386 (553)
T KOG4242|consen  312 PSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQVLLQRDNNLDGEGGAVG--KRKQSKSGRILK  386 (553)
T ss_pred             chhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeeeEeecccccccccccccc--ceeecccccccc
Confidence            7777777666554333222 45777777655432   11222223458888888887777654433  455567788887


Q ss_pred             ccCCCC---ChHHHHHHH--HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHh
Q 007526          422 LGGNNI---HSKGASAIA--RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR  496 (600)
Q Consensus       422 L~~n~l---~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~  496 (600)
                      +.+-.-   .+.+..+..  ..-...--+..+.++.|..+.. ...+...+...+.+..|++++|..++.+...+++.++
T Consensus       387 agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq  465 (553)
T KOG4242|consen  387 AGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ  465 (553)
T ss_pred             ccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhhccCcccccccccCCCcccCCCCcCccccC
Confidence            765322   111111111  1111224588888888877653 4455566677788999999999888888888888888


Q ss_pred             hCCCccEEEccCCCCChHHHHHHHH
Q 007526          497 YNNTISILDLRANGLRDEGAKCLAQ  521 (600)
Q Consensus       497 ~~~~L~~L~Ls~n~i~~~~~~~l~~  521 (600)
                      .+-+++.+..+.|.+++.+...+..
T Consensus       466 ~n~rlr~ipds~n~p~~~gl~p~~~  490 (553)
T KOG4242|consen  466 SNCRLRPIPDSLNLPEDPGLGPRNE  490 (553)
T ss_pred             CCCccCCCCCCCCCccccccchhhh
Confidence            8888999999988888876554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.53  E-value=2.3e-05  Score=70.01  Aligned_cols=106  Identities=20%  Similarity=0.192  Sum_probs=55.7

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHH
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      +...+||++|.+...      ..+..++.|.+|.+.+|.|+..     ...+.. +++|+.|.+.+|.|...+.  + .-
T Consensus        43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p  108 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP  108 (233)
T ss_pred             ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence            566677777766542      2345666677777777776652     222222 4567777777776654332  1 11


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccC
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW  480 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  480 (600)
                      +..||.|++|.+-+|++....- +=..++...++|++||+.+
T Consensus       109 La~~p~L~~Ltll~Npv~~k~~-YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHKKN-YRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hccCCccceeeecCCchhcccC-ceeEEEEecCcceEeehhh
Confidence            3345677777776666543210 0011223345555555544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=5.6e-05  Score=70.77  Aligned_cols=113  Identities=22%  Similarity=0.211  Sum_probs=72.6

Q ss_pred             CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526          386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE  465 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  465 (600)
                      +.+.+.|+..+|.++|..      ...+++.|+.|.|+-|.|+...      -+..|++|++|.|..|.|.+.  ..+ .
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL~------pl~rCtrLkElYLRkN~I~sl--dEL-~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSLA------PLQRCTRLKELYLRKNCIESL--DEL-E   82 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccch------hHHHHHHHHHHHHHhcccccH--HHH-H
Confidence            456777888888888742      2334677888888888877632      245568888888888877653  223 2


Q ss_pred             HHhhCCCccEEeccCcCC-ChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526          466 VLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRANGLRDEG  515 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  515 (600)
                      .++++++|++|.|..|.- +.-+...-...+.-+|+|+.||=  -.++.+.
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn--v~VteeE  131 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN--VPVTEEE  131 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC--ccccHHH
Confidence            346677888888887743 33344445556666788887752  2455543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.43  E-value=0.00011  Score=49.51  Aligned_cols=37  Identities=35%  Similarity=0.439  Sum_probs=18.0

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  401 (600)
                      +|++|++++|.|++     ++..+.++++|+.|++++|+|++
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence            45555555555554     44444555555555555555543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.43  E-value=0.00016  Score=48.73  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=17.1

Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH  428 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  428 (600)
                      +|++|++++|+|++     ++..+.++++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence            45555555555554     3333445555555555555554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=7.7e-05  Score=69.89  Aligned_cols=105  Identities=20%  Similarity=0.151  Sum_probs=71.7

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      +.+.++|++.+|++++..      +..+++.|+.|.||-|+|+..      ..+.+|.+|++|.|..|.|.+..  .+ .
T Consensus        18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld--EL-~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD--EL-E   82 (388)
T ss_pred             HHHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH--HH-H
Confidence            457888899999888652      235678899999998888753      44556788888888888887643  22 3


Q ss_pred             HHhcCCCccEEeecCCCCChhhHH-HHHHHHhhCCCccEEE
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFT-SLAEALLENSTIRSLH  308 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~  308 (600)
                      .++++++|+.|+|..|.-...+.. .=...+..+++|+.||
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            466778888888888865433222 2223444567777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.23  E-value=0.00013  Score=65.32  Aligned_cols=17  Identities=29%  Similarity=0.260  Sum_probs=8.6

Q ss_pred             cCCCCCEEEccCCCCCc
Q 007526          328 GNKSLRELHLHGNSIGD  344 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~~  344 (600)
                      .++.|.+|.++.|+|+.
T Consensus        62 ~l~rL~tLll~nNrIt~   78 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITR   78 (233)
T ss_pred             CccccceEEecCCccee
Confidence            44455555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00025  Score=63.59  Aligned_cols=83  Identities=23%  Similarity=0.295  Sum_probs=48.8

Q ss_pred             CcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHH
Q 007526          444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQ  521 (600)
Q Consensus       444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~  521 (600)
                      .++.+|-++..|..+|.+.+    ..++.|+.|.+.+| ++.+-+...+...   .++|+.|++++| +||+.|+.++..
T Consensus       102 ~IeaVDAsds~I~~eGle~L----~~l~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHL----RDLRSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             eEEEEecCCchHHHHHHHHH----hccchhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHHH
Confidence            45666666666665555554    33456666666666 4555555555542   366666666666 666666666655


Q ss_pred             HHhhcCccccEEEccCC
Q 007526          522 SFKVVNEALTSIDLAFN  538 (600)
Q Consensus       522 ~l~~~n~~L~~L~ls~n  538 (600)
                      .     ++|+.|.+.+=
T Consensus       175 l-----knLr~L~l~~l  186 (221)
T KOG3864|consen  175 L-----KNLRRLHLYDL  186 (221)
T ss_pred             h-----hhhHHHHhcCc
Confidence            5     55666665543

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=96.92  E-value=0.0029  Score=61.21  Aligned_cols=120  Identities=27%  Similarity=0.241  Sum_probs=67.9

Q ss_pred             CCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526          387 KSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE  465 (600)
Q Consensus       387 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  465 (600)
                      +.++..++.++ .|...-...+..++..++..+.+.+.+.+..+....+++.++..|+.|++|++.+|.|++.++..+..
T Consensus       198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~  277 (353)
T KOG3735|consen  198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR  277 (353)
T ss_pred             CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence            45556666555 45555555566666666666666666666666555566666666666666666666666666666666


Q ss_pred             HHhhCCCccEEeccCc--CCChhHHHHHHHHHhhCCCccEEEc
Q 007526          466 VLKFHGNINTLKLGWC--QIGASGAEFVADMLRYNNTISILDL  506 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n--~i~~~~~~~l~~~l~~~~~L~~L~L  506 (600)
                      ++..+.+|..+.+.+-  ..+...-..++.++..|.+|-.+-.
T Consensus       278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy  320 (353)
T KOG3735|consen  278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGY  320 (353)
T ss_pred             HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccccccc
Confidence            6666666665555432  1222223334555555555544433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.00053  Score=61.57  Aligned_cols=84  Identities=20%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVA  492 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~  492 (600)
                      ..++.+|-+++.|..+|...+...    +.++.|.+.+| .+.|.+.+.+..   ..++|+.|++++| +||+.+...+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~  173 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLL  173 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHH
Confidence            457788888888888887766555    88888888888 477777777765   3478999999988 78888887776


Q ss_pred             HHHhhCCCccEEEccCC
Q 007526          493 DMLRYNNTISILDLRAN  509 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n  509 (600)
                      ..    ++|+.|.+.+=
T Consensus       174 ~l----knLr~L~l~~l  186 (221)
T KOG3864|consen  174 KL----KNLRRLHLYDL  186 (221)
T ss_pred             Hh----hhhHHHHhcCc
Confidence            66    88888888753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.40  E-value=0.0013  Score=61.60  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=30.3

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH-HHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE-GAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                      .|+.|++.++.++..      ..+..+++|++|.++.|..... ++..+   ...+++|++|++++|+|..
T Consensus        44 ~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             chhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceeh---hhhCCceeEEeecCCcccc
Confidence            456666666655541      2234555666666666632221 11111   1223566666666665553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.00096  Score=62.45  Aligned_cols=63  Identities=24%  Similarity=0.316  Sum_probs=29.3

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCC
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN  426 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  426 (600)
                      ++|+.|+++.|.....+-  +.-....+|+|++|++++|+|.+  +..+ ..++.+.+|..|++.+|.
T Consensus        65 p~LkkL~lsdn~~~~~~~--l~vl~e~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGG--LEVLAEKAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCS  127 (260)
T ss_pred             chhhhhcccCCccccccc--ceehhhhCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCC
Confidence            356666666662222111  22223445666666666665554  1112 123334555555555553

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.24  E-value=0.0039  Score=63.43  Aligned_cols=138  Identities=18%  Similarity=0.245  Sum_probs=84.5

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC-CCChHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVK  236 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~  236 (600)
                      ++.++++++|++++|.+..     ++.   -..+|++|.+++|.-    +..+++.+.  ++|+.|++++| .+..    
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-----LP~---LP~sLtsL~Lsnc~n----LtsLP~~LP--~nLe~L~Ls~Cs~L~s----  109 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-----LPV---LPNELTEITIENCNN----LTTLPGSIP--EGLEKLTVCHCPEISG----  109 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-----cCC---CCCCCcEEEccCCCC----cccCCchhh--hhhhheEccCcccccc----
Confidence            5567999999999997765     231   235799999998752    112222232  57999999988 4431    


Q ss_pred             HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGG  315 (600)
Q Consensus       237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  315 (600)
                       ++      .+|+.|++.++....  ...++      ++|+.|.+.+++ ...   ..++..  -.++|++|++++|...
T Consensus       110 -LP------~sLe~L~L~~n~~~~--L~~LP------ssLk~L~I~~~n~~~~---~~lp~~--LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        110 -LP------ESVRSLEIKGSATDS--IKNVP------NGLTSLSINSYNPENQ---ARIDNL--ISPSLKTLSLTGCSNI  169 (426)
T ss_pred             -cc------cccceEEeCCCCCcc--cccCc------chHhheeccccccccc---cccccc--cCCcccEEEecCCCcc
Confidence             22      568999998776543  11222      357788775432 110   111110  1368999999988754


Q ss_pred             hHHHHHHHHHhhcCCCCCEEEccCC
Q 007526          316 ALGANALAKGLEGNKSLRELHLHGN  340 (600)
Q Consensus       316 ~~~~~~l~~~l~~~~~L~~L~Ls~n  340 (600)
                      ..+     ..+.  .+|+.|+++.+
T Consensus       170 ~LP-----~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        170 ILP-----EKLP--ESLQSITLHIE  187 (426)
T ss_pred             cCc-----cccc--ccCcEEEeccc
Confidence            321     1111  47889998776

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=96.19  E-value=0.038  Score=53.69  Aligned_cols=135  Identities=21%  Similarity=0.251  Sum_probs=105.7

Q ss_pred             HHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526          350 LMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH  428 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  428 (600)
                      -..-+....+.++..++++. .|....+..+.+.+...+..+.+.+.+...++.-...+...+..++.|+.|++.+|.|+
T Consensus       189 ~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFIt  268 (353)
T KOG3735|consen  189 SLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFIT  268 (353)
T ss_pred             HHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccc
Confidence            33444456668888888775 56767777788888888999999998888888777777888888999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCcCEEECcCC--CCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          429 SKGASAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       429 ~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                      +.++.++..++..+.+|+.+.+.+.  .++......+...+..+.+|-.+....-.-+
T Consensus       269 g~gi~a~~~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~fe~~g  326 (353)
T KOG3735|consen  269 GLGIMALLRALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYHFEQQG  326 (353)
T ss_pred             cHHHHHHHHHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccccCCCC
Confidence            9999999999999999999888664  3555555667778888888777666555443

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.86  E-value=0.014  Score=34.79  Aligned_cols=24  Identities=46%  Similarity=0.668  Sum_probs=12.9

Q ss_pred             CCccEEEccCCCCChHHHHHHHHH
Q 007526          499 NTISILDLRANGLRDEGAKCLAQS  522 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~~~~~l~~~  522 (600)
                      ++|++|||++|.|++.|...+++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            445555555555555555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.86  E-value=0.0098  Score=60.58  Aligned_cols=75  Identities=13%  Similarity=0.261  Sum_probs=42.7

Q ss_pred             hccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhCCCcCEEEeecC-CCChHHH
Q 007526          186 LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGA  263 (600)
Q Consensus       186 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~  263 (600)
                      +..+.+++.|++++|.++.     ++. +  -++|++|+++++ .++.     +++.+  ..+|++|++++| .+..   
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-----LP~-L--P~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s---  109 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-----LPV-L--PNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG---  109 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-----cCC-C--CCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc---
Confidence            4446788888888887653     221 1  135888888764 3321     22222  156777887777 4432   


Q ss_pred             HHHHHHHhcCCCccEEeecCCCC
Q 007526          264 KAIAELLKNNSILRVLELNNNMI  286 (600)
Q Consensus       264 ~~l~~~l~~~~~L~~L~L~~n~i  286 (600)
                        ++      .+|+.|++..+..
T Consensus       110 --LP------~sLe~L~L~~n~~  124 (426)
T PRK15386        110 --LP------ESVRSLEIKGSAT  124 (426)
T ss_pred             --cc------cccceEEeCCCCC
Confidence              22      4577777766544

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.83  E-value=0.015  Score=34.67  Aligned_cols=25  Identities=44%  Similarity=0.753  Sum_probs=13.9

Q ss_pred             CCcCEEECcCCCCChhHHHHHHHHH
Q 007526          443 SVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       443 ~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      ++|++|||++|.|++.|...+++.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            4455555555555555555555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.80  E-value=0.0064  Score=34.82  Aligned_cols=21  Identities=43%  Similarity=0.659  Sum_probs=8.6

Q ss_pred             CCccEEEccCCCCChHHHHHH
Q 007526          499 NTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ++|++|+|++|.|++.++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            344444444444444444433

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.33  E-value=0.012  Score=33.68  Aligned_cols=21  Identities=43%  Similarity=0.623  Sum_probs=8.4

Q ss_pred             CCcCEEECcCCCCChhHHHHH
Q 007526          443 SVITSLDLAYNPIGADGAKAL  463 (600)
Q Consensus       443 ~~L~~L~Ls~n~i~~~~~~~l  463 (600)
                      ++|++|+|++|+|+++++..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            344444444444444444433

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.80  E-value=0.072  Score=31.09  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=12.6

Q ss_pred             CCCccEEEccCC-CCChHHHHHH
Q 007526          498 NNTISILDLRAN-GLRDEGAKCL  519 (600)
Q Consensus       498 ~~~L~~L~Ls~n-~i~~~~~~~l  519 (600)
                      |++|++|+|++| .|+|.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            355666666666 4666555544

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=91.04  E-value=0.26  Score=28.64  Aligned_cols=20  Identities=30%  Similarity=0.330  Sum_probs=9.7

Q ss_pred             CCCcEEEccCC-CCChHHHHH
Q 007526          387 KSLLWINLYMN-DIGDEGAEK  406 (600)
Q Consensus       387 ~~L~~L~Ls~n-~l~~~~~~~  406 (600)
                      ++|++|+|++| .++|.|+..
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~   22 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQA   22 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHH
Confidence            44555555554 355544443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.18  E-value=0.39  Score=24.79  Aligned_cols=10  Identities=40%  Similarity=0.567  Sum_probs=3.2

Q ss_pred             ccEEEccCCC
Q 007526          501 ISILDLRANG  510 (600)
Q Consensus       501 L~~L~Ls~n~  510 (600)
                      |+.|++++|+
T Consensus         3 L~~L~l~~n~   12 (17)
T PF13504_consen    3 LRTLDLSNNR   12 (17)
T ss_dssp             -SEEEETSS-
T ss_pred             cCEEECCCCC
Confidence            3344444433

...

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=82.95  E-value=1.8  Score=45.42  Aligned_cols=38  Identities=29%  Similarity=0.294  Sum_probs=17.7

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCC
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN  228 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  228 (600)
                      .+.+..++|++|++-.  ++.+..+...-|+|+.|+|++|
T Consensus       217 ~p~i~sl~lsnNrL~~--Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYH--LDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             Ccceeeeecccchhhc--hhhhhHHHHhcchhheeecccc
Confidence            3455555555555422  2233333333455555555555

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.61  E-value=3.4  Score=43.51  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=17.8

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  397 (600)
                      +.+..++|++|++-..+  .+...-...|+|+.|+|++|
T Consensus       218 p~i~sl~lsnNrL~~Ld--~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLD--ALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             cceeeeecccchhhchh--hhhHHHHhcchhheeecccc
Confidence            34555555555543321  12233344555666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	600
2bnh_A	457	Porcine Ribonuclease Inhibitor Length = 457		3e-26
2bnh_A	457	Porcine Ribonuclease Inhibitor Length = 457		1e-24
3tsr_E	457	X-Ray Structure Of Mouse Ribonuclease Inhibitor Com		9e-26
3tsr_E	457	X-Ray Structure Of Mouse Ribonuclease Inhibitor Com		4e-23
1z7x_W	461	X-Ray Structure Of Human Ribonuclease Inhibitor Com		1e-22
1a4y_A	460	Ribonuclease Inhibitor-Angiogenin Complex Length =		1e-22
3un9_A	372	Crystal Structure Of An Immune Receptor Length = 37		8e-06
1k5d_C	386	Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl		8e-05
1yrg_A	385	The Crystal Structure Of Rna1p: A New Fold For A Gt		9e-05

>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457

Iteration: 1
 Score =  116 bits (291), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 173/374 (46%), Gaps = 8/374 (2%)
Query: 150 SKQTLNEFAKELRA---FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAA 205
           +++   +    LRA    + + +     GD G+  + + L       +++S     +T A
Sbjct: 37  TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEA 96
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAK 264
           G       L+S   L+ L+LS NP+GD G++ LC+ L+D    +E+LQL    L     +
Sbjct: 97  GCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCE 156
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXX 323
            +A +L+    L+ L ++NN I  +G   L + L +++  + +L                
Sbjct: 157 PLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 216
Query: 324 XXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
                  SLREL L  N +GD GI  L  GL S   +L  L +    I+A G   +   +
Sbjct: 217 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 276
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN 442
           +  ++L  ++L  N +GDEGA  + ++L Q    + ++ +   ++ +     ++ +L  N
Sbjct: 277 QAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQN 336
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTI 501
             +  L L+ N +G  G + L + L   G  +  L LG C++  SG   +A +L  N ++
Sbjct: 337 KHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSL 396
Query: 502 SILDLRANGLRDEG 515
             LDL  N + D G
Sbjct: 397 RELDLSNNCVGDPG 410

>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 176/404 (43%), Gaps = 7/404 (1%)
Query: 184 ESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK-CLCDIL 242
           E L   Q  E V     G+T    K     L++N +L  L L  N +GD GV   L  + 
Sbjct: 18  ELLPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQ 77
Query: 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302
                +++L L +  L + G   +   L++   LR L L++N +  +G   L E LL+  
Sbjct: 78  SPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQ 137
Query: 303 T-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
             +  L                      ++L+EL +  N IG+ G R L  GL+    +L
Sbjct: 138 CHLEKLQLEYCRLTAASCEPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQL 197
Query: 362 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG-AEKIADALKQNRTITTI 420
             L + N  ++      +   + +  SL  ++L  N +GD G AE     L     + T+
Sbjct: 198 ETLRLENCGLTPANCKDLCGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTL 257
Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLG 479
            L   +I + G   + RVL+    +  L LA N +G +GA+ L E L   G  + +L + 
Sbjct: 258 WLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVK 317
Query: 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
            C + A+  + V+ ML  N  +  L L +N L D G + L Q+       L  + L   E
Sbjct: 318 SCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCE 377
Query: 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSF 583
           + + G  ++A  L AN   ++  L+L+NN +   G V+ L  S 
Sbjct: 378 VTNSGCSSLASLLLANR--SLRELDLSNNCVGDPG-VLQLLGSL 418

>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457

Iteration: 1
 Score =  115 bits (287), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 174/368 (47%), Gaps = 7/368 (1%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
           A + + +     GD G+  + + L  N T   +++S    G+T AG     G+L+S   L
Sbjct: 53  ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 111
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           + L+L+ NP+GD G+K LC+ L D    +E+LQL   +L     + +A +L+  +  + L
Sbjct: 112 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 171
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
            L+NN +   G   L + L +++  + SL                       SL+EL L 
Sbjct: 172 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 231
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N +G+ GI AL  GL     KL  L +    I+A+G   +   ++  +SL  ++L  N+
Sbjct: 232 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 291
Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
           + DEGA  + ++ L+    + ++ +   ++ +        VL  +  +  L ++ NP+G 
Sbjct: 292 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 351
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
           +G + L + L     +   L LG C +  SG   +A++L  N ++  LDL  N +   G 
Sbjct: 352 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 411
Query: 517 KCLAQSFK 524
             L +S K
Sbjct: 412 LQLLESLK 419

>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 183/422 (43%), Gaps = 10/422 (2%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
           S+D+      D       E L   Q  E V     G+T    K     +Q+N AL  L+L
Sbjct: 3   SLDIQCEQLSD---ARWTELLPLIQQYEVVRLDDCGLTEVRCKDISSAVQANPALTELSL 59
Query: 226 SGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
             N +GD GV  +   L +    +++L L +  L + G   +  +L++ S LR L LN+N
Sbjct: 60  RTNELGDGGVGLVLQGLQNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTLRELHLNDN 119
Query: 285 MIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIG 343
            +  +G   L E L +    +  L                         +EL L  N + 
Sbjct: 120 PMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLH 179
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
           + G+R L  GL     +L  L + N  I+A     + + + +  SL  ++L  N +G+ G
Sbjct: 180 EPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAG 239
Query: 404 AEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
              +   L   +  + T+ L   +I ++G   + RVL+    +  L LA N +  +GA+ 
Sbjct: 240 IAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARL 299
Query: 463 LSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
           L E L   G  + +L +  C + A+   +   +L  + ++  L + +N L DEG + L +
Sbjct: 300 LCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCK 359
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFF 581
           +    +  L  + L   ++ + G  ++A  L AN   ++  L+L+NN +   G V+ L  
Sbjct: 360 ALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANR--SLRELDLSNNCMGGPG-VLQLLE 416
Query: 582 SF 583
           S 
Sbjct: 417 SL 418

>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed With Ribonuclease I Length = 461

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
             S+D+      D      AE L   Q  + V     G+T A  K     L+ N AL  L
Sbjct: 5   IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
           NL  N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L+
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 341
           +N++  +G   L E LL+    +  L                         +EL +  N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           I + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            G AE     L  +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
           + L E L   G  + +L +  C   A+     + +L  N  +  L +  N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
            Q        L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414

>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex Length = 460

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 173/415 (41%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
             S+D+      D      AE L   Q  + V     G+T A  K     L+ N AL  L
Sbjct: 4   IQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
           NL  N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNS 341
           +N++  +G   L E LL+    +  L                         +EL +  N 
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           I + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            G AE     L  +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
           + L E L   G  + +L +  C   A+     + +L  N  +  L +  N L D G + L
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
            Q        L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 413

>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor Length = 372

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 69/134 (51%)
Query: 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
           R+L L  NS+G E  + L   L   + ++  L + NN ++A G   + E +    S+  +
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
           +L    +GDEG E +A  L +NR +  +++  N      A A+AR  +++  +  L L +
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 453 NPIGADGAKALSEV 466
           N + ++G + L ++
Sbjct: 249 NELSSEGRQVLRDL 262

>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 386

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 381
           S++E+ L GN+IG E  R L   ++S+K     L+I   S   + +    + E       
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 88
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
            +  C  L  + L  N  G    E + D L ++  +  + L  N +  +  + IAR L++
Sbjct: 89  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148
Query: 442 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 491
            +V         + S+    N +     K  ++  + H  ++T+K+    I   G E  +
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
            + L Y   + +LDL+ N     G+  LA + K     L  + L    +   GA A+  A
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 267
Query: 552 LKANEDVAVTSLNLANN 568
               E++ + +L L  N
Sbjct: 268 FSKLENIGLQTLRLQYN 284

>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase- Activating Protein Length = 385

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 24/257 (9%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS--ISAKGAFHVAE------- 381
           S++E+ L GN+IG E  R L   ++S+K     L+I   S   + +    + E       
Sbjct: 32  SVKEIVLSGNTIGTEAARWLSENIASKKD----LEIAEFSDIFTGRVKDEIPEALRLLLQ 87
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
            +  C  L  + L  N  G    E + D L ++  +  + L  N +  +  + IAR L++
Sbjct: 88  ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 147
Query: 442 NSV---------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE-FV 491
            +V         + S+    N +     K  ++  + H  ++T+K+    I   G E  +
Sbjct: 148 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 207
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
            + L Y   + +LDL+ N     G+  LA + K     L  + L    +   GA A+  A
Sbjct: 208 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN-LRELGLNDCLLSARGAAAVVDA 266
Query: 552 LKANEDVAVTSLNLANN 568
               E++ + +L L  N
Sbjct: 267 FSKLENIGLQTLRLQYN 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	600
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-123
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-106
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-90
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-60
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-70
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-40
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-32
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-50
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-73
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-32
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-30
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	6e-29
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	2e-23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-29
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-26
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	6e-24
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	2e-22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-19
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-20
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-13
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-20
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-19
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-14
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-04

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  370 bits (953), Expect = e-123
 Identities = 108/413 (26%), Positives = 177/413 (42%), Gaps = 9/413 (2%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
           S+D+      D      AE L   Q  + V     G+T A  K     L+ N AL  LNL
Sbjct: 7   SLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 226 SGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
             N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L++N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 285 MIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
           ++  +G   L E LL+    +  L L      A     LA  L      +EL +  N I 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
           + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243

Query: 404 AEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
             ++   L   +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA+ 
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303

Query: 463 LSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
           L E L      + +L +  C   A+     + +L  N  +  L +  N L D G + L Q
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363

Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
                   L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  326 bits (839), Expect = e-106
 Identities = 96/395 (24%), Positives = 173/395 (43%), Gaps = 5/395 (1%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224
            +++     GD G+  + + L       +++S     +T AG       L++   L+ L+
Sbjct: 60  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 225 LSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN 283
           LS N +GD G++ LC+ L+D    +E+LQL    L     + +A +L+     + L ++N
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 284 NMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342
           N I+ +G   L + L ++   + +L L      +     L   +    SLREL L  N +
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 343 GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402
           GD G+  L  GL     +L  L I    I+AKG   +   ++  +SL  ++L  N++GDE
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461
           GA  + + L +    + ++ +   +  +   S  + VL  N  +  L ++ N +   G +
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359

Query: 462 ALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA 520
            L + L      +  L L  C +  S    +A  L  N+++  LDL  N L D G   L 
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419

Query: 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 555
           +S +     L  + L      ++    +    K  
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  296 bits (760), Expect = 2e-94
 Identities = 80/358 (22%), Positives = 144/358 (40%), Gaps = 8/358 (2%)

Query: 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
           ++ +++L++    + D     L  +L      + ++L    L +   K I+  L+ N  L
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 277 RVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
             L L +N +   G   + + L   +  I+ L L        G   L+  L    +L+EL
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
           HL  N +GD G++ L  GL   + +L  L +   S+SA     +A  ++       + + 
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 396 MNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
            NDI + G   +   LK +   +  + L    + S     +  ++   + +  L L  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 455 IGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
           +G  G   L   +L     + TL +  C I A G   +  +LR   ++  L L  N L D
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571
           EGA+ L ++       L S+ +             +  L  N    +  L ++NN L 
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR--FLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  286 bits (734), Expect = 2e-90
 Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 5/345 (1%)

Query: 165 SSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
             + +S    GD GL  L E L   Q   E++      ++AA  +    VL++    K L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 224 NLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
            +S N I + GV+ LC  L D+   +E L+L S  +  +  + +  ++ + + LR L L 
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
           +N +   G   L   LL  +S +R+L +      A G   L + L   +SL+EL L GN 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
           +GDEG R L   L     +L  L + + S +A    H +  +   + LL + +  N + D
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355

Query: 402 EGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            G  ++   L Q    +  + L   ++     S++A  L  N  +  LDL+ N +G  G 
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415

Query: 461 KALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
             L E ++     +  L L          + +  + +   ++ ++
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  205 bits (525), Expect = 4e-60
 Identities = 47/248 (18%), Positives = 99/248 (39%), Gaps = 8/248 (3%)

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
           +  ++ L +    + D     L+  L     +  V+ + +  ++      ++  ++   +
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQ----QCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 389 LLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
           L  +NL  N++GD G   +   L+  +  I  + L    +   G   ++  L+    +  
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 448 LDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
           L L+ N +G  G + L E L      +  L+L +C + A+  E +A +LR       L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566
             N + + G + L Q  K     L ++ L    +  D    +   + +    ++  L L 
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA--SLRELALG 235

Query: 567 NNFLTKFG 574
           +N L   G
Sbjct: 236 SNKLGDVG 243

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  175 bits (446), Expect = 8e-49
 Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 3/229 (1%)

Query: 168 DMSGRNFGDEGLFFLAESLGY-NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226
            +     GD G+  L   L + +     +     GITA G      VL++  +LK L+L+
Sbjct: 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292

Query: 227 GNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285
           GN +GDEG + LC+ L++    +E L + S           + +L  N  L  L+++NN 
Sbjct: 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352

Query: 286 IDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344
           ++ +G   L + L +  S +R L L          ++LA  L  N SLREL L  N +GD
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412

Query: 345 EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
            GI  L+  +      L  L + +   S +    +    K+  SL  I+
Sbjct: 413 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  293 bits (752), Expect = 3e-94
 Identities = 70/371 (18%), Positives = 134/371 (36%), Gaps = 31/371 (8%)

Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
           +  +++  +L  + I  E  K +  +L+++  V+ + LS   +  E A+ ++E + +   
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 276 LRVLELNNNMID------YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
           L + E ++                L +ALL+   + ++ L+ N  G      L   L  +
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
             L  L+LH N +G +    +   L                        V +  KN   L
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQE--------------------LAVNKKAKNAPPL 161

Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-AIARVLKDNSVITSL 448
             I    N + +   ++ A   + +R + T+ +  N I  +G    +   L     +  L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221

Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY--NNTISILDL 506
           DL  N     G+ AL+  LK   N+  L L  C + A GA  V D      N  +  L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281

Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF--AIAQALKANEDVAVTSLN 564
           + N +  +  + L          L  ++L  N   ++      I +         +  L+
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341

Query: 565 LANNFLTKFGQ 575
                  +  +
Sbjct: 342 DMEELTDEEEE 352

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  245 bits (627), Expect = 8e-76
 Identities = 65/338 (19%), Positives = 124/338 (36%), Gaps = 22/338 (6%)

Query: 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221
            +     +       E    +   L  + + +E+  + N I     +     + S   L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 222 TLNLSGNPIGD------EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
               S    G       E ++ L   L+    +  ++LS         + + + L  ++ 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 276 LRVLELNNNMIDYSGFTSLAEALLE---------NSTIRSLHLNGNYGGALGANALAKGL 326
           L  L L+NN +       +A AL E            +RS+    N          AK  
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 327 EGNKSLRELHLHGNSIGDEGI-RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
           + ++ L  + +  N I  EGI   L+ GL+  + +L VLD+ +N+ +  G+  +A  +K+
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 386 CKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVLKDN- 442
             +L  + L    +   GA  + DA  +  N  + T+ L  N I       +  V+ +  
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 443 SVITSLDLAYNPIGADGA--KALSEVLKFHGNINTLKL 478
             +  L+L  N    +      + EV    G     +L
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  231 bits (592), Expect = 1e-70
 Identities = 60/292 (20%), Positives = 115/292 (39%), Gaps = 18/292 (6%)

Query: 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK 358
           +   +I    L  +        ++   L  + S++E+ L GN+IG E  R L   ++S+K
Sbjct: 1   MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60

Query: 359 GKLAVLDIGNNSIS------AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
             L + +  +           +    + + +  C  L  + L  N  G    E + D L 
Sbjct: 61  -DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVL---------KDNSVITSLDLAYNPIGADGAKAL 463
           ++  +  + L  N +  +  + IAR L         K+   + S+    N +     K  
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 464 SEVLKFHGNINTLKLGWCQIGASGAE-FVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522
           ++  + H  ++T+K+    I   G E  + + L Y   + +LDL+ N     G+  LA +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239

Query: 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
            K     L  + L    +   GA A+  A    E++ + +L L  N +    
Sbjct: 240 LK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  150 bits (381), Expect = 2e-40
 Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 26/277 (9%)

Query: 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFD 211
           + L +F  +      + +     G +    +A +L      ++                 
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK----------------- 154

Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK-AIAELL 270
              ++   L+++    N + +  +K        +  +  +++    +R EG +  + E L
Sbjct: 155 --AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE--G 328
                L+VL+L +N   + G ++LA AL     +R L LN     A GA A+        
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNC 386
           N  L+ L L  N I  + +R L + +  +   L  L++  N  S +      + E     
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332

Query: 387 K--SLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
               L  ++       +E  ++  +A  Q+    T +
Sbjct: 333 GRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSE 369

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  127 bits (321), Expect = 3e-32
 Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 6/202 (2%)

Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIK- 208
            +  +N+ AK      S+        +  +   A++   ++    V    NGI   GI+ 
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
                L     LK L+L  N     G   L   L     +  L L+   L   GA A+ +
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 269 LLKN--NSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGA--NALA 323
                 N  L+ L L  N I+     +L   + E    +  L LNGN         + + 
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326

Query: 324 KGLEGNKSLRELHLHGNSIGDE 345
           +            L       +
Sbjct: 327 EVFSTRGRGELDELDDMEELTD 348

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  265 bits (680), Expect = 6e-84
 Identities = 56/354 (15%), Positives = 129/354 (36%), Gaps = 10/354 (2%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDL 258
                 G    +        + +L+LS N +       L     +  A V  L LS   L
Sbjct: 4   KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63

Query: 259 RDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGA 316
             + +  + ++L    + +  L L+ N + Y     L + L     TI  L L  N   +
Sbjct: 64  GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 317 LGANALAKGLEG-NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375
             ++   +       S+  L+L GN +G +    L+  L++    +  L++  N++++K 
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183

Query: 376 AFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGAS 433
              +A+++ +   S+  ++L  N +G +   ++A         + +++L  N +H     
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243

Query: 434 AIARVLKDNSVITSLDLAYNP---IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490
            +  +      + ++ L Y+    +  +  KAL         I  +     +I  S +  
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303

Query: 491 VADMLR-YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
           +++++R  +    +  L    L              + + L         + + 
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  248 bits (636), Expect = 2e-77
 Identities = 50/355 (14%), Positives = 122/355 (34%), Gaps = 10/355 (2%)

Query: 225 LSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNN 283
           ++       G   + +      GV  L LS  +L       + +      + +  L L+ 
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 284 NMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEG-NKSLRELHLHGNS 341
           N + +     L + L    + + SL+L+GN+     ++ L K L     ++  L L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIG 400
              +         S+    +  L++  N +  K +  + + +     ++  +NL  N++ 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 401 DEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGAD 458
            +   ++A  L     ++T++DL  N +  K  + +A +     + + SL+L  N +   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 459 GAKALSEVLKFHGNINTLKLGW---CQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515
             + L  +     ++ T+ L +     +     + +         I ++D     +    
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300

Query: 516 AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
           +  ++   + ++       L    +                D  +         L
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD-ELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  245 bits (628), Expect = 3e-76
 Identities = 64/351 (18%), Positives = 127/351 (36%), Gaps = 11/351 (3%)

Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIA-LKTLNLSGNPIGDE 233
              G   + E          +  + N + +           +  A + +LNLSGN +G +
Sbjct: 7   LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK 66

Query: 234 GVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGF 291
               L  IL    A V  L LS   L  + +  + + L      + VL+L  N       
Sbjct: 67  NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126

Query: 292 TSLAEALL-ENSTIRSLHLNGNYGGALGANALAKGLEG-NKSLRELHLHGNSIGDEGIRA 349
           +   +A     ++I SL+L GN  G   ++ L + L     ++  L+L GN++  +    
Sbjct: 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186

Query: 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIA 408
           L   L+S    +  LD+  N +  K    +A    +    ++ +NL +N +     E + 
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246

Query: 409 DALKQNRTITTIDLGGN---NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465
                 + + T+ L  +   N+  +   A+     +   I  +D     I    +  +S 
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306

Query: 466 VLK-FHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRANGLRDE 514
           +++   G  +   L    +  A   +   + L   + +         L + 
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  226 bits (578), Expect = 7e-69
 Identities = 51/303 (16%), Positives = 123/303 (40%), Gaps = 12/303 (3%)

Query: 281 LNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK-SLRELHLHG 339
           +N  +  + G   + E       + SL L+ N   ++    L +       S+  L+L G
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMND 398
           NS+G +    L+  L++    +  L++  N +S K +  + + +     ++  ++L  ND
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIG 456
              + + +   A      +IT+++L GN++  K +  + ++L    + + SL+L  N + 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180

Query: 457 ADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNN-TISILDLRANGLRDE 514
           +     L++ L     ++ +L L    +G      +A +       +  L+L  N L   
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRD---DGAFAIAQALKANEDVAVTSLNLANNFLT 571
             + L        + L ++ L ++ +++   +   A+  A    +   +  ++     + 
Sbjct: 241 SLENLKLLKD-SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK--IILVDKNGKEIH 297

Query: 572 KFG 574
              
Sbjct: 298 PSH 300

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  175 bits (446), Expect = 8e-50
 Identities = 43/298 (14%), Positives = 100/298 (33%), Gaps = 33/298 (11%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQS-NIALKTL 223
           S+++SG     +    L ++L         +    N  ++     F     +   ++ +L
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 224 NLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLEL 281
           NL GN +G +    L  IL    A V  L L   +L  +    +A+ L    + +  L+L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203

Query: 282 NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340
           + N++    +  LA       + + SL+L  N         L    +  K L+ ++L  +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263

Query: 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400
            + +                          +S +    +     N + ++ ++    +I 
Sbjct: 264 IVKN--------------------------MSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 401 DEGAEKIADALKQ-NRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYNPIG 456
              +  I++ +++ +       L    +  ++        L     +        P+ 
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score =  125 bits (317), Expect = 6e-32
 Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 7/220 (3%)

Query: 166 SVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTL 223
           S+++ G + G +    L + L         ++   N + +         L S   ++ +L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201

Query: 224 NLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
           +LS N +G +    L  I       V  L L    L     + +  L  +   L+ + L+
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 283 NNMIDYSG---FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL-EGNKSLRELHLH 338
            +++         +L  A      I  +  NG       +  ++  + E +       L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378
              +             +   +L         +      H
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHH 361

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  238 bits (610), Expect = 2e-73
 Identities = 54/309 (17%), Positives = 110/309 (35%), Gaps = 19/309 (6%)

Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGALGANAL 322
           +      +  S LR L L    +     T +A  L      +  ++L        G   L
Sbjct: 62  QNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL 121

Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
                     R+L L  NS+G E  + L   L   + ++  L + NN ++A G   + E 
Sbjct: 122 LPVF---LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178

Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
           +    S+  ++L    +GDEG E +A  L +NR +  +++  N      A A+AR  +++
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238

Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW---CQIGASGAEFVADMLRYNN 499
             +  L L +N + ++G + L ++         + +       +    +  ++++ R  N
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298

Query: 500 -----------TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548
                       + + DL  +          AQ  + V   + ++               
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR-VEGEVRALLEQLGSSGSPSGSWS 357

Query: 549 AQALKANED 557
               +    
Sbjct: 358 HPQFEKGAG 366

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  221 bits (565), Expect = 8e-67
 Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 19/310 (6%)

Query: 155 NEFAKE-LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDG 212
             F+ E L +   ++++G          +A  LG  + A +EV+ A+  +  AG++    
Sbjct: 64  QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-- 121

Query: 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLK 271
            L   +  + L L  N +G E  K L D+L  D   +  L+LS+  L   G   + E L 
Sbjct: 122 -LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
            N+ +  L L +  +   G   LA  L  N  ++ L++  N  G   A ALA+    + S
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240

Query: 332 LRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKS- 388
           L  LHL+ N +  EG + L     + +G  ++ V      ++S   +  ++E  +N  S 
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300

Query: 389 ----------LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438
                     LL  +L  +        + A  L+    +  +     +  S   S     
Sbjct: 301 DRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQ 360

Query: 439 LKDNSVITSL 448
            +  +     
Sbjct: 361 FEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  196 bits (499), Expect = 3e-57
 Identities = 58/285 (20%), Positives = 104/285 (36%), Gaps = 38/285 (13%)

Query: 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353
             + L  +  +  L  +                E   SLR+L+L G  +       + + 
Sbjct: 42  GRQVLPPSELLDHLFFH------YEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAV 95

Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
           L S +  L  +++ +  +   G   +       + L    L +N +G E  + + D L  
Sbjct: 96  LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLH 152

Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 473
           +                              IT+L L+ NP+ A G   L E L  + ++
Sbjct: 153 D---------------------------QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185

Query: 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
             L L    +G  G E +A  L  N  +  L++  NG  D  A  LA++ +  + +L  +
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE-HPSLELL 244

Query: 534 DLAFNEIRDDGAFAIAQALKANEDVA-VTSLNLANNFLTKFGQVI 577
            L FNE+  +G   +     A E  A V         ++++  VI
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI 289

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score =  128 bits (324), Expect = 9e-33
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 14/183 (7%)

Query: 168 DMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227
            +     GDEGL  LA  L  N+  +E++ A NG       A     + + +L+ L+L  
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 228 NPIGDEGVKCLCDILVDNAGVERLQLSSVD---LRDEGAKAIAELLKNNSI--------- 275
           N +  EG + L D+     G  R+ +S  +   + +  +  ++E+ +N +          
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308

Query: 276 --LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
             L + +L ++          A+ L     +R+L       G+   +      E      
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHH 368

Query: 334 ELH 336
             H
Sbjct: 369 HHH 371

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  141 bits (358), Expect = 2e-39
 Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 387 KSLLWINLYMNDIGD-EGAEKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSV 444
           K   +  +   +    +  E +      +  +  ++L    NI      A A  LK N+ 
Sbjct: 7   KPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY 66

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
           +    +         A AL+E+LK +  + +L +    I  SG   + + L+ N ++  L
Sbjct: 67  VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126

Query: 505 DLR--ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557
            +   +  L +     +A   +  N  L      F +         + A+  N D
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQ--GPRLRASNAMMNNND 178

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  136 bits (345), Expect = 1e-37
 Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%)

Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAE 268
            + V++        +   N    +  + L  I  ++  +E + L+++ ++     KA AE
Sbjct: 2   LNSVIKPTKYKPVPDEEPNS--TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE 59

Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
            LK N+ ++   +     +     +LAE L  N+T++SL++  N+    G  AL + L+ 
Sbjct: 60  ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS 119

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
           N SL EL +   S                             +       +A  ++   +
Sbjct: 120 NTSLIELRIDNQS---------------------------QPLGNNVEMEIANMLEKNTT 152

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTIT 418
           LL    +    G       ++A+  N  + 
Sbjct: 153 LLKFGYHFTQQGPRLR--ASNAMMNNNDLV 180

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  135 bits (343), Expect = 3e-37
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 3/144 (2%)

Query: 380 AEYIKNCKSLLWINLY-MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438
                N   L  +NL  + +I     +  A+ALK N  +    + G   +   A A+A +
Sbjct: 29  KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88

Query: 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC--QIGASGAEFVADMLR 496
           LK N+ + SL++  N I   G  AL E L+ + ++  L++      +G +    +A+ML 
Sbjct: 89  LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 497 YNNTISILDLRANGLRDEGAKCLA 520
            N T+                  A
Sbjct: 149 KNTTLLKFGYHFTQQGPRLRASNA 172

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  128 bits (323), Expect = 1e-34
 Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 5/175 (2%)

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKS 388
           K  +   +         +   +  + +    L  +++ N  +I        AE +K    
Sbjct: 7   KPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY 66

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
           +   ++      D  A  +A+ LK N T+ ++++  N I   G  A+   L+ N+ +  L
Sbjct: 67  VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126

Query: 449 DLA--YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501
            +     P+G +    ++ +L+ +  +      + Q G       ++ +  NN +
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 179

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  123 bits (310), Expect = 1e-32
 Identities = 25/143 (17%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 429 SKGASAIARVLKDNSVITSLDLA-YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487
           +     + R+  ++  +  ++L     I     KA +E LK +  +    +   +     
Sbjct: 22  TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV 81

Query: 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN--EIRDDGA 545
           A  +A+ML+ NNT+  L++ +N +   G   L ++ +  N +L  + +      + ++  
Sbjct: 82  AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVE 140

Query: 546 FAIAQALKANEDVAVTSLNLANN 568
             IA  L+ N    +        
Sbjct: 141 MEIANMLEKNT--TLLKFGYHFT 161

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  116 bits (293), Expect = 2e-30
 Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 31/168 (18%)

Query: 182 LAESLGYNQTAEEVSFA-ANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240
           L      +   EEV+      I    +KA    L++N  +K  ++ G             
Sbjct: 28  LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--------- 78

Query: 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300
                              D  A A+AE+LK N+ L+ L + +N I  SG  +L EAL  
Sbjct: 79  -------------------DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS 119

Query: 301 NSTIRSLHL--NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346
           N+++  L +       G      +A  LE N +L +   H    G   
Sbjct: 120 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score =  112 bits (282), Expect = 6e-29
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 5/160 (3%)

Query: 151 KQTLNEFAKELRAFSSVDMSGRN-FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKA 209
           ++TL            V+++         L   AE+L  N   ++ S            A
Sbjct: 25  EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA 84

Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLS--SVDLRDEGAKAIA 267
              +L+ N  LK+LN+  N I   G+  L + L  N  +  L++   S  L +     IA
Sbjct: 85  LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144

Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
            +L+ N+ L     +            + A++ N+ +   
Sbjct: 145 NMLEKNTTLLKFGYHFTQQG--PRLRASNAMMNNNDLVRK 182

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 96.6 bits (241), Expect = 2e-23
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 8/132 (6%)

Query: 442 NSVITS---LDLAYNPIGA-DGAKALSEVLKFHGNINTLKLG-WCQIGASGAEFVADMLR 496
           NSVI       +      + D  + L  +     ++  + L     I     +  A+ L+
Sbjct: 3   NSVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALK 62

Query: 497 YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 556
            N  +    +      D  A  LA+  KV N  L S+++  N I   G  A+ +AL++N 
Sbjct: 63  TNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNT 121

Query: 557 DVAVTSLNLANN 568
             ++  L + N 
Sbjct: 122 --SLIELRIDNQ 131

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)

Query: 487 GAEFVADMLRYNNTISILDL-RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545
             E +  +   +  +  ++L     +     K  A++ K  N  +    +      D  A
Sbjct: 24  VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVA 82

Query: 546 FAIAQALKANEDVAVTSLNLANNFLTKFG 574
           FA+A+ LK N    + SLN+ +NF++  G
Sbjct: 83  FALAEMLKVNN--TLKSLNVESNFISGSG 109

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score =  118 bits (298), Expect = 5e-31
 Identities = 31/219 (14%), Positives = 79/219 (36%), Gaps = 31/219 (14%)

Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIA 267
            F+G++QS +     +   N    E   C+  +  D+  ++ + ++++  +  E  +++ 
Sbjct: 6   TFNGIMQSYVPRIVPDEPDNDTDVE--SCINRLREDDTDLKEVNINNMKRVSKERIRSLI 63

Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
           E   N+  +    L N  I  S    L E +  + ++R L++  N+        L +   
Sbjct: 64  EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123

Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
             +S+ E                                  + +  +    +   I+  +
Sbjct: 124 VTQSIVEFKADNQRQ--------------------------SVLGNQVEMDMMMAIEENE 157

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
           SLL + +    +      ++++AL++N     +   G +
Sbjct: 158 SLLRVGISFASME--ARHRVSEALERNYERVRLRRLGKD 194

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score =  115 bits (289), Expect = 1e-29
 Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 4/140 (2%)

Query: 208 KAFDGVLQSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
              + + + +  LK +N++    +  E ++ L +   ++  +E+  L++  + D  A+ +
Sbjct: 31  SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 90

Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG---ANALA 323
            EL++ +  LRVL + +N +       L  + L   +I     +      LG      + 
Sbjct: 91  IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150

Query: 324 KGLEGNKSLRELHLHGNSIG 343
             +E N+SL  + +   S+ 
Sbjct: 151 MAIEENESLLRVGISFASME 170

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score =  107 bits (269), Expect = 5e-27
 Identities = 19/158 (12%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 404 AEKIADALKQNRTITTIDL-GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
              I    + +  +  +++     +  +   ++     ++  I    LA   I    A+ 
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89

Query: 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL---RANGLRDEGAKCL 519
           L E+++   ++  L +    +       +        +I        R + L ++    +
Sbjct: 90  LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149

Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557
             + +  NE+L  + ++F  +  +    +++AL+ N +
Sbjct: 150 MMAIE-ENESLLRVGISFASM--EARHRVSEALERNYE 184

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score =  106 bits (265), Expect = 2e-26
 Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 35/185 (18%)

Query: 321 ALAKGLEGNKSLRELHL-HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
            + +  E +  L+E+++ +   +  E IR+L                             
Sbjct: 32  CINRLREDDTDLKEVNINNMKRVSKERIRSL----------------------------- 62

Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439
            E   N K +   +L    I D  A  + + ++ + ++  +++  N +  +  + + R  
Sbjct: 63  IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122

Query: 440 KDNSVITSLDLA---YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496
                I          + +G      +   ++ + ++  + + +  + A     V++ L 
Sbjct: 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR--VSEALE 180

Query: 497 YNNTI 501
            N   
Sbjct: 181 RNYER 185

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 98.8 bits (246), Expect = 6e-24
 Identities = 21/164 (12%), Positives = 61/164 (37%), Gaps = 7/164 (4%)

Query: 182 LAESLGYNQTAEEVSF-AANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240
           +      +   +EV+      ++   I++      ++  ++  +L+   I D   + L +
Sbjct: 33  INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92

Query: 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN---NMIDYSGFTSLAEA 297
           ++  +  +  L + S  L  E    +         +   + +N   +++       +  A
Sbjct: 93  LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA 152

Query: 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSL-RELHLHGN 340
           + EN ++  + ++     A   + +++ LE N    R   L  +
Sbjct: 153 IEENESLLRVGISFASMEA--RHRVSEALERNYERVRLRRLGKD 194

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 94.5 bits (235), Expect = 1e-22
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 172 RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231
           +    E +  L E+   ++  E+ S A   I+ +  +    +++++ +L+ LN+  N + 
Sbjct: 52  KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111

Query: 232 DEGVKCLCDILVDNAGVERLQLS---SVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY 288
            E +  L    +    +   +        L ++    +   ++ N  L  L +  +    
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL--LRVGISFASM 169

Query: 289 SGFTSLAEALLENSTI-RSLHLNGN 312
                ++EAL  N    R   L  +
Sbjct: 170 EARHRVSEALERNYERVRLRRLGKD 194

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 20/139 (14%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 434 AIARVLKDNSVITSLDL-AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492
            I R+ +D++ +  +++     +  +  ++L E      +I    L    I  S A  + 
Sbjct: 32  CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91

Query: 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA---FNEIRDDGAFAIA 549
           +++  + ++ +L++ +N L  E    L +S  V  +++          + + +     + 
Sbjct: 92  ELIETSPSLRVLNVESNFLTPELLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMM 150

Query: 550 QALKANEDVAVTSLNLANN 568
            A++ NE  ++  + ++  
Sbjct: 151 MAIEENE--SLLRVGISFA 167

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL-- 223
              ++     D     L E +  + +   ++  +N +T   +           ++     
Sbjct: 74  KFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133

Query: 224 -NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLEL 281
            N   + +G++    +   + +N  + R+ +S      E    ++E L+ N   +R+  L
Sbjct: 134 DNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS--MEARHRVSEALERNYERVRLRRL 191

Query: 282 NNNM 285
             + 
Sbjct: 192 GKDP 195

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 61.4 bits (149), Expect = 5e-11
 Identities = 13/88 (14%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 488 AEFVADMLRYNNTISILDL-RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546
              +  +   +  +  +++     +  E  + L ++    ++ +    LA   I D  A 
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEAR 88

Query: 547 AIAQALKANEDVAVTSLNLANNFLTKFG 574
            + + ++ +   ++  LN+ +NFLT   
Sbjct: 89  GLIELIETSP--SLRVLNVESNFLTPEL 114

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  106 bits (267), Expect = 2e-24
 Identities = 69/452 (15%), Positives = 138/452 (30%), Gaps = 71/452 (15%)

Query: 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGV 213
           + E +  LR   SV        D  L  LA++   +    ++    +G T  G+ +   +
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC-SGFTTDGLLS---I 159

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
           +     +KTL +  +   ++  K L ++   N  +E L     +      K +  + +N 
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 274 SILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL--------------- 317
             L  +++ +  +++  GF   A  L E          G     +               
Sbjct: 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY 279

Query: 318 -GANALAKGLEGNKSLRELHLHG------------------------NSIGDEGIRALMS 352
            G N +         +R+L L                          N IGD G+  L  
Sbjct: 280 MGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 353 GLS-------SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405
                      R      ++     +S +G   +A+    C+ L ++ +Y++DI +E  E
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---GCQELEYMAVYVSDITNESLE 396

Query: 406 KIADALKQNRTITTIDLGG-----NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
            I   LK       + L       +     G  ++    K    +          G    
Sbjct: 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK---LRRFAFYLRQ-GGLTD 452

Query: 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA 520
             LS + ++  N+  + LG+      G    +        +  L++R     +       
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP---NLQKLEMRGCCFSERAIAAAV 509

Query: 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552
                   +L  + +        G   +  A 
Sbjct: 510 TKLP----SLRYLWVQGYRASMTGQDLMQMAR 537

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 90.4 bits (224), Expect = 3e-19
 Identities = 46/359 (12%), Positives = 110/359 (30%), Gaps = 48/359 (13%)

Query: 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLK 271
           +  +   LK+++     + D  +  L     D+  +E L+L        +G  +I    +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD--LETLKLDKCSGFTTDGLLSIVTHCR 164

Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
               ++ L +  +         L E    N+++  L+        +    L       +S
Sbjct: 165 K---IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221

Query: 332 LRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           L  + +     +   G     + L     +     +  +    +   ++    K C+  L
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLE----EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
                   +G      +     Q   I  +DL    + ++    + +   +   +  L+ 
Sbjct: 278 S------YMGPNEMPILFPFAAQ---IRKLDLLYALLETEDHCTLIQKCPN---LEVLET 325

Query: 451 AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510
               IG  G + L++  K    +  L++                         ++     
Sbjct: 326 RNV-IGDRGLEVLAQYCK---QLKRLRIERG-----------------ADEQGMEDEEGL 364

Query: 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 569
           +   G   LAQ  +     L  + +  ++I ++   +I   LK   D  +  L+     
Sbjct: 365 VSQRGLIALAQGCQ----ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 74.2 bits (182), Expect = 5e-14
 Identities = 36/256 (14%), Positives = 84/256 (32%), Gaps = 35/256 (13%)

Query: 175 GDEGLFFLAES--------LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226
           GD GL  LA+         +      + +      ++  G+ A   + Q    L+ + + 
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA---LAQGCQELEYMAVY 386

Query: 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVD--------LRDEGAKAIAELLKNNSILRV 278
            + I +E ++ +   L     +   +L  +D          D G +++    K       
Sbjct: 387 VSDITNESLESIGTYL---KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443

Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
                 + D  G + + +       +R + L        G    ++G     +L++L + 
Sbjct: 444 YLRQGGLTD-LGLSYIGQYS---PNVRWMLLGYVGESDEGLMEFSRGC---PNLQKLEMR 496

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL-YMN 397
           G    +  I A ++ L      L  L +     S  G   +    +   ++  I    + 
Sbjct: 497 GCCFSERAIAAAVTKLP----SLRYLWVQGYRASMTGQDLMQMA-RPYWNIELIPSRRVP 551

Query: 398 DIGDEGAEKIADALKQ 413
           ++  +G  +  +    
Sbjct: 552 EVNQQGEIREMEHPAH 567

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 70.7 bits (173), Expect = 5e-13
 Identities = 37/321 (11%), Positives = 90/321 (28%), Gaps = 41/321 (12%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
           ++      V +          L +    LR L+L        G    A            
Sbjct: 47  IDSETREHVTMALCYTATPDRLSRRFPNLRSLKL-------KGKPRAA----------MF 89

Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI- 366
           +L     G      + +     + L+ +H     + D  +  L     +R   L  L + 
Sbjct: 90  NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL---AKARADDLETLKLD 146

Query: 367 GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
             +  +  G   +     +C+ +  + +  +   ++  + + +  + N ++  ++     
Sbjct: 147 KCSGFTTDGLLSIV---THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203

Query: 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486
                   +  + ++   + S+ +    I            K   N+     G       
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVG-----FFKAAANLEEFCGGSLNED-- 256

Query: 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546
               +    +Y N +    L   GL   G   +   F      +  +DL +  +  +   
Sbjct: 257 ----IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYALLETEDHC 311

Query: 547 AIAQALKANEDVAVTSLNLAN 567
            + Q         +  L   N
Sbjct: 312 TLIQKCP-----NLEVLETRN 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 92.7 bits (229), Expect = 1e-20
 Identities = 23/201 (11%), Positives = 64/201 (31%), Gaps = 10/201 (4%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
              ++     I +     L+  L     + +L + G    ++G             L+ L
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN-------LKSL 198

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN--CKSLLWIN 393
            +    + D  +  ++        KL +     +                    +L W+ 
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258

Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
           +   +  +   E   ++      + T+D+    +  +GA  +   +     +  +++ YN
Sbjct: 259 IVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 454 PIGADGAKALSEVLKFHGNIN 474
            +  +  K L + L    +++
Sbjct: 318 YLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 88.5 bits (218), Expect = 3e-19
 Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 17/209 (8%)

Query: 266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
           ++ +L    +L  L++           +L+        ++SL +            +   
Sbjct: 164 LSPVLDAMPLLNNLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 326 LEGNKSLRELHLHG---NSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAE 381
                +L +L L+    +   D  +       S  R   L  L I +            E
Sbjct: 217 D--LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274

Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
                  L  +++    + DEGA  + D + + + +  I++  N +  +    + + L  
Sbjct: 275 -SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333

Query: 442 NSVITSLDLAYNPIGADGAKALSEVLKFH 470
                 +  +           ++E+   H
Sbjct: 334 K---IDVSDSQEYDDDYSYPMITELEHHH 359

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 85.0 bits (209), Expect = 6e-18
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 8/146 (5%)

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQL---SSVDLRDEGAKAIAELL 270
            +    LK+L +    + D  V+ +    + N  +E+L L         D        L 
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPN--LEKLVLYVGVEDYGFDGDMNVFRPLF 246

Query: 271 KNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
             +    L+ L + +            E+ +    + ++ ++       GA  L   ++ 
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDK 305

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGL 354
            K L+ +++  N + DE  + L   L
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSL 331

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 70.4 bits (171), Expect = 3e-13
 Identities = 29/207 (14%), Positives = 64/207 (30%), Gaps = 16/207 (7%)

Query: 357 RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT 416
                  +D     IS      ++  +     L       N++  +G   ++   K    
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL-------NNLKIKGTNNLSIGKKPRPN 194

Query: 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY---NPIGADGAKALSEVLKFHG-- 471
           + ++++    +       I      N  +  L L     +            +       
Sbjct: 195 LKSLEIISGGLPDSVVEDILGSDLPN--LEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531
           N+  L +   +      E   +       +  +D+ A  L DEGA+ L        + L 
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDK-IKHLK 310

Query: 532 SIDLAFNEIRDDGAFAIAQALKANEDV 558
            I++ +N + D+    + ++L    DV
Sbjct: 311 FINMKYNYLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.4 bits (140), Expect = 2e-09
 Identities = 20/152 (13%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC--- 481
           NN+  KG + ++   K    + SL++    +     + +        N+  L L      
Sbjct: 175 NNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP--NLEKLVLYVGVED 232

Query: 482 QIGASGAEFVADMLRYNN--TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
                       +   +    +  L +     ++   +   +S   +   L ++D++   
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISAGV 290

Query: 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571
           + D+GA  +   +   +   +  +N+  N+L+
Sbjct: 291 LTDEGARLLLDHVDKIK--HLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 4/112 (3%)

Query: 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN 217
                    + +      +  +    ES       E +  +A  +T  G +     +   
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
             LK +N+  N + DE  K L   L     V   Q       D     I EL
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ---EYDDDYSYPMITEL 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 94.2 bits (234), Expect = 2e-20
 Identities = 68/447 (15%), Positives = 144/447 (32%), Gaps = 70/447 (15%)

Query: 153 TLNEFAKELRAFSSVDMSG-RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFD 211
            L   AK  + F  + +S    F  +GL  +A +    +  +E+    + +         
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC---RNLKELDLRESDVDDVSGHWLS 177

Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL-----QLSSVDLRD-EGAKA 265
               +  +L +LN+S                V  + +ERL      L S+ L      + 
Sbjct: 178 HFPDTYTSLVSLNISC-----------LASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226

Query: 266 IAELLKNNSILRVLELN--NNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 323
           +A LL+    L  L        +    ++ L+ AL     +R L    +         L 
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD----AVPAYLP 282

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
                   L  L+L   ++    +  L+        KL  L + +  I   G   +A   
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP----KLQRLWVLDY-IEDAGLEVLA--- 334

Query: 384 KNCKSLLWINLYMND---------IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434
             CK L  + ++ ++         + ++G   ++    +   + ++      + +     
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK---LESVLYFCRQMTNAALIT 391

Query: 435 IARVLKDNSVITSLDLAY-NPIGADGA------KALSEVLKFHGNINTLKLGWCQIGASG 487
           IAR   +   +T   L    P   D             +++   ++  L L    +    
Sbjct: 392 IARNRPN---MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKV 447

Query: 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547
            E++     Y   + +L +   G  D G   +         +L  +++      D    A
Sbjct: 448 FEYIG---TYAKKMEMLSVAFAGDSDLGMHHVLSGCD----SLRKLEIRDCPFGDKALLA 500

Query: 548 IAQALKANEDVAVTSLNLANNFLTKFG 574
            A  L+      + SL +++  ++   
Sbjct: 501 NASKLE-----TMRSLWMSSCSVSFGA 522

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 90.0 bits (223), Expect = 5e-19
 Identities = 55/384 (14%), Positives = 128/384 (33%), Gaps = 38/384 (9%)

Query: 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244
            L       + +   +G         + +  S   L+ + L    + D+ ++ +      
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF-- 129

Query: 245 NAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303
               + L LSS +    +G  AIA   +N   L+ L+L  + +D      L+      ++
Sbjct: 130 -KNFKVLVLSSCEGFSTDGLAAIAATCRN---LKELDLRESDVDDVSGHWLSHFPDTYTS 185

Query: 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363
           + SL+++      +  +AL + +    +L+ L L+  ++  E +  L+         L  
Sbjct: 186 LVSLNISC-LASEVSFSALERLVTRCPNLKSLKLNR-AVPLEKLATLLQRAPQ----LEE 239

Query: 364 LDIG--NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
           L  G     +       ++  +  CK L  ++    D        +     +   +TT++
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR---LTTLN 295

Query: 422 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481
           L    + S     +         +  L +    I   G + L+   K   ++  L++   
Sbjct: 296 LSYATVQSYDLVKLLCQCPK---LQRLWVLDY-IEDAGLEVLASTCK---DLRELRVFPS 348

Query: 482 QIGASGAEF------VADMLRYNNTISILDLRANGLRDEGAKCLAQS------FKVVNEA 529
           +              +  +      +  +      + +     +A++      F++    
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408

Query: 530 LTSIDLAFNEIRDDGAFAIAQALK 553
             + D    E  D G  AI +  K
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCK 432

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 80.7 bits (199), Expect = 4e-16
 Identities = 43/351 (12%), Positives = 96/351 (27%), Gaps = 38/351 (10%)

Query: 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGV 213
           L           S+ ++ R    E L  L +                 +           
Sbjct: 203 LERLVTRCPNLKSLKLN-RAVPLEKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
           L     L+ L+   +      +  +  +    + +  L LS   ++      +       
Sbjct: 261 LSGCKELRCLSGFWD-AVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQCPK- 315

Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG------NYGGALGANALAKGLE 327
             L+ L + + + D +G   LA        +R L +            AL    L     
Sbjct: 316 --LQRLWVLDYIED-AGLEVLASTC---KDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369

Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSS------RKGKLAVLDIGNNSISAKGAFHVAE 381
           G   L  +      + +  +  +     +         +    D         G   +  
Sbjct: 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV- 428

Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
             ++CK L  ++L    + D+  E I    K+   +  + +        G   +      
Sbjct: 429 --EHCKDLRRLSLSGL-LTDKVFEYIGTYAKK---MEMLSVAFAGDSDLGMHHVLSGCDS 482

Query: 442 NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492
              +  L++   P G     A +  L+    + +L +  C +     + + 
Sbjct: 483 ---LRKLEIRDCPFGDKALLANASKLE---TMRSLWMSSCSVSFGACKLLG 527

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 73.4 bits (180), Expect = 7e-14
 Identities = 38/326 (11%), Positives = 97/326 (29%), Gaps = 44/326 (13%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
           +ER     V + +  A + A +++    +R +EL        G    A+  L        
Sbjct: 40  IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVEL-------KGKPHFADFNLVPDGW--- 89

Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
                  G      +         L E+ L    + D+ +  +     +      VL + 
Sbjct: 90  -------GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN----FKVLVLS 138

Query: 368 N-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG-- 424
           +    S  G   +A     C++L  ++L  +D+ D     ++       ++ ++++    
Sbjct: 139 SCEGFSTDGLAAIA---ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484
           + +       +     +   + SL L            L+ +L+    +  L  G     
Sbjct: 196 SEVSFSALERLVTRCPN---LKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAE 248

Query: 485 ASGAEFVADMLRYNNTISILDLR-ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
                +    +  +    +  L             +          LT+++L++  ++  
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS----RLTTLNLSYATVQSY 304

Query: 544 GAFAIAQALKANEDVAVTSLNLANNF 569
               +           +  L + +  
Sbjct: 305 DLVKLLCQCP-----KLQRLWVLDYI 325

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 44/291 (15%)

Query: 139 LSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFA 198
           LSGF           L          +++++S        L  L           +  + 
Sbjct: 270 LSGFWDA----VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC----PKLQRLWV 321

Query: 199 ANGITAAGIKAFDGVLQSNIALKTLNLSG---------NPIGDEGVKCLCDILVDNAGVE 249
            + I  AG++    +  +   L+ L +             + ++G+  +         +E
Sbjct: 322 LDYIEDAGLEV---LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK---LE 375

Query: 250 RLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY-------SGFTSLAEALLENS 302
            +      + +     IA    N +  R+  +     DY        GF ++ E      
Sbjct: 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC---K 432

Query: 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
            +R L L+G          +       K +  L +      D G+  ++SG  S    L 
Sbjct: 433 DLRRLSLSGLLTDK-VFEYIGTYA---KKMEMLSVAFAGDSDLGMHHVLSGCDS----LR 484

Query: 363 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
            L+I +     K     A      +++  + +    +     + +   + +
Sbjct: 485 KLEIRDCPFGDKALLANA---SKLETMRSLWMSSCSVSFGACKLLGQKMPK 532

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 3e-20
 Identities = 68/408 (16%), Positives = 136/408 (33%), Gaps = 75/408 (18%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           + + F  N I     +    +        +LNL+GN I       +     D+A  + L 
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGNDI-----AGIEPGAFDSAVFQSLN 208

Query: 253 LSSVDLRDEGAKAIAELLKNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
                        I + LKN++I  L +    +        +      L   ++ S++L 
Sbjct: 209 FGGTQNLLV----IFKGLKNSTIQSLWLGTFEDMDD--EDISPAVFEGLCEMSVESINLQ 262

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
            +Y   + +N           L+EL L    +    + + + GLS+    L  L +  N 
Sbjct: 263 KHYFFNISSNTFH----CFSGLQELDLTATHL--SELPSGLVGLST----LKKLVLSANK 312

Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
                + +        N  SL  +++  N       E     L+    +  +DL  ++I 
Sbjct: 313 FENLCQISA------SNFPSLTHLSIKGNTK---RLELGTGCLENLENLRELDLSHDDIE 363

Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGN----------- 472
           +     +   L++ S + SL+L+YN   +   +A       E+L                
Sbjct: 364 TSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421

Query: 473 -----INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 527
                +  L L    +          +      +  L+L+ N       +    S + + 
Sbjct: 422 QNLHLLKVLNLSHSLL----DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN-SLQTL- 475

Query: 528 EALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
             L  + L+F ++   D  AF   + +          ++L++N LT  
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMN--------HVDLSHNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 68/391 (17%), Positives = 118/391 (30%), Gaps = 81/391 (20%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL- 269
           +   QS   L TL L+ NP+       L         ++ L      +       +    
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALS----GPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 270 ------LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
                 L +N I             L+VL+  NN I     +    + L+ +T  SL+LN
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLN 187

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNN 369
           GN    +   A       +   + L+  G        + L  S + S    L +    + 
Sbjct: 188 GNDIAGIEPGAFD-----SAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDM 238

Query: 370 SISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
                    F     +    S+  INL  +   +      ++       +  +DL   ++
Sbjct: 239 DDEDISPAVFEGLCEM----SVESINLQKHYFFNI----SSNTFHCFSGLQELDLTATHL 290

Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGNINTLKLGWCQ 482
                S +   L   S +  L L+ N        + S       L   GN         +
Sbjct: 291 -----SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--------TK 337

Query: 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542
               G   + ++      +  LDL  + +      C     +     L S++L++NE   
Sbjct: 338 RLELGTGCLENL----ENLRELDLSHDDIETSD--CCNLQLR-NLSHLQSLNLSYNEPLS 390

Query: 543 --DGAFAIAQALKANEDVAVTSLNLANNFLT 571
               AF     L          L+LA   L 
Sbjct: 391 LKTEAFKECPQL--------ELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 1e-12
 Identities = 51/378 (13%), Positives = 112/378 (29%), Gaps = 59/378 (15%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L  L+L+   I         D       ++ L L++  L           L     L+ L
Sbjct: 59  LTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHL 110

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
                 I     +S+    L N   + SL+L  N+  ++            + L+ L   
Sbjct: 111 FFIQTGI-----SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF----PTEKLKVLDFQ 161

Query: 339 GNSIGDEGIRA-LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
            N+I    +    MS L         L++  N I+      +     +      +N    
Sbjct: 162 NNAI--HYLSKEDMSSLQQA--TNLSLNLNGNDIA-----GIEPGAFDSAVFQSLNFGGT 212

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
                  + + ++    +++        +      +    + + +  + S++L  +    
Sbjct: 213 QNLLVIFKGLKNS--TIQSLWLGTFEDMDDEDISPAVFEGLCEMS--VESINLQKHYFFN 268

Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
             +            +  L L    +       +   L   +T+  L L AN   +    
Sbjct: 269 ISSNTFHC----FSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 518 CLAQSFKVVNEALTSIDLAFNEIR---DDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
             +        +LT + +  N  R     G     + L+         L+L+++ +    
Sbjct: 320 SASN-----FPSLTHLSIKGNTKRLELGTGCLENLENLR--------ELDLSHDDIETSD 366

Query: 575 QVISLFFSFLLHQIKSLF 592
                  +  L  ++SL 
Sbjct: 367 CCNLQLRN--LSHLQSLN 382

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 32/248 (12%)

Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
             G L++   L+ L+LS + I  E   C    L + + ++ L LS  +      +A  E 
Sbjct: 342 GTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
            +    L +L+L    +      S          ++ L+L+ +               G 
Sbjct: 400 PQ----LELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDISSEQLFD----GL 448

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCK 387
            +L+ L+L GN           +      G+L +L +    +S+  + AF       + K
Sbjct: 449 PALQHLNLQGNHF--PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT------SLK 500

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
            +  ++L  N +        +     +     ++L  N+I     S     L   S   +
Sbjct: 501 MMNHVDLSHNRL-----TSSSIEALSHLKGIYLNLASNHISIILPSL----LPILSQQRT 551

Query: 448 LDLAYNPI 455
           ++L  NP+
Sbjct: 552 INLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 55/341 (16%), Positives = 101/341 (29%), Gaps = 55/341 (16%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL-AEALLENSTIRS 306
            E L+ S   L        + L+     L  L+L    I       +  +       + +
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLIN----LTFLDLTRCQI-----YWIHEDTFQSQHRLDT 85

Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI 366
           L L  N    +   AL+    G K+L+ L      I       L     +    L  L +
Sbjct: 86  LVLTANPLIFMAETALS----GPKALKHLFFIQTGISSIDFIPL-HNQKT----LESLYL 136

Query: 367 GNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424
           G+N IS+               + L  ++   N I     E ++    Q  T  +++L G
Sbjct: 137 GSNHISSIKLPKGF------PTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNG 188

Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484
           N+I     + I     D++V  SL+           K L        ++           
Sbjct: 189 NDI-----AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQ-SLWLGTFEDMDDE 241

Query: 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-D 543
                    +     ++  ++L+ +   +  +             L  +DL    + +  
Sbjct: 242 DISPAVFEGL--CEMSVESINLQKHYFFNISSNTFHCF-----SGLQELDLTATHLSELP 294

Query: 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFL 584
                   LK         L L+ N   KF  +  +  S  
Sbjct: 295 SGLVGLSTLK--------KLVLSAN---KFENLCQISASNF 324

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 30/230 (13%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           + I        +  L++   L++LNLS N           +   +   +E L L+   L+
Sbjct: 360 DDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLK 413

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALG 318
            + A++  + L     L+VL L+++++        +E L +    ++ L+L GN+     
Sbjct: 414 VKDAQSPFQNLHL---LKVLNLSHSLL-----DISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378
                  L+    L  L L    +      A  + L      +  +D+ +N ++      
Sbjct: 466 IQKTN-SLQTLGRLEILVLSFCDLSSIDQHAF-TSLKM----MNHVDLSHNRLT-----S 514

Query: 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
            +    +    +++NL  N I    +  +   L       TI+L  N + 
Sbjct: 515 SSIEALSHLKGIYLNLASNHI----SIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 43/299 (14%), Positives = 77/299 (25%), Gaps = 50/299 (16%)

Query: 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
           +     N      G   +   L  +     L  + N    +     +       +L  L 
Sbjct: 15  KTYNCENL-----GLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFS----RLINLTFLD 63

Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINL 394
           L    I                  L  L +  N +   A+ A          K+L  +  
Sbjct: 64  LTRCQIYWIHEDTF-QSQHR----LDTLVLTANPLIFMAETAL------SGPKALKHLFF 112

Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
               I    +      L   +T+ ++ LG N+I     S           +  LD   N 
Sbjct: 113 IQTGI----SSIDFIPLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNA 164

Query: 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514
           I     + +S + +      +L L    I       +      +     L+         
Sbjct: 165 IHYLSKEDMSSLQQAT--NLSLNLNGNDI-----AGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRD--DGAFAIAQALKANEDVAVTSLNLANNFLT 571
             K L  S     ++L        +  D     F     +       V S+NL  ++  
Sbjct: 218 IFKGLKNS---TIQSLWLGTFEDMDDEDISPAVFEGLCEMS------VESINLQKHYFF 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 27/161 (16%)

Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
            +   ++   N + +   +  +R++     +T LDL    I                 ++
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLIN----LTFLDLTRCQIYWIHEDTFQS----QHRLD 84

Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
           TL L    +           L     +  L     G+       L        + L S+ 
Sbjct: 85  TLVLTANPL----IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ-----KTLESLY 135

Query: 535 LAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
           L  N I           + LK         L+  NN +   
Sbjct: 136 LGSNHISSIKLPKGFPTEKLK--------VLDFQNNAIHYL 168

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.7 bits (220), Expect = 2e-18
 Identities = 69/413 (16%), Positives = 137/413 (33%), Gaps = 72/413 (17%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQS--NIALKTLNLSGNPIGDEGVKCLCD--------IL 242
              S AAN + +     +   +    N+ L+ L++SGN    +      +         L
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236

Query: 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302
           +    +        +++D      A L +++  +R L+L++  +    F+  +       
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHLDLSHGFV----FSLNSRVFETLK 290

Query: 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
            ++ L+L  N    +   A      G  +L+ L+L  N +G+        GL      +A
Sbjct: 291 DLKVLNLAYNKINKIADEAF----YGLDNLQVLNLSYNLLGELYSSNF-YGLPK----VA 341

Query: 363 VLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
            +D+  N I+      F         + L  ++L  N +           +    +I  I
Sbjct: 342 YIDLQKNHIAIIQDQTFK------FLEKLQTLDLRDNALTT---------IHFIPSIPDI 386

Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480
            L GN + +        + K N     + L+ N +           +    ++  L L  
Sbjct: 387 FLSGNKLVT--------LPKINLTANLIHLSENRLENLDILYFLLRVP---HLQILILNQ 435

Query: 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540
            +  +   +          ++  L L  N L+      L          L  + L  N +
Sbjct: 436 NRFSSCSGDQTPSENP---SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 541 R--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSL 591
                G F+   AL+         L+L +N LT       L  + L   ++ L
Sbjct: 493 NSLPPGVFSHLTALR--------GLSLNSNRLT------VLSHNDLPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 7e-15
 Identities = 67/387 (17%), Positives = 136/387 (35%), Gaps = 62/387 (16%)

Query: 211 DGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
               ++   L+ L+L  + I                   +  L+L    L D   K    
Sbjct: 66  KEAFRNLPNLRILDLGSSKIYFLHPDA------FQGLFHLFELRLYFCGLSDAVLK--DG 117

Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
             +N   L  L+L+ N I       L  +  + ++++S+  + N    +  + L + L+ 
Sbjct: 118 YFRNLKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQ- 172

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNCK 387
            K+L    L  NS+           ++  +   L +LD+  N                  
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW---------------- 216

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
           ++     + N I    ++  A +L     I     G +NI     +  A + + +  +  
Sbjct: 217 TVDITGNFSNAI----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRH 270

Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
           LDL++  + +      S V +   ++  L L + +I     +   +     + + +L+L 
Sbjct: 271 LDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKI----NKIADEAFYGLDNLQVLNLS 322

Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNL 565
            N L +  +             +  IDL  N I    D  F   + L+        +L+L
Sbjct: 323 YNLLGELYSSNFYG-----LPKVAYIDLQKNHIAIIQDQTFKFLEKLQ--------TLDL 369

Query: 566 ANNFLTKFGQVISLFFSFLLH-QIKSL 591
            +N LT    + S+   FL   ++ +L
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTL 396

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 60/399 (15%), Positives = 111/399 (27%), Gaps = 87/399 (21%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
               Q    L  L L    + D  +K       +   + RL LS   +R          L
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG-- 328
            +   L+ ++ ++N I       L    L+  T+    L  N   +  +    K +    
Sbjct: 148 NS---LKSIDFSSNQIFLVCEHELEP--LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSS-------------------------------- 356
           N  L  L + GN    +      + +S                                 
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262

Query: 357 -RKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALK 412
             +  +  LD+ +  + +     F         K L  +NL  N I      KIA +A  
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFE------TLKDLKVLNLAYNKI-----NKIADEAFY 311

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
               +  ++L  N +        +        +  +DL  N I     +    +      
Sbjct: 312 GLDNLQVLNLSYNLLG----ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL----EK 363

Query: 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTS 532
           + TL L    +           + +  +I  + L  N L          +   +N     
Sbjct: 364 LQTLDLRDNALT---------TIHFIPSIPDIFLSGNKLV---------TLPKINLTANL 405

Query: 533 IDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571
           I L+ N + +         +       +  L L  N  +
Sbjct: 406 IHLSENRLENLDILYFLLRVP-----HLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 59/383 (15%), Positives = 111/383 (28%), Gaps = 58/383 (15%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            + L LS N I                 +E+LQL  +  +        E  +N   LR+L
Sbjct: 26  TERLLLSFNYIRTVTASSF-------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKG-LEGNKSLRELHL 337
           +L ++ I       L     +    +  L L       L    L  G     K+L  L L
Sbjct: 79  DLGSSKI-----YFLHPDAFQGLFHLFELRLYFCG---LSDAVLKDGYFRNLKALTRLDL 130

Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLY 395
             N I    +      L+S    L  +D  +N I    +      +     K+L + +L 
Sbjct: 131 SKNQIRSLYLHPSFGKLNS----LKSIDFSSNQIFLVCEHELEPLQG----KTLSFFSLA 182

Query: 396 MNDIG--DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR--------VLKDNSVI 445
            N +               +N  +  +D+ GN          +          L     I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505
                 ++ I        + +     ++  L L    +        + +      + +L+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGL--ARSSVRHLDLSHGFV----FSLNSRVFETLKDLKVLN 296

Query: 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSL 563
           L  N +       +A       + L  ++L++N +       F     +          +
Sbjct: 297 LAYNKINK-----IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA--------YI 343

Query: 564 NLANNFLTKFGQVISLFFSFLLH 586
           +L  N +         F   L  
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQT 366

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 59/272 (21%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           + ++ A N I     +AF G L +   L+ LNLS N +G+               V  + 
Sbjct: 293 KVLNLAYNKINKIADEAFYG-LDN---LQVLNLSYNLLGELY----SSNFYGLPKVAYID 344

Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLEL-NNNMIDYSGFTSLAEALLENSTIRS----- 306
           L    +     +    L K    L+ L+L +N +       S+ +  L  + + +     
Sbjct: 345 LQKNHIAIIQDQTFKFLEK----LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 307 -----LHLNGNYGGALGANALAKGL----------------------EGNKSLRELHLHG 339
                +HL+ N    L        +                        N SL +L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMN 397
           N +       L   +      L VL + +N +++   G F       +  +L  ++L  N
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS------HLTALRGLSLNSN 514

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
            +       +   L+       +D+  N + +
Sbjct: 515 RLTVLSHNDLPANLE------ILDISRNQLLA 540

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 44/276 (15%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK---GAFHVAEYIKNCK 387
           +   L L  N      IR + +       +L +L++G+          AF       N  
Sbjct: 25  TTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR------NLP 73

Query: 388 SLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446
           +L  ++L  + I       +  DA +    +  + L    +            ++   +T
Sbjct: 74  NLRILDLGSSKI-----YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALT 126

Query: 447 SLDLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLR--YNNTIS 502
            LDL+ N I     ++L     F    ++ ++     QI           L      T+S
Sbjct: 127 RLDLSKNQI-----RSLYLHPSFGKLNSLKSIDFSSNQI----FLVCEHELEPLQGKTLS 177

Query: 503 ILDLRANGLRDEGAKCLAQSFKVV-NEALTSIDLAFNEIRDDGAFAIAQALKANEDVA-- 559
              L AN L    +    +      N  L  +D++ N    D     + A+  ++  +  
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 560 ----VTSLNLANNFLTKFGQVISLFFSFLLHQIKSL 591
               +       + +    Q  + F       ++ L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQ--NTFAGLARSSVRHL 271

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 25/162 (15%)

Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
            T   + L  N I +  AS+          +  L+L              E  +   N+ 
Sbjct: 24  NTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLR 76

Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
            L LG  +I         D  +    +  L L   GL D     L   +    +ALT +D
Sbjct: 77  ILDLGSSKI----YFLHPDAFQGLFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLD 129

Query: 535 LAFNEIRD---DGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
           L+ N+IR      +F    +LK        S++ ++N +   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLK--------SIDFSSNQIFLV 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 86.6 bits (215), Expect = 6e-18
 Identities = 70/394 (17%), Positives = 117/394 (29%), Gaps = 57/394 (14%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCD-----ILVDNAGVERLQLSSVDLRDEGAKA 265
           +        L+   L  N I       L        L       +  +S   L     K 
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP----KI 320

Query: 266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAK 324
                +    L  L + +N I       +   +      ++ L L+ ++           
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDI-----PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
               +  L  L+L  N I      A  S L      L VLD+G N I  +         +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAF-SWLGH----LEVLDLGLNEIGQELTGQE---WR 427

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
             +++  I L  N           ++     ++  + L    +      +     +    
Sbjct: 428 GLENIFEIYLSYNKYLQL----TRNSFALVPSLQRLMLRRVALK--NVDSSPSPFQPLRN 481

Query: 445 ITSLDLAYNPIGADGAKALS-----EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499
           +T LDL+ N I       L      E+L    N     L      A+    +   L+  +
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHN----NLARLWKHANPGGPI-YFLKGLS 536

Query: 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANED 557
            + IL+L +NG  +   +     F+     L  IDL  N +       F    +LK    
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFE-----LKIIDLGLNNLNTLPASVFNNQVSLK---- 587

Query: 558 VAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSL 591
               SLNL  N +T    V    F      +  L
Sbjct: 588 ----SLNLQKNLITS---VEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.4 bits (204), Expect = 2e-16
 Identities = 63/391 (16%), Positives = 116/391 (29%), Gaps = 68/391 (17%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL- 269
             + Q    LK LNL  N +                 +  L L S  ++        +  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQL----SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 270 ------LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
                 L +N +             L+ L L+NN I      S    +  NS+++ L L+
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELS 179

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
            N                   L  L L+   +G      L   L++    +  L + N+ 
Sbjct: 180 SNQIKEFSPGCFH----AIGRLFGLFLNNVQLGPSLTEKLCLELANT--SIRNLSLSNSQ 233

Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
           +S      F          +L  ++L  N++         D+      +    L  NNI 
Sbjct: 234 LSTTSNTTFLGL----KWTNLTMLDLSYNNL----NVVGNDSFAWLPQLEYFFLEYNNIQ 285

Query: 429 SKGASAIA-----RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483
              + ++      R L      T   ++   +      +    LK    +  L +    I
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW-LK---CLEHLNMEDNDI 341

Query: 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFK-VVNEALTSIDLAFNEIRD 542
                   ++M      +  L L  +           ++F  + +  L  ++L  N+I  
Sbjct: 342 ----PGIKSNMFTGLINLKYLSLSNSFT--SLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 543 --DGAFAIAQALKANEDVAVTSLNLANNFLT 571
               AF+    L          L+L  N + 
Sbjct: 396 IESDAFSWLGHL--------EVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 2e-16
 Identities = 66/380 (17%), Positives = 135/380 (35%), Gaps = 45/380 (11%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
            G       L+ L LS N I  + +K     +  N+ +++L+LSS  +++        + 
Sbjct: 138 LGTQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
           +    L  L LNN  +  S    L    L N++IR+L L+ +            GL+   
Sbjct: 196 R----LFGLFLNNVQLGPSLTEKLC-LELANTSIRNLSLSNSQLSTTSNTTFL-GLK-WT 248

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           +L  L L  N++ +       + L      L    +  N+I    +      +    ++ 
Sbjct: 249 NLTMLDLSYNNL-NVVGNDSFAWLPQ----LEYFFLEYNNIQHLFSHS----LHGLFNVR 299

Query: 391 WINLYMN-DIGDEGAEKI----ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445
           ++NL  +          +      + +  + +  +++  N+I        + +      +
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG----IKSNMFTGLINL 355

Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505
             L L+ +          + V   H  ++ L L   +I     +  +D   +   + +LD
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS----KIESDAFSWLGHLEVLD 411

Query: 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD--DGAFAIAQALKANEDVAVTSL 563
           L  N +  E      Q ++   E +  I L++N+       +FA+  +L+         L
Sbjct: 412 LGLNEIGQELT---GQEWRG-LENIFEIYLSYNKYLQLTRNSFALVPSLQR--------L 459

Query: 564 NLANNFLTKFGQVISLFFSF 583
            L    L       S F   
Sbjct: 460 MLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 68/373 (18%), Positives = 121/373 (32%), Gaps = 68/373 (18%)

Query: 217 NIALKTLNLSGN-----PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK 271
            ++ +  + S       P          D+  +   +  L L+   LR   A       +
Sbjct: 3   TVSHEVADCSHLKLTQVPD---------DLPTN---ITVLNLTHNQLRRLPAANFTRYSQ 50

Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNK 330
               L  L++  N I     + L   L +    ++ L+L  N    L     A       
Sbjct: 51  ----LTSLDVGFNTI-----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA----FCT 97

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKS 388
           +L ELHL  NSI             +    L  LD+ +N +S    G           ++
Sbjct: 98  NLTELHLMSNSIQKI-KNNPFVKQKN----LITLDLSHNGLSSTKLGTQV------QLEN 146

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
           L  + L  N I  +  +     +  N ++  ++L  N I          + +    +  L
Sbjct: 147 LQELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR----LFGL 200

Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
            L    +G    + L   L  + +I  L L   Q+  +       +   N  +++LDL  
Sbjct: 201 FLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSY 257

Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLA 566
           N L   G    A   +     L    L +N I+     +      ++         LNL 
Sbjct: 258 NNLNVVGNDSFAWLPQ-----LEYFFLEYNNIQHLFSHSLHGLFNVR--------YLNLK 304

Query: 567 NNFLTKFGQVISL 579
            +F  +   + SL
Sbjct: 305 RSFTKQSISLASL 317

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 8e-14
 Identities = 46/243 (18%), Positives = 79/243 (32%), Gaps = 35/243 (14%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+ L+L  N IG E              +  + LS                     L+ L
Sbjct: 407 LEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQ----LTRNSFALVPSLQRL 459

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
            L    +      S          +  L L+ N    +  + L    EG + L  L L  
Sbjct: 460 MLRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQH 513

Query: 340 NSI-------GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
           N++          G    + GLS     L +L++ +N           E  K+   L  I
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSH----LHILNLESNGFD----EIPVEVFKDLFELKII 565

Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
           +L +N++        A       ++ +++L  N I S          ++   +T LD+ +
Sbjct: 566 DLGLNNLNTL----PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN---LTELDMRF 618

Query: 453 NPI 455
           NP 
Sbjct: 619 NPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 28/222 (12%)

Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK 271
              +    +  + LS N           +       ++RL L  V L++  +       +
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTR----NSFALVPSLQRLMLRRVALKNVDS--SPSPFQ 477

Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG----L 326
               L +L+L+NN I      ++ + +LE    +  L L  N    L  +A   G    L
Sbjct: 478 PLRNLTILDLSNNNI-----ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532

Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
           +G   L  L+L  N   DE    +   L      L ++D+G N+++       A    N 
Sbjct: 533 KGLSHLHILNLESNGF-DEIPVEVFKDLFE----LKIIDLGLNNLN----TLPASVFNNQ 583

Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
            SL  +NL  N I     +    A +    +T +D+  N   
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRN---LTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 46/265 (17%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
           S               +  +   L +    + VL++ +N +       F           
Sbjct: 5   SHEVADCSHL-----KLTQVPDDLPT---NITVLNLTHNQLRRLPAANFT------RYSQ 50

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
           L  +++  N I    ++   +  ++   +  ++L  N +         +     + +T L
Sbjct: 51  LTSLDVGFNTI----SKLEPELCQKLPMLKVLNLQHNELS----QLSDKTFAFCTNLTEL 102

Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
            L  N I     K  +       N+ TL L    +    +            +  L L  
Sbjct: 103 HLMSNSI----QKIKNNPFVKQKNLITLDLSHNGL----SSTKLGTQVQLENLQELLLSN 154

Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLA 566
           N ++   ++ L       N +L  ++L+ N+I+    G F     L          L L 
Sbjct: 155 NKIQALKSEELDIFA---NSSLKKLELSSNQIKEFSPGCFHAIGRL--------FGLFLN 203

Query: 567 NNFLTKFGQVISLFFSFLLHQIKSL 591
           N  L        L        I++L
Sbjct: 204 NVQLGPS-LTEKLCLELANTSIRNL 227

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 211 DGVLQSNIALKTLNLSGNPI----GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
           D +L+    L+ L+L  N +               L   + +  L L S    +      
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI----P 552

Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG 325
            E+ K+   L++++L  N +      +L  ++  N  +++SL+L  N   ++        
Sbjct: 553 VEVFKDLFELKIIDLGLNNL-----NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 326 LEGNKSLRELHLHGNSI 342
               ++L EL +  N  
Sbjct: 608 F---RNLTELDMRFNPF 621

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.2 bits (211), Expect = 1e-17
 Identities = 55/369 (14%), Positives = 128/369 (34%), Gaps = 51/369 (13%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAEL 269
              L+S   +  L L  +         L +I  D  + V  L+L   +L       +  +
Sbjct: 165 SQSLKSIRDIHHLTLHLSES-----AFLLEIFADILSSVRYLELRDTNLARFQFSPLP-V 218

Query: 270 LKNNSILRVLELNNNMI---DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326
            + +S ++ L    +++    ++    L   +LE S +       N  G    +     +
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV-V 277

Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIK 384
                +  + +    I    +   +S + S   K+  + + N+ +              +
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS------Q 331

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
           + KSL +++L  N + +E  +  +       ++ T+ L  N++ S        +L     
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKN 388

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
           +TSLD++ N         + +  ++   +  L L    I          + +   T+ +L
Sbjct: 389 LTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQ---TLEVL 436

Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
           D+  N L          SF +    L  + ++ N+++     ++   L          + 
Sbjct: 437 DVSNNNL---------DSFSLFLPRLQELYISRNKLKTLPDASLFPVLL--------VMK 479

Query: 565 LANNFLTKF 573
           ++ N L   
Sbjct: 480 ISRNQLKSV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 52/374 (13%), Positives = 117/374 (31%), Gaps = 49/374 (13%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
                S  +L+ L+LS N +               + ++ L L     +  G  ++   L
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLS----SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
            N   L+ L + N       F+ +        T +  L +         + +    L+  
Sbjct: 123 TN---LQTLRIGNVET----FSEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKSI 171

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCK 387
           + +  L LH +         L+   +     +  L++ + +++        V E     K
Sbjct: 172 RDIHHLTLHLSE-----SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV--- 444
            L +    + D       K+   + +   +   D   N +     S    V +   V   
Sbjct: 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

Query: 445 -ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
            I  L +    +  D +   S +      +  + +   ++            ++  ++  
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLL----EKVKRITVENSKVF----LVPCSFSQHLKSLEF 338

Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI----RDDGAFAIAQALKANEDVA 559
           LDL  N + +E       + K    +L ++ L+ N +    +        + L       
Sbjct: 339 LDLSENLMVEEY--LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL------- 389

Query: 560 VTSLNLANNFLTKF 573
            TSL+++ N     
Sbjct: 390 -TSLDISRNTFHPM 402

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 34/221 (15%), Positives = 69/221 (31%), Gaps = 40/221 (18%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
               Q   +L+ L+LS N + +E +            ++ L LS   LR        E+L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLRSMQK--TGEIL 383

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
                L  L+++ N         + ++      +R L+L+      +            +
Sbjct: 384 LTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-------Q 431

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
           +L  L +  N++      +    L      L  L I  N +      +            
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPR----LQELYISRNKLKTLPDASLF--------PV 474

Query: 389 LLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
           LL + +  N +     + +      +  ++  I L  N   
Sbjct: 475 LLVMKISRNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 54/392 (13%), Positives = 135/392 (34%), Gaps = 74/392 (18%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N IT  G             L+ L L  +                       ++++++  
Sbjct: 36  NKITYIGHGDLRACAN----LQVLILKSS-----------------------RINTIE-- 66

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALG 318
                   +   +   L  L+L++N +     +SL+ +     + ++ L+L GN    LG
Sbjct: 67  -------GDAFYSLGSLEHLDLSDNHL-----SSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGA 376
             +L   L    +L+ L +       E  R   +GL+S    L  L+I   S+      +
Sbjct: 115 VTSLFPNL---TNLQTLRIGNVETFSEIRRIDFAGLTS----LNELEIKALSLRNYQSQS 167

Query: 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436
                  K+ + +  + L++++     A  +        ++  ++L   N+     S + 
Sbjct: 168 L------KSIRDIHHLTLHLSES----AFLLEIFADILSSVRYLELRDTNLARFQFSPL- 216

Query: 437 RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG--AEFVADM 494
            V + +S +  L    + +  +    L ++L++   ++ ++   C +   G      +D+
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276

Query: 495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQAL 552
           +     +  + +R   +          +   + E +  I +  +++           ++L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336

Query: 553 KANEDVAVTSLNLANNFLTKFGQVISLFFSFL 584
           +         L+L+ N + +     S      
Sbjct: 337 E--------FLDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 48/338 (14%), Positives = 108/338 (31%), Gaps = 52/338 (15%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL-AEALLENSTIRS 306
           ++ L LS   +   G   +         L+VL L ++ I      ++  +A     ++  
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRI-----NTIEGDAFYSLGSLEH 78

Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI 366
           L L+ N+  +L ++          SL+ L+L GN     G+ +L   L++    L  L I
Sbjct: 79  LDLSDNHLSSLSSSWFG----PLSSLKYLNLMGNPYQTLGVTSLFPNLTN----LQTLRI 130

Query: 367 G-NNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDL 422
           G   + S   +  F          SL  + +    +         + +LK  R I  + L
Sbjct: 131 GNVETFSEIRRIDF------AGLTSLNELEIKALSL-----RNYQSQSLKSIRDIHHLTL 179

Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA--DGAKALSEVLKFHGNINTLKLGW 480
             +         +       S +  L+L    +         + EV      +       
Sbjct: 180 HLSESA----FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

Query: 481 CQIGASGAEFVADMLRYNNTISILDLRANGL---RDEGAKCLAQSFKVVNEALTSIDLAF 537
                +    +   +   + +   D   NGL       +  +++  KV    +  + +  
Sbjct: 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

Query: 538 NEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
             +       +++ + +          + + N+ +   
Sbjct: 296 FYLFYDLSTVYSLLEKV--------KRITVENSKVFLV 325

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 59/405 (14%), Positives = 127/405 (31%), Gaps = 71/405 (17%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           E +  ++N I +        + Q  +   +L+LS NP+       +         + +L 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-----NFIQPGAFKEIRLHKLT 206

Query: 253 LS----SVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAEALLENSTIRS 306
           L     S+++     + +A L  +  +L       N+   D S         L N TI  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-----LCNLTIEE 261

Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS---------- 356
             L          + +        ++    L   +I      +   G             
Sbjct: 262 FRLAYLD---YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 357 ----RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
               +   L  L   +N      +        +  SL +++L  N +  +G    + +  
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGC--CSQSDF 370

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG- 471
              ++  +DL  N + +     ++        +  LD  ++ +     K +SE   F   
Sbjct: 371 GTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSL 420

Query: 472 -NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
            N+  L +               +    +++ +L +  N  ++     +          L
Sbjct: 421 RNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNL 472

Query: 531 TSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
           T +DL+  ++      AF    +L+         LN+A+N L   
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQ--------VLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 70/403 (17%), Positives = 111/403 (27%), Gaps = 100/403 (24%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
           DG  QS   L TL L+GN                        + S+              
Sbjct: 69  DGAYQSLSHLSTLILTGN-----------------------PIQSLA---------LGAF 96

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
              S L+ L      +      SL    + +   ++ L++  N    + +  L +     
Sbjct: 97  SGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNL 148

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCK 387
            +L  L L  N I        +  L         LD+  N ++    GAF          
Sbjct: 149 TNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-------EI 200

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD--NSVI 445
            L  + L  N       +     L     +  + LG               L+   N  I
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 446 TSLDLAYNPIGADGAKALSEVLK-------------------FHGNINTLKLGWCQIGAS 486
               LAY     D    L   L                    ++     L+L  C+ G  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 487 GAEFVAD----MLRYNNTISI-----------LDLRANGLRDEGAKCLAQSFKVVNEALT 531
               +          N   +            LDL  NGL  +G  C +QS      +L 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDF-GTTSLK 376

Query: 532 SIDLAFNEIRD-DGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
            +DL+FN +      F   + L          L+  ++ L + 
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQL--------EHLDFQHSNLKQM 411

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 67.4 bits (165), Expect = 5e-12
 Identities = 65/395 (16%), Positives = 127/395 (32%), Gaps = 59/395 (14%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            K L+LS NP+   G             ++ L LS  +++     A   L      L  L
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTIEDGAYQSLSH----LSTL 81

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
            L  N I      SLA       + ++ L        +L        +   K+L+EL++ 
Sbjct: 82  ILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLENFP----IGHLKTLKELNVA 132

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINLYM 396
            N I    +    S L++    L  LD+ +N I         V   +      L ++L +
Sbjct: 133 HNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDLSL 186

Query: 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456
           N +       I     +   +  + L  N       + +   ++  + +    L      
Sbjct: 187 NPM-----NFIQPGAFKEIRLHKLTLRNNFDS---LNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 457 ADGAKALSEVLKFHG----NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512
            +G     +     G     I   +L +          + + L   ++ S++ +    ++
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 513 DEGAKCLAQSFKVVN-----------EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVT 561
           D       Q  ++VN           ++L  +    N+  +  +     +L         
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL--------E 350

Query: 562 SLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC 596
            L+L+ N L+  G      F      +K L  S+ 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFN 383

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 40/216 (18%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+ L+LS N +  +G  C          ++ L LS   +       ++        L  L
Sbjct: 349 LEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHL 401

Query: 280 ELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           +  ++ +    ++S F SL         +  L ++  +              G  SL  L
Sbjct: 402 DFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIF----NGLSSLEVL 450

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWIN 393
            + GNS  +  +  + + L +    L  LD+    +      AF       +  SL  +N
Sbjct: 451 KMAGNSFQENFLPDIFTELRN----LTFLDLSQCQLEQLSPTAF------NSLSSLQVLN 500

Query: 394 LYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
           +  N +     + +      +  ++  I L  N   
Sbjct: 501 MASNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 531

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 60/416 (14%), Positives = 124/416 (29%), Gaps = 75/416 (18%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
             V  + N I    +     + ++     +L++S NPI     +              ++
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG----------IK 205

Query: 253 LSSVDLRD--EGAKAIAELLKNNSILRVLELNNNMI-DYSGFTSLAEALLE---NSTIRS 306
           L  + LR     +  +   L+N + L V  L      D         +++E   + TI  
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK-------- 358
             L      +              ++  + L G SI             S          
Sbjct: 266 FRLTYTNDFSDDIVK----FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 359 ------GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
                   L  L +  N  S               SL +++L  N +   G    + +  
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFKKV------ALPSLSYLDLSRNALSFSGCC--SYSDL 373

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG- 471
              ++  +DL  N         ++        +  LD  ++ +     K ++E   F   
Sbjct: 374 GTNSLRHLDLSFNGAII-----MSANFMGLEELQHLDFQHSTL-----KRVTEFSAFLSL 423

Query: 472 -NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
             +  L + +             +     +++ L +  N  +D     +  +       L
Sbjct: 424 EKLLYLDISYTNT----KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT----NL 475

Query: 531 TSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFL 584
           T +DL+  ++     G F     L+         LN+++N L     + S  ++ L
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQ--------LLNMSHNNLL---FLDSSHYNQL 520

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.1 bits (180), Expect = 9e-14
 Identities = 56/381 (14%), Positives = 119/381 (31%), Gaps = 88/381 (23%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           +E         +  I  F  +      +  ++L+G  I                  +  +
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLAN----VSAMSLAGVSIKYL-----------EDVPKHFK 308

Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312
             S+ +     K    L  +   L+ L L  N        S++   +   ++  L L+ N
Sbjct: 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG------SISFKKVALPSLSYLDLSRN 360

Query: 313 YGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372
                G  + +    G  SLR L L  N      + A   GL      L  LD  ++++ 
Sbjct: 361 ALSFSGCCSYSDL--GTNSLRHLDLSFNGA--IIMSANFMGLEE----LQHLDFQHSTLK 412

Query: 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432
               F       + + LL++++   +   +             ++ T+ + GN+      
Sbjct: 413 RVTEFSA---FLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKD--- 462

Query: 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492
           + ++ V  + + +T LDL+   +                                 +   
Sbjct: 463 NTLSNVFANTTNLTFLDLSKCQL--------------------------------EQISW 490

Query: 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQ 550
            +    + + +L++  N L    +    Q +      L+++D +FN I           +
Sbjct: 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-----LSTLDCSFNRIETSKGILQHFPK 545

Query: 551 ALKANEDVAVTSLNLANNFLT 571
           +L           NL NN + 
Sbjct: 546 SLA--------FFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 55/393 (13%), Positives = 96/393 (24%), Gaps = 86/393 (21%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
           D        L  L L+GN                        + S               
Sbjct: 73  DKAWHGLHHLSNLILTGN-----------------------PIQSF---------SPGSF 100

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
              + L  L      +      SL    +     ++ L++  N+   + +  L       
Sbjct: 101 SGLTSLENLVAVETKL-----ASLESFPIGQLITLKKLNVAHNF---IHSCKLPAYFSNL 152

Query: 330 KSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNC 386
            +L  + L  N I  + I       L         LD+  N I      AF         
Sbjct: 153 TNLVHVDLSYNYI--QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-------QG 203

Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRT---ITTIDLGGNNIHSKGASAIARVLKDNS 443
             L  + L  N       +     L        I        N+     S +  +   + 
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL--CDV 261

Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
            I    L Y    +D             N++ + L    I           +  +     
Sbjct: 262 TIDEFRLTYTNDFSDD----IVKFHCLANVSAMSLAGVSIKYLED------VPKHFKWQS 311

Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
           L +    L+      L          L S+ L  N+           +L          L
Sbjct: 312 LSIIRCQLKQFPTLDLPF--------LKSLTLTMNKGSISFKKVALPSLS--------YL 355

Query: 564 NLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC 596
           +L+ N L+  G     +     + ++ L  S+ 
Sbjct: 356 DLSRNALSFSGC--CSYSDLGTNSLRHLDLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 50/234 (21%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L  L+LS N +   G           + +    L  +DL   GA  ++        L+ L
Sbjct: 352 LSYLDLSRNALSFSGCCSY-------SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404

Query: 280 ELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           +  ++ +    ++S F SL         +  L ++                 G  SL  L
Sbjct: 405 DFQHSTLKRVTEFSAFLSL-------EKLLYLDISYTNTKIDFDGIF----LGLTSLNTL 453

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHV-------------- 379
            + GNS  D  +  + +  ++    L  LD+    +     G F                
Sbjct: 454 KMAGNSFKDNTLSNVFANTTN----LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 380 ----AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
               + +     SL  ++   N I               +++   +L  N++  
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRI----ETSKGILQHFPKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 50/346 (14%), Positives = 107/346 (30%), Gaps = 44/346 (12%)

Query: 248 VERLQLSSVDLRDEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIR 305
           +E +   +    D+    +  ++  +    + ++L+ N +       L      N S ++
Sbjct: 8   IEVVPNITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPL-----KILKSYSFSNFSELQ 59

Query: 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365
            L L+      +   A      G   L  L L GN I         SGL+S    L  L 
Sbjct: 60  WLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPI-QSFSPGSFSGLTS----LENLV 110

Query: 366 IGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG 423
                ++                 +L  +N+  N I      K+         +  +DL 
Sbjct: 111 AVETKLASLESFPIG------QLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLS 161

Query: 424 GNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483
            N I +   + +  + ++  V  SLD++ NPI     +A   +      ++ L L     
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-----KLHELTLRGNFN 216

Query: 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
            ++  +     L   +   ++       R+      +    + +  +    L +     D
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276

Query: 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIK 589
                           V++++LA   +        +   F    + 
Sbjct: 277 DIVKFHCLAN------VSAMSLAGVSIKYLE---DVPKHFKWQSLS 313

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 7e-16
 Identities = 63/364 (17%), Positives = 129/364 (35%), Gaps = 55/364 (15%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+ +  + +P                   E          +    + + L      L  +
Sbjct: 450 LQIIYFANSPFTY---------DNIAVDWEDANSDYAKQYENEELSWSNLKD----LTDV 496

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-----GGALGANALAKGLEGNKSLRE 334
           EL N        T L + L +   ++SL++  N              LA   +    ++ 
Sbjct: 497 ELYNC----PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
            ++  N++ +    A +  +      L +LD  +N +    AF           L  + L
Sbjct: 553 FYMGYNNLEEFPASASLQKMVK----LGLLDCVHNKVRHLEAF------GTNVKLTDLKL 602

Query: 395 YMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
             N I     E+I  D       +  +    N +            K   V+ S+D +YN
Sbjct: 603 DYNQI-----EEIPEDFCAFTDQVEGLGFSHNKLKY---IPNIFNAKSVYVMGSVDFSYN 654

Query: 454 PIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512
            IG++G      +  + G N +T+ L + +I     +F  ++    + IS + L  N + 
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEI----QKFPTELFATGSPISTIILSNNLMT 710

Query: 513 ---DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 569
              +   K    ++K     LT+IDL FN++       ++   +A     +++++++ N 
Sbjct: 711 SIPENSLKPKDGNYK-NTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNC 764

Query: 570 LTKF 573
            + F
Sbjct: 765 FSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.7 bits (173), Expect = 6e-13
 Identities = 57/374 (15%), Positives = 127/374 (33%), Gaps = 54/374 (14%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           LK L+   +     G     + L  +   ER     +  +          L  +  L + 
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK-------MFLDYDQRLNLS 401

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
           +L  + I  +    +    ++  +  SL              ++K ++    L+ ++   
Sbjct: 402 DLLQDAI--NRNPEMKP--IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 340 NSIGDEGIRALMSGLSSRKGK--------------LAVLDIGNNSISAKGAFHVAEYIKN 385
           +    + I       +S   K              L  +++ N     +    + +++ +
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYD 513

Query: 386 CKSLLWINLYMNDI-----GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440
              L  +N+  N             ++AD       I    +G NN+    ASA  + + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
               +  LD  +N +     + L         +  LKL + QI     E   D   + + 
Sbjct: 574 K---LGLLDCVHNKV-----RHLEAFGTNV-KLTDLKLDYNQI----EEIPEDFCAFTDQ 620

Query: 501 ISILDLRANGLRDEGAKCLAQSFKVVN-EALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559
           +  L    N L+      +   F   +   + S+D ++N+I  +G   I+ ++   + + 
Sbjct: 621 VEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGIN 674

Query: 560 VTSLNLANNFLTKF 573
            +++ L+ N + KF
Sbjct: 675 ASTVTLSYNEIQKF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 30/242 (12%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRD-EGAKAIAELLKNNSILRV 278
           + +++ S N IG EG     +I       + +  S+V L   E  K   EL    S +  
Sbjct: 646 MGSVDFSYNKIGSEGR----NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 279 LELNNNMIDY---SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           + L+NN++     +              + ++ L  N   +L  +  A  L     L  +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL---PYLSNM 758

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNCKSLLWIN 393
            +  N              S    +L    I +   +            I  C SL+ + 
Sbjct: 759 DVSYNCF--SSFPTQPLNSS----QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
           +  NDI      K+ + L     +  +D+  N   S   +++   ++         L Y+
Sbjct: 813 IGSNDI-----RKVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAG----MYVLLYD 861

Query: 454 PI 455
             
Sbjct: 862 KT 863

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.5 bits (194), Expect = 2e-15
 Identities = 59/394 (14%), Positives = 114/394 (28%), Gaps = 61/394 (15%)

Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEG--AKAIAELLKNN 273
             I L  L L  N      +K     L   AG+E  +L   + R+EG   K     L+  
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGL---AGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254

Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
             L + E     +DY     + +     + + S  L       +   +       N   +
Sbjct: 255 CNLTIEEFRLAYLDYY-LDDIIDLFNCLTNVSSFSLVSVTIERVKDFS------YNFGWQ 307

Query: 334 ELHLHGNSIGDEGIRALMSGLSSRK--------------GKLAVLDIGNNSISAKGAFHV 379
            L L     G      L S                      L  LD+  N +S KG    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439
           +       SL +++L  N +       ++        +  +D   +N+      ++    
Sbjct: 368 S--DFGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---F 417

Query: 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499
                +  LD+++         A + +     ++  LK+       +   F+ D+     
Sbjct: 418 LSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELR 470

Query: 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANED 557
            ++ LDL    L                 +L  ++++ N     D   +    +L     
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMSHNNFFSLDTFPYKCLNSL----- 520

Query: 558 VAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSL 591
                L+ + N +                 +  L
Sbjct: 521 ---QVLDYSLNHIM---TSKKQELQHFPSSLAFL 548

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 59/411 (14%), Positives = 128/411 (31%), Gaps = 64/411 (15%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           E +  ++N I +        + Q  +   +L+LS NP+       +         + +L 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-----NFIQPGAFKEIRLHKLT 206

Query: 253 LSSVDLRDEGAKAIAELLKNNSILR-VLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311
           L +        K   + L    + R VL    N  +   F   A   L N TI    L  
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS--------------R 357
                   + +        ++    L   +I      +   G                 +
Sbjct: 267 LD---YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
              L  L   +N      +        +  SL +++L  N +  +G    + +     ++
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSL 375

Query: 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINT 475
             +DL  N + +     ++        +  LD  ++ +     K +SE   F    N+  
Sbjct: 376 KYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIY 425

Query: 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
           L +               +    +++ +L +  N  ++     +    +     LT +DL
Sbjct: 426 LDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----NLTFLDL 477

Query: 536 AFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFL 584
           +  ++      AF    +L+         LN+++N       + +  +  L
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQ--------VLNMSHNNFF---SLDTFPYKCL 517

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 5e-13
 Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 37/240 (15%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+ L+LS N +  +G           +      L  +DL   G   ++        L  L
Sbjct: 349 LEFLDLSRNGLSFKG-------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401

Query: 280 ELNNN----MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           +  ++    M ++S F SL         +  L ++  +              G  SL  L
Sbjct: 402 DFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIFN----GLSSLEVL 450

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
            + GNS  +  +  + + L +    L  LD+    +             +  SL  +N+ 
Sbjct: 451 KMAGNSFQENFLPDIFTELRN----LTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMS 502

Query: 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
            N+             K   ++  +D   N+I +     +         +  L+L  N  
Sbjct: 503 HNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS---LAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 68/400 (17%), Positives = 122/400 (30%), Gaps = 98/400 (24%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
           DG  QS   L TL L+GN                        + S+              
Sbjct: 69  DGAYQSLSHLSTLILTGN-----------------------PIQSL---------ALGAF 96

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGN 329
              S L+ L             SL    + +  T++ L++  N    + +  L +     
Sbjct: 97  SGLSSLQKLVAVET-----NLASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNL 148

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFH--------- 378
            +L  L L  N I        +  L         LD+  N ++    GAF          
Sbjct: 149 TNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207

Query: 379 ---------VAEYIKNCKSLLWINLYMNDIGDEG--AEKIADALKQNRTITTIDLGGNNI 427
                    +   I+    L    L + +  +EG   +    AL+    +T  +     +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487
                  I  +    + ++S  L    I         +   ++     L+L  C+ G   
Sbjct: 268 DYYL-DDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFP 320

Query: 488 AEFVADM--LRYNN-------------TISILDLRANGLRDEGAKCLAQSFKVVNEALTS 532
              +  +  L + +             ++  LDL  NGL  +G  C +QS      +L  
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDF-GTTSLKY 377

Query: 533 IDLAFNEIRD-DGAFAIAQALKANEDVAVTSLNLANNFLT 571
           +DL+FN +      F   + L+         L+  ++ L 
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLE--------HLDFQHSNLK 409

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 31/230 (13%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           NG++  G  +         +LK L+LS N +       +    +    +E L     +L+
Sbjct: 357 NGLSFKGCCSQS--DFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLK 409

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319
                    +  +   L  L++++         +        S++  L + GN       
Sbjct: 410 QMSEF---SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNS---FQE 459

Query: 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
           N L       ++L  L L    +         + LSS    L VL++ +N+         
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSS----LQVLNMSHNNFF----SLD 510

Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIH 428
               K   SL  ++  +N I           L+    ++  ++L  N+  
Sbjct: 511 TFPYKCLNSLQVLDYSLNHI----MTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 67/368 (18%), Positives = 117/368 (31%), Gaps = 69/368 (18%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            K L+LS NP+   G             ++ L LS  +++           ++ S L  L
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTI----EDGAYQSLSHLSTL 81

Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
            L  N I      SLA       + ++ L        +L    +       K+L+EL++ 
Sbjct: 82  ILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLENFPIG----HLKTLKELNVA 132

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N I    +    S L++    L  LD+ +N I +         ++    +  +NL    
Sbjct: 133 HNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQS----IYCTDLRVLHQMPLLNL---- 180

Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
                               ++DL  N ++     A          +  L L  N    +
Sbjct: 181 --------------------SLDLSLNPMNFIQPGAFK-----EIRLHKLTLRNNFDSLN 215

Query: 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKC 518
             K   + L     ++ L LG  +   +  +F    L     ++I + R   L       
Sbjct: 216 VMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274

Query: 519 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS 578
           +     + N  ++S  L    I     F+     +         L L N    KFGQ  +
Sbjct: 275 IDLFNCLTN--VSSFSLVSVTIERVKDFSYNFGWQ--------HLELVNC---KFGQFPT 321

Query: 579 LFFSFLLH 586
           L    L  
Sbjct: 322 LKLKSLKR 329

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 44/256 (17%), Positives = 72/256 (28%), Gaps = 35/256 (13%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
           S + L L  N +                  L VLD+    I     GA+       +   
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQ------SLSH 77

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
           L  + L  N I          A     ++  +     N+     S     +     +  L
Sbjct: 78  LSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLA----SLENFPIGHLKTLKEL 129

Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
           ++A+N I +     L E      N+  L L   +I +     +  + +       LDL  
Sbjct: 130 NVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
           N +          +FK +   L  + L  N    +      Q L   E        L   
Sbjct: 187 NPMN----FIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLE-----VHRLVLG 235

Query: 569 FLTKFGQVISLFFSFL 584
                G +     S L
Sbjct: 236 EFRNEGNLEKFDKSAL 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 64/351 (18%), Positives = 118/351 (33%), Gaps = 64/351 (18%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N I       F         L+ L L+ N +             +   +  L L S  L+
Sbjct: 42  NRIKTLNQDEFASFPH----LEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLK 93

Query: 260 DEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGAL 317
                 I   +    S L  L+++ N I       L + + ++   ++SL +  N    +
Sbjct: 94  -----LIPLGVFTGLSNLTKLDISENKI-----VILLDYMFQDLYNLKSLEVGDNDLVYI 143

Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KG 375
              A +    G  SL +L L   ++      AL S L      L VL + + +I+A    
Sbjct: 144 SHRAFS----GLNSLEQLTLEKCNLTSIPTEAL-SHLHG----LIVLRLRHLNINAIRDY 194

Query: 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435
           +F      K    L  + +      D     +         +T++ +   N+     +A+
Sbjct: 195 SF------KRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNL-----TAV 239

Query: 436 -ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVA 492
               ++    +  L+L+YNPI              H    +  ++L   Q+    A    
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSM------LHELLRLQEIQLVGGQL----AVVEP 289

Query: 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
              R  N + +L++  N L       L +S       L ++ L  N +  D
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-----TLEESVFHSVGNLETLILDSNPLACD 335

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 58/346 (16%), Positives = 106/346 (30%), Gaps = 74/346 (21%)

Query: 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296
           C C            Q  +V    +   A+ E +   +  R+L+L  N I      +L +
Sbjct: 7   CECSA----------QDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRI-----KTLNQ 49

Query: 297 ALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS 355
               +   +  L LN N   A+   A         +LR L L  N      ++ +  G+ 
Sbjct: 50  DEFASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNR-----LKLIPLGVF 100

Query: 356 SRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALK 412
           +    L  LDI  N I       F      ++  +L  + +  ND+       I+  A  
Sbjct: 101 TGLSNLTKLDISENKIVILLDYMF------QDLYNLKSLEVGDNDL-----VYISHRAFS 149

Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
              ++  + L   N+ S    A    L     +  L L +  I A    +   +      
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEA----LSHLHGLIVLRLRHLNINAIRDYSFKRL----YR 201

Query: 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR--DEGA-KCLAQSFKVVNEA 529
           +  L++          + +     Y   ++ L +    L      A + L          
Sbjct: 202 LKVLEISHWPY----LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-------- 249

Query: 530 LTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
           L  ++L++N I   +         L          + L    L   
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRL--------QEIQLVGGQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
             +      I A    +F   L     LK L +S  P     +  +    +    +  L 
Sbjct: 179 IVLRLRHLNINAIRDYSFKR-LYR---LKVLEISHWPY----LDTMTPNCLYGLNLTSLS 230

Query: 253 LSSVDLR--DEGAKAIAELLKNNSILRVLELNNNMIDY------SGFTSL---------- 294
           ++  +L      A      +++   LR L L+ N I             L          
Sbjct: 231 ITHCNLTAVPYLA------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 295 ----AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342
                 A    + +R L+++GN    L  +          +L  L L  N +
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNPL 332

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 64/345 (18%), Positives = 119/345 (34%), Gaps = 75/345 (21%)

Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLN 310
            L  V   D G + + + L  +    +L+L NN I     T + +   +N   + +L L 
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKI-----TEIKDGDFKNLKNLHTLILI 84

Query: 311 GNYGGALGANALAK-------GLEGNK----------SLRELHLHGNSIGDEGIRALMSG 353
            N    +   A A         L  N+          +L+EL +H N      I  +   
Sbjct: 85  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE-----ITKVRKS 139

Query: 354 LSSRKGKLAVLDIGNNSISA----KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409
           + +   ++ V+++G N + +     GAF      +  K L +I +   +I       I  
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAF------QGMKKLSYIRIADTNI-----TTIPQ 188

Query: 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469
            L  +  +T + L GN I    A++    LK  + +  L L++N I A    +L+     
Sbjct: 189 GLPPS--LTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT--- 239

Query: 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR--DEGAKCLAQSFKVVN 527
             ++  L L   ++       V   L  +  I ++ L  N +        C         
Sbjct: 240 -PHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 528 EALTSIDLAFNEIR----DDGAFAIAQALKANEDVAVTSLNLANN 568
              + + L  N ++        F               ++ L N 
Sbjct: 294 S-YSGVSLFSNPVQYWEIQPSTFRCVYVR--------AAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 50/270 (18%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA--GVER 250
             +    N I+     AF  +++    L+ L LS N +           L +     ++ 
Sbjct: 79  HTLILINNKISKISPGAFAPLVK----LERLYLSKNQL---------KELPEKMPKTLQE 125

Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
           L++   ++          L +    + V+EL  N +  SG  + A   ++   +  + + 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQ----MIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIA 179

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNN 369
                 +             SL ELHL GN I    + A    GL++    LA L +  N
Sbjct: 180 DTNITTIPQGLPP-------SLTELHLDGNKI--TKVDAASLKGLNN----LAKLGLSFN 226

Query: 370 SIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
           SIS    G+        N   L  ++L  N +      K+   L  ++ I  + L  NNI
Sbjct: 227 SISAVDNGSL------ANTPHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNI 275

Query: 428 HSKGASAIARVLKDNSV--ITSLDLAYNPI 455
            + G++       +      + + L  NP+
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 45/228 (19%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           +E+    N IT      F+G+ Q    +  + L  NP+   G++           +  ++
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQ----MIVVELGTNPLKSSGIEN--GAFQGMKKLSYIR 177

Query: 253 LSSVDLR--DEGA-KAIAEL-LKNNSI-------------LRVLELNNNMIDYSGFTSLA 295
           ++  ++    +G   ++ EL L  N I             L  L L+ N I     +++ 
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-----SAVD 232

Query: 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-G 353
              L N   +R LHLN N    L    +  GL  +K ++ ++LH N+I   G       G
Sbjct: 233 NGSLANTPHLRELHLNNN---KL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287

Query: 354 LSSRKGKLAVLDIGNNSISA----KGAFHVAEYIKNCKSLLWINLYMN 397
            +++K   + + + +N +         F              + L   
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFR------CVYVRAAVQLGNY 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 69/365 (18%), Positives = 137/365 (37%), Gaps = 75/365 (20%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDI----LVDN-----AGVERL-QLSSVDLRDEGAKAIAE 268
           +  L ++G  +   +G++ L ++    L  N     + +  L +L+++ +       I+ 
Sbjct: 46  ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA 105

Query: 269 LLKNNSILRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
           L +N + LR L LN + I D S   +L       + + SL+L  N+  +         L 
Sbjct: 106 L-QNLTNLRELYLNEDNISDISPLANL-------TKMYSLNLGANHNLSD-----LSPLS 152

Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
               L  L +  + +  + +  + + L+     L  L +  N I           + +  
Sbjct: 153 NMTGLNYLTVTESKV--KDVTPI-ANLTD----LYSLSLNYNQIE------DISPLASLT 199

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
           SL +   Y+N I D         +     + ++ +G N I           L + S +T 
Sbjct: 200 SLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITDLSP------LANLSQLTW 247

Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
           L++  N I       ++  +K    +  L +G  QI  S    + ++    + ++ L L 
Sbjct: 248 LEIGTNQI-----SDINA-VKDLTKLKMLNVGSNQI--SDISVLNNL----SQLNSLFLN 295

Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLAN 567
            N L +E  + +          LT++ L+ N I D    A    +         S + AN
Sbjct: 296 NNQLGNEDMEVIGG-----LTNLTTLFLSQNHITDIRPLASLSKM--------DSADFAN 342

Query: 568 NFLTK 572
             + K
Sbjct: 343 QVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 35/186 (18%)

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
           L S  +L       N I D         + +   +  L++ +  + D         L N 
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD------LSPLANL 242

Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
           S L  LE+  N I     + +  A+ + + ++ L++  N    +        L     L 
Sbjct: 243 SQLTWLEIGTNQI-----SDI-NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLN 290

Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
            L L+ N +G+E +  +  GL+     L  L +  N I+          + +   +   +
Sbjct: 291 SLFLNNNQLGNEDMEVI-GGLT----NLTTLFLSQNHITD------IRPLASLSKMDSAD 339

Query: 394 LYMNDI 399
                I
Sbjct: 340 FANQVI 345

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 58/316 (18%), Positives = 110/316 (34%), Gaps = 75/316 (23%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRE 334
            +++   N+ +       L  ALL++   +  L+LN      +   A A       ++++
Sbjct: 53  QKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQK 103

Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWI 392
           L++  N+     IR L   +      L VL +  N +S+  +G FH      N   L  +
Sbjct: 104 LYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH------NTPKLTTL 152

Query: 393 NLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
           ++  N++     E+I  D  +   ++  + L  N +     S I  +          +++
Sbjct: 153 SMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-------FHANVS 200

Query: 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511
           YN +           L     +  L      I              N  ++IL L+ N L
Sbjct: 201 YNLL---------STLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL 244

Query: 512 RDEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANN 568
            D                 L  +DL++NE+       F   Q L          L ++NN
Sbjct: 245 TDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKMQRL--------ERLYISNN 288

Query: 569 FLTKFGQVISLFFSFL 584
            L      ++L+   +
Sbjct: 289 RLVA----LNLYGQPI 300

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 47/368 (12%), Positives = 97/368 (26%), Gaps = 101/368 (27%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
             +L S   ++ LNL+                         Q+  +D             
Sbjct: 68  AALLDSFRQVELLNLNDL-----------------------QIEEID---------TYAF 95

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
                ++ L +  N I       L   + +N   +  L L  N   +L            
Sbjct: 96  AYAHTIQKLYMGFNAI-----RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH----NT 146

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCK 387
             L  L +  N+     +  +          L  L + +N ++                 
Sbjct: 147 PKLTTLSMSNNN-----LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---------P 192

Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
           SL   N+  N +           L     +  +D   N+I+                +T 
Sbjct: 193 SLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVRGPVNVE-------LTI 236

Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
           L L +N +           L  +  +  + L + ++     + +         +  L + 
Sbjct: 237 LKLQHNNLTDTAW------LLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYIS 286

Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNL 565
            N L       L    +     L  +DL+ N +   +       +         + +L L
Sbjct: 287 NNRLVA-----LNLYGQ-PIPTLKVLDLSHNHLLHVERNQPQFDR---------LENLYL 331

Query: 566 ANNFLTKF 573
            +N +   
Sbjct: 332 DHNSIVTL 339

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 29/267 (10%)

Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL-QLSSVDLRDEGAKAIAELL 270
             L +   L  ++LS N +            +      ++ +L  + + +    A+    
Sbjct: 248 AWLLNYPGLVEVDLSYNELEK----------IMYHPFVKMQRLERLYISNNRLVALNLYG 297

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
           +    L+VL+L++N +       +     +   + +L+L+ N    L  +          
Sbjct: 298 QPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHNSIVTLKLSTH-------H 345

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           +L+ L L  N      +RAL   ++    + AV D   +        H     ++ K  L
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVA----RPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401

Query: 391 WINLYMNDIGD--EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
              L    +    E  ++         TI ++    + I  +G   +    +  + +  L
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461

Query: 449 DLAYNPIGADGAKALSEVLKFHGNINT 475
                 +  +  +    +   H  I+T
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGLHAEIDT 488

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 58/316 (18%), Positives = 111/316 (35%), Gaps = 75/316 (23%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRE 334
            +++   N+ +       L  ALL++   +  L+LN      +   A A       ++++
Sbjct: 47  QKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQK 97

Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWI 392
           L++  N+     IR L   +      L VL +  N +S+  +G FH      N   L  +
Sbjct: 98  LYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH------NTPKLTTL 146

Query: 393 NLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
           ++  N++     E+I  D  +   ++  + L  N +     S I  +          +++
Sbjct: 147 SMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-------FHANVS 194

Query: 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511
           YN +           L     +  L      I              N  ++IL L+ N L
Sbjct: 195 YNLL---------STLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL 238

Query: 512 RDEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANN 568
            D                 L  +DL++NE+       F   Q L+         L ++NN
Sbjct: 239 TDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKMQRLE--------RLYISNN 282

Query: 569 FLTKFGQVISLFFSFL 584
            L      ++L+   +
Sbjct: 283 RLVA----LNLYGQPI 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 52/311 (16%), Positives = 95/311 (30%), Gaps = 66/311 (21%)

Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSL-AEALLENSTIRSLHLNGNYGGALGANALAKG 325
           A LL +   + +L LN+  I       +   A     TI+ L++  N    L  +     
Sbjct: 62  AALLDSFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-- 114

Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYI 383
                 L  L L  N +      +L  G+     KL  L + NN++       F      
Sbjct: 115 --NVPLLTVLVLERNDL-----SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF------ 161

Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
           +   SL  + L  N +       +  +L  +  +   ++  N + +         L    
Sbjct: 162 QATTSLQNLQLSSNRL-----THVDLSLIPS--LFHANVSYNLLST---------LAIPI 205

Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
            +  LD ++N I                 +  LKL    +  +        L        
Sbjct: 206 AVEELDASHNSINVVRGPVNV-------ELTILKLQHNNLTDTAWLLNYPGLVE------ 252

Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKANEDVAVTS 562
           +DL  N L         +      + L  + ++ N +   +        LK         
Sbjct: 253 VDLSYNELEKIMYHPFVK-----MQRLERLYISNNRLVALNLYGQPIPTLK--------V 299

Query: 563 LNLANNFLTKF 573
           L+L++N L   
Sbjct: 300 LDLSHNHLLHV 310

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 211 DGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI-A 267
             V Q+   L  L L  N +     G      I  +   +  L +S+ +L       I  
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLER-----IED 158

Query: 268 ELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENSTI---------RSLHLNGNYGG 315
           +  +  + L+ L+L++N    +D S   SL  A +  + +           L  + N   
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218

Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--A 373
            +              L  L L  N++ D      +         L  +D+  N +    
Sbjct: 219 VVRGPVNV-------ELTILKLQHNNLTDTAW---LLNYPG----LVEVDLSYNELEKIM 264

Query: 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433
              F         + L  + +  N +       +    +   T+  +DL  N++      
Sbjct: 265 YHPFV------KMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLH---- 309

Query: 434 AIARVLKDNSVITSLDLAYNPI 455
            + R       + +L L +N I
Sbjct: 310 -VERNQPQFDRLENLYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 55/367 (14%), Positives = 119/367 (32%), Gaps = 82/367 (22%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI-AEL 269
             +L S   ++ LNL+   I +         +   A      +  + +     + +   +
Sbjct: 62  AALLDSFRQVELLNLNDLQIEE---------IDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEG 328
            +N  +L VL L  N +     +SL   +  N   + +L ++ N    +  +        
Sbjct: 113 FQNVPLLTVLVLERNDL-----SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----A 163

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
             SL+ L L  N +    +  + S        L   ++  N +S          +    +
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPS--------LFHANVSYNLLST---------LAIPIA 206

Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
           +  ++   N I       +   +     +T + L  NN+           L +   +  +
Sbjct: 207 VEELDASHNSI-----NVVRGPVNVE--LTILKLQHNNLTDTAW------LLNYPGLVEV 253

Query: 449 DLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
           DL+YN +     + +     F     +  L +   ++       +    +   T+ +LDL
Sbjct: 254 DLSYNEL-----EKIMYHP-FVKMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDL 302

Query: 507 RANGLR--DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
             N L   +       +        L ++ L  N I           LK +    + +L 
Sbjct: 303 SHNHLLHVERNQPQFDR--------LENLYLDHNSIVT---------LKLSTHHTLKNLT 345

Query: 565 LANNFLT 571
           L++N   
Sbjct: 346 LSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 25/147 (17%)

Query: 212 GVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
             L +   L  ++LS N +              V    +ERL +S+  L       +   
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYH------PFVKMQRLERLYISNNRLVA-----LNLY 290

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
            +    L+VL+L++N +       +     +   + +L+L+ N    L  +         
Sbjct: 291 GQPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHNSIVTLKLSTH------- 338

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSS 356
            +L+ L L  N      +RAL   ++ 
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALFRNVAR 365

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 58/407 (14%), Positives = 105/407 (25%), Gaps = 98/407 (24%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            K   ++ + +          +      V+ L LS   L    A  +A   K    L +L
Sbjct: 12  YKIEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTK----LELL 63

Query: 280 ELNNNMI----DYSGFTSLAE---------ALLENSTIRSLHLNGNYGGALGANALAK-- 324
            L++N++    D    ++L            LL   +I +LH   N    +  +      
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123

Query: 325 --GLEGNK-------------SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
              L  NK              ++ L L  N I       L +   +    L  L++  N
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----LEHLNLQYN 179

Query: 370 SISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
            I                   L  ++L  N +       +    +    +T I L  N +
Sbjct: 180 FIYDVKGQVV--------FAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNNKL 226

Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA----LSEVLKFHGNINT-------- 475
                  I + L+ +  +   DL  N       +        V                 
Sbjct: 227 -----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281

Query: 476 -------LKLGWCQIGASGAEFVADMLRYNNT-ISILDLRANGLRDEGAKCLAQSFKVVN 527
                     G        A F   ++       ++L  + +           +  +   
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER------LECERENQ 335

Query: 528 EALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTK 572
                ID    + R   D      QA          +L      L +
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAK--------ITLEQKKKALDE 374

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 58/309 (18%), Positives = 107/309 (34%), Gaps = 61/309 (19%)

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
           AI E+ +N +  ++ ++ ++ +          +L +++  ++ L L+GN    + A  LA
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
                   L  L+L  N +       L   LS+    L  LD+ NN +           +
Sbjct: 56  ----PFTKLELLNLSSNVL--YETLDL-ESLST----LRTLDLNNNYVQE---------L 95

Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
               S+  ++   N+I      +++ +  Q      I L  N I            +   
Sbjct: 96  LVGPSIETLHAANNNI-----SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR--- 145

Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
            +  LDL  N I       L+        +  L L +  I     + V   L+       
Sbjct: 146 -VQYLDLKLNEIDTVNFAELAASSD---TLEHLNLQYNFIYDVKGQVVFAKLKT------ 195

Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKANEDVAVTS 562
           LDL +N L       +   F+     +T I L  N++   + A   +Q L+         
Sbjct: 196 LDLSSNKLAF-----MGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLE--------H 241

Query: 563 LNLANNFLT 571
            +L  N   
Sbjct: 242 FDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 31/281 (11%), Positives = 72/281 (25%), Gaps = 47/281 (16%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ-LSSVDLRDEGAKAIAEL 269
           D        ++ L+L  N I           +           L  ++L+      +   
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYDVKGQ 187

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
           +     L+ L+L++N +       +       + +  + L  N    L    + K L  +
Sbjct: 188 VVFAK-LKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNN---KL--VLIEKALRFS 236

Query: 330 KSLRELHLHGN------------------SIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
           ++L    L GN                  ++  + ++ L            +   G    
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431
                   A +     +L      +        E++    +       ID          
Sbjct: 297 EDLP----APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY---- 348

Query: 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
            + I +V        +L+     +    +       +  G 
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 24/169 (14%)

Query: 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC--DILVDNAGVERLQLSSVDLRDEGAK 264
           +   +  L+ +  L+  +L GN        C    D    N  V+ +   +V       K
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRVQTVAKQTV------KK 274

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALA 323
              +  +  ++  +        +            L+      L   G+    L      
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC---- 330

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372
              E     RE+            R ++  ++ RK     L+    ++ 
Sbjct: 331 -ERENQARQREIDALKEQ-----YRTVIDQVTLRKQAKITLEQKKKALD 373

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 67/373 (17%), Positives = 117/373 (31%), Gaps = 74/373 (19%)

Query: 204 AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGA 263
           A+G +   G+      L +L  + + +   G  C C             L  V   D G 
Sbjct: 4   ASGAETTSGIPD----LDSLPPTYSAMCPFG--CHCH------------LRVVQCSDLGL 45

Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANAL 322
           KA+ + +  +    +L+L NN I     + L +   +    + +L L  N    +   A 
Sbjct: 46  KAVPKEISPD--TTLLDLQNNDI-----SELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98

Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVA 380
           +      + L++L++  N +       +   L S    L  L I +N I    KG F   
Sbjct: 99  S----PLRKLQKLYISKNHL-----VEIPPNLPS---SLVELRIHDNRIRKVPKGVFS-- 144

Query: 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440
                 +++  I +  N + + G             +  + +    +             
Sbjct: 145 ----GLRNMNCIEMGGNPLENSG---FEPGAFDGLKLNYLRISEAKLTGIPKDLPET--- 194

Query: 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
               +  L L +N I A   + L         +  L LG  QI           L +  T
Sbjct: 195 ----LNELHLDHNKIQAIELEDLLRY----SKLYRLGLGHNQI----RMIENGSLSFLPT 242

Query: 501 ISILDLRANGLRD--EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 558
           +  L L  N L     G   L        + L  + L  N I   G           +  
Sbjct: 243 LRELHLDNNKLSRVPAGLPDL--------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 559 AVTSLNLANNFLT 571
               ++L NN + 
Sbjct: 295 YYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 46/225 (20%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
            E+    N I       F G+      +  + + GNP+ + G +       D   +  L+
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRN----MNCIEMGGNPLENSGFE---PGAFDGLKLNYLR 178

Query: 253 LSSVDLRDEGAKAIAEL----LKNNSI-------------LRVLELNNNMIDYSGFTSLA 295
           +S   L          L    L +N I             L  L L +N I       + 
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-----RMIE 233

Query: 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-G 353
              L    T+R LHL+ N    L  + +  GL   K L+ ++LH N+I   G+      G
Sbjct: 234 NGSLSFLPTLRELHLDNN---KL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 354 LSSRKGKLAVLDIGNNSIS----AKGAFHVAEYIKNCKSLLWINL 394
              ++     + + NN +         F            L I  
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFR------CVTDRLAIQF 327

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.1 bits (163), Expect = 9e-12
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)

Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
            IK+  G +Q    +  L L+GN + D + +  L ++         L L    ++D    
Sbjct: 54  DIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNL-------GWLFLDENKIKD---- 101

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
            +   LK+   L+ L L +N I     + +   L+    + SL+L  N    +       
Sbjct: 102 -L-SSLKDLKKLKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKITDI------T 147

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
            L     L  L L  N I D      +  L+    KL  L +  N IS          + 
Sbjct: 148 VLSRLTKLDTLSLEDNQISD------IVPLAGLT-KLQNLYLSKNHIS------DLRALA 194

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
             K+L  + L+  +  ++     ++ L    T+   D    ++ +    +     +  +V
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKNTD---GSLVTPEIISDDGDYEKPNV 250

Query: 445 ITSLDLAYNPI 455
              L    N +
Sbjct: 251 KWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 1e-11
 Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 48/284 (16%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
           +  +  + + I   +G++ L         V +L L+   L D       + L N   L  
Sbjct: 45  IDQIIANNSDIKSVQGIQYL-------PNVTKLFLNGNKLTD------IKPLTNLKNLGW 91

Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
           L L+ N I D S    L         ++SL L  N    +       GL     L  L+L
Sbjct: 92  LFLDENKIKDLSSLKDL-------KKLKSLSLEHNGISDI------NGLVHLPQLESLYL 138

Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
             N I D      ++ LS    KL  L + +N IS          +     L  + L  N
Sbjct: 139 GNNKITD------ITVLSRLT-KLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKN 185

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
            I D        AL   + +  ++L      +K  +  + ++  N+ + + D +      
Sbjct: 186 HISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT-VKNTDGSLVTPEI 238

Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501
                  E      ++         I            R++  +
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.4 bits (156), Expect = 6e-11
 Identities = 46/239 (19%), Positives = 75/239 (31%), Gaps = 55/239 (23%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL--LKNNSILR 277
               NL    + D       ++           +  +   +   K++  +  L N   + 
Sbjct: 23  TIKDNLKKKSVTD--AVTQNEL---------NSIDQIIANNSDIKSVQGIQYLPN---VT 68

Query: 278 VLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
            L LN N + D    T+L         +  L L+ N    L        L+  K L+ L 
Sbjct: 69  KLFLNGNKLTDIKPLTNL-------KNLGWLFLDENKIKDL------SSLKDLKKLKSLS 115

Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396
           L  N I D      ++GL     +L  L +GNN I+          +     L  ++L  
Sbjct: 116 LEHNGISD------INGLVH-LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLED 162

Query: 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
           N I D         L     +  + L  N+I         R L     +  L+L     
Sbjct: 163 NQISD------IVPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 46/265 (17%), Positives = 84/265 (31%), Gaps = 60/265 (22%)

Query: 281 LNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
             +  I       + AE           +L                     S+ ++  + 
Sbjct: 6   TVSTPIKQIFPDDAFAE-------TIKDNLKKKSVTDA------VTQNELNSIDQIIANN 52

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
           + I        + G+      +  L +  N ++        + + N K+L W+ L  N I
Sbjct: 53  SDIKS------VQGIQYLP-NVTKLFLNGNKLT------DIKPLTNLKNLGWLFLDENKI 99

Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459
                + +  +LK  + + ++ L  N I     S I   L     + SL L  N I    
Sbjct: 100 -----KDL-SSLKDLKKLKSLSLEHNGI-----SDIN-GLVHLPQLESLYLGNNKI---- 143

Query: 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD-EGAKC 518
              ++ VL     ++TL L   QI  S    +A +      +  L L  N + D      
Sbjct: 144 -TDIT-VLSRLTKLDTLSLEDNQI--SDIVPLAGL----TKLQNLYLSKNHISDLRALAG 195

Query: 519 LAQSFKVVNEALTSIDLAFNEIRDD 543
           L        + L  ++L   E  + 
Sbjct: 196 L--------KNLDVLELFSQECLNK 212

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 48/207 (23%)

Query: 263 AKAIAELLKNNSI----------LRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNG 311
              +  LL  +S           L  + L N  + D +G             I+ L +N 
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYA-------HNIKDLTINN 75

Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
            +            + G  +L  L + G  +  + I  L SGL+     L +LDI +++ 
Sbjct: 76  IHATNY------NPISGLSNLERLRIMGKDVTSDKIPNL-SGLT----SLTLLDISHSAH 124

Query: 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD--ALKQNRTITTIDLGGNNIHS 429
                      I     +  I+L  N         I D   LK    + ++++  + +H 
Sbjct: 125 DDSI----LTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 430 KGASAIARVLKDNSVITSLDLAYNPIG 456
                  R ++D   +  L      IG
Sbjct: 174 ------YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 36/185 (19%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
           L  + L+   + D  G++           ++ L ++++   +         +   S L  
Sbjct: 46  LTYITLANINVTDLTGIEYA-------HNIKDLTINNIHATN------YNPISGLSNLER 92

Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
           L +    +      +L+   L +  +  L ++ +       +++   +     +  + L 
Sbjct: 93  LRIMGKDVTSDKIPNLSG--LTS--LTLLDISHSAHD----DSILTKINTLPKVNSIDLS 144

Query: 339 GNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
            N  I D  I  L   L     +L  L+I  + +           I++   L  +  +  
Sbjct: 145 YNGAITD--IMPL-KTLP----ELKSLNIQFDGVHD------YRGIEDFPKLNQLYAFSQ 191

Query: 398 DIGDE 402
            IG +
Sbjct: 192 TIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 19/132 (14%)

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
           +     L+ L + G  +  + +  L  +      +  L +S     D     I  L K  
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGL----TSLTLLDISHSAHDDSILTKINTLPK-- 137

Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
             +  ++L+ N        +    L     ++SL++  +           +G+E    L 
Sbjct: 138 --VNSIDLSYNGA-----ITDIMPLKTLPELKSLNIQFDGVHDY------RGIEDFPKLN 184

Query: 334 ELHLHGNSIGDE 345
           +L+    +IG +
Sbjct: 185 QLYAFSQTIGGK 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 50/303 (16%), Positives = 98/303 (32%), Gaps = 55/303 (18%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
            K   ++ + +       L  +      V+ L LS   L    A  +A   K    L +L
Sbjct: 12  YKIEKVTDSSLKQA----LASLRQSAWNVKELDLSGNPLSQISAADLAPFTK----LELL 63

Query: 280 ELNNNMI----DYSGFTSLAE---------ALLENSTIRSLHLNGNYGGALGANALAKGL 326
            L++N++    D    ++L            LL   +I +LH   N    +  +      
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG---- 119

Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
              +  + ++L  N      I  L       + ++  LD+  N I      + AE   + 
Sbjct: 120 ---QGKKNIYLANNK-----ITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASS 168

Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446
            +L  +NL  N I       +         + T+DL  N +     + +    +  + +T
Sbjct: 169 DTLEHLNLQYNFI-----YDV-KGQVVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVT 217

Query: 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
            + L  N +       + + L+F  N+    L              D    N  +  +  
Sbjct: 218 WISLRNNKL-----VLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAK 269

Query: 507 RAN 509
           +  
Sbjct: 270 QTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 56/309 (18%), Positives = 107/309 (34%), Gaps = 61/309 (19%)

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
           AI E+ +N +  ++ ++ ++ +          +L +++  ++ L L+GN    + A  LA
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
                   L  L+L  N +       L   LS+    L  LD+ NN +           +
Sbjct: 56  ----PFTKLELLNLSSNVL--YETLDL-ESLST----LRTLDLNNNYVQE---------L 95

Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
               S+  ++   N+I      +++ +  Q      I L  N I            +   
Sbjct: 96  LVGPSIETLHAANNNI-----SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR--- 145

Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
            +  LDL  N I       L+        +  L L +  I     +    ++     +  
Sbjct: 146 -VQYLDLKLNEIDTVNFAELAASSD---TLEHLNLQYNFI----YDVKGQVV--FAKLKT 195

Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKANEDVAVTS 562
           LDL +N L       +   F+     +T I L  N++   + A   +Q L+         
Sbjct: 196 LDLSSNKLAF-----MGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLE--------H 241

Query: 563 LNLANNFLT 571
            +L  N   
Sbjct: 242 FDLRGNGFH 250

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 40/237 (16%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAG---VERLQLSSVDLRD----EGA 263
                +      L+L+ N +     K +C+  + N        L+LSS+ L+D       
Sbjct: 147 ASFFLNMRRFHVLDLTFNKV-----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201

Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY--GGALGANA 321
                    N+ +  L+L+ N    S         +  + I+SL L+ +Y  G + G   
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 322 LAK-------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA- 373
                     GLE +  ++   L  +      I AL+  + S    L  L +  N I+  
Sbjct: 261 FKDPDNFTFKGLEAS-GVKTCDLSKSK-----IFALLKSVFSHFTDLEQLTLAQNEINKI 314

Query: 374 -KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
              AF           LL +NL  N +G     ++ + L +   +  +DL  N+I +
Sbjct: 315 DDNAFW------GLTHLLKLNLSQNFLG-SIDSRMFENLDK---LEVLDLSYNHIRA 361

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 66/348 (18%), Positives = 105/348 (30%), Gaps = 63/348 (18%)

Query: 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-I 304
           A V  + LS   + +    + + L      L+ L++            +        + +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQD----LQFLKVEQQTPG----LVIRNNTFRGLSSL 81

Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAV 363
             L L+ N    L   A      G  +L  L L   ++    +       L+S    L +
Sbjct: 82  IILKLDYNQFLQLETGAF----NGLANLEVLTLTQCNLDGAVLSGNFFKPLTS----LEM 133

Query: 364 LDIGNN---SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
           L + +N    I     F       N +    ++L  N +     E+      Q +  T +
Sbjct: 134 LVLRDNNIKKIQPASFFL------NMRRFHVLDLTFNKV-KSICEEDLLNF-QGKHFTLL 185

Query: 421 DLGGNNIHS----KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476
            L    +                  N+ IT+LDL+ N      AK   + +     I +L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT-KIQSL 244

Query: 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL-----------AQSFKV 525
            L       S          + N     +    GL   G K                F  
Sbjct: 245 ILSNSYNMGSS-------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297

Query: 526 VNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLT 571
             + L  + LA NEI   DD AF     L          LNL+ NFL 
Sbjct: 298 FTD-LEQLTLAQNEINKIDDNAFWGLTHL--------LKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 52/316 (16%), Positives = 93/316 (29%), Gaps = 71/316 (22%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
            G       L+ L L+   +    +    +       +E L L   +++     +    +
Sbjct: 96  TGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN- 329
           +      VL+L  N +             +      L L+      +    L     GN 
Sbjct: 154 RR---FHVLDLTFNKVKSI--CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 330 ---KSLRELHLHGNSIGDEGIRALMSGLSSRK---------------------------- 358
               S+  L L GN   +   +     ++  K                            
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 359 ------GKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-AD 409
                   +   D+  + I A  K  F       +   L  + L  N+I      KI  +
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFS------HFTDLEQLTLAQNEI-----NKIDDN 317

Query: 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469
           A      +  ++L  N + S  +     + K    +  LDL+YN I A G ++      F
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDK----LEVLDLSYNHIRALGDQS------F 367

Query: 470 HG--NINTLKLGWCQI 483
            G  N+  L L   Q+
Sbjct: 368 LGLPNLKELALDTNQL 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 74/401 (18%), Positives = 128/401 (31%), Gaps = 100/401 (24%)

Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDI---------LVDNAGVERL-QLS 254
           GIK+ DG ++    L  +N S N + D   +K L  +         + D   +  L  L+
Sbjct: 57  GIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 115

Query: 255 SVDLRD---EGAKAIAEL-------LKNNSI-----------LRVLELNNNMIDYSGFTS 293
            + L +        +  L       L +N+I           L+ L   N + D     +
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175

Query: 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353
           L       +T+  L ++ N    +        L    +L  L    N I    I  L   
Sbjct: 176 L-------TTLERLDISSNKVSDI------SVLAKLTNLESLIATNNQI--SDITPL-GI 219

Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
           L+     L  L +  N +   G         +  +L  ++L  N I +         L  
Sbjct: 220 LT----NLDELSLNGNQLKDIGTL------ASLTNLTDLDLANNQISNL------APLSG 263

Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 473
              +T + LG N I +         L   + +T+L+L  N +     + +S +     N+
Sbjct: 264 LTKLTELKLGANQISNISP------LAGLTALTNLELNENQL-----EDISPISNLK-NL 311

Query: 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD-EGAKCLAQSFKVVNEALTS 532
             L L +  I  S    V+ +      +  L    N + D      L          +  
Sbjct: 312 TYLTLYFNNI--SDISPVSSL----TKLQRLFFYNNKVSDVSSLANLTN--------INW 357

Query: 533 IDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
           +    N+I D    A    +        T L L +   T  
Sbjct: 358 LSAGHNQISDLTPLANLTRI--------TQLGLNDQAWTNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 69/400 (17%), Positives = 129/400 (32%), Gaps = 91/400 (22%)

Query: 184 ESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDIL 242
           + + Y     +++F+ N +T   I      L     L  + ++ N I D   +  L    
Sbjct: 62  DGVEYLNNLTQINFSNNQLT--DITPLKN-LTK---LVDILMNNNQIADITPLANL---- 111

Query: 243 VDNAGVERLQLSSVDLRD---EGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299
                     L+ + L +        +  L      L  LEL++N I     + +  AL 
Sbjct: 112 --------TNLTGLTLFNNQITDIDPLKNLTN----LNRLELSSNTI-----SDI-SALS 153

Query: 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG 359
             ++++ L                K L    +L  L +  N + D      +S L+    
Sbjct: 154 GLTSLQQLSFGNQVTDL-------KPLANLTTLERLDISSNKVSD------ISVLAKLT- 199

Query: 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITT 419
            L  L   NN IS          +    +L  ++L  N +     + I   L     +T 
Sbjct: 200 NLESLIATNNQIS------DITPLGILTNLDELSLNGNQL-----KDI-GTLASLTNLTD 247

Query: 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479
           +DL  N I +         L   + +T L L  N I       +S  L     +  L+L 
Sbjct: 248 LDLANNQISNLAP------LSGLTKLTELKLGANQI-----SNISP-LAGLTALTNLELN 295

Query: 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
             Q+           +     ++ L L  N + D     ++         L  +    N+
Sbjct: 296 ENQLEDI------SPISNLKNLTYLTLYFNNISDISP--VSS-----LTKLQRLFFYNNK 342

Query: 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISL 579
           + D  + A    +          L+  +N ++    + +L
Sbjct: 343 VSDVSSLANLTNI--------NWLSAGHNQISDLTPLANL 374

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 53/317 (16%), Positives = 100/317 (31%), Gaps = 78/317 (24%)

Query: 269 LLKNNSI-----------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317
           + ++  I                L    +  +   S  +  L+   + +L  +     ++
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNV--TDTVSQTD--LDQ--VTTLQADRLGIKSI 61

Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377
                  G+E   +L +++   N +    I  L   L+    KL  + + NN I+     
Sbjct: 62  ------DGVEYLNNLTQINFSNNQL--TDITPL-KNLT----KLVDILMNNNQIA----- 103

Query: 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437
                + N  +L  + L+ N I D       D LK    +  ++L  N I    A     
Sbjct: 104 -DITPLANLTNLTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTISDISA----- 151

Query: 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY 497
            L   + +  L              L+        +  L +   ++  S    +A +   
Sbjct: 152 -LSGLTSLQQLSFGNQVTDLKPLANLT-------TLERLDISSNKV--SDISVLAKL--- 198

Query: 498 NNTISILDLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 556
              +  L    N + D      L          L  + L  N+++D G  A    L    
Sbjct: 199 -TNLESLIATNNQISDITPLGILTN--------LDELSLNGNQLKDIGTLASLTNL---- 245

Query: 557 DVAVTSLNLANNFLTKF 573
               T L+LANN ++  
Sbjct: 246 ----TDLDLANNQISNL 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 44/263 (16%), Positives = 84/263 (31%), Gaps = 47/263 (17%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N + +     FD + Q    L  L+LS N +  +G           +      L  +DL 
Sbjct: 38  NKLQSLPHGVFDKLTQ----LTKLSLSSNGLSFKG-------CCSQSDFGTTSLKYLDLS 86

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGG 315
             G   ++        L  L+  ++ +    ++S F SL         +  L ++  +  
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTR 139

Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-- 373
                       G  SL  L + GNS         +  + +    L  LD+    +    
Sbjct: 140 VAFNGIFN----GLSSLEVLKMAGNSF----QENFLPDIFTELRNLTFLDLSQCQLEQLS 191

Query: 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGA 432
             AF+      +  SL  +N+  N+        +     K   ++  +D   N+I +   
Sbjct: 192 PTAFN------SLSSLQVLNMSHNNF-----FSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 433 SAIARVLKDNSVITSLDLAYNPI 455
             +         +  L+L  N  
Sbjct: 241 QELQHFPSS---LAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 39/201 (19%)

Query: 270 LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
           L++N +             L  L L++N + + G  S ++    +  ++ L L+ N    
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFN---- 88

Query: 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--K 374
            G   ++    G + L  L    +++      ++   L +    L  LDI +        
Sbjct: 89  -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----LIYLDISHTHTRVAFN 143

Query: 375 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434
           G F          SL  + +  N   +     I   L+    +T +DL    +     +A
Sbjct: 144 GIF------NGLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTA 194

Query: 435 IARVLKDNSVITSLDLAYNPI 455
                   S +  L++++N  
Sbjct: 195 ----FNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 40/268 (14%), Positives = 88/268 (32%), Gaps = 50/268 (18%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           S   L L  N      +++L  G+  +  +L  L + +N +S KG    ++      SL 
Sbjct: 29  SATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLK 81

Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
           +++L  N +       ++        +  +D   +N+      +   V      +  LD+
Sbjct: 82  YLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDI 133

Query: 451 AYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
           ++                F+G  ++  LK+       +   F+ D+      ++ LDL  
Sbjct: 134 SHTHTRVAFNGI------FNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQ 184

Query: 509 NGLR--DEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSL 563
             L      A   L+         L  ++++ N     D   +    +L+         L
Sbjct: 185 CQLEQLSPTAFNSLSS--------LQVLNMSHNNFFSLDTFPYKCLNSLQ--------VL 228

Query: 564 NLANNFLTKFGQVISLFFSFLLHQIKSL 591
           + + N +    +            +  L
Sbjct: 229 DYSLNHIMTSKKQE---LQHFPSSLAFL 253

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 57/263 (21%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
           +  +  + + I   +G++ L         V +L L+   L D     I  L  N   L  
Sbjct: 48  IDQIIANNSDIKSVQGIQYL-------PNVTKLFLNGNKLTD-----IKPL-ANLKNLGW 94

Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
           L L+ N + D S    L         ++SL L  N    +       GL     L  L+L
Sbjct: 95  LFLDENKVKDLSSLKDL-------KKLKSLSLEHNGISDI------NGLVHLPQLESLYL 141

Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
             N I D  I  L S L+    KL  L + +N IS          +     L  + L  N
Sbjct: 142 GNNKITD--ITVL-SRLT----KLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKN 188

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
            I D        AL   + +  ++L      +K  +  + ++  N+V  +          
Sbjct: 189 HISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT---------- 232

Query: 458 DGAKALSEVLKFHGNINTLKLGW 480
           DG+    E++   G+     + W
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKW 255

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 41/217 (18%)

Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
            IK+  G +Q    +  L L+GN + D + +  L ++         L L    ++D    
Sbjct: 57  DIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNL-------GWLFLDENKVKD---- 104

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
                LK+   L+ L L +N I     + +   L+    + SL+L  N    +       
Sbjct: 105 --LSSLKDLKKLKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKITDI------T 150

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
            L     L  L L  N I D      +  L+    KL  L +  N IS          + 
Sbjct: 151 VLSRLTKLDTLSLEDNQISD------IVPLAGLT-KLQNLYLSKNHIS------DLRALA 197

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
             K+L  + L+  +  ++     ++ L    T+   D
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKNTD 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 41/249 (16%), Positives = 75/249 (30%), Gaps = 54/249 (21%)

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
             +      + +L   S+ D          +     +  +   N+ I +       + I+
Sbjct: 19  SDDAFAETIKDNLKKKSVTD------AVTQNELN-SIDQIIANNSDIKS------VQGIQ 65

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
              ++  + L  N + D         L   + +  + L  N +           LKD   
Sbjct: 66  YLPNVTKLFLNGNKLTDI------KPLANLKNLGWLFLDENKVKD------LSSLKDLKK 113

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
           + SL L +N I       +   L     + +L LG  +I          +L     +  L
Sbjct: 114 LKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKI------TDITVLSRLTKLDTL 161

Query: 505 DLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
            L  N + D      L +        L ++ L+ N I D  A A  + L          L
Sbjct: 162 SLEDNQISDIVPLAGLTK--------LQNLYLSKNHISDLRALAGLKNL--------DVL 205

Query: 564 NLANNFLTK 572
            L +     
Sbjct: 206 ELFSQECLN 214

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 39/241 (16%), Positives = 71/241 (29%), Gaps = 54/241 (22%)

Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
           E       I        +    +   +    ++   S++       A       S+  I 
Sbjct: 6   ETITVPTPIKQ------IFSDDAFA-ETIKDNLKKKSVTD------AVTQNELNSIDQII 52

Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
              +DI           ++    +T + L GN +         + L +   +  L L  N
Sbjct: 53  ANNSDIKS------VQGIQYLPNVTKLFLNGNKLTD------IKPLANLKNLGWLFLDEN 100

Query: 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
            +     K L   LK    + +L L    I         + L +   +  L L  N + D
Sbjct: 101 KV-----KDL-SSLKDLKKLKSLSLEHNGIS------DINGLVHLPQLESLYLGNNKITD 148

Query: 514 -EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572
                 L +        L ++ L  N+I D    A    L         +L L+ N ++ 
Sbjct: 149 ITVLSRLTK--------LDTLSLEDNQISDIVPLAGLTKL--------QNLYLSKNHISD 192

Query: 573 F 573
            
Sbjct: 193 L 193

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 24/210 (11%)

Query: 208 KAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAI 266
               G+L     L+ L+L G  + D  V  L      N+ + RL LS      +   + +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQTL 163

Query: 267 AELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
                    L  L L+                + E   I  L+L+G Y   L  + L+  
Sbjct: 164 LSSCSR---LDELNLSWCFDFTEKHVQVAVAHVSET--ITQLNLSG-YRKNLQKSDLSTL 217

Query: 326 LEGNKSLRELHLHG-NSIGDEGIRALMSGLSSRKGKLAVLDI-GNNSISAKGAFHVAEYI 383
           +    +L  L L     + ++  +            L  L +     I  +    +    
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQL-----NYLQHLSLSRCYDIIPETLLELG--- 269

Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
               +L  + +    + D   + + +AL  
Sbjct: 270 -EIPTLKTLQV-FGIVPDGTLQLLKEALPH 297

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 30/208 (14%), Positives = 76/208 (36%), Gaps = 28/208 (13%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
           V+ + LS+  +       I         L+ L L    +      +LA    +NS +  L
Sbjct: 95  VQHMDLSNSVIEVSTLHGILSQCSK---LQNLSLEGLRLSDPIVNTLA----KNSNLVRL 147

Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHG-NSIGDEGIRALMSGLSSRKGKLAVLDI 366
           +L+G  G      AL   L     L EL+L       ++ ++  ++ +S     +  L++
Sbjct: 148 NLSGCSG--FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---TITQLNL 202

Query: 367 G--NNSISAKGAFHVAEYIKNCKSLLWINL-YMNDIGDEGAEKIADALKQNRTITTIDLG 423
                ++       ++  ++ C +L+ ++L     + ++  ++          +  + L 
Sbjct: 203 SGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLS 255

Query: 424 G-NNIHSKGASAIARVLKDNSVITSLDL 450
              +I  +    +  +      + +L +
Sbjct: 256 RCYDIIPETLLELGEIPT----LKTLQV 279

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 53.3 bits (128), Expect = 8e-08
 Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 29/254 (11%)

Query: 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
           R+L                      S  R  H++ +    +  + L   L     L+ L 
Sbjct: 66  RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLS 124

Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINL- 394
           L G  + D  +  L     ++   L  L++   +  S      +     +C  L  +NL 
Sbjct: 125 LEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFALQTLLS---SCSRLDELNLS 176

Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGG--NNIHSKGASAIARVLKDNSVITSLDLAY 452
           +  D  ++  +        + TIT ++L G   N+     S + R   +   +  LDL+ 
Sbjct: 177 WCFDFTEKHVQVA--VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN---LVHLDLSD 231

Query: 453 NP-IGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRANG 510
           +  +  D  +   +       +  L L  C  I       + ++      +  L +    
Sbjct: 232 SVMLKNDCFQEFFQ----LNYLQHLSLSRCYDIIPETLLELGEIPT----LKTLQVF-GI 282

Query: 511 LRDEGAKCLAQSFK 524
           + D   + L ++  
Sbjct: 283 VPDGTLQLLKEALP 296

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 8e-10
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 317 LGANALAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374
           L A  + +          REL L G  I        +  L +   +   +D  +N I   
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPV------IENLGATLDQFDAIDFSDNEIR-- 55

Query: 375 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGAS 433
                 +     + L  + +  N I      +I + L Q    +T + L  N++      
Sbjct: 56  ----KLDGFPLLRRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNNSLVE---L 103

Query: 434 AIARVLKDNSVITSLDLAYNPI 455
                L     +T L +  NP+
Sbjct: 104 GDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
             N    R L+L    I      +L   L       ++  + N    L       G    
Sbjct: 15  YTNAVRDRELDLRGYKI--PVIENLGATL---DQFDAIDFSDNEIRKL------DGFPLL 63

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
           + L+ L ++ N I       +  GL      L  L + NNS+         + + + KSL
Sbjct: 64  RRLKTLLVNNNRICR-----IGEGLDQALPDLTELILTNNSLV---ELGDLDPLASLKSL 115

Query: 390 LWINLYMNDI 399
            ++ +  N +
Sbjct: 116 TYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 22/131 (16%)

Query: 214 LQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272
             + +  + L+L G  I   E +    D        + +  S  ++R        +    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGATLDQF------DAIDFSDNEIRK------LDGFPL 62

Query: 273 NSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKS 331
              L+ L +NNN I       + E L +    +  L L  N   +L        L   KS
Sbjct: 63  LRRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNN---SLVELGDLDPLASLKS 114

Query: 332 LRELHLHGNSI 342
           L  L +  N +
Sbjct: 115 LTYLCILRNPV 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 46/265 (17%), Positives = 83/265 (31%), Gaps = 57/265 (21%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
              +    + + D           D  G+  L      +         E ++  + L  L
Sbjct: 21  AIKIAAGKSNVTD------TVTQADLDGITTLSAFGTGVTT------IEGVQYLNNLIGL 68

Query: 280 ELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
           EL +N I D +   +L       + I  L L+GN    +        + G +S++ L L 
Sbjct: 69  ELKDNQITDLAPLKNL-------TKITELELSGNPLKNV------SAIAGLQSIKTLDLT 115

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
              I D      ++ L+     L VL +  N I+          +    +L ++++    
Sbjct: 116 STQITD------VTPLAGLS-NLQVLYLDLNQIT------NISPLAGLTNLQYLSIGNAQ 162

Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
           + D         L     +TT+    N I           L     +  + L  N I   
Sbjct: 163 VSD------LTPLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQI--- 207

Query: 459 GAKALSEVLKFHGNINTLKLGWCQI 483
               +S  L    N+  + L    I
Sbjct: 208 --SDVSP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 54/247 (21%)

Query: 214 LQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272
           +Q    L  L L  N I D   +K L             +++ ++L     K +   +  
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNL------------TKITELELSGNPLKNV-SAIAG 105

Query: 273 NSILRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
              ++ L+L +  I D +    L       S ++ L+L+ N    +        L G  +
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGL-------SNLQVLYLDLNQITNI------SPLAGLTN 152

Query: 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391
           L+ L +    + D      ++ L++   KL  L   +N IS          + +  +L+ 
Sbjct: 153 LQYLSIGNAQVSD------LTPLANLS-KLTTLKADDNKISD------ISPLASLPNLIE 199

Query: 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
           ++L  N I D         L     +  + L    I ++           N+ +   ++ 
Sbjct: 200 VHLKNNQISDV------SPLANTSNLFIVTLTNQTITNQPVFY-------NNNLVVPNVV 246

Query: 452 YNPIGAD 458
             P GA 
Sbjct: 247 KGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 44/249 (17%), Positives = 78/249 (31%), Gaps = 54/249 (21%)

Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
                  +  L   G  +        + G+      L  L++ +N I+          +K
Sbjct: 36  TQADLDGITTLSAFGTGVTT------IEGVQYLN-NLIGLELKDNQIT------DLAPLK 82

Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
           N   +  + L  N + +        A+   ++I T+DL    I           L   S 
Sbjct: 83  NLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTSTQITDVTP------LAGLSN 130

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
           +  L L  N I       +S +     N+  L +G  Q+  S    +A++    + ++ L
Sbjct: 131 LQVLYLDLNQI-----TNISPLAGLT-NLQYLSIGNAQV--SDLTPLANL----SKLTTL 178

Query: 505 DLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
               N + D      L          L  + L  N+I D    A    L          +
Sbjct: 179 KADDNKISDISPLASLPN--------LIEVHLKNNQISDVSPLANTSNL--------FIV 222

Query: 564 NLANNFLTK 572
            L N  +T 
Sbjct: 223 TLTNQTITN 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 48/240 (20%), Positives = 76/240 (31%), Gaps = 54/240 (22%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD------EGVKCLCDI-LVDNAGVERLQ 252
           N I+     +F         L  L L  N +         G+  L  + L DNA     Q
Sbjct: 42  NRISHVPAASFRACRN----LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-----Q 92

Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNG 311
           L SVD                  L  L L+   +       L   L    + ++ L+L  
Sbjct: 93  LRSVD---------PATFHGLGRLHTLHLDRCGL-----QELGPGLFRGLAALQYLYLQD 138

Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
           N   AL  +          +L  L LHGN      I ++          L  L +  N +
Sbjct: 139 NALQALPDDTFR----DLGNLTHLFLHGNR-----ISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 372 SA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
           +     AF       +   L+ + L+ N++       +  +AL   R +  + L  N   
Sbjct: 190 AHVHPHAFR------DLGRLMTLYLFANNL-----SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 34/175 (19%)

Query: 287 DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346
              G  ++   +      + + L+GN    + A +        ++L  L LH N +    
Sbjct: 19  PQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFR----ACRNLTILWLHSNVLARID 72

Query: 347 IRALMSGLSSRKGKLAVLDIGNN----SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402
             A  +GL+     L  LD+ +N    S+     FH          L  ++L    +   
Sbjct: 73  AAAF-TGLAL----LEQLDLSDNAQLRSVDP-ATFH------GLGRLHTLHLDRCGL--- 117

Query: 403 GAEKI-ADALKQNRTITTIDLGGNNIHSKGASAI-ARVLKDNSVITSLDLAYNPI 455
             +++     +    +  + L  N + +     +     +D   +T L L  N I
Sbjct: 118 --QELGPGLFRGLAALQYLYLQDNALQA-----LPDDTFRDLGNLTHLFLHGNRI 165

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 61/289 (21%), Positives = 99/289 (34%), Gaps = 49/289 (16%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N I    + +F  +      L+ L LS N I    +     +    A +  L+L    L 
Sbjct: 74  NQIQIIKVNSFKHLRH----LEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLT 125

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHL-NGNYGGAL 317
                A   L K    L+ L L NN I      S+         ++R L L        +
Sbjct: 126 TIPNGAFVYLSK----LKELWLRNNPI-----ESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KG 375
              A   GL    +LR L+L   ++ +  I  L + L      L  LD+  N +SA   G
Sbjct: 177 SEGAFE-GLS---NLRYLNLAMCNLRE--IPNL-TPLIK----LDELDLSGNHLSAIRPG 225

Query: 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASA 434
           +F      +    L  + +  + I     + I  +A    +++  I+L  NN+       
Sbjct: 226 SF------QGLMHLQKLWMIQSQI-----QVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 435 IARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFHGNINTLKLGWCQ 482
                     +  + L +NP   +     LS  +K     NT     C 
Sbjct: 275 ----FTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN 319

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 52/225 (23%)

Query: 270 LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGG 315
           L  N I             L +L+L+ N I      ++        + + +L L  N   
Sbjct: 71  LHENQIQIIKVNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANLNTLELFDNRLT 125

Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG-NNSIS-- 372
            +   A          L+EL L  N      I ++ S   +R   L  LD+G    +S  
Sbjct: 126 TIPNGAFV----YLSKLKELWLRNNP-----IESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432
           ++GAF          +L ++NL M ++      +I   L     +  +DL GN++ +   
Sbjct: 177 SEGAFE------GLSNLRYLNLAMCNL-----REI-PNLTPLIKLDELDLSGNHLSAIRP 224

Query: 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGN 472
            +   ++     +  L +  + I      A         +    N
Sbjct: 225 GSFQGLMH----LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 55/254 (21%), Positives = 88/254 (34%), Gaps = 63/254 (24%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKS 388
           + R L+LH N      I+ +          L +L +  N I     GAF+         +
Sbjct: 65  NTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN------GLAN 113

Query: 389 LLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
           L  + L+ N +       I   A      +  + L  N I S  + A  R+      +  
Sbjct: 114 LNTLELFDNRL-----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS----LRR 164

Query: 448 LDLA-YNPIG--ADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTIS 502
           LDL     +   ++GA        F G  N+  L L  C +           L     + 
Sbjct: 165 LDLGELKRLSYISEGA--------FEGLSNLRYLNLAMCNLRE------IPNLTPLIKLD 210

Query: 503 ILDLRANGLR--DEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANED 557
            LDL  N L     G+ + L          L  + +  ++I+  +  AF   Q+L     
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMH--------LQKLWMIQSQIQVIERNAFDNLQSLV---- 258

Query: 558 VAVTSLNLANNFLT 571
                +NLA+N LT
Sbjct: 259 ----EINLAHNNLT 268

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 63/365 (17%), Positives = 136/365 (37%), Gaps = 55/365 (15%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+   +  +P   E    +C+   +       Q  + DL+ +        LK+   L  +
Sbjct: 208 LRQFYMGNSPFVAEN---ICEAWENENSEYAQQYKTEDLKWDN-------LKD---LTDV 254

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG----LEGNKSLREL 335
           E+ N        T L   L     ++ +++  N G +                 + ++ +
Sbjct: 255 EVYNC----PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
           ++  N++    +   +  +     KL +L+   N +             +   L  +NL 
Sbjct: 311 YIGYNNLKTFPVETSLQKMK----KLGMLECLYNQLEG-----KLPAFGSEIKLASLNLA 361

Query: 396 MNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
            N I      +I A+       +  +    N +        A+ +   SV++++D +YN 
Sbjct: 362 YNQI-----TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV---SVMSAIDFSYNE 413

Query: 455 IGADGAKALSEVLKFHG---NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-- 509
           IG+   K    +        N++++ L   QI    ++F  ++    + +S ++L  N  
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQI----SKFPKELFSTGSPLSSINLMGNML 469

Query: 510 -GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
             +     K   ++FK     LTSIDL FN++       ++   +A     +  ++L+ N
Sbjct: 470 TEIPKNSLKDENENFKN-TYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYN 523

Query: 569 FLTKF 573
             +KF
Sbjct: 524 SFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 32/244 (13%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
           +  ++ S N IG    K    +         V  + LS+  +     K   EL    S L
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS----KFPKELFSTGSPL 459

Query: 277 RVLELNNNM---IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
             + L  NM   I  +      E       + S+ L  N    L  +  A  L     L 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL---PYLV 516

Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNCKSLLW 391
            + L  NS             S+    L    I N   +          E I  C SL  
Sbjct: 517 GIDLSYNSF--SKFPTQPLNSST----LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
           + +  NDI      K+ + +  N  I+ +D+  N   S   S +   ++         L 
Sbjct: 571 LQIGSNDI-----RKVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIE----AGMYMLF 619

Query: 452 YNPI 455
           Y+  
Sbjct: 620 YDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 54/440 (12%), Positives = 128/440 (29%), Gaps = 112/440 (25%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           +G            + +N++ +             V         +  + +  ++S   +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD--LIKDCINSDPQQ 172

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY--GGAL 317
               K+I +  +       +   +N I     T +++A++  + +R  ++  +      +
Sbjct: 173 ----KSIKKSSRITLKDTQIGQLSNNI-----TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 318 GANALAKGLEGN-------------------------------------KSLRELHLHGN 340
                 +  E                                         ++ +++  N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 341 SI-GDEGIRALMSGLSS--RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
                E ++     L+      K+ ++ IG N++     F V   ++  K L  +    N
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYN 340

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
            +     E    A      + +++L  N I        A        + +L  A+N +  
Sbjct: 341 QL-----EGKLPAFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKL-- 389

Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
              K +  +     +++ +                           +D   N +     K
Sbjct: 390 ---KYIPNIF-DAKSVSVMS-------------------------AIDFSYNEIGSVDGK 420

Query: 518 CL----AQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLT 571
                    FK +N  ++SI+L+ N+I       F+    L        +S+NL  N LT
Sbjct: 421 NFDPLDPTPFKGIN--VSSINLSNNQISKFPKELFSTGSPL--------SSINLMGNMLT 470

Query: 572 KFGQVISLFFSFLLHQIKSL 591
           +  +      +        L
Sbjct: 471 EIPKNSLKDENENFKNTYLL 490

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 27/202 (13%), Positives = 60/202 (29%), Gaps = 25/202 (12%)

Query: 231 GDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289
              GV        ++ G V  L L           AI +L +    L VL L ++    +
Sbjct: 71  AQPGVSL------NSNGRVTGLSLEGFGASGRVPDAIGQLTE----LEVLALGSHGEKVN 120

Query: 290 GFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349
                 + +  N +                +     ++ +       L  + I  +  + 
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRM-------HYQKTFVDYDPREDFSDLIKDCINSDPQQK 173

Query: 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409
            +   S    K   +   +N+I+      V++ +     L    +  +    E   +  +
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNIT-----FVSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228

Query: 410 --ALKQNRTITTIDLGGNNIHS 429
               +  +   T DL  +N+  
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKD 250

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 51/268 (19%), Positives = 83/268 (30%), Gaps = 62/268 (23%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI-------LVDNAGVERLQ 252
           N I       F  +      L+ L L  N I    V     +       L DN       
Sbjct: 85  NNIQMIQADTFRHLHH----LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN------W 134

Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHL-N 310
           L+ +          +   +  S LR L L NN I      S+         ++  L L  
Sbjct: 135 LTVIP---------SGAFEYLSKLRELWLRNNPI-----ESIPSYAFNRVPSLMRLDLGE 180

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
                 +   A   GL    +L+ L+L   +I D  +  L + L      L  L++  N 
Sbjct: 181 LKKLEYISEGAFE-GLF---NLKYLNLGMCNIKD--MPNL-TPLVG----LEELEMSGNH 229

Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNI 427
                 G+F          SL  + +  + +       I  +A     ++  ++L  NN+
Sbjct: 230 FPEIRPGSF------HGLSSLKKLWVMNSQV-----SLIERNAFDGLASLVELNLAHNNL 278

Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPI 455
            S               +  L L +NP 
Sbjct: 279 SSLPHDL----FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 39/215 (18%)

Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG 325
           A+  ++   L VL+L  N I       +        +++ +L L  N+   + + A    
Sbjct: 92  ADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-- 144

Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG-NNSIS--AKGAFHVAEY 382
                 LREL L  N      I ++ S   +R   L  LD+G    +   ++GAF     
Sbjct: 145 --YLSKLRELWLRNNP-----IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---- 193

Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
                +L ++NL M +I D         L     +  +++ GN+       +   +    
Sbjct: 194 --GLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS-- 243

Query: 443 SVITSLDLAYNPIGADGAKALS-----EVLKFHGN 472
             +  L +  + +      A         L    N
Sbjct: 244 --LKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 64/223 (28%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
            G  +    L+ L L  N                        + S+          +   
Sbjct: 140 SGAFEYLSKLRELWLRNN-----------------------PIESIP---------SYAF 167

Query: 271 KNNSILRVLEL-NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEG 328
                L  L+L     +       ++E   E    ++ L+L       +        L  
Sbjct: 168 NRVPSLMRLDLGELKKL-----EYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTP 216

Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNC 386
              L EL + GN         +  G       L  L + N+ +S   + AF         
Sbjct: 217 LVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD------GL 265

Query: 387 KSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
            SL+ +NL  N++       +  D     R +  + L  N  +
Sbjct: 266 ASLVELNLAHNNL-----SSLPHDLFTPLRYLVELHLHHNPWN 303

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 55/239 (23%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
               NL    + D    K L              + + +  +   +++   ++  + L+ 
Sbjct: 21  AVKQNLGKQSVTDLVSQKEL------------SGVQNFNGDNSNIQSL-AGMQFFTNLKE 67

Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
           L L++N I D S    L       + +  L +N N    L       G+  +  L  L L
Sbjct: 68  LHLSHNQISDLSPLKDL-------TKLEELSVNRNRLKNL------NGIP-SACLSRLFL 113

Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
             N + D         L   K  L +L I NN +           +     L  ++L+ N
Sbjct: 114 DNNELRD------TDSLIHLK-NLEILSIRNNKLK------SIVMLGFLSKLEVLDLHGN 160

Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456
           +I +         L + + +  IDL G    ++        +K    +   +   +P G
Sbjct: 161 EITN------TGGLTRLKKVNWIDLTGQKCVNE-------PVKYQPELYITNTVKDPDG 206

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 50/235 (21%)

Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
           ++  N   + I    G++   ++       + L LS   + D     +   LK+ + L  
Sbjct: 43  VQNFNGDNSNIQSLAGMQFFTNL-------KELHLSHNQISD-----L-SPLKDLTKLEE 89

Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
           L +N N +      +L    + ++ +  L L+ N             L   K+L  L + 
Sbjct: 90  LSVNRNRL-----KNLNG--IPSACLSRLFLDNNELRDT------DSLIHLKNLEILSIR 136

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N +        +  L     KL VLD+  N I+          +   K + WI+L    
Sbjct: 137 NNKLKS------IVMLGFLS-KLEVLDLHGNEIT------NTGGLTRLKKVNWIDLTGQK 183

Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
             +E  +   + L    T+   D  G  I           + +        + + 
Sbjct: 184 CVNEPVKYQPE-LYITNTVKDPD--GRWISPYY-------ISNGGSYVDGCVLWE 228

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 83/478 (17%), Positives = 151/478 (31%), Gaps = 123/478 (25%)

Query: 206 GIKAF-DGVLQSNI-----ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
            ++ F + VL+ N       +KT     + +    ++    +  DN    +  +S    R
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----R 133

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDY----SGFTSLAEALLENSTIRSLHLNG---- 311
            +    + + L     LR      N++      SG T +A  +  +  ++          
Sbjct: 134 LQPYLKLRQALLE---LRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 312 NYGGALGANALAKGLEG-----NKSLRELHLHGNSI---GDEGIRALMSGLSSRKGK--L 361
           N         + + L+      + +      H ++I          L   L S+  +  L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 362 AVLD-IGNNSISAKGAFHVAEYIKNCKSLL---------------WINLYMNDIG----- 400
            VL  + N       AF++     +CK LL                 ++ ++        
Sbjct: 248 LVLLNVQNAKA-WN-AFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 401 DEGAEKIADALKQNRTITTIDL-----GGNNIHSKGASAIARVLKD-------------N 442
           DE    +   L         DL       N       S IA  ++D             +
Sbjct: 301 DEVKSLLLKYLD----CRPQDLPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCD 353

Query: 443 SVITSLDLAYNPIGADGAKALSEVLK-FHGNIN----TLKLGWCQIGASGAEFVADML-- 495
            + T ++ + N +     + + + L  F  + +     L L W  +  S    V + L  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 496 -------RYNNTISI----LDLRANGLRDEGA--KCLAQSFKVVNEALTSIDLAFNEIRD 542
                     +TISI    L+L+   L +E A  + +   +  + +   S DL       
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHYN-IPKTFDSDDLIPP--YL 469

Query: 543 DGAFA--IAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWCIS 598
           D  F   I   LK  E     +L     F   F     L F FL  +I+    +W  S
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTL-----FRMVF-----LDFRFLEQKIRHDSTAWNAS 517

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 30/222 (13%)

Query: 212 GVLQSNIALKTLNLSGNPI---GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
              +   +L  LNL GNP    G+  +      L           + +           +
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---------RK 168

Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLE 327
                + L  LE++ + +      S     L++   +  L L+      L        ++
Sbjct: 169 DFAGLTFLEELEIDASDL-----QSYEPKSLKSIQNVSHLILHMKQHILLLEIF----VD 219

Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
              S+  L L    +       L +G ++   K       N  I+ +  F V + +    
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR--NVKITDESLFQVMKLLNQIS 277

Query: 388 SLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
            LL +    N +     + +      +  ++  I L  N   
Sbjct: 278 GLLELEFSRNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 39/273 (14%), Positives = 78/273 (28%), Gaps = 62/273 (22%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVD 257
           N IT          +     L+ L L+ N I   +E              +E L LS   
Sbjct: 62  NRITYISNSDLQRCVN----LQALVLTSNGINTIEEDS------FSSLGSLEHLDLSYNY 111

Query: 258 LRDEGAKAI-AELLKNNSILRVLELNNNMI----DYSGFTSL----AEALLENSTIRSLH 308
           L       + +   K  S L  L L  N      + S F+ L       +    T   + 
Sbjct: 112 L-----SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 309 LNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368
                          K   G   L EL +  +      +++           ++ L +  
Sbjct: 167 --------------RKDFAGLTFLEELEIDASD-----LQSYEPKSLKSIQNVSHLILHM 207

Query: 369 NSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI----ADALKQNRTITTIDL 422
                  +             S+  + L   D+      ++     ++L +  T   + +
Sbjct: 208 KQHILLLEIFV------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
              ++       + ++L   S +  L+ + N +
Sbjct: 262 TDESLFQ-----VMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 25/160 (15%), Positives = 50/160 (31%), Gaps = 16/160 (10%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE-L 269
                    L+ L +  + +     +      + +       +S + L  +    + E  
Sbjct: 167 RKDFAGLTFLEELEIDASDL-----QSYEPKSLKSIQ----NVSHLILHMKQHILLLEIF 217

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
           +   S +  LEL +  +D   F+ L      NS I+                + K L   
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSEL-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
             L EL    N      ++++  G+  R   L  + +  N
Sbjct: 277 SGLLELEFSRNQ-----LKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.0 bits (104), Expect = 9e-05
 Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
                      D        ++ L L    +       L      N+ +++    +V + 
Sbjct: 208 KQHILLLEIFVDVTSS----VECLELRDTDLDTFHFSELSTG-ETNSLIKKFTFRNVKIT 262

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGN 312
           DE    + +LL   S L  LE + N +      S+ + + +  ++++ + L+ N
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQL-----KSVPDGIFDRLTSLQKIWLHTN 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 21/270 (7%)

Query: 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244
           S  ++    + S A N + AA ++ + G       LK ++   +             ++ 
Sbjct: 14  SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTD-------IIK 66

Query: 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI 304
           +  ++RL + +  +          +L   S L+ L L N  +  +    L E       +
Sbjct: 67  SLSLKRLTVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLE--ATGPDL 123

Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
             L+L         A            L+ L +             +    +    L+ L
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPA----LSTL 178

Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLG 423
           D+ +N    +     A       +L  + L    +  E    +  AL   R  +  +DL 
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--ETPSGVCSALAAARVQLQGLDLS 236

Query: 424 GNNIHSKGASAIARVLKDNSVITSLDLAYN 453
            N++     +A A      S + SL+L++ 
Sbjct: 237 HNSLRD---AAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 22/249 (8%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           SL+ L +    I    +   +  L      L  L + N  ++      + E       L 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISG--LQELTLENLEVTGTAPPPLLEA--TGPDLN 124

Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
            +NL         A            +  + +   +  +     +         +++LDL
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF----PALSTLDL 180

Query: 451 AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510
           + NP   +     +        +  L L    +  + +   + +      +  LDL  N 
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
           LRD                L S++L+F  +         + +       ++ L+L+ N L
Sbjct: 240 LRDA----AGAPSCDWPSQLNSLNLSFTGL---------KQVPKGLPAKLSVLDLSYNRL 286

Query: 571 TKFGQVISL 579
            +      L
Sbjct: 287 DRNPSPDEL 295

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 36/262 (13%)

Query: 133 GAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA 192
           G G +L                 +  K L     + +         LF     LG +   
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSL-KRLTVRAARIPSRILFGALRVLGISGL- 97

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           +E++     +T  G      +  +   L  LNL                     G++ L 
Sbjct: 98  QELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN--STIRSLHLN 310
           ++     +   + +         L  L+L++N     G   L  AL      T++ L L 
Sbjct: 156 IAQAHSLNFSCEQVRVF----PALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALR 209

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDE--------------------GIRAL 350
                       A        L+ L L  NS+ D                     G++ +
Sbjct: 210 NAGMETPSGVCSA-LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 351 MSGLSSRKGKLAVLDIGNNSIS 372
             GL +   KL+VLD+  N + 
Sbjct: 269 PKGLPA---KLSVLDLSYNRLD 287

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 9e-08
 Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 19/127 (14%)

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
             ++EL L  +   +  +  L         +L  L   N  ++          +     L
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFE----ELEFLSTINVGLT------SIANLPKLNKL 66

Query: 390 LWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
             + L  N +         + L +    +T ++L GN I      +    LK    + SL
Sbjct: 67  KKLELSDNRV-----SGGLEVLAEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSL 118

Query: 449 DLAYNPI 455
           DL    +
Sbjct: 119 DLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 264 KAIAELLKNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321
           + I   L+N +   ++ L L+N+  +      L +       +  L              
Sbjct: 5   RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVG-------- 53

Query: 322 LAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
           L     L     L++L L  N +        +  L+ +   L  L++  N I        
Sbjct: 54  LTSIANLPKLNKLKKLELSDNRVSG-----GLEVLAEKCPNLTHLNLSGNKIK---DLST 105

Query: 380 AEYIKNCKSLLWINLYMNDI 399
            E +K  ++L  ++L+  ++
Sbjct: 106 IEPLKKLENLKSLDLFNCEV 125

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 25/155 (16%)

Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
            L    + +RVL L +  +     T L   L +   +  L L+ N        AL   L 
Sbjct: 435 VLKMEYADVRVLHLAHKDL-----TVL-CHLEQLLLVTHLDLSHN-----RLRALPPALA 483

Query: 328 GNKSLRELHLHGNSIGD-EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
             + L  L    N++ + +G+  L         +L  L + NN +         + + +C
Sbjct: 484 ALRCLEVLQASDNALENVDGVANL--------PRLQELLLCNNRLQQ---SAAIQPLVSC 532

Query: 387 KSLLWINLYMNDIGDEGA--EKIADALKQNRTITT 419
             L+ +NL  N +  E    E++A+ L    +I T
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 35/225 (15%)

Query: 214 LQSNIALKTLNLSGN-----PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
             ++  L    LS           E  K L ++  +N     L +  +    +      E
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKE 403

Query: 269 LLKNNSILRVLE----LNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
            L+  S L+ ++       + +        +   +E + +R LHL            L  
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK--------DLTV 455

Query: 325 --GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
              LE    +  L L  N      +RAL   L++ +  L VL   +N++      +V   
Sbjct: 456 LCHLEQLLLVTHLDLSHN-----RLRALPPALAALR-CLEVLQASDNALE-----NVDG- 503

Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
           + N   L  + L  N +    A +    L     +  ++L GN++
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQP---LVSCPRLVLLNLQGNSL 545

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 19/126 (15%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
           ++REL L      D  I  L +        L  L + N  +           +     L 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFV----NLEFLSLINVGLI------SVSNLPKLPKLK 74

Query: 391 WINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
            + L  N I         D L +    +T ++L GN +      +    LK    + SLD
Sbjct: 75  KLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLD 126

Query: 450 LAYNPI 455
           L    +
Sbjct: 127 LFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 215 QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNS 274
           ++  A++ L L      D  ++ L    V+   +E L L +V L           L    
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVN---LEFLSLINVGLIS------VSNLPKLP 71

Query: 275 ILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLR 333
            L+ LEL+ N I         + L E    +  L+L+GN    +      + L+  + L+
Sbjct: 72  KLKKLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLK 123

Query: 334 ELHLHGNSI 342
            L L    +
Sbjct: 124 SLDLFNCEV 132

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.6 bits (127), Expect = 3e-07
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 21/168 (12%)

Query: 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292
           +GV C       +  V  + LSS  L    + A++  L + + L  L L+N+        
Sbjct: 43  DGVTC------RDDKVTSIDLSSKPLNVGFS-AVSSSLLSLTGLESLFLSNS-----HIN 90

Query: 293 SLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
                   ++++ SL L+ N   G +        L     L+ L++  N++   G  +  
Sbjct: 91  GSVSGFKCSASLTSLDLSRNSLSGPVTTL---TSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
             L+S    L VLD+  NSIS             C  L  + +  N I
Sbjct: 148 LKLNS----LEVLDLSANSISGANVVGWV-LSDGCGELKHLAISGNKI 190

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 83/383 (21%), Positives = 134/383 (34%), Gaps = 85/383 (22%)

Query: 220 LKTLNLSGNPIGDE--GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILR 277
           L++L LS + I     G KC          +  L LS   L   G       L + S L+
Sbjct: 79  LESLFLSNSHINGSVSGFKCSAS-------LTSLDLSRNSL--SGPVTTLTSLGSCSGLK 129

Query: 278 VLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL-GANALAKGLEGN-KSLREL 335
            L +++N +D+ G  S    L   +++  L L+ N    + GAN +   L      L+ L
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKL---NSLEVLDLSANS---ISGANVVGWVLSDGCGELKHL 183

Query: 336 HLHGNSIGDEGIRALMSG------LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
            + GN I         SG        +    L  LD+ +N+ S          + +C +L
Sbjct: 184 AISGNKI---------SGDVDVSRCVN----LEFLDVSSNNFS--TGIPF---LGDCSAL 225

Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
             +++  N +   G    + A+     +  +++  N           + L        L 
Sbjct: 226 QHLDISGNKL--SG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL------QYLS 275

Query: 450 LAYN----PIGADGAKALS--EVL-----KFHGNI----------NTLKLGWCQIGASGA 488
           LA N     I    + A      L      F+G +           +L L       SG 
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF--SG- 332

Query: 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548
           E   D L     + +LDL  N    E    L +S   ++ +L ++DL+ N         I
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGP----I 384

Query: 549 AQALKANEDVAVTSLNLANNFLT 571
              L  N    +  L L NN  T
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 65/313 (20%), Positives = 108/313 (34%), Gaps = 56/313 (17%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRE 334
           L+ L L NN    +G   +   L   S + SLHL+ NY  G + ++     L     LR+
Sbjct: 396 LQELYLQNNGF--TG--KIPPTLSNCSELVSLHLSFNYLSGTIPSS-----LGSLSKLRD 446

Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
           L L  N +  EG   +   L   K  L  L +  N ++  G   +   + NC +L WI+L
Sbjct: 447 LKLWLNML--EG--EIPQELMYVK-TLETLILDFNDLT--G--EIPSGLSNCTNLNWISL 497

Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN- 453
             N +  E    I   + +   +  + L  N+    G   I   L D   +  LDL  N 
Sbjct: 498 SNNRLTGE----IPKWIGRLENLAILKLSNNSFS--G--NIPAELGDCRSLIWLDLNTNL 549

Query: 454 -----PIGADGAKALSEVLKFHGNI-----NTLKLGWCQIGASGAEFVADMLRYNNTIS- 502
                P                G       N      C    +  EF        N +S 
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 503 --ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF--AIAQALKANEDV 558
               ++ +       +          N ++  +D+++N +   G     I   +      
Sbjct: 610 RNPCNITSRVYGGHTSPTFDN-----NGSMMFLDMSYNML--SGYIPKEIGS-MP----- 656

Query: 559 AVTSLNLANNFLT 571
            +  LNL +N ++
Sbjct: 657 YLFILNLGHNDIS 669

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 29/173 (16%)

Query: 261 EGAKAIAEL-LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319
           +  +   E      +    +EL+           +   L      + L L+ N       
Sbjct: 9   DAIRIFEERKSVVATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTN------- 58

Query: 320 NALAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377
             + K   L G ++LR L L  N I        +  L +    L  L I  N I+     
Sbjct: 59  -NIEKISSLSGMENLRILSLGRNLIKK------IENLDAVADTLEELWISYNQIA----- 106

Query: 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430
                I+   +L  + +  N I +       D L     +  + L GN +++ 
Sbjct: 107 -SLSGIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLAGNPLYND 155

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 22/141 (15%)

Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
            I+  D  L +  A K L LS N I     +  + ++         L L    ++     
Sbjct: 36  PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENL-------RILSLGRNLIKK---- 84

Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
            I  L      L  L ++ N I      SL   + +   +R L+++ N    +       
Sbjct: 85  -IENLDAVADTLEELWISYNQI-----ASL-SGIEKLVNLRVLYMSNNK---ITNWGEID 134

Query: 325 GLEGNKSLRELHLHGNSIGDE 345
            L     L +L L GN + ++
Sbjct: 135 KLAALDKLEDLLLAGNPLYND 155

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 48/360 (13%), Positives = 88/360 (24%), Gaps = 107/360 (29%)

Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
           L  N  L  L    N + +         +     +  L   +  L           +  N
Sbjct: 81  LSQNTNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLTKLD-------VSQN 126

Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
            +L  L    N +     T +   +  N+ +  L  + N             +     L 
Sbjct: 127 PLLTYLNCARNTL-----TEI--DVSHNTQLTELDCHLN------KKITKLDVTPQTQLT 173

Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
            L    N I +  +    S        L  L+   N+I+          +     L +++
Sbjct: 174 TLDCSFNKITELDV----SQNK----LLNRLNCDTNNITKLD-------LNQNIQLTFLD 218

Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
              N +         D +     +T  D   N +     S         S +T+L     
Sbjct: 219 CSSNKL------TEID-VTPLTQLTYFDCSVNPLTELDVST-------LSKLTTLHCIQT 264

Query: 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
            +           +    N   +                        I  LD+       
Sbjct: 265 DL---------LEIDLTHNTQLIYF---------------QAEGCRKIKELDVTH----- 295

Query: 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
                        N  L  +D     I +         L  +++  +  L L N  LT+ 
Sbjct: 296 -------------NTQLYLLDCQAAGITE---------LDLSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 26/177 (14%), Positives = 50/177 (28%), Gaps = 42/177 (23%)

Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
                   D      L       +T+ SL  + +    +       G+E    L +L   
Sbjct: 26  AAFEMQATDTISEEQL-------ATLTSLDCHNSSITDM------TGIEKLTGLTKLICT 72

Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
            N+I    +             L  L   +N ++          +     L ++N   N 
Sbjct: 73  SNNITTLDLSQN--------TNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNK 117

Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
           +           + QN  +T ++   N +           +  N+ +T LD   N  
Sbjct: 118 LTK-------LDVSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 41/186 (22%)

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
            +  + L  L+ +N+ I     T +   + + + +  L    N    L        L  N
Sbjct: 38  EEQLATLTSLDCHNSSI-----TDM-TGIEKLTGLTKLICTSNNITTL-------DLSQN 84

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
            +L  L    N + +  +  L         KL  L+   N ++          +     L
Sbjct: 85  TNLTYLACDSNKLTNLDVTPLT--------KLTYLNCDTNKLTKLD-------VSQNPLL 129

Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
            ++N   N +      +I   +  N  +T +D   N   +K        +   + +T+LD
Sbjct: 130 TYLNCARNTL-----TEI--DVSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLD 176

Query: 450 LAYNPI 455
            ++N I
Sbjct: 177 CSFNKI 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 39/201 (19%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N +    +       +    L  LNL    +    V      L          L ++DL 
Sbjct: 41  NLLYTFSLATLMPYTR----LTQLNLDRAELTKLQVD---GTLP--------VLGTLDLS 85

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALG 318
               +++  L +    L VL+++ N +     TSL    L     ++ L+L GN    L 
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGA 376
              L         L +L L  N+     +  L +GL +    L  L +  NS+    KG 
Sbjct: 141 PGLLTP-T---PKLEKLSLANNN-----LTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 377 FHVAEYIKNCKSLLWINLYMN 397
           F           L +  L+ N
Sbjct: 192 F-------GSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 39/180 (21%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           L+ L+   N +       L ++    A ++ L + +  L       + EL      L  +
Sbjct: 102 LEYLDACDNRL-----STLPELP---ASLKHLDVDNNQLT-----MLPELPAL---LEYI 145

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
             +NN +     T L E     +++  L +  N    L    L +  E   SL  L +  
Sbjct: 146 NADNNQL-----TMLPELP---TSLEVLSVRNN---QL--TFLPELPE---SLEALDVST 189

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
           N +  E + A+       +          N I+     H+ E I +      I L  N +
Sbjct: 190 NLL--ESLPAVPVRNHHSEETEIFFRCRENRIT-----HIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 54/236 (22%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
              L L+   +       L D L     +  L+++   L      ++ EL  +   L  L
Sbjct: 61  FSELQLNRLNL-----SSLPDNLPPQ--ITVLEITQNALI-----SLPELPAS---LEYL 105

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
           +  +N +     ++L E     ++++ L ++ N    L         E    L  ++   
Sbjct: 106 DACDNRL-----STLPELP---ASLKHLDVDNNQLTMLP--------ELPALLEYINADN 149

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
           N +         + L      L VL + NN ++      + E  ++ ++L   ++  N +
Sbjct: 150 NQL---------TMLPELPTSLEVLSVRNNQLT-----FLPELPESLEAL---DVSTNLL 192

Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
            +              T        N I       I   +       ++ L  NP+
Sbjct: 193 -ESLPAVPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPL 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 60/386 (15%), Positives = 132/386 (34%), Gaps = 92/386 (23%)

Query: 220 LKTLNLSGNPIGD--EGVKCLCDILVDNAGVERL-----QLSSVDLRDEGAKAIAELLKN 272
           L++L  S N + +  E  + L  +LVDN  ++ L      L  + + +   + + EL  +
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152

Query: 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSL 332
           +  L++++++NN +       L +      ++  +    N    L        L+    L
Sbjct: 153 SF-LKIIDVDNNSL-----KKLPDLP---PSLEFIAAGNNQLEEL------PELQNLPFL 197

Query: 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
             ++   NS+           L      L  +  GNN +       + E ++N   L  I
Sbjct: 198 TAIYADNNSL---------KKLPDLPLSLESIVAGNNILE-----ELPE-LQNLPFLTTI 242

Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
               N +     + + D       +  +++  N +          + +    +T LD++ 
Sbjct: 243 YADNNLL-----KTLPDLPPS---LEALNVRDNYLTD--------LPELPQSLTFLDVSE 286

Query: 453 NPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512
           N         LSE+     N+  L     +I +              ++  L++  N L 
Sbjct: 287 NIF-----SGLSELP---PNLYYLNASSNEIRSLCDLP--------PSLEELNVSNNKL- 329

Query: 513 DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572
                        +   L  +  +FN + +     + +  +      +  L++  N L +
Sbjct: 330 --------IELPALPPRLERLIASFNHLAE-----VPELPQN-----LKQLHVEYNPLRE 371

Query: 573 F----GQVISLFFSFLLHQIKSLFHS 594
           F      V  L  +  L ++  L  +
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQN 397

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 49/369 (13%), Positives = 111/369 (30%), Gaps = 52/369 (14%)

Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL--QLSSVDLRDEGAKAIA 267
              V   +++   L+L    I     + L         +      L SV +         
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM------- 215

Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
             +     L++  +  N  +     +    L    T+ ++ L         +  L +   
Sbjct: 216 -SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAFHVAEYIKN 385
             + +  L+++  +I +   R   +   +    L +  + N          +        
Sbjct: 275 -PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY------SV 327

Query: 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445
              +    L ++D                 + T ++   N          + + +    +
Sbjct: 328 FAEMNIKMLSISDTPFI----HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR----L 379

Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML-RYNNTISIL 504
            +L L  N +     K   +V     N+++L+     +  S      D    +  +I +L
Sbjct: 380 QTLILQRNGL-----KNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVL 433

Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED--VAVTS 562
           +L +N L     +CL          +  +DL  N I          ++  +     A+  
Sbjct: 434 NLSSNMLTGSVFRCLPPK-------VKVLDLHNNRI---------MSIPKDVTHLQALQE 477

Query: 563 LNLANNFLT 571
           LN+A+N L 
Sbjct: 478 LNVASNQLK 486

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 47/220 (21%)

Query: 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD-------EGVKCLCDILV 243
            A E+ F    +      AF G       L+ + +S N + +         +  L +I +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSG----FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303
           + A      L  ++          E  +N   L+ L ++N  I       L +    +S 
Sbjct: 87  EKAN----NLLYIN---------PEAFQNLPNLQYLLISNTGI-----KHLPDVHKIHSL 128

Query: 304 -IRSLHLNGNYG-GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
               L +  N     +  N+   GL        L L+ N     GI+ + +   +     
Sbjct: 129 QKVLLDIQDNINIHTIERNSFV-GLSFE--SVILWLNKN-----GIQEIHNSAFNGTQLD 180

Query: 362 AVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDI 399
            +    NN++       FH           + +++    I
Sbjct: 181 ELNLSDNNNLEELPNDVFH------GASGPVILDISRTRI 214

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 63/258 (24%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
           N +   G  +F    +    L+ L+LS                         ++ +++  
Sbjct: 38  NPLRHLGSYSFFSFPE----LQVLDLSRC-----------------------EIQTIE-- 68

Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALG 318
                A   L      L  L L  N I      SLA       + ++ L        +L 
Sbjct: 69  ---DGAYQSLSH----LSTLILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGA 376
                  L   K+L+EL++  N I    +    S L++    L  LD+ +N I +     
Sbjct: 117 NFP-IGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQSIYCTD 168

Query: 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436
             V   +      L   L +N +       I     +   +  + L  N + S       
Sbjct: 169 LRVLHQMPLLNLSLD--LSLNPM-----NFIQPGAFKEIRLKELALDTNQLKSVPDGI-- 219

Query: 437 RVLKDNSVITSLDLAYNP 454
                 + +  + L  NP
Sbjct: 220 --FDRLTSLQKIWLHTNP 235

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAE 381
             L G ++L EL++       + ++ L        G+L  L I  + +   A  AFH   
Sbjct: 25  HHLPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--- 77

Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
                  L  +NL  N +     E ++    Q  ++  + L GN +H
Sbjct: 78  ---FTPRLSRLNLSFNAL-----ESLSWKTVQGLSLQELVLSGNPLH 116

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 62/406 (15%), Positives = 123/406 (30%), Gaps = 66/406 (16%)

Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCL-CDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
             V + N  L+ L+LS N +       + C   V    ++ L LS               
Sbjct: 62  ISVFKFNQELEYLDLSHNKL-----VKISCHPTV---NLKHLDLSFNAFDALPICKEFGN 113

Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
           +     L+ L L+   ++ S    +  A L  S +  L L   YG       L       
Sbjct: 114 MSQ---LKFLGLSTTHLEKSSVLPI--AHLNISKV-LLVLGETYGEKEDPEGL------- 160

Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
           +      LH     ++    ++         L + +I       K ++ ++   K   + 
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 390 LWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVIT 446
              NL +N  +       +I   L  + T+    +    +  +           +   ++
Sbjct: 221 KLSNLTLNNIETTWNSFIRI-LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR-------YNN 499
              +  +  G       S + +   N+N                    +         NN
Sbjct: 280 IHQVVSDVFGFP----QSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNN 334

Query: 500 TIS--------------ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545
            ++               L L+ N L++     +A+    +   L  +D++ N +  D  
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKE--LSKIAEMTTQMKS-LQQLDISQNSVSYDEK 391

Query: 546 FAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSL 591
                        ++ SLN+++N LT         F  L  +IK L
Sbjct: 392 KGDCSWT-----KSLLSLNMSSNILT------DTIFRCLPPRIKVL 426

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 39/200 (19%)

Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
           SN+ +K   +SG  +           +        L  S+  L D   +    L +    
Sbjct: 300 SNMNIKNFTVSGTRMVHMLC---PSKISP---FLHLDFSNNLLTDTVFENCGHLTE---- 349

Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           L  L L  N +     + +AE   +  +++ L ++ N   ++  +         KSL  L
Sbjct: 350 LETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQN---SVSYDEKKGDCSWTKSLLSL 404

Query: 336 HLHGNSIGDEGIRALMSGLSS----------------RKGKLAVLDIGNNSISA--KGAF 377
           ++  N + D   R L   +                  +   L  L++ +N + +   G F
Sbjct: 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464

Query: 378 HVAEYIKNCKSLLWINLYMN 397
                     SL  I L+ N
Sbjct: 465 ------DRLTSLQKIWLHTN 478

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 56/210 (26%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
              LN+  + +       L D L  +  +  L +   +L       +  L      LR L
Sbjct: 42  NAVLNVGESGLTT-----LPDCLPAH--ITTLVIPDNNLTS-----LPALPPE---LRTL 86

Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
           E++ N +     TSL         +        +  AL              L +L + G
Sbjct: 87  EVSGNQL-----TSLPVLPPGLLELSIFSNPLTHLPAL-----------PSGLCKLWIFG 130

Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
           N +         + L      L  L + +N ++      +         L     Y N +
Sbjct: 131 NQL---------TSLPVLPPGLQELSVSDNQLA-----SLPALPSELCKL---WAYNNQL 173

Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHS 429
                  +         +  + +  N + S
Sbjct: 174 -----TSLPMLPSG---LQELSVSDNQLAS 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 33/190 (17%)

Query: 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENS 302
           +    L LS  +L    A+     L N   L  L L++N    I    F  +        
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLNFISSEAFVPV-------P 88

Query: 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
            +R L L+ N+   L            ++L  L L+ N      I  +         +L 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLF----SDLQALEVLLLYNNH-----IVVVDRNAFEDMAQLQ 139

Query: 363 VLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIG--DEGAEKIADALKQNRTIT 418
            L +  N IS            +     L+ ++L  N +        +   A  +N    
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLKKLPLTDLQKLPAWVKN---- 192

Query: 419 TIDLGGNNIH 428
            + L  N + 
Sbjct: 193 GLYLHNNPLE 202

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 41/204 (20%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVD 257
           N +++   KAF  + +    L+ L L+ N +     G+      L          L ++ 
Sbjct: 47  NKLSSLPSKAFHRLTK----LRLLYLNDNKLQTLPAGI---FKELK--------NLETLW 91

Query: 258 LRDEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGG 315
           + D   +A+   +      L  L L+ N +      SL   + ++ T +  L L  N   
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ 146

Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-- 373
           +L      K L    SL+EL L+ N      ++ +  G   +  +L  L + NN +    
Sbjct: 147 SLPKGVFDK-L---TSLKELRLYNNQ-----LKRVPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 374 KGAFHVAEYIKNCKSLLWINLYMN 397
           +GAF       + + L  + L  N
Sbjct: 198 EGAF------DSLEKLKMLQLQEN 215

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	600
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	100.0
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	100.0
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.78
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.75
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.64
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.57
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.49
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.47
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.41
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.35
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.29
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.28
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.26
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.2
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.1
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.97
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.91
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.88
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.88
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.87
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.62
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.48
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.11
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.1
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.83
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	90.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	84.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.56

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=6e-45  Score=387.45  Aligned_cols=432  Identities=18%  Similarity=0.242  Sum_probs=275.0

Q ss_pred             HHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCCh
Q 007526          154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGD  232 (600)
Q Consensus       154 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~  232 (600)
                      ...++..+++|++|+|++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.+++
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence            44445566667777777777766666666666666677777777777666666655555443322 57777777777766


Q ss_pred             HHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhc-CCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccC
Q 007526          233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG  311 (600)
Q Consensus       233 ~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~  311 (600)
                      .+...++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|++++
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence            6666666666666677777777777666666666555432 346777777777776666666666666667777777777


Q ss_pred             CCCChHHHHHHHHHhh-cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH-hCCCC
Q 007526          312 NYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSL  389 (600)
Q Consensus       312 n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L  389 (600)
                      |.+++.+...++..+. ..++|++|++++|.+++.++..+...+. ..++|++|++++|.+++.+...+...+. .+++|
T Consensus       180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L  258 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSRL  258 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCc
Confidence            7666666655555544 2446777777777766666555555554 2336777777777666666555554443 35667


Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCChhHHHHHHHHHh
Q 007526          390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLK  468 (600)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~  468 (600)
                      ++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...+...+.
T Consensus       259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  338 (461)
T 1z7x_W          259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA  338 (461)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH
T ss_pred             eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh
Confidence            77777777777666666666666666777777777777666666666655544 46777777777776666666666666


Q ss_pred             hCCCccEEeccCcCCChhHHHHHHHHHhh-CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526          469 FHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA  547 (600)
Q Consensus       469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~  547 (600)
                      .+++|++|++++|.+++.++..+.+.+.. +++|++|++++|.+++.+...+...+.. +++|++|++++|+|++.+...
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~~  417 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGILQ  417 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHHH
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHHH
Confidence            66777777777777766666666665543 5567777777777776666666555543 266777777777777666666


Q ss_pred             HHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHh
Q 007526          548 IAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQI  588 (600)
Q Consensus       548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l  588 (600)
                      +...+.... ..++.|++.++.+.....+.+..+.+..+.+
T Consensus       418 l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l  457 (461)
T 1z7x_W          418 LVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEKDKPSL  457 (461)
T ss_dssp             HHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHHHCTTS
T ss_pred             HHHHhccCC-cchhheeecccccCHHHHHHHHHHhccCCCc
Confidence            666554322 1366677666666665555555544444433

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=2.9e-43  Score=374.50  Aligned_cols=415  Identities=26%  Similarity=0.367  Sum_probs=375.6

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD  240 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  240 (600)
                      .+++++|+|+++.+++.....+   +..+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHH---HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CccceehhhhhcccCchhHHHH---HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            3578999999999998775443   4446899999999999999999999999999999999999999999988877777


Q ss_pred             HHhhCC-CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHH
Q 007526          241 ILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALG  318 (600)
Q Consensus       241 ~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~  318 (600)
                      .+.... +|++|++++|++++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  158 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  158 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence            655433 799999999999999888999999999999999999999998888888877654 678999999999999999


Q ss_pred             HHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526          319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND  398 (600)
Q Consensus       319 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  398 (600)
                      ...++..+..+++|++|++++|.+++.++..+...+....++|++|++++|.+++.++..++..+..+++|++|++++|.
T Consensus       159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            99999999999999999999999999999888888876677999999999999999988899999999999999999999


Q ss_pred             CChHHHHHHHHHhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEE
Q 007526          399 IGDEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTL  476 (600)
Q Consensus       399 l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L  476 (600)
                      +++.+...+...+. .+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+... ++|++|
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  318 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  318 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence            99999888887765 4799999999999999999999999999999999999999999999988888877654 699999


Q ss_pred             eccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCc
Q 007526          477 KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE  556 (600)
Q Consensus       477 ~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~  556 (600)
                      ++++|.+++.+...++..+..+++|++|++++|.+++.++..+.+.+...+++|++|++++|+|++.+...+...+..++
T Consensus       319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999887654579999999999999999999998888888


Q ss_pred             ccceeEEEccCCCCchhHHHHHHH
Q 007526          557 DVAVTSLNLANNFLTKFGQVISLF  580 (600)
Q Consensus       557 ~~~L~~L~l~~n~l~~~~~~~~~~  580 (600)
                      .  |++|++++|++++.+...+..
T Consensus       399 ~--L~~L~l~~N~i~~~~~~~l~~  420 (461)
T 1z7x_W          399 S--LRELDLSNNCLGDAGILQLVE  420 (461)
T ss_dssp             C--CCEEECCSSSCCHHHHHHHHH
T ss_pred             C--ccEEECCCCCCCHHHHHHHHH
Confidence            6  999999999999998877754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=100.00  E-value=1.2e-31  Score=277.83  Aligned_cols=307  Identities=21%  Similarity=0.274  Sum_probs=170.0

Q ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC------hHHHHHHHHHH
Q 007526          197 FAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELL  270 (600)
Q Consensus       197 Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l  270 (600)
                      +..+.+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+.      ..++..++..+
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            344455555566666666666666666666666666655555555555666666666665333      23445555556


Q ss_pred             hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526          271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL  350 (600)
Q Consensus       271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  350 (600)
                      ..+++|++|+|++|.+++.++..++..+..+++|++|+|++|.++..+...++..+..+.        .+        .+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~--------~~--------~~  154 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA--------VN--------KK  154 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH--------HH--------HH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHh--------hh--------hh
Confidence            666666666666666666666666666666666666666666665555555554444330        00        00


Q ss_pred             HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH-HhhcCCCccEEEccCCCCCh
Q 007526          351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~  429 (600)
                      .    ...++|++|++++|.+++.++..+...+..+++|++|++++|.+++.|+..+.. .+..+++|++|+|++|.+++
T Consensus       155 ~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~  230 (386)
T 2ca6_A          155 A----KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH  230 (386)
T ss_dssp             H----HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred             c----ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence            0    000245555555555544444444455555555555555555555555554444 55555555556665555555


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh--CCCccEEeccCcCCChhHHHHHHHHH-hhCCCccEEEc
Q 007526          430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADML-RYNNTISILDL  506 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~~l-~~~~~L~~L~L  506 (600)
                      .+...++..+..+++|++|+|++|.|++.+...++..+..  +++|++|++++|.+++.+...+...+ .++++|++|++
T Consensus       231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence            5555555555555566666666666655555555555543  55566666666666555555555544 33566666666


Q ss_pred             cCCCCChHH--HHHHHHHH
Q 007526          507 RANGLRDEG--AKCLAQSF  523 (600)
Q Consensus       507 s~n~i~~~~--~~~l~~~l  523 (600)
                      ++|.+++.+  ...+...+
T Consensus       311 ~~N~l~~~~~~~~~l~~~l  329 (386)
T 2ca6_A          311 NGNRFSEEDDVVDEIREVF  329 (386)
T ss_dssp             TTSBSCTTSHHHHHHHHHH
T ss_pred             cCCcCCcchhHHHHHHHHh
Confidence            666666554  34444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=100.00  E-value=3e-31  Score=274.92  Aligned_cols=288  Identities=21%  Similarity=0.244  Sum_probs=177.6

Q ss_pred             cCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCC------hHHHHHHHHHH
Q 007526          169 MSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG------DEGVKCLCDIL  242 (600)
Q Consensus       169 Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~------~~~~~~l~~~l  242 (600)
                      +..+.+++.++..+...+..+++|++|+|++|.++..+...++..+..+++|++|+|++|.+.      ..++..++..+
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            344466777777777788888888888888888888888888777778888888888886543      24666777777


Q ss_pred             hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhC---------CCccEEEccCCC
Q 007526          243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN---------STIRSLHLNGNY  313 (600)
Q Consensus       243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~L~~n~  313 (600)
                      ..+++|++|+|++|.++..+...++..+..+++|++|+|++|.+++.+...++..+..+         ++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            78888888888888888877777777788888888888888888777777777766665         666666666666


Q ss_pred             CChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHH-hhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEE
Q 007526          314 GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI  392 (600)
Q Consensus       314 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L  392 (600)
                      ++..+...++..+..+++|++|++++|.+++.++..+.. .+. ..++|+.|+|++|.+++.+...++..+..+++|++|
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            665555555555666666666666666666555544443 222 222444444444444444444444444444444444


Q ss_pred             EccCCCCChHHHHHHHHHhhc--CCCccEEEccCCCCChHHHHHHHHHh-hcCCCcCEEECcCCCCCh
Q 007526          393 NLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVL-KDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       393 ~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~~  457 (600)
                      +|++|.+++.+...++..+..  +++|++|++++|.++..+...++..+ .++++|++|++++|++++
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            444444444444444444422  34444444444444444333333333 223444444444444433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.98  E-value=5.9e-31  Score=288.59  Aligned_cols=391  Identities=16%  Similarity=0.187  Sum_probs=289.2

Q ss_pred             HHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC-CCHHHHHHHHHHHhcCCCccEEEccCCCC
Q 007526          152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI  230 (600)
Q Consensus       152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  230 (600)
                      ..+..+...+++|++|+|++|.+++.....+...+.  .+|++|+|++|. ++..++..   ....+++|++|+|++|.+
T Consensus       102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l~~---~~~~~~~L~~L~L~~~~~  176 (592)
T 3ogk_B          102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGLLS---IVTHCRKIKTLLMEESSF  176 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHHHH---HHHHCTTCSEEECTTCEE
T ss_pred             HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHHHH---HHhhCCCCCEEECccccc
Confidence            455667778999999999999999988777766532  349999999987 66554444   446789999999999988


Q ss_pred             ChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526          231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN  310 (600)
Q Consensus       231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~  310 (600)
                      ++.+...+...+..+++|++|++++|.++......+...+.++++|++|++++|.+.+     ++..+..+++|++|+++
T Consensus       177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred             cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence            7766555667777889999999999998744445677778888999999999998753     55667788999999887


Q ss_pred             CCCCC----------------------hHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526          311 GNYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN  368 (600)
Q Consensus       311 ~n~l~----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  368 (600)
                      +....                      ......++..+..+++|++|++++|.+++.++..+.    ...++|+.|+++ 
T Consensus       252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~----~~~~~L~~L~L~-  326 (592)
T 3ogk_B          252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI----QKCPNLEVLETR-  326 (592)
T ss_dssp             BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH----TTCTTCCEEEEE-
T ss_pred             ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH----HhCcCCCEEecc-
Confidence            43211                      011122334456778899999999998877665443    344589999998 


Q ss_pred             CCCChhhHHHHHHHHHhCCCCcEEEcc-----------CCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          369 NSISAKGAFHVAEYIKNCKSLLWINLY-----------MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR  437 (600)
Q Consensus       369 n~i~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  437 (600)
                      +.+.+.+   +......+++|++|+++           .|.+++.++..+.   ..+++|++|+++.|.+++.+...+..
T Consensus       327 ~~~~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          327 NVIGDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA---QGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             GGGHHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             CccCHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH---hhCccCeEEEeecCCccHHHHHHHHh
Confidence            4555543   34445778999999999           4688887765543   34788999999889999887766655


Q ss_pred             HhhcCCCcCEEECc----CCCCChhHH-HHHHHHHhhCCCccEEeccCcC--CChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526          438 VLKDNSVITSLDLA----YNPIGADGA-KALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRANG  510 (600)
Q Consensus       438 ~l~~~~~L~~L~Ls----~n~i~~~~~-~~l~~~l~~~~~L~~L~l~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  510 (600)
                      .   +++|++|+++    .|.+++... ..+...+..+++|++|++++|.  +++.....+..   .+++|++|++++|.
T Consensus       401 ~---~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          401 Y---LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---YSPNVRWMLLGYVG  474 (592)
T ss_dssp             H---CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH---SCTTCCEEEECSCC
T ss_pred             h---CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH---hCccceEeeccCCC
Confidence            3   5899999996    567776311 1233345668899999998654  77776665543   46899999999999


Q ss_pred             CChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       511 i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      +++.+...+...+    ++|++|++++|.|++.++..+...+   +  .|++|+|++|++++.+...+
T Consensus       475 l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~l---~--~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          475 ESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTKL---P--SLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             SSHHHHHHHHTCC----TTCCEEEEESCCCBHHHHHHHHHHC---S--SCCEEEEESCBCCTTCTTGG
T ss_pred             CCHHHHHHHHhcC----cccCeeeccCCCCcHHHHHHHHHhc---C--ccCeeECcCCcCCHHHHHHH
Confidence            9988766654432    6799999999999887777665433   3  49999999999988776544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.97  E-value=3.9e-30  Score=282.23  Aligned_cols=384  Identities=16%  Similarity=0.192  Sum_probs=267.7

Q ss_pred             HHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccC-CCCHHHHHHHHHHHhcCCCccEEEccCCCC
Q 007526          152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPI  230 (600)
Q Consensus       152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  230 (600)
                      ..+..+...+++|++|+|++|.+++..+..+...   +++|++|++++| .+++.++..+   ...+++|++|++++|.+
T Consensus        95 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i  168 (594)
T 2p1m_B           95 PWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDV  168 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEE
T ss_pred             HHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCcc
Confidence            3455667788999999999999988876665533   689999999999 6776555444   35678899999999887


Q ss_pred             ChHHHHHHHHHHhhCCCcCEEEeecCC--CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEE
Q 007526          231 GDEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLH  308 (600)
Q Consensus       231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  308 (600)
                      ++.+...+......+++|++|++++|.  ++...   +......+++|++|++++|..    ...++..+..+++|++|+
T Consensus       169 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          169 DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             ECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEE
T ss_pred             CCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEcc
Confidence            765554455555567889999999886  55443   444455578899999988832    133666667788888887


Q ss_pred             ccCCC--CChHHHHHHHHHh------------------------hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCccc
Q 007526          309 LNGNY--GGALGANALAKGL------------------------EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA  362 (600)
Q Consensus       309 L~~n~--l~~~~~~~l~~~l------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~  362 (600)
                      ++++.  +.......+...+                        ..+++|++|++++|.+++.++..+..    ..++|+
T Consensus       242 l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~----~~~~L~  317 (594)
T 2p1m_B          242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC----QCPKLQ  317 (594)
T ss_dssp             CSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT----TCTTCC
T ss_pred             cccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh----cCCCcC
Confidence            66553  2222222222222                        24567888888888877765554432    345788


Q ss_pred             EEECcCCCCChhhHHHHHHHHHhCCCCcEEEc---------cCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526          363 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       363 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      .|++++| +++.++   ......+++|++|++         ..+.+++.++..+..   .+++|++|++..|.+++.+..
T Consensus       318 ~L~l~~~-~~~~~l---~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~  390 (594)
T 2p1m_B          318 RLWVLDY-IEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALI  390 (594)
T ss_dssp             EEEEEGG-GHHHHH---HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHH
T ss_pred             EEeCcCc-cCHHHH---HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHH
Confidence            8888887 554433   333456888888888         335778776655543   367888888888888887766


Q ss_pred             HHHHHhhcCCCcCEEECc--C----CCCC----hhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccE
Q 007526          434 AIARVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI  503 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls--~----n~i~----~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~  503 (600)
                      .+..   .+++|++|+++  +    +.++    +.++.   ..+..+++|++|++++ .+++.+...+..   .+++|++
T Consensus       391 ~l~~---~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~  460 (594)
T 2p1m_B          391 TIAR---NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG---AIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEM  460 (594)
T ss_dssp             HHHH---HCTTCCEEEEEESSTTCCCTTTCCCTHHHHH---HHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCE
T ss_pred             HHHh---hCCCcceeEeecccCCCcccccCCchhhHHH---HHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccE
Confidence            5543   35888999888  4    5666    44433   3356778899999977 788877766655   3588999


Q ss_pred             EEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       504 L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      |++++|.+++.++..+...+    ++|++|++++|.+++.+...+...+.     .|++|++++|+++..+...+
T Consensus       461 L~L~~~~i~~~~~~~l~~~~----~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~l~~~~~~~~~~~~l  526 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVLSGC----DSLRKLEIRDCPFGDKALLANASKLE-----TMRSLWMSSCSVSFGACKLL  526 (594)
T ss_dssp             EEEESCCSSHHHHHHHHHHC----TTCCEEEEESCSCCHHHHHHTGGGGG-----GSSEEEEESSCCBHHHHHHH
T ss_pred             eeccCCCCcHHHHHHHHhcC----CCcCEEECcCCCCcHHHHHHHHHhCC-----CCCEEeeeCCCCCHHHHHHH
Confidence            99999999888887775543    67999999999888777665543322     38999999998877666544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.97  E-value=1.9e-30  Score=266.28  Aligned_cols=275  Identities=17%  Similarity=0.236  Sum_probs=136.9

Q ss_pred             cCEEEeecCCCChHHHHHHHHHHhcCC-CccEEeecCCCCChhhHHHHHHHHhhC-CCccEEEccCCCCChHHHHHHHHH
Q 007526          248 VERLQLSSVDLRDEGAKAIAELLKNNS-ILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      |++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.+...+...+... ++|++|++++|.++..+...+...
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            444444444444444433444444444 444444444444444444444433333 444444444444444444444444


Q ss_pred             hhcC-CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCC-CCcEEEccCCCCChHH
Q 007526          326 LEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEG  403 (600)
Q Consensus       326 l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~  403 (600)
                      +..+ ++|++|++++|.+++.+...+...+.....+|++|++++|.+++.+...++..+...+ +|++|+|++|.+++.+
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~  183 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN  183 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence            4444 4455555555555444444444433321224555555555555544444555555444 5555555555555555


Q ss_pred             HHHHHHHhhcC-CCccEEEccCCCCChHHHHHHHHHhhc-CCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526          404 AEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC  481 (600)
Q Consensus       404 ~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  481 (600)
                      ...+...+..+ ++|++|++++|.|++.+...++..+.. +++|++|+|++|.|++.+...+...+..+++|++|++++|
T Consensus       184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            54555555544 255555555555555555555555544 2356666666666655555555555555556666666666


Q ss_pred             C---CChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          482 Q---IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS  522 (600)
Q Consensus       482 ~---i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  522 (600)
                      .   +++.....+...+..+++|++||+++|.+.+..+..+...
T Consensus       264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~  307 (362)
T 3goz_A          264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL  307 (362)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred             CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence            5   4444444555555555666666666666665544444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.97  E-value=4.5e-30  Score=263.49  Aligned_cols=288  Identities=19%  Similarity=0.220  Sum_probs=148.8

Q ss_pred             EEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCC-CccEEEccCCCCChHHHHHHHHHHhhC
Q 007526          167 VDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIGDEGVKCLCDILVDN  245 (600)
Q Consensus       167 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~  245 (600)
                      .+++.+.+...    ++..+...++|++|+|++|.+++.+...+...+..++ +|++|+|++|.+++.+...+...+...
T Consensus         3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            44555555432    3333444445666666666666555555555555555 566666666666655555555555554


Q ss_pred             -CCcCEEEeecCCCChHHHHHHHHHHhcC-CCccEEeecCCCCChhhHHHHHHHHhh-CCCccEEEccCCCCChHHHHHH
Q 007526          246 -AGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       246 -~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                       ++|++|+|++|.+++.+...+...+..+ ++|++|++++|.+++.+...+...+.. +++|++|++++|.+++.+...+
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             5566666666666555555555555555 556666666666655555555554444 2355555555555555555555


Q ss_pred             HHHhhcCC-CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhC-CCCcEEEccCCCCC
Q 007526          323 AKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIG  400 (600)
Q Consensus       323 ~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~  400 (600)
                      +..+...+ +|++|++++|.+++.+...+...+....++|++|++++|.+++.+...++..+... ++|++|+|++|.++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            55444443 55555555555554444444444432222455555555555554444444444442 24555555555555


Q ss_pred             hHHHHHHHHHhhcCCCccEEEccCCC---CChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          401 DEGAEKIADALKQNRTITTIDLGGNN---IHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       401 ~~~~~~l~~~l~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      +.+...+...+..+++|++|++++|.   ++..+...+...+..+++|++||+++|++.+.
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            44444444444444445555555444   44444444444444444444444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2e-29  Score=276.50  Aligned_cols=407  Identities=14%  Similarity=0.176  Sum_probs=297.9

Q ss_pred             HHHHHhCCCccEEEcCCCCC-----------CHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEE
Q 007526          155 NEFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL  223 (600)
Q Consensus       155 ~~~~~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L  223 (600)
                      ..++..+++|++|+|+++..           .......+......+++|++|+|++|.+++.....+...+.  .+|++|
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L  143 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETL  143 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEE
Confidence            35677899999999987522           11111123344446899999999999999888887776532  249999


Q ss_pred             EccCCC-CChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCC
Q 007526          224 NLSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS  302 (600)
Q Consensus       224 ~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  302 (600)
                      +|++|. ++..+   +......+++|++|+|++|.+++.+...+......+++|++|++++|.+++.....+...+..++
T Consensus       144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~  220 (592)
T 3ogk_B          144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR  220 (592)
T ss_dssp             EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred             ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence            999986 55544   34444568999999999999877665567777778899999999999987555566777777899


Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC----------------------chHHHHHHHhhhcCCCc
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG----------------------DEGIRALMSGLSSRKGK  360 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~----------------------~~~~~~l~~~l~~~~~~  360 (600)
                      +|++|++++|.+...     +..+..+++|++|+++.....                      ......+...+ ...++
T Consensus       221 ~L~~L~L~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~  294 (592)
T 3ogk_B          221 SLVSVKVGDFEILEL-----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF-PFAAQ  294 (592)
T ss_dssp             TCCEEECSSCBGGGG-----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG-GGGGG
T ss_pred             CCcEEeccCccHHHH-----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHH-hhcCC
Confidence            999999999987653     345667888888888742111                      00000111111 23458


Q ss_pred             ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEcc-----------CCCCCh
Q 007526          361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNNIHS  429 (600)
Q Consensus       361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l~~  429 (600)
                      |++|++++|.+++.+.   ...+..+++|++|+++ +.+.+.++..+.   ..+++|++|+++           .+.+++
T Consensus       295 L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L~~g~~~~~~~~~~~~~~~  367 (592)
T 3ogk_B          295 IRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRIERGADEQGMEDEEGLVSQ  367 (592)
T ss_dssp             CCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred             CcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEeecCccccccccccCccCH
Confidence            9999999999887643   3456889999999999 667776655443   457899999999           368888


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc----CcCCChhHHH-HHHHHHhhCCCccEE
Q 007526          430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGAE-FVADMLRYNNTISIL  504 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~----~n~i~~~~~~-~l~~~l~~~~~L~~L  504 (600)
                      .+...+.   ..+++|++|+++.|.+++.+...+.   ..+++|++|+++    .+.+++.... .+...+..+++|++|
T Consensus       368 ~~~~~l~---~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L  441 (592)
T 3ogk_B          368 RGLIALA---QGCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF  441 (592)
T ss_dssp             HHHHHHH---HHCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHH---hhCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence            7766554   3479999999999999988766654   357899999997    5577764211 244446668999999


Q ss_pred             EccCC--CCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHH
Q 007526          505 DLRAN--GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFS  582 (600)
Q Consensus       505 ~Ls~n--~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  582 (600)
                      ++++|  .+++.+...+...+    ++|++|++++|++++.+...+..   .++  +|++|+|++|++++.+...+.   
T Consensus       442 ~L~~~~~~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~---~~~--~L~~L~l~~n~l~~~~~~~~~---  509 (592)
T 3ogk_B          442 AFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR---GCP--NLQKLEMRGCCFSERAIAAAV---  509 (592)
T ss_dssp             EEECCGGGCCHHHHHHHHHSC----TTCCEEEECSCCSSHHHHHHHHT---CCT--TCCEEEEESCCCBHHHHHHHH---
T ss_pred             EEecCCCCccHHHHHHHHHhC----ccceEeeccCCCCCHHHHHHHHh---cCc--ccCeeeccCCCCcHHHHHHHH---
Confidence            99865  49999888777643    77999999999999877766543   333  499999999998776655443   


Q ss_pred             HHHHHhhhhhHhhhh
Q 007526          583 FLLHQIKSLFHSWCI  597 (600)
Q Consensus       583 ~l~~~l~~l~~~~c~  597 (600)
                      ...+.++.|++++|.
T Consensus       510 ~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHCSSCCEEEEESCB
T ss_pred             HhcCccCeeECcCCc
Confidence            234678888888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.96  E-value=1.7e-27  Score=261.22  Aligned_cols=373  Identities=15%  Similarity=0.193  Sum_probs=256.0

Q ss_pred             HHHHHHHhCCCccEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC--
Q 007526          153 TLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP--  229 (600)
Q Consensus       153 ~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--  229 (600)
                      .+..+.+.+++|++|+|++| .+++.++..+   +..+++|++|++++|.+++.+...+......+++|++|++++|.  
T Consensus       121 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  197 (594)
T 2p1m_B          121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE  197 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSC
T ss_pred             HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCc
Confidence            34444445777888888777 5565554333   33467777777777776554444444444456677777777765  


Q ss_pred             CChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC--CChhhHHH--------------
Q 007526          230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTS--------------  293 (600)
Q Consensus       230 l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~--------------  293 (600)
                      ++...+   ...+..+++|++|++++|.- .   ..+...+..+++|++|+++++.  +....+..              
T Consensus       198 ~~~~~l---~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L  270 (594)
T 2p1m_B          198 VSFSAL---ERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL  270 (594)
T ss_dssp             CCHHHH---HHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred             CCHHHH---HHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence            444433   33334467777777777621 1   1144555556666666655442  22222222              


Q ss_pred             ----------HHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccE
Q 007526          294 ----------LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV  363 (600)
Q Consensus       294 ----------l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~  363 (600)
                                ++..+..+++|++|++++|.+++.+.   ...+..+++|++|++++| +++.++..+...+    ++|++
T Consensus       271 s~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l---~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~----~~L~~  342 (594)
T 2p1m_B          271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL---VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC----KDLRE  342 (594)
T ss_dssp             ECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH---HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC----TTCCE
T ss_pred             cCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH---HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC----CCCCE
Confidence                      22223356889999999999876554   344668899999999998 7666666665433    48999


Q ss_pred             EEC---------cCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEcc--C----CCCC
Q 007526          364 LDI---------GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG--G----NNIH  428 (600)
Q Consensus       364 L~L---------s~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~----n~l~  428 (600)
                      |++         ..+.+++.+...+   ...+++|++|+++.|.+++.+...+..   .+++|++|+++  +    +.++
T Consensus       343 L~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          343 LRVFPSEPFVMEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             EEEECSCTTCSSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTT
T ss_pred             EEEecCcccccccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCccccc
Confidence            999         4457887765544   356899999999999999987665543   36899999999  4    5777


Q ss_pred             ----hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEE
Q 007526          429 ----SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL  504 (600)
Q Consensus       429 ----~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L  504 (600)
                          +.+..   ..+..+++|++|++++ .+++.++..+..   .+++|++|++++|.+++.+...+..   .+++|++|
T Consensus       417 ~~~~~~~~~---~l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~---~~~~L~~L  486 (594)
T 2p1m_B          417 LEPLDIGFG---AIVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS---GCDSLRKL  486 (594)
T ss_dssp             CCCTHHHHH---HHHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH---HCTTCCEE
T ss_pred             CCchhhHHH---HHHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh---cCCCcCEE
Confidence                44543   4456689999999988 788887776654   4789999999999999887776644   47999999


Q ss_pred             EccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526          505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN  568 (600)
Q Consensus       505 ~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n  568 (600)
                      ++++|.+++.++..+...+    ++|++|++++|++++.+...+...+   +.  ++...+..+
T Consensus       487 ~L~~n~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~l~~~l---p~--l~i~~~~~~  541 (594)
T 2p1m_B          487 EIRDCPFGDKALLANASKL----ETMRSLWMSSCSVSFGACKLLGQKM---PK--LNVEVIDER  541 (594)
T ss_dssp             EEESCSCCHHHHHHTGGGG----GGSSEEEEESSCCBHHHHHHHHHHC---TT--EEEEEECSS
T ss_pred             ECcCCCCcHHHHHHHHHhC----CCCCEEeeeCCCCCHHHHHHHHHhC---CC--CEEEEecCC
Confidence            9999999988876655433    7899999999999888887765433   33  544444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3.3e-29  Score=255.76  Aligned_cols=305  Identities=22%  Similarity=0.244  Sum_probs=174.6

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .++++++|+++++.+.+.      +.+..+++|++|++++|.++....      +..+++|++|++++|.+++.      
T Consensus        42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------  103 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------  103 (347)
T ss_dssp             HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred             hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence            567888888888887652      236667888888888888764321      56677888888888877653      


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      ..+..+++|++|++++|.++....      +..+++|++|++++|.....     ...+..+++|++|++++|.+.....
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred             hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence            235566778888887777766321      45567777777777743211     1124456677777777766654332


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI  399 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  399 (600)
                            +..+++|++|++++|.+.+...      + ...++|+.|++++|.++..     .. +..+++|++|++++|.+
T Consensus       173 ------~~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          173 ------IANLTDLYSLSLNYNQIEDISP------L-ASLTSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             ------GGGCTTCSEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred             ------hccCCCCCEEEccCCccccccc------c-cCCCccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCcc
Confidence                  4456666666666666654321      1 2233566666666666552     11 45566666666666665


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                      ++..     . +..+++|++|++++|.+++.      ..+..+++|++|++++|.+++.      ..+..+++|++|+++
T Consensus       234 ~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          234 TDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             CCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred             CCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence            5521     1 44556666666666655542      2244445666666666655543      123445555555555


Q ss_pred             CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      +|.+++..+..+.    .+++|++|++++|.+++..+  +...     ++|++|++++|.|+
T Consensus       296 ~n~l~~~~~~~l~----~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          296 NNQLGNEDMEVIG----GLTNLTTLFLSQNHITDIRP--LASL-----SKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCGGGHHHHH----TCTTCSEEECCSSSCCCCGG--GGGC-----TTCSEESSSCC---
T ss_pred             CCcCCCcChhHhh----ccccCCEEEccCCccccccC--hhhh-----hccceeehhhhccc
Confidence            5555554443332    23555555555555554322  1111     45555555555543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=1.1e-32  Score=310.61  Aligned_cols=259  Identities=23%  Similarity=0.266  Sum_probs=177.4

Q ss_pred             CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526          274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG  353 (600)
Q Consensus       274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  353 (600)
                      ++|++|++++|.+++    .++..+..+++|++|++++|.++...    +..+..+++|++|++++|.+.+...    ..
T Consensus       394 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p----~~  461 (768)
T 3rgz_A          394 NTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNMLEGEIP----QE  461 (768)
T ss_dssp             CCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCC----CGGGGGCTTCCEEECCSSCCCSCCC----GG
T ss_pred             CCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcc----cHHHhcCCCCCEEECCCCcccCcCC----HH
Confidence            456666666666542    23445667778888888887765322    2345677888888888887765322    22


Q ss_pred             hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526          354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      + ...++|++|++++|.++..    ++..+..+++|++|++++|.+.+.    ++..+..+++|++|++++|.++..   
T Consensus       462 ~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~---  529 (768)
T 3rgz_A          462 L-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN---  529 (768)
T ss_dssp             G-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred             H-cCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc---
Confidence            2 2334788888888888754    566677888888888888888754    555677788888888888888753   


Q ss_pred             HHHHHhhcCCCcCEEECcCCCCChhHHHHHHH------------------------------------------------
Q 007526          434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE------------------------------------------------  465 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------------------------------------------------  465 (600)
                       ++..+..+++|++|++++|++...-...+..                                                
T Consensus       530 -~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  608 (768)
T 3rgz_A          530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS  608 (768)
T ss_dssp             -CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred             -CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence             3445666788888888888664221111100                                                


Q ss_pred             ------------------HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcC
Q 007526          466 ------------------VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN  527 (600)
Q Consensus       466 ------------------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n  527 (600)
                                        .+..+++|++|++++|++++..+..    +..++.|+.|+|++|.+++..+..+...     
T Consensus       609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-----  679 (768)
T 3rgz_A          609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE----IGSMPYLFILNLGHNDISGSIPDEVGDL-----  679 (768)
T ss_dssp             GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred             cccccccccceecccCchhhhccccccEEECcCCcccccCCHH----HhccccCCEEeCcCCccCCCCChHHhCC-----
Confidence                              1123467888889888887664433    4556889999999998887656556554     


Q ss_pred             ccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          528 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       528 ~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      ++|++|||++|++++..+..+..+..      |++|||++|+++.
T Consensus       680 ~~L~~LdLs~N~l~g~ip~~l~~l~~------L~~L~ls~N~l~g  718 (768)
T 3rgz_A          680 RGLNILDLSSNKLDGRIPQAMSALTM------LTEIDLSNNNLSG  718 (768)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCCC------CSEEECCSSEEEE
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCC------CCEEECcCCcccc
Confidence            77999999999988877766654433      8899999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.9e-28  Score=250.06  Aligned_cols=305  Identities=23%  Similarity=0.264  Sum_probs=245.1

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      +++|++|++++|.++...      .+..+++|++|++++|.+++..     . +..+++|++|++++|.++..      .
T Consensus        43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~-----~-~~~l~~L~~L~L~~n~i~~~------~  104 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDIS-----P-LSNLVKLTNLYIGTNKITDI------S  104 (347)
T ss_dssp             HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCC------G
T ss_pred             cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccch-----h-hhcCCcCCEEEccCCcccCc------h
Confidence            489999999999987531      2567899999999999998742     2 66789999999999999874      2


Q ss_pred             HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHH
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR  348 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  348 (600)
                      .+..+++|++|++++|.+++...      +..+++|++|++++|......     ..+..+++|++|++++|.+.+... 
T Consensus       105 ~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~-  172 (347)
T 4fmz_A          105 ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP-  172 (347)
T ss_dssp             GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh-
Confidence            36678999999999999976321      668999999999999533211     236789999999999999876432 


Q ss_pred             HHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526          349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH  428 (600)
Q Consensus       349 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  428 (600)
                           + ...++|+.|++++|.+...     +. +..+++|++|++++|.+.+..     . +..+++|++|++++|.++
T Consensus       173 -----~-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          173 -----I-ANLTDLYSLSLNYNQIEDI-----SP-LASLTSLHYFTAYVNQITDIT-----P-VANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             -----G-GGCTTCSEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCC
T ss_pred             -----h-ccCCCCCEEEccCCccccc-----cc-ccCCCccceeecccCCCCCCc-----h-hhcCCcCCEEEccCCccC
Confidence                 2 3455899999999999873     22 778999999999999998742     1 677899999999999998


Q ss_pred             hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC
Q 007526          429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA  508 (600)
Q Consensus       429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  508 (600)
                      ....      +..+++|++|++++|.+++.      ..+..+++|++|++++|.+++.      ..+..+++|++|++++
T Consensus       235 ~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~  296 (347)
T 4fmz_A          235 DLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNN  296 (347)
T ss_dssp             CCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCS
T ss_pred             CCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcC
Confidence            7532      66779999999999999874      3457789999999999999886      2356789999999999


Q ss_pred             CCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       509 n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      |.+++..+..+...     ++|++|++++|++++..+  +.    ..+  .|++|++++|+|++
T Consensus       297 n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~--~~----~l~--~L~~L~l~~N~i~~  347 (347)
T 4fmz_A          297 NQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRP--LA----SLS--KMDSADFANQVIKK  347 (347)
T ss_dssp             SCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGG--GG----GCT--TCSEESSSCC----
T ss_pred             CcCCCcChhHhhcc-----ccCCEEEccCCccccccC--hh----hhh--ccceeehhhhcccC
Confidence            99999888777665     889999999999997655  22    233  39999999998763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5.6e-33  Score=312.96  Aligned_cols=385  Identities=20%  Similarity=0.174  Sum_probs=238.8

Q ss_pred             HHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhc-CCCccEEEccCCCCCh
Q 007526          154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGD  232 (600)
Q Consensus       154 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~  232 (600)
                      +...+..+++|++|++++|.+...    ++ . ..+++|++|++++|.++..    ++..+.. +++|++|++++|.++.
T Consensus       239 ~~~~l~~l~~L~~L~Ls~n~l~~~----~~-~-~~l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~  308 (768)
T 3rgz_A          239 FSRAISTCTELKLLNISSNQFVGP----IP-P-LPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYG  308 (768)
T ss_dssp             HHHHTTTCSSCCEEECCSSCCEES----CC-C-CCCTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEE
T ss_pred             ccHHHhcCCCCCEEECCCCcccCc----cC-c-cccCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCC
Confidence            345567889999999999987532    11 1 1456777777777765411    1111222 3566666666666543


Q ss_pred             HHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHH-HHHhcCCCccEEeecCCCCChhhHHHH-----------------
Q 007526          233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLKNNSILRVLELNNNMIDYSGFTSL-----------------  294 (600)
Q Consensus       233 ~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l-----------------  294 (600)
                      .    ++..+..+++|++|++++|.++..    ++ ..+..+++|++|++++|.+++.....+                 
T Consensus       309 ~----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l  380 (768)
T 3rgz_A          309 A----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF  380 (768)
T ss_dssp             C----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred             c----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCc
Confidence            2    334445556666666666655421    11 123444666666666665532110111                 


Q ss_pred             ----HHHHhh--CCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526          295 ----AEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN  368 (600)
Q Consensus       295 ----~~~l~~--~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  368 (600)
                          +..+..  +++|++|++++|.++..    ++..+..+++|++|++++|.+++...    ..+ ...++|+.|++++
T Consensus       381 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l-~~l~~L~~L~L~~  451 (768)
T 3rgz_A          381 SGPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIP----SSL-GSLSKLRDLKLWL  451 (768)
T ss_dssp             EEECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCC----GGG-GGCTTCCEEECCS
T ss_pred             CCCcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCccc----HHH-hcCCCCCEEECCC
Confidence                111111  34566666666654422    22345677788888888887654311    122 2334788888888


Q ss_pred             CCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE
Q 007526          369 NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL  448 (600)
Q Consensus       369 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  448 (600)
                      |.+...    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|++++.    ++..+..+++|++|
T Consensus       452 n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          452 NMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAIL  519 (768)
T ss_dssp             SCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEE
T ss_pred             CcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEE
Confidence            887754    556677888888888888888754    455677788888888888888754    34456667888888


Q ss_pred             ECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHH-----------------------------------
Q 007526          449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD-----------------------------------  493 (600)
Q Consensus       449 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~-----------------------------------  493 (600)
                      +|++|++...    +...+..+++|++|++++|.+++.-+..+..                                   
T Consensus       520 ~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  595 (768)
T 3rgz_A          520 KLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE  595 (768)
T ss_dssp             ECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred             ECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence            8888887644    2234567788999999888765322221111                                   


Q ss_pred             -------------------------------HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          494 -------------------------------MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       494 -------------------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                                                     .+..+++|+.||+++|.+++..+..+..+     +.|+.|||++|++++
T Consensus       596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-----PYLFILNLGHNDISG  670 (768)
T ss_dssp             CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCS
T ss_pred             cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-----ccCCEEeCcCCccCC
Confidence                                           12234678899999998887655555554     789999999999998


Q ss_pred             hHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526          543 DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC  596 (600)
Q Consensus       543 ~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c  596 (600)
                      ..+..+..+..      |+.|||++|+++......+..    ...++.|++++|
T Consensus       671 ~ip~~l~~L~~------L~~LdLs~N~l~g~ip~~l~~----l~~L~~L~ls~N  714 (768)
T 3rgz_A          671 SIPDEVGDLRG------LNILDLSSNKLDGRIPQAMSA----LTMLTEIDLSNN  714 (768)
T ss_dssp             CCCGGGGGCTT------CCEEECCSSCCEECCCGGGGG----CCCCSEEECCSS
T ss_pred             CCChHHhCCCC------CCEEECCCCcccCcCChHHhC----CCCCCEEECcCC
Confidence            88777766544      999999999988654443322    234555666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.1e-31  Score=295.34  Aligned_cols=186  Identities=16%  Similarity=0.232  Sum_probs=108.5

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +|++|++++|.+...    .+..+..+++|++|++++|.+.+..   ....+..+++|++|++++|.++...    +..+
T Consensus       377 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~  445 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSL----KTEAFKECPQLELLDLAFTRLKVKD---AQSPFQNLHLLKVLNLSHSLLDISS----EQLF  445 (606)
T ss_dssp             TCCEEECCSCSCEEE----CTTTTTTCTTCSEEECTTCCEECCT---TCCTTTTCTTCCEEECTTCCCBTTC----TTTT
T ss_pred             CCCEEECCCCcCCcC----CHHHhcCCccCCeEECCCCcCCCcc---cchhhhCcccCCEEECCCCccCCcC----HHHH
Confidence            455555555544432    2233445555555555555544320   0112444566666666666665432    2334


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|++++|.+++.... ....+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+
T Consensus       446 ~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          446 DGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             TTCTTCCEEECTTCBCGGGEEC-SSCGGGGCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             hCCCCCCEEECCCCCCCccccc-cchhhccCCCccEEECCCCccCccChhh----hccccCCCEEECCCCccCcCChhHh
Confidence            4457777777777766542110 0022455677777888777777664433    3445788888888888877665555


Q ss_pred             HHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF  573 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~  573 (600)
                      ...     +.| +|++++|++++..+..+..+..      |+.|++++|++...
T Consensus       521 ~~l-----~~L-~L~L~~N~l~~~~~~~~~~l~~------L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          521 SHL-----KGI-YLNLASNHISIILPSLLPILSQ------QRTINLRQNPLDCT  562 (606)
T ss_dssp             TTC-----CSC-EEECCSSCCCCCCGGGHHHHHT------SSEEECTTCCEECS
T ss_pred             Ccc-----ccc-EEECcCCcccccCHhhcccCCC------CCEEeCCCCCcccc
Confidence            443     667 8888888887666655555544      88888888887753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.5e-28  Score=259.39  Aligned_cols=327  Identities=21%  Similarity=0.232  Sum_probs=252.9

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+.+.     .. +..+++|++|++++|.++...     . +..+++|++|++++|.+++..   
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~L~~n~l~~~~---  128 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDI-----TP-LKNLTKLVDILMNNNQIADIT-----P-LANLTNLTGLTLFNNQITDID---  128 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG---
T ss_pred             hhhhcCCCEEECCCCccCCc-----hh-hhccccCCEEECCCCccccCh-----h-hcCCCCCCEEECCCCCCCCCh---
Confidence            34688899999999988763     22 777899999999999886432     1 567889999999999887642   


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL  317 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  317 (600)
                         .+..+++|++|++++|.++...      .+..+++|++|++++ .+.+.      ..+..+++|++|++++|.++..
T Consensus       129 ---~~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~------~~~~~l~~L~~L~l~~n~l~~~  192 (466)
T 1o6v_A          129 ---PLKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL------KPLANLTTLERLDISSNKVSDI  192 (466)
T ss_dssp             ---GGTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred             ---HHcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc------hhhccCCCCCEEECcCCcCCCC
Confidence               2667899999999999887632      256678999999964 34321      1256789999999999998764


Q ss_pred             HHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526          318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  397 (600)
                      .      .+..+++|++|++++|.+.+...      + ...++|+.|++++|.++..      ..+..+++|++|++++|
T Consensus       193 ~------~l~~l~~L~~L~l~~n~l~~~~~------~-~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          193 S------VLAKLTNLESLIATNNQISDITP------L-GILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN  253 (466)
T ss_dssp             G------GGGGCTTCSEEECCSSCCCCCGG------G-GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred             h------hhccCCCCCEEEecCCccccccc------c-cccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence            3      36688999999999998876432      1 2345899999999998873      24678899999999999


Q ss_pred             CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEe
Q 007526          398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK  477 (600)
Q Consensus       398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~  477 (600)
                      .+.+..     . +..+++|++|++++|.++....      +..+++|++|++++|.+++...      +..+++|++|+
T Consensus       254 ~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~  315 (466)
T 1o6v_A          254 QISNLA-----P-LSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT  315 (466)
T ss_dssp             CCCCCG-----G-GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred             ccccch-----h-hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence            988742     1 6778999999999999987432      5667999999999999876532      56789999999


Q ss_pred             ccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcc
Q 007526          478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED  557 (600)
Q Consensus       478 l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~  557 (600)
                      +++|.+++..+      +..+++|++|++++|.+++.  ..+...     ++|++|++++|++++..+  +.    ..+ 
T Consensus       316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~----~l~-  375 (466)
T 1o6v_A          316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANL-----TNINWLSAGHNQISDLTP--LA----NLT-  375 (466)
T ss_dssp             CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCBCGG--GT----TCT-
T ss_pred             CcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccC-----CCCCEEeCCCCccCccch--hh----cCC-
Confidence            99999987754      45679999999999999875  223332     789999999999987665  22    233 


Q ss_pred             cceeEEEccCCCCchh
Q 007526          558 VAVTSLNLANNFLTKF  573 (600)
Q Consensus       558 ~~L~~L~l~~n~l~~~  573 (600)
                       .|++|++++|+++..
T Consensus       376 -~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          376 -RITQLGLNDQAWTNA  390 (466)
T ss_dssp             -TCCEEECCCEEEECC
T ss_pred             -CCCEEeccCCcccCC
Confidence             399999999988764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1e-28  Score=262.40  Aligned_cols=342  Identities=21%  Similarity=0.223  Sum_probs=268.6

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .++++++|+++++.+...     . .+..+++|++|++++|.++...     . +..+++|++|++++|.+....     
T Consensus        44 ~l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~-----  106 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADIT-----  106 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCG-----
T ss_pred             HhccccEEecCCCCCccC-----c-chhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccCh-----
Confidence            356899999999988762     2 3677899999999999987542     2 678899999999999998742     


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      . +..+++|++|++++|.++....      +..+++|++|++++|.+++..      .+..+++|++|+++++ +.... 
T Consensus       107 ~-~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~~-  171 (466)
T 1o6v_A          107 P-LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDLK-  171 (466)
T ss_dssp             G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCCG-
T ss_pred             h-hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCch-
Confidence            2 6778999999999999987532      667899999999999987532      3668999999999744 33321 


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI  399 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  399 (600)
                           .+..+++|++|++++|.+++..      .+ ...++|++|++++|.+...     .. +..+++|++|++++|.+
T Consensus       172 -----~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l  233 (466)
T 1o6v_A          172 -----PLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDI-----TP-LGILTNLDELSLNGNQL  233 (466)
T ss_dssp             -----GGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred             -----hhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCccccc-----cc-ccccCCCCEEECCCCCc
Confidence                 2668999999999999988642      12 3445899999999999874     22 67899999999999999


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                      .+.      ..+..+++|++|++++|.++....      +..+++|++|++++|.+++...      +..+++|++|+++
T Consensus       234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~  295 (466)
T 1o6v_A          234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN  295 (466)
T ss_dssp             CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred             ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence            874      346778999999999999987432      6677999999999999987532      5678999999999


Q ss_pred             CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccc
Q 007526          480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA  559 (600)
Q Consensus       480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~  559 (600)
                      +|.+++...      +..+++|++|++++|.+++..+  +...     ++|++|++++|++++..  .+    ...+  .
T Consensus       296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~~--~l----~~l~--~  354 (466)
T 1o6v_A          296 ENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSSL-----TKLQRLFFYNNKVSDVS--SL----ANLT--N  354 (466)
T ss_dssp             SSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGGC-----TTCCEEECCSSCCCCCG--GG----TTCT--T
T ss_pred             CCcccCchh------hcCCCCCCEEECcCCcCCCchh--hccC-----ccCCEeECCCCccCCch--hh----ccCC--C
Confidence            999988644      5678999999999999998654  2222     78999999999999752  22    2333  3


Q ss_pred             eeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhhh
Q 007526          560 VTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSWC  596 (600)
Q Consensus       560 L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~c  596 (600)
                      |+.|++++|++++...  +    ...+.++.|++++|
T Consensus       355 L~~L~l~~n~l~~~~~--~----~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP--L----ANLTRITQLGLNDQ  385 (466)
T ss_dssp             CCEEECCSSCCCBCGG--G----TTCTTCCEEECCCE
T ss_pred             CCEEeCCCCccCccch--h----hcCCCCCEEeccCC
Confidence            9999999999987653  2    12345666666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.5e-30  Score=286.10  Aligned_cols=302  Identities=19%  Similarity=0.213  Sum_probs=220.5

Q ss_pred             CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL  326 (600)
Q Consensus       247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  326 (600)
                      +|+.|++++|.++....    ..+..+++|++|++++|.++     .++..+..+++|++|++++|.++....    ..+
T Consensus       255 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~  321 (606)
T 3t6q_A          255 SVESINLQKHYFFNISS----NTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQ----ISA  321 (606)
T ss_dssp             EEEEEECTTCCCSSCCT----TTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGG----GCG
T ss_pred             ceeEEEeecCccCccCH----HHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCch----hhh
Confidence            34555555555544221    22455689999999999985     345566778999999999999886543    346


Q ss_pred             hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526          327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK  406 (600)
Q Consensus       327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  406 (600)
                      ..+++|++|++++|.+...    +........++|++|++++|.++....  .+..+..+++|++|++++|.+.+.    
T Consensus       322 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~----  391 (606)
T 3t6q_A          322 SNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSL----  391 (606)
T ss_dssp             GGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEE----
T ss_pred             hccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcC----
Confidence            6899999999999987632    111111345689999999999987420  134577899999999999998764    


Q ss_pred             HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526          407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS  486 (600)
Q Consensus       407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~  486 (600)
                      .+..+..+++|++|++++|.++....   ...+..+++|++|++++|.++....    ..+..+++|++|++++|.+++.
T Consensus       392 ~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          392 KTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             CTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGG
T ss_pred             CHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCCcc
Confidence            34567778999999999998865321   1235567999999999999876532    3346688999999999998763


Q ss_pred             HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEcc
Q 007526          487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA  566 (600)
Q Consensus       487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~  566 (600)
                      ... ....+..+++|++|++++|.+++..+..+...     ++|++|++++|+|++..+..+..+..      + +|+++
T Consensus       465 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~------L-~L~L~  531 (606)
T 3t6q_A          465 NIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDLSHNRLTSSSIEALSHLKG------I-YLNLA  531 (606)
T ss_dssp             EEC-SSCGGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCGGGGGGGTTCCS------C-EEECC
T ss_pred             ccc-cchhhccCCCccEEECCCCccCccChhhhccc-----cCCCEEECCCCccCcCChhHhCcccc------c-EEECc
Confidence            211 01235667999999999999998765555544     88999999999999887766654322      7 99999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhhhhHhh
Q 007526          567 NNFLTKFGQVISLFFSFLLHQIKSLFHSW  595 (600)
Q Consensus       567 ~n~l~~~~~~~~~~~~~l~~~l~~l~~~~  595 (600)
                      +|+++......+..+    ..++.++++.
T Consensus       532 ~N~l~~~~~~~~~~l----~~L~~L~l~~  556 (606)
T 3t6q_A          532 SNHISIILPSLLPIL----SQQRTINLRQ  556 (606)
T ss_dssp             SSCCCCCCGGGHHHH----HTSSEEECTT
T ss_pred             CCcccccCHhhcccC----CCCCEEeCCC
Confidence            999998776655443    4456665554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=1.3e-31  Score=295.06  Aligned_cols=347  Identities=14%  Similarity=0.152  Sum_probs=180.5

Q ss_pred             HhccCCCccEEEcccCCCCHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCCcC
Q 007526          185 SLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVE  249 (600)
Q Consensus       185 ~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~  249 (600)
                      .+.++++|++|+|++|.++..             ....++..+.  ++++|++|++++|.+...    ++..+.++++|+
T Consensus       201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~  276 (636)
T 4eco_A          201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEMQ  276 (636)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSCC
T ss_pred             HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCCC
Confidence            344555566666666655431             0111333334  555566666655554432    334444455555


Q ss_pred             EEEeecCC-CCh-HHHHHHHHH--HhcCCCccEEeecCCCCChhhHHHHHH--HHhhCCCccEEEccCCCCC-hHH----
Q 007526          250 RLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-ALG----  318 (600)
Q Consensus       250 ~L~Ls~~~-l~~-~~~~~l~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~-~~~----  318 (600)
                      +|++++|+ ++. .....+...  +..+++|++|++++|.++     .++.  .+..+++|++|++++|.++ ..+    
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~  351 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS  351 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence            55555555 554 222222211  112245555555555553     1222  3444555555555555543 111    


Q ss_pred             -------------HHHHHHHhhcCCC-CCEEEccCCCCCchHHHHHHHhhhc-CCCcccEEECcCCCCChhhHHHHHHHH
Q 007526          319 -------------ANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSISAKGAFHVAEYI  383 (600)
Q Consensus       319 -------------~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l  383 (600)
                                   ...++..+..+++ |++|++++|.++.     +...+.. ..++|+.|++++|.++..    ++..+
T Consensus       352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~l  422 (636)
T 4eco_A          352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSV----DGKNF  422 (636)
T ss_dssp             EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTT----TTCSS
T ss_pred             CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCCcCCCc----chhhh
Confidence                         0011223445555 6666666666552     1111111 112566777777766553    33333


Q ss_pred             H-------hCCCCcEEEccCCCCChHHHHHHHH-HhhcCCCccEEEccCCCCChHHHHHHHHH---hhcCCCcCEEECcC
Q 007526          384 K-------NCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARV---LKDNSVITSLDLAY  452 (600)
Q Consensus       384 ~-------~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~L~~L~Ls~  452 (600)
                      .       .+++|++|++++|.++.     ++. .+..+++|++|++++|.++......+...   +.++++|++|+|++
T Consensus       423 ~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~  497 (636)
T 4eco_A          423 DPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF  497 (636)
T ss_dssp             CTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred             cccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence            3       45567777777777664     222 23346777777777777763211111000   01112778888888


Q ss_pred             CCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc------CCCCChHHHHHHHHHHh
Q 007526          453 NPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR------ANGLRDEGAKCLAQSFK  524 (600)
Q Consensus       453 n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls------~n~i~~~~~~~l~~~l~  524 (600)
                      |.++..     ...+.  .+++|++|++++|.++..     ...+..+++|++|+++      +|.+....+..+..+  
T Consensus       498 N~l~~l-----p~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l--  565 (636)
T 4eco_A          498 NKLTKL-----SDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC--  565 (636)
T ss_dssp             SCCCBC-----CGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC--
T ss_pred             CcCCcc-----ChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC--
Confidence            877632     23333  567888888888887752     2234456888888884      455554433334333  


Q ss_pred             hcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          525 VVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       525 ~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                         ++|++|++++|+|+.. +..+.      +  .|++|+|++|++.......+
T Consensus       566 ---~~L~~L~Ls~N~l~~i-p~~~~------~--~L~~L~Ls~N~l~~~~~~~~  607 (636)
T 4eco_A          566 ---PSLTQLQIGSNDIRKV-NEKIT------P--NISVLDIKDNPNISIDLSYV  607 (636)
T ss_dssp             ---SSCCEEECCSSCCCBC-CSCCC------T--TCCEEECCSCTTCEEECTTT
T ss_pred             ---CCCCEEECCCCcCCcc-CHhHh------C--cCCEEECcCCCCccccHHhc
Confidence               7788888888888533 22222      1  38888888888877654433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=5.7e-30  Score=271.44  Aligned_cols=371  Identities=16%  Similarity=0.126  Sum_probs=259.1

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD  240 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  240 (600)
                      .+++++|+|++|.+...    ....+..+++|++|++++|.+...   .-...+..+++|++|+|++|+++..    .+.
T Consensus        29 ~~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~----~~~   97 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQL----ETG   97 (455)
T ss_dssp             CTTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEE----CTT
T ss_pred             CCccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCcc----Chh
Confidence            36799999999999764    245678899999999999986411   0023356788999999999998765    345


Q ss_pred             HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH-HhhCCCccEEEccCCCCChHHH
Q 007526          241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA-LLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      .+..+++|++|++++|+++......  ..+..+++|++|++++|.+++..    +.. +..+++|++|++++|.++....
T Consensus        98 ~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           98 AFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQ----PASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             TTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCC----CCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             hccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccC----cccccCCCCcccEEeCCCCcccccCh
Confidence            5667899999999999998742211  12566799999999999987432    222 5678999999999998876443


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHH----HhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEcc
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALM----SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY  395 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~----~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  395 (600)
                      ..+.. + ...+|+.|++++|.+.+.....+.    ..+ ...++|++|++++|.++......+...+ ..++|+.|+++
T Consensus       172 ~~l~~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~  247 (455)
T 3v47_A          172 EDLLN-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILS  247 (455)
T ss_dssp             TTSGG-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECT
T ss_pred             hhhhc-c-ccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhccc-cccceeeEeec
Confidence            22211 1 126799999999987653221111    111 1234799999999999986433333221 23789999998


Q ss_pred             CCCCChHHHHH--H----HHHhh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526          396 MNDIGDEGAEK--I----ADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       396 ~n~l~~~~~~~--l----~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      +|.+.......  +    ...+.  ..++|++|++++|.++..    ++..+..+++|++|++++|.+++....    .+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~  319 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDN----AF  319 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTT----TT
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChh----Hh
Confidence            88543311000  0    00011  136899999999998875    334466679999999999998865332    34


Q ss_pred             hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526          468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA  547 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~  547 (600)
                      ..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+...     ++|++|++++|+|++.....
T Consensus       320 ~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~  390 (455)
T 3v47_A          320 WGLTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDGI  390 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTTT
T ss_pred             cCcccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHhH
Confidence            56789999999999998775544    4556999999999999988755555544     78999999999998755443


Q ss_pred             HHHHHHhCcccceeEEEccCCCCchhHH
Q 007526          548 IAQALKANEDVAVTSLNLANNFLTKFGQ  575 (600)
Q Consensus       548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~  575 (600)
                      +..+    +  +|++|++++|+++....
T Consensus       391 ~~~l----~--~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          391 FDRL----T--SLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTC----T--TCCEEECCSSCBCCCTT
T ss_pred             hccC----C--cccEEEccCCCcccCCC
Confidence            3322    2  39999999999987543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=3.2e-29  Score=270.36  Aligned_cols=359  Identities=14%  Similarity=0.124  Sum_probs=216.7

Q ss_pred             HHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007526          157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK  236 (600)
Q Consensus       157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  236 (600)
                      .+..+++|++|+|++|.+...    .+..+..+++|++|++++|.++..     +..  .+++|++|++++|+++...  
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~--~l~~L~~L~L~~N~l~~~~--  106 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKI-----SCH--PTVNLKHLDLSFNAFDALP--  106 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEE-----ECC--CCCCCSEEECCSSCCSSCC--
T ss_pred             hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeec-----Ccc--ccCCccEEeccCCcccccc--
Confidence            455677888888888877653    134566777888888888877632     111  5677888888888776421  


Q ss_pred             HHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCc--cEEeecCCCC--Chhh----------------------
Q 007526          237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSG----------------------  290 (600)
Q Consensus       237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~~----------------------  290 (600)
                       ++..+..+++|++|++++|.++...       +..+++|  ++|++++|.+  +...                      
T Consensus       107 -~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          107 -ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             -CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             -chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence             2345566788888888888877621       2334666  8888887766  2111                      


Q ss_pred             ------------------------------HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007526          291 ------------------------------FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN  340 (600)
Q Consensus       291 ------------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  340 (600)
                                                    +......+..+++|+.|++++|.++......+...+. .++|++|++++|
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n  257 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW-HTTVWYFSISNV  257 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH-TSSCSEEEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh-hCcccEEEeecc
Confidence                                          1111112333444444444444444433333332221 235555555555


Q ss_pred             CCCchHHHHHHHhhh----cCCCc--------------------------ccEEECcCCCCChhhHHHHHHHHHhCCCCc
Q 007526          341 SIGDEGIRALMSGLS----SRKGK--------------------------LAVLDIGNNSISAKGAFHVAEYIKNCKSLL  390 (600)
Q Consensus       341 ~l~~~~~~~l~~~l~----~~~~~--------------------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  390 (600)
                      .+++.    +...+.    ...+.                          |+.|++++|.+....      ....+++|+
T Consensus       258 ~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~  327 (520)
T 2z7x_B          258 KLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML------CPSKISPFL  327 (520)
T ss_dssp             EEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC------CCSSCCCCC
T ss_pred             cccCc----cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc------chhhCCccc
Confidence            43321    000000    01112                          333333333332210      014678889


Q ss_pred             EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh-hHHHHHHHHHhh
Q 007526          391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA-DGAKALSEVLKF  469 (600)
Q Consensus       391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~  469 (600)
                      +|++++|.+++.    ++..+..+++|++|++++|+++...  .++..+..+++|++|++++|.+++ ....    .+..
T Consensus       328 ~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----~~~~  397 (520)
T 2z7x_B          328 HLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKELS--KIAEMTTQMKSLQQLDISQNSVSYDEKKG----DCSW  397 (520)
T ss_dssp             EEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBHH--HHHHHHTTCTTCCEEECCSSCCBCCGGGC----SCCC
T ss_pred             EEEeECCccChh----hhhhhccCCCCCEEEccCCccCccc--cchHHHhhCCCCCEEECCCCcCCcccccc----hhcc
Confidence            999999988874    4455677888999999999988632  255667777999999999998875 2211    2345


Q ss_pred             CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHH
Q 007526          470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA  549 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~  549 (600)
                      +++|++|++++|.+++..+..+.      ++|++|++++|.|+..... +...     ++|++|++++|+|+......+.
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~------~~L~~L~Ls~N~l~~ip~~-~~~l-----~~L~~L~L~~N~l~~l~~~~~~  465 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLP------PRIKVLDLHSNKIKSIPKQ-VVKL-----EALQELNVASNQLKSVPDGIFD  465 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCC------TTCCEEECCSSCCCCCCGG-GGGC-----TTCCEEECCSSCCCCCCTTTTT
T ss_pred             CccCCEEECcCCCCCcchhhhhc------ccCCEEECCCCcccccchh-hhcC-----CCCCEEECCCCcCCccCHHHhc
Confidence            67899999999988765433221      6899999999988853221 2222     7899999999999864433232


Q ss_pred             HHHHhCcccceeEEEccCCCCchhHH
Q 007526          550 QALKANEDVAVTSLNLANNFLTKFGQ  575 (600)
Q Consensus       550 ~~~~~~~~~~L~~L~l~~n~l~~~~~  575 (600)
                      .    .+  .|++|++++|++.....
T Consensus       466 ~----l~--~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          466 R----LT--SLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             T----CT--TCCEEECCSSCBCCCHH
T ss_pred             c----CC--cccEEECcCCCCcccCC
Confidence            2    22  39999999999987544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.6e-31  Score=293.91  Aligned_cols=117  Identities=11%  Similarity=0.083  Sum_probs=83.6

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+....    ...+..+++|++|+|++|.++...    +..+..+++|++|++++|.+.....  
T Consensus        52 ~~~l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~--  121 (606)
T 3vq2_A           52 FSNFSELQWLDLSRCEIETIE----DKAWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLES--  121 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSSS--
T ss_pred             ccCCccCcEEeCCCCcccccC----HHHhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCccccccc--
Confidence            456788888888888887531    345677888888999888876432    2345677888999998888765321  


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChh
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS  289 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  289 (600)
                        ..+..+++|++|++++|.++...   ++..+.++++|++|++++|.+++.
T Consensus       122 --~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          122 --FPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             --SCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             --cccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceec
Confidence              23556788999999988876421   334566678899999999888654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.1e-30  Score=292.93  Aligned_cols=341  Identities=15%  Similarity=0.191  Sum_probs=181.3

Q ss_pred             HHHhccCCCccEEEcccCCCCHH-------------HHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhCCC
Q 007526          183 AESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNAG  247 (600)
Q Consensus       183 ~~~l~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~  247 (600)
                      +..+..+++|++|+|++|.++..             .-..++..+.  .+++|++|+|++|.+...    ++..+..+++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCC
Confidence            34466677788888888877641             0012444444  677777888877766543    4455666777


Q ss_pred             cCEEEeecCC-CCh-HHHHHHHHH---HhcCCCccEEeecCCCCChhhHHHHHH--HHhhCCCccEEEccCCCCChHHHH
Q 007526          248 VERLQLSSVD-LRD-EGAKAIAEL---LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGGALGAN  320 (600)
Q Consensus       248 L~~L~Ls~~~-l~~-~~~~~l~~~---l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~  320 (600)
                      |+.|+|++|+ ++. .....+...   +..+++|++|++++|.++     .++.  .+..+++|+.|++++|.++..+  
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-----~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--  589 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-----EFPASASLQKMVKLGLLDCVHNKVRHLE--  589 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-----BCCCHHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-----ccCChhhhhcCCCCCEEECCCCCcccch--
Confidence            7777777776 665 333333332   123447777777777775     2333  5666777777777777766322  


Q ss_pred             HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCc-ccEEECcCCCCChhhHHHHHHHHHhC-------------
Q 007526          321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC-------------  386 (600)
Q Consensus       321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~-------------  386 (600)
                          .+..+++|+.|++++|.++.     +...+. ..++ |+.|++++|.++.     ++..+...             
T Consensus       590 ----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~-~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          590 ----AFGTNVKLTDLKLDYNQIEE-----IPEDFC-AFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             ----CCCTTSEESEEECCSSCCSC-----CCTTSC-EECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred             ----hhcCCCcceEEECcCCcccc-----chHHHh-hccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCC
Confidence                34556666666666666652     112221 2223 6666666665553     33222222             


Q ss_pred             ------------------CCCcEEEccCCCCChHHHHHHHHHh-hcCCCccEEEccCCCCChHHHHHHHHH---hhcCCC
Q 007526          387 ------------------KSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV---LKDNSV  444 (600)
Q Consensus       387 ------------------~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~  444 (600)
                                        ++|++|++++|.++.     ++..+ ..+++|+.|++++|.++......+...   +.++++
T Consensus       655 ~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~  729 (876)
T 4ecn_A          655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL  729 (876)
T ss_dssp             CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGG
T ss_pred             cCCCccccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCC
Confidence                              245555555555443     22222 234556666666655552111000000   011125


Q ss_pred             cCEEECcCCCCChhHHHHHHHHHh--hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC------CCCChHHH
Q 007526          445 ITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEGA  516 (600)
Q Consensus       445 L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~------n~i~~~~~  516 (600)
                      |++|+|++|+|+.     +...+.  .+++|+.|++++|.++..     ...+..+++|+.|+|++      |.+....+
T Consensus       730 L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip  799 (876)
T 4ecn_A          730 LTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWP  799 (876)
T ss_dssp             CCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred             ccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccCh
Confidence            6666666666552     122222  456666666666666542     22234456677776654      44444333


Q ss_pred             HHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          517 KCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       517 ~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      ..+..+     ++|++|+|++|+|+. .+..+.      +  .|+.|||++|++.......+
T Consensus       800 ~~l~~L-----~~L~~L~Ls~N~L~~-Ip~~l~------~--~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          800 TGITTC-----PSLIQLQIGSNDIRK-VDEKLT------P--QLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             TTGGGC-----SSCCEEECCSSCCCB-CCSCCC------S--SSCEEECCSCTTCEEECGGG
T ss_pred             HHHhcC-----CCCCEEECCCCCCCc-cCHhhc------C--CCCEEECCCCCCCccChHHc
Confidence            333332     667777777777742 222221      1  37777777777766554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=1.3e-29  Score=268.67  Aligned_cols=375  Identities=15%  Similarity=0.141  Sum_probs=267.7

Q ss_pred             cEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH-HHHHh
Q 007526          165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL-CDILV  243 (600)
Q Consensus       165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~  243 (600)
                      +.++.+++.++.     ++.   -.++|++|+|++|.++...    ...+..+++|++|++++|.+...    + ...+.
T Consensus        13 ~~~~c~~~~l~~-----lp~---l~~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~----i~~~~~~   76 (455)
T 3v47_A           13 YNAICINRGLHQ-----VPE---LPAHVNYVDLSLNSIAELN----ETSFSRLQDLQFLKVEQQTPGLV----IRNNTFR   76 (455)
T ss_dssp             TEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCCEEC----TTTTSSCTTCCEEECCCCSTTCE----ECTTTTT
T ss_pred             cccCcCCCCccc-----CCC---CCCccCEEEecCCccCcCC----hhHhccCccccEEECcCCcccce----ECccccc
Confidence            356777777665     232   2378999999999987532    33456789999999999987532    1 23456


Q ss_pred             hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH--HhhCCCccEEEccCCCCChHHHHH
Q 007526          244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA--LLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~--l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                      .+++|++|++++|+++...    +..+..+++|++|++++|.+++.    ++..  +..+++|++|++++|.++..... 
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-  147 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLE----TGAFNGLANLEVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDNNIKKIQPA-  147 (455)
T ss_dssp             TCTTCCEEECTTCTTCEEC----TTTTTTCTTCCEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSSBCCSCCCC-
T ss_pred             ccccCCEEeCCCCccCccC----hhhccCcccCCEEeCCCCCCCcc----ccCcccccCcccCCEEECCCCccCccCcc-
Confidence            6799999999999998742    34456679999999999999742    2332  66789999999999998765321 


Q ss_pred             HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH----HHHHHhCCCCcEEEccCC
Q 007526          322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV----AEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l----~~~l~~~~~L~~L~Ls~n  397 (600)
                        ..+..+++|++|++++|.+++.....+.. +  ...+|+.|++++|.+.......+    ...+..+++|++|++++|
T Consensus       148 --~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          148 --SFFLNMRRFHVLDLTFNKVKSICEEDLLN-F--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             --GGGGGCTTCCEEECTTCCBSCCCTTTSGG-G--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS
T ss_pred             --cccCCCCcccEEeCCCCcccccChhhhhc-c--ccccccccccccCcccccchhhccccccccccccceeeeEecCCC
Confidence              12568899999999999987643322211 1  12479999999998876321111    111235578999999999


Q ss_pred             CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHH----------HHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526          398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA----------SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      .+++.....+...+ ..++|+.|++++|.+.....          ..+..  ...++|++|++++|.+++..    ...+
T Consensus       223 ~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----~~~~  295 (455)
T 3v47_A          223 GFKESMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALL----KSVF  295 (455)
T ss_dssp             CCCHHHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEEC----TTTT
T ss_pred             cccccchhhhhccc-cccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEecCccccccc----hhhc
Confidence            99988666665543 34899999999885433110          00000  12368999999999998653    2334


Q ss_pred             hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHH
Q 007526          468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA  547 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~  547 (600)
                      ..+++|++|++++|.+++..+..    +..+++|++|++++|.+++..+..+...     ++|++|++++|+|++..+..
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCEEECCSSCCCEECTTT
T ss_pred             ccCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCc-----ccCCEEECCCCcccccChhh
Confidence            67889999999999998875544    4456999999999999988655555443     88999999999999876655


Q ss_pred             HHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHhh
Q 007526          548 IAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHSW  595 (600)
Q Consensus       548 l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~~  595 (600)
                      +..+.      .|++|++++|+++......+..    .+.++.|++++
T Consensus       367 ~~~l~------~L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~  404 (455)
T 3v47_A          367 FLGLP------NLKELALDTNQLKSVPDGIFDR----LTSLQKIWLHT  404 (455)
T ss_dssp             TTTCT------TCCEEECCSSCCSCCCTTTTTT----CTTCCEEECCS
T ss_pred             ccccc------cccEEECCCCccccCCHhHhcc----CCcccEEEccC
Confidence            54433      3999999999999876654322    24455555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=3.1e-30  Score=284.13  Aligned_cols=344  Identities=15%  Similarity=0.157  Sum_probs=217.3

Q ss_pred             HHhCCCccEEEcCCCCCCHH-------------HHHHHHHHhc--cCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccE
Q 007526          158 AKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKT  222 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~  222 (600)
                      +..+++|++|+|++|.+...             ....++..+.  .+++|++|++++|.+..    .++..+..+++|++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~  277 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQL  277 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCE
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCE
Confidence            44566667777776666541             1111344444  56666666666665432    23334455666666


Q ss_pred             EEccCCC-CCh-HHHHHHHHHHhh------CCCcCEEEeecCCCChHHHHHHHH--HHhcCCCccEEeecCCCCCh-h--
Q 007526          223 LNLSGNP-IGD-EGVKCLCDILVD------NAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDY-S--  289 (600)
Q Consensus       223 L~Ls~n~-l~~-~~~~~l~~~l~~------~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~-~--  289 (600)
                      |++++|+ ++. .    ++..+..      +++|++|++++|+++.     ++.  .+..+++|++|++++|.+++ .  
T Consensus       278 L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ip~  348 (636)
T 4eco_A          278 INVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGKLPA  348 (636)
T ss_dssp             EECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEECCC
T ss_pred             EECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccchhh
Confidence            6666665 554 2    2222222      2556666666665552     222  34444555555555555431 0  


Q ss_pred             ---------------hHHHHHHHHhhCCC-ccEEEccCCCCChHHHHHHHHHhhcC--CCCCEEEccCCCCCchHHHHHH
Q 007526          290 ---------------GFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALM  351 (600)
Q Consensus       290 ---------------~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~l~~~~~~~l~  351 (600)
                                     .+..++..+..+++ |++|++++|.++..+     ..+...  ++|++|++++|.+++.....+.
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-----NIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-----SCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccc-----hhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence                           00133445666777 999999999887432     233333  4899999999998764222121


Q ss_pred             Hh-h-hcCCCcccEEECcCCCCChhhHHHHHH-HHHhCCCCcEEEccCCCCChHHHHHHHHHhhc--------CCCccEE
Q 007526          352 SG-L-SSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTI  420 (600)
Q Consensus       352 ~~-l-~~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L  420 (600)
                      .. . ....++|+.|++++|.++.     ++. .+..+++|++|++++|.++.     ++.....        +++|++|
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~L~~L  493 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYLLTSI  493 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGGCCEE
T ss_pred             ccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCC-----cCHHHhccccccccccCCccEE
Confidence            00 0 0023489999999999986     443 34568999999999999885     3322222        1289999


Q ss_pred             EccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc------CcCCChhHHHHHH
Q 007526          421 DLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG------WCQIGASGAEFVA  492 (600)
Q Consensus       421 ~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~------~n~i~~~~~~~l~  492 (600)
                      ++++|.++.     ++..+.  .+++|++|+|++|+++.     +...+..+++|++|+++      +|.+....+    
T Consensus       494 ~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p----  559 (636)
T 4eco_A          494 DLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP----  559 (636)
T ss_dssp             ECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC----
T ss_pred             ECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccCcccccCh----
Confidence            999999985     444554  77999999999999975     23345678999999995      465655433    


Q ss_pred             HHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHH
Q 007526          493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA  551 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~  551 (600)
                      ..+..+++|++|++++|.++.....     +   .++|++||+++|++.......+...
T Consensus       560 ~~l~~l~~L~~L~Ls~N~l~~ip~~-----~---~~~L~~L~Ls~N~l~~~~~~~~~~~  610 (636)
T 4eco_A          560 EGITLCPSLTQLQIGSNDIRKVNEK-----I---TPNISVLDIKDNPNISIDLSYVCPY  610 (636)
T ss_dssp             TTGGGCSSCCEEECCSSCCCBCCSC-----C---CTTCCEEECCSCTTCEEECTTTHHH
T ss_pred             HHHhcCCCCCEEECCCCcCCccCHh-----H---hCcCCEEECcCCCCccccHHhcchh
Confidence            3455679999999999999764221     1   1689999999998886554434333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=7.3e-29  Score=269.43  Aligned_cols=181  Identities=15%  Similarity=0.140  Sum_probs=101.9

Q ss_pred             cccEEECcCCCCChhhHHHHHHHH-HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYI-KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      +|+.|++++|.+..     ++..+ ..+++|++|++++|.+.+..... ...+..+++|++|++++|.++....  ....
T Consensus       311 ~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~  382 (549)
T 2z81_A          311 KVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEI  382 (549)
T ss_dssp             TCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHH
T ss_pred             cceEEEeccCcccc-----CCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhh
Confidence            34555555555443     33333 45666666666666666542110 1113445666666666666665321  1123


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCC---------------------CccEEeccCcCCChhHHHHHHHHHhh
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHG---------------------NINTLKLGWCQIGASGAEFVADMLRY  497 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~---------------------~L~~L~l~~n~i~~~~~~~l~~~l~~  497 (600)
                      +..+++|++|++++|+++..     ...+..++                     +|++|++++|++++.        ...
T Consensus       383 ~~~l~~L~~L~Ls~N~l~~l-----p~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~--------~~~  449 (549)
T 2z81_A          383 LLTLKNLTSLDISRNTFHPM-----PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--------SLF  449 (549)
T ss_dssp             GGGCTTCCEEECTTCCCCCC-----CSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC--------CCC
T ss_pred             hhcCCCCCEEECCCCCCccC-----ChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh--------ccc
Confidence            44556666666666655421     11122334                     455555555554432        135


Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526          498 NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG  574 (600)
Q Consensus       498 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~  574 (600)
                      +++|++|++++|+|+....  ...     .++|++||+++|+|++..+..+..+.      .|++|++++|++...-
T Consensus       450 l~~L~~L~Ls~N~l~~ip~--~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          450 LPRLQELYISRNKLKTLPD--ASL-----FPVLLVMKISRNQLKSVPDGIFDRLT------SLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CTTCCEEECCSSCCSSCCC--GGG-----CTTCCEEECCSSCCCCCCTTGGGGCT------TCCEEECCSSCBCCCH
T ss_pred             CChhcEEECCCCccCcCCC--ccc-----CccCCEEecCCCccCCcCHHHHhcCc------ccCEEEecCCCccCCC
Confidence            6888888888888875321  111     17799999999988876555444332      3899999999887643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3e-29  Score=270.51  Aligned_cols=359  Identities=16%  Similarity=0.145  Sum_probs=234.5

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      +++++|+|++|.+....    ...+..+++|++|++++|.++...    +..+..+++|++|+|++|+++.     ++..
T Consensus        21 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSHNKLVK-----ISCH   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCSSCCCE-----EECC
T ss_pred             ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCCCceee-----cCcc
Confidence            78999999999987642    356778899999999999987432    3446678999999999999985     2222


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc--cEEEccCCCC--ChH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL  317 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~l--~~~  317 (600)
                        .+++|++|++++|.++...   ++..+..+++|++|++++|.++..       .+..+++|  ++|++++|.+  +..
T Consensus        88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence              5799999999999987621   224456779999999999999753       34456777  9999999877  211


Q ss_pred             H----------------------------------------------------HHHHHHHhhcCCCCCEEEccCCCCCch
Q 007526          318 G----------------------------------------------------ANALAKGLEGNKSLRELHLHGNSIGDE  345 (600)
Q Consensus       318 ~----------------------------------------------------~~~l~~~l~~~~~L~~L~Ls~n~l~~~  345 (600)
                      .                                                    .......+..+++|+.|++++|.+++.
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence            1                                                    111112344555666666666655555


Q ss_pred             HHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHH-----HhCCCCcEEEccCCCCChHHHHHHHHHh---------
Q 007526          346 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI-----KNCKSLLWINLYMNDIGDEGAEKIADAL---------  411 (600)
Q Consensus       346 ~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-----~~~~~L~~L~Ls~n~l~~~~~~~l~~~l---------  411 (600)
                      .+..+.....  .++|++|++++|.+++.    ++..+     ..+++|+.+++++|.+.-. ...+...+         
T Consensus       236 ~~~~~~~~~~--~~~L~~L~l~~n~l~~~----~p~~~~~~~~~~l~~L~~l~l~~n~~~~p-~~~~~~~~~~~~L~~L~  308 (520)
T 2z7x_B          236 SFIRILQLVW--HTTVWYFSISNVKLQGQ----LDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYEIFSNMNIKNFT  308 (520)
T ss_dssp             HHHHHHHHHH--TSSCSEEEEEEEEEESC----CCCCCCCCCSCCCCEEEEEEEEECCCCSC-THHHHHHHHTCCCSEEE
T ss_pred             HHHHHHHHhh--hCcccEEEeecccccCc----cccchhhcccccCceeEeccccccceecc-hhhhhcccccCceeEEE
Confidence            4444443332  12566666666665532    33333     5566666777776655111 01122221         


Q ss_pred             ------------hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526          412 ------------KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       412 ------------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                                  ..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.  ..+...+..+++|++|+++
T Consensus       309 l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             EESSCCCCCCCCSSCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECC
T ss_pred             cCCCccccccchhhCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECC
Confidence                        4567788888888887763    223455668888888888888753  2344556677888888888


Q ss_pred             CcCCCh-hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCccc
Q 007526          480 WCQIGA-SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV  558 (600)
Q Consensus       480 ~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~  558 (600)
                      +|.+++ .+..    .+..+++|++|++++|.+++..+..+       .++|++|++++|+|+. .+..+..    .+  
T Consensus       383 ~N~l~~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l-------~~~L~~L~Ls~N~l~~-ip~~~~~----l~--  444 (520)
T 2z7x_B          383 QNSVSYDEKKG----DCSWTKSLLSLNMSSNILTDTIFRCL-------PPRIKVLDLHSNKIKS-IPKQVVK----LE--  444 (520)
T ss_dssp             SSCCBCCGGGC----SCCCCTTCCEEECCSSCCCGGGGGSC-------CTTCCEEECCSSCCCC-CCGGGGG----CT--
T ss_pred             CCcCCcccccc----hhccCccCCEEECcCCCCCcchhhhh-------cccCCEEECCCCcccc-cchhhhc----CC--
Confidence            888876 3322    23345788888888888876432211       1578888888888873 2222222    22  


Q ss_pred             ceeEEEccCCCCchhHHH
Q 007526          559 AVTSLNLANNFLTKFGQV  576 (600)
Q Consensus       559 ~L~~L~l~~n~l~~~~~~  576 (600)
                      .|++|++++|+++..+..
T Consensus       445 ~L~~L~L~~N~l~~l~~~  462 (520)
T 2z7x_B          445 ALQELNVASNQLKSVPDG  462 (520)
T ss_dssp             TCCEEECCSSCCCCCCTT
T ss_pred             CCCEEECCCCcCCccCHH
Confidence            388889998888876554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=8e-29  Score=277.80  Aligned_cols=349  Identities=15%  Similarity=0.164  Sum_probs=258.0

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC-CCH-HHHHHHHH---HHhcCCCccEEEccCCCCChHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITA-AGIKAFDG---VLQSNIALKTLNLSGNPIGDEG  234 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~-l~~-~~~~~l~~---~l~~~~~L~~L~Ls~n~l~~~~  234 (600)
                      .+++|++|+|++|.+...    ++..+..+++|++|+|++|. ++. .-...+..   .+..+++|++|+|++|.++.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--  562 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE--  562 (876)
T ss_dssp             GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred             cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence            789999999999987543    46678889999999999998 875 22223322   23456699999999999983  


Q ss_pred             HHHHHH--HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCC-ccEEEccC
Q 007526          235 VKCLCD--ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNG  311 (600)
Q Consensus       235 ~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~  311 (600)
                         ++.  .+..+++|+.|+|++|.++.     ++ .+..+++|++|++++|.++     .++..+..+++ |+.|++++
T Consensus       563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          563 ---FPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             ---CCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCS
T ss_pred             ---cCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcC
Confidence               555  67788999999999999984     33 4566799999999999986     34556777888 99999999


Q ss_pred             CCCChHHHHHHHHHhhcC--CCCCEEEccCCCCCchHHHHHHHhhh-cCCCcccEEECcCCCCChhhHHHHHHHH-HhCC
Q 007526          312 NYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAEYI-KNCK  387 (600)
Q Consensus       312 n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~  387 (600)
                      |.++..+     ..+...  ++|+.|++++|.+.+.. ..+...+. ...++|+.|++++|.++.     ++..+ ..++
T Consensus       629 N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~  697 (876)
T 4ecn_A          629 NKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGS  697 (876)
T ss_dssp             SCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTC
T ss_pred             CCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCC
Confidence            9987432     333333  34999999999987531 11110010 122479999999999996     44444 5789


Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhc--------CCCccEEEccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCCh
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTIDLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGA  457 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~  457 (600)
                      +|++|+|++|.++.     ++..+..        +++|++|+|++|+++.     ++..+.  .+++|+.|+|++|.|+.
T Consensus       698 ~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          698 PISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             CCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             CCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence            99999999999884     3333322        2389999999999984     445555  67999999999999975


Q ss_pred             hHHHHHHHHHhhCCCccEEeccC------cCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCcccc
Q 007526          458 DGAKALSEVLKFHGNINTLKLGW------CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT  531 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~  531 (600)
                           +...+..+++|+.|++++      |.+....+    ..+..+++|++|+|++|.++..+.     .+   .++|+
T Consensus       768 -----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip----~~l~~L~~L~~L~Ls~N~L~~Ip~-----~l---~~~L~  830 (876)
T 4ecn_A          768 -----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP----TGITTCPSLIQLQIGSNDIRKVDE-----KL---TPQLY  830 (876)
T ss_dssp             -----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC----TTGGGCSSCCEEECCSSCCCBCCS-----CC---CSSSC
T ss_pred             -----cchhhhcCCCCCEEECCCCCCcccccccccCh----HHHhcCCCCCEEECCCCCCCccCH-----hh---cCCCC
Confidence                 334456789999999977      66655433    345667999999999999965322     12   26899


Q ss_pred             EEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCch
Q 007526          532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK  572 (600)
Q Consensus       532 ~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~  572 (600)
                      .|||++|+|....+..+.....      +..+.|.+|+..+
T Consensus       831 ~LdLs~N~l~~i~~~~~~~~~~------~~~~~L~~n~~~~  865 (876)
T 4ecn_A          831 ILDIADNPNISIDVTSVCPYIE------AGMYVLLYDKTQD  865 (876)
T ss_dssp             EEECCSCTTCEEECGGGHHHHH------TTCCEEECCTTSE
T ss_pred             EEECCCCCCCccChHHcccccc------chheeecCCCccc
Confidence            9999999998766665655555      5556666665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.4e-29  Score=278.46  Aligned_cols=94  Identities=16%  Similarity=0.090  Sum_probs=61.6

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+...    .+..+..+++|++|++++|.++....    ..+..+++|++|++++|.+....   
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~---  144 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLES----FPIGQLITLKKLNVAHNFIHSCK---  144 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSS----SCCTTCTTCCEEECCSSCCCCCC---
T ss_pred             hhchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCccccccc----cccCCCCCCCEEeCCCCccccee---
Confidence            34677788888888877653    13456677788888888887653221    12456677888888887775411   


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHH
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEG  262 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~  262 (600)
                      ++..+..+++|++|++++|+++...
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             chHhHhhcCCCCEEEccCCcceecC
Confidence            3445666777888888887776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.3e-27  Score=259.57  Aligned_cols=318  Identities=14%  Similarity=0.157  Sum_probs=203.7

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+....    ...+..+++|++|++++|.++....    ..+..+++|++|++++|.++..+   
T Consensus        46 ~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~---  114 (549)
T 2z81_A           46 LRACANLQVLILKSSRINTIE----GDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPLSSLKYLNLMGNPYQTLG---  114 (549)
T ss_dssp             TSSCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTSCCCSCCH----HHHTTCTTCCEEECTTCCCSSSC---
T ss_pred             hhcCCcccEEECCCCCcCccC----hhhccccccCCEEECCCCccCccCH----HHhccCCCCcEEECCCCcccccc---
Confidence            456788888888888887531    3456777888888888888765432    23466788888888888876421   


Q ss_pred             HHHHHhhCCCcCEEEeecCC-CChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          238 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA  316 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  316 (600)
                      ++..+..+++|++|++++|. ++....    ..+..+++|++|++++|.++..    ++..+..+++|++|++++|.++.
T Consensus       115 ~~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~  186 (549)
T 2z81_A          115 VTSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAF  186 (549)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSBSTT
T ss_pred             hhhhhhccCCccEEECCCCccccccCH----hhhhcccccCeeeccCCccccc----ChhhhhccccCceEecccCcccc
Confidence            12345567888888888887 443211    2345568888999998888643    24456678889999999888765


Q ss_pred             HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh-----------
Q 007526          317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN-----------  385 (600)
Q Consensus       317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-----------  385 (600)
                      .+..    .+..+++|++|++++|.+++..+...  .+....++|+.|++++|.+++.....+...+..           
T Consensus       187 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          187 LLEI----FADILSSVRYLELRDTNLARFQFSPL--PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             HHHH----HHHSTTTBSEEEEESCBCTTCCCCCC--SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred             cchh----hHhhcccccEEEccCCcccccccccc--chhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence            5432    23468899999999998765210000  011122355566666555555444433333333           


Q ss_pred             ------------------------------------------------CCCCcEEEccCCCCChHHHHHHHHHh-hcCCC
Q 007526          386 ------------------------------------------------CKSLLWINLYMNDIGDEGAEKIADAL-KQNRT  416 (600)
Q Consensus       386 ------------------------------------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~  416 (600)
                                                                      .++|++|++++|.+..     ++..+ ..+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~  335 (549)
T 2z81_A          261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKS  335 (549)
T ss_dssp             CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTT
T ss_pred             ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCcc
Confidence                                                            3455566666665553     22333 35788


Q ss_pred             ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHh
Q 007526          417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR  496 (600)
Q Consensus       417 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~  496 (600)
                      |++|++++|.+++..... ...+..+++|++|++++|.+++...  ....+..+++|++|++++|+++...     ..+.
T Consensus       336 L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~  407 (549)
T 2z81_A          336 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDISRNTFHPMP-----DSCQ  407 (549)
T ss_dssp             CCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECTTCCCCCCC-----SCCC
T ss_pred             ccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECCCCCCccCC-----hhhc
Confidence            888888888888753221 1224556888888888888876421  2234567888889999888887432     2334


Q ss_pred             hCCCccEEEccCCCCCh
Q 007526          497 YNNTISILDLRANGLRD  513 (600)
Q Consensus       497 ~~~~L~~L~Ls~n~i~~  513 (600)
                      .+++|++|++++|.++.
T Consensus       408 ~~~~L~~L~Ls~N~l~~  424 (549)
T 2z81_A          408 WPEKMRFLNLSSTGIRV  424 (549)
T ss_dssp             CCTTCCEEECTTSCCSC
T ss_pred             ccccccEEECCCCCccc
Confidence            45677777777777664

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=2e-28  Score=266.57  Aligned_cols=165  Identities=16%  Similarity=0.188  Sum_probs=116.5

Q ss_pred             HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHH
Q 007526          384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL  463 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  463 (600)
                      ..+++|++|++++|.+++.    ++..+..+++|++|++++|+++...  .++..+..+++|++|++++|.++.....  
T Consensus       350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~--  421 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYD--  421 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSS--
T ss_pred             cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccCh--
Confidence            4678899999999988874    4455677889999999999988632  2445567779999999999988652110  


Q ss_pred             HHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       464 ~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                       ..+..+++|++|++++|.+++..+..+.      ++|++|++++|+|+..... +...     ++|++|++++|+|+..
T Consensus       422 -~~~~~l~~L~~L~l~~n~l~~~~~~~l~------~~L~~L~L~~N~l~~ip~~-~~~l-----~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          422 -RTCAWAESILVLNLSSNMLTGSVFRCLP------PKVKVLDLHNNRIMSIPKD-VTHL-----QALQELNVASNQLKSV  488 (562)
T ss_dssp             -CCCCCCTTCCEEECCSSCCCGGGGSSCC------TTCSEEECCSSCCCCCCTT-TTSS-----CCCSEEECCSSCCCCC
T ss_pred             -hhhcCcccCCEEECCCCCCCcchhhhhc------CcCCEEECCCCcCcccChh-hcCC-----CCCCEEECCCCCCCCC
Confidence             1234567899999999998764332211      5899999999998853222 1122     7899999999999854


Q ss_pred             HHHHHHHHHHhCcccceeEEEccCCCCchhHH
Q 007526          544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQ  575 (600)
Q Consensus       544 ~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~  575 (600)
                      ....+..    .+  .|+.|++++|++...-.
T Consensus       489 ~~~~~~~----l~--~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          489 PDGVFDR----LT--SLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CTTSTTT----CT--TCCCEECCSCCBCCCHH
T ss_pred             CHHHHhc----CC--CCCEEEecCCCcCCCcc
Confidence            4332322    22  39999999999886433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=1.9e-29  Score=281.10  Aligned_cols=144  Identities=23%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             hhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH----HHHhhCCCccEEeccCcCCChh
Q 007526          411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS----EVLKFHGNINTLKLGWCQIGAS  486 (600)
Q Consensus       411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~L~~L~l~~n~i~~~  486 (600)
                      +..+++|++|++++|.++....    ..+..+++|++|++++|.++......+.    ..+..+++|++|++++|.++..
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANIND----DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             cccCCCCCEEECCCCCCCcCCh----hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            3344555555555555543211    2233345555555555554432111100    0123445555555555555543


Q ss_pred             HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEcc
Q 007526          487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA  566 (600)
Q Consensus       487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~  566 (600)
                      +...    +..+++|++|++++|.++......+...     ++|++|++++|+|++.....+...+.     .++.|+++
T Consensus       552 ~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~~~~-----~L~~l~l~  617 (680)
T 1ziw_A          552 PVEV----FKDLFELKIIDLGLNNLNTLPASVFNNQ-----VSLKSLNLQKNLITSVEKKVFGPAFR-----NLTELDMR  617 (680)
T ss_dssp             CTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECTTSCCCBCCHHHHHHHHT-----TCSEEECT
T ss_pred             CHHH----cccccCcceeECCCCCCCcCCHhHhCCC-----CCCCEEECCCCcCCccChhHhccccc-----ccCEEEcc
Confidence            2222    2334556666666555554332222221     45666666666655544444431222     25566666


Q ss_pred             CCCCch
Q 007526          567 NNFLTK  572 (600)
Q Consensus       567 ~n~l~~  572 (600)
                      +|++..
T Consensus       618 ~N~~~c  623 (680)
T 1ziw_A          618 FNPFDC  623 (680)
T ss_dssp             TCCCCB
T ss_pred             CCCccc
Confidence            655543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=1.8e-28  Score=273.40  Aligned_cols=384  Identities=17%  Similarity=0.176  Sum_probs=257.1

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccC--CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYN--QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~--~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      ..++|++|++++|.+....    ...+..+  ++|++|++++|.++....    ..+..+++|++|++++|++...    
T Consensus       220 ~~~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----  287 (680)
T 1ziw_A          220 ANTSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGN----DSFAWLPQLEYFFLEYNNIQHL----  287 (680)
T ss_dssp             TTSCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSCCBSEE----
T ss_pred             hhccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCc----ccccCcccccEeeCCCCccCcc----
Confidence            3578999999999887542    2233333  459999999998864322    3356778999999999988764    


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChH-HHHHHHH----HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCC
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDE-GAKAIAE----LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN  312 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~-~~~~l~~----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n  312 (600)
                      .+..+..+++|+.|++++|..... ....++.    .+..+++|++|++++|.+++..    +..+..+++|++|++++|
T Consensus       288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTC
T ss_pred             ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCC
Confidence            334556678999999987754321 0001111    3455788999999999887532    334567889999999988


Q ss_pred             CCCh--HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH-HHHHhCCCC
Q 007526          313 YGGA--LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKNCKSL  389 (600)
Q Consensus       313 ~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L  389 (600)
                      .++.  .....+.  -...++|+.|++++|.++......+     ...++|+.|++++|.++..    ++ ..+..+++|
T Consensus       364 ~~~~~~l~~~~f~--~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L  432 (680)
T 1ziw_A          364 FTSLRTLTNETFV--SLAHSPLHILNLTKNKISKIESDAF-----SWLGHLEVLDLGLNEIGQE----LTGQEWRGLENI  432 (680)
T ss_dssp             BSCCCEECTTTTG--GGTTSCCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSSCCEEE----CCSGGGTTCTTC
T ss_pred             chhhhhcchhhhc--ccccCcCceEECCCCCCCeEChhhh-----hCCCCCCEEeCCCCcCccc----cCcccccCcccc
Confidence            6432  1111010  0123579999999998876422222     3445899999999988642    22 346788899


Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526          390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF  469 (600)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  469 (600)
                      ++|++++|.+.+.    ....+..++.|++|++++|.++..+  .++..+..+++|++|++++|.++....    ..+..
T Consensus       433 ~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~--~~p~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~  502 (680)
T 1ziw_A          433 FEIYLSYNKYLQL----TRNSFALVPSLQRLMLRRVALKNVD--SSPSPFQPLRNLTILDLSNNNIANIND----DMLEG  502 (680)
T ss_dssp             CEEECCSCSEEEC----CTTTTTTCTTCCEEECTTSCCBCTT--CSSCTTTTCTTCCEEECCSSCCCCCCT----TTTTT
T ss_pred             cEEecCCCCccee----ChhhhhcCcccccchhccccccccc--cCCcccccCCCCCEEECCCCCCCcCCh----hhhcc
Confidence            9999999987653    2234566789999999998875422  133456677899999999998875432    23456


Q ss_pred             CCCccEEeccCcCCChhHHHHHHH----HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526          470 HGNINTLKLGWCQIGASGAEFVAD----MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA  545 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~  545 (600)
                      +++|++|++++|.++......+..    .+..+++|++|++++|.++......+...     ++|++|++++|+|+....
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l-----~~L~~L~Ls~N~l~~l~~  577 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL-----FELKIIDLGLNNLNTLPA  577 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECCSSCCCCCCT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc-----cCcceeECCCCCCCcCCH
Confidence            788999999999887653322111    24567899999999998886544334333     789999999999986554


Q ss_pred             HHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhhhhhHh
Q 007526          546 FAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIKSLFHS  594 (600)
Q Consensus       546 ~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~~l~~~  594 (600)
                      ..+....      +|++|+|++|+++......+..   ....++.++++
T Consensus       578 ~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~---~~~~L~~l~l~  617 (680)
T 1ziw_A          578 SVFNNQV------SLKSLNLQKNLITSVEKKVFGP---AFRNLTELDMR  617 (680)
T ss_dssp             TTTTTCT------TCCEEECTTSCCCBCCHHHHHH---HHTTCSEEECT
T ss_pred             hHhCCCC------CCCEEECCCCcCCccChhHhcc---cccccCEEEcc
Confidence            4333222      3999999999998876665431   12445555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-27  Score=247.69  Aligned_cols=317  Identities=16%  Similarity=0.116  Sum_probs=210.1

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .+++++.|+++++.++...    ...+..+++|++|++++|.++....    ..+..+++|++|++++|.++..    .+
T Consensus        43 ~l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~  110 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYL----PP  110 (390)
T ss_dssp             GGCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred             ccCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcC----CH
Confidence            3677888888888776532    2234557888888888888764322    2345678888888888887764    22


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      ..+..+++|++|++++|+++....    ..+..+++|++|++++|.++...    +..+..+++|++|++++|.++..+ 
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-  181 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-  181 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC-
T ss_pred             HHhcCCCCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc-
Confidence            345567888888888888775321    22355688888888888876422    234556788888888888877643 


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI  399 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  399 (600)
                            +..+++|++|++++|.++..          ...+.|+.|++++|.+...     +.  ...++|++|++++|.+
T Consensus       182 ------~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l  238 (390)
T 3o6n_A          182 ------LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNL  238 (390)
T ss_dssp             ------GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCC
T ss_pred             ------cccccccceeeccccccccc----------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCC
Confidence                  34567888888888877652          2334788888888877762     21  2346788888888877


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                      ++.      ..+..+++|++|++++|.++...    +..+..+++|++|++++|.++...     .....+++|++|+++
T Consensus       239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          239 TDT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLS  303 (390)
T ss_dssp             CCC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECC
T ss_pred             ccc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECC
Confidence            763      34566778888888888777642    234555678888888888776532     112345677777887


Q ss_pred             CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHH
Q 007526          480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI  548 (600)
Q Consensus       480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l  548 (600)
                      +|.++..... +..    +++|++|++++|.|++..   +..     .++|++|++++|++.......+
T Consensus       304 ~n~l~~~~~~-~~~----l~~L~~L~L~~N~i~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~~~  359 (390)
T 3o6n_A          304 HNHLLHVERN-QPQ----FDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLRAL  359 (390)
T ss_dssp             SSCCCCCGGG-HHH----HTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHHHH
T ss_pred             CCcceecCcc-ccc----cCcCCEEECCCCccceeC---chh-----hccCCEEEcCCCCccchhHHHH
Confidence            7777654322 223    377777777777777643   111     1667777777777776544433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.9e-29  Score=275.26  Aligned_cols=370  Identities=14%  Similarity=0.121  Sum_probs=226.5

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+....    ...+..+++|++|++++|.++....    ..+..+++|++|++++|.++..... 
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~~-  118 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GAFSGLSSLQKLVAVETNLASLENF-  118 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTSCCCCSTTC-
T ss_pred             hhCCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccCH----hhhcCccccccccccccccccCCCc-
Confidence            456788888888888886531    3446678888888888888764322    2355678888888888887653211 


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc----cEEEccCCC
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNY  313 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L----~~L~L~~n~  313 (600)
                         .+..+++|++|++++|.++...   ++..+.++++|++|++++|.++.....    .+..+.+|    +.|++++|.
T Consensus       119 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~~~~~L~l~~n~  188 (570)
T 2z63_A          119 ---PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNP  188 (570)
T ss_dssp             ---SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGG----GGHHHHTCTTCCCEEECTTCC
T ss_pred             ---cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHH----HccchhccchhhhhcccCCCC
Confidence               2556788899999888876521   234456678899999998888653211    11122223    445555444


Q ss_pred             CChHHHHH------------------------------------------------------------------------
Q 007526          314 GGALGANA------------------------------------------------------------------------  321 (600)
Q Consensus       314 l~~~~~~~------------------------------------------------------------------------  321 (600)
                      ++......                                                                        
T Consensus       189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~  268 (570)
T 2z63_A          189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  268 (570)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred             ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence            33211100                                                                        


Q ss_pred             -----HHHHhhcCCCCCEEEccCCCCCchHH--H---------------HHHH-hhh------------------cCCCc
Q 007526          322 -----LAKGLEGNKSLRELHLHGNSIGDEGI--R---------------ALMS-GLS------------------SRKGK  360 (600)
Q Consensus       322 -----l~~~l~~~~~L~~L~Ls~n~l~~~~~--~---------------~l~~-~l~------------------~~~~~  360 (600)
                           ++..+..+++|++|++++|.+.....  .               .+.. .+.                  ...++
T Consensus       269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence                 00112233455555555544332000  0               0000 000                  12345


Q ss_pred             ccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526          361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK  440 (600)
Q Consensus       361 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  440 (600)
                      |+.|++++|.++..+.  .+..+..+++|++|++++|.+.+.     +..+..+++|++|++++|.++....   ...+.
T Consensus       349 L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~  418 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFL  418 (570)
T ss_dssp             CCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---SCTTT
T ss_pred             CCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---hhhhh
Confidence            6666666666654210  124456677777777777766552     2225556778888888777654311   12345


Q ss_pred             cCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526          441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA  520 (600)
Q Consensus       441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  520 (600)
                      .+++|++|++++|.+....    ...+..+++|++|++++|.+++..   +...+..+++|++|++++|.+++..+..+.
T Consensus       419 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~  491 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFN  491 (570)
T ss_dssp             TCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             cCCCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhhhh
Confidence            6688888888888776542    233456789999999999876311   123456679999999999999986555555


Q ss_pred             HHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526          521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG  574 (600)
Q Consensus       521 ~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~  574 (600)
                      ..     ++|++|++++|++++..+..+..+    +  +|++|++++|+++...
T Consensus       492 ~l-----~~L~~L~l~~n~l~~~~~~~~~~l----~--~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          492 SL-----SSLQVLNMASNQLKSVPDGIFDRL----T--SLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             TC-----TTCCEEECCSSCCSCCCTTTTTTC----T--TCCEEECCSSCBCCCT
T ss_pred             cc-----cCCCEEeCCCCcCCCCCHHHhhcc----c--CCcEEEecCCcccCCC
Confidence            43     789999999999987655444332    2  3999999999988643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=5.6e-27  Score=243.18  Aligned_cols=315  Identities=18%  Similarity=0.152  Sum_probs=244.2

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      ..+++.|++++|.++.....    .+..+++|++|++++|.+++..    ...+..+++|++|++++|.++...    +.
T Consensus        44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~  111 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PH  111 (390)
T ss_dssp             GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred             cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccC----hhhccCCCCcCEEECCCCCCCcCC----HH
Confidence            47999999999987654332    2456789999999999998642    234566799999999999988743    23


Q ss_pred             HHhcCCCccEEeecCCCCChhhHHHHHH-HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHH
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGI  347 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  347 (600)
                      .+..+++|++|++++|.++.     ++. .+..+++|++|++++|.++....    ..+..+++|++|++++|.++..++
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~  182 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSS-----LPRGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL  182 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG
T ss_pred             HhcCCCCCCEEECCCCccCc-----CCHHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc
Confidence            35667999999999999863     232 24678999999999999876543    346688999999999999987532


Q ss_pred             HHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCC
Q 007526          348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI  427 (600)
Q Consensus       348 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  427 (600)
                              ...++|+.|++++|.++..         ...++|++|++++|.+...     +  ....++|++|++++|.+
T Consensus       183 --------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~-----~--~~~~~~L~~L~l~~n~l  238 (390)
T 3o6n_A          183 --------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVV-----R--GPVNVELTILKLQHNNL  238 (390)
T ss_dssp             --------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEE-----E--CCCCSSCCEEECCSSCC
T ss_pred             --------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeec-----c--ccccccccEEECCCCCC
Confidence                    2345899999999998872         4567899999999999873     1  12357999999999999


Q ss_pred             ChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526          428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR  507 (600)
Q Consensus       428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  507 (600)
                      ++.      ..+..+++|++|++++|.+++...    ..+..+++|++|++++|.++....     .+..+++|++|+++
T Consensus       239 ~~~------~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          239 TDT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLS  303 (390)
T ss_dssp             CCC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECC
T ss_pred             ccc------HHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECC
Confidence            874      356778999999999999987533    334678899999999999987532     22456999999999


Q ss_pred             CCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHH
Q 007526          508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVIS  578 (600)
Q Consensus       508 ~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  578 (600)
                      +|.++.... .+...     ++|++|++++|+|+....       ...+  .|++|++++|++.......+
T Consensus       304 ~n~l~~~~~-~~~~l-----~~L~~L~L~~N~i~~~~~-------~~~~--~L~~L~l~~N~~~~~~~~~~  359 (390)
T 3o6n_A          304 HNHLLHVER-NQPQF-----DRLENLYLDHNSIVTLKL-------STHH--TLKNLTLSHNDWDCNSLRAL  359 (390)
T ss_dssp             SSCCCCCGG-GHHHH-----TTCSEEECCSSCCCCCCC-------CTTC--CCSEEECCSSCEEHHHHHHH
T ss_pred             CCcceecCc-ccccc-----CcCCEEECCCCccceeCc-------hhhc--cCCEEEcCCCCccchhHHHH
Confidence            999986432 24444     789999999999987531       2223  49999999999998765543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=3e-28  Score=259.72  Aligned_cols=208  Identities=18%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526          300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV  379 (600)
Q Consensus       300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  379 (600)
                      .+++|++|++++|.++....    ..+..+++|++|++++|.++......+     ...++|+.|++++|.+...    .
T Consensus       126 ~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~----~  192 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI----R  192 (477)
T ss_dssp             TCTTCCEEEECCTTCCEECT----TSSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE----C
T ss_pred             ccccCCEEECCCCccceeCh----hhccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe----C
Confidence            34444444444444433221    123344455555555554443222111     1223455555555544432    1


Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG  459 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  459 (600)
                      +..+..+++|++|++++|.+.+.    ++.......+|++|++++|.++....    ..+..+++|++|+|++|.++...
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEEC
T ss_pred             hhhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccC
Confidence            11234445555555555533221    11112223355555555555554322    12333455555555555554432


Q ss_pred             HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      .    ..+..+++|++|++++|.++...+..    +..+++|++|++++|.|+......+..+     ++|++|++++|.
T Consensus       265 ~----~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~  331 (477)
T 2id5_A          265 G----SMLHELLRLQEIQLVGGQLAVVEPYA----FRGLNYLRVLNVSGNQLTTLEESVFHSV-----GNLETLILDSNP  331 (477)
T ss_dssp             T----TSCTTCTTCCEEECCSSCCSEECTTT----BTTCTTCCEEECCSSCCSCCCGGGBSCG-----GGCCEEECCSSC
T ss_pred             h----hhccccccCCEEECCCCccceECHHH----hcCcccCCEEECCCCcCceeCHhHcCCC-----cccCEEEccCCC
Confidence            2    11234455555555555555543322    2334556666666655554332222222     455566666655


Q ss_pred             CC
Q 007526          540 IR  541 (600)
Q Consensus       540 i~  541 (600)
                      +.
T Consensus       332 l~  333 (477)
T 2id5_A          332 LA  333 (477)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=8.5e-28  Score=273.48  Aligned_cols=311  Identities=16%  Similarity=0.116  Sum_probs=171.4

Q ss_pred             HhCCCccEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          159 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       159 ~~~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      ..+++|++|+|++|.+...    + ...+..+++|++|+|++|.++..    .+..+..+++|++|+|++|.+++.... 
T Consensus        45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~-  115 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLK-  115 (844)
T ss_dssp             SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCST-
T ss_pred             cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCccccc-
Confidence            3566666777766633110    1 23455666777777777766532    123345566677777777666542100 


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL  317 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  317 (600)
                       ...+..+++|++|+|++|.++...   .+..+.++++|++|++++|.++......+.. +. .++|+.|++++|.+...
T Consensus       116 -~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~-~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          116 -DGYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQ-GKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             -TCCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HH-HCSSCCCEECCSBSCCC
T ss_pred             -CccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHccc-cc-CCccceEECCCCccccc
Confidence             011445566777777777665421   1123445567777777777665422111111 00 15566666665554331


Q ss_pred             HHHHHHHHhhcCC------CCCEEEccCCCCCchHHHHHHHhhh---------------------------------cCC
Q 007526          318 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS---------------------------------SRK  358 (600)
Q Consensus       318 ~~~~l~~~l~~~~------~L~~L~Ls~n~l~~~~~~~l~~~l~---------------------------------~~~  358 (600)
                      ..    ..+..++      .|+.|++++|.++......+...+.                                 ...
T Consensus       190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~  265 (844)
T 3j0a_A          190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR  265 (844)
T ss_dssp             CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred             cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence            11    0111222      3777788777655432222211110                                 001


Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      ++|+.|++++|.+...    .+..+..+++|++|+|++|.++..    .+..+..+++|++|++++|.++...    +..
T Consensus       266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~  333 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELY----SSN  333 (844)
T ss_dssp             SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCC----SCS
T ss_pred             CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccC----HHH
Confidence            4677888888877653    234456677888888888877764    2344566778888888888776532    233


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      +..+++|++|++++|.++.....    .+..+++|++|++++|.++....         +++|+.|++++|.++.
T Consensus       334 ~~~l~~L~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~---------~~~L~~L~l~~N~l~~  395 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIAIIQDQ----TFKFLEKLQTLDLRDNALTTIHF---------IPSIPDIFLSGNKLVT  395 (844)
T ss_dssp             CSSCTTCCEEECCSCCCCCCCSS----CSCSCCCCCEEEEETCCSCCCSS---------CCSCSEEEEESCCCCC
T ss_pred             hcCCCCCCEEECCCCCCCccChh----hhcCCCCCCEEECCCCCCCcccC---------CCCcchhccCCCCccc
Confidence            45567788888888877554221    23456778888888877765321         3566666666665553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=1.1e-27  Score=255.43  Aligned_cols=283  Identities=15%  Similarity=0.083  Sum_probs=198.6

Q ss_pred             hCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526          244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA  323 (600)
Q Consensus       244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~  323 (600)
                      .+++|++|+|++|.++...    +..+.++++|++|+|++|.++...    ...+..+++|++|++++|.++....    
T Consensus        54 ~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----  121 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLKLIP----LGVFTGLSNLTKLDISENKIVILLD----  121 (477)
T ss_dssp             TCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCC----TTSSTTCTTCCEEECTTSCCCEECT----
T ss_pred             CCCCCCEEECCCCccCEeC----hhhhhCCccCCEEECCCCcCCccC----cccccCCCCCCEEECCCCccccCCh----
Confidence            3455555555555544421    122334456666666666554211    1123456677777777777654432    


Q ss_pred             HHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHH
Q 007526          324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG  403 (600)
Q Consensus       324 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  403 (600)
                      ..+..+++|++|++++|.+.......+     ...++|+.|++++|.++..    .+..+..+++|+.|++++|.+... 
T Consensus       122 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~-  191 (477)
T 2id5_A          122 YMFQDLYNLKSLEVGDNDLVYISHRAF-----SGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNINAI-  191 (477)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTSS-----TTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEE-
T ss_pred             hHccccccCCEEECCCCccceeChhhc-----cCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCCCcCcEe-
Confidence            345688999999999999876432222     3445899999999999874    345678999999999999998874 


Q ss_pred             HHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCC
Q 007526          404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI  483 (600)
Q Consensus       404 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i  483 (600)
                         ....+..+++|++|++++|.+...    +........+|++|++++|.++.....    .+..+++|++|++++|.+
T Consensus       192 ---~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          192 ---RDYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTAVPYL----AVRHLVYLRFLNLSYNPI  260 (477)
T ss_dssp             ---CTTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCSCCHH----HHTTCTTCCEEECCSSCC
T ss_pred             ---ChhhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccccCHH----HhcCccccCeeECCCCcC
Confidence               223566789999999999876442    112222336899999999999865433    346789999999999999


Q ss_pred             ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEE
Q 007526          484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL  563 (600)
Q Consensus       484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L  563 (600)
                      +......    +..+++|++|+|++|.+++..+..+...     ++|++|++++|+|++.....+..+.      .|++|
T Consensus       261 ~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L  325 (477)
T 2id5_A          261 STIEGSM----LHELLRLQEIQLVGGQLAVVEPYAFRGL-----NYLRVLNVSGNQLTTLEESVFHSVG------NLETL  325 (477)
T ss_dssp             CEECTTS----CTTCTTCCEEECCSSCCSEECTTTBTTC-----TTCCEEECCSSCCSCCCGGGBSCGG------GCCEE
T ss_pred             CccChhh----ccccccCCEEECCCCccceECHHHhcCc-----ccCCEEECCCCcCceeCHhHcCCCc------ccCEE
Confidence            8775544    4556999999999999998655555443     7899999999999976554443332      39999


Q ss_pred             EccCCCCchhH
Q 007526          564 NLANNFLTKFG  574 (600)
Q Consensus       564 ~l~~n~l~~~~  574 (600)
                      +|++|++....
T Consensus       326 ~l~~N~l~c~c  336 (477)
T 2id5_A          326 ILDSNPLACDC  336 (477)
T ss_dssp             ECCSSCEECSG
T ss_pred             EccCCCccCcc
Confidence            99999988653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.91  E-value=6.1e-27  Score=254.75  Aligned_cols=364  Identities=16%  Similarity=0.160  Sum_probs=227.1

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      +++++|+|++|.+....    ...+..+++|++|++++|.++...    +..+..+++|++|++++|+++..     +..
T Consensus        52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----p~~  118 (562)
T 3a79_B           52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNI-----SCC  118 (562)
T ss_dssp             TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEE-----CSC
T ss_pred             CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCcc-----Ccc
Confidence            67888888888776531    245667788888888888876432    23345667888888888887642     222


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCc--cEEEccCCCC--ChH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL  317 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~l--~~~  317 (600)
                        .+++|++|++++|+++...   ++..+.++++|++|++++|.++..+       +..++.|  ++|++++|.+  +..
T Consensus       119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~  186 (562)
T 3a79_B          119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG  186 (562)
T ss_dssp             --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred             --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence              5678888888888876521   1134556678888888888876532       2334444  8888888776  322


Q ss_pred             HHHHHHH----------------------HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhh
Q 007526          318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG  375 (600)
Q Consensus       318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~  375 (600)
                      ....+..                      .+..+++|+.|++++|...-..+......+. ..+.|+.|++.++.+....
T Consensus       187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~  265 (562)
T 3a79_B          187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC  265 (562)
T ss_dssp             SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred             CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence            1111100                      0112345666777766543333333333343 3457888888888888777


Q ss_pred             HHHHHHHHHhCCCCcEEEccCCCCChHHH----------------------------HHHHHHh----------------
Q 007526          376 AFHVAEYIKNCKSLLWINLYMNDIGDEGA----------------------------EKIADAL----------------  411 (600)
Q Consensus       376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~----------------------------~~l~~~l----------------  411 (600)
                      ...++..+. .++|++|++++|.+.+...                            ..+...+                
T Consensus       266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~  344 (562)
T 3a79_B          266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI  344 (562)
T ss_dssp             HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred             HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence            666665543 4589999999887663100                            1111111                


Q ss_pred             -----hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh-
Q 007526          412 -----KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA-  485 (600)
Q Consensus       412 -----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~-  485 (600)
                           ..+++|++|++++|.+++.    ++..+..+++|++|++++|.++..  ..+...+..+++|++|++++|.++. 
T Consensus       345 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          345 HMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             CCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             cccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc
Confidence                 4567788888888887763    234455668888888888887753  1233445667788888888888765 


Q ss_pred             hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEc
Q 007526          486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNL  565 (600)
Q Consensus       486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l  565 (600)
                      ....    .+..+++|++|++++|.+++..+..+       .++|++|++++|+|+.... .+.    ..+  .|++|+|
T Consensus       419 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~l-------~~~L~~L~L~~N~l~~ip~-~~~----~l~--~L~~L~L  480 (562)
T 3a79_B          419 AYDR----TCAWAESILVLNLSSNMLTGSVFRCL-------PPKVKVLDLHNNRIMSIPK-DVT----HLQ--ALQELNV  480 (562)
T ss_dssp             CSSC----CCCCCTTCCEEECCSSCCCGGGGSSC-------CTTCSEEECCSSCCCCCCT-TTT----SSC--CCSEEEC
T ss_pred             cChh----hhcCcccCCEEECCCCCCCcchhhhh-------cCcCCEEECCCCcCcccCh-hhc----CCC--CCCEEEC
Confidence            3221    23345788888888888876432211       1578999999998884222 121    222  3899999


Q ss_pred             cCCCCchhHHH
Q 007526          566 ANNFLTKFGQV  576 (600)
Q Consensus       566 ~~n~l~~~~~~  576 (600)
                      ++|+++..+..
T Consensus       481 ~~N~l~~l~~~  491 (562)
T 3a79_B          481 ASNQLKSVPDG  491 (562)
T ss_dssp             CSSCCCCCCTT
T ss_pred             CCCCCCCCCHH
Confidence            99998876554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.4e-26  Score=253.34  Aligned_cols=314  Identities=16%  Similarity=0.105  Sum_probs=196.8

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD  240 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  240 (600)
                      +++++.++++++.++...    ...+..+++|++|+|++|.++....    ..+..+++|++|+|++|.++..    .+.
T Consensus        50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~  117 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYL----PPH  117 (597)
T ss_dssp             GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred             CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCC----CHH
Confidence            566777777777665532    2234456777888887777654321    2345667788888877777653    223


Q ss_pred             HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526          241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN  320 (600)
Q Consensus       241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  320 (600)
                      .+..+++|++|+|++|.++...    ...+..+++|++|++++|.++..    .+..+..+++|++|++++|.++..+  
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--  187 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD--  187 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred             HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC--
Confidence            3455677788888877776521    12234567778888887777532    2334556777888888877776543  


Q ss_pred             HHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526          321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG  400 (600)
Q Consensus       321 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  400 (600)
                           +..+++|+.|++++|.++..          .....|+.|++++|.++..     +.  ...++|+.|++++|.++
T Consensus       188 -----~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          188 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT  245 (597)
T ss_dssp             -----GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred             -----hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence                 33567777778877777652          2233677777777777652     11  12356777777777777


Q ss_pred             hHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccC
Q 007526          401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW  480 (600)
Q Consensus       401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~  480 (600)
                      +.      ..+..+++|++|++++|.++...    +..+..+++|++|+|++|.++...     ..+..+++|++|++++
T Consensus       246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          246 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred             CC------hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCCCC-----cccccCCCCcEEECCC
Confidence            63      34566777777777777776642    234455677777777777776531     1223466777777777


Q ss_pred             cCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHH
Q 007526          481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF  546 (600)
Q Consensus       481 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~  546 (600)
                      |.++..+. .+..    +++|++|+|++|.++...   +..     .++|++|++++|++......
T Consensus       311 N~l~~i~~-~~~~----l~~L~~L~L~~N~l~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          311 NHLLHVER-NQPQ----FDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             SCCCCCGG-GHHH----HTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHH
T ss_pred             CCCCccCc-cccc----CCCCCEEECCCCCCCCcC---hhh-----cCCCCEEEeeCCCCCChhHH
Confidence            77765432 2222    377777777777776643   111     16677777777777765433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=1.6e-25  Score=236.22  Aligned_cols=302  Identities=17%  Similarity=0.161  Sum_probs=223.6

Q ss_pred             HhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007526          159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL  238 (600)
Q Consensus       159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  238 (600)
                      ..+++|++|++++|.+.+.     + .+..+++|++|++++|.++..     .  +..+++|++|++++|.++...    
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~~----  101 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNLD----  101 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC----
T ss_pred             hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCceee----
Confidence            3578999999999999863     2 477889999999999998763     1  567899999999999998741    


Q ss_pred             HHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCC-CChH
Q 007526          239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGAL  317 (600)
Q Consensus       239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~  317 (600)
                         +..+++|++|++++|+++..     .  +..+++|++|++++|.+++.       .+..+++|++|++++|. ++..
T Consensus       102 ---~~~l~~L~~L~L~~N~l~~l-----~--~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          102 ---VTPLTKLTYLNCDTNKLTKL-----D--VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             ---CTTCTTCCEEECCSSCCSCC-----C--CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred             ---cCCCCcCCEEECCCCcCCee-----c--CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence               56789999999999999874     1  56779999999999999763       25678999999999994 4432


Q ss_pred             HHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526          318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       318 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  397 (600)
                             .+..+++|++|++++|.+++..       + ...++|+.|++++|.++..       .+..+++|++|++++|
T Consensus       165 -------~~~~l~~L~~L~ls~n~l~~l~-------l-~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          165 -------DVTPQTQLTTLDCSFNKITELD-------V-SQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN  222 (457)
T ss_dssp             -------CCTTCTTCCEEECCSSCCCCCC-------C-TTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred             -------ccccCCcCCEEECCCCccceec-------c-ccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence                   2557899999999999998742       2 3445899999999999873       2678899999999999


Q ss_pred             CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH------HHHHHHhhCC
Q 007526          398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK------ALSEVLKFHG  471 (600)
Q Consensus       398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------~l~~~l~~~~  471 (600)
                      .+++     ++  +..+++|++|++++|.++...       +..+++|+.|++++|.+......      .+.  ...++
T Consensus       223 ~l~~-----ip--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~  286 (457)
T 3bz5_A          223 KLTE-----ID--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR  286 (457)
T ss_dssp             CCSC-----CC--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred             cccc-----cC--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence            9988     33  667899999999999998742       33456666666655543221100      000  23567


Q ss_pred             CccEEeccCcCCChhHH------HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          472 NINTLKLGWCQIGASGA------EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       472 ~L~~L~l~~n~i~~~~~------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                      +|+.|++++|.....-+      ..+  .+..+++|++|++++|.+++..   +..+     +.|++|++++|+|++
T Consensus       287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~---l~~l-----~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          287 KIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD---VSHN-----TKLKSLSCVNAHIQD  353 (457)
T ss_dssp             TCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC---CTTC-----TTCSEEECCSSCCCB
T ss_pred             cCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCcccccc---cccC-----CcCcEEECCCCCCCC
Confidence            88888888885322110      000  1445678888888888877741   3222     678888888888876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=7.7e-26  Score=247.55  Aligned_cols=314  Identities=18%  Similarity=0.154  Sum_probs=242.8

Q ss_pred             CCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       189 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      +.+++.+++++|.++.....    .+..+++|++|+|++|.++..    ....+..+++|++|+|++|.++...    +.
T Consensus        50 l~~l~~l~l~~~~l~~lp~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~  117 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEI----DTYAFAYAHTIQKLYMGFNAIRYLP----PH  117 (597)
T ss_dssp             GCCCSEEEESSCEESEECTH----HHHHCCCCSEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred             CCCceEEEeeCCCCCCcCHH----HHccCCCCcEEECCCCCCCCC----ChHHhcCCCCCCEEECCCCcCCCCC----HH
Confidence            46899999999987654332    245678999999999999874    2235567899999999999988743    23


Q ss_pred             HHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHH
Q 007526          269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR  348 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  348 (600)
                      .+..+++|++|+|++|.++...    +..+..+++|++|++++|.++....    ..+..+++|++|++++|.+++..+ 
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~-  188 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL-  188 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECTTSCCSBCCG-
T ss_pred             HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECcCCCCCCcCh-
Confidence            3466799999999999986321    2234678999999999999876543    346688999999999999987532 


Q ss_pred             HHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526          349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH  428 (600)
Q Consensus       349 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  428 (600)
                             ...++|+.|++++|.++.         +...++|++|++++|.+...     ..  ...++|+.|++++|.++
T Consensus       189 -------~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          189 -------SLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT  245 (597)
T ss_dssp             -------GGCTTCSEEECCSSCCSE---------EECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred             -------hhhhhhhhhhcccCcccc---------ccCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence                   234589999999999987         24567899999999998763     11  12478999999999998


Q ss_pred             hHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccC
Q 007526          429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA  508 (600)
Q Consensus       429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  508 (600)
                      +.      ..+..+++|++|+|++|.+++...    ..+..+++|++|++++|.++..+.     .+..+++|++|+|++
T Consensus       246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~l~~-----~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          246 DT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECTTSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred             CC------hhhccCCCCCEEECCCCccCCCCH----HHhcCccCCCEEECCCCCCCCCCc-----ccccCCCCcEEECCC
Confidence            73      456778999999999999987533    334678899999999999987532     224569999999999


Q ss_pred             CCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHH
Q 007526          509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQV  576 (600)
Q Consensus       509 n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~  576 (600)
                      |.++... ..+..+     ++|++|+|++|.|++...       ...+  .|+.|++++|++......
T Consensus       311 N~l~~i~-~~~~~l-----~~L~~L~L~~N~l~~~~~-------~~~~--~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          311 NHLLHVE-RNQPQF-----DRLENLYLDHNSIVTLKL-------STHH--TLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             SCCCCCG-GGHHHH-----TTCSEEECCSSCCCCCCC-------CTTC--CCSEEECCSSCEEHHHHH
T ss_pred             CCCCccC-cccccC-----CCCCEEECCCCCCCCcCh-------hhcC--CCCEEEeeCCCCCChhHH
Confidence            9998643 234444     889999999999987542       2223  499999999999876543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.90  E-value=1.9e-27  Score=270.53  Aligned_cols=286  Identities=19%  Similarity=0.152  Sum_probs=166.6

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|+|++|.+...    .+..+..+++|++|+|++|.++......  ..+..+++|++|+|++|.++...   
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~---  139 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLY---  139 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCC---
T ss_pred             hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccc---
Confidence            45788899999999988763    2456778899999999999886321111  12567889999999999886532   


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCC------CccEEEccC
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS------TIRSLHLNG  311 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~------~L~~L~L~~  311 (600)
                      .+..+.++++|++|++++|.++......+.....  ++|+.|++++|.++...    +..+..+.      .|+.|++++
T Consensus       140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~----~~~~~~~~~~~~~~~L~~L~Ls~  213 (844)
T 3j0a_A          140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRV----SVDWGKCMNPFRNMVLEILDVSG  213 (844)
T ss_dssp             CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCC----CCCCCSSSCTTTTCCBSEEBCSS
T ss_pred             cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccccc----ccchhhcCCccccCceeEEecCC
Confidence            1235667899999999999887644334433321  56677777766654311    11111111      366666666


Q ss_pred             CCCChHHHHHHHHH--------------------------------hhc--CCCCCEEEccCCCCCchHHHHHHHhhhcC
Q 007526          312 NYGGALGANALAKG--------------------------------LEG--NKSLRELHLHGNSIGDEGIRALMSGLSSR  357 (600)
Q Consensus       312 n~l~~~~~~~l~~~--------------------------------l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  357 (600)
                      |.++......+...                                +..  .++|++|++++|.+......    .+ ..
T Consensus       214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----~~-~~  288 (844)
T 3j0a_A          214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----VF-ET  288 (844)
T ss_dssp             CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----CS-SS
T ss_pred             CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh----hh-hc
Confidence            65433221111111                                111  24577777777766543111    11 23


Q ss_pred             CCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR  437 (600)
Q Consensus       358 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  437 (600)
                      .++|+.|++++|.++..    .+..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.++....    .
T Consensus       289 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~----~  356 (844)
T 3j0a_A          289 LKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQD----Q  356 (844)
T ss_dssp             CCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCCS----S
T ss_pred             CCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccCh----h
Confidence            34677777777766653    233455666777777777766542    22345556667777777776654321    2


Q ss_pred             HhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       438 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                      .+..+++|++|+|++|.++..         ..+++|+.|++++|.++
T Consensus       357 ~~~~l~~L~~L~Ls~N~l~~i---------~~~~~L~~L~l~~N~l~  394 (844)
T 3j0a_A          357 TFKFLEKLQTLDLRDNALTTI---------HFIPSIPDIFLSGNKLV  394 (844)
T ss_dssp             CSCSCCCCCEEEEETCCSCCC---------SSCCSCSEEEEESCCCC
T ss_pred             hhcCCCCCCEEECCCCCCCcc---------cCCCCcchhccCCCCcc
Confidence            234456677777776666532         11345555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=4.5e-27  Score=256.53  Aligned_cols=189  Identities=16%  Similarity=0.192  Sum_probs=142.8

Q ss_pred             hcCCCCCEEEccCCCCCchH--HHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526          327 EGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA  404 (600)
Q Consensus       327 ~~~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  404 (600)
                      ..+++|++|++++|.++..+  ...+     ...++|++|++++|.+..     ++..+..+++|++|++++|.+.+...
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~  413 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSD-----FGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE  413 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHH-----HTCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccc-----cccCccCEEECCCCcccc-----ccccccccCCCCEEEccCCccccccc
Confidence            35678899999999887542  1122     234589999999999877     33336789999999999998765311


Q ss_pred             HHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                         ...+..+++|++|++++|.++..    .+..+..+++|++|++++|.+.+..   +...+..+++|++|++++|.++
T Consensus       414 ---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~  483 (570)
T 2z63_A          414 ---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLE  483 (570)
T ss_dssp             ---SCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCC
T ss_pred             ---hhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccc
Confidence               12466789999999999998764    2344666799999999999886321   2234567899999999999998


Q ss_pred             hhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhH
Q 007526          485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG  544 (600)
Q Consensus       485 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~  544 (600)
                      +..+..    +..+++|++|++++|.+++.....+...     ++|++|++++|++++..
T Consensus       484 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          484 QLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             EECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCCT
T ss_pred             cCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcc-----cCCcEEEecCCcccCCC
Confidence            875544    4456999999999999998655444443     78999999999998643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=5e-25  Score=232.37  Aligned_cols=315  Identities=17%  Similarity=0.175  Sum_probs=234.6

Q ss_pred             HHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007526          158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC  237 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  237 (600)
                      +..+++|++|++++|.++..     .  +..+++|++|++++|.++...       +..+++|++|++++|+++..    
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~-----~--~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l----  121 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL-----D--LSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKL----  121 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCC----
T ss_pred             hcccCCCCEEEccCCcCCeE-----c--cccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCee----
Confidence            45789999999999999873     2  677899999999999987531       56789999999999999863    


Q ss_pred             HHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCC-CChhhHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGA  316 (600)
Q Consensus       238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  316 (600)
                       .  +..+++|++|++++|+++...       +..+++|++|++++|. ++..       .+..+++|++|++++|.++.
T Consensus       122 -~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          122 -D--VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             -C--CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC
T ss_pred             -c--CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce
Confidence             1  567899999999999998741       5567999999999994 4322       24578999999999999887


Q ss_pred             HHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccC
Q 007526          317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM  396 (600)
Q Consensus       317 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~  396 (600)
                      .+       +..+++|++|++++|.+++..       + ...++|+.|++++|.++.     ++  +..+++|++|++++
T Consensus       185 l~-------l~~l~~L~~L~l~~N~l~~~~-------l-~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          185 LD-------VSQNKLLNRLNCDTNNITKLD-------L-NQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CC-------CTTCTTCCEEECCSSCCSCCC-------C-TTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCS
T ss_pred             ec-------cccCCCCCEEECcCCcCCeec-------c-ccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeC
Confidence            43       567899999999999998752       2 344689999999999988     44  67899999999999


Q ss_pred             CCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH------HHHHHhhcCCCcCEEECcCCCCChhH------HHHHH
Q 007526          397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS------AIARVLKDNSVITSLDLAYNPIGADG------AKALS  464 (600)
Q Consensus       397 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~~~~------~~~l~  464 (600)
                      |.+++..       +..+++|+.|++++|.+......      .++  ...+++|+.|++++|.....-      ...+ 
T Consensus       243 N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L-  312 (457)
T 3bz5_A          243 NPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL-  312 (457)
T ss_dssp             SCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred             CcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence            9998742       33456666555555544321100      011  245689999999999632110      0111 


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhH
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG  544 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~  544 (600)
                       .+..+++|++|++++|++++..       +..+++|+.|++++|++++.             +.|..|++++|.+.+.+
T Consensus       313 -~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l-------------~~L~~L~l~~n~l~g~~  371 (457)
T 3bz5_A          313 -DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF-------------SSVGKIPALNNNFEAEG  371 (457)
T ss_dssp             -CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC-------------TTGGGSSGGGTSEEEEE
T ss_pred             -chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc-------------cccccccccCCcEEecc
Confidence             1456789999999999998852       56789999999999999972             44666677777776541


Q ss_pred             HHHHHHHHHhCcccceeEEEccCCCCc
Q 007526          545 AFAIAQALKANEDVAVTSLNLANNFLT  571 (600)
Q Consensus       545 ~~~l~~~~~~~~~~~L~~L~l~~n~l~  571 (600)
                               ..  ..+..+++++|.++
T Consensus       372 ---------~~--~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          372 ---------QT--ITMPKETLTNNSLT  387 (457)
T ss_dssp             ---------EE--EECCCBCCBTTBEE
T ss_pred             ---------ee--eecCccccccCcEE
Confidence                     11  13666777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.89  E-value=7.9e-22  Score=201.62  Aligned_cols=214  Identities=20%  Similarity=0.275  Sum_probs=145.5

Q ss_pred             CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526          330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD  409 (600)
Q Consensus       330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  409 (600)
                      ++|++|++++|.+++.+...+...+....+.|++|+|++|.+++.+...+...+.   +|++|+|++|.+++.+...+..
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence            4566666666666666666666655544446777777777776665555544433   5677777777777777777777


Q ss_pred             Hhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHH
Q 007526          410 ALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA  488 (600)
Q Consensus       410 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~  488 (600)
                      .+. .+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.++..+...+..+++|++|++++|.|++.+.
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence            664 3677777777777777777777777777777788888888888777777777777777778888888888887777


Q ss_pred             HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE--ccCCCCChhHHH
Q 007526          489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID--LAFNEIRDDGAF  546 (600)
Q Consensus       489 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~--ls~n~i~~~~~~  546 (600)
                      ..++..+..+++|++|+|++|.|++.++..+........+.|+.+.  +..|.+.+....
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~  288 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV  288 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence            7777777777888888888888888777777664331112277776  667766654333

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=1.2e-26  Score=256.36  Aligned_cols=193  Identities=17%  Similarity=0.204  Sum_probs=126.4

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH--------------------HHHHHhhcCCCcc
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE--------------------KIADALKQNRTIT  418 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~l~~~~~L~  418 (600)
                      ++|+.|+++.|.+...+.  .+.....+.+|+++++..|.+......                    .-...+..+++++
T Consensus       371 ~~L~~L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             TTCCEEECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             cccccchhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            468888998887754221  122344555666666555432210000                    0011234456777


Q ss_pred             EEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhC
Q 007526          419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN  498 (600)
Q Consensus       419 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~  498 (600)
                      .+++++|.+....    ...+...+.|++|++++|.+....   ....+..+++|++|++++|+++...+..    +..+
T Consensus       449 ~l~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l  517 (635)
T 4g8a_A          449 YLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSL  517 (635)
T ss_dssp             EEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTC
T ss_pred             ccccccccccccc----ccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHH----HcCC
Confidence            7777777765532    223445588999999988643211   1123466789999999999998876544    4456


Q ss_pred             CCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526          499 NTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG  574 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~  574 (600)
                      ++|++|+|++|+|+......+...     ++|++|||++|+|++..+..+.....     +|++|+|++|++.-.-
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~~-----~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCL-----NSLQVLDYSLNHIMTSKKQELQHFPS-----SLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTC-----TTCCEEECTTSCCCBCCSSCTTCCCT-----TCCEEECTTCCBCCSG
T ss_pred             CCCCEEECCCCcCCCCChhHHhCC-----CCCCEEECCCCcCCCCCHHHHHhhhC-----cCCEEEeeCCCCcccC
Confidence            999999999999988655544443     78999999999999876655543211     4999999999998653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.88  E-value=3.2e-21  Score=197.13  Aligned_cols=209  Identities=19%  Similarity=0.300  Sum_probs=123.1

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH
Q 007526          302 STIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA  380 (600)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  380 (600)
                      +.|++|++++|.++..+...++..+... ++|++|+|++|.+++.++..+...+.    +|+.|+|++|.+++.+...+.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~----~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL----RARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH----TEEEEECCSSCCCHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH----hccHhhcCCCCCCHHHHHHHH
Confidence            3455555555555555555555544433 45666666666666555555554444    466666666666666666565


Q ss_pred             HHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526          381 EYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG  459 (600)
Q Consensus       381 ~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  459 (600)
                      ..+. ..++|++|+|++|.|++.+...++.++..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.+
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g  227 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA  227 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence            5553 355666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhC-CCccEEE--ccCCCCChH
Q 007526          460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYN-NTISILD--LRANGLRDE  514 (600)
Q Consensus       460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~-~~L~~L~--Ls~n~i~~~  514 (600)
                      ...+...+..+++|++|++++|.|++.+...+..+.... ..|+.+.  +.+|.+++.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred             HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence            666666666666666666666666666666665543222 1266666  555666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=7.9e-25  Score=221.54  Aligned_cols=247  Identities=21%  Similarity=0.210  Sum_probs=152.3

Q ss_pred             CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007526          163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL  242 (600)
Q Consensus       163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  242 (600)
                      +++.++++++.+..     ++..+  .+++++|++++|.++....    ..+..+++|++|++++|.++..    .+..+
T Consensus        32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKI----SPGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCB----CTTTT
T ss_pred             CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCee----CHHHh
Confidence            46778888777654     22211  3578888888887764322    2345677888888888877653    23445


Q ss_pred             hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      ..+++|++|++++|.++..     +..+  .++|++|++++|.++...    ...+..+++|++|++++|.++..+.  .
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~  163 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--E  163 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--C
T ss_pred             cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--C
Confidence            5667888888888877642     1111  257888888888776432    3345567788888888877754321  1


Q ss_pred             HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526          323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE  402 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  402 (600)
                      ...+..+++|++|++++|.++..     ...   ..++|++|++++|.++..    .+..+..+++|++|++++|.+++.
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~l-----~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITTI-----PQG---LPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSC-----CSS---CCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             hhhccCCCCcCEEECCCCccccC-----Ccc---ccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence            13455677788888887776642     111   113677777777777653    234456667777777777776653


Q ss_pred             HHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                          ....+..+++|++|++++|.++.     ++..+..+++|++|++++|+|+..
T Consensus       232 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          232 ----DNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             ----CTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             ----ChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCcc
Confidence                12234556667777777776663     333445556666666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=4.8e-24  Score=217.88  Aligned_cols=177  Identities=15%  Similarity=0.083  Sum_probs=95.2

Q ss_pred             cccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          360 KLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      +|++|++++| .++..    .+..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.++......+   
T Consensus       150 ~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---  218 (353)
T 2z80_A          150 KLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLEIFV---  218 (353)
T ss_dssp             TCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHHHHH---
T ss_pred             CCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchhhhh---
Confidence            5555555555 23331    112344555666666666665543    23344555666666666666654432222   


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKC  518 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  518 (600)
                       ..+++|++|++++|.+++.....+.. ...+..++.++++++.+++.....+...+..+++|++|++++|.++......
T Consensus       219 -~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~  296 (353)
T 2z80_A          219 -DVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI  296 (353)
T ss_dssp             -HHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred             -hhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence             22366666666666665443322221 2345567777777777777666666666677777777777777776533221


Q ss_pred             HHHHHhhcCccccEEEccCCCCChhH--HHHHHHHHHh
Q 007526          519 LAQSFKVVNEALTSIDLAFNEIRDDG--AFAIAQALKA  554 (600)
Q Consensus       519 l~~~l~~~n~~L~~L~ls~n~i~~~~--~~~l~~~~~~  554 (600)
                      +...     ++|++|++++|++....  ...+..+...
T Consensus       297 ~~~l-----~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          297 FDRL-----TSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             TTTC-----TTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             HhcC-----CCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence            2222     56777777777776543  3344444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.1e-21  Score=196.87  Aligned_cols=255  Identities=17%  Similarity=0.219  Sum_probs=134.2

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      ..++.++++++.+.+..   +...+.  ++++.|++++|.+++...     .+..+++|++|++++|.++..+   ++..
T Consensus        47 ~~~~~l~l~~~~~~~~~---~~~~~~--~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~---~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGKNLHPDV---TGRLLS--QGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVST---LHGI  113 (336)
T ss_dssp             TTSSEEECTTCBCCHHH---HHHHHH--TTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHH---HHHH
T ss_pred             hhheeeccccccCCHHH---HHhhhh--ccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHH---HHHH
Confidence            34777777777776432   222222  567777777776653211     1234566666666666655432   2234


Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEG  403 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~  403 (600)
                      +..+++|++|++++|.+++.....+     ...++|++|++++| .+++.+   ++..+..+++|++|++++| .+++.+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~  185 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKH  185 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHH-----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHH
Confidence            4556666666666666665433333     12346666666666 455432   3344556666666666666 666543


Q ss_pred             HHHHHHHhhcCC-CccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCCC-CChhHHHHHHHHHhhCCCccEEecc
Q 007526          404 AEKIADALKQNR-TITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       404 ~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                      +   ...+..++ +|++|++++|  .+++..   +...+..+++|++|++++|. +++.....    +..+++|++|+++
T Consensus       186 ~---~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~~l~~L~~L~l~  255 (336)
T 2ast_B          186 V---QVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQE----FFQLNYLQHLSLS  255 (336)
T ss_dssp             H---HHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGGG----GGGCTTCCEEECT
T ss_pred             H---HHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHHH----HhCCCCCCEeeCC
Confidence            2   22333455 6666666666  444433   22333445666666666665 55443332    2344566666666


Q ss_pred             Cc-CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          480 WC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       480 ~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                      +| .+++.+...    +.++++|++|++++| +++.+...+...       ++.|++++|++++.
T Consensus       256 ~~~~~~~~~~~~----l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~  308 (336)
T 2ast_B          256 RCYDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTI  308 (336)
T ss_dssp             TCTTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCT
T ss_pred             CCCCCCHHHHHH----HhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccc
Confidence            66 344433322    233466666666666 555444433322       44455566665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=3.2e-25  Score=224.44  Aligned_cols=275  Identities=19%  Similarity=0.212  Sum_probs=129.4

Q ss_pred             CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526          191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL  270 (600)
Q Consensus       191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l  270 (600)
                      +++.++++++.++.     ++..+  .++|+.|++++|.++...    ...+..+++|++|++++|.++...    +..+
T Consensus        32 ~l~~l~~~~~~l~~-----lp~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEK-----VPKDL--PPDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKIS----PGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCS-----CCCSC--CTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred             CCeEEEecCCCccc-----cCccC--CCCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence            56666666665542     11111  145666666666655431    112334555666666666555421    2223


Q ss_pred             hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526          271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL  350 (600)
Q Consensus       271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  350 (600)
                      ..+++|++|++++|.++..     +..  ..++|++|++++|.++....    ..+..+++                   
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l-----~~~--~~~~L~~L~l~~n~l~~~~~----~~~~~l~~-------------------  146 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKEL-----PEK--MPKTLQELRVHENEITKVRK----SVFNGLNQ-------------------  146 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBC-----CSS--CCTTCCEEECCSSCCCBBCH----HHHTTCTT-------------------
T ss_pred             cCCCCCCEEECCCCcCCcc-----Chh--hcccccEEECCCCcccccCH----hHhcCCcc-------------------
Confidence            3445555555555555321     111  01345555555554443322    12234444                   


Q ss_pred             HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526          351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK  430 (600)
Q Consensus       351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  430 (600)
                                |+.|++++|.+...+.  .+..+..+++|++|++++|.++.     ++..+  .++|++|++++|.++..
T Consensus       147 ----------L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~  207 (330)
T 1xku_A          147 ----------MIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKV  207 (330)
T ss_dssp             ----------CCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEE
T ss_pred             ----------ccEEECCCCcCCccCc--ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCcc
Confidence                      4555555444432111  11234455555555555555543     11111  24566666666655543


Q ss_pred             HHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526          431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG  510 (600)
Q Consensus       431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  510 (600)
                      ..    ..+..+++|++|++++|.+++....    .+..+++|++|++++|.++..     ...+..+++|++|++++|.
T Consensus       208 ~~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          208 DA----ASLKGLNNLAKLGLSFNSISAVDNG----SLANTPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CT----GGGTTCTTCCEEECCSSCCCEECTT----TGGGSTTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSSC
T ss_pred             CH----HHhcCCCCCCEEECCCCcCceeChh----hccCCCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCCc
Confidence            21    2334446666666666665543221    224455666666666666532     1223445666666666666


Q ss_pred             CChHHHHHHHHHH-hhcCccccEEEccCCCCCh
Q 007526          511 LRDEGAKCLAQSF-KVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       511 i~~~~~~~l~~~l-~~~n~~L~~L~ls~n~i~~  542 (600)
                      |++.+...+.... ......++.|++++|.+..
T Consensus       275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCccChhhcCCcccccccccccceEeecCcccc
Confidence            6654433332110 0011456677777776653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=2.6e-24  Score=226.73  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=49.5

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC-CCccEEeccCcCCChhHHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGWCQIGASGAEFVAD  493 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~n~i~~~~~~~l~~  493 (600)
                      ++|++|++++|.++...     ..   .++|++|++++|.++..         ... ++|++|++++|++++...     
T Consensus       277 ~~L~~L~ls~N~l~~l~-----~~---~~~L~~L~l~~N~l~~i---------~~~~~~L~~L~Ls~N~l~~lp~-----  334 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLS-----EL---PPNLYYLNASSNEIRSL---------CDLPPSLEELNVSNNKLIELPA-----  334 (454)
T ss_dssp             TTCCEEECCSSCCSEES-----CC---CTTCCEEECCSSCCSEE---------CCCCTTCCEEECCSSCCSCCCC-----
T ss_pred             CcCCEEECcCCccCccc-----Cc---CCcCCEEECcCCcCCcc---------cCCcCcCCEEECCCCccccccc-----
Confidence            45555555555554411     00   14556666666555431         111 366666666666654321     


Q ss_pred             HHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          494 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       494 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                         .+++|++|++++|.++....     .    .++|++|++++|++++
T Consensus       335 ---~~~~L~~L~L~~N~l~~lp~-----~----l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          335 ---LPPRLERLIASFNHLAEVPE-----L----PQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             ---CCTTCCEEECCSSCCSCCCC-----C----CTTCCEEECCSSCCSS
T ss_pred             ---cCCcCCEEECCCCccccccc-----h----hhhccEEECCCCCCCc
Confidence               13667777777776664221     1    1567777777776665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=7.5e-21  Score=192.75  Aligned_cols=233  Identities=15%  Similarity=0.186  Sum_probs=135.2

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      ++++.|++++|.++.....     +..+++|++|++++|.+++.   .++..+..+++|++|++++|.+++...    ..
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~  137 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIV----NT  137 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHH----HH
T ss_pred             ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHH----HH
Confidence            4555555555544432111     22345666666666666532   234445556666666666666654433    33


Q ss_pred             hhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCC-CCcEEEccCC--CCC
Q 007526          326 LEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCK-SLLWINLYMN--DIG  400 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~  400 (600)
                      +..+++|++|++++| .+++.++..+...+    ++|++|++++| .+++.+   ++..+..++ +|++|++++|  .++
T Consensus       138 l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~----~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~  210 (336)
T 2ast_B          138 LAKNSNLVRLNLSGCSGFSEFALQTLLSSC----SRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQ  210 (336)
T ss_dssp             HTTCTTCSEEECTTCBSCCHHHHHHHHHHC----TTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSC
T ss_pred             HhcCCCCCEEECCCCCCCCHHHHHHHHhcC----CCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCC
Confidence            445667777777776 56655554443332    36777777777 666543   344456677 7777777777  566


Q ss_pred             hHHHHHHHHHhhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEec
Q 007526          401 DEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKL  478 (600)
Q Consensus       401 ~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l  478 (600)
                      +.+   ++..+..+++|++|++++|. +++....    .+..+++|++|++++| .+++.+..    .+..+++|++|++
T Consensus       211 ~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l  279 (336)
T 2ast_B          211 KSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLL----ELGEIPTLKTLQV  279 (336)
T ss_dssp             HHH---HHHHHHHCTTCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGG----GGGGCTTCCEEEC
T ss_pred             HHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHH----HHhcCCCCCEEec
Confidence            543   33344456777777777777 5554333    3445577777777777 45554432    2345677888888


Q ss_pred             cCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526          479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG  515 (600)
Q Consensus       479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  515 (600)
                      ++| +++.....+...      ++.|++++|.+++..
T Consensus       280 ~~~-i~~~~~~~l~~~------l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          280 FGI-VPDGTLQLLKEA------LPHLQINCSHFTTIA  309 (336)
T ss_dssp             TTS-SCTTCHHHHHHH------STTSEESCCCSCCTT
T ss_pred             cCc-cCHHHHHHHHhh------CcceEEecccCcccc
Confidence            777 666555544432      444557777777643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=3.5e-23  Score=211.52  Aligned_cols=286  Identities=16%  Similarity=0.136  Sum_probs=147.7

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD  240 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  240 (600)
                      ++.....+++++.++.     ++..+  .++|++|++++|.++....    ..+..+++|++|++++|.++..    ...
T Consensus        30 C~~~~~c~~~~~~l~~-----iP~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~   94 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-----IPSGL--TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTI----EED   94 (353)
T ss_dssp             ECTTSEEECCSTTCSS-----CCTTC--CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEE----CTT
T ss_pred             CCCCeEeeCCCCCccc-----ccccc--cccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCcc----CHh
Confidence            4555556666666654     22211  2466666666666553211    1234455666666666655542    112


Q ss_pred             HHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHH
Q 007526          241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN  320 (600)
Q Consensus       241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  320 (600)
                      .+..+++|++|++++|+++....    ..+..+++|++|++++|.++                            ..+..
T Consensus        95 ~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~----------------------------~l~~~  142 (353)
T 2z80_A           95 SFSSLGSLEHLDLSYNYLSNLSS----SWFKPLSSLTFLNLLGNPYK----------------------------TLGET  142 (353)
T ss_dssp             TTTTCTTCCEEECCSSCCSSCCH----HHHTTCTTCSEEECTTCCCS----------------------------SSCSS
T ss_pred             hcCCCCCCCEEECCCCcCCcCCH----hHhCCCccCCEEECCCCCCc----------------------------ccCch
Confidence            23344555555555555544211    12333455555555555543                            21110


Q ss_pred             HHHHHhhcCCCCCEEEccCC-CCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526          321 ALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI  399 (600)
Q Consensus       321 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  399 (600)
                         ..+..+++|++|++++| .++......+     ...++|++|++++|.++..    .+..+..+++|++|++++|.+
T Consensus       143 ---~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          143 ---SLFSHLTKLQILRVGNMDTFTKIQRKDF-----AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             ---CSCTTCTTCCEEEEEESSSCCEECTTTT-----TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCS
T ss_pred             ---hhhccCCCCcEEECCCCccccccCHHHc-----cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCcc
Confidence               01334455555555555 2332111111     1233566666666655542    233455566666666666666


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEecc
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG  479 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~  479 (600)
                      +....    ..+..+++|++|++++|.++......+.. ...+..++.++++++.+++.+...+...+..+++|++|+++
T Consensus       211 ~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          211 ILLLE----IFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             TTHHH----HHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             ccchh----hhhhhcccccEEECCCCcccccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence            54211    11223566666666666665432222211 22346677777777777777777777777777778888888


Q ss_pred             CcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       480 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                      +|+++.....    .+..+++|++|++++|.++..
T Consensus       286 ~N~l~~i~~~----~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          286 RNQLKSVPDG----IFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             SSCCCCCCTT----TTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCCccCHH----HHhcCCCCCEEEeeCCCccCc
Confidence            7777654332    234557888888888877754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=8.8e-25  Score=221.37  Aligned_cols=245  Identities=18%  Similarity=0.166  Sum_probs=112.1

Q ss_pred             CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007526          163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL  242 (600)
Q Consensus       163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  242 (600)
                      +++.++++++.+..     ++..+  .+++++|++++|.++....    ..+..+++|++|++++|.++..    .+..+
T Consensus        34 ~l~~l~~~~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-----VPKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKI----HEKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSS-----CCSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred             cCCEEECCCCCccc-----cCCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence            35666776666543     12111  2466666666666553211    2234556666666666666543    12334


Q ss_pred             hhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      ..+++|++|++++|+++..     +..+  .++|++|++++|.++...    ...+..+++|++|++++|.++..+..  
T Consensus        99 ~~l~~L~~L~L~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~--  165 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEI-----PPNL--PSSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLENSGFE--  165 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSC-----CSSC--CTTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred             hCcCCCCEEECCCCcCCcc-----Cccc--cccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccccCCCC--
Confidence            4456666666666665531     1111  145666666666554211    11233455555555555555432110  


Q ss_pred             HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChH
Q 007526          323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE  402 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  402 (600)
                      +..+..+ +|++|++++|.++..     ...+   .++|++|++++|.++..    .+..+..+++|++|++++|.+++.
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~l-----~~~~---~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTGI-----PKDL---PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSSC-----CSSS---CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             cccccCC-ccCEEECcCCCCCcc-----Cccc---cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence            1122223 555555555554431     1111   12455555555555442    112234444555555555544432


Q ss_pred             HHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                          ....+..+++|++|++++|.++.     ++..+..+++|++|++++|+|+.
T Consensus       233 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          233 ----ENGSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             ----CTTGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCB
T ss_pred             ----ChhHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCc
Confidence                11123334445555555544442     22223334444444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.85  E-value=2.7e-25  Score=225.15  Aligned_cols=272  Identities=16%  Similarity=0.138  Sum_probs=153.2

Q ss_pred             CccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHH
Q 007526          191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL  270 (600)
Q Consensus       191 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l  270 (600)
                      +++.++++++.++..     +..+  .++|++|++++|.++...    ...+..+++|++|++++|+++...    +..+
T Consensus        34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELR----KDDFKGLQHLYALVLVNNKISKIH----EKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGS
T ss_pred             cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccC----HhHhhCCCCCcEEECCCCccCccC----HhHh
Confidence            678888888876522     2111  257888888888877541    234556688888888888877642    2334


Q ss_pred             hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHH
Q 007526          271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL  350 (600)
Q Consensus       271 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  350 (600)
                      ..+++|++|++++|.++.     ++..+  .++|++|++++|.++..+.    ..+..+++|++|++++|.++..+..  
T Consensus        99 ~~l~~L~~L~L~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~--  165 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVE-----IPPNL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGFE--  165 (332)
T ss_dssp             TTCTTCCEEECCSSCCCS-----CCSSC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred             hCcCCCCEEECCCCcCCc-----cCccc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCCC--
Confidence            556788888888887753     22211  2678888888877765432    2355677777888877777542111  


Q ss_pred             HHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH
Q 007526          351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK  430 (600)
Q Consensus       351 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  430 (600)
                      ...+ ... +|+.|++++|.++.     ++..+  .++|++|++++|.+++.    .+..+..+++|++|++++|.++..
T Consensus       166 ~~~~-~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          166 PGAF-DGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             TTSS-CSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             cccc-cCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence            1111 122 57777777776665     22211  25666777777666553    122344556666666666666553


Q ss_pred             HHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHH--hhCCCccEEEccC
Q 007526          431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML--RYNNTISILDLRA  508 (600)
Q Consensus       431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~  508 (600)
                      ..    ..+..+++|++|++++|.++..     ...+..+++|++|++++|.|+..+...+....  ...+.|+.|++++
T Consensus       233 ~~----~~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          233 EN----GSLSFLPTLRELHLDNNKLSRV-----PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             CT----TGGGGCTTCCEEECCSSCCCBC-----CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             Ch----hHhhCCCCCCEEECCCCcCeec-----ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence            21    2234446666666666655522     12234455566666666655554433322210  0123455555555


Q ss_pred             CCCC
Q 007526          509 NGLR  512 (600)
Q Consensus       509 n~i~  512 (600)
                      |.+.
T Consensus       304 N~~~  307 (332)
T 2ft3_A          304 NPVP  307 (332)
T ss_dssp             SSSC
T ss_pred             Cccc
Confidence            5444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.85  E-value=3e-23  Score=218.56  Aligned_cols=222  Identities=17%  Similarity=0.154  Sum_probs=113.1

Q ss_pred             CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526          274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG  353 (600)
Q Consensus       274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  353 (600)
                      ++|++|++++|.+++     ++ .+..+++|++|++++|.++..+.        ...+|++|++++|.+++..      .
T Consensus       131 ~~L~~L~L~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~lp~--------~~~~L~~L~L~~n~l~~l~------~  190 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-----LP-ELQNSSFLKIIDVDNNSLKKLPD--------LPPSLEFIAAGNNQLEELP------E  190 (454)
T ss_dssp             TTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSSCC------C
T ss_pred             CCCCEEECcCCCCCC-----Cc-ccCCCCCCCEEECCCCcCcccCC--------CcccccEEECcCCcCCcCc------c
Confidence            345555555555542     12 24445555555555555443211        1235555555555554311      1


Q ss_pred             hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526          354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      + ...++|++|++++|.++.     ++.   ..++|++|++++|.+..     ++ .+..+++|++|++++|+++..   
T Consensus       191 ~-~~l~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~l---  252 (454)
T 1jl5_A          191 L-QNLPFLTAIYADNNSLKK-----LPD---LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKTL---  252 (454)
T ss_dssp             C-TTCTTCCEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSSC---
T ss_pred             c-cCCCCCCEEECCCCcCCc-----CCC---CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCcc---
Confidence            1 223355555555555543     111   12355666666665553     22 244556666666666665541   


Q ss_pred             HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                        +.   ..++|++|++++|.++...        ...++|++|++++|.+++...        -.++|++|++++|.+++
T Consensus       253 --~~---~~~~L~~L~l~~N~l~~l~--------~~~~~L~~L~ls~N~l~~l~~--------~~~~L~~L~l~~N~l~~  311 (454)
T 1jl5_A          253 --PD---LPPSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIFSGLSE--------LPPNLYYLNASSNEIRS  311 (454)
T ss_dssp             --CS---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSEESC--------CCTTCCEEECCSSCCSE
T ss_pred             --cc---cccccCEEECCCCcccccC--------cccCcCCEEECcCCccCcccC--------cCCcCCEEECcCCcCCc
Confidence              11   1255666666666655321        112466777777776655311        01567777777777665


Q ss_pred             HHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526          514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF  573 (600)
Q Consensus       514 ~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~  573 (600)
                      ..     .    ..++|++|++++|++++....     +   +  .|++|++++|.++..
T Consensus       312 i~-----~----~~~~L~~L~Ls~N~l~~lp~~-----~---~--~L~~L~L~~N~l~~l  352 (454)
T 1jl5_A          312 LC-----D----LPPSLEELNVSNNKLIELPAL-----P---P--RLERLIASFNHLAEV  352 (454)
T ss_dssp             EC-----C----CCTTCCEEECCSSCCSCCCCC-----C---T--TCCEEECCSSCCSCC
T ss_pred             cc-----C----CcCcCCEEECCCCcccccccc-----C---C--cCCEEECCCCccccc
Confidence            21     1    114688888888877752211     1   1  367777777766643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=4e-21  Score=208.68  Aligned_cols=268  Identities=17%  Similarity=0.144  Sum_probs=186.2

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      .++++|+++++.++.     ++..+  .++|++|++++|.++.     ++.   .+++|++|+|++|+++..     +. 
T Consensus        40 ~~l~~L~ls~n~L~~-----lp~~l--~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~-   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTT-----LPDCL--PAHITTLVIPDNNLTS-----LPA---LPPELRTLEVSGNQLTSL-----PV-   98 (622)
T ss_dssp             HCCCEEECCSSCCSC-----CCSCC--CTTCSEEEECSCCCSC-----CCC---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred             CCCcEEEecCCCcCc-----cChhh--CCCCcEEEecCCCCCC-----CCC---cCCCCCEEEcCCCcCCcC-----CC-
Confidence            458899999998875     33323  2789999999998763     221   357899999999988752     22 


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                        .+++|++|++++|+++..     +.   ..++|++|++++|.++.     ++.   .+++|++|++++|.++..+.  
T Consensus        99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~~--  158 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA--  158 (622)
T ss_dssp             --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred             --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCCCcCC--
Confidence              458899999999888763     22   35788889998888854     221   24788888888888765321  


Q ss_pred             HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526          322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  401 (600)
                            ..++|+.|++++|.++...         ...++|+.|++++|.++.     ++   ...++|+.|++++|.++.
T Consensus       159 ------~~~~L~~L~L~~N~l~~l~---------~~~~~L~~L~Ls~N~l~~-----l~---~~~~~L~~L~L~~N~l~~  215 (622)
T 3g06_A          159 ------LPSELCKLWAYNNQLTSLP---------MLPSGLQELSVSDNQLAS-----LP---TLPSELYKLWAYNNRLTS  215 (622)
T ss_dssp             ------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSS
T ss_pred             ------ccCCCCEEECCCCCCCCCc---------ccCCCCcEEECCCCCCCC-----CC---CccchhhEEECcCCcccc
Confidence                  3467888888888877622         233478888888888776     33   134678888888887775


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526          402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC  481 (600)
Q Consensus       402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  481 (600)
                           ++.   ..++|++|++++|.++...        ..+++|++|+|++|.|+....        .+++|++|++++|
T Consensus       216 -----l~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N  271 (622)
T 3g06_A          216 -----LPA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN  271 (622)
T ss_dssp             -----CCC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred             -----cCC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence                 221   2467888888888877622        234778888888887764321        4567888888888


Q ss_pred             CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS  522 (600)
Q Consensus       482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  522 (600)
                      .|+..+     ..+..+++|+.|+|++|.+++..+..+...
T Consensus       272 ~L~~lp-----~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          272 QLTRLP-----ESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCCSCC-----GGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCCcCC-----HHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            877442     235566888888888888887777766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=4e-21  Score=208.68  Aligned_cols=285  Identities=15%  Similarity=0.111  Sum_probs=209.3

Q ss_pred             CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526          190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL  269 (600)
Q Consensus       190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~  269 (600)
                      .+++.|++++|.++.     ++..+.  ++|++|++++|.++..     +.   .+++|++|+|++|+++..     +. 
T Consensus        40 ~~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~l-----p~-   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PV-   98 (622)
T ss_dssp             HCCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCSCC-----CC---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred             CCCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCCCC-----CC---cCCCCCEEEcCCCcCCcC-----CC-
Confidence            468999999998763     222222  6899999999988752     22   458899999999998762     22 


Q ss_pred             HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526          270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA  349 (600)
Q Consensus       270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  349 (600)
                        .+++|++|++++|.++.-     +.   .+++|+.|++++|.++..+.        .+++|++|++++|.++...   
T Consensus        99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~l~---  157 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASLP---  157 (622)
T ss_dssp             --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCC---
T ss_pred             --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCCC--------CCCCCCEEECcCCcCCCcC---
Confidence              468899999999988642     22   46889999999998876432        3578999999999887521   


Q ss_pred             HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                            ...++|+.|++++|.++.     ++   ..+++|++|++++|.+++     ++.   ..++|+.|++++|.++.
T Consensus       158 ------~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~  215 (622)
T 3g06_A          158 ------ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS  215 (622)
T ss_dssp             ------CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred             ------CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence                  123479999999999887     44   457889999999998876     222   24789999999999876


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC
Q 007526          430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN  509 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  509 (600)
                      ..     .   ..++|++|++++|.|+...        ..+++|++|++++|.|+..+.        .+++|+.|+|++|
T Consensus       216 l~-----~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N  271 (622)
T 3g06_A          216 LP-----A---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN  271 (622)
T ss_dssp             CC-----C---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred             cC-----C---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence            32     1   2378999999999887642        346789999999999886543        3588999999999


Q ss_pred             CCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCc-ccceeEEEccCC
Q 007526          510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE-DVAVTSLNLANN  568 (600)
Q Consensus       510 ~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~-~~~L~~L~l~~n  568 (600)
                      .|+.. +..+...     ++|+.|+|++|++++..+..+..+..... .-.+..++++++
T Consensus       272 ~L~~l-p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~  325 (622)
T 3g06_A          272 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA  325 (622)
T ss_dssp             CCCSC-CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC
T ss_pred             CCCcC-CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCC
Confidence            98854 2223332     78999999999999888888777655321 112445555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=2.1e-23  Score=209.14  Aligned_cols=87  Identities=13%  Similarity=0.206  Sum_probs=37.9

Q ss_pred             CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccC-CCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHH
Q 007526          190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE  268 (600)
Q Consensus       190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~  268 (600)
                      .++++|+|++|.++..  ..++..+..+++|++|++++ |.+...    ++..+..+++|++|++++|.++..    ++.
T Consensus        50 ~~l~~L~L~~~~l~~~--~~~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGA----IPD  119 (313)
T ss_dssp             CCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEE----CCG
T ss_pred             ceEEEEECCCCCccCC--cccChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCc----CCH
Confidence            3556666666555410  01222344455555555553 444322    223334445555555555544421    122


Q ss_pred             HHhcCCCccEEeecCCCC
Q 007526          269 LLKNNSILRVLELNNNMI  286 (600)
Q Consensus       269 ~l~~~~~L~~L~L~~n~i  286 (600)
                      .+..+++|++|++++|.+
T Consensus       120 ~~~~l~~L~~L~Ls~N~l  137 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNAL  137 (313)
T ss_dssp             GGGGCTTCCEEECCSSEE
T ss_pred             HHhCCCCCCEEeCCCCcc
Confidence            233334444444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.81  E-value=7.2e-24  Score=212.53  Aligned_cols=228  Identities=18%  Similarity=0.187  Sum_probs=116.6

Q ss_pred             CCcCEEEeecCCCCh--HHHHHHHHHHhcCCCccEEeecC-CCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          246 AGVERLQLSSVDLRD--EGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL  322 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l  322 (600)
                      .++++|++++|.++.  .    ++..+.++++|++|++++ |.+++    .++..+..+++|++|++++|.++...    
T Consensus        50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~----  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAI----  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEEC----
T ss_pred             ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcC----
Confidence            567888888887764  2    234455667788888874 66642    23444556677777777777665211    


Q ss_pred             HHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCC-CCcEEEccCCCCCh
Q 007526          323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGD  401 (600)
Q Consensus       323 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~  401 (600)
                      +..+..+++|++|++++|.+++..    ...+ ...++|++|++++|.++..    ++..+..++ +|++|++++|.++.
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTL----PPSI-SSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCC----CGGG-GGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcC----ChHH-hcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeec
Confidence            133456666777777666654321    1111 1233566666666665532    344445554 56666666665543


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526          402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC  481 (600)
Q Consensus       402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  481 (600)
                      .    ++..+..++ |++|++++|.++..    ++..+..+++|++|++++|.++.....     +..+++|++|++++|
T Consensus       189 ~----~~~~~~~l~-L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          189 K----IPPTFANLN-LAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNN  254 (313)
T ss_dssp             E----CCGGGGGCC-CSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSS
T ss_pred             c----CChHHhCCc-ccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCC
Confidence            2    223333333 55666665555432    222333445555555555554422110     233445555555555


Q ss_pred             CCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          482 QIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      .+++..+.    .+..+++|++|++++|.++
T Consensus       255 ~l~~~~p~----~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          255 RIYGTLPQ----GLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCEECCCG----GGGGCTTCCEEECCSSEEE
T ss_pred             cccCcCCh----HHhcCcCCCEEECcCCccc
Confidence            54433221    1223344555555554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=4.1e-22  Score=200.22  Aligned_cols=172  Identities=23%  Similarity=0.259  Sum_probs=86.6

Q ss_pred             hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526          300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV  379 (600)
Q Consensus       300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  379 (600)
                      .+++|++|++++|.++..         ...++|++|++++|.+++...        ...++|++|++++|.++..    .
T Consensus        78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~  136 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----R  136 (317)
T ss_dssp             TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----G
T ss_pred             hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----c
Confidence            344555555555544321         123455555555555544211        1123566666666665552    1


Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHh-hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      +..+..+++|++|++++|.+++..    +..+ ..+++|++|++++|.++...      ....+++|++|++++|.|+..
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l  206 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFM  206 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEE
T ss_pred             chhhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcc
Confidence            223445556666666666665431    1112 23456666666666665431      111246666666666666543


Q ss_pred             HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ..     .+..+++|++|++++|.++...     ..+..+++|+.|++++|.++
T Consensus       207 ~~-----~~~~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          207 GP-----EFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CG-----GGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCCB
T ss_pred             hh-----hhcccCcccEEECcCCcccchh-----hHhhcCCCCCEEEccCCCcc
Confidence            21     1344556666666666665432     22344566666666666666

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=5.1e-22  Score=199.56  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=26.8

Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                      +++|++|++++|.++...     ..+..+++|++|++++|.|+..     ...+..+++|++|++++|.+.
T Consensus       190 l~~L~~L~Ls~N~l~~l~-----~~~~~l~~L~~L~L~~N~l~~l-----~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAFMG-----PEFQSAAGVTWISLRNNKLVLI-----EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCEEECCSSCCCEEC-----GGGGGGTTCSEEECTTSCCCEE-----CTTCCCCTTCCEEECTTCCCB
T ss_pred             cccCCEEECCCCcCCcch-----hhhcccCcccEEECcCCcccch-----hhHhhcCCCCCEEEccCCCcc
Confidence            344555555555444321     1123335555555555544421     112233445555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.81  E-value=8.8e-23  Score=225.33  Aligned_cols=383  Identities=16%  Similarity=0.124  Sum_probs=232.6

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      +++++|||++|.|+...    ...|..+++|++|+|++|.|+....    +++..+++|++|+|++|+++...    ...
T Consensus        52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~~----~~f~~L~~L~~L~Ls~N~l~~l~----~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSLA----LGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEEC----GGG
T ss_pred             cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCcCCCcCh----hHhcCCCCCCEEEccCCcCCCCC----HHH
Confidence            47999999999998632    3457889999999999999874322    34567899999999999998642    234


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                      +..+++|++|++++|+++....    ..+.++++|++|++++|.++..   .++..+..++.|++|++++|.++......
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             hcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccC---CCchhhccchhhhhhcccCcccccccccc
Confidence            5678999999999999887422    2356679999999999998642   23445667899999999999987654433


Q ss_pred             HHHHhhcCC-CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCC------------
Q 007526          322 LAKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS------------  388 (600)
Q Consensus       322 l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~------------  388 (600)
                      +. .+...+ ....++++.|.++.....     .. ....+..+++.+|......   ....+..+..            
T Consensus       193 l~-~L~~l~~~~~~~~ls~n~l~~i~~~-----~~-~~~~~~~l~l~~n~~~~~~---~~~~~~~l~~l~~~~l~~~~~~  262 (635)
T 4g8a_A          193 LR-VLHQMPLLNLSLDLSLNPMNFIQPG-----AF-KEIRLHKLTLRNNFDSLNV---MKTCIQGLAGLEVHRLVLGEFR  262 (635)
T ss_dssp             GH-HHHTCTTCCCEEECTTCCCCEECTT-----TT-TTCEEEEEEEESCCSSHHH---HHHHHHTTTTCEEEEEEEECCT
T ss_pred             cc-chhhhhhhhhhhhcccCcccccCcc-----cc-cchhhhhhhhhcccccccc---cchhhcCCcccccccccccccc
Confidence            32 233333 456899999988753211     11 1225778899888665432   1222233222            


Q ss_pred             -------------------------------------------------------------------CcEEEccCCCCCh
Q 007526          389 -------------------------------------------------------------------LLWINLYMNDIGD  401 (600)
Q Consensus       389 -------------------------------------------------------------------L~~L~Ls~n~l~~  401 (600)
                                                                                         ++.|++.+|.+..
T Consensus       263 ~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  342 (635)
T 4g8a_A          263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ  342 (635)
T ss_dssp             TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESS
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccC
Confidence                                                                               2333333322111


Q ss_pred             HHHHHH---------------HHHhhcCCCccEEEccCCCCChHHHH--HHH----------------------------
Q 007526          402 EGAEKI---------------ADALKQNRTITTIDLGGNNIHSKGAS--AIA----------------------------  436 (600)
Q Consensus       402 ~~~~~l---------------~~~l~~~~~L~~L~L~~n~l~~~~~~--~l~----------------------------  436 (600)
                      .....+               ......+++|+.|++++|.+...+..  .+.                            
T Consensus       343 ~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L  422 (635)
T 4g8a_A          343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQL  422 (635)
T ss_dssp             CCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTC
T ss_pred             cCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccc
Confidence            000000               00001234555555555554321100  000                            


Q ss_pred             ----------------HHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCC
Q 007526          437 ----------------RVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT  500 (600)
Q Consensus       437 ----------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~  500 (600)
                                      ..+..+++++.+++++|.+....    ...+...+.|++|++++|.+....   ....+..+++
T Consensus       423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~  495 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRN  495 (635)
T ss_dssp             CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTT
T ss_pred             cchhhhhcccccccccccccccccccccccccccccccc----ccccccchhhhhhhhhhccccccc---Cchhhhhccc
Confidence                            00111223333333333332211    112234567777777777532211   1123556699


Q ss_pred             ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHH
Q 007526          501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLF  580 (600)
Q Consensus       501 L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  580 (600)
                      |++|+|++|+|+...+..+...     ++|++|+|++|+|++..+..+..+.      +|++|||++|+++......+..
T Consensus       496 L~~L~Ls~N~L~~l~~~~f~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~~  564 (635)
T 4g8a_A          496 LTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMSHNNFFSLDTFPYKCLN------SLQVLDYSLNHIMTSKKQELQH  564 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTSCCCBCCCGGGTTCT------TCCEEECTTSCCCBCCSSCTTC
T ss_pred             cCEEECCCCccCCcChHHHcCC-----CCCCEEECCCCcCCCCChhHHhCCC------CCCEEECCCCcCCCCCHHHHHh
Confidence            9999999999998765555544     7899999999999976655554333      3999999999998876654422


Q ss_pred             HHHHHHHhhhhhHh
Q 007526          581 FSFLLHQIKSLFHS  594 (600)
Q Consensus       581 ~~~l~~~l~~l~~~  594 (600)
                         +...++.|+++
T Consensus       565 ---l~~~L~~L~L~  575 (635)
T 4g8a_A          565 ---FPSSLAFLNLT  575 (635)
T ss_dssp             ---CCTTCCEEECT
T ss_pred             ---hhCcCCEEEee
Confidence               22345555553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1.1e-22  Score=203.56  Aligned_cols=253  Identities=15%  Similarity=0.164  Sum_probs=141.9

Q ss_pred             cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526          248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE  327 (600)
Q Consensus       248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  327 (600)
                      -+.++.+++.++..     +..+  .++|++|++++|.++...    ...+..+++|++|++++|.++..+..  +..+.
T Consensus         9 ~~~l~c~~~~l~~i-----p~~~--~~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~   75 (306)
T 2z66_A            9 GTEIRCNSKGLTSV-----PTGI--PSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDF   75 (306)
T ss_dssp             TTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEE--EHHHH
T ss_pred             CCEEEcCCCCcccC-----CCCC--CCCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCc--ccccc
Confidence            35677777766652     2111  256888888888775321    12245677777777777777643200  01223


Q ss_pred             cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHH
Q 007526          328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI  407 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  407 (600)
                      .+++|++|++++|.+...     ...+ ...++|++|++++|.++....   ...+..+++|++|++++|.+...    .
T Consensus        76 ~~~~L~~L~Ls~n~i~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~  142 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITM-----SSNF-LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----F  142 (306)
T ss_dssp             SCSCCCEEECCSCSEEEE-----EEEE-ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----S
T ss_pred             cccccCEEECCCCccccC-----hhhc-CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----c
Confidence            567777777777776531     1111 234467777777776655210   02355667777777777766543    2


Q ss_pred             HHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhH
Q 007526          408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG  487 (600)
Q Consensus       408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~  487 (600)
                      ...+..+++|++|++++|.+++..   ++..+..+++|++|++++|.+++...    ..+..+++|++|++++|.+++..
T Consensus       143 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          143 NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCC
T ss_pred             hhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccC
Confidence            334555667777777777665410   22334455677777777776655422    22344566777777777666543


Q ss_pred             HHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       488 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      ...    +..+++|++|++++|.+++..+..+...    .++|++|++++|+++
T Consensus       216 ~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          216 TFP----YKCLNSLQVLDYSLNHIMTSKKQELQHF----PSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SGG----GTTCTTCCEEECTTSCCCBCSSSSCCCC----CTTCCEEECTTCCEE
T ss_pred             hhh----ccCcccCCEeECCCCCCcccCHHHHHhh----hccCCEEEccCCCee
Confidence            322    3344667777777776665433322221    135666666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.78  E-value=6.8e-22  Score=198.15  Aligned_cols=122  Identities=19%  Similarity=0.129  Sum_probs=53.2

Q ss_pred             cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHH
Q 007526          328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI  407 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l  407 (600)
                      .+++|++|++++|.+++. ...+........++|++|++++|.++..    .+..+..+++|++|++++|++.+..  .+
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~--~~  191 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPELGER--GL  191 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTTCHHH--HH
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCcCcch--HH
Confidence            445555555555555443 1111110000113555555555555542    1133445555666666655544321  11


Q ss_pred             HHHh--hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          408 ADAL--KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       408 ~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                      +..+  ..+++|++|++++|.++..+. .....+..+++|++|++++|.+++
T Consensus       192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          192 ISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             HHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             HHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCc
Confidence            2222  345555555555555553211 011222334555555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.4e-20  Score=188.34  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=17.9

Q ss_pred             CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                      ++|++|+|++|+|+...      .+..+++|++|++++|.+++
T Consensus       272 ~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          272 AKLRVLDLSSNRLNRAP------QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCSCEECCSCCCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred             CCCCEEECCCCcCCCCc------hhhhCCCccEEECcCCCCCC
Confidence            45555555555554321      02334555555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=4.8e-21  Score=193.15  Aligned_cols=233  Identities=13%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526          218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA  297 (600)
Q Consensus       218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  297 (600)
                      +++++|+|++|.++.     ++..+..+++|++|+|++|.++.     ++..+..+++|++|++++|.++     .++..
T Consensus        81 ~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~-----~lp~~  145 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLR-----ALPAS  145 (328)
T ss_dssp             TTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCC-----CCCGG
T ss_pred             cceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCccc-----cCcHH
Confidence            567777777776653     33444455666666666666653     2233344466666666666553     22333


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHH
Q 007526          298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF  377 (600)
Q Consensus       298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~  377 (600)
                      +..+++|++|++++|.+....    +      ..+....+.+.             + ...++|++|++++|.++.    
T Consensus       146 l~~l~~L~~L~L~~n~~~~~~----p------~~~~~~~~~~~-------------~-~~l~~L~~L~L~~n~l~~----  197 (328)
T 4fcg_A          146 IASLNRLRELSIRACPELTEL----P------EPLASTDASGE-------------H-QGLVNLQSLRLEWTGIRS----  197 (328)
T ss_dssp             GGGCTTCCEEEEEEETTCCCC----C------SCSEEEC-CCC-------------E-EESTTCCEEEEEEECCCC----
T ss_pred             HhcCcCCCEEECCCCCCcccc----C------hhHhhccchhh-------------h-ccCCCCCEEECcCCCcCc----
Confidence            444555555555554321100    0      00111100000             0 112355566666655553    


Q ss_pred             HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                       ++..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+...    ++..+..+++|++|+|++|.+..
T Consensus       198 -lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~  267 (328)
T 4fcg_A          198 -LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLL  267 (328)
T ss_dssp             -CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCC
T ss_pred             -chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchh
Confidence             44445556666666666665554     233344555666666666554432    22233444555555555554432


Q ss_pred             hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526          458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL  511 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  511 (600)
                      .    +...+..+++|++|++++|.+.+.-+.    .+.++++|+.+++..+.+
T Consensus       268 ~----~p~~~~~l~~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          268 T----LPLDIHRLTQLEKLDLRGCVNLSRLPS----LIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             B----CCTTGGGCTTCCEEECTTCTTCCCCCG----GGGGSCTTCEEECCGGGS
T ss_pred             h----cchhhhcCCCCCEEeCCCCCchhhccH----HHhhccCceEEeCCHHHH
Confidence            2    111234445555555555544443222    233335555555554433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=1e-20  Score=189.50  Aligned_cols=108  Identities=18%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             cccEEECcCCCCChhhHHHHH-HHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          360 KLAVLDIGNNSISAKGAFHVA-EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      +|++|++++|.++..+  .++ ..+..+++|++|++++|.+++...   ...+..+++|++|++++|.++.     ++..
T Consensus       202 ~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~  271 (312)
T 1wwl_A          202 TLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSHNSLRDAAG---APSCDWPSQLNSLNLSFTGLKQ-----VPKG  271 (312)
T ss_dssp             TCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTTSCCCSSCC---CSCCCCCTTCCEEECTTSCCSS-----CCSS
T ss_pred             CCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCCCcCCcccc---hhhhhhcCCCCEEECCCCccCh-----hhhh
Confidence            4555555555554211  011 223344555555555555544210   0112224556666666665552     2222


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                      +.  ++|++|++++|+|++..     . +..+++|++|++++|.+++
T Consensus       272 ~~--~~L~~L~Ls~N~l~~~p-----~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNRLDRNP-----S-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CC--SEEEEEECCSSCCCSCC-----C-TTTSCEEEEEECTTCTTTC
T ss_pred             cc--CCceEEECCCCCCCCCh-----h-HhhCCCCCEEeccCCCCCC
Confidence            22  45666666666655431     1 3445566666666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=1.5e-21  Score=205.60  Aligned_cols=248  Identities=17%  Similarity=0.126  Sum_probs=168.9

Q ss_pred             CcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL  326 (600)
Q Consensus       247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  326 (600)
                      ....++.++..++.     ++..+  .++++.|+|++|.++...    ...+..+++|++|+|++|.++....    ..+
T Consensus        44 ~~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~  108 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF  108 (440)
T ss_dssp             TSCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred             CCCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence            45678888877765     22222  267899999999886432    2445678889999999998876543    346


Q ss_pred             hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHHHH
Q 007526          327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE  405 (600)
Q Consensus       327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~  405 (600)
                      ..+++|++|++++|.++.....     .....++|++|++++|.++..    .+..+..+++|++|++++| .+...   
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i---  176 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPNG-----AFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI---  176 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCTT-----TSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred             cCCccCCEEECCCCcCCeeCHh-----HhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence            6788899999998888753211     113455888888888888763    2234667888888888875 44432   


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                       -...+..+++|++|++++|.++...      .+..+++|++|+|++|.|+....    ..+..+++|++|++++|.++.
T Consensus       177 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          177 -SEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             -CTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred             -CcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence             1124556788888888888887532      24556788888888888776432    234566788888888888877


Q ss_pred             hHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      .....    +..+++|++|+|++|.|+......+...     ++|++|+|++|.+.
T Consensus       246 ~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          246 IERNA----FDNLQSLVEINLAHNNLTLLPHDLFTPL-----HHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTS----STTCTTCCEEECTTSCCCCCCTTTTSSC-----TTCCEEECCSSCEE
T ss_pred             EChhh----hcCCCCCCEEECCCCCCCccChhHhccc-----cCCCEEEcCCCCcc
Confidence            65543    3445888888888888776544333322     67888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.77  E-value=1.3e-20  Score=190.04  Aligned_cols=155  Identities=19%  Similarity=0.239  Sum_probs=96.3

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      ..+++++|+|++|.+..     ++..+..+++|++|+|++|.++.     ++..+..+++|++|+|++|.++.     ++
T Consensus        79 ~~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp  143 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-----LP  143 (328)
T ss_dssp             TSTTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-----CC
T ss_pred             cccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-----Cc
Confidence            35788899999988874     45556667888888888888762     33445667888888888888773     45


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHH---------hcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEcc
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELL---------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN  310 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l---------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~  310 (600)
                      ..+..+++|++|++++|++...    ++..+         ..+++|++|++++|.++     .++..+..+++|++|+++
T Consensus       144 ~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~  214 (328)
T 4fcg_A          144 ASIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIR  214 (328)
T ss_dssp             GGGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEE
T ss_pred             HHHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEcc
Confidence            5667778888888888754432    11111         12456666666666653     223334455556666666


Q ss_pred             CCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007526          311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIG  343 (600)
Q Consensus       311 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  343 (600)
                      +|.++...     ..+..+++|++|++++|.+.
T Consensus       215 ~N~l~~l~-----~~l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          215 NSPLSALG-----PAIHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             SSCCCCCC-----GGGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCcCc-----hhhccCCCCCEEECcCCcch
Confidence            55554321     23444555555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.77  E-value=1.6e-17  Score=152.43  Aligned_cols=137  Identities=24%  Similarity=0.224  Sum_probs=82.8

Q ss_pred             HHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                      +...+..+++|++|+|++| .+++.|+..+..++..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4455555566666666666 666666666666665556666666666666666666666666655666666666666666


Q ss_pred             hHHHHHHHHHhhCCCccEEec--cCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526          458 DGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG  515 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  515 (600)
                      .+...++..+..+++|++|++  ++|.|++.+...+++.+..+++|++|+|++|.|++.+
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            666666666555556666666  5566666666666666666666666666666555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=6.9e-21  Score=200.46  Aligned_cols=248  Identities=16%  Similarity=0.165  Sum_probs=189.1

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL  298 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  298 (600)
                      ..+.++.++..++.     ++..+  .++++.|+|++|+++....    ..+.++++|++|+|++|.++...    +..+
T Consensus        44 ~~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~----~~~~  108 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-----VPDGI--STNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIE----IGAF  108 (440)
T ss_dssp             TSCEEECCSCCCSS-----CCSCC--CTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEEC----GGGG
T ss_pred             CCCEEEeCCCCcCc-----CCCCC--CCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccC----hhhc
Confidence            46789988887765     33322  2679999999999987533    33556799999999999997532    3456


Q ss_pred             hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHH
Q 007526          299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAF  377 (600)
Q Consensus       299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~  377 (600)
                      ..+++|++|+|++|.++....    ..+..+++|++|++++|.++......+     ...++|+.|++++| .+...   
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~~~-----~~l~~L~~L~l~~~~~l~~i---  176 (440)
T 3zyj_A          109 NGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESIPSYAF-----NRIPSLRRLDLGELKRLSYI---  176 (440)
T ss_dssp             TTCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCEECTTTT-----TTCTTCCEEECCCCTTCCEE---
T ss_pred             cCCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCcccccCHHHh-----hhCcccCEeCCCCCCCccee---
Confidence            678999999999999886543    346688999999999999886422111     34568999999995 44442   


Q ss_pred             HHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                       -...+..+++|++|++++|.+++.     + .+..+++|++|++++|.++....    ..+..+++|++|+|++|.|+.
T Consensus       177 -~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~  245 (440)
T 3zyj_A          177 -SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV  245 (440)
T ss_dssp             -CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred             -CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence             112467899999999999998863     2 36678999999999999987533    446667999999999999987


Q ss_pred             hHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ...    ..+..+++|++|++++|+++......    +..+++|+.|+|++|.+.
T Consensus       246 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          246 IER----NAFDNLQSLVEINLAHNNLTLLPHDL----FTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECT----TSSTTCTTCCEEECTTSCCCCCCTTT----TSSCTTCCEEECCSSCEE
T ss_pred             ECh----hhhcCCCCCCEEECCCCCCCccChhH----hccccCCCEEEcCCCCcc
Confidence            643    23456789999999999998775543    445699999999999765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=6.1e-21  Score=201.56  Aligned_cols=247  Identities=18%  Similarity=0.125  Sum_probs=162.0

Q ss_pred             cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526          248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE  327 (600)
Q Consensus       248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  327 (600)
                      ...++.++..++.     ++..+  .++|++|+|++|.++...    +..+..+++|++|++++|.++....    ..+.
T Consensus        56 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN  120 (452)
T ss_dssp             SCEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred             CcEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence            4556666665554     22111  167899999999886432    3455678889999999988876543    3456


Q ss_pred             cCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC-CCChHHHHH
Q 007526          328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK  406 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~  406 (600)
                      .+++|++|++++|.++....     ......++|++|++++|.++..    ....+..+++|++|++++| .+...    
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i----  187 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPS-----GAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYI----  187 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCT-----TTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE----
T ss_pred             CcccCCEEECCCCcCCccCh-----hhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCcccc----
Confidence            78889999999888875321     1113455788888888888763    2234667888888888874 44432    


Q ss_pred             HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526          407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS  486 (600)
Q Consensus       407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~  486 (600)
                      -...+..+++|++|++++|.++...      .+..+++|++|+|++|.|+....    ..+..+++|++|++++|.++..
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEE
T ss_pred             ChhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceE
Confidence            1123556778888888888877531      24556788888888887765432    2345667788888888877766


Q ss_pred             HHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      ....    +..+++|++|+|++|.|+......+...     ++|++|+|++|.+.
T Consensus       258 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          258 ERNA----FDGLASLVELNLAHNNLSSLPHDLFTPL-----RYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTT----TTTCTTCCEEECCSSCCSCCCTTSSTTC-----TTCCEEECCSSCEE
T ss_pred             CHHH----hcCCCCCCEEECCCCcCCccChHHhccc-----cCCCEEEccCCCcC
Confidence            5433    3445778888888887776443333222     66777777777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=2.2e-20  Score=184.65  Aligned_cols=226  Identities=17%  Similarity=0.123  Sum_probs=162.5

Q ss_pred             ccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhh
Q 007526          276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS  355 (600)
Q Consensus       276 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  355 (600)
                      -++++.+++.++.     ++.  ...++|++|++++|.++....    ..+..+++|++|++++|.+++.....+     
T Consensus        13 ~~~~~c~~~~l~~-----ip~--~~~~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-----   76 (285)
T 1ozn_A           13 KVTTSCPQQGLQA-----VPV--GIPAASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAF-----   76 (285)
T ss_dssp             SCEEECCSSCCSS-----CCT--TCCTTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----
T ss_pred             CeEEEcCcCCccc-----CCc--CCCCCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCHhhc-----
Confidence            3678888887753     222  124689999999998877553    345678899999999998876422222     


Q ss_pred             cCCCcccEEECcCCC-CChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526          356 SRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA  434 (600)
Q Consensus       356 ~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  434 (600)
                      ...++|++|++++|. ++..    .+..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.++....  
T Consensus        77 ~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~--  146 (285)
T 1ozn_A           77 TGLALLEQLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPD--  146 (285)
T ss_dssp             TTCTTCCEEECCSCTTCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred             CCccCCCEEeCCCCCCcccc----CHHHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCH--
Confidence            244589999999986 6663    244567788999999999988763    23456678889999999998876432  


Q ss_pred             HHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                        ..+..+++|++|++++|.++.....    .+..+++|++|++++|.+++..+..    +..+++|++|++++|.+++.
T Consensus       147 --~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          147 --DTFRDLGNLTHLFLHGNRISSVPER----AFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             --TTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCC
T ss_pred             --hHhccCCCccEEECCCCcccccCHH----HhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcC
Confidence              2355568899999999988754322    2356778999999999888765443    34558899999999988876


Q ss_pred             HHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          515 GAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       515 ~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                      ....+...     ++|++|++++|++..
T Consensus       217 ~~~~~~~l-----~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          217 PTEALAPL-----RALQYLRLNDNPWVC  239 (285)
T ss_dssp             CHHHHTTC-----TTCCEEECCSSCEEC
T ss_pred             CHHHcccC-----cccCEEeccCCCccC
Confidence            65555443     778899999988763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2.1e-20  Score=197.54  Aligned_cols=247  Identities=17%  Similarity=0.173  Sum_probs=184.9

Q ss_pred             ccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHh
Q 007526          220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL  299 (600)
Q Consensus       220 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  299 (600)
                      ...++.++..++.     ++..+  .+++++|+|++|+++....    ..+.++++|++|+|++|.++...    +..+.
T Consensus        56 ~~~v~c~~~~l~~-----iP~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-----VPQGI--PSNTRYLNLMENNIQMIQA----DTFRHLHHLEVLQLGRNSIRQIE----VGAFN  120 (452)
T ss_dssp             SCEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred             CcEEEECCCCcCc-----cCCCC--CCCccEEECcCCcCceECH----HHcCCCCCCCEEECCCCccCCcC----hhhcc
Confidence            4566666666543     22211  2689999999999987533    34556799999999999997532    34566


Q ss_pred             hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHH
Q 007526          300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFH  378 (600)
Q Consensus       300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~  378 (600)
                      .+++|++|+|++|.++....    ..+..+++|++|++++|.++.....     .....++|+.|++++| .+...    
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i----  187 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPS----GAFEYLSKLRELWLRNNPIESIPSY-----AFNRVPSLMRLDLGELKKLEYI----  187 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCT----TTSSSCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEE----
T ss_pred             CcccCCEEECCCCcCCccCh----hhhcccCCCCEEECCCCCcceeCHh-----HHhcCCcccEEeCCCCCCcccc----
Confidence            78999999999999886543    3466789999999999998863221     1135568999999985 44442    


Q ss_pred             HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      -...+..+++|++|++++|.+++.     + .+..+++|++|++++|.++...    +..+..+++|++|+|++|.++..
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKDM-----P-NLTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSSC-----C-CCTTCTTCCEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEE
T ss_pred             ChhhccCCCCCCEEECCCCccccc-----c-cccccccccEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceE
Confidence            112467889999999999998873     2 3667899999999999998753    34566679999999999998865


Q ss_pred             HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ...    .+..+++|++|++++|.++......    +..+++|++|+|++|.+.
T Consensus       258 ~~~----~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          258 ERN----AFDGLASLVELNLAHNNLSSLPHDL----FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTT----TTTTCTTCCEEECCSSCCSCCCTTS----STTCTTCCEEECCSSCEE
T ss_pred             CHH----HhcCCCCCCEEECCCCcCCccChHH----hccccCCCEEEccCCCcC
Confidence            432    3466789999999999998765543    345699999999999765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.75  E-value=1.9e-19  Score=180.13  Aligned_cols=59  Identities=17%  Similarity=0.173  Sum_probs=34.5

Q ss_pred             CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                      ++|++|+|++|.|+...     ..+  .++|++|++++|++++...      +..+++|++|++++|.+++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp-----~~~--~~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~L~~N~l~~~  309 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVP-----KGL--PAKLRVLDLSSNRLNRAPQ------PDELPEVDNLTLDGNPFLVP  309 (310)
T ss_dssp             TTCCCEECCSSCCCSCC-----SCC--CSCCSCEECCSCCCCSCCC------TTSCCCCSCEECSSTTTSCC
T ss_pred             CcCCEEECCCCCCCchh-----hhh--cCCCCEEECCCCcCCCCch------hhhCCCccEEECcCCCCCCC
Confidence            45666666666555221     111  2577777777777765421      23457777777777777653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.75  E-value=2.4e-20  Score=184.43  Aligned_cols=251  Identities=18%  Similarity=0.135  Sum_probs=179.4

Q ss_pred             cCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhh
Q 007526          248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE  327 (600)
Q Consensus       248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  327 (600)
                      -+.++.+++.++..     +..  ..++|++|++++|.+++..    +..+..+++|++|++++|.++....    ..+.
T Consensus        13 ~~~~~c~~~~l~~i-----p~~--~~~~l~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~   77 (285)
T 1ozn_A           13 KVTTSCPQQGLQAV-----PVG--IPAASQRIFLHGNRISHVP----AASFRACRNLTILWLHSNVLARIDA----AAFT   77 (285)
T ss_dssp             SCEEECCSSCCSSC-----CTT--CCTTCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred             CeEEEcCcCCcccC-----CcC--CCCCceEEEeeCCcCCccC----HHHcccCCCCCEEECCCCccceeCH----hhcC
Confidence            36788888887763     221  2368999999999987532    2345678999999999998876533    3466


Q ss_pred             cCCCCCEEEccCCC-CCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526          328 GNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK  406 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  406 (600)
                      .+++|++|++++|. ++......+     ...++|++|++++|.++..    .+..+..+++|++|++++|.++..    
T Consensus        78 ~l~~L~~L~l~~n~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----  144 (285)
T 1ozn_A           78 GLALLEQLDLSDNAQLRSVDPATF-----HGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQAL----  144 (285)
T ss_dssp             TCTTCCEEECCSCTTCCCCCTTTT-----TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----
T ss_pred             CccCCCEEeCCCCCCccccCHHHh-----cCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCccccc----
Confidence            78999999999997 665322212     3445899999999998873    345577889999999999988863    


Q ss_pred             HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526          407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS  486 (600)
Q Consensus       407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~  486 (600)
                      ....+..+++|++|++++|.++....    ..+..+++|++|++++|.+++...    ..+..+++|++|++++|.+++.
T Consensus       145 ~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          145 PDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHP----HAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSCC
T ss_pred             CHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCH----hHccCcccccEeeCCCCcCCcC
Confidence            22346678999999999999886432    235566999999999999877533    3345678999999999999887


Q ss_pred             HHHHHHHHHhhCCCccEEEccCCCCChH-HHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526          487 GAEFVADMLRYNNTISILDLRANGLRDE-GAKCLAQSFKVVNEALTSIDLAFNEIRDDGA  545 (600)
Q Consensus       487 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~  545 (600)
                      ....    +..+++|++|++++|.+... ....+...       ++.++.+.+.+....+
T Consensus       217 ~~~~----~~~l~~L~~L~l~~N~~~c~~~~~~~~~~-------l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          217 PTEA----LAPLRALQYLRLNDNPWVCDCRARPLWAW-------LQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             CHHH----HTTCTTCCEEECCSSCEECSGGGHHHHHH-------HHHCCSEECCCBEEES
T ss_pred             CHHH----cccCcccCEEeccCCCccCCCCcHHHHHH-------HHhcccccCccccCCc
Confidence            6544    44569999999999987632 22223332       3444455565554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.75  E-value=7.5e-21  Score=202.20  Aligned_cols=217  Identities=24%  Similarity=0.236  Sum_probs=131.5

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      ++|++|+|++|.++...    +..+..+++|++|+|++|.+++..    +  +..+++|++|++++|.++..+       
T Consensus        34 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~--l~~l~~L~~L~Ls~N~l~~l~-------   96 (487)
T 3oja_A           34 WNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETL----D--LESLSTLRTLDLNNNYVQELL-------   96 (487)
T ss_dssp             GGCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEE----E--CTTCTTCCEEECCSSEEEEEE-------
T ss_pred             CCccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCc----c--cccCCCCCEEEecCCcCCCCC-------
Confidence            36778888877777632    233455677777777777775422    1  456777777777777765422       


Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                        ..++|++|++++|.+++...        ...++|+.|++++|.++..    .+..+..+++|++|++++|.+++.   
T Consensus        97 --~~~~L~~L~L~~N~l~~~~~--------~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~---  159 (487)
T 3oja_A           97 --VGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV---  159 (487)
T ss_dssp             --ECTTCCEEECCSSCCCCEEE--------CCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE---
T ss_pred             --CCCCcCEEECcCCcCCCCCc--------cccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc---
Confidence              34677777777777765321        1234677777777777663    233455667777777777777653   


Q ss_pred             HHHHHhh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          406 KIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       406 ~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                       .+..+. .+++|++|++++|.++...      ....+++|++|+|++|.|++...     .+..+++|+.|++++|.++
T Consensus       160 -~~~~l~~~l~~L~~L~Ls~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          160 -NFAELAASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMGP-----EFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             -EGGGGGGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEECG-----GGGGGTTCSEEECTTSCCC
T ss_pred             -ChHHHhhhCCcccEEecCCCcccccc------ccccCCCCCEEECCCCCCCCCCH-----hHcCCCCccEEEecCCcCc
Confidence             222232 4567777777777766531      12234677777777776665322     1344566777777777666


Q ss_pred             hhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          485 ASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       485 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      ..+     ..+..+++|+.|++++|.+..
T Consensus       228 ~lp-----~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          228 LIE-----KALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EEC-----TTCCCCTTCCEEECTTCCBCH
T ss_pred             ccc-----hhhccCCCCCEEEcCCCCCcC
Confidence            432     223445667777777776663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.75  E-value=8.5e-21  Score=189.70  Aligned_cols=13  Identities=23%  Similarity=0.552  Sum_probs=7.0

Q ss_pred             CccEEEccCCCCC
Q 007526          500 TISILDLRANGLR  512 (600)
Q Consensus       500 ~L~~L~Ls~n~i~  512 (600)
                      +|++|++++|.++
T Consensus       249 ~L~~L~L~~N~~~  261 (306)
T 2z66_A          249 SLAFLNLTQNDFA  261 (306)
T ss_dssp             TCCEEECTTCCEE
T ss_pred             cCCEEEccCCCee
Confidence            5555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.74  E-value=3.4e-17  Score=150.20  Aligned_cols=140  Identities=22%  Similarity=0.231  Sum_probs=106.1

Q ss_pred             HHHHHHHHHhCCCccEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCC
Q 007526          151 KQTLNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP  229 (600)
Q Consensus       151 ~~~l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  229 (600)
                      .+.+..++...+.|++|+|++| .+++.++..++..+..+++|++|+|++|.|++.+...++..+..+++|++|+|++|.
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3455666677777888888777 777777777777777777777777777777777777777777777777777777777


Q ss_pred             CChHHHHHHHHHHhhCCCcCEEEe--ecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhh
Q 007526          230 IGDEGVKCLCDILVDNAGVERLQL--SSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG  290 (600)
Q Consensus       230 l~~~~~~~l~~~l~~~~~L~~L~L--s~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  290 (600)
                      |++.|...++..+..+++|++|+|  ++|.+++.+...++..+..+++|++|+|++|.+++.+
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            777777777777777777777777  6777777777777777777777777777777776554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=7.8e-20  Score=194.36  Aligned_cols=239  Identities=23%  Similarity=0.244  Sum_probs=179.7

Q ss_pred             hcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHH
Q 007526          215 QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL  294 (600)
Q Consensus       215 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  294 (600)
                      ..+++|++|+|++|.++..    .+..+..+++|++|+|++|.++....      +..+++|++|+|++|.+++..    
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~----   96 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL----   96 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE----
T ss_pred             ccCCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC----
Confidence            3345899999999999874    23456678999999999999876321      566799999999999886422    


Q ss_pred             HHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChh
Q 007526          295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK  374 (600)
Q Consensus       295 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  374 (600)
                           ..++|++|++++|.++....       ..+++|+.|++++|.+++.....+     ...++|+.|++++|.++..
T Consensus        97 -----~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~  159 (487)
T 3oja_A           97 -----VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRDLDE-----GCRSRVQYLDLKLNEIDTV  159 (487)
T ss_dssp             -----ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGGBCG-----GGGSSEEEEECTTSCCCEE
T ss_pred             -----CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCchhh-----cCCCCCCEEECCCCCCCCc
Confidence                 35899999999999876543       246789999999999987422111     2345899999999999874


Q ss_pred             hHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007526          375 GAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN  453 (600)
Q Consensus       375 ~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  453 (600)
                          .+..+. .+++|++|+|++|.+++.      .....+++|++|++++|.++...     ..+..+++|+.|+|++|
T Consensus       160 ----~~~~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~-----~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          160 ----NFAELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAFMG-----PEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             ----EGGGGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCEEC-----GGGGGGTTCSEEECTTS
T ss_pred             ----ChHHHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCCCC-----HhHcCCCCccEEEecCC
Confidence                233343 689999999999999874      22335789999999999998732     23556699999999999


Q ss_pred             CCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526          454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR  507 (600)
Q Consensus       454 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  507 (600)
                      .++..     ...+..+++|+.|++++|.+...   .+...+..++.|+.++++
T Consensus       225 ~l~~l-----p~~l~~l~~L~~L~l~~N~l~c~---~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          225 KLVLI-----EKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCEE-----CTTCCCCTTCCEEECTTCCBCHH---HHHHHHTTCHHHHHHHHH
T ss_pred             cCccc-----chhhccCCCCCEEEcCCCCCcCc---chHHHHHhCCCCcEEecc
Confidence            98853     23356678999999999998733   233445556777777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=4.6e-18  Score=169.73  Aligned_cols=191  Identities=18%  Similarity=0.207  Sum_probs=121.7

Q ss_pred             CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526          274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG  353 (600)
Q Consensus       274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  353 (600)
                      ++|++|++++|.+++.     + .+..+++|++|++++|.++....      +..+++|++|++++|.+++..      .
T Consensus        41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~------~  102 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS------A  102 (308)
T ss_dssp             HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG------G
T ss_pred             CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch------h
Confidence            6678888887777542     1 35567777777777777765432      556777777777777776531      1


Q ss_pred             hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526          354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      + ...++|++|++++|.++..     + .+..+++|++|++++|.+++..     . +..+++|++|++++|.+++... 
T Consensus       103 ~-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~-----~-l~~l~~L~~L~l~~n~l~~~~~-  168 (308)
T 1h6u_A          103 I-AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS-----P-LAGLTNLQYLSIGNAQVSDLTP-  168 (308)
T ss_dssp             G-TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             h-cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc-----c-ccCCCCccEEEccCCcCCCChh-
Confidence            2 2344677777777777662     2 2566777777777777776531     1 5566777777777777765321 


Q ss_pred             HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                           +..+++|++|++++|.+++...      +..+++|++|++++|.+++...      +..+++|++|++++|.++.
T Consensus       169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred             -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence                 4555777777777776665422      4556677777777777766541      4555777777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=7.6e-18  Score=168.16  Aligned_cols=192  Identities=21%  Similarity=0.228  Sum_probs=144.4

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      ++|++|++++|.++..     . .+..+++|++|++++|.+++..     . +..+++|++|++++|.++...      .
T Consensus        41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~-----~-~~~l~~L~~L~L~~n~l~~~~------~  102 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLA-----P-LKNLTKITELELSGNPLKNVS------A  102 (308)
T ss_dssp             HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCCSCCEEECCSCCCSCCG------G
T ss_pred             CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCCh-----h-HccCCCCCEEEccCCcCCCch------h
Confidence            7888899988888763     1 2556788899999988886532     1 567888999999988887642      4


Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                      +..+++|++|++++|.+++..      .+ ...++|++|++++|.++..     +. +..+++|++|++++|.+++.   
T Consensus       103 ~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~---  166 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITDVT------PL-AGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDL---  166 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG------GG-TTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC---
T ss_pred             hcCCCCCCEEECCCCCCCCch------hh-cCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCC---
Confidence            667888999999988887632      12 3455888999998888773     22 67888899999988888873   


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                        .. +..+++|++|++++|.+++...      +..+++|++|++++|.+++..      .+..+++|++|++++|.++.
T Consensus       167 --~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          167 --TP-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             --GG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred             --hh-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------cccCCCCCCEEEccCCeeec
Confidence              22 6678888999999888876432      566788999999988887654      25678888999998888755


Q ss_pred             h
Q 007526          486 S  486 (600)
Q Consensus       486 ~  486 (600)
                      .
T Consensus       232 ~  232 (308)
T 1h6u_A          232 Q  232 (308)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.68  E-value=4.6e-19  Score=174.31  Aligned_cols=209  Identities=18%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526          302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE  381 (600)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  381 (600)
                      ++|++|++++|.++..+.    ..+..+++|++|++++|.++......+     ...++|++|++++|.++..    .+.
T Consensus        28 ~~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~   94 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHLSTLILTGNPIQSL----ALG   94 (276)
T ss_dssp             TTCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTTTT-----TTCTTCCEEECTTCCCCEE----CTT
T ss_pred             CCccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHHHc-----cCCcCCCEEECCCCccCcc----Chh
Confidence            457777777777665443    234456677777777776654321111     2334666666666666553    123


Q ss_pred             HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526          382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK  461 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  461 (600)
                      .+..+++|++|++++|.+....    ...+..+++|++|++++|.++...   ++..+..+++|++|++++|.++.....
T Consensus        95 ~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~  167 (276)
T 2z62_A           95 AFSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCT  167 (276)
T ss_dssp             TTTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             hhcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHH
Confidence            3455666666666666655421    112444556666666666554421   122344445566666666655543222


Q ss_pred             HHHHHHhhCCCcc-EEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007526          462 ALSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI  540 (600)
Q Consensus       462 ~l~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i  540 (600)
                      .+.. +...+.|. +|++++|.++......+     ...+|++|++++|.++......+...     ++|++|++++|++
T Consensus       168 ~~~~-l~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~  236 (276)
T 2z62_A          168 DLRV-LHQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPW  236 (276)
T ss_dssp             GGHH-HHTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTTTTC-----CSCCEEECCSSCB
T ss_pred             Hhhh-hhhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHhccc-----ccccEEEccCCcc
Confidence            2221 12222222 55555555544332211     11345555555555554322222211     4455555555555


Q ss_pred             C
Q 007526          541 R  541 (600)
Q Consensus       541 ~  541 (600)
                      .
T Consensus       237 ~  237 (276)
T 2z62_A          237 D  237 (276)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.67  E-value=1.2e-15  Score=138.41  Aligned_cols=134  Identities=11%  Similarity=0.128  Sum_probs=82.1

Q ss_pred             HHHHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCh
Q 007526          379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                      +...+.+.+.|++|+|++| .|++.|+..+++++..++.|++|+|++|.|++.+..+++.+|..++.|++|+|++|.|++
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            4444455556666666654 666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHhhCCCccEEeccCc---CCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          458 DGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       458 ~~~~~l~~~l~~~~~L~~L~l~~n---~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      .|...+++.+..++.|++|++++|   .|++.+...++++++.+++|+.|+++.|.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            666666666666666666666543   4566655666666666666666666555433

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.66  E-value=2.3e-15  Score=136.54  Aligned_cols=131  Identities=11%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             HHHhhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh
Q 007526          408 ADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS  486 (600)
Q Consensus       408 ~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~  486 (600)
                      ...+...+.|++|+|++| .|.+.+...+++++..++.|++|+|++|.|++.+...++.+++.++.|++|+|++|.|++.
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            333444445555555543 5555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhhCCCccEEEccCC---CCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          487 GAEFVADMLRYNNTISILDLRAN---GLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       487 ~~~~l~~~l~~~~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      +...++++++.+++|++|+|++|   .+++.+...+.++++. |++|++|+++.|.
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~-N~tL~~L~l~~~~  168 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEE-NESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHH-CSSCCEEECCCCC
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHh-CCCcCeEeccCCC
Confidence            55555555555555555555432   3444444444444432 3445555554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=1.6e-18  Score=170.34  Aligned_cols=165  Identities=20%  Similarity=0.189  Sum_probs=89.9

Q ss_pred             hcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH
Q 007526          327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK  406 (600)
Q Consensus       327 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  406 (600)
                      ..+++|++|++++|.++......+     ...++|++|++++|.++..    .+..+..+++|++|++++|.+++..   
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---  140 (276)
T 2z62_A           73 QSLSHLSTLILTGNPIQSLALGAF-----SGLSSLQKLVAVETNLASL----ENFPIGHLKTLKELNVAHNLIQSFK---  140 (276)
T ss_dssp             TTCTTCCEEECTTCCCCEECTTTT-----TTCTTCCEEECTTSCCCCS----TTCCCTTCTTCCEEECCSSCCCCCC---
T ss_pred             cCCcCCCEEECCCCccCccChhhh-----cCCccccEEECCCCCcccc----CchhcccCCCCCEEECcCCccceec---
Confidence            344555555555555543211111     1223555666655555442    1112455666777777766665421   


Q ss_pred             HHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcC-EEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT-SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                      ++..+..+++|++|++++|.++......+... ...+.|. +|++++|.++......+     ...+|++|++++|.++.
T Consensus       141 l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKS  214 (276)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSC
T ss_pred             CchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceee
Confidence            23345566777777777777665433333322 1223333 77777777765422111     23378888888888776


Q ss_pred             hHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          486 SGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       486 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      ....    .+..+++|++|++++|.++.
T Consensus       215 ~~~~----~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          215 VPDG----IFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCTT----TTTTCCSCCEEECCSSCBCC
T ss_pred             cCHh----HhcccccccEEEccCCcccc
Confidence            5443    23456888888888887774

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.64  E-value=8.1e-18  Score=166.32  Aligned_cols=176  Identities=22%  Similarity=0.195  Sum_probs=73.9

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL  298 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  298 (600)
                      ++++|++++|.++..    ....+..+++|++|++++|.++....      ...+++|++|++++|.++.     ++..+
T Consensus        32 ~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~   96 (290)
T 1p9a_G           32 DTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG   96 (290)
T ss_dssp             TCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred             CCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence            455555555554432    11223334555555555555443211      0233555555555555531     22223


Q ss_pred             hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526          299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH  378 (600)
Q Consensus       299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  378 (600)
                      ..+++|++|++++|.++....    ..+..+++|++|++++|.++....     ......++|+.|++++|.++..    
T Consensus        97 ~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l----  163 (290)
T 1p9a_G           97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTEL----  163 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSCC----
T ss_pred             ccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCcc----
Confidence            334455555555554443221    123344555555555555443211     1111223455555555544431    


Q ss_pred             HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCC
Q 007526          379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI  427 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  427 (600)
                      .+..+..+++|++|++++|.++.     ++..+.....|++|++++|.+
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred             CHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence            11122344455555555554443     233333334444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.63  E-value=2.3e-18  Score=168.69  Aligned_cols=202  Identities=19%  Similarity=0.182  Sum_probs=108.4

Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHH
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY  382 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  382 (600)
                      ..+.++++++.++..+.     .  -.+++++|++++|.++......    + ...++|++|++++|.++..    .+..
T Consensus        17 ~~~~l~~~~~~l~~ip~-----~--~~~~l~~L~l~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~i----~~~~   80 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-----N--IPADTKKLDLQSNKLSSLPSKA----F-HRLTKLRLLYLNDNKLQTL----PAGI   80 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-----C--CCTTCSEEECCSSCCSCCCTTS----S-SSCTTCCEEECCSSCCSCC----CTTT
T ss_pred             CCCEEEccCCCCCccCC-----C--CCCCCCEEECcCCCCCeeCHHH----h-cCCCCCCEEECCCCccCee----Chhh
Confidence            45677777776654321     1  1245777777777665432111    1 2334677777777766542    1122


Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      +..+++|++|++++|.+...    ....+..+++|++|++++|.++....    ..+..+++|++|+|++|.|+....  
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~--  150 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGYNELQSLPK--  150 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred             hcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCCCcCCccCH--
Confidence            35566677777777666542    11234455666777776666655322    223445666666666666654322  


Q ss_pred             HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                        ..+..+++|++|++++|.++......    +..+++|++|++++|.++......+...     ++|++|++++|.+.
T Consensus       151 --~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          151 --GVFDKLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPEGAFDSL-----EKLKMLQLQENPWD  218 (270)
T ss_dssp             --TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBC
T ss_pred             --hHccCCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCHHHhccc-----cCCCEEEecCCCee
Confidence              11244566666666666665543322    2334666666666666665433222221     55666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.62  E-value=3.9e-18  Score=168.56  Aligned_cols=216  Identities=16%  Similarity=0.071  Sum_probs=137.6

Q ss_pred             hCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526          300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV  379 (600)
Q Consensus       300 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  379 (600)
                      .++++++++++++.++..+.     .  -.++++.|++++|.++......+     ...++|+.|++++|.++..     
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~-----~--~~~~l~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~-----   70 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPP-----D--LPKDTTILHLSENLLYTFSLATL-----MPYTRLTQLNLDRAELTKL-----   70 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCS-----C--CCTTCCEEECTTSCCSEEEGGGG-----TTCTTCCEEECTTSCCCEE-----
T ss_pred             ccCCccEEECCCCCCCcCCC-----C--CCCCCCEEEcCCCcCCccCHHHh-----hcCCCCCEEECCCCccCcc-----
Confidence            46778888888887765432     1  12578888888888775422222     2445788888888887763     


Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG  459 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  459 (600)
                      +. ...+++|++|++++|.++.     ++..+..+++|++|++++|+++....    ..+..+++|++|+|++|.|+...
T Consensus        71 ~~-~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           71 QV-DGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             EC-CSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCCC
T ss_pred             cC-CCCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCccC
Confidence            22 1567788888888887774     44445567788888888888775322    33455578888888888776542


Q ss_pred             HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      .    ..+..+++|++|++++|+++......    +..+++|++|++++|.|+..... +..     ..+|++|++++|.
T Consensus       141 ~----~~~~~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~~ip~~-~~~-----~~~L~~l~L~~Np  206 (290)
T 1p9a_G          141 P----GLLTPTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLYTIPKG-FFG-----SHLLPFAFLHGNP  206 (290)
T ss_dssp             T----TTTTTCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCCCCCTT-TTT-----TCCCSEEECCSCC
T ss_pred             h----hhcccccCCCEEECCCCcCCccCHHH----hcCcCCCCEEECCCCcCCccChh-hcc-----cccCCeEEeCCCC
Confidence            2    22345677888888888877654432    33457888888888877753221 111     1567888888887


Q ss_pred             CC-hhHHHHHHHHHHhCc
Q 007526          540 IR-DDGAFAIAQALKANE  556 (600)
Q Consensus       540 i~-~~~~~~l~~~~~~~~  556 (600)
                      +. +-....+..++..+.
T Consensus       207 ~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          207 WLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             BCCSGGGHHHHHHHHHTG
T ss_pred             ccCcCccHHHHHHHHhCc
Confidence            65 333444555555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=1.7e-17  Score=162.55  Aligned_cols=14  Identities=21%  Similarity=0.145  Sum_probs=6.7

Q ss_pred             CCCcCEEECcCCCC
Q 007526          442 NSVITSLDLAYNPI  455 (600)
Q Consensus       442 ~~~L~~L~Ls~n~i  455 (600)
                      +++|++|++++|++
T Consensus       204 l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          204 LTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             CcCCCEEEccCCCc
Confidence            34455555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=3.3e-17  Score=160.52  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      +..+++|++|++++|.+++.    ....+..+++|++|++++|.++....    ..+..+++|++|++++|.+++...  
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~--  198 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSL----PKGVFDKLTNLTELDLSYNQLQSLPE----GVFDKLTQLKDLRLYQNQLKSVPD--  198 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT--
T ss_pred             hccCCCCCEEECCCCccCcc----CHHHhccCccCCEEECCCCCcCccCH----HHhcCCccCCEEECCCCcCCccCH--
Confidence            34455555555555555432    11223445566666666665554211    223444666666666666654322  


Q ss_pred             HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                        ..+..+++|++|++++|.+...           |+.|+.|++.+|.+++.
T Consensus       199 --~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          199 --GVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGV  237 (272)
T ss_dssp             --TTTTTCTTCCEEECCSSCBCCC-----------TTTTHHHHHHHHHTGGG
T ss_pred             --HHHhCCcCCCEEEccCCCcccc-----------CcHHHHHHHHHHhCCCc
Confidence              2234556777777777765432           45666666666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.62  E-value=9.9e-18  Score=164.10  Aligned_cols=202  Identities=17%  Similarity=0.166  Sum_probs=127.5

Q ss_pred             CccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhh
Q 007526          275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL  354 (600)
Q Consensus       275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l  354 (600)
                      .++.++++++.++.     ++..  -.+++++|++++|.++....    ..+..+++|++|++++|.++...     ...
T Consensus        17 ~~~~l~~~~~~l~~-----ip~~--~~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~i~-----~~~   80 (270)
T 2o6q_A           17 NKNSVDCSSKKLTA-----IPSN--IPADTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLNDNKLQTLP-----AGI   80 (270)
T ss_dssp             TTTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCSSCCSCCC-----TTT
T ss_pred             CCCEEEccCCCCCc-----cCCC--CCCCCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCCCccCeeC-----hhh
Confidence            46777887777753     2221  12567888888887765432    24556777888888887776421     111


Q ss_pred             hcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH
Q 007526          355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA  434 (600)
Q Consensus       355 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  434 (600)
                      ....++|++|++++|.++..    .+..+..+++|++|++++|.++..    ....+..+++|++|++++|.++....  
T Consensus        81 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~--  150 (270)
T 2o6q_A           81 FKELKNLETLWVTDNKLQAL----PIGVFDQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPK--  150 (270)
T ss_dssp             TSSCTTCCEEECCSSCCCCC----CTTTTTTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT--
T ss_pred             hcCCCCCCEEECCCCcCCcC----CHhHcccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCH--
Confidence            13345788888888877663    123346677788888888877653    12335567778888888887765322  


Q ss_pred             HHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          435 IARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       435 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                        ..+..+++|++|++++|.++.....    .+..+++|++|++++|.++......    +..+++|+.|++++|.+.
T Consensus       151 --~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          151 --GVFDKLTSLKELRLYNNQLKRVPEG----AFDKLTELKTLKLDNNQLKRVPEGA----FDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             --TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBC
T ss_pred             --hHccCCcccceeEecCCcCcEeChh----HhccCCCcCEEECCCCcCCcCCHHH----hccccCCCEEEecCCCee
Confidence              2244557788888888877654322    2345677888888888777654432    344577888888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=1.9e-15  Score=149.30  Aligned_cols=124  Identities=23%  Similarity=0.241  Sum_probs=60.5

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +|++|++++|.++.     ++ .+..+++|++|++++|.+++.      ..+..+++|++|++++|.++..      ..+
T Consensus        91 ~L~~L~l~~n~l~~-----~~-~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l  152 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVL  152 (291)
T ss_dssp             TCCEEECCSSCCCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGG
T ss_pred             CCCEEECCCCcCCC-----Ch-hhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhh
Confidence            45555555554444     11 144455555555555555441      1244455555555555555442      223


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      ..+++|++|++++|.+++...      +..+++|++|++++|.+++..      .+..+++|+.|++++|.+++
T Consensus       153 ~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~L~~N~i~~l~------~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          153 SRLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccCCCCCEEEccCCccccchh------hcCCCccCEEECCCCcCCCCh------hhccCCCCCEEECcCCcccC
Confidence            444555555555555544321      344555555555555555431      13344555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.57  E-value=8.7e-16  Score=151.82  Aligned_cols=171  Identities=23%  Similarity=0.232  Sum_probs=126.4

Q ss_pred             CCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHH
Q 007526          329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA  408 (600)
Q Consensus       329 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  408 (600)
                      +++|+.|++++|.+.+..      .+ ...++|++|++++|.++..     +. +..+++|++|++++|.+++.      
T Consensus        45 l~~L~~L~l~~~~i~~~~------~~-~~l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~------  105 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ------GI-QYLPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKDL------  105 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCG------
T ss_pred             cCcccEEEccCCCcccCh------hH-hcCCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCCC------
Confidence            456777777777766531      12 2344788888888888763     33 67888999999999988873      


Q ss_pred             HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHH
Q 007526          409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA  488 (600)
Q Consensus       409 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~  488 (600)
                      ..+..+++|++|++++|.+++.      ..+..+++|++|++++|.+++.      ..+..+++|++|++++|.+++...
T Consensus       106 ~~l~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             hhhccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh
Confidence            2367788999999999988873      2466678899999999988764      345678889999999998887643


Q ss_pred             HHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       489 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                            +..+++|++|++++|.|++..  .+...     ++|+.|++++|++...
T Consensus       174 ------l~~l~~L~~L~L~~N~i~~l~--~l~~l-----~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          174 ------LAGLTKLQNLYLSKNHISDLR--ALAGL-----KNLDVLELFSQECLNK  215 (291)
T ss_dssp             ------GTTCTTCCEEECCSSCCCBCG--GGTTC-----TTCSEEEEEEEEEECC
T ss_pred             ------hcCCCccCEEECCCCcCCCCh--hhccC-----CCCCEEECcCCcccCC
Confidence                  556789999999999888742  13222     7789999998887653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.56  E-value=7.9e-17  Score=155.85  Aligned_cols=169  Identities=18%  Similarity=0.209  Sum_probs=90.9

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .++.|++++|.++..    .+..+..+++|++|++++|.+++.    ....+..+++|++|++++|.++....    ..+
T Consensus        36 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~  103 (251)
T 3m19_A           36 DTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASLPL----GVF  103 (251)
T ss_dssp             TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCT----TTT
T ss_pred             CCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCcccccCh----hHh
Confidence            456666666655542    122345556666666666666542    22234455666666666666654321    223


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|+|++|.|+....    ..+..+++|++|++++|.++......    +..+++|++|+|++|.++......+
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAGA----FDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHHH----cCcCcCCCEEECCCCcCCccCHHHH
Confidence            444666666666666654321    12244566677777777666554322    3334677777777776665433333


Q ss_pred             HHHHhhcCccccEEEccCCCCChh--HHHHHHHHHH
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALK  553 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~~--~~~~l~~~~~  553 (600)
                      ...     ++|++|++++|++...  ....+..+..
T Consensus       176 ~~l-----~~L~~L~l~~N~~~c~~~~~~~l~~~~~  206 (251)
T 3m19_A          176 DRL-----GKLQTITLFGNQFDCSRCEILYLSQWIR  206 (251)
T ss_dssp             TTC-----TTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred             hCC-----CCCCEEEeeCCceeCCccccHHHHHHHH
Confidence            222     5677777777766543  3333444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.53  E-value=5.5e-17  Score=156.98  Aligned_cols=180  Identities=17%  Similarity=0.168  Sum_probs=138.9

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ..+.++++++.++.     ++..+  .+++++|++++|.+...    ....+..+++|++|++++|.++...    +..+
T Consensus        15 ~~~~l~~~~~~l~~-----~p~~~--~~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~   79 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-----VPSGI--PADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTLS----AGVF   79 (251)
T ss_dssp             GGTEEECTTCCCSS-----CCSCC--CTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCC----TTTT
T ss_pred             CCeEEecCCCCccc-----cCCCC--CCCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCccC----HhHh
Confidence            57789999888876     44322  25899999999998874    2345677899999999999998753    2345


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|+|++|.++....    ..+..+++|++|++++|.|+......    +..+++|++|+|++|.|+......+
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~  151 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPL----GVFDHLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPAGAF  151 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCcCCEEECCCCcccccCh----hHhcccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCHHHc
Confidence            667999999999999886532    23456789999999999998765433    3456999999999999997655444


Q ss_pred             HHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchh
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF  573 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~  573 (600)
                      ...     ++|++|+|++|+|++.....+..+.      .|++|+|++|++...
T Consensus       152 ~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          152 DKL-----TNLQTLSLSTNQLQSVPHGAFDRLG------KLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTC-----TTCCEEECCSSCCSCCCTTTTTTCT------TCCEEECCSCCBCTT
T ss_pred             CcC-----cCCCEEECCCCcCCccCHHHHhCCC------CCCEEEeeCCceeCC
Confidence            433     7899999999999976654443332      399999999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=6.5e-15  Score=136.67  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=15.9

Q ss_pred             hhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                      +..+++|++|++++|.+++..      .+..+++|++|++++|+|+
T Consensus       155 l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GGGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred             hcCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence            333444444444444444311      2333344555555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=2.4e-15  Score=139.62  Aligned_cols=111  Identities=13%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      +..+++|++|++++|.+.+.      ..+..+++|++|++++|.+++...    ..+..+++|++|++++|.+++.... 
T Consensus        62 l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~i~~~~~~-  130 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILT-  130 (197)
T ss_dssp             GGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGGS----CCCTTCTTCCEEECCSSBCBGGGHH-
T ss_pred             HhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCcccC----hhhcCCCCCCEEEecCCccCcHhHH-
Confidence            33444444444444443331      123334444444444444443211    1122334455555555544443222 


Q ss_pred             HHHHHhhCCCccEEeccCcC-CChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          463 LSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                         .+..+++|++|++++|. +++..      .+..+++|++|++++|.+++
T Consensus       131 ---~l~~l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          131 ---KINTLPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ---HHTTCSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCC
T ss_pred             ---HHhhCCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcC
Confidence               12334455555555554 44431      13334555555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.49  E-value=5e-16  Score=149.03  Aligned_cols=15  Identities=20%  Similarity=0.324  Sum_probs=7.9

Q ss_pred             CCccEEEccCCCCCh
Q 007526          499 NTISILDLRANGLRD  513 (600)
Q Consensus       499 ~~L~~L~Ls~n~i~~  513 (600)
                      ++|++|++++|.++.
T Consensus       205 ~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          205 SGPSLLDVSQTSVTA  219 (239)
T ss_dssp             BCCSEEECTTCCCCC
T ss_pred             cCCcEEECCCCcccc
Confidence            455555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.49  E-value=9.2e-15  Score=158.48  Aligned_cols=174  Identities=22%  Similarity=0.233  Sum_probs=132.6

Q ss_pred             hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHH
Q 007526          299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH  378 (600)
Q Consensus       299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~  378 (600)
                      ..+..|+.|++++|.+....      .+..+++|+.|+|++|.+.+...      + ...++|+.|+|++|.+..     
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~------l-~~l~~L~~L~Ls~N~l~~-----  101 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP------L-TNLKNLGWLFLDENKIKD-----  101 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG------G-GGCTTCCEEECCSSCCCC-----
T ss_pred             hcCCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh------h-ccCCCCCEEECcCCCCCC-----
Confidence            35688999999999887643      36678899999999998876432      2 344589999999998877     


Q ss_pred             HHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      ++ .+..+++|++|+|++|.+.+.      ..+..+++|+.|+|++|.++..      ..+..+++|+.|+|++|.|.+.
T Consensus       102 l~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~  168 (605)
T 1m9s_A          102 LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDI  168 (605)
T ss_dssp             CT-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCC
T ss_pred             Ch-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCc
Confidence            32 467888899999999988863      3467788899999999988874      3466778899999998888765


Q ss_pred             HHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHH
Q 007526          459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG  515 (600)
Q Consensus       459 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  515 (600)
                      ..      +..+++|+.|+|++|.|++..      .+..+++|+.|+|++|.+.+.+
T Consensus       169 ~~------l~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          169 VP------LAGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             GG------GTTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEEEECCC
T ss_pred             hh------hccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCcCcCCc
Confidence            32      567788889999988887752      3566788888888888777643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.49  E-value=2.2e-14  Score=155.59  Aligned_cols=172  Identities=24%  Similarity=0.185  Sum_probs=141.4

Q ss_pred             CCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHH
Q 007526          273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS  352 (600)
Q Consensus       273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  352 (600)
                      +++|+.|++++|.+.+.      ..+..+++|+.|+|++|.++....      +..+++|+.|+|++|.+.+..      
T Consensus        42 L~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------  103 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------  103 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------
T ss_pred             CCCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------
Confidence            38899999999998653      246789999999999999887542      678999999999999988632      


Q ss_pred             hhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHH
Q 007526          353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA  432 (600)
Q Consensus       353 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  432 (600)
                      .+ ...++|+.|+|++|.+...      ..+..+++|+.|+|++|.+++.      ..+..+++|+.|+|++|.+++...
T Consensus       104 ~l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          104 SL-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             TS-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             hh-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh
Confidence            22 3456899999999999873      3478899999999999999873      457789999999999999987432


Q ss_pred             HHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhH
Q 007526          433 SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG  487 (600)
Q Consensus       433 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~  487 (600)
                            +..+++|+.|+|++|.|++.      ..+..+++|+.|++++|.+...+
T Consensus       171 ------l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          171 ------LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             ------GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECCC
T ss_pred             ------hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCCc
Confidence                  66779999999999999874      23577899999999999886653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=5.7e-15  Score=158.36  Aligned_cols=187  Identities=19%  Similarity=0.218  Sum_probs=99.9

Q ss_pred             CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526          190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL  269 (600)
Q Consensus       190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~  269 (600)
                      .+++.|++++|.++.     ++..+  .++|++|+|++|.|+.     ++   ..+++|++|++++|+++..     +. 
T Consensus        59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~-----ip---~~l~~L~~L~Ls~N~l~~i-----p~-  117 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALIS-----LP---ELPASLEYLDACDNRLSTL-----PE-  117 (571)
T ss_dssp             TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred             CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcc-----cc---cccCCCCEEEccCCCCCCc-----ch-
Confidence            467777777776652     22111  2567777777777663     22   2346677777777766652     12 


Q ss_pred             HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526          270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA  349 (600)
Q Consensus       270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  349 (600)
                      +.  .+|++|++++|.++.     ++.   .+++|+.|++++|.++..+.        .+++|++|++++|.++....  
T Consensus       118 l~--~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~lp~--  177 (571)
T 3cvr_A          118 LP--ASLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFLPE--  177 (571)
T ss_dssp             CC--TTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC--
T ss_pred             hh--cCCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCcch--
Confidence            11  267777777776653     222   35666666666666654221        34566666666666654211  


Q ss_pred             HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCC-------cEEEccCCCCChHHHHHHHHHhhcCCCccEEEc
Q 007526          350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL-------LWINLYMNDIGDEGAEKIADALKQNRTITTIDL  422 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L-------~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L  422 (600)
                          +.   ++|+.|++++|.|+.     ++. +..  +|       +.|+|++|.|+.     ++..+..+++|++|++
T Consensus       178 ----l~---~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L  237 (571)
T 3cvr_A          178 ----LP---ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIIL  237 (571)
T ss_dssp             ----CC---TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEEC
T ss_pred             ----hh---CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEe
Confidence                11   356666666666654     222 111  33       566666665553     3444444555666666


Q ss_pred             cCCCCChHHHHHHHH
Q 007526          423 GGNNIHSKGASAIAR  437 (600)
Q Consensus       423 ~~n~l~~~~~~~l~~  437 (600)
                      ++|.++......+..
T Consensus       238 ~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          238 EDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CSSSCCHHHHHHHHH
T ss_pred             eCCcCCCcCHHHHHH
Confidence            666665554444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=6e-15  Score=158.20  Aligned_cols=194  Identities=19%  Similarity=0.157  Sum_probs=123.3

Q ss_pred             CCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh
Q 007526          274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG  353 (600)
Q Consensus       274 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  353 (600)
                      .+|+.|++++|.+++     ++..+  .++|++|++++|.++..+        ..+++|++|++++|.++..     .. 
T Consensus        59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-----p~-  117 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-----PE-  117 (571)
T ss_dssp             TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred             CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-----ch-
Confidence            478888888888853     23222  367888888888877433        2467888888888887752     11 


Q ss_pred             hhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH
Q 007526          354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       354 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      +..   +|+.|++++|.++.     ++.   .+++|++|++++|.|+.     ++.   .+++|++|++++|.|+...  
T Consensus       118 l~~---~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp--  176 (571)
T 3cvr_A          118 LPA---SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLP--  176 (571)
T ss_dssp             CCT---TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCC--
T ss_pred             hhc---CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcc--
Confidence            211   68888888888776     443   56788888888887775     222   3567888888888777622  


Q ss_pred             HHHHHhhcCCCcCEEECcCCCCChhHHHHHHH-HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                         . +.  ++|++|+|++|.|+....  +.. .....+.|++|++++|.|+..+.     .+..+++|+.|+|++|.++
T Consensus       177 ---~-l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          177 ---E-LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHIPE-----NILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ---C-CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCCCG-----GGGGSCTTEEEECCSSSCC
T ss_pred             ---h-hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceecCH-----HHhcCCCCCEEEeeCCcCC
Confidence               2 22  678888888887764322  111 01112233777777777765422     2333577777777777777


Q ss_pred             hHHHHHHHHH
Q 007526          513 DEGAKCLAQS  522 (600)
Q Consensus       513 ~~~~~~l~~~  522 (600)
                      +..+..+...
T Consensus       244 ~~~p~~l~~l  253 (571)
T 3cvr_A          244 SRIRESLSQQ  253 (571)
T ss_dssp             HHHHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            7666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.47  E-value=3.4e-16  Score=150.17  Aligned_cols=40  Identities=10%  Similarity=0.132  Sum_probs=18.1

Q ss_pred             CCccEEEccCCC-CChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          499 NTISILDLRANG-LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       499 ~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                      ++|++|++++|. ++......+...    .++|++|++++|+|+.
T Consensus       179 ~~L~~L~L~~n~~l~~i~~~~~~~l----~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          179 TKLDAVYLNKNKYLTVIDKDAFGGV----YSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             CEEEEEECTTCTTCCEECTTTTTTC----SBCCSEEECTTCCCCC
T ss_pred             CCCCEEEcCCCCCcccCCHHHhhcc----ccCCcEEECCCCcccc
Confidence            455555555552 554322222110    1345566666665553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=1.9e-15  Score=147.04  Aligned_cols=169  Identities=18%  Similarity=0.229  Sum_probs=117.9

Q ss_pred             CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHH
Q 007526          330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD  409 (600)
Q Consensus       330 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  409 (600)
                      .++..++++++.+++..  .+ .    ..++|+.|++++|.++.     ++ .+..+++|++|++++|.+++.     ..
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~-~----~l~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~~~-----~~   80 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQ-K----ELSGVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQISDL-----SP   80 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CH-H----HHTTCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC-----GG
T ss_pred             HHHHHHHhcCCCccccc--ch-h----hcCcCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccCCC-----hh
Confidence            34666777788776543  11 1    12378888888888876     33 467788888888888888773     22


Q ss_pred             HhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHH
Q 007526          410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE  489 (600)
Q Consensus       410 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~  489 (600)
                       +..+++|++|++++|++++..     . +.. ++|++|++++|.|++.      ..+..+++|++|++++|++++..  
T Consensus        81 -l~~l~~L~~L~L~~N~l~~l~-----~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~--  144 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRNRLKNLN-----G-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV--  144 (263)
T ss_dssp             -GTTCSSCCEEECCSSCCSCCT-----T-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG--
T ss_pred             -hccCCCCCEEECCCCccCCcC-----c-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh--
Confidence             667788888888888887632     1 222 7788888888888764      23566788888888888887762  


Q ss_pred             HHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          490 FVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       490 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                          .+..+++|++|++++|.|++.  ..+..+     ++|+.|++++|.+...
T Consensus       145 ----~l~~l~~L~~L~L~~N~i~~~--~~l~~l-----~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 ----MLGFLSKLEVLDLHGNEITNT--GGLTRL-----KKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ----GGGGCTTCCEEECTTSCCCBC--TTSTTC-----CCCCEEEEEEEEEECC
T ss_pred             ----HHccCCCCCEEECCCCcCcch--HHhccC-----CCCCEEeCCCCcccCC
Confidence                355668888888888888875  222222     6788888888877654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=1.2e-14  Score=141.33  Aligned_cols=169  Identities=15%  Similarity=0.176  Sum_probs=132.3

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHH
Q 007526          302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE  381 (600)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~  381 (600)
                      .++..++++++.+++..      .+..+++|++|++++|.+++..      .+ ...++|+.|++++|.+++     ++.
T Consensus        19 ~~l~~l~l~~~~i~~~~------~~~~l~~L~~L~l~~n~i~~l~------~l-~~l~~L~~L~L~~N~i~~-----~~~   80 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV------SQKELSGVQNFNGDNSNIQSLA------GM-QFFTNLKELHLSHNQISD-----LSP   80 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE------CHHHHTTCSEEECTTSCCCCCT------TG-GGCTTCCEEECCSSCCCC-----CGG
T ss_pred             HHHHHHHhcCCCccccc------chhhcCcCcEEECcCCCcccch------HH-hhCCCCCEEECCCCccCC-----Chh
Confidence            34556677888876543      1336789999999999988642      22 234589999999999988     333


Q ss_pred             HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526          382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK  461 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  461 (600)
                       +..+++|++|++++|.+++.     +. +.. ++|++|++++|.+++.      ..+..+++|++|++++|+|++..  
T Consensus        81 -l~~l~~L~~L~L~~N~l~~l-----~~-~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~--  144 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRNRLKNL-----NG-IPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV--  144 (263)
T ss_dssp             -GTTCSSCCEEECCSSCCSCC-----TT-CCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG--
T ss_pred             -hccCCCCCEEECCCCccCCc-----Cc-ccc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh--
Confidence             78899999999999998873     22 333 8899999999999874      23677799999999999998752  


Q ss_pred             HHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       462 ~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                          .+..+++|++|++++|.+++.      ..+..+++|+.|++++|.++..
T Consensus       145 ----~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          145 ----MLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ----GGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ----HHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCcccCC
Confidence                457789999999999999887      3456679999999999988764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.41  E-value=2.6e-13  Score=137.33  Aligned_cols=144  Identities=9%  Similarity=0.073  Sum_probs=70.1

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCC---CCChHHHHHHHHHhh--cCCCccEEEccCCCCChHHHH
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGAS  433 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~  433 (600)
                      ++|++|++..|.++..++..+.  ...+|+|++|+|+.+   ...+.++..+...+.  .+++|++|++.+|.+++.+..
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            3566666666666665443332  125666777766421   111111111211121  245566666666655554444


Q ss_pred             HHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCC
Q 007526          434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG  510 (600)
Q Consensus       434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  510 (600)
                      .++.. ..+++|++|+|+.|.+++.+...+...+..+++|+.|++++|.|++.+...+...+     ..++++++++
T Consensus       271 ~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~  341 (362)
T 2ra8_A          271 MFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred             HHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence            44332 12355555666555555555555554444455555555555555555555544431     2345555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.41  E-value=4.9e-13  Score=135.28  Aligned_cols=220  Identities=13%  Similarity=0.174  Sum_probs=111.4

Q ss_pred             CCccEEEccCCCCC-h---HHHHHHHHHHhhCCCcCEEEeecCCCChH-----HHHHHHHHHhcCCCccEEeecCCC-CC
Q 007526          218 IALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-ID  287 (600)
Q Consensus       218 ~~L~~L~Ls~n~l~-~---~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~-i~  287 (600)
                      ..++.|.+...... +   .....+...+.++++|+.|.+.+......     ....+...+..+++|+.|+|++|. +.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            45788888765443 1   23444554455567888888765432110     001133444555666666665541 11


Q ss_pred             hhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCC--CC-CchHHHHHHHhhhcCCCcccEE
Q 007526          288 YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--SI-GDEGIRALMSGLSSRKGKLAVL  364 (600)
Q Consensus       288 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l-~~~~~~~l~~~l~~~~~~L~~L  364 (600)
                            ++. + ..++|++|++..|.++..++..+..  ..+|+|++|+|+.+  .. .+.++..               
T Consensus       187 ------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~---------------  241 (362)
T 2ra8_A          187 ------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNV---------------  241 (362)
T ss_dssp             ------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGG---------------
T ss_pred             ------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHH---------------
Confidence                  000 1 2445555555555555444433321  13455555554321  10 1111111               


Q ss_pred             ECcCCCCChhhHHHHHHHH--HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC
Q 007526          365 DIGNNSISAKGAFHVAEYI--KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN  442 (600)
Q Consensus       365 ~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  442 (600)
                                    +...+  ..+|+|++|+|.+|.+++.+...+..+ ..+++|++|+|+.|.+++.+...+...+..+
T Consensus       242 --------------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l  306 (362)
T 2ra8_A          242 --------------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKI  306 (362)
T ss_dssp             --------------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred             --------------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence                          11111  135666666666666666544433332 2345666666666666666666665555555


Q ss_pred             CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcC
Q 007526          443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ  482 (600)
Q Consensus       443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  482 (600)
                      ++|+.|+|++|.|++.++..+...+     ...+++++++
T Consensus       307 ~~L~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~  341 (362)
T 2ra8_A          307 KHLKFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ  341 (362)
T ss_dssp             TTCSEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred             CcceEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence            6677777776667666666665542     3446666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=2.2e-15  Score=162.41  Aligned_cols=106  Identities=19%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      .|+.|++++|.|+.     ++. +..+++|+.|++++|.|+.     ++..+..+++|++|+|++|.|+..     . .+
T Consensus       442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l  504 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV  504 (567)
T ss_dssp             TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred             CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence            46677777776665     333 5556677777777776663     334455567777777777766642     1 34


Q ss_pred             hhCCCccEEeccCcCCChhH-HHHHHHHHhhCCCccEEEccCCCCChH
Q 007526          468 KFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDE  514 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~  514 (600)
                      ..+++|++|++++|.|++.. +..    +..+++|+.|+|++|.+++.
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCCCC
Confidence            55667777777777766553 322    34457777777777766653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=7.1e-15  Score=150.11  Aligned_cols=160  Identities=21%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH-hCCCCcEEEccCCCCChHHHHHHHHHh
Q 007526          333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADAL  411 (600)
Q Consensus       333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l  411 (600)
                      +.++++++.++.     ++..+   ...++.|+|++|.++..    .+..+. .+++|++|+|++|.|+..    ....+
T Consensus        21 ~~l~c~~~~l~~-----iP~~~---~~~l~~L~Ls~N~l~~l----~~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~   84 (361)
T 2xot_A           21 NILSCSKQQLPN-----VPQSL---PSYTALLDLSHNNLSRL----RAEWTPTRLTNLHSLLLSHNHLNFI----SSEAF   84 (361)
T ss_dssp             TEEECCSSCCSS-----CCSSC---CTTCSEEECCSSCCCEE----CTTSSSSCCTTCCEEECCSSCCCEE----CTTTT
T ss_pred             CEEEeCCCCcCc-----cCccC---CCCCCEEECCCCCCCcc----ChhhhhhcccccCEEECCCCcCCcc----Chhhc
Confidence            466777666654     11111   12466777777766653    112233 566666666666666653    12234


Q ss_pred             hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHH
Q 007526          412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV  491 (600)
Q Consensus       412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l  491 (600)
                      ..+++|++|+|++|+|+....    ..+..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+......+
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~  156 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVELI  156 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGGT
T ss_pred             cCCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHHh
Confidence            555666666666666654321    223344666666666666554321    122344556666666665554433222


Q ss_pred             HHHHhhCCCccEEEccCCCCChHHHH
Q 007526          492 ADMLRYNNTISILDLRANGLRDEGAK  517 (600)
Q Consensus       492 ~~~l~~~~~L~~L~Ls~n~i~~~~~~  517 (600)
                      .. +..+++|+.|+|++|.|+.....
T Consensus       157 ~~-~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          157 KD-GNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             C-----CTTCCEEECCSSCCCCCCHH
T ss_pred             cC-cccCCcCCEEECCCCCCCccCHH
Confidence            10 12235555555555555544333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.35  E-value=2.7e-14  Score=145.76  Aligned_cols=180  Identities=14%  Similarity=0.051  Sum_probs=101.4

Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH
Q 007526          305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK  384 (600)
Q Consensus       305 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  384 (600)
                      +.++++++.++..+.     .  -.+.++.|+|++|.++......    +....++|+.|+|++|.|+..    .+..+.
T Consensus        21 ~~l~c~~~~l~~iP~-----~--~~~~l~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~L~~N~i~~i----~~~~~~   85 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-----S--LPSYTALLDLSHNNLSRLRAEW----TPTRLTNLHSLLLSHNHLNFI----SSEAFV   85 (361)
T ss_dssp             TEEECCSSCCSSCCS-----S--CCTTCSEEECCSSCCCEECTTS----SSSCCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred             CEEEeCCCCcCccCc-----c--CCCCCCEEECCCCCCCccChhh----hhhcccccCEEECCCCcCCcc----Chhhcc
Confidence            566777766654331     1  1234677777777766532111    111334677777777777653    123456


Q ss_pred             hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526          385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS  464 (600)
Q Consensus       385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  464 (600)
                      .+++|++|+|++|.|+..    ....+..+++|++|+|++|.|+....    ..+..+++|++|+|++|.|+......+.
T Consensus        86 ~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~  157 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVVVDR----NAFEDMAQLQKLYLSQNQISRFPVELIK  157 (361)
T ss_dssp             TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred             CCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccEECH----HHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence            667777777777776653    12234556777777777777765322    2344457777777777766653322211


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCC--ccEEEccCCCCC
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT--ISILDLRANGLR  512 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~n~i~  512 (600)
                       .+..+++|++|++++|.|+......+..+    +.  ++.|+|++|.+.
T Consensus       158 -~~~~l~~L~~L~L~~N~l~~l~~~~~~~l----~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          158 -DGNKLPKLMLLDLSSNKLKKLPLTDLQKL----PAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             -----CTTCCEEECCSSCCCCCCHHHHHHS----CHHHHTTEECCSSCEE
T ss_pred             -CcccCCcCCEEECCCCCCCccCHHHhhhc----cHhhcceEEecCCCcc
Confidence             11345677777777777776655544433    44  366777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.32  E-value=6e-14  Score=133.40  Aligned_cols=62  Identities=19%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                      +|+.|++++|.++..    .+..+..+++|++|+|++|.|+..    ....+..+++|++|++++|.|+.
T Consensus        41 ~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i----~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           41 NAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGAL----PVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCc----ChhhcccCCCcCEEECCCCcCCc
Confidence            455555555555542    123344455555555555555431    01123334455555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=1.5e-14  Score=155.86  Aligned_cols=126  Identities=12%  Similarity=0.148  Sum_probs=93.7

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .|+.|++++|.++.     ++. +..+++|+.|+|++|.|+.     ++..+..+++|++|+|++|.|+..     + .+
T Consensus       442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l  504 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV  504 (567)
T ss_dssp             TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred             CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence            58888888888877     554 7788888999998888884     566777888899999999888862     2 46


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEc
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL  506 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L  506 (600)
                      ..+++|++|+|++|.|+...   ....+..+++|++|++++|.+++... .+...+..+++|+.|++
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEEG-IQERLAEMLPSVSSILT  567 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCcc-HHHHHHHHCcccCccCC
Confidence            67788999999998887642   02345677889999999998866532 22334445688888875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.30  E-value=2.9e-14  Score=134.70  Aligned_cols=151  Identities=19%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhh
Q 007526          333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK  412 (600)
Q Consensus       333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  412 (600)
                      +.++++++.++..     +..+   .+.++.|++++|.++..    .+..+..+++|++|+|++|.|+..    .+..+.
T Consensus        14 ~~v~c~~~~l~~i-----P~~l---~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~   77 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-----PTNL---PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ   77 (220)
T ss_dssp             TEEECTTSCCSSC-----CSSC---CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred             CEEEcCCCCcCcC-----CCcc---CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence            4566666665541     1111   13566666666666652    112345566666666666666542    233445


Q ss_pred             cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526          413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA  492 (600)
Q Consensus       413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~  492 (600)
                      .+++|++|+|++|.|+....    ..+..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+......  
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~--  147 (220)
T 2v9t_B           78 GLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTIAKGT--  147 (220)
T ss_dssp             TCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT--
T ss_pred             CCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEECHHH--
Confidence            55666666666666654211    123334556666666665544321    12233445555555555554443222  


Q ss_pred             HHHhhCCCccEEEccCCCC
Q 007526          493 DMLRYNNTISILDLRANGL  511 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n~i  511 (600)
                        +..+++|++|++++|.+
T Consensus       148 --~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          148 --FSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             --TTTCTTCCEEECCSSCE
T ss_pred             --HhCCCCCCEEEeCCCCc
Confidence              22235555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=2.3e-12  Score=113.53  Aligned_cols=132  Identities=15%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      ++|+.|++++|.+++..   ++..+..+++|++|++++|.+++.      ..+..+++|++|++++|.++..    ++..
T Consensus        17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~   83 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL   83 (149)
T ss_dssp             GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred             ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence            35666666666665110   333445566666777766666652      3455566666666666666653    2223


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEcc
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR  507 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  507 (600)
                      +..+++|++|++++|.+++...   ...+..+++|++|++++|.+++.... ....+..+++|++|+++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDY-RENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHHHCTTCCEETTB
T ss_pred             hhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHH-HHHHHHHCCCcccccCC
Confidence            3334666666666666654311   12334556666666666666554321 11223344666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.29  E-value=2.2e-13  Score=151.37  Aligned_cols=15  Identities=7%  Similarity=0.071  Sum_probs=0.0

Q ss_pred             CCcCEEEeecCCCCh
Q 007526          246 AGVERLQLSSVDLRD  260 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~  260 (600)
                      +.++.|+|.++.+..
T Consensus       173 ~~~~~l~L~~n~~~~  187 (727)
T 4b8c_D          173 PLTPKIELFANGKDE  187 (727)
T ss_dssp             ---------------
T ss_pred             CccceEEeeCCCCCc
Confidence            567778887777665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.28  E-value=6e-13  Score=119.87  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV  438 (600)
Q Consensus       359 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  438 (600)
                      ++|+.|++++|.+++..   ++..+..+++|++|++++|.+++.      ..+..+++|++|++++|.++..    ++..
T Consensus        24 ~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~   90 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDML   90 (168)
T ss_dssp             TSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHH
T ss_pred             ccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHH
Confidence            35666666666555110   333345556666666666666542      3344556666666666666542    1222


Q ss_pred             hhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      +..+++|++|++++|.|++....   ..+..+++|++|++++|.++.... .....+..+++|++|++++|.+.
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred             HhhCCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence            33346666666666665542110   223445566666666665544322 11123344466666666655544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.28  E-value=5.5e-14  Score=132.76  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=71.7

Q ss_pred             CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhh
Q 007526          333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK  412 (600)
Q Consensus       333 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~  412 (600)
                      +.+++++|.++.     +...+   ...++.|++++|.++....   ...+..+++|++|+|++|.|+..    ....+.
T Consensus        14 ~~l~~s~n~l~~-----iP~~~---~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~   78 (220)
T 2v70_A           14 TTVDCSNQKLNK-----IPEHI---PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDI----EEGAFE   78 (220)
T ss_dssp             TEEECCSSCCSS-----CCSCC---CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred             CEeEeCCCCccc-----CccCC---CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEE----CHHHhC
Confidence            466666666554     11111   1245666666666655200   01245556666666666665542    112344


Q ss_pred             cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526          413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA  492 (600)
Q Consensus       413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~  492 (600)
                      .+++|++|++++|.++....    ..+..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+...+..  
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~--  148 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQITTVAPGA--  148 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCCCBCTTT--
T ss_pred             CCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCCEECHHH--
Confidence            45556666666665554321    223344555555555555543311    11233445555555555554443222  


Q ss_pred             HHHhhCCCccEEEccCCCCC
Q 007526          493 DMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n~i~  512 (600)
                        +..+++|++|++++|.+.
T Consensus       149 --~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          149 --FDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             --TTTCTTCCEEECCSCCEE
T ss_pred             --hcCCCCCCEEEecCcCCc
Confidence              222345555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.28  E-value=6e-14  Score=131.35  Aligned_cols=154  Identities=15%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +|++|++++|.++..    .+..+..+++|++|++++|.++..    ....+..+++|++|++++|.++....    ..+
T Consensus        29 ~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~   96 (208)
T 2o6s_A           29 QTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQLQSLPN----GVF   96 (208)
T ss_dssp             TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred             CCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCcc----ChhhcCCCCCcCEEECCCCcCCccCH----hHh
Confidence            456666666655542    112244556666666666665542    11223445666666666666654211    223


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|++++|.|+....    ..+..+++|++|++++|.+++.....    +..+++|++|++++|.+...     
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~~~-----  163 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPD----GVFDKLTQLKDLRLYQNQLKSVPDGV----FDRLTSLQYIWLHDNPWDCT-----  163 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSCCBCCC-----
T ss_pred             cCccCCCEEEcCCCcCcccCH----hHhccCCcCCEEECCCCccceeCHHH----hccCCCccEEEecCCCeecC-----
Confidence            444666666666666654321    12244556666666666665543322    33446677777776655531     


Q ss_pred             HHHHhhcCccccEEEccCCCCChhHH
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRDDGA  545 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~~~~  545 (600)
                        .     +.|+.|+++.|++++..+
T Consensus       164 --~-----~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          164 --C-----PGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             --T-----TTTHHHHHHHHHCTTTBB
T ss_pred             --C-----CCHHHHHHHHHhCCceee
Confidence              0     345556666665555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.27  E-value=2.3e-13  Score=129.28  Aligned_cols=165  Identities=15%  Similarity=0.083  Sum_probs=92.9

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ..+.++.+++.++.     ++..  -.++|++|+|++|.+...    .+..+..+++|++|++++|.|+....    ..+
T Consensus        20 s~~~v~c~~~~l~~-----ip~~--~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~   84 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-----VPAG--IPTNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPV----GVF   84 (229)
T ss_dssp             ETTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred             eCCEeEccCCCcCc-----cCCC--CCCCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcCh----hhc
Confidence            45566666666555     3321  125677777777766653    23345556677777777777654321    223


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+...     ..+..+++|++|+|++|.|+......+
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~~~~~~~~  155 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPS----AVFDRLVHLKELFMCCNKLTELP-----RGIERLTHLTHLALDQNQLKSIPHGAF  155 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCSCC-----TTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred             ccCCCcCEEECCCCcCCccCh----hHhCcchhhCeEeccCCcccccC-----cccccCCCCCEEECCCCcCCccCHHHH
Confidence            445677777777776654321    12245567777777777766432     223455777777777777665433222


Q ss_pred             HHHHhhcCccccEEEccCCCCChh--HHHHHHHHHH
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRDD--GAFAIAQALK  553 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~~--~~~~l~~~~~  553 (600)
                      ...     ++|++|++++|.+...  ....+..+..
T Consensus       156 ~~l-----~~L~~L~l~~N~~~c~c~~~~~l~~~~~  186 (229)
T 3e6j_A          156 DRL-----SSLTHAYLFGNPWDCECRDIMYLRNWVA  186 (229)
T ss_dssp             TTC-----TTCCEEECTTSCBCTTBGGGHHHHHHHH
T ss_pred             hCC-----CCCCEEEeeCCCccCCcchhHHHHHHHH
Confidence            222     5677777777776643  2334444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.26  E-value=3e-14  Score=134.56  Aligned_cols=166  Identities=17%  Similarity=0.150  Sum_probs=119.7

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .-+.++++++.++.     ++..+  .+++++|++++|.|+..    ....+..+++|++|++++|.|+...    +..+
T Consensus        12 ~~~~v~c~~~~l~~-----iP~~l--~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~----~~~~   76 (220)
T 2v9t_B           12 SNNIVDCRGKGLTE-----IPTNL--PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELA----PDAF   76 (220)
T ss_dssp             ETTEEECTTSCCSS-----CCSSC--CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEEC----TTTT
T ss_pred             CCCEEEcCCCCcCc-----CCCcc--CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcC----HHHh
Confidence            45688999988887     44322  26899999999998873    2235667889999999999998743    3445


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+...+..    +..+++|++|+|++|.|+......+
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~  148 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTF  148 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             hCCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHH
Confidence            666999999999998875432    22356789999999999988775544    4455899999999998887654434


Q ss_pred             HHHHhhcCccccEEEccCCCCCh-hHHHHHHHHHH
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALK  553 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~-~~~~~l~~~~~  553 (600)
                      ...     ++|++|++++|++.. -....+...+.
T Consensus       149 ~~l-----~~L~~L~L~~N~~~c~c~l~~l~~~l~  178 (220)
T 2v9t_B          149 SPL-----RAIQTMHLAQNPFICDCHLKWLADYLH  178 (220)
T ss_dssp             TTC-----TTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             hCC-----CCCCEEEeCCCCcCCCCccHHHHHHHH
Confidence            333     679999999998753 33344444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.26  E-value=3.1e-13  Score=127.51  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=95.5

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .-+.+++++|.++.     ++..+  .+.+++|++++|.++....   ...+..+++|++|++++|.|+....    ..+
T Consensus        12 ~~~~l~~s~n~l~~-----iP~~~--~~~~~~L~L~~N~l~~~~~---~~~~~~l~~L~~L~L~~N~i~~i~~----~~~   77 (220)
T 2v70_A           12 EGTTVDCSNQKLNK-----IPEHI--PQYTAELRLNNNEFTVLEA---TGIFKKLPQLRKINFSNNKITDIEE----GAF   77 (220)
T ss_dssp             ETTEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCEECC---CCCGGGCTTCCEEECCSSCCCEECT----TTT
T ss_pred             CCCEeEeCCCCccc-----CccCC--CCCCCEEEcCCCcCCccCc---hhhhccCCCCCEEECCCCcCCEECH----HHh
Confidence            34577777777765     43221  2356777777777765210   1124556777777777777765422    234


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+...+..+    ..+++|++|+|++|.|+...+..+
T Consensus        78 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A           78 EGASGVNEILLTSNRLENVQH----KMFKGLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCG----GGGTTCSSCCEEECTTSCCCCBCTTSS----TTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             CCCCCCCEEECCCCccCccCH----hHhcCCcCCCEEECCCCcCCeECHhHc----CCCccCCEEECCCCcCCEECHHHh
Confidence            455777777777777765422    223556777777777777776544333    344777777777777776544434


Q ss_pred             HHHHhhcCccccEEEccCCCCC
Q 007526          520 AQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      ...     ++|++|++++|.+.
T Consensus       150 ~~l-----~~L~~L~L~~N~l~  166 (220)
T 2v70_A          150 DTL-----HSLSTLNLLANPFN  166 (220)
T ss_dssp             TTC-----TTCCEEECCSCCEE
T ss_pred             cCC-----CCCCEEEecCcCCc
Confidence            333     66777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.24  E-value=1.7e-12  Score=114.37  Aligned_cols=129  Identities=14%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             CCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHH
Q 007526          387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV  466 (600)
Q Consensus       387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  466 (600)
                      ++|++|++++|.+++..   ++..+..+++|++|++++|.++..      ..+..+++|++|++++|.+++.    +...
T Consensus        17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~   83 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL   83 (149)
T ss_dssp             GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred             ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence            56777777777776210   333445567777777777777653      3455557777777777776653    2233


Q ss_pred             HhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEcc
Q 007526          467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLA  536 (600)
Q Consensus       467 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---~~l~~~l~~~n~~L~~L~ls  536 (600)
                      +..+++|++|++++|.+++...   ...+..+++|++|++++|.+++...   ..+...     ++|++||++
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~  148 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGY  148 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTB
T ss_pred             hhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCC
Confidence            3445677777777777665421   1234455677777777776665433   223322     566666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=6.8e-13  Score=119.53  Aligned_cols=135  Identities=16%  Similarity=0.060  Sum_probs=85.9

Q ss_pred             CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526          386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE  465 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  465 (600)
                      .++|++|++++|.+++..   ++..+..+++|++|++++|.++..      ..+..+++|++|++++|.++..    +..
T Consensus        23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~   89 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM   89 (168)
T ss_dssp             TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred             cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence            467888888888776211   334455667788888888877763      3455667788888888877653    223


Q ss_pred             HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccCCCCC
Q 007526          466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~---~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      .+..+++|++|++++|.+++....   ..+..+++|++|++++|.+++...   ..+...     ++|++|++++|.+.
T Consensus        90 ~~~~l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~  160 (168)
T 2ell_A           90 LAEKLPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHCTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSC
T ss_pred             HHhhCCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChh
Confidence            334567777888887777664321   234455777777777777765433   122222     66777777777665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=5.3e-13  Score=148.36  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=92.7

Q ss_pred             HHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChh
Q 007526          210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS  289 (600)
Q Consensus       210 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  289 (600)
                      ....+..++.|+.|+|++|.+..     ++..+..+++|++|+|++|.++.     ++..+..+++|++|+|++|.|+  
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~--  283 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT--  283 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS--
T ss_pred             ChhhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC--
Confidence            34455667788888888888764     33444567888888888888874     3444566688888888888885  


Q ss_pred             hHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC
Q 007526          290 GFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN  369 (600)
Q Consensus       290 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  369 (600)
                         .++..+..+++|++|+|++|.++..+     ..+..+++|+.|+|++|.+++.....+...-.    .+..|++++|
T Consensus       284 ---~lp~~~~~l~~L~~L~L~~N~l~~lp-----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N  351 (727)
T 4b8c_D          284 ---SLPAELGSCFQLKYFYFFDNMVTTLP-----WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDN  351 (727)
T ss_dssp             ---SCCSSGGGGTTCSEEECCSSCCCCCC-----SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHC
T ss_pred             ---ccChhhcCCCCCCEEECCCCCCCccC-----hhhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccC
Confidence               34556677888888888888876433     34667888888888888887653333321100    2233556666


Q ss_pred             CCChhhHHHHHHHHHhCCCCcEEEccCC
Q 007526          370 SISAKGAFHVAEYIKNCKSLLWINLYMN  397 (600)
Q Consensus       370 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  397 (600)
                      .++..          ....|+.|+++.|
T Consensus       352 ~l~~~----------~p~~l~~l~l~~n  369 (727)
T 4b8c_D          352 RPEIP----------LPHERRFIEINTD  369 (727)
T ss_dssp             CCCCC----------CCCC---------
T ss_pred             cccCc----------CccccceeEeecc
Confidence            65542          1234556666555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.20  E-value=4.3e-13  Score=124.41  Aligned_cols=16  Identities=19%  Similarity=0.190  Sum_probs=7.0

Q ss_pred             CCCCcEEEccCCCCCh
Q 007526          386 CKSLLWINLYMNDIGD  401 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~  401 (600)
                      +++|++|++++|.+++
T Consensus        92 ~~~L~~L~L~~N~l~~  107 (198)
T 1ds9_A           92 ADTLEELWISYNQIAS  107 (198)
T ss_dssp             HHHCSEEEEEEEECCC
T ss_pred             CCcCCEEECcCCcCCc
Confidence            3344444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.20  E-value=4.4e-13  Score=125.42  Aligned_cols=155  Identities=17%  Similarity=0.140  Sum_probs=112.8

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .-+.++.+++.++.     ++.  ...++|++|++++|.+++.    ....+..+++|++|++++|.++...    ...+
T Consensus         8 ~~~~v~c~~~~l~~-----~p~--~~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~   72 (208)
T 2o6s_A            8 SGTTVECYSQGRTS-----VPT--GIPAQTTYLDLETNSLKSL----PNGVFDELTSLTQLYLGGNKLQSLP----NGVF   72 (208)
T ss_dssp             ETTEEECCSSCCSS-----CCS--CCCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCC----TTTT
T ss_pred             CCCEEEecCCCccC-----CCC--CCCCCCcEEEcCCCccCcC----ChhhhcccccCcEEECCCCccCccC----hhhc
Confidence            45677777777766     332  2246899999999998863    2234567899999999999988642    2334


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHH
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL  519 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  519 (600)
                      ..+++|++|++++|.++....    ..+..+++|++|++++|.++......    +..+++|++|++++|.+++.....+
T Consensus        73 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~  144 (208)
T 2o6s_A           73 NKLTSLTYLNLSTNQLQSLPN----GVFDKLTQLKELALNTNQLQSLPDGV----FDKLTQLKDLRLYQNQLKSVPDGVF  144 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCCCcCEEECCCCcCCccCH----hHhcCccCCCEEEcCCCcCcccCHhH----hccCCcCCEEECCCCccceeCHHHh
Confidence            567999999999998875422    22456789999999999988764433    4456899999999998887544333


Q ss_pred             HHHHhhcCccccEEEccCCCCCh
Q 007526          520 AQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       520 ~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                      ...     ++|++|++++|.+..
T Consensus       145 ~~l-----~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          145 DRL-----TSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTC-----TTCCEEECCSCCBCC
T ss_pred             ccC-----CCccEEEecCCCeec
Confidence            332     789999999998875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=5.6e-13  Score=123.62  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             HHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526          382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK  461 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  461 (600)
                      .+..+++|++|++++|.+++     ++ .+..+++|++|++++|.++..     +..+..+++|++|++++|.+++..  
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~l-----~~~~~~~~~L~~L~L~~N~l~~l~--  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKKI-----ENLDAVADTLEELWISYNQIASLS--  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECSC-----SSHHHHHHHCSEEEEEEEECCCHH--
T ss_pred             HHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCcccc-----cchhhcCCcCCEEECcCCcCCcCC--
Confidence            44445555555555554443     11 233334555555555544421     111122245555555555554421  


Q ss_pred             HHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       462 ~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      .    +..+++|++|++++|.+++.+..   ..+..+++|++|++++|.+++
T Consensus       110 ~----~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          110 G----IEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             H----HHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHHH
T ss_pred             c----cccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCcccc
Confidence            1    22334555555555555543221   123334555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.16  E-value=5.1e-12  Score=114.70  Aligned_cols=112  Identities=18%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      +|++|++++|.+++.      ..+..+++|++|++++|.++.....    .+..+++|++|++++|.|++...  + ..+
T Consensus        43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~--~-~~l  109 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEG----LDQALPDLTELILTNNSLVELGD--L-DPL  109 (176)
T ss_dssp             CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSC----HHHHCTTCCEEECCSCCCCCGGG--G-GGG
T ss_pred             CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcc----hhhcCCCCCEEECCCCcCCcchh--h-Hhh
Confidence            455555555554441      2333445555555555555432111    11223555555555555543211  0 123


Q ss_pred             hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      ..+++|++|++++|.++..... ....+..+++|+.||+++|.+.+
T Consensus       110 ~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          110 ASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             GGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHHH
T ss_pred             hcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHHH
Confidence            3445555555555555433211 11223344566666665555443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=6.9e-14  Score=142.15  Aligned_cols=104  Identities=13%  Similarity=0.075  Sum_probs=49.0

Q ss_pred             cEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHH-HHHh
Q 007526          193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLK  271 (600)
Q Consensus       193 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~  271 (600)
                      ++++.++++++..     +..+  .+++++|+|++|+|+...    .+.+..+++|++|+|++|++...    +. ..+.
T Consensus        12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEV----IEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred             CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence            4566666665521     1111  135667777776665421    12234456666666666665321    10 1122


Q ss_pred             cCCCccE-EeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          272 NNSILRV-LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG  315 (600)
Q Consensus       272 ~~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  315 (600)
                      +++++.+ +.+.+|+++...    +..+..+++|++|++++|.++
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n~l~  117 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNTGIK  117 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEECCS
T ss_pred             cchhhhhhhcccCCcccccC----chhhhhccccccccccccccc
Confidence            3344443 444455553211    223334555666666655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.14  E-value=1.3e-11  Score=111.93  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +|++|++++|.++.     + ..+..+++|++|++++|.++...    ...+..+++|++|++++|.++....   ...+
T Consensus        43 ~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~~~---~~~l  109 (176)
T 1a9n_A           43 QFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICRIG----EGLDQALPDLTELILTNNSLVELGD---LDPL  109 (176)
T ss_dssp             CCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCEEC----SCHHHHCTTCCEEECCSCCCCCGGG---GGGG
T ss_pred             CCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccccC----cchhhcCCCCCEEECCCCcCCcchh---hHhh
Confidence            45555555554444     1 22344455555555555554320    0112334555555555555543211   0123


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCC
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI  483 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i  483 (600)
                      ..+++|++|++++|+++..... -...+..+++|++|++++|.+
T Consensus       110 ~~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          110 ASLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             GGCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCH
T ss_pred             hcCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCH
Confidence            4445566666666655432111 112234555666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.10  E-value=3.8e-14  Score=144.09  Aligned_cols=238  Identities=13%  Similarity=0.035  Sum_probs=138.4

Q ss_pred             CEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHH-HHHhhCCCccEEEccCCCCCh-HHHHHHHHHh
Q 007526          249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLA-EALLENSTIRSLHLNGNYGGA-LGANALAKGL  326 (600)
Q Consensus       249 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~L~~n~l~~-~~~~~l~~~l  326 (600)
                      +.++.++++++..     +..+  .+++++|+|++|+|+.     ++ .+|..+++|++|+|++|.+.. .+.    .++
T Consensus        12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~-----i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f   75 (350)
T 4ay9_X           12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRV-----IQKGAFSGFGDLEKIEISQNDVLEVIEA----DVF   75 (350)
T ss_dssp             TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSE-----ECTTSSTTCTTCCEEEEECCTTCCEECT----TSB
T ss_pred             CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCC-----cCHHHHcCCCCCCEEECcCCCCCCccCh----hHh
Confidence            5677888887762     2222  2578899999998853     22 245678888888888887633 221    234


Q ss_pred             hcCCCCCE-EEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccC-CCCChHHH
Q 007526          327 EGNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGA  404 (600)
Q Consensus       327 ~~~~~L~~-L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~  404 (600)
                      .+++++.+ +.+++|++......     .....++|++|++++|.+....    ...+....++..|++.+ +.+.... 
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~-----~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~~~i~~l~-  145 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPE-----AFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDNINIHTIE-  145 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTT-----SBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESCTTCCEEC-
T ss_pred             hcchhhhhhhcccCCcccccCch-----hhhhccccccccccccccccCC----chhhcccchhhhhhhcccccccccc-
Confidence            56667665 55566777653111     1134457888888888776521    11122344667777755 3555421 


Q ss_pred             HHHHHHhhcC-CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC-CCCChhHHHHHHHHHhhCCCccEEeccCcC
Q 007526          405 EKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQ  482 (600)
Q Consensus       405 ~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  482 (600)
                         ...+..+ ..++.|++++|.|+...     .......+|++|++++ |.++....    ..+..+++|++|++++|+
T Consensus       146 ---~~~f~~~~~~l~~L~L~~N~i~~i~-----~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          146 ---RNSFVGLSFESVILWLNKNGIQEIH-----NSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTR  213 (350)
T ss_dssp             ---TTSSTTSBSSCEEEECCSSCCCEEC-----TTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSC
T ss_pred             ---ccchhhcchhhhhhccccccccCCC-----hhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCC
Confidence               1122222 35778888888887532     2222336788888864 55554322    223556788888888888


Q ss_pred             CChhHHHHHHHHHhhCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526          483 IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN  538 (600)
Q Consensus       483 i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~n~~L~~L~ls~n  538 (600)
                      |+......       ..+|+.|.+.++ .++...  .+...     ++|+.+++.++
T Consensus       214 l~~lp~~~-------~~~L~~L~~l~~~~l~~lP--~l~~l-----~~L~~l~l~~~  256 (350)
T 4ay9_X          214 IHSLPSYG-------LENLKKLRARSTYNLKKLP--TLEKL-----VALMEASLTYP  256 (350)
T ss_dssp             CCCCCSSS-------CTTCCEEECTTCTTCCCCC--CTTTC-----CSCCEEECSCH
T ss_pred             cCccChhh-------hccchHhhhccCCCcCcCC--CchhC-----cChhhCcCCCC
Confidence            87664322       255666665554 343321  12221     67888887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.04  E-value=7.1e-12  Score=126.04  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCcc-EEeccCcCCChhHHHHHH
Q 007526          414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN-TLKLGWCQIGASGAEFVA  492 (600)
Q Consensus       414 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~-~L~l~~n~i~~~~~~~l~  492 (600)
                      +++|++|++++|.++..+.    .++..|++|++|+|.+| +...+.    .++..|.+|+ .+++.+ .++..+..+  
T Consensus       225 ~~~L~~l~L~~n~i~~I~~----~aF~~~~~L~~l~l~~n-i~~I~~----~aF~~~~~L~~~l~l~~-~l~~I~~~a--  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPD----FTFAQKKYLLKIKLPHN-LKTIGQ----RVFSNCGRLAGTLELPA-SVTAIEFGA--  292 (329)
T ss_dssp             CTTCCEEECTTBCCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEEECT-TCCEECTTT--
T ss_pred             cCCCeEEECCCCCcceecH----hhhhCCCCCCEEECCcc-cceehH----HHhhCChhccEEEEEcc-cceEEchhh--
Confidence            4556666665555554322    23444556666666555 333222    2234455666 666655 444443322  


Q ss_pred             HHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE
Q 007526          493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID  534 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~  534 (600)
                        +..|++|+.|++++|.++..+...|..+     ++|++++
T Consensus       293 --F~~c~~L~~l~l~~n~i~~I~~~aF~~~-----~~L~~ly  327 (329)
T 3sb4_A          293 --FMGCDNLRYVLATGDKITTLGDELFGNG-----VPSKLIY  327 (329)
T ss_dssp             --TTTCTTEEEEEECSSCCCEECTTTTCTT-----CCCCEEE
T ss_pred             --hhCCccCCEEEeCCCccCccchhhhcCC-----cchhhhc
Confidence              3344666666666666665554444443     4566554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=2.2e-12  Score=129.74  Aligned_cols=279  Identities=14%  Similarity=0.118  Sum_probs=146.3

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC--hHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR--DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE  296 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  296 (600)
                      ++++|.++++ +.......+...   +++|+.|+|++|++.  ....       ...+.+..+.+..+.|.+       .
T Consensus        26 ~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~~-------~~~~~~~~~~~~~~~I~~-------~   87 (329)
T 3sb4_A           26 SITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGKA-------GTYPNGKFYIYMANFVPA-------Y   87 (329)
T ss_dssp             HCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEESS-------SSSGGGCCEEECTTEECT-------T
T ss_pred             ceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCcc-------ccccccccccccccccCH-------H
Confidence            4888888865 444433333321   578888888888776  2100       011223445555555543       2


Q ss_pred             HHhh--------CCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcC
Q 007526          297 ALLE--------NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN  368 (600)
Q Consensus       297 ~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  368 (600)
                      ++..        +++|++|++.+ .++..+.    .+|..|++|+.|++..|.+...+...+     ....++..+.+..
T Consensus        88 aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~~~aF-----~~~~~l~~l~~~~  157 (329)
T 3sb4_A           88 AFSNVVNGVTKGKQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLLPEAL-----ADSVTAIFIPLGS  157 (329)
T ss_dssp             TTEEEETTEEEECTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEECTTSS-----CTTTCEEEECTTC
T ss_pred             HhcccccccccccCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccchhhh-----cCCCceEEecCcc
Confidence            3445        78888888887 6665544    346678888888888887654322111     1222455555443


Q ss_pred             CCCChhhHHHH-HHHHHhCCCCc-EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcC
Q 007526          369 NSISAKGAFHV-AEYIKNCKSLL-WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT  446 (600)
Q Consensus       369 n~i~~~~~~~l-~~~l~~~~~L~-~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  446 (600)
                      ..... +...+ ...+..+..|+ .+.+....--.   ..+...-....++..+.+.++ +.......+.   ..|++|+
T Consensus       158 ~~~~~-~~~~i~~~~f~~~~~L~~~i~~~~~~~l~---~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~---~~~~~L~  229 (329)
T 3sb4_A          158 SDAYR-FKNRWEHFAFIEGEPLETTIQVGAMGKLE---DEIMKAGLQPRDINFLTIEGK-LDNADFKLIR---DYMPNLV  229 (329)
T ss_dssp             THHHH-TSTTTTTSCEEESCCCEEEEEECTTCCHH---HHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH---HHCTTCC
T ss_pred             hhhhh-ccccccccccccccccceeEEecCCCcHH---HHHhhcccCccccceEEEeee-ecHHHHHHHH---HhcCCCe
Confidence            21000 00000 01123455555 44443321101   011111112355667776654 3333333332   2367777


Q ss_pred             EEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCcc-EEEccCCCCChHHHHHHHHHHhh
Q 007526          447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS-ILDLRANGLRDEGAKCLAQSFKV  525 (600)
Q Consensus       447 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~  525 (600)
                      +++|++|.++..+..    ++..|.+|+.|++.+| +...+..+    +..|++|+ .+++.+ .++..+..+|..+   
T Consensus       230 ~l~L~~n~i~~I~~~----aF~~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c---  296 (329)
T 3sb4_A          230 SLDISKTNATTIPDF----TFAQKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIEFGAFMGC---  296 (329)
T ss_dssp             EEECTTBCCCEECTT----TTTTCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEECTTTTTTC---
T ss_pred             EEECCCCCcceecHh----hhhCCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEchhhhhCC---
Confidence            777777766654332    2356677777777776 55554433    34457777 777776 5555544445443   


Q ss_pred             cCccccEEEccCCCCChhHHHHH
Q 007526          526 VNEALTSIDLAFNEIRDDGAFAI  548 (600)
Q Consensus       526 ~n~~L~~L~ls~n~i~~~~~~~l  548 (600)
                        .+|++|++++|+++..+...+
T Consensus       297 --~~L~~l~l~~n~i~~I~~~aF  317 (329)
T 3sb4_A          297 --DNLRYVLATGDKITTLGDELF  317 (329)
T ss_dssp             --TTEEEEEECSSCCCEECTTTT
T ss_pred             --ccCCEEEeCCCccCccchhhh
Confidence              567777777777765554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=1.1e-11  Score=114.25  Aligned_cols=89  Identities=19%  Similarity=0.178  Sum_probs=40.6

Q ss_pred             hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHH
Q 007526          412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV  491 (600)
Q Consensus       412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l  491 (600)
                      ..+++|++|++++|.|+...    +..+..+++|++|+|++|.|+....    ..+..+++|++|++++|+|+...+.. 
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~-  121 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMPGS-  121 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECTTS-
T ss_pred             ccCCCCCEEECCCCCCCCcC----HhHcCCcccCCEEECCCCcCCccCH----HHhcCCCCCCEEECCCCcCCeeCHHH-
Confidence            33445555555555544321    1223333555555555555443321    11233445555555555555443222 


Q ss_pred             HHHHhhCCCccEEEccCCCCC
Q 007526          492 ADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       492 ~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                         +..+++|++|++++|.++
T Consensus       122 ---~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          122 ---FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             ---STTCTTCCEEECTTCCBC
T ss_pred             ---hhcCCCCCEEEeCCCCcc
Confidence               223355666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=1.5e-11  Score=113.35  Aligned_cols=131  Identities=16%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526          390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF  469 (600)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  469 (600)
                      +.+++++|.++.     ++..+  ..+|++|++++|.|+.....   ..+..+++|++|+|++|.|+....    ..+..
T Consensus        11 ~~l~~s~~~l~~-----ip~~~--~~~l~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~   76 (192)
T 1w8a_A           11 TTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRISSD---GLFGRLPHLVKLELKRNQLTGIEP----NAFEG   76 (192)
T ss_dssp             TEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBCCS---CSGGGCTTCCEEECCSSCCCCBCT----TTTTT
T ss_pred             CEEEcCCCCcCc-----CccCC--CCCCCEEECCCCcCCccCCc---cccccCCCCCEEECCCCCCCCcCH----hHcCC
Confidence            456666665544     22222  23677777777777653211   124556899999999998876422    33456


Q ss_pred             CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                      +++|++|++++|.|+......    +..+++|++|+|++|.|+...+..+...     ++|++|++++|.+...
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKM----FLGLHQLKTLNLYDNQISCVMPGSFEHL-----NSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSS----STTCTTCCEEECCSSCCCEECTTSSTTC-----TTCCEEECTTCCBCCS
T ss_pred             cccCCEEECCCCcCCccCHHH----hcCCCCCCEEECCCCcCCeeCHHHhhcC-----CCCCEEEeCCCCccCc
Confidence            789999999999998775543    3445899999999999887544444333     6799999999988753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.97  E-value=2.1e-11  Score=112.28  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=16.5

Q ss_pred             CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526          470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL  511 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  511 (600)
                      +++|++|++++|.|+......    +..+++|+.|++++|.+
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          101 LKSLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSCE
T ss_pred             CCCCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCCe
Confidence            344444444444444332221    22235555555555544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.96  E-value=3.2e-11  Score=111.07  Aligned_cols=121  Identities=18%  Similarity=0.239  Sum_probs=75.6

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM  494 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~  494 (600)
                      ++|++|++++|.|+.     ++..+..+++|++|+|++|.|+....    ..+..+++|++|++++|.|+...+..    
T Consensus        31 ~~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~~~----   97 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPPRT----   97 (193)
T ss_dssp             TTCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTT----
T ss_pred             CCCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCHHH----
Confidence            356666666666553     22334555666777776666654322    22345667777788877777665443    


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hhHHHHHHHHHH
Q 007526          495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK  553 (600)
Q Consensus       495 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~-~~~~~~l~~~~~  553 (600)
                      +..+++|++|+|++|.|+......+...     ++|++|++++|.+. +-....+..+..
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~~C~c~l~~l~~~~~  152 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDL-----SALSHLAIGANPLYCDCNMQWLSDWVK  152 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTC-----TTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcC-----ccccEEEeCCCCeecCCcCHHHHHHHH
Confidence            3445899999999999887544333333     77999999999875 333344555444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.91  E-value=1.2e-09  Score=97.10  Aligned_cols=93  Identities=16%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVA  492 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~  492 (600)
                      ..|++||+++|.|++.+...+    ..|++|++|+|++| .|+|.+...+...-..+++|++|++++| .|++.+...+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            356666666666666655432    34566666666666 3666666555432111234666666665 36665554432


Q ss_pred             HHHhhCCCccEEEccCC-CCChHH
Q 007526          493 DMLRYNNTISILDLRAN-GLRDEG  515 (600)
Q Consensus       493 ~~l~~~~~L~~L~Ls~n-~i~~~~  515 (600)
                          ++++|++|++++| .|++.+
T Consensus       137 ----~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          137 ----HFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             ----GCTTCCEEEEESCTTCCCHH
T ss_pred             ----cCCCCCEEECCCCCCCCchH
Confidence                3466666666665 455544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.88  E-value=8.5e-11  Score=106.65  Aligned_cols=130  Identities=15%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ..+.++++++.++.     ++.  ...++|++|++++|.++..    ....+..+++|++|++++|.++....    ..+
T Consensus         8 ~~~~l~~~~~~l~~-----~p~--~~~~~l~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~   72 (177)
T 2o6r_A            8 SGTEIRCNSKGLTS-----VPT--GIPSSATRLELESNKLQSL----PHGVFDKLTQLTKLSLSQNQIQSLPD----GVF   72 (177)
T ss_dssp             ETTEEECCSSCCSS-----CCT--TCCTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred             CCCEEEecCCCCcc-----CCC--CCCCCCcEEEeCCCcccEe----CHHHhcCcccccEEECCCCcceEeCh----hHc
Confidence            45667777776665     331  1235677777777766542    11223445666666666666654211    123


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ..+++|++|++++|.|+....    ..+..+++|++|++++|.++......    +..+++|++|++++|.+.
T Consensus        73 ~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~----~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           73 DKLTKLTILYLHENKLQSLPN----GVFDKLTQLKELALDTNQLKSVPDGI----FDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCBC
T ss_pred             cCCCccCEEECCCCCccccCH----HHhhCCcccCEEECcCCcceEeCHHH----hcCCcccCEEEecCCCee
Confidence            344556666666665543211    11233445555555555544332211    222344445555444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.88  E-value=7.2e-10  Score=98.52  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=45.1

Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHH
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSE  465 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~  465 (600)
                      .|++||+++|.|++.|+..    +..+++|++|+|++| .|++.++..+...-..+++|++|+|++| .|+|.|+..+  
T Consensus        62 ~L~~LDLs~~~Itd~GL~~----L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--  135 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDH----MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--  135 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGG----GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--
T ss_pred             eEeEEeCcCCCccHHHHHH----hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH--
Confidence            4555555555555554433    234555555555555 3555555544431001234555555555 3555555443  


Q ss_pred             HHhhCCCccEEeccCc-CCChh
Q 007526          466 VLKFHGNINTLKLGWC-QIGAS  486 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n-~i~~~  486 (600)
                        ..+++|++|++++| .|++.
T Consensus       136 --~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          136 --HHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             --GGCTTCCEEEEESCTTCCCH
T ss_pred             --hcCCCCCEEECCCCCCCCch
Confidence              23455555555555 34443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.87  E-value=7.4e-11  Score=107.05  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=36.6

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM  494 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~  494 (600)
                      ++|++|++++|.++....    ..+..+++|++|++++|.++....    ..+..+++|++|++++|.++......    
T Consensus        28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~N~l~~~~~~~----   95 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPH----GVFDKLTQLTKLSLSQNQIQSLPD----GVFDKLTKLTILYLHENKLQSLPNGV----   95 (177)
T ss_dssp             TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT----
T ss_pred             CCCcEEEeCCCcccEeCH----HHhcCcccccEEECCCCcceEeCh----hHccCCCccCEEECCCCCccccCHHH----
Confidence            345555555554443211    122333455555555554443211    11233445555555555544432221    


Q ss_pred             HhhCCCccEEEccCCCCCh
Q 007526          495 LRYNNTISILDLRANGLRD  513 (600)
Q Consensus       495 l~~~~~L~~L~Ls~n~i~~  513 (600)
                      +..+++|++|++++|.++.
T Consensus        96 ~~~l~~L~~L~l~~N~l~~  114 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKS  114 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSC
T ss_pred             hhCCcccCEEECcCCcceE
Confidence            2223455555555554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.62  E-value=3e-09  Score=95.60  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=16.6

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCC
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG  400 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  400 (600)
                      .|+.|++++|.|+..    .+..+..+++|++|+|++|+|+
T Consensus        31 ~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~   67 (170)
T 3g39_A           31 TTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLT   67 (170)
T ss_dssp             TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCC
T ss_pred             CCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcC
Confidence            445555555544442    1223344444444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.61  E-value=4.8e-09  Score=94.25  Aligned_cols=122  Identities=16%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ..+.+++++|.++.     ++..+  .++|++|+|++|.|+..    .+..+..+++|++|++++|+|+....    ..+
T Consensus        10 ~~~~l~~s~n~l~~-----ip~~~--~~~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~f   74 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-----VPTGI--PTTTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTVLPA----GVF   74 (170)
T ss_dssp             ETTEEECTTSCCSS-----CCSCC--CTTCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCCCT----TTT
T ss_pred             CCCEEEeCCCCcCc-----cCccC--CCCCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCccCh----hhc
Confidence            34555555555554     33211  24566666666665542    12334455666666666666654321    223


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChh--HHHHHHHHHhhCCC
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS--GAEFVADMLRYNNT  500 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~--~~~~l~~~l~~~~~  500 (600)
                      ..+++|++|+|++|+|+....    ..+..+++|++|++++|.+...  ....+...+...+.
T Consensus        75 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~  133 (170)
T 3g39_A           75 DKLTQLTQLSLNDNQLKSIPR----GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPG  133 (170)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGG
T ss_pred             cCCCCCCEEECCCCccCEeCH----HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcc
Confidence            344666666666665554321    1234455666666666655433  23334444443333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.56  E-value=6.1e-09  Score=93.94  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526          390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF  469 (600)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  469 (600)
                      +.+++++|.++.     ++..+  .++|++|++++|.|+...    +..+..+++|++|+|++|+|+....    ..+..
T Consensus        15 ~~l~~~~n~l~~-----iP~~~--~~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~~   79 (174)
T 2r9u_A           15 TLVNCQNIRLAS-----VPAGI--PTDKQRLWLNNNQITKLE----PGVFDHLVNLQQLYFNSNKLTAIPT----GVFDK   79 (174)
T ss_dssp             SEEECCSSCCSS-----CCSCC--CTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCT----TTTTT
T ss_pred             cEEEeCCCCCCc-----cCCCc--CCCCcEEEeCCCCccccC----HHHhcCCcCCCEEECCCCCCCccCh----hHhCC
Confidence            556666666654     22222  255666666666665431    1223344556666666555543211    11233


Q ss_pred             CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      +++|++|++++|+|+......    +..+++|++|+|++|.+.
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGA----FDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCBC
T ss_pred             cchhhEEECCCCccceeCHHH----hccccCCCEEEeCCCCcc
Confidence            445555555555544332211    222344444444444443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.48  E-value=1.2e-08  Score=91.87  Aligned_cols=85  Identities=18%  Similarity=0.186  Sum_probs=45.0

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      .|+.|++++|.++..    .+..+..+++|++|+|++|.|+..    ....+..+++|++|+|++|+|+....    ..+
T Consensus        34 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~  101 (174)
T 2r9u_A           34 DKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDNHLKSIPR----GAF  101 (174)
T ss_dssp             TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred             CCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCCccceeCH----HHh
Confidence            566666666666552    233455566666666666666542    11123445666666666666554211    123


Q ss_pred             hcCCCcCEEECcCCCCC
Q 007526          440 KDNSVITSLDLAYNPIG  456 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~  456 (600)
                      ..+++|++|+|++|++.
T Consensus       102 ~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTCTTCSEEECCSSCBC
T ss_pred             ccccCCCEEEeCCCCcc
Confidence            34456666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.11  E-value=1.8e-08  Score=103.59  Aligned_cols=272  Identities=14%  Similarity=0.136  Sum_probs=170.4

Q ss_pred             CCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHH
Q 007526          245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK  324 (600)
Q Consensus       245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  324 (600)
                      +..++.+.+-+. ++..+..+|    .+ .+|+.+++..+ ++.-+-    .++.. .+|+.+.+.. .++..+.    .
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF----~~-~~L~~i~l~~~-i~~I~~----~aF~~-~~L~~i~lp~-~l~~I~~----~  174 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAF----RN-SQIAKVVLNEG-LKSIGD----MAFFN-STVQEIVFPS-TLEQLKE----D  174 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTT----TT-CCCSEEECCTT-CCEECT----TTTTT-CCCCEEECCT-TCCEECS----S
T ss_pred             cCCccEEEECCc-cCEehHhhc----cc-CCccEEEeCCC-ccEECH----HhcCC-CCceEEEeCC-CccEehH----H
Confidence            466777777643 333322222    33 36999999876 432211    12333 5799999986 4544443    3


Q ss_pred             HhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHH
Q 007526          325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA  404 (600)
Q Consensus       325 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  404 (600)
                      +|..|++|+.+++..|+++..+...+     . ..+|+.+.+..+ +...+.    ..+.+|++|+.+++..+ +...+.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF-----~-~~~L~~l~lp~~-l~~I~~----~aF~~~~~L~~l~l~~~-l~~I~~  242 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTF-----V-YAGIEEVLLPVT-LKEIGS----QAFLKTSQLKTIEIPEN-VSTIGQ  242 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTT-----T-TCCCSEEECCTT-CCEECT----TTTTTCTTCCCEECCTT-CCEECT
T ss_pred             HhhCcccCCeeecCCCcceEechhhE-----e-ecccCEEEeCCc-hheehh----hHhhCCCCCCEEecCCC-ccCccc
Confidence            56789999999999998875432222     2 248999999865 554211    34678999999999875 333211


Q ss_pred             HHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH-HHHHHhhCCCccEEeccCcCC
Q 007526          405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQI  483 (600)
Q Consensus       405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~l~~n~i  483 (600)
                          .++.. .+|+.+.+.. .++..+.    .++..|++|+.+++.+|.+....... -..++..|++|+.+++.+ .+
T Consensus       243 ----~aF~~-~~L~~i~lp~-~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i  311 (401)
T 4fdw_A          243 ----EAFRE-SGITTVKLPN-GVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI  311 (401)
T ss_dssp             ----TTTTT-CCCSEEEEET-TCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred             ----ccccc-CCccEEEeCC-CccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence                23333 7899999954 4544322    45677899999999988654111000 113457789999999994 46


Q ss_pred             ChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEE
Q 007526          484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL  563 (600)
Q Consensus       484 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L  563 (600)
                      ...+..+    +..|++|+.++|..+ ++..+..+|..      ++|+++++.+|.+.......+    ..++. .++.|
T Consensus       312 ~~I~~~a----F~~c~~L~~l~lp~~-l~~I~~~aF~~------~~L~~l~l~~n~~~~l~~~~F----~~~~~-~l~~l  375 (401)
T 4fdw_A          312 RILGQGL----LGGNRKVTQLTIPAN-VTQINFSAFNN------TGIKEVKVEGTTPPQVFEKVW----YGFPD-DITVI  375 (401)
T ss_dssp             CEECTTT----TTTCCSCCEEEECTT-CCEECTTSSSS------SCCCEEEECCSSCCBCCCSSC----CCSCT-TCCEE
T ss_pred             EEEhhhh----hcCCCCccEEEECcc-ccEEcHHhCCC------CCCCEEEEcCCCCcccccccc----cCCCC-CccEE
Confidence            6655444    556799999999665 55544333322      479999999997764332222    11211 37888


Q ss_pred             EccCCCCch
Q 007526          564 NLANNFLTK  572 (600)
Q Consensus       564 ~l~~n~l~~  572 (600)
                      ++..+.+..
T Consensus       376 ~vp~~~~~~  384 (401)
T 4fdw_A          376 RVPAESVEK  384 (401)
T ss_dssp             EECGGGHHH
T ss_pred             EeCHHHHHH
Confidence            888875443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=6.4e-06  Score=78.74  Aligned_cols=18  Identities=22%  Similarity=0.318  Sum_probs=8.4

Q ss_pred             HhCCCCcEEEccCCCCCh
Q 007526          384 KNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~  401 (600)
                      ..+++|+.|+|++|.|.+
T Consensus       193 ~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          193 QKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             HHSTTCCEEECTTSCCCS
T ss_pred             hhCCCCCEEECCCCccCC
Confidence            344444444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.10  E-value=4.9e-07  Score=91.20  Aligned_cols=85  Identities=18%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             CcccEEECcC-CCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHH
Q 007526          359 GKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR  437 (600)
Q Consensus       359 ~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~  437 (600)
                      .+|+.|+|++ |.++..    .+..+..+++|++|+|++|.|+..    .+..+..+++|++|+|++|+|+....    .
T Consensus        31 ~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~----~   98 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALESLSW----K   98 (347)
T ss_dssp             SCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCSCCCS----T
T ss_pred             CCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCcccee----CHHHhcCCcCCCEEeCCCCccceeCH----H
Confidence            3566666664 666552    123345566666666666666552    22344555666666666666654211    1


Q ss_pred             HhhcCCCcCEEECcCCCCC
Q 007526          438 VLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       438 ~l~~~~~L~~L~Ls~n~i~  456 (600)
                      .+...+ |++|+|.+|.+.
T Consensus        99 ~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           99 TVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TTCSCC-CCEEECCSSCCC
T ss_pred             HcccCC-ceEEEeeCCCcc
Confidence            111112 666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.06  E-value=5e-07  Score=91.15  Aligned_cols=104  Identities=9%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             cEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccC-CCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          362 AVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       362 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ..++++++ .++.     +|. +..+++|++|+|++ |.|+..    ....+..+++|++|+|++|+|+...    +..+
T Consensus        11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~   76 (347)
T 2ifg_A           11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVA----PDAF   76 (347)
T ss_dssp             SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEEC----TTGG
T ss_pred             CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeC----HHHh
Confidence            45677777 7776     676 77778888888885 887763    2244666788888888888887642    2345


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCC
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG  484 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~  484 (600)
                      ..+++|++|+|++|+|+......    +... .|+.|++.+|.+.
T Consensus        77 ~~l~~L~~L~l~~N~l~~~~~~~----~~~~-~L~~l~l~~N~~~  116 (347)
T 2ifg_A           77 HFTPRLSRLNLSFNALESLSWKT----VQGL-SLQELVLSGNPLH  116 (347)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTT----TCSC-CCCEEECCSSCCC
T ss_pred             cCCcCCCEEeCCCCccceeCHHH----cccC-CceEEEeeCCCcc
Confidence            55688888888888776432111    1222 3777777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.06  E-value=4.2e-08  Score=100.81  Aligned_cols=270  Identities=12%  Similarity=0.141  Sum_probs=170.2

Q ss_pred             CCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHH
Q 007526          217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE  296 (600)
Q Consensus       217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  296 (600)
                      +..++.+.+.++ ++..+.    ..+.. .+|+.+.+..+ ++..+..+|    .+ .+|+.+.+.. .++.-+    ..
T Consensus       112 ~~~l~~i~ip~~-i~~I~~----~aF~~-~~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~-~l~~I~----~~  174 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPK----DAFRN-SQIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPS-TLEQLK----ED  174 (401)
T ss_dssp             CSSCSEEECCTT-CCEECT----TTTTT-CCCSEEECCTT-CCEECTTTT----TT-CCCCEEECCT-TCCEEC----SS
T ss_pred             cCCccEEEECCc-cCEehH----hhccc-CCccEEEeCCC-ccEECHHhc----CC-CCceEEEeCC-CccEeh----HH
Confidence            466788887653 332211    22223 57999999876 555433333    23 4699999986 343211    13


Q ss_pred             HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526          297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA  376 (600)
Q Consensus       297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  376 (600)
                      ++..|.+|+.+++.+|.++..+...    +. +.+|+.+.+..+ +...+.     .....+++|+.+++..+ ++..+.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~a----F~-~~~L~~l~lp~~-l~~I~~-----~aF~~~~~L~~l~l~~~-l~~I~~  242 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPAST----FV-YAGIEEVLLPVT-LKEIGS-----QAFLKTSQLKTIEIPEN-VSTIGQ  242 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTT----TT-TCCCSEEECCTT-CCEECT-----TTTTTCTTCCCEECCTT-CCEECT
T ss_pred             HhhCcccCCeeecCCCcceEechhh----Ee-ecccCEEEeCCc-hheehh-----hHhhCCCCCCEEecCCC-ccCccc
Confidence            4567999999999999887766533    33 579999999854 443221     11234558999999875 444221


Q ss_pred             HHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHH-HHHHHhhcCCCcCEEECcCCCC
Q 007526          377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-AIARVLKDNSVITSLDLAYNPI  455 (600)
Q Consensus       377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i  455 (600)
                          ..+.+ .+|+.+.+..+ +...+    ..++..|++|+.+++.+|.+...... .-..++..|++|+.++|.++ +
T Consensus       243 ----~aF~~-~~L~~i~lp~~-i~~I~----~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i  311 (401)
T 4fdw_A          243 ----EAFRE-SGITTVKLPNG-VTNIA----SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I  311 (401)
T ss_dssp             ----TTTTT-CCCSEEEEETT-CCEEC----TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred             ----ccccc-CCccEEEeCCC-ccEEC----hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence                12334 68999999544 43321    23577799999999998876410000 01245777899999999854 5


Q ss_pred             ChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEc
Q 007526          456 GADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL  535 (600)
Q Consensus       456 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~l  535 (600)
                      ...+.    .++..|.+|+.+.+..+ ++..+.    .++..| +|+.+++.+|.+.......+    ......++.|++
T Consensus       312 ~~I~~----~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~n~~~~l~~~~F----~~~~~~l~~l~v  377 (401)
T 4fdw_A          312 RILGQ----GLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEGTTPPQVFEKVW----YGFPDDITVIRV  377 (401)
T ss_dssp             CEECT----TTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECCSSCCBCCCSSC----CCSCTTCCEEEE
T ss_pred             EEEhh----hhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcCCCCcccccccc----cCCCCCccEEEe
Confidence            54433    23467899999999665 555443    345677 99999999997765332222    222246888988


Q ss_pred             cCCCC
Q 007526          536 AFNEI  540 (600)
Q Consensus       536 s~n~i  540 (600)
                      ..+.+
T Consensus       378 p~~~~  382 (401)
T 4fdw_A          378 PAESV  382 (401)
T ss_dssp             CGGGH
T ss_pred             CHHHH
Confidence            77653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.83  E-value=3.4e-05  Score=73.70  Aligned_cols=88  Identities=18%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh---HH
Q 007526          384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD---GA  460 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---~~  460 (600)
                      .++++|+.|+|++|.|++..  .++..+..+++|+.|+|++|.|++.  ..+.. +... +|++|+|++|++...   ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred             hhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcch
Confidence            46777888888888776520  1233344567777777777777664  11211 2222 677777777766531   11


Q ss_pred             HHHHHHHhhCCCccEEe
Q 007526          461 KALSEVLKFHGNINTLK  477 (600)
Q Consensus       461 ~~l~~~l~~~~~L~~L~  477 (600)
                      .+....+..+++|+.||
T Consensus       241 ~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHHCTTCCEES
T ss_pred             hHHHHHHHHCcccCeEC
Confidence            22334445556666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.68  E-value=2.8e-08  Score=102.33  Aligned_cols=219  Identities=14%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526          270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA  349 (600)
Q Consensus       270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  349 (600)
                      +..+++|+.+.+.++..+ -+    ..++..+.+|+.+.+..+ ++..+.    .++..+..|+.+.+..+...-..   
T Consensus       158 F~~c~~L~~i~l~~~~~~-I~----~~~F~~c~~L~~i~l~~~-~~~I~~----~~F~~~~~L~~i~~~~~~~~i~~---  224 (394)
T 4fs7_A          158 FATCESLEYVSLPDSMET-LH----NGLFSGCGKLKSIKLPRN-LKIIRD----YCFAECILLENMEFPNSLYYLGD---  224 (394)
T ss_dssp             TTTCTTCCEEECCTTCCE-EC----TTTTTTCTTCCBCCCCTT-CCEECT----TTTTTCTTCCBCCCCTTCCEECT---
T ss_pred             hcccCCCcEEecCCccce-ec----cccccCCCCceEEEcCCC-ceEeCc----hhhccccccceeecCCCceEeeh---
Confidence            344566676666544211 00    113344566666666544 222221    23445566666665544321100   


Q ss_pred             HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                         .. .....|+.+.+... ++..+    ...+..+..++.+.+..+...-.     ...+..+..++.+....+.+.+
T Consensus       225 ---~~-~~~~~l~~i~ip~~-~~~i~----~~~f~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~  290 (394)
T 4fs7_A          225 ---FA-LSKTGVKNIIIPDS-FTELG----KSVFYGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPE  290 (394)
T ss_dssp             ---TT-TTTCCCCEEEECTT-CCEEC----SSTTTTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECT
T ss_pred             ---hh-cccCCCceEEECCC-ceecc----cccccccccceeEEcCCCcceee-----ccccccccccceeccCceeecc
Confidence               00 11225666655443 11100    01234566666666655422110     1234445666666665544332


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCC
Q 007526          430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN  509 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n  509 (600)
                             ..+..|.+|+.+.+..+ +...+.    .++..|.+|+.+++..+ ++..+..    ++..|.+|+.+++..+
T Consensus       291 -------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          291 -------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS  353 (394)
T ss_dssp             -------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT
T ss_pred             -------ccccccccccccccccc-cceech----hhhcCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc
Confidence                   23445566777776544 222111    12345666777766543 3333332    2344566777766554


Q ss_pred             CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007526          510 GLRDEGAKCLAQSFKVVNEALTSIDLAFN  538 (600)
Q Consensus       510 ~i~~~~~~~l~~~l~~~n~~L~~L~ls~n  538 (600)
                       ++..+..+|..+     .+|+.+++..+
T Consensus       354 -l~~I~~~aF~~C-----~~L~~i~lp~~  376 (394)
T 4fs7_A          354 -LRKIGANAFQGC-----INLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTBTTC-----TTCCEEEEEGG
T ss_pred             -ccEehHHHhhCC-----CCCCEEEECCC
Confidence             444433334333     45666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.66  E-value=5.6e-08  Score=100.06  Aligned_cols=218  Identities=13%  Similarity=0.149  Sum_probs=118.3

Q ss_pred             HHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhH
Q 007526          297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA  376 (600)
Q Consensus       297 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  376 (600)
                      ++..|.+|+.+.+..+. ...+.    .++..+.+|+.+++..+ +...     ..........|+.+.+..+...-   
T Consensus       157 aF~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~-~~~I-----~~~~F~~~~~L~~i~~~~~~~~i---  222 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN-LKII-----RDYCFAECILLENMEFPNSLYYL---  222 (394)
T ss_dssp             TTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT-CCEE-----CTTTTTTCTTCCBCCCCTTCCEE---
T ss_pred             hhcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC-ceEe-----CchhhccccccceeecCCCceEe---
Confidence            34567788888876543 22221    34556777888777654 2211     11111233356666665543221   


Q ss_pred             HHHHHHHHhCCCCcEEEccCC--CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC
Q 007526          377 FHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP  454 (600)
Q Consensus       377 ~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  454 (600)
                         ......+.+|+.+.+...  .+.+       .++..+..|+.+.+..+...-     -...+..|..++.+.+..+.
T Consensus       223 ---~~~~~~~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~~~~~~~~i-----~~~~F~~~~~l~~~~~~~~~  287 (394)
T 4fs7_A          223 ---GDFALSKTGVKNIIIPDSFTELGK-------SVFYGCTDLESISIQNNKLRI-----GGSLFYNCSGLKKVIYGSVI  287 (394)
T ss_dssp             ---CTTTTTTCCCCEEEECTTCCEECS-------STTTTCSSCCEEEECCTTCEE-----CSCTTTTCTTCCEEEECSSE
T ss_pred             ---ehhhcccCCCceEEECCCceeccc-------ccccccccceeEEcCCCccee-----eccccccccccceeccCcee
Confidence               111234567777777543  2222       234456778888776653221     11234556777777776665


Q ss_pred             CChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE
Q 007526          455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID  534 (600)
Q Consensus       455 i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~  534 (600)
                      +.+.       .+..+.+|+.+.+..+ +...+..    ++..|.+|+.+++.++ ++..+..+|..+     .+|+.++
T Consensus       288 i~~~-------~F~~~~~L~~i~l~~~-i~~I~~~----aF~~c~~L~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~  349 (394)
T 4fs7_A          288 VPEK-------TFYGCSSLTEVKLLDS-VKFIGEE----AFESCTSLVSIDLPYL-VEEIGKRSFRGC-----TSLSNIN  349 (394)
T ss_dssp             ECTT-------TTTTCTTCCEEEECTT-CCEECTT----TTTTCTTCCEECCCTT-CCEECTTTTTTC-----TTCCEEC
T ss_pred             eccc-------cccccccccccccccc-cceechh----hhcCCCCCCEEEeCCc-ccEEhHHhccCC-----CCCCEEE
Confidence            4432       2356778888887654 3333322    3455688888888643 555444444443     5788888


Q ss_pred             ccCCCCChhHHHHHHHHHHhCcccceeEEEccCC
Q 007526          535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN  568 (600)
Q Consensus       535 ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n  568 (600)
                      +..+ ++..+..++    ..|..  |+.+++..+
T Consensus       350 lp~~-l~~I~~~aF----~~C~~--L~~i~lp~~  376 (394)
T 4fs7_A          350 FPLS-LRKIGANAF----QGCIN--LKKVELPKR  376 (394)
T ss_dssp             CCTT-CCEECTTTB----TTCTT--CCEEEEEGG
T ss_pred             ECcc-ccEehHHHh----hCCCC--CCEEEECCC
Confidence            8765 444333333    33333  778877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.11  E-value=1.5e-05  Score=81.73  Aligned_cols=315  Identities=10%  Similarity=0.169  Sum_probs=157.7

Q ss_pred             CccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCC---CCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG---ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .|+++.+..+ ++..+    ..++..|.+|+++.+..+.   ++..+-.+    +..|.+|+.+.+..+ ++..+.    
T Consensus        65 ~L~sI~iP~s-vt~Ig----~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a----F~~c~~L~~i~~~~~-~~~I~~----  130 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIG----SNAFYNCTSLKRVTIQDNKPSCVKKIGRQA----FMFCSELTDIPILDS-VTEIDS----  130 (394)
T ss_dssp             CCCEEEECTT-CCEEC----TTTTTTCTTCCEEEEGGGCCCCCCEECTTT----TTTCTTCCBCGGGTT-CSEECT----
T ss_pred             cCEEEEECCC-eeEEh----HHHhhCCccCceEeecCCCCCeeeEechhh----chhcccceeeccCCc-cceehh----
Confidence            4777777543 22221    2346677888888877652   44333322    345677777776543 221111    


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      ..+..+.+|+.+.+..+ +...+.    ..+..+..|+.+.+.++ ++.     +.........|+.+.+..+.. ..+.
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~----~~F~~c~~L~~i~~~~~-~~~-----I~~~aF~~~~l~~i~ip~~~~-~i~~  198 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVAD----GMFSYCYSLHTVTLPDS-VTA-----IEERAFTGTALTQIHIPAKVT-RIGT  198 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEECCTT-CCE-----ECTTTTTTCCCSEEEECTTCC-EECT
T ss_pred             hhhhhhcccccccccce-eeeecc----cceecccccccccccce-eeE-----eccccccccceeEEEECCccc-cccc
Confidence            23345677888887643 222111    22345577888877654 211     111112346777777755421 1111


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHh-------hh--cCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCc
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG-------LS--SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL  390 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------l~--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  390 (600)
                          .++..+..++.............-. +...       +.  .....+..+.+.+. +...+    ...+..|..|+
T Consensus       199 ----~af~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~----~~aF~~c~~L~  268 (394)
T 4gt6_A          199 ----NAFSECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNG-VARIE----THAFDSCAYLA  268 (394)
T ss_dssp             ----TTTTTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTT-EEEEC----TTTTTTCSSCC
T ss_pred             ----chhhhccccceecccccccccccce-eecccccccccccccccccccceEEcCCc-ceEcc----cceeeeccccc
Confidence                3345667777766554432210000 0000       00  00012333333321 11110    12356788899


Q ss_pred             EEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhC
Q 007526          391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH  470 (600)
Q Consensus       391 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~  470 (600)
                      .+.+..+...- +    ..++..+..|+.+.+.. .++..+.    .++..|.+|+.++|..+ ++..+.    .++..|
T Consensus       269 ~i~lp~~~~~I-~----~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C  333 (394)
T 4gt6_A          269 SVKMPDSVVSI-G----TGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQILD----DAFAGC  333 (394)
T ss_dssp             EEECCTTCCEE-C----TTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTC
T ss_pred             EEeccccccee-c----CcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEehH----hHhhCC
Confidence            99886653211 0    13466688899998864 3443322    34667899999999765 332222    244678


Q ss_pred             CCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       471 ~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                      .+|+.+.+..+ ++..+.    .++.+|++|+.+++.++...      + ..+. ...+|+.+.+..+.+.
T Consensus       334 ~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~------~-~~~~-~~~~L~~i~i~~~~~~  391 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ------W-NAIS-TDSGLQNLPVAPGSID  391 (394)
T ss_dssp             TTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH------H-HTCB-CCCCC-----------
T ss_pred             CCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee------h-hhhh-ccCCCCEEEeCCCCEE
Confidence            89999999654 444433    34567799999999886321      1 1121 1267888888776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.83  E-value=7.9e-05  Score=76.33  Aligned_cols=296  Identities=9%  Similarity=0.124  Sum_probs=146.9

Q ss_pred             HHhCCCccEEEcCCCC---CCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHH
Q 007526          158 AKELRAFSSVDMSGRN---FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG  234 (600)
Q Consensus       158 ~~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  234 (600)
                      +..+.+|+++.+..+.   +...+    ..++..|.+|+.+.+..+ ++..+.    .++..|.+|+.+.+..+. ...+
T Consensus        83 F~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~~----~aF~~c~~L~~i~lp~~~-~~I~  152 (394)
T 4gt6_A           83 FYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEIDS----EAFHHCEELDTVTIPEGV-TSVA  152 (394)
T ss_dssp             TTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEECT----TTTTTCTTCCEEECCTTC-CEEC
T ss_pred             hhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceehh----hhhhhhccccccccccee-eeec
Confidence            4468889999886542   33322    234566788888777654 222211    234567889999987532 1111


Q ss_pred             HHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCC
Q 007526          235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG  314 (600)
Q Consensus       235 ~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l  314 (600)
                          ...+..+..|+.+.+..+ ++..+..++     ....|+.+.+..+-.. .+    ..++..+..++.........
T Consensus       153 ----~~~F~~c~~L~~i~~~~~-~~~I~~~aF-----~~~~l~~i~ip~~~~~-i~----~~af~~c~~l~~~~~~~~~~  217 (394)
T 4gt6_A          153 ----DGMFSYCYSLHTVTLPDS-VTAIEERAF-----TGTALTQIHIPAKVTR-IG----TNAFSECFALSTITSDSESY  217 (394)
T ss_dssp             ----TTTTTTCTTCCEEECCTT-CCEECTTTT-----TTCCCSEEEECTTCCE-EC----TTTTTTCTTCCEEEECCSSS
T ss_pred             ----ccceecccccccccccce-eeEeccccc-----cccceeEEEECCcccc-cc----cchhhhccccceeccccccc
Confidence                123445788888888654 333222222     2356888887654221 11    12344566777766554332


Q ss_pred             ChHHHHHHH---------HHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHh
Q 007526          315 GALGANALA---------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN  385 (600)
Q Consensus       315 ~~~~~~~l~---------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  385 (600)
                      .......+.         ........+..+.+... +..     +..........|+.+.+.++... .+    ...+.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~-----i~~~aF~~c~~L~~i~lp~~~~~-I~----~~aF~~  286 (394)
T 4gt6_A          218 PAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR-----IETHAFDSCAYLASVKMPDSVVS-IG----TGAFMN  286 (394)
T ss_dssp             CBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE-----ECTTTTTTCSSCCEEECCTTCCE-EC----TTTTTT
T ss_pred             ccccceeecccccccccccccccccccceEEcCCc-ceE-----cccceeeecccccEEecccccce-ec----Cccccc
Confidence            111000000         00001122333333211 111     11111123346777777654221 10    123567


Q ss_pred             CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHH
Q 007526          386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE  465 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  465 (600)
                      ++.|+.+.+..+ +...+    ..++..|.+|+.+++..+ ++..+.    .++..|.+|+.+.|..+ ++..+.    .
T Consensus       287 c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~----~  351 (394)
T 4gt6_A          287 CPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILD----DAFAGCEQLERIAIPSS-VTKIPE----S  351 (394)
T ss_dssp             CTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEECTT-CCBCCG----G
T ss_pred             ccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEECcc-cCEEhH----h
Confidence            788888888543 32211    134666788888888654 333222    34667788888888654 332222    2


Q ss_pred             HHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526          466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL  511 (600)
Q Consensus       466 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  511 (600)
                      ++.+|.+|+.+++.++..       ....+..|..|+.+.+..+.+
T Consensus       352 aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          352 AFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGTTCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred             HhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence            446788888888887632       123456678888888876543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=90.13  E-value=0.032  Score=46.71  Aligned_cols=69  Identities=19%  Similarity=0.108  Sum_probs=41.8

Q ss_pred             cEEeccCcCCC--hhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hhHHHHHHH
Q 007526          474 NTLKLGWCQIG--ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQ  550 (600)
Q Consensus       474 ~~L~l~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~-~~~~~~l~~  550 (600)
                      ..++.+++.++  ..... +      -++|++|+|++|.|+......|...     ++|++|+|++|.+. +-....+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-l------p~~l~~L~Ls~N~l~~l~~~~f~~l-----~~L~~L~L~~NP~~CdC~l~~l~~   78 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-F------PVDTTELVLTGNNLTALPPGLLDAL-----PALRTAHLGANPWRCDCRLVPLRA   78 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-C------CTTCSEEECTTSCCSSCCTTTGGGC-----TTCCEEECCSSCCBCSGGGHHHHH
T ss_pred             CEEEeCCCCCccccCCCC-C------CcCCCEEECCCCcCCccChhhhhhc-----cccCEEEecCCCeeccCccHHHHH
Confidence            36777777776  43211 1      1468888888888876544434332     67888888888765 333444555


Q ss_pred             HHHh
Q 007526          551 ALKA  554 (600)
Q Consensus       551 ~~~~  554 (600)
                      ++..
T Consensus        79 wl~~   82 (130)
T 3rfe_A           79 WLAG   82 (130)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=84.02  E-value=0.28  Score=40.83  Aligned_cols=37  Identities=19%  Similarity=0.117  Sum_probs=18.1

Q ss_pred             CccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       472 ~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      +|++|+|++|+|+......|    ...++|++|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f----~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLL----DALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTG----GGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhh----hhccccCEEEecCCCee
Confidence            45555555555544433222    22355666666666443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.56  E-value=0.035  Score=56.02  Aligned_cols=15  Identities=13%  Similarity=0.164  Sum_probs=9.0

Q ss_pred             HhccCCCccEEEccc
Q 007526          185 SLGYNQTAEEVSFAA  199 (600)
Q Consensus       185 ~l~~~~~L~~L~Ls~  199 (600)
                      ++..|.+|++++|..
T Consensus        64 aF~~C~~L~~I~lp~   78 (379)
T 4h09_A           64 NFNSCYNMTKVTVAS   78 (379)
T ss_dssp             TTTTCTTCCEEEECT
T ss_pred             HhhCCCCCCEEEeCC
Confidence            355566666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	600
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-21
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-18
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-18
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-18
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-17
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-17
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-16
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-16
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-16
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-16
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-15
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-15
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-15
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-14
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-14
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-12
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-20
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-19
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-19
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-18
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-09
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	7e-14
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	3e-13
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	3e-13
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	6e-12
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	3e-09
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	5e-06
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	5e-12
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	6e-12
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	3e-09
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	1e-08
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	3e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (235), Expect = 2e-21
 Identities = 106/430 (24%), Positives = 171/430 (39%), Gaps = 11/430 (2%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
           S+D+      D     L   L   Q    V     G+T A  K     L+ N AL  LNL
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 226 SGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
             N +GD GV C+   L   +  +++L L +  L   G   ++  L+    L+ L L++N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 285 MIDYSGFTSLAEALLENSTIRSLHLNGNYGGA-LGANALAKGLEGNKSLRELHLHGNSIG 343
           ++  +G   L E LL+               +      LA  L      +EL +  N I 
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
           + G+R L  GL     +L  L + +  +++     +   + +  SL  + L  N +GD G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 404 AE-KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
                   L  +  + T+ +    I +KG   + RVL+    +  L LA N +G +GA+ 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 463 LSEVLKFHGNINTL-KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
           L E L   G       +  C   A+     + +L  N  +  L +  N L D G + L Q
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFF 581
                   L  + LA  ++ D    ++A  L AN   ++  L+L+NN L   G  I    
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG--ILQLV 418

Query: 582 SFLLHQIKSL 591
             +      L
Sbjct: 419 ESVRQPGCLL 428

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (211), Expect = 2e-18
 Identities = 68/428 (15%), Positives = 143/428 (33%), Gaps = 7/428 (1%)

Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKA 209
           S     E    L+    V +      +     ++ +L  N    E++  +N +   G+  
Sbjct: 15  SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 74

Query: 210 FDGVLQS-NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
               LQ+ +  ++ L+L    +   G   L   L     ++ L LS   L D G + + E
Sbjct: 75  VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 134

Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
            L +                +       ++L            N         +      
Sbjct: 135 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 194

Query: 329 NKSLRELHLHGNSIGDEGIRAL-MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
           +   +   L   S G        + G+ + K  L  L +G+N +   G   +   + +  
Sbjct: 195 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 254

Query: 388 SLLWINLYMNDIGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVI 445
           S L                     L+   ++  + L GN +  +GA  +   L +    +
Sbjct: 255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 314

Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA-EFVADMLRYNNTISIL 504
            SL +      A      S VL  +  +  L++   ++  +G  E    + +  + + +L
Sbjct: 315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 374

Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
            L    + D     LA +    N +L  +DL+ N + D G   + ++++      +  L 
Sbjct: 375 WLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQP-GCLLEQLV 432

Query: 565 LANNFLTK 572
           L + + ++
Sbjct: 433 LYDIYWSE 440

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (207), Expect = 6e-18
 Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 2/139 (1%)

Query: 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNN 426
           + S +A    H +  +   + LL + +  N + D G  ++   L Q  + +  + L   +
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380

Query: 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQIGA 485
           +     S++A  L  N  +  LDL+ N +G  G   L E ++     +  L L       
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440

Query: 486 SGAEFVADMLRYNNTISIL 504
              + +  + +   ++ ++
Sbjct: 441 EMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (206), Expect = 7e-18
 Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 1/142 (0%)

Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
            +      A   +  +  L  N+ L EL +  N + D G+R L  GL      L VL + 
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377

Query: 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNN 426
           +  +S      +A  +    SL  ++L  N +GD G  ++ ++++Q    +  + L    
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437

Query: 427 IHSKGASAIARVLKDNSVITSL 448
              +    +  + KD   +  +
Sbjct: 438 WSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (203), Expect = 2e-17
 Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
            ++ L +    + D     L+  L        V+ + +  ++      ++  ++   +L 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQ----CQVVRLDDCGLTEARCKDISSALRVNPALA 58

Query: 391 WINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIH 428
            +NL  N++GD G   +   L+     I  + L    + 
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (197), Expect = 9e-17
 Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)

Query: 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
           ++ +++L++    + D     L  +L      + ++L    L +   K I+  L+ N  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

Query: 277 RVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNY 313
             L L +N +   G   + + L   S  I+ L L    
Sbjct: 58  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (195), Expect = 2e-16
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 282 NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340
           +NN ++ +G   L + L +  S +R L L          ++LA  L  N SLREL L  N
Sbjct: 348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407

Query: 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
            +GD GI  L+  +      L  L + +   S +    +    K+  SL
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (193), Expect = 3e-16
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
           +  LDI    +S      +   ++ C+ +    L    + +   + I+ AL+ N  +  +
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 421 DLGGNNIHSKGASAIARVLKDNSV-ITSLDL 450
           +L  N +   G   + + L+  S  I  L L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (192), Expect = 4e-16
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
             G+ Q    L+ L L+   + D     L   L+ N  +  L LS+  L D G   + E 
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 270 LKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
           ++    +L  L L +          L     +  ++R +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (190), Expect = 6e-16
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERL 251
             +  A   ++ +   +    L +N +L+ L+LS N +GD G+  L + +      +E+L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVL 279
            L  +   +E    +  L K+   LRV+
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (187), Expect = 2e-15
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
           I SLD+    +       L  +L+       ++L  C +  +  + ++  LR N  ++ L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
           +LR+N L D G  C+ Q  +  +  +  + L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (185), Expect = 3e-15
 Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 3/139 (2%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           ++ L++    +  + +  L   L      + + L+           ++  L  N +L EL
Sbjct: 4   IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
           +L  N +GD G+  ++ GL +   K+  L + N  ++  G   ++  ++   +L  ++L 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 396 MNDIGDEGAEKIADALKQN 414
            N +GD G + + + L   
Sbjct: 121 DNLLGDAGLQLLCEGLLDP 139

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (181), Expect = 8e-15
 Identities = 21/96 (21%), Positives = 35/96 (36%)

Query: 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVV 526
            +    +  L L  C +  S    +A  L  N+++  LDL  N L D G   L +S +  
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 527 NEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTS 562
              L  + L      ++    +    K    + V S
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (180), Expect = 1e-14
 Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 260 DEGAKAIAEL-LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318
           D G + + +   +  S+LRVL L +  +  S  +SLA  LL N ++R L L+ N  G  G
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 319 ANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
              L + +      L +L L+     +E    L + L   K  L V+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA-LEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (177), Expect = 3e-14
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
           ++ L +   +L D     +  LL+     +V+ L++  +  +    ++ AL  N  +  L
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 308 HLNGNYGGALGANALAKGLEGNK-SLRELHLHGN 340
           +L  N  G +G + + +GL+     +++L L   
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (161), Expect = 2e-12
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 4/97 (4%)

Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
           + +      ++ A       +LQ     + + L    + +   K +   L  N  +  L 
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 253 LSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDY 288
           L S +L D G   + + L+  S  ++ L L N  +  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (155), Expect = 1e-11
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531
           +I +L +   ++  +     A++L       ++ L   GL +   K ++ + +V N AL 
Sbjct: 3   DIQSLDIQCEELSDAR---WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALA 58

Query: 532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 569
            ++L  NE+ D G   + Q L+      +  L+L N  
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTP-SCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLN 224
            + ++  +  D     LA +L  N +  E+  + N +  AGI      ++     L+ L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 225 LSGNPIGDEGVKCLCDILVDN 245
           L      +E    L  +  D 
Sbjct: 433 LYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 8e-04
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGI 207
            S  +L        +   +D+S    GD G+  L ES+       E++       +    
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

Query: 208 KAFDGVLQSNIALKTL 223
                + +   +L+ +
Sbjct: 444 DRLQALEKDKPSLRVI 459

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 91.1 bits (224), Expect = 2e-20
 Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 17/325 (5%)

Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
           +    L  + I      S+   LLE+ +++ + L+GN  G   A  L++ +   K L   
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 336 HLHGNSIG--DEGIRALMSGLSSRKGKLAVLDI---GNNSISAKGAFHVAEYIKNCKSLL 390
                  G   + I   +  L     K   L      +N+        + +++     L 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 391 WINLYMNDIGDEGAE---------KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
            + L+ N +G +             +    K    + +I  G N + +      A+  + 
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 442 NSVITSLDLAYNPIGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
           + ++ ++ +  N I  +G + L    L +   +  L L        G+  +A  L+    
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 501 ISILDLRANGLRDEGAKCLAQSF-KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559
           +  L L    L   GA  +  +F K+ N  L ++ L +NEI  D    +   +       
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-D 303

Query: 560 VTSLNLANNFLTKFGQVISLFFSFL 584
           +  L L  N  ++   V+       
Sbjct: 304 LLFLELNGNRFSEEDDVVDEIREVF 328

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 87.2 bits (214), Expect = 3e-19
 Identities = 65/317 (20%), Positives = 124/317 (39%), Gaps = 18/317 (5%)

Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
           ++  +L  + I  E  K +  +L+++  V+ + LS   +  E A+ ++E + +   L + 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 280 ELNNNMID------YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
           E ++                L +ALL+   + ++ L+ N  G      L   L  +  L 
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 334 ELHLHGNSIGDEGIRALMSGLS--------SRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
            L+LH N +G +    +   L              L  +  G N +        A+  ++
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 386 CKSLLWINLYMNDIGDEGAE-KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
            + L  + +  N I  EG E  + + L   + +  +DL  N     G+SA+A  LK    
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNIN--TLKLGWCQIGASGAEFVADMLRYNNT-I 501
           +  L L    + A GA A+ +      NI   TL+L + +I       +  ++      +
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 502 SILDLRANGLRDEGAKC 518
             L+L  N   +E    
Sbjct: 305 LFLELNGNRFSEEDDVV 321

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 86.1 bits (211), Expect = 7e-19
 Identities = 61/327 (18%), Positives = 115/327 (35%), Gaps = 50/327 (15%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS---V 256
           + IT    K+   VL  + ++K + LSGN IG E  + L + +     +E  + S     
Sbjct: 13  DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 257 DLRDEGAKAIAELLKNNSILRVLELNNN-------------------------------- 284
            ++DE  +A+  LL+       L                                     
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132

Query: 285 --------MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
                   +       ++ +       +RS+    N          AK  + ++ L  + 
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192

Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396
           +  N I  EGI  L+    +   +L VLD+ +N+ +  G+  +A  +K+  +L  + L  
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252

Query: 397 NDIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYN 453
             +   GA  + DA    +N  + T+ L  N I       +  V+ +    +  L+L  N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 454 PIGADGA--KALSEVLK--FHGNINTL 476
               +      + EV      G ++ L
Sbjct: 313 RFSEEDDVVDEIREVFSTRGRGELDEL 339

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 84.2 bits (206), Expect = 3e-18
 Identities = 61/312 (19%), Positives = 107/312 (34%), Gaps = 17/312 (5%)

Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
             L    +  E  K++  +L  +  ++ + L+ N I       L+E +     +     +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67

Query: 311 GNYGGALGANA------LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
             + G +          L + L     L  + L  N+ G      L+  LS       + 
Sbjct: 68  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

Query: 365 DIGNNSISAKGA--------FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT 416
              N      GA          V +  KN   L  I    N + +   ++ A   + +R 
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 417 ITTIDLGGNNIHSKGASAIAR-VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475
           + T+ +  N I  +G   +    L     +  LDL  N     G+ AL+  LK   N+  
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247

Query: 476 LKLGWCQIGASGAEFVADMLRY--NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
           L L  C + A GA  V D      N  +  L L+ N +  +  + L          L  +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 534 DLAFNEIRDDGA 545
           +L  N   ++  
Sbjct: 308 ELNGNRFSEEDD 319

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 13/68 (19%), Positives = 30/68 (44%)

Query: 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475
           +I    L  + I ++   ++  VL ++  +  + L+ N IG + A+ LSE +    ++  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 476 LKLGWCQI 483
            +      
Sbjct: 64  AEFSDIFT 71

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.7 bits (164), Expect = 7e-14
 Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 6/143 (4%)

Query: 384 KNCKSLLWINL-YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
           ++   L  +N+  M  +  E    + +A   ++ I    L    I    A  +  +++ +
Sbjct: 12  EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS 71

Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNN 499
             +  L++  N +  +    L        +I   K        +G      +   +  N 
Sbjct: 72  PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE 131

Query: 500 TISILDLRAN--GLRDEGAKCLA 520
           ++  + +       R   ++ L 
Sbjct: 132 SLLRVGISFASMEARHRVSEALE 154

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.1 bits (160), Expect = 3e-13
 Identities = 18/156 (11%), Positives = 53/156 (33%), Gaps = 5/156 (3%)

Query: 405 EKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
             I    + +  +  +++     +  +   ++     ++  I    LA   I    A+ L
Sbjct: 5   SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64

Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523
            E+++   ++  L +    +       +        +I             G +      
Sbjct: 65  IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124

Query: 524 KVV--NEALTSIDLAFNEIRDDGAFAIAQALKANED 557
             +  NE+L  + ++F  +  +    +++AL+ N +
Sbjct: 125 MAIEENESLLRVGISFASM--EARHRVSEALERNYE 158

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 264 KAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322
             I  L ++++ L+ + +NN   +      SL EA   +  I    L         A  L
Sbjct: 5   SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64

Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI---GNNSISAKGAFHV 379
            + +E + SLR L++  N +  E +  L+      +  +          + +  +    +
Sbjct: 65  IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGNQVEMDM 123

Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
              I+  +SLL + +    +      ++++AL++N   
Sbjct: 124 MMAIEENESLLRVGISFASME--ARHRVSEALERNYER 159

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.9 bits (149), Expect = 6e-12
 Identities = 17/154 (11%), Positives = 62/154 (40%), Gaps = 7/154 (4%)

Query: 293 SLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
            +     +++ ++ +++N           +L +    +K + +  L   +I D   R L+
Sbjct: 6   CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 65

Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIGDEGAEKIA 408
             + +      VL++ +N ++ +    +       +S++           +G++    + 
Sbjct: 66  ELIETSPSL-RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124

Query: 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
            A+++N ++  + +   ++  +    ++  L+ N
Sbjct: 125 MAIEENESLLRVGISFASM--EARHRVSEALERN 156

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.2 bits (129), Expect = 3e-09
 Identities = 18/139 (12%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
             ++   I++      ++  ++  +L+   I D   + L +++  +  +  L + S  L 
Sbjct: 26  KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85

Query: 260 DEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
            E    +         +   + +N    ++       +  A+ EN ++  + ++     A
Sbjct: 86  PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 145

Query: 317 --LGANALAKGLEGNKSLR 333
               + AL +  E  +  R
Sbjct: 146 RHRVSEALERNYERVRLRR 164

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 33/164 (20%)

Query: 151 KQTLNEFAKELRAFSSVDMSG-RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAG--- 206
           +  +N   ++      V+++  +    E +  L E+   ++  E+ S A   I+ +    
Sbjct: 4   ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 63

Query: 207 -------------------------IKAFDGVLQSNIALKTLNLS---GNPIGDEGVKCL 238
                                    +           ++          + +G++    +
Sbjct: 64  LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123

Query: 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
              + +N  + R+ +S   +      + A L +N   +R+  L 
Sbjct: 124 MMAIEENESLLRVGISFASMEARHRVSEA-LERNYERVRLRRLG 166

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.4 bits (150), Expect = 5e-12
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 384 KNCKSLLWINLY-MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
            N   L  +NL  + +I     +  A+ALK N  +    + G   +   A A+A +LK N
Sbjct: 14  NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 73

Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK--LGWCQIGASGAEFVADMLRYNNT 500
           + + SL++  N I   G  AL E L+ + ++  L+       +G +    +A+ML  N T
Sbjct: 74  NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 133

Query: 501 ISILDL--RANGLRDEGAKCLA 520
           +          G R   +  + 
Sbjct: 134 LLKFGYHFTQQGPRLRASNAMM 155

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 6e-12
 Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 4/152 (2%)

Query: 293 SLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
           +L      +  +  ++LN           A A+ L+ N  +++  + G    D    AL 
Sbjct: 8   TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 67

Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS-LLWINLYMNDIGDEGAEKIADA 410
             L       ++    N    +     V     N     L I+     +G+    +IA+ 
Sbjct: 68  EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 127

Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
           L++N T+                  +  + +N
Sbjct: 128 LEKNTTLLKFGYHFTQQ--GPRLRASNAMMNN 157

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 4/138 (2%)

Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
             I    +KA    L++N  +K  ++ G    D     L ++L  N  ++ L + S  + 
Sbjct: 28  MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87

Query: 260 DEGAKAIAELLKNNSILRVLELNNN--MIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317
             G  A+ E L++N+ L  L ++N    +  +    +A  L +N+T+     +    G  
Sbjct: 88  GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP- 146

Query: 318 GANALAKGLEGNKSLREL 335
                +  +  N  L   
Sbjct: 147 -RLRASNAMMNNNDLVRK 163

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 30/183 (16%)

Query: 236 KCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
           + L  I  ++  +E + L+++ ++     KA AE LK N+ ++   +     +     +L
Sbjct: 7   ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 66

Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
           AE L  N+T++SL++  N+    G  AL + L+ N SL EL +   S             
Sbjct: 67  AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS------------- 113

Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
                           +       +A  ++   +LL    +    G     + ++A+  N
Sbjct: 114 --------------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL--RASNAMMNN 157

Query: 415 RTI 417
             +
Sbjct: 158 NDL 160

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 2/138 (1%)

Query: 433 SAIARVLKDNSVITSLDLA-YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491
             + R+  ++  +  ++L     I     KA +E LK +  +    +   +     A  +
Sbjct: 7   ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 66

Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV-VNEALTSIDLAFNEIRDDGAFAIAQ 550
           A+ML+ NNT+  L++ +N +   G   L ++ +   +     ID     + ++    IA 
Sbjct: 67  AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 126

Query: 551 ALKANEDVAVTSLNLANN 568
            L+ N  +     +    
Sbjct: 127 MLEKNTTLLKFGYHFTQQ 144

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 36/289 (12%), Positives = 79/289 (27%), Gaps = 37/289 (12%)

Query: 286 IDYSGFTSLAEAL--LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
           +D +G     +    L +  + +     ++     A   +        ++ + L  + I 
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-----PFRVQHMDLSNSVIE 59

Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
              +  ++S  S    KL  L +    +S          +    +L+ +NL       E 
Sbjct: 60  VSTLHGILSQCS----KLQNLSLEGLRLSDPI----VNTLAKNSNLVRLNLSGCSGFSEF 111

Query: 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
           A +   +         +    +        A+A V +  + +       N          
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------- 164

Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL-RANGLRDEGAKCLAQS 522
           S++         L                      N +  L L R   +  E    L + 
Sbjct: 165 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE- 223

Query: 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571
                  L ++ + F  + D     + +AL          L +  +  T
Sbjct: 224 ----IPTLKTLQV-FGIVPDGTLQLLKEALP--------HLQINCSHFT 259

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 53/323 (16%), Positives = 98/323 (30%), Gaps = 47/323 (14%)

Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLN 310
            L  V   D G + + + L  +    +L+L NN I     T + +   +N   + +L L 
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKI-----TEIKDGDFKNLKNLHTLILI 63

Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
            N    +   A A        L  L+L  N +     + L   +     +L V +     
Sbjct: 64  NNKISKISPGAFA----PLVKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEITK 114

Query: 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430
           +       V   +     +      +   G         A +  + ++ I +   NI + 
Sbjct: 115 VR----KSVFNGLNQMIVVELGTNPLKSSGI-----ENGAFQGMKKLSYIRIADTNITTI 165

Query: 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490
                         +T L L  N I    A +        G  N  KLG      S  + 
Sbjct: 166 PQGLPPS-------LTELHLDGNKITKVDAAS------LKGLNNLAKLGLSFNSISAVDN 212

Query: 491 VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 550
               L     +  L L  N L               ++ +  + L  N I   G+     
Sbjct: 213 --GSLANTPHLRELHLNNNKLVKVPGGLAD------HKYIQVVYLHNNNISAIGSNDFCP 264

Query: 551 ALKANEDVAVTSLNLANNFLTKF 573
                +  + + ++L +N +  +
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYW 287

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.004
 Identities = 42/184 (22%), Positives = 61/184 (33%), Gaps = 30/184 (16%)

Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNN----MIDYSGFTSLAEALLENSTIR-- 305
            L  + L     K I  L  + + L  L+L NN    +   SG T L E  L  + I   
Sbjct: 220 NLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 278

Query: 306 ----SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
                L    N             +   K+L  L L+ N+I    I  + S L+     L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPV-SSLTK----L 331

Query: 362 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
             L   NN +S          + N  ++ W++   N I D         L     IT + 
Sbjct: 332 QRLFFANNKVSD------VSSLANLTNINWLSAGHNQISDL------TPLANLTRITQLG 379

Query: 422 LGGN 425
           L   
Sbjct: 380 LNDQ 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	600
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.78
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.52
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.52
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.25
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.16
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.14
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.1
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.76
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.14

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-38  Score=328.61  Aligned_cols=437  Identities=18%  Similarity=0.250  Sum_probs=298.5

Q ss_pred             HHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhc-CCCccEEEccCC
Q 007526          150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGN  228 (600)
Q Consensus       150 ~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n  228 (600)
                      +..++.+++..+++++.|+|++|.+++.++..++..+..+++|++|+|++|.|++.++..++..+.. ..+|++|+|++|
T Consensus        15 ~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n   94 (460)
T d1z7xw1          15 SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC   94 (460)
T ss_dssp             CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred             ChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC
Confidence            3344444555555566666666666666665566655556666666666666655555555554432 234666666666


Q ss_pred             CCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcC-CCccEEeecCCCCChhhHHHHHHHHhhCCCccEE
Q 007526          229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSL  307 (600)
Q Consensus       229 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  307 (600)
                      ++++.+...++..+..+++|++|++++|.+++.+...+...+... ............+...+...+...+.....++.+
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  174 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL  174 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred             Cccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccc
Confidence            666555555555555556666666666666555555554444322 2233444444455555555555566667777777


Q ss_pred             EccCCCCChHHHHHHHHHhhcCC-CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH-HHHHh
Q 007526          308 HLNGNYGGALGANALAKGLEGNK-SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKN  385 (600)
Q Consensus       308 ~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~  385 (600)
                      +++++.....+...+...+...+ ....+++..+.+...+.......+... +.++.+++++|.+.+.+..... .....
T Consensus       175 ~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~~~n~~~~~~~~~~~~~~~~~  253 (460)
T d1z7xw1         175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLLHP  253 (460)
T ss_dssp             ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhccccccccc-ccccccchhhccccccccchhhcccccc
Confidence            77777776666655555554433 466777777777666666555555433 3678888888877665543333 33344


Q ss_pred             CCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhc-CCCcCEEECcCCCCChhHHHHHH
Q 007526          386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIGADGAKALS  464 (600)
Q Consensus       386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~  464 (600)
                      ...++.+++++|.+.......+...+..++.++.+++++|.+++.+...+...+.. ...|+.+++++|.+++.+...+.
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            66788888888888888777777777778888888888888888888887776654 36788888888888888888888


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHh-hCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChh
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLR-YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD  543 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~  543 (600)
                      ..+..+++|++|++++|.|++.+...+++.+. .++.|++|+|++|.|++.++..+.+.+.. +++|++|||++|+|++.
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~  412 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDA  412 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc-CCCCCEEECCCCcCCHH
Confidence            88888888888888888888888888877775 46778888888888888888888877764 37888888888888888


Q ss_pred             HHHHHHHHHHhCcccceeEEEccCCCCchhHHHHHHHHHHHHHHhh
Q 007526          544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQVISLFFSFLLHQIK  589 (600)
Q Consensus       544 ~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~l~  589 (600)
                      ++..+.+.++.+.. .|+.|++.+|.+.+.....+..+.+..+.++
T Consensus       413 g~~~l~~~l~~~~~-~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~  457 (460)
T d1z7xw1         413 GILQLVESVRQPGC-LLEQLVLYDIYWSEEMEDRLQALEKDKPSLR  457 (460)
T ss_dssp             HHHHHHHHHTSTTC-CCCEEECTTCCCCHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHHhCCC-ccCEEECCCCCCCHHHHHHHHHHHHhCCCCE
Confidence            88888887765443 4888888888888888777777666555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-37  Score=320.98  Aligned_cols=419  Identities=23%  Similarity=0.320  Sum_probs=372.4

Q ss_pred             cccccHhHHHHHHHHHHhCCCccEEEcCCCCCCHHHHHHHHHHhcc-CCCccEEEcccCCCCHHHHHHHHHHHhcCCCcc
Q 007526          143 TGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGY-NQTAEEVSFAANGITAAGIKAFDGVLQSNIALK  221 (600)
Q Consensus       143 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~  221 (600)
                      ...+...+.+.+...++.+++|++|||++|.|++.++..+++.+.. ..+|++|+|++|.+++.+...++..+..+++|+
T Consensus        36 ~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~  115 (460)
T d1z7xw1          36 DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ  115 (460)
T ss_dssp             SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccc
Confidence            3456777888889999999999999999999999999999988875 458999999999999999999999999999999


Q ss_pred             EEEccCCCCChHHHHHHHHHHhh-CCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhh
Q 007526          222 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE  300 (600)
Q Consensus       222 ~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  300 (600)
                      +|++++|.+++.+...+...+.. ......+......+...+...+...+.....++.++++++.+.+.++..+...+..
T Consensus       116 ~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~  195 (460)
T d1z7xw1         116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD  195 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998888887765 44567777777778877788888888888999999999999988888888777765


Q ss_pred             -CCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH
Q 007526          301 -NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV  379 (600)
Q Consensus       301 -~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  379 (600)
                       ......+++..+.+...+...+...+..++.++.+++++|.+.+.++.............++.+++++|.+.......+
T Consensus       196 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~  275 (460)
T d1z7xw1         196 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  275 (460)
T ss_dssp             SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             ccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccc
Confidence             4578899999999888888888888888999999999999998877776666666666789999999999999888888


Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChh
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD  458 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  458 (600)
                      ...+...+.++.+++++|.+++.+...+...+.. ...|+.+++++|.++..+...++.++..+++|++|+|++|+|+++
T Consensus       276 ~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~  355 (460)
T d1z7xw1         276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  355 (460)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             cccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence            8889999999999999999999999999887765 568999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007526          459 GAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF  537 (600)
Q Consensus       459 ~~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~  537 (600)
                      ++..+++.+. .++.|++|++++|.|++.+..+++..+..+++|++|+|++|.|++.|+..+.+.++...+.|+.|++.+
T Consensus       356 g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~  435 (460)
T d1z7xw1         356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  435 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence            9999988876 477899999999999999999999999999999999999999999999999998876556799999999


Q ss_pred             CCCChhHHHHHHHHHHhCcccceeEE
Q 007526          538 NEIRDDGAFAIAQALKANEDVAVTSL  563 (600)
Q Consensus       538 n~i~~~~~~~l~~~~~~~~~~~L~~L  563 (600)
                      |.+.++....+....+.++.  |+.|
T Consensus       436 ~~~~~~~~~~l~~l~~~~~~--l~~~  459 (460)
T d1z7xw1         436 IYWSEEMEDRLQALEKDKPS--LRVI  459 (460)
T ss_dssp             CCCCHHHHHHHHHHHHHCTT--SEEE
T ss_pred             CCCCHHHHHHHHHHHHhCCC--CEEe
Confidence            99999999999998888876  5544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=1.5e-28  Score=248.03  Aligned_cols=293  Identities=23%  Similarity=0.282  Sum_probs=165.5

Q ss_pred             CCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCC------hhhHHHHHHHHhhCC
Q 007526          229 PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID------YSGFTSLAEALLENS  302 (600)
Q Consensus       229 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~l~~~~  302 (600)
                      .++.++...+...+..+..|++|+|++|.+++.++..++..+..+++|+.|+++++...      ..++..+.+.+..++
T Consensus        14 ~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~   93 (344)
T d2ca6a1          14 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   93 (344)
T ss_dssp             SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             CCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCC
Confidence            44555555555556666666666666666666666666666666666666666554332      223344444455555


Q ss_pred             CccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHH
Q 007526          303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY  382 (600)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  382 (600)
                      +|++|++++|.++..+...+...+..+++|++|++++|.+++.+...++..+...                    .....
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~--------------------~~~~~  153 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------------------AVNKK  153 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--------------------HHHHH
T ss_pred             Ccccccccccccccccccchhhhhcccccchheeccccccccccccccccccccc--------------------ccccc
Confidence            5555555555555555555555555555555555555555544444433322100                    01111


Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHH-HHHHhhcCCCcCEEECcCCCCChhHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA-IARVLKDNSVITSLDLAYNPIGADGAK  461 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~i~~~~~~  461 (600)
                      ....+.|+.+++++|.+++.++..+...+..++.|++|++++|.|++.+... +...+..+++|++|+|++|.+++.+..
T Consensus       154 ~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         154 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             cccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence            2345566666666666666666666666666666666666666666655433 344455556666666666666666666


Q ss_pred             HHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhh--CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY--NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       462 ~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      .+...+..+++|++|++++|.|++.+...+++.+..  ++.|++|++++|.|++.+...+...+....+.|++|+|++|+
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            666666666666666666666666666666666553  345666666666666666666666554223456666666666


Q ss_pred             CC
Q 007526          540 IR  541 (600)
Q Consensus       540 i~  541 (600)
                      +.
T Consensus       314 ~~  315 (344)
T d2ca6a1         314 FS  315 (344)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.96  E-value=4e-28  Score=244.80  Aligned_cols=305  Identities=21%  Similarity=0.282  Sum_probs=255.8

Q ss_pred             cCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCC------hHHHHHHHHHHhc
Q 007526          199 ANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKN  272 (600)
Q Consensus       199 ~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~  272 (600)
                      -+.++.++...+...+..+..|++|+|++|.+++.+...++..+..+++|+.|+++++...      ..+...+...+..
T Consensus        12 l~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~   91 (344)
T d2ca6a1          12 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK   91 (344)
T ss_dssp             ESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhh
Confidence            3568888899999999999999999999999999999999999999999999999987543      3456677888888


Q ss_pred             CCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHH
Q 007526          273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS  352 (600)
Q Consensus       273 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~  352 (600)
                      +++|++|+|++|.+++.++..+...+..+++|++|++++|.++..+...++.++..+.                .    .
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~----------------~----~  151 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA----------------V----N  151 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHH----------------H----H
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccc----------------c----c
Confidence            9999999999999999999999999999999999999999998888777766543210                0    0


Q ss_pred             hhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHH-HHHHhhcCCCccEEEccCCCCChHH
Q 007526          353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK-IADALKQNRTITTIDLGGNNIHSKG  431 (600)
Q Consensus       353 ~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~L~~L~L~~n~l~~~~  431 (600)
                      ......+.|+.+++++|.+++.+...+...+..++.|++|++++|.++++|... +...+..+++|++|++++|.+++.+
T Consensus       152 ~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  231 (344)
T d2ca6a1         152 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG  231 (344)
T ss_dssp             HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH
T ss_pred             cccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc
Confidence            111233478888888888888888888888888999999999999999887654 4556777889999999999999988


Q ss_pred             HHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh--CCCccEEeccCcCCChhHHHHHHHHHh-hCCCccEEEccC
Q 007526          432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADMLR-YNNTISILDLRA  508 (600)
Q Consensus       432 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~  508 (600)
                      ...++..+..+++|++|+|++|.|++.+...++..+..  ++.|++|++++|.|++.+...+...+. ++++|+.|++++
T Consensus       232 ~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         232 SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             cccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            88999999999999999999999999999999888875  467999999999999999888888886 678999999999


Q ss_pred             CCCChH--HHHHHHHHH
Q 007526          509 NGLRDE--GAKCLAQSF  523 (600)
Q Consensus       509 n~i~~~--~~~~l~~~l  523 (600)
                      |.+.++  ....+...+
T Consensus       312 N~~~~~~~~~~~l~~~~  328 (344)
T d2ca6a1         312 NRFSEEDDVVDEIREVF  328 (344)
T ss_dssp             SBSCTTSHHHHHHHHHH
T ss_pred             CcCCCcchHHHHHHHHH
Confidence            988654  455455544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=4.3e-22  Score=203.23  Aligned_cols=327  Identities=21%  Similarity=0.239  Sum_probs=228.8

Q ss_pred             hCCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH
Q 007526          160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .+.++++|+++++.|++.      +.+.++++|++|+|++|.|++..      .+.++++|++|++++|++.+.      
T Consensus        42 ~l~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~l~~l~------~l~~L~~L~~L~L~~n~i~~i------  103 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADI------  103 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCC------
T ss_pred             HhCCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCcCCCCc------cccCCcccccccccccccccc------
Confidence            457799999999998762      34677899999999999987532      267789999999999998764      


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHH---------------HHHHhhCCCc
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL---------------AEALLENSTI  304 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l---------------~~~l~~~~~L  304 (600)
                      ..+..+++|+.|+++++.+++...      ......+..+....+.+........               ...+......
T Consensus       104 ~~l~~l~~L~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (384)
T d2omza2         104 TPLANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL  177 (384)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred             cccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence            235678999999999998876422      1122445555555544321110000               0011122333


Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHH
Q 007526          305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK  384 (600)
Q Consensus       305 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  384 (600)
                      .......+.....      .....+++++.+++++|.+++...      . ...++|+.|++++|.+++.      ..+.
T Consensus       178 ~~~~~~~~~~~~~------~~~~~l~~~~~l~l~~n~i~~~~~------~-~~~~~L~~L~l~~n~l~~~------~~l~  238 (384)
T d2omza2         178 ERLDISSNKVSDI------SVLAKLTNLESLIATNNQISDITP------L-GILTNLDELSLNGNQLKDI------GTLA  238 (384)
T ss_dssp             CEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------G-GGCTTCCEEECCSSCCCCC------GGGG
T ss_pred             ccccccccccccc------cccccccccceeeccCCccCCCCc------c-cccCCCCEEECCCCCCCCc------chhh
Confidence            3333444433221      234567889999999998876321      1 2334799999999998873      2467


Q ss_pred             hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526          385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS  464 (600)
Q Consensus       385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  464 (600)
                      .+++|++|++++|.+++.     . .+..+++|++|++++|.++...      .+..++.++.++++.|.+.+.      
T Consensus       239 ~l~~L~~L~l~~n~l~~~-----~-~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~l~~l~~~~n~l~~~------  300 (384)
T d2omza2         239 SLTNLTDLDLANNQISNL-----A-PLSGLTKLTELKLGANQISNIS------PLAGLTALTNLELNENQLEDI------  300 (384)
T ss_dssp             GCTTCSEEECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCSCC------
T ss_pred             cccccchhccccCccCCC-----C-cccccccCCEeeccCcccCCCC------ccccccccccccccccccccc------
Confidence            889999999999988873     2 3667889999999999887632      255668999999999988753      


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhH
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG  544 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~  544 (600)
                      ..+..++++++|++++|++++...      +..+++|++|++++|.|++..  .+..+     ++|++|++++|+|++..
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~l~~------l~~l~~L~~L~L~~n~l~~l~--~l~~l-----~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSDVS--SLANL-----TNINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG--GGGGC-----TTCCEEECCSSCCCBCG
T ss_pred             cccchhcccCeEECCCCCCCCCcc------cccCCCCCEEECCCCCCCCCh--hHcCC-----CCCCEEECCCCcCCCCh
Confidence            234678899999999999987632      556799999999999998742  23332     78999999999999754


Q ss_pred             HHHHHHHHHhCcccceeEEEccCC
Q 007526          545 AFAIAQALKANEDVAVTSLNLANN  568 (600)
Q Consensus       545 ~~~l~~~~~~~~~~~L~~L~l~~n  568 (600)
                      +  +.    ..+  +|+.|+|++|
T Consensus       368 ~--l~----~l~--~L~~L~L~~N  383 (384)
T d2omza2         368 P--LA----NLT--RITQLGLNDQ  383 (384)
T ss_dssp             G--GT----TCT--TCSEEECCCE
T ss_pred             h--hc----cCC--CCCEeeCCCC
Confidence            3  22    223  3999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=6.5e-22  Score=201.86  Aligned_cols=323  Identities=21%  Similarity=0.192  Sum_probs=225.5

Q ss_pred             CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526          190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL  269 (600)
Q Consensus       190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~  269 (600)
                      .+|++|++++++|++.      ..+..+++|++|++++|+|++.     . .+..+++|++|++++|.+.+..      .
T Consensus        44 ~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~l~~l-----~-~l~~L~~L~~L~L~~n~i~~i~------~  105 (384)
T d2omza2          44 DQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDI-----T-PLKNLTKLVDILMNNNQIADIT------P  105 (384)
T ss_dssp             TTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG------G
T ss_pred             CCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCcCCCC-----c-cccCCccccccccccccccccc------c
Confidence            6899999999998752      1256788999999999999874     2 3677899999999999988632      2


Q ss_pred             HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHH---------------HHHhhcCCCCCE
Q 007526          270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL---------------AKGLEGNKSLRE  334 (600)
Q Consensus       270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l---------------~~~l~~~~~L~~  334 (600)
                      +..+++|+.|+++++.+++...      ......+..+....+.+........               ...+........
T Consensus       106 l~~l~~L~~L~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (384)
T d2omza2         106 LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER  179 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred             cccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccchhhhhcccccccc
Confidence            5667999999999998875322      1234455555554443221110000               001122333444


Q ss_pred             EEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcC
Q 007526          335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN  414 (600)
Q Consensus       335 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~  414 (600)
                      .....+.......      . ...+.++.+++++|.++..     . ....+++|++|++++|.+++.      ..+..+
T Consensus       180 ~~~~~~~~~~~~~------~-~~l~~~~~l~l~~n~i~~~-----~-~~~~~~~L~~L~l~~n~l~~~------~~l~~l  240 (384)
T d2omza2         180 LDISSNKVSDISV------L-AKLTNLESLIATNNQISDI-----T-PLGILTNLDELSLNGNQLKDI------GTLASL  240 (384)
T ss_dssp             EECCSSCCCCCGG------G-GGCTTCSEEECCSSCCCCC-----G-GGGGCTTCCEEECCSSCCCCC------GGGGGC
T ss_pred             ccccccccccccc------c-ccccccceeeccCCccCCC-----C-cccccCCCCEEECCCCCCCCc------chhhcc
Confidence            4444444332111      1 2334799999999998873     2 246788999999999999874      246778


Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHH
Q 007526          415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM  494 (600)
Q Consensus       415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~  494 (600)
                      ++|+.|++++|.+++..      .+..+++|++|++++|++....      .+..++.++.+++++|.+++..      .
T Consensus       241 ~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~l~~l~~~~n~l~~~~------~  302 (384)
T d2omza2         241 TNLTDLDLANNQISNLA------PLSGLTKLTELKLGANQISNIS------PLAGLTALTNLELNENQLEDIS------P  302 (384)
T ss_dssp             TTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCSCCG------G
T ss_pred             cccchhccccCccCCCC------cccccccCCEeeccCcccCCCC------cccccccccccccccccccccc------c
Confidence            99999999999998742      2566799999999999887542      2467889999999999987652      2


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCCCchhH
Q 007526          495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG  574 (600)
Q Consensus       495 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~l~~~~  574 (600)
                      +..+++++.|++++|.+++...  +..+     ++|++|++++|+|++..  .+    ...+  +|++|++++|++++..
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~--l~~l-----~~L~~L~L~~n~l~~l~--~l----~~l~--~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISP--VSSL-----TKLQRLFFANNKVSDVS--SL----ANLT--NINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGG--GGGC-----TTCCEEECCSSCCCCCG--GG----GGCT--TCCEEECCSSCCCBCG
T ss_pred             cchhcccCeEECCCCCCCCCcc--cccC-----CCCCEEECCCCCCCCCh--hH----cCCC--CCCEEECCCCcCCCCh
Confidence            5667999999999999998432  3332     78999999999998643  23    3334  3999999999998753


Q ss_pred             HHHHHHHHHHHHHhhhhhHh
Q 007526          575 QVISLFFSFLLHQIKSLFHS  594 (600)
Q Consensus       575 ~~~~~~~~~l~~~l~~l~~~  594 (600)
                      .  +.    ..+.++.|+++
T Consensus       368 ~--l~----~l~~L~~L~L~  381 (384)
T d2omza2         368 P--LA----NLTRITQLGLN  381 (384)
T ss_dssp             G--GT----TCTTCSEEECC
T ss_pred             h--hc----cCCCCCEeeCC
Confidence            2  21    12456666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.8e-19  Score=173.81  Aligned_cols=194  Identities=18%  Similarity=0.219  Sum_probs=87.1

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCC-CCChhhHHHHH
Q 007526          302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVA  380 (600)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~  380 (600)
                      .+|++|++++|.++.....   ..+..+++|++|++++|.+++..+..+.     ..++|++|++++| .+++.++..+ 
T Consensus        46 ~~L~~LdLs~~~i~~~~l~---~l~~~c~~L~~L~L~~~~l~~~~~~~l~-----~~~~L~~L~Ls~c~~itd~~l~~l-  116 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTLA-----KNSNLVRLNLSGCSGFSEFALQTL-  116 (284)
T ss_dssp             BCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHHT-----TCTTCSEEECTTCBSCCHHHHHHH-
T ss_pred             CCCCEEECCCCccCHHHHH---HHHHhCCCcccccccccCCCcHHHHHHh-----cCCCCcCccccccccccccccchh-
Confidence            3555555555555443332   2233455555555555555554443331     2235555555553 4444433322 


Q ss_pred             HHHHhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCC-CCC
Q 007526          381 EYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYN-PIG  456 (600)
Q Consensus       381 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~  456 (600)
                        ...+++|++|++++| .+++.++......  .++.|+.|+++++  .+++.++..+   ...|++|++|++++| .++
T Consensus       117 --~~~~~~L~~L~ls~c~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~i~~~~l~~l---~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         117 --LSSCSRLDELNLSWCFDFTEKHVQVAVAH--VSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             --HHHCTTCCEEECCCCTTCCHHHHHHHHHH--SCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCC
T ss_pred             --hHHHHhccccccccccccccccchhhhcc--cccccchhhhccccccccccccccc---ccccccccccccccccCCC
Confidence              234555555555554 4444433222111  1345555555543  2444433332   223455555555554 344


Q ss_pred             hhHHHHHHHHHhhCCCccEEeccCc-CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHH
Q 007526          457 ADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA  520 (600)
Q Consensus       457 ~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  520 (600)
                      +.++..+    ..+++|++|++++| .|++.+...+    .++++|++|+++++ +++.+...+.
T Consensus       190 d~~~~~l----~~~~~L~~L~L~~C~~i~~~~l~~L----~~~~~L~~L~l~~~-~~d~~l~~l~  245 (284)
T d2astb2         190 NDCFQEF----FQLNYLQHLSLSRCYDIIPETLLEL----GEIPTLKTLQVFGI-VPDGTLQLLK  245 (284)
T ss_dssp             GGGGGGG----GGCTTCCEEECTTCTTCCGGGGGGG----GGCTTCCEEECTTS-SCTTCHHHHH
T ss_pred             chhhhhh----cccCcCCEEECCCCCCCChHHHHHH----hcCCCCCEEeeeCC-CCHHHHHHHH
Confidence            4433222    23445555555554 3444433222    23355555555554 4444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.4e-18  Score=167.11  Aligned_cols=193  Identities=16%  Similarity=0.198  Sum_probs=86.4

Q ss_pred             CccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCC-CCCchHHHHHHHh
Q 007526          275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSG  353 (600)
Q Consensus       275 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~  353 (600)
                      +|++||++++.+++.++..   .+..+++|++|++++|.+++....    .+..+++|++|++++| .+++.++..+...
T Consensus        47 ~L~~LdLs~~~i~~~~l~~---l~~~c~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHG---ILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCCEEECTTCEECHHHHHH---HHTTBCCCSEEECTTCBCCHHHHH----HHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             CCCEEECCCCccCHHHHHH---HHHhCCCcccccccccCCCcHHHH----HHhcCCCCcCccccccccccccccchhhHH
Confidence            3444444444444322221   223444444554444444433332    2224445555555553 4444444444332


Q ss_pred             hhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCC--CCChHHHHHHHHHhhcCCCccEEEccCC-CCCh
Q 007526          354 LSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGN-NIHS  429 (600)
Q Consensus       354 l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~  429 (600)
                      +    ++|++|++++| .+++.+.....  -..+++|++|+++++  .+++.++..+.   ..+++|++|++++| .+++
T Consensus       120 ~----~~L~~L~ls~c~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~i~~~~l~~l~---~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         120 C----SRLDELNLSWCFDFTEKHVQVAV--AHVSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             C----TTCCEEECCCCTTCCHHHHHHHH--HHSCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEEECTTCTTCCG
T ss_pred             H----Hhccccccccccccccccchhhh--cccccccchhhhcccccccccccccccc---cccccccccccccccCCCc
Confidence            2    24555555554 34443322111  122345555555543  34554433332   23455555555554 3444


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCC-CCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526          430 KGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA  492 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~  492 (600)
                      .+...    +..+++|++|++++| .|++.++..+    ..+++|++|++++| +++.+...+.
T Consensus       191 ~~~~~----l~~~~~L~~L~L~~C~~i~~~~l~~L----~~~~~L~~L~l~~~-~~d~~l~~l~  245 (284)
T d2astb2         191 DCFQE----FFQLNYLQHLSLSRCYDIIPETLLEL----GEIPTLKTLQVFGI-VPDGTLQLLK  245 (284)
T ss_dssp             GGGGG----GGGCTTCCEEECTTCTTCCGGGGGGG----GGCTTCCEEECTTS-SCTTCHHHHH
T ss_pred             hhhhh----hcccCcCCEEECCCCCCCChHHHHHH----hcCCCCCEEeeeCC-CCHHHHHHHH
Confidence            43322    233466666666664 4555543332    34556666666665 4454444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=4.1e-18  Score=167.67  Aligned_cols=225  Identities=21%  Similarity=0.202  Sum_probs=100.0

Q ss_pred             CCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHH
Q 007526          190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL  269 (600)
Q Consensus       190 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~  269 (600)
                      +++++|+|++|.|+....    ..+..+++|++|++++|.+....    +..+..++.|+.|++++|+++..     +..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~l~~n~~~~i~----~~~f~~l~~L~~L~l~~n~l~~l-----~~~   97 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKEL-----PEK   97 (305)
T ss_dssp             TTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBC-----CSS
T ss_pred             CCCCEEECcCCcCCCcCh----hHhhccccccccccccccccccc----hhhhhCCCccCEecccCCccCcC-----ccc
Confidence            455666666665542211    12334555666666665554321    22334455666666666655442     111


Q ss_pred             HhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHH
Q 007526          270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA  349 (600)
Q Consensus       270 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~  349 (600)
                        ....++.|++.+|.+....    ...+.....+..++...+.......  ....+..+++|+.+++++|.+....   
T Consensus        98 --~~~~l~~L~~~~n~l~~l~----~~~~~~~~~~~~l~~~~n~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l~---  166 (305)
T d1xkua_          98 --MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTIP---  166 (305)
T ss_dssp             --CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCSCC---
T ss_pred             --hhhhhhhhhccccchhhhh----hhhhhccccccccccccccccccCC--CccccccccccCccccccCCccccC---
Confidence              1244556666665554321    1122334455555555544322111  0122344555556666555544310   


Q ss_pred             HHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                        .   ...++|+.|++++|.+...    .+..+..++.+++|++++|.+.+.    ....+..+++|++|+|++|.|+.
T Consensus       167 --~---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         167 --Q---GLPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             --S---SCCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred             --c---ccCCccCEEECCCCcCCCC----ChhHhhcccccccccccccccccc----ccccccccccceeeecccccccc
Confidence              0   1122455555555554442    222334455555555555555442    11223334455555555554443


Q ss_pred             HHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          430 KGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                           ++..+..+++|++|+|++|+|+
T Consensus       234 -----lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         234 -----VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             -----CCTTTTTCSSCCEEECCSSCCC
T ss_pred             -----cccccccccCCCEEECCCCccC
Confidence                 1222333444555555444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=8.2e-18  Score=165.50  Aligned_cols=254  Identities=19%  Similarity=0.223  Sum_probs=185.3

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      +++++|+|++|.|+...    ...+..+++|++|++++|.+.....    ..+..+++|++|++++|+++..     +..
T Consensus        31 ~~l~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~l~~n~~~~i~~----~~f~~l~~L~~L~l~~n~l~~l-----~~~   97 (305)
T d1xkua_          31 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKISP----GAFAPLVKLERLYLSKNQLKEL-----PEK   97 (305)
T ss_dssp             TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCSBC-----CSS
T ss_pred             CCCCEEECcCCcCCCcC----hhHhhccccccccccccccccccch----hhhhCCCccCEecccCCccCcC-----ccc
Confidence            57999999999997631    1247788999999999999764322    3356789999999999998753     221


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                        ....++.|.+.+|.+......    .+.....+..++...+......  .....+..+++|+.+++++|.++..+.  
T Consensus        98 --~~~~l~~L~~~~n~l~~l~~~----~~~~~~~~~~l~~~~n~~~~~~--~~~~~~~~l~~L~~l~l~~n~l~~l~~--  167 (305)
T d1xkua_          98 --MPKTLQELRVHENEITKVRKS----VFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIADTNITTIPQ--  167 (305)
T ss_dssp             --CCTTCCEEECCSSCCCBBCHH----HHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECCSSCCCSCCS--
T ss_pred             --hhhhhhhhhccccchhhhhhh----hhhccccccccccccccccccC--CCccccccccccCccccccCCccccCc--
Confidence              246799999999998875332    2344577888999888654322  113345678999999999998865432  


Q ss_pred             HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526          322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  401 (600)
                           ..+++|++|++++|.........    + ...+.++.|++++|.++..    .+..+..+++|++|+|++|.|+.
T Consensus       168 -----~~~~~L~~L~l~~n~~~~~~~~~----~-~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         168 -----GLPPSLTELHLDGNKITKVDAAS----L-KGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK  233 (305)
T ss_dssp             -----SCCTTCSEEECTTSCCCEECTGG----G-TTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred             -----ccCCccCEEECCCCcCCCCChhH----h-hcccccccccccccccccc----ccccccccccceeeecccccccc
Confidence                 13678999999999887653322    2 3445899999999999884    24556789999999999999986


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHH--HHhhcCCCcCEEECcCCCCCh
Q 007526          402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA--RVLKDNSVITSLDLAYNPIGA  457 (600)
Q Consensus       402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i~~  457 (600)
                           ++..+..+++|++|++++|+|+..+...+.  ......++|+.|+|++|++..
T Consensus       234 -----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         234 -----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             -----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             -----cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence                 556788899999999999999874322221  122334678888888887653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=3.3e-19  Score=176.32  Aligned_cols=186  Identities=14%  Similarity=0.237  Sum_probs=82.9

Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                      ..+.++++|++|+|++|++....    ...+..+..|+++++++|.+..    .++..+..++.++.+++++|.+...  
T Consensus        95 ~~i~~L~~L~~L~Ls~N~l~~~~----~~~~~~~~~L~~l~l~~N~~~~----~~p~~l~~l~~L~~l~l~~n~l~~~--  164 (313)
T d1ogqa_          95 PAIAKLTQLHYLYITHTNVSGAI----PDFLSQIKTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNRISGA--  164 (313)
T ss_dssp             GGGGGCTTCSEEEEEEECCEEEC----CGGGGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCEEE--
T ss_pred             cccccccccchhhhccccccccc----cccccchhhhcccccccccccc----cCchhhccCcccceeeccccccccc--
Confidence            33444455555555555444321    1122333555555555554431    1223344455555555555544321  


Q ss_pred             HHHHHHhhcCCCC-CEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCC
Q 007526          320 NALAKGLEGNKSL-RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND  398 (600)
Q Consensus       320 ~~l~~~l~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  398 (600)
                        ++..+..+..+ +.+++++|++++.....+    . .. ....++++.+.+...    ++..+..+++++.+++++|.
T Consensus       165 --ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~----~-~l-~~~~l~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         165 --IPDSYGSFSKLFTSMTISRNRLTGKIPPTF----A-NL-NLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             --CCGGGGCCCTTCCEEECCSSEEEEECCGGG----G-GC-CCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSE
T ss_pred             --cccccccccccccccccccccccccccccc----c-cc-ccccccccccccccc----cccccccccccccccccccc
Confidence              11222333333 556666655543211111    1 11 334455555544332    23333445556666666555


Q ss_pred             CChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                      +...    + ..+..+++|+.|++++|++++.    ++..+.++++|++|+|++|+|+
T Consensus       233 l~~~----~-~~~~~~~~L~~L~Ls~N~l~g~----iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         233 LAFD----L-GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCB----G-GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccc----c-cccccccccccccCccCeeccc----CChHHhCCCCCCEEECcCCccc
Confidence            5432    1 1233445555566655555432    3333444455555555555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.58  E-value=1.6e-18  Score=171.32  Aligned_cols=137  Identities=16%  Similarity=0.177  Sum_probs=74.3

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeec-CCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS-VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA  297 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  297 (600)
                      ++++|+|+++.+...  ..++..+.++++|++|+|++ |+++..    ++..+.++++|++|+|++|++....    +..
T Consensus        51 ~v~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g~----iP~~i~~L~~L~~L~Ls~N~l~~~~----~~~  120 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGAI----PDF  120 (313)
T ss_dssp             CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEEC----CGG
T ss_pred             EEEEEECCCCCCCCC--CCCChHHhcCccccccccccccccccc----cccccccccccchhhhccccccccc----ccc
Confidence            466777777665431  11345566677777777775 555432    3444566677888888877765321    223


Q ss_pred             HhhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCCh
Q 007526          298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA  373 (600)
Q Consensus       298 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~  373 (600)
                      +..+..|+.+++++|.+...    ++..+..++.++.+++++|.+.+.    +...+......++.+++++|.++.
T Consensus       121 ~~~~~~L~~l~l~~N~~~~~----~p~~l~~l~~L~~l~l~~n~l~~~----ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ccchhhhccccccccccccc----CchhhccCcccceeeccccccccc----cccccccccccccccccccccccc
Confidence            34566677777776654321    123345566666666666665432    111121222223555666555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.58  E-value=1.7e-14  Score=127.47  Aligned_cols=126  Identities=12%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             HhCCCCcEEEccCC-CCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          384 KNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      .+.++|++|+|+++ .++++++..+..++..+++|++|++++|.+++.+...++.++..++.|++|+|++|.|++.+...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34456666666553 46666666666666656666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhhCCCccEEeccCcC---CChhHHHHHHHHHhhCCCccEEEccCC
Q 007526          463 LSEVLKFHGNINTLKLGWCQ---IGASGAEFVADMLRYNNTISILDLRAN  509 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~n  509 (600)
                      ++.++..+++|++|++++|.   +++.+...++.++..+++|++|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            66666666666666665542   334445555666666666666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.57  E-value=1.7e-14  Score=127.43  Aligned_cols=134  Identities=12%  Similarity=0.167  Sum_probs=100.5

Q ss_pred             HHHhhhcCCCcccEEECcCC-CCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCC
Q 007526          350 LMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH  428 (600)
Q Consensus       350 l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  428 (600)
                      ....+....+.|++|+|+++ .+++.++..+...+...++|++|+|++|.+++.+...+.+.+..++.|++|++++|.|+
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34444455567777777763 57777777777777777778888888888888777777777777778888888888888


Q ss_pred             hHHHHHHHHHhhcCCCcCEEECcCC---CCChhHHHHHHHHHhhCCCccEEeccCcCC
Q 007526          429 SKGASAIARVLKDNSVITSLDLAYN---PIGADGAKALSEVLKFHGNINTLKLGWCQI  483 (600)
Q Consensus       429 ~~~~~~l~~~l~~~~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i  483 (600)
                      +.+...++.++..+++|++|++++|   .+++.+...++.++..+++|+.|+++++..
T Consensus        86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            8888888888888888888888776   356667777888888888888888877654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.7e-17  Score=156.49  Aligned_cols=211  Identities=16%  Similarity=0.076  Sum_probs=123.0

Q ss_pred             CCccEEEccCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHH
Q 007526          302 STIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA  380 (600)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~  380 (600)
                      ..+.+.+.+++.++..+.        .+ +++++|+|++|.++......+     ...++|++|+|++|.|+.     ++
T Consensus        10 ~~~~~v~C~~~~L~~iP~--------~lp~~l~~L~Ls~N~i~~l~~~~f-----~~l~~L~~L~L~~N~l~~-----l~   71 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP--------DLPKDTTILHLSENLLYTFSLATL-----MPYTRLTQLNLDRAELTK-----LQ   71 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS--------CCCTTCCEEECTTSCCSEEEGGGG-----TTCTTCCEEECTTSCCCE-----EE
T ss_pred             CCCeEEEccCCCCCeeCc--------CcCcCCCEEECcCCcCCCcCHHHh-----hccccccccccccccccc-----cc
Confidence            455566777777664321        12 367788888887765322111     244577788888777775     22


Q ss_pred             HHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHH
Q 007526          381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA  460 (600)
Q Consensus       381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  460 (600)
                       .+..+++|++|+|++|++..     +...+..+++|++|++++|.+.....    ..+...+++++|++++|.+.....
T Consensus        72 -~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~l~~L~l~~n~l~~l~~  141 (266)
T d1p9ag_          72 -VDGTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTLPP  141 (266)
T ss_dssp             -CCSCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCCCT
T ss_pred             -cccccccccccccccccccc-----cccccccccccccccccccccceeec----cccccccccccccccccccceecc
Confidence             23456777777777777765     23345556777777777776655322    223334677777777776654322


Q ss_pred             HHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007526          461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI  540 (600)
Q Consensus       461 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i  540 (600)
                          ..+...++++.|++++|+++......+    ..+++|++|+|++|+|+..... +..     .++|+.|+|++|.+
T Consensus       142 ----~~~~~l~~l~~l~l~~N~l~~~~~~~~----~~l~~L~~L~Ls~N~L~~lp~~-~~~-----~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         142 ----GLLTPTPKLEKLSLANNNLTELPAGLL----NGLENLDTLLLQENSLYTIPKG-FFG-----SHLLPFAFLHGNPW  207 (266)
T ss_dssp             ----TTTTTCTTCCEEECTTSCCSCCCTTTT----TTCTTCCEEECCSSCCCCCCTT-TTT-----TCCCSEEECCSCCB
T ss_pred             ----ccccccccchhcccccccccccCcccc----ccccccceeecccCCCcccChh-HCC-----CCCCCEEEecCCCC
Confidence                122345677777777777766544333    3347777777777777653211 111     15677777777766


Q ss_pred             C-hhHHHHHHHHHHh
Q 007526          541 R-DDGAFAIAQALKA  554 (600)
Q Consensus       541 ~-~~~~~~l~~~~~~  554 (600)
                      . +-....+..+++.
T Consensus       208 ~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         208 LCNCEILYFRRWLQD  222 (266)
T ss_dssp             CCSGGGHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHh
Confidence            5 2223334444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-16  Score=152.52  Aligned_cols=106  Identities=22%  Similarity=0.198  Sum_probs=43.7

Q ss_pred             CccEEEccCCCCChHHHHHHHHHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHH
Q 007526          219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL  298 (600)
Q Consensus       219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  298 (600)
                      ++++|+|++|+|+...    ...+..+++|++|+|++|+++...      ....+++|++|++++|+++..     ...+
T Consensus        32 ~l~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~L~~N~l~~l~------~~~~l~~L~~L~Ls~N~l~~~-----~~~~   96 (266)
T d1p9ag_          32 DTTILHLSENLLYTFS----LATLMPYTRLTQLNLDRAELTKLQ------VDGTLPVLGTLDLSHNQLQSL-----PLLG   96 (266)
T ss_dssp             TCCEEECTTSCCSEEE----GGGGTTCTTCCEEECTTSCCCEEE------CCSCCTTCCEEECCSSCCSSC-----CCCT
T ss_pred             CCCEEECcCCcCCCcC----HHHhhccccccccccccccccccc------ccccccccccccccccccccc-----cccc
Confidence            3555555555544321    122233445555555555544311      012235555555555555321     1122


Q ss_pred             hhCCCccEEEccCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007526          299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG  343 (600)
Q Consensus       299 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  343 (600)
                      ..+++|+.|++++|.+.....    ..+..+.++++|++++|.+.
T Consensus        97 ~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCC
T ss_pred             ccccccccccccccccceeec----cccccccccccccccccccc
Confidence            334444444444444332211    11223444555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=6.4e-14  Score=123.73  Aligned_cols=130  Identities=25%  Similarity=0.251  Sum_probs=88.9

Q ss_pred             HHHhCCCCcEEEccC-CCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHH
Q 007526          382 YIKNCKSLLWINLYM-NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA  460 (600)
Q Consensus       382 ~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  460 (600)
                      ...+.++|++|++++ +.+++.++..+..++..+++|++|++++|.+++.+...++..+..++.++.+++++|.+++++.
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            334556777777765 3577777777777776667777777777777777777777777767777777777777777777


Q ss_pred             HHHHHHHhhCCCccEEecc--CcCCChhHHHHHHHHHhhCCCccEEEccCCCC
Q 007526          461 KALSEVLKFHGNINTLKLG--WCQIGASGAEFVADMLRYNNTISILDLRANGL  511 (600)
Q Consensus       461 ~~l~~~l~~~~~L~~L~l~--~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  511 (600)
                      ..+...+..+++|+.++|+  +|.+++.+...++.++.++++|++|+++.+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            7777777777777665443  45677777777777777777777777765543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.9e-16  Score=153.80  Aligned_cols=138  Identities=17%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      +.++++|++|++++|.+...    ....+.....|+.+++++|.++....    ..+..+++|++|++++|.+.....  
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~N~l~~l~~--  170 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPE--  170 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECT--
T ss_pred             hcccccCCEEecCCcccccc----cccccchhcccchhhhccccccccCh----hHhccccchhhcccccCcccccch--
Confidence            34555555555555544331    11123334555555665555554321    223334556666666655543321  


Q ss_pred             HHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007526          463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR  541 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~  541 (600)
                        ..+..+++|+++++++|++++..+..    +..+++|++|++++|.+.......+...     .+|++|++++|++.
T Consensus       171 --~~f~~l~~L~~l~l~~N~l~~i~~~~----f~~l~~L~~L~l~~N~i~~~~~~~~~~~-----~~L~~L~l~~N~l~  238 (284)
T d1ozna_         171 --RAFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYLRLNDNPWV  238 (284)
T ss_dssp             --TTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEEECCSSCEE
T ss_pred             --hhhccccccchhhhhhccccccChhH----hhhhhhcccccccccccccccccccccc-----cccCEEEecCCCCC
Confidence              12234455666666666555543332    2333566666666666555444444332     45666666666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.2e-17  Score=156.09  Aligned_cols=207  Identities=17%  Similarity=0.141  Sum_probs=145.1

Q ss_pred             CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccC-CCCChHHHHHHHH
Q 007526          331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM-NDIGDEGAEKIAD  409 (600)
Q Consensus       331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~  409 (600)
                      ++++|+|++|+++......+     ...++|++|++++|.+...    ....+..++.+.+++... +.+.+.    -..
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f-----~~l~~L~~L~ls~n~l~~i----~~~~~~~~~~~~~l~~~~~~~~~~l----~~~   99 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASF-----RACRNLTILWLHSNVLARI----DAAAFTGLALLEQLDLSDNAQLRSV----DPA   99 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTT-----TTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSCTTCCCC----CTT
T ss_pred             CCCEEECcCCcCCCCCHHHh-----hcccccccccccccccccc----ccccccccccccccccccccccccc----cch
Confidence            45666666666654221111     2334677777777766653    122344566777777643 355442    123


Q ss_pred             HhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHH
Q 007526          410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAE  489 (600)
Q Consensus       410 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~  489 (600)
                      .+..+++|++|++++|.+.....    ..+...++|+.+++++|.|+....    ..+..+++|++|++++|.+......
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQELGP----GLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             hhcccccCCEEecCCcccccccc----cccchhcccchhhhccccccccCh----hHhccccchhhcccccCcccccchh
Confidence            46678999999999998865432    234456899999999999876533    2346678999999999999877554


Q ss_pred             HHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCcccceeEEEccCCC
Q 007526          490 FVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF  569 (600)
Q Consensus       490 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~~L~l~~n~  569 (600)
                      .+    ..+++|+++++++|++++..+..+...     ++|++||+++|+|.......+.....      |++|++++|+
T Consensus       172 ~f----~~l~~L~~l~l~~N~l~~i~~~~f~~l-----~~L~~L~l~~N~i~~~~~~~~~~~~~------L~~L~l~~N~  236 (284)
T d1ozna_         172 AF----RGLHSLDRLLLHQNRVAHVHPHAFRDL-----GRLMTLYLFANNLSALPTEALAPLRA------LQYLRLNDNP  236 (284)
T ss_dssp             TT----TTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCHHHHTTCTT------CCEEECCSSC
T ss_pred             hh----ccccccchhhhhhccccccChhHhhhh-----hhcccccccccccccccccccccccc------cCEEEecCCC
Confidence            44    455999999999999998766555544     78999999999999877766654433      9999999999


Q ss_pred             Cchh
Q 007526          570 LTKF  573 (600)
Q Consensus       570 l~~~  573 (600)
                      +...
T Consensus       237 l~C~  240 (284)
T d1ozna_         237 WVCD  240 (284)
T ss_dssp             EECS
T ss_pred             CCCC
Confidence            8854

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=1.8e-13  Score=120.80  Aligned_cols=125  Identities=21%  Similarity=0.273  Sum_probs=66.7

Q ss_pred             CCCccEEEccC-CCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHH
Q 007526          414 NRTITTIDLGG-NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA  492 (600)
Q Consensus       414 ~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~  492 (600)
                      .+.|++|++++ +.+++.+...++.++..+++|++|++++|.+++.+...++..+..++.++.+++++|.+++.+...+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            45555555554 34555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhhCCCccEEEc--cCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007526          493 DMLRYNNTISILDL--RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE  539 (600)
Q Consensus       493 ~~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~  539 (600)
                      +.+.++++|+.++|  ++|.+++.+...++.++.. +++|++|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~-n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHh-CCCcCEEeCcCCC
Confidence            55555555554333  2345555555555555443 3555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=8.2e-15  Score=136.99  Aligned_cols=168  Identities=23%  Similarity=0.268  Sum_probs=75.8

Q ss_pred             CCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHH
Q 007526          246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG  325 (600)
Q Consensus       246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~  325 (600)
                      .+|++|++.+|++++     + ..+..+++|++|++++|.+++.      ..+..+++++.+++++|.++...      .
T Consensus        41 ~~L~~L~l~~~~i~~-----l-~~l~~l~~L~~L~ls~n~i~~~------~~l~~l~~l~~l~~~~n~~~~i~------~  102 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-----I-EGVQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLKNVS------A  102 (227)
T ss_dssp             HTCCEEECTTSCCCC-----C-TTGGGCTTCCEEECCSSCCCCC------GGGTTCCSCCEEECCSCCCSCCG------G
T ss_pred             CCcCEEECCCCCCCc-----c-hhHhcCCCCcEeecCCceeecc------ccccccccccccccccccccccc------c
Confidence            445555555555544     1 1133445555555555555431      11334555555555555544321      2


Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                      +..+++|+.++++++...+...      + ...+.+..+.++++.+...      ..+..+++|++|++++|.+.+.   
T Consensus       103 l~~l~~L~~l~l~~~~~~~~~~------~-~~~~~~~~l~~~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~---  166 (227)
T d1h6ua2         103 IAGLQSIKTLDLTSTQITDVTP------L-AGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDL---  166 (227)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGG------G-TTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCC---
T ss_pred             ccccccccccccccccccccch------h-ccccchhhhhchhhhhchh------hhhccccccccccccccccccc---
Confidence            3345556666665554433100      1 1222455555555544432      1133445555555555554432   


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG  456 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  456 (600)
                         ..+..+++|++|++++|++++..      .+..+++|++|+|++|+|+
T Consensus       167 ---~~l~~l~~L~~L~Ls~n~l~~l~------~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         167 ---TPLANLSKLTTLKADDNKISDIS------PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             ---GGGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECTTSCCC
T ss_pred             ---hhhcccccceecccCCCccCCCh------hhcCCCCCCEEECcCCcCC
Confidence               11334445555555555444311      1233344444444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.6e-14  Score=134.99  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=57.0

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +++.+++++|.+++.      ..+..+++|+.++++++...+.      ..+...+.++.+.++++.+....      .+
T Consensus        86 ~l~~l~~~~n~~~~i------~~l~~l~~L~~l~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~------~~  147 (227)
T d1h6ua2          86 KITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNIS------PL  147 (227)
T ss_dssp             SCCEEECCSCCCSCC------GGGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCCG------GG
T ss_pred             ccccccccccccccc------cccccccccccccccccccccc------chhccccchhhhhchhhhhchhh------hh
Confidence            444555554444431      1233445555555555544331      11233445555555555443321      12


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      ..+++|++|++++|.+.+..      .+..+++|++|++++|++++...      +.++++|++|++++|+|++
T Consensus       148 ~~~~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~Ls~n~l~~l~~------l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         148 AGLTNLQYLSIGNAQVSDLT------PLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCB
T ss_pred             ccccccccccccccccccch------hhcccccceecccCCCccCCChh------hcCCCCCCEEECcCCcCCC
Confidence            33455555555555544321      12344555555555555554321      3344555555555555554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=5.2e-14  Score=129.56  Aligned_cols=102  Identities=25%  Similarity=0.259  Sum_probs=43.5

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      +|+.|++++|.+++     ++ .+..+++|+.|++++|.+.+.      ..+..++.++.+++++|.+++..      .+
T Consensus        91 ~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~~~~~~~------~~l~~l~~l~~l~~~~n~l~~~~------~~  152 (210)
T d1h6ta2          91 NLGWLFLDENKVKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDIT------VL  152 (210)
T ss_dssp             TCCEEECCSSCCCC-----GG-GGTTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCCG------GG
T ss_pred             cccccccccccccc-----cc-ccccccccccccccccccccc------ccccccccccccccccccccccc------cc
Confidence            44555555444443     21 234444555555554444331      12333444555555554444321      12


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                      ..+++|+++++++|.+++..      .+..+++|++|++++|+|++
T Consensus       153 ~~l~~L~~l~l~~n~l~~i~------~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         153 SRLTKLDTLSLEDNQISDIV------PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             GGCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccccccc------cccCCCCCCEEECCCCCCCC
Confidence            23344555555555443321      12334445555555544443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=6.5e-14  Score=128.90  Aligned_cols=16  Identities=31%  Similarity=0.239  Sum_probs=7.0

Q ss_pred             cCCCCCEEEccCCCCC
Q 007526          328 GNKSLRELHLHGNSIG  343 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~  343 (600)
                      .++.++.+++++|.++
T Consensus       132 ~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         132 HLPQLESLYLGNNKIT  147 (210)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccc
Confidence            3444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=2.2e-13  Score=124.14  Aligned_cols=16  Identities=13%  Similarity=0.254  Sum_probs=7.4

Q ss_pred             cCCCCCEEEccCCCCC
Q 007526          328 GNKSLRELHLHGNSIG  343 (600)
Q Consensus       328 ~~~~L~~L~Ls~n~l~  343 (600)
                      .+++|++|++++|.++
T Consensus        60 ~l~nL~~L~Ls~N~l~   75 (199)
T d2omxa2          60 YLNNLTQINFSNNQLT   75 (199)
T ss_dssp             GCTTCCEEECCSSCCC
T ss_pred             cCCCcCcCcccccccc
Confidence            3444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=1.2e-13  Score=126.02  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=17.6

Q ss_pred             HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                      ..+++|++|++.+|.+++.      ..+..+++|++|++++|++++
T Consensus       147 ~~~~~L~~L~l~~n~l~~l------~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         147 SGLTSLQQLNFSSNQVTDL------KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccccccccccCC------ccccCCCCCCEEECCCCCCCC
Confidence            3444444444444444431      123344444555555444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.38  E-value=6.2e-14  Score=139.88  Aligned_cols=302  Identities=18%  Similarity=0.177  Sum_probs=183.3

Q ss_pred             CCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007526          162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI  241 (600)
Q Consensus       162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~  241 (600)
                      .++++|||+++.++.     +++   ..++|++|++++|.|+.     ++.   ...+|++|++++|.++..     .+.
T Consensus        38 ~~l~~LdLs~~~L~~-----lp~---~~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l-----~~l   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-----LPE---LPPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKAL-----SDL   96 (353)
T ss_dssp             HTCSEEECTTSCCSC-----CCS---CCTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCC-----CSC
T ss_pred             cCCCEEEeCCCCCCC-----CCC---CCCCCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchh-----hhh
Confidence            468899999998875     332   24789999999999873     222   235799999999988652     111


Q ss_pred             HhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHHHH
Q 007526          242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA  321 (600)
Q Consensus       242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~  321 (600)
                         .+.|++|++++|.+...     +. ...+++|++|+++++.+....        .....+..+.+..+.....    
T Consensus        97 ---p~~L~~L~L~~n~l~~l-----p~-~~~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~~~~~~~~~----  155 (353)
T d1jl5a_          97 ---PPLLEYLGVSNNQLEKL-----PE-LQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEEL----  155 (353)
T ss_dssp             ---CTTCCEEECCSSCCSSC-----CC-CTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSC----
T ss_pred             ---ccccccccccccccccc-----cc-hhhhccceeeccccccccccc--------cccccccchhhcccccccc----
Confidence               25699999999998763     22 345688999999998875321        1246777888777664432    


Q ss_pred             HHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCCh
Q 007526          322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD  401 (600)
Q Consensus       322 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  401 (600)
                        ..+..++.++.|++++|.+....         ......+.+...++.+..     ++ .+..++.|+.+++++|....
T Consensus       156 --~~l~~l~~l~~L~l~~n~~~~~~---------~~~~~~~~l~~~~~~~~~-----~~-~~~~l~~L~~l~l~~n~~~~  218 (353)
T d1jl5a_         156 --PELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT  218 (353)
T ss_dssp             --CCCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS
T ss_pred             --ccccccccceecccccccccccc---------cccccccccccccccccc-----cc-cccccccccccccccccccc
Confidence              12446778899999988765421         111245566666665543     11 13467788888888886554


Q ss_pred             HHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCc
Q 007526          402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC  481 (600)
Q Consensus       402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n  481 (600)
                      .        .....++..+.+.++.+....        ...+.+...++..+.+....        .........++..+
T Consensus       219 ~--------~~~~~~l~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~l~--------~l~~~~~~~~~~~~  274 (353)
T d1jl5a_         219 L--------PDLPPSLEALNVRDNYLTDLP--------ELPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSN  274 (353)
T ss_dssp             C--------CSCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSEES--------CCCTTCCEEECCSS
T ss_pred             c--------ccccccccccccccccccccc--------cccccccccccccccccccc--------cccchhcccccccC
Confidence            1        122456778888877765421        11255666776665443210        00123445555555


Q ss_pred             CCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHHHHHHHHHHhCccccee
Q 007526          482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVT  561 (600)
Q Consensus       482 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~~~l~~~~~~~~~~~L~  561 (600)
                      .+....        ..+++|++|++++|.|+...     ..    .++|++|++++|+|+... .    ..   .  .|+
T Consensus       275 ~~~~~~--------~~~~~L~~L~Ls~N~l~~lp-----~~----~~~L~~L~L~~N~L~~l~-~----~~---~--~L~  327 (353)
T d1jl5a_         275 EIRSLC--------DLPPSLEELNVSNNKLIELP-----AL----PPRLERLIASFNHLAEVP-E----LP---Q--NLK  327 (353)
T ss_dssp             CCSEEC--------CCCTTCCEEECCSSCCSCCC-----CC----CTTCCEEECCSSCCSCCC-C----CC---T--TCC
T ss_pred             cccccc--------ccCCCCCEEECCCCccCccc-----cc----cCCCCEEECCCCcCCccc-c----cc---C--CCC
Confidence            554331        12356777777777666421     11    156777777777666421 0    11   1  267


Q ss_pred             EEEccCCCCchh
Q 007526          562 SLNLANNFLTKF  573 (600)
Q Consensus       562 ~L~l~~n~l~~~  573 (600)
                      +|++++|+++..
T Consensus       328 ~L~L~~N~L~~l  339 (353)
T d1jl5a_         328 QLHVEYNPLREF  339 (353)
T ss_dssp             EEECCSSCCSSC
T ss_pred             EEECcCCcCCCC
Confidence            777777776654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.25  E-value=9.1e-12  Score=123.79  Aligned_cols=280  Identities=16%  Similarity=0.134  Sum_probs=178.5

Q ss_pred             CCCccEEEcCCCCCCHHHHHHHHHHhccCCCccEEEcccCCCCHHHHHHHHHHHhcC-CCccEEEccCCCCChHHHHHHH
Q 007526          161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN-IALKTLNLSGNPIGDEGVKCLC  239 (600)
Q Consensus       161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~  239 (600)
                      .++|++|+|++|.|+.     +++   ...+|++|++++|.++..         ..+ +.|++|++++|.+...     +
T Consensus        57 ~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l---------~~lp~~L~~L~L~~n~l~~l-----p  114 (353)
T d1jl5a_          57 PPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKAL---------SDLPPLLEYLGVSNNQLEKL-----P  114 (353)
T ss_dssp             CTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCC---------CSCCTTCCEEECCSSCCSSC-----C
T ss_pred             CCCCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchh---------hhhccccccccccccccccc-----c
Confidence            5789999999999985     232   247999999999987632         122 4699999999998753     2


Q ss_pred             HHHhhCCCcCEEEeecCCCChHHHHHHHHHHhcCCCccEEeecCCCCChhhHHHHHHHHhhCCCccEEEccCCCCChHHH
Q 007526          240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA  319 (600)
Q Consensus       240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  319 (600)
                       ....+++|+.|+++++.+....        .....+..+.+.++...+.      ..+..++.++.+++.+|...... 
T Consensus       115 -~~~~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~~~~~~~~~------~~l~~l~~l~~L~l~~n~~~~~~-  178 (353)
T d1jl5a_         115 -ELQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKKLP-  178 (353)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSC------CCCTTCTTCCEEECCSSCCSSCC-
T ss_pred             -chhhhccceeeccccccccccc--------cccccccchhhcccccccc------ccccccccceecccccccccccc-
Confidence             2356789999999999876521        1235678888877765431      12345788999999988764321 


Q ss_pred             HHHHHHhhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCC
Q 007526          320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI  399 (600)
Q Consensus       320 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  399 (600)
                             ......+.+....+.+....      .. ...+.|+.+++++|....     ++   ....++..+.+..+.+
T Consensus       179 -------~~~~~~~~l~~~~~~~~~~~------~~-~~l~~L~~l~l~~n~~~~-----~~---~~~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         179 -------DLPLSLESIVAGNNILEELP------EL-QNLPFLTTIYADNNLLKT-----LP---DLPPSLEALNVRDNYL  236 (353)
T ss_dssp             -------CCCTTCCEEECCSSCCSSCC------CC-TTCTTCCEEECCSSCCSS-----CC---SCCTTCCEEECCSSCC
T ss_pred             -------cccccccccccccccccccc------cc-cccccccccccccccccc-----cc---cccccccccccccccc
Confidence                   12234556666665543210      01 233478888888886654     21   2345678888888776


Q ss_pred             ChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEec
Q 007526          400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL  478 (600)
Q Consensus       400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l  478 (600)
                      .+.        ......+...++..+.+...         ... ......++..+.+...        ....++|++|++
T Consensus       237 ~~~--------~~~~~~l~~~~~~~~~~~~l---------~~l~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~L  291 (353)
T d1jl5a_         237 TDL--------PELPQSLTFLDVSENIFSGL---------SELPPNLYYLNASSNEIRSL--------CDLPPSLEELNV  291 (353)
T ss_dssp             SCC--------CCCCTTCCEEECCSSCCSEE---------SCCCTTCCEEECCSSCCSEE--------CCCCTTCCEEEC
T ss_pred             ccc--------cccccccccccccccccccc---------ccccchhcccccccCccccc--------cccCCCCCEEEC
Confidence            542        11235666777766655431         111 3456667766665432        123467888888


Q ss_pred             cCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007526          479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD  542 (600)
Q Consensus       479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~  542 (600)
                      ++|+++..+.        ..++|+.|+|++|+|++..     ..    ..+|++|++++|+|+.
T Consensus       292 s~N~l~~lp~--------~~~~L~~L~L~~N~L~~l~-----~~----~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         292 SNNKLIELPA--------LPPRLERLIASFNHLAEVP-----EL----PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CSSCCSCCCC--------CCTTCCEEECCSSCCSCCC-----CC----CTTCCEEECCSSCCSS
T ss_pred             CCCccCcccc--------ccCCCCEEECCCCcCCccc-----cc----cCCCCEEECcCCcCCC
Confidence            8887765431        1377888888888777632     11    1568888888888774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.2e-12  Score=111.80  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=46.2

Q ss_pred             cccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007526          360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL  439 (600)
Q Consensus       360 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l  439 (600)
                      ++++|+|++|.|+.     ++..+..+++|++|++++|.|...      +.+..+++|++|++++|+++......    +
T Consensus        19 ~lr~L~L~~n~I~~-----i~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~~~----~   83 (162)
T d1a9na_          19 RDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGL----D   83 (162)
T ss_dssp             SCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCH----H
T ss_pred             cCcEEECCCCCCCc-----cCccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCCccc----c
Confidence            34444444444443     222223344455555555544431      12334445555555555554422111    1


Q ss_pred             hcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCCh
Q 007526          440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA  485 (600)
Q Consensus       440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~  485 (600)
                      ..+++|++|++++|+|.+...  + ..+..+++|++|++++|.+++
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~--l-~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGG
T ss_pred             ccccccccceecccccccccc--c-cccccccccchhhcCCCcccc
Confidence            123555555555555543211  0 122344555555555554433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.4e-12  Score=112.55  Aligned_cols=111  Identities=17%  Similarity=0.086  Sum_probs=52.9

Q ss_pred             hCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHH
Q 007526          385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS  464 (600)
Q Consensus       385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  464 (600)
                      ++.++++|+|++|+|+.     +......+++|+.|++++|.|+..      ..+..+++|++|++++|.|+.....   
T Consensus        16 n~~~lr~L~L~~n~I~~-----i~~~~~~l~~L~~L~Ls~N~i~~l------~~~~~l~~L~~L~ls~N~i~~l~~~---   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV-----IENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEG---   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCS-----CCCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSC---
T ss_pred             CcCcCcEEECCCCCCCc-----cCccccccccCCEEECCCCCCCcc------CCcccCcchhhhhcccccccCCCcc---
Confidence            34456666666666654     222223455666666666665542      1134445555666665555443211   


Q ss_pred             HHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       465 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                       ....+++|++|++++|+|.+...  + ..+..+++|++|++++|.+++
T Consensus        82 -~~~~l~~L~~L~L~~N~i~~~~~--l-~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          82 -LDQALPDLTELILTNNSLVELGD--L-DPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             -HHHHCTTCCEEECCSCCCCCGGG--G-GGGGGCTTCCEEECCSSGGGG
T ss_pred             -ccccccccccceecccccccccc--c-cccccccccchhhcCCCcccc
Confidence             11234455555555555544311  0 112334555555555554443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=7.7e-12  Score=103.89  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA  462 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  462 (600)
                      +..+++|++|++++|.|++     ++..+..+++|+.|++++|.|++..      .+..+++|++|++++|+|++...  
T Consensus        16 l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~l~------~~~~l~~L~~L~l~~N~i~~~~~--   82 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVD------GVANLPRLQELLLCNNRLQQSAA--   82 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCCG------GGTTCSSCCEEECCSSCCCSSST--
T ss_pred             cccCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccccC------ccccccccCeEECCCCccCCCCC--
Confidence            3444555555555555543     2233444455555555555554421      13334555555555555443210  


Q ss_pred             HHHHHhhCCCccEEeccCcCC
Q 007526          463 LSEVLKFHGNINTLKLGWCQI  483 (600)
Q Consensus       463 l~~~l~~~~~L~~L~l~~n~i  483 (600)
                      + ..+..+++|++|++++|.+
T Consensus        83 ~-~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          83 I-QPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             T-GGGGGCTTCCEEECTTSGG
T ss_pred             c-hhhcCCCCCCEEECCCCcC
Confidence            0 1123344555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=1.4e-11  Score=102.31  Aligned_cols=104  Identities=19%  Similarity=0.194  Sum_probs=67.5

Q ss_pred             cEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhh
Q 007526          390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF  469 (600)
Q Consensus       390 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  469 (600)
                      +.|++++|++++     +. .+..++.|++|++++|.|+.     ++..+..+++|++|++++|.|++..      .+..
T Consensus         1 R~L~Ls~n~l~~-----l~-~l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~l~------~~~~   63 (124)
T d1dcea3           1 RVLHLAHKDLTV-----LC-HLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENVD------GVAN   63 (124)
T ss_dssp             SEEECTTSCCSS-----CC-CGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCCG------GGTT
T ss_pred             CEEEcCCCCCCC-----Cc-ccccCCCCCEEECCCCccCc-----chhhhhhhhcccccccccccccccC------cccc
Confidence            467777777765     22 35566778888888887765     2334555677888888887776541      2456


Q ss_pred             CCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       470 ~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      +++|++|++++|+|++....   ..+..+++|++|++++|.+++
T Consensus        64 l~~L~~L~l~~N~i~~~~~~---~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          64 LPRLQELLLCNNRLQQSAAI---QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CSSCCEEECCSSCCCSSSTT---GGGGGCTTCCEEECTTSGGGG
T ss_pred             ccccCeEECCCCccCCCCCc---hhhcCCCCCCEEECCCCcCCc
Confidence            67777777777777654321   224456777777777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=2.1e-13  Score=123.55  Aligned_cols=110  Identities=19%  Similarity=0.158  Sum_probs=56.4

Q ss_pred             CCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHH
Q 007526          388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL  467 (600)
Q Consensus       388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  467 (600)
                      ++++|+|++|.|+...   -...+..+++|++|++++|.+.....    ..+...++|++|+|++|+|......    .+
T Consensus        30 ~l~~L~Ls~N~i~~~~---~~~~f~~l~~L~~L~L~~N~i~~~~~----~~~~~~~~L~~L~Ls~N~l~~l~~~----~F   98 (192)
T d1w8aa_          30 HTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEP----NAFEGASHIQELQLGENKIKEISNK----MF   98 (192)
T ss_dssp             TCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSCCCCEECSS----SS
T ss_pred             CCCEEEeCCCCCcccc---cccccCCCceEeeeeccccccccccc----cccccccccceeeeccccccccCHH----HH
Confidence            4555555555553210   01223445556666666655544321    2233345666666666655543221    22


Q ss_pred             hhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       468 ~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                      ..+++|++|++++|+|+......|    ...++|++|+|++|.+.
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~~~f----~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTTCCBC
T ss_pred             hCCCcccccccCCccccccCHHHh----cCCcccccccccccccc
Confidence            445566666666666665544333    23367777777777655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.1e-12  Score=115.92  Aligned_cols=113  Identities=20%  Similarity=0.190  Sum_probs=51.2

Q ss_pred             HHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhH
Q 007526          380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG  459 (600)
Q Consensus       380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  459 (600)
                      +..+..+++|++|+|++|.|++.      ..+..+++|++|++++|.|++..  .+..   ..++|++|++++|.|+.. 
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i------~~l~~l~~L~~L~Ls~N~i~~i~--~~~~---~~~~L~~L~l~~N~i~~l-  108 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKKIE--NLDA---VADTLEELWISYNQIASL-  108 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC------CCHHHHTTCCEEECCEEEECSCS--SHHH---HHHHCCEEECSEEECCCH-
T ss_pred             hhHHhcccccceeECcccCCCCc------ccccCCccccChhhccccccccc--cccc---cccccccccccccccccc-
Confidence            34455566666666666655541      12333455555555555554321  0111   113455555555555432 


Q ss_pred             HHHHHHHHhhCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCC
Q 007526          460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR  512 (600)
Q Consensus       460 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  512 (600)
                       .    .+..+++|++|++++|+|++....   ..+..+++|++|++++|.+.
T Consensus       109 -~----~~~~l~~L~~L~L~~N~i~~~~~~---~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         109 -S----GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             -H----HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSSHHH
T ss_pred             -c----cccccccccccccccchhcccccc---ccccCCCccceeecCCCccc
Confidence             1    122233455555555555443210   12333455555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.95  E-value=1.3e-11  Score=111.78  Aligned_cols=108  Identities=24%  Similarity=0.292  Sum_probs=46.9

Q ss_pred             hhcCCCCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHH
Q 007526          326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE  405 (600)
Q Consensus       326 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  405 (600)
                      +..+++|++|++++|.+++..  .+ ..    .++|+.|++++|.++.     ++.....+++|++|++++|.+++.   
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~--~l-~~----l~~L~~L~Ls~N~i~~-----i~~~~~~~~~L~~L~l~~N~i~~l---  108 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKIS--SL-SG----MENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASL---  108 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCC--CH-HH----HTTCCEEECCEEEECS-----CSSHHHHHHHCCEEECSEEECCCH---
T ss_pred             HhcccccceeECcccCCCCcc--cc-cC----CccccChhhccccccc-----cccccccccccccccccccccccc---
Confidence            344555666666655554311  11 11    1245555555555543     221222233455555555555441   


Q ss_pred             HHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC
Q 007526          406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP  454 (600)
Q Consensus       406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  454 (600)
                         ..+..+++|++|++++|+|++...   ...+..+++|++|+|++|+
T Consensus       109 ---~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         109 ---SGIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ---HHHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSSH
T ss_pred             ---ccccccccccccccccchhccccc---cccccCCCccceeecCCCc
Confidence               112233445555555555544321   0123333555555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=1.2e-11  Score=111.62  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=99.4

Q ss_pred             CcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHh
Q 007526          389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK  468 (600)
Q Consensus       389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  468 (600)
                      .+.++.+++.++.     ++..+  .+++++|+|++|+|+...   -...+..+++|++|+|++|.+.....    ..+.
T Consensus        10 ~~~v~Cs~~~L~~-----iP~~l--p~~l~~L~Ls~N~i~~~~---~~~~f~~l~~L~~L~L~~N~i~~~~~----~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-----IPRDI--PLHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEP----NAFE   75 (192)
T ss_dssp             TTEEECTTSCCSS-----CCSCC--CTTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCT----TTTT
T ss_pred             CCEEEEeCCCcCc-----cCCCC--CCCCCEEEeCCCCCcccc---cccccCCCceEeeeeccccccccccc----cccc
Confidence            3567777777665     33333  268999999999996421   11234556999999999998875532    3445


Q ss_pred             hCCCccEEeccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh-hHHHH
Q 007526          469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFA  547 (600)
Q Consensus       469 ~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~-~~~~~  547 (600)
                      ..++|++|++++|+|.......|    ..+++|++|+|++|.|+......|...     ++|++|+|++|.+.. .....
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F----~~l~~L~~L~L~~N~l~~i~~~~f~~l-----~~L~~l~L~~N~~~~~~~~~~  146 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMF----LGLHQLKTLNLYDNQISCVMPGSFEHL-----NSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSS----TTCTTCCEEECCSSCCCEECTTSSTTC-----TTCCEEECTTCCBCCSGGGHH
T ss_pred             cccccceeeeccccccccCHHHH----hCCCcccccccCCccccccCHHHhcCC-----cccccccccccccccccchHH
Confidence            67899999999999988766554    445999999999999998655545443     789999999998863 23334


Q ss_pred             HHHH
Q 007526          548 IAQA  551 (600)
Q Consensus       548 l~~~  551 (600)
                      +...
T Consensus       147 ~~~~  150 (192)
T d1w8aa_         147 FAEW  150 (192)
T ss_dssp             HHHH
T ss_pred             Hhhh
Confidence            4443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=7e-13  Score=124.87  Aligned_cols=115  Identities=13%  Similarity=0.027  Sum_probs=50.0

Q ss_pred             HHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCChhHHH
Q 007526          383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAK  461 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~  461 (600)
                      +..+++|++|++++|.+.+...   ...+.....+..+...++.+.......    +..+ ..++.|++++|.++.....
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~---~~~~~~l~~l~~~~~~n~~l~~i~~~~----~~~~~~~l~~L~l~~n~l~~i~~~  171 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPD---VHKIHSLQKVLLDIQDNINIHTIERNS----FVGLSFESVILWLNKNGIQEIHNC  171 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCC---CTTTCBSSCEEEEEESCTTCCEECTTS----STTSBSSCEEEECCSSCCCEECTT
T ss_pred             ccccccccccccchhhhccccc---ccccccccccccccccccccccccccc----cccccccceeeecccccccccccc
Confidence            3455566666666665543210   001122334444444444444321111    1111 3556666666655443211


Q ss_pred             HHHHHHhhCCCccEE-eccCcCCChhHHHHHHHHHhhCCCccEEEccCCCCCh
Q 007526          462 ALSEVLKFHGNINTL-KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD  513 (600)
Q Consensus       462 ~l~~~l~~~~~L~~L-~l~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  513 (600)
                      .     ....+++.+ .+++|+++..+...    +.++++|++|++++|+|+.
T Consensus       172 ~-----~~~~~l~~~~~l~~n~l~~l~~~~----f~~l~~L~~L~Ls~N~l~~  215 (242)
T d1xwdc1         172 A-----FNGTQLDELNLSDNNNLEELPNDV----FHGASGPVILDISRTRIHS  215 (242)
T ss_dssp             T-----TTTCCEEEEECTTCTTCCCCCTTT----TTTSCCCSEEECTTSCCCC
T ss_pred             c-----ccchhhhccccccccccccccHHH----hcCCCCCCEEECCCCcCCc
Confidence            1     112333333 34455555443322    3334666666666666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.8e-12  Score=119.67  Aligned_cols=186  Identities=13%  Similarity=0.033  Sum_probs=102.5

Q ss_pred             CCCEEEccCCCCCchHHHHHHHhhhcCCCcccEEECcCCCCChhhHHHH-HHHHHhCCCCcEEEccC-CCCChHHHHHHH
Q 007526          331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV-AEYIKNCKSLLWINLYM-NDIGDEGAEKIA  408 (600)
Q Consensus       331 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l-~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~  408 (600)
                      ++++|++++|.++......    + ...++|++|++++|.+...    + +..+..++.++++.+.. |.+...    ..
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~----f-~~l~~L~~L~ls~n~~~~~----i~~~~f~~l~~l~~l~~~~~n~l~~~----~~   96 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGA----F-SGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKANNLLYI----NP   96 (242)
T ss_dssp             CCSEEEEESCCCCEECTTT----T-TTCTTCCEEEEESCTTCCE----ECSSSEESCTTCCEEEEECCTTCCEE----CT
T ss_pred             CCCEEECcCCcCCccChhH----h-hccchhhhhhhccccccce----eecccccccccccccccccccccccc----cc
Confidence            4555666655554321111    1 2233566666666655431    1 11234567777777654 455442    22


Q ss_pred             HHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCChhHHHHHHHHHhhCCCccEEeccCcCCChhHH
Q 007526          409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA  488 (600)
Q Consensus       409 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~  488 (600)
                      ..+..+++|++|++++|.++.....   ..+...+.+..+..+++.+.......+.   .....++.|++++|+++....
T Consensus        97 ~~~~~l~~L~~l~l~~~~l~~~~~~---~~~~~l~~l~~~~~~n~~l~~i~~~~~~---~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIERNSFV---GLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             TSEECCTTCCEEEEESCCCCSCCCC---TTTCBSSCEEEEEESCTTCCEECTTSST---TSBSSCEEEECCSSCCCEECT
T ss_pred             ccccccccccccccchhhhcccccc---cccccccccccccccccccccccccccc---cccccceeeeccccccccccc
Confidence            3456678899999998887653211   1122335555556666666543222221   112467888888888876544


Q ss_pred             HHHHHHHhhCCCccEE-EccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChhHH
Q 007526          489 EFVADMLRYNNTISIL-DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA  545 (600)
Q Consensus       489 ~~l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~~l~~~n~~L~~L~ls~n~i~~~~~  545 (600)
                      ..+     ..++++++ ++.+|.++......+..+     ++|++|++++|+|+....
T Consensus       171 ~~~-----~~~~l~~~~~l~~n~l~~l~~~~f~~l-----~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         171 CAF-----NGTQLDELNLSDNNNLEELPNDVFHGA-----SGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             TTT-----TTCCEEEEECTTCTTCCCCCTTTTTTS-----CCCSEEECTTSCCCCCCS
T ss_pred             ccc-----cchhhhccccccccccccccHHHhcCC-----CCCCEEECCCCcCCccCH
Confidence            332     23555555 456677776543333333     788888888888885443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.5e-08  Score=84.23  Aligned_cols=44  Identities=23%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCCh
Q 007526          384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS  429 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  429 (600)
                      ..+++|++|+|++|+|++..  .+...+..+++|+.|++++|.|++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~--~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCS--GGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             HhCCCCCEeeCCCccccCCc--hhHHHHhhCCcccccccccCcccc
Confidence            44555555666555555410  012223334555555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=3.3e-07  Score=79.13  Aligned_cols=86  Identities=19%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             CCcccEEECcCCCCChhhHHHHHHHHHhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChH---HHHH
Q 007526          358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK---GASA  434 (600)
Q Consensus       358 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---~~~~  434 (600)
                      .+.|++|+|++|.|+....  +...+..+++|+.|++++|.|++...  + ..+ ....|+.|++++|.+...   ....
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~--l-~~l-~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERE--L-DKI-KGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGG--H-HHH-TTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             CCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccCccccchh--h-hhh-hccccceeecCCCCcCcCcccchhH
Confidence            3467777777776664211  23445677778888888887776321  1 112 234577777777766531   2233


Q ss_pred             HHHHhhcCCCcCEEE
Q 007526          435 IARVLKDNSVITSLD  449 (600)
Q Consensus       435 l~~~l~~~~~L~~L~  449 (600)
                      ....+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence            344445556666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=3.7e-07  Score=78.20  Aligned_cols=63  Identities=16%  Similarity=0.159  Sum_probs=27.5

Q ss_pred             HhCCCCcEEEccCCCCChHHHHHHHHHhhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007526          384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI  455 (600)
Q Consensus       384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  455 (600)
                      .++++|+.|++++|+|+..    -..++..+++|++|+|++|+|+....     .......|++|+|++|++
T Consensus        53 ~~l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~Ls~N~l~~l~~-----~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          53 RGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALESLSW-----KTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCSCCCS-----TTTCSCCCCEEECCSSCC
T ss_pred             ccccccCcceeeccccCCc----ccccccccccccceeccCCCCcccCh-----hhhccccccccccCCCcc
Confidence            3444555555555544432    12233444555555555555443211     111123455555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-07  Score=80.17  Aligned_cols=18  Identities=22%  Similarity=0.248  Sum_probs=8.1

Q ss_pred             HHhCCCCcEEEccCCCCC
Q 007526          383 IKNCKSLLWINLYMNDIG  400 (600)
Q Consensus       383 l~~~~~L~~L~Ls~n~l~  400 (600)
                      +..+++|++|+|++|+|+
T Consensus        76 f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          76 FHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             GGSCSCCCEEECCSSCCS
T ss_pred             ccccccccceeccCCCCc
Confidence            334444444444444443