Citrus Sinensis ID: 007527

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600
MDTTKIQNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSAGESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVLEMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVHSVNSSDSISQTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQLVSRPHFQNHSQESSFASWKKGGLVSCKKQRDGVSQKLLKKILFEVPRIINYRLLESSEDNHIKDDVSRLEAEETATNHVKSERRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRAKLEANYDNSKTSRAKKRKSRDIYESEPEFERFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQMPHQLG
cccccccccccccHHHHHHHHHHHcccccEEEEEEEEcccccccEEEcccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEcEEEEcccccccccEEcccccEEEEcccccccHHHHHHcccEEEEEEEccccEEEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHcccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEccccEEEEEEEEEEccccccccc
ccccccccccccHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccccEEEHHHHEEEEcccccccccHHHccccEEEEEccccccccHHHHHHHcEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHcccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccEHHHHcccccccccccccccccccccEEccccccccccccccccHHHHHHHHHcccHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccHHHcc
mdttkiqnqkrvpESLKKQLALAVRSIQWSYAIFWTisdtqpgvlewgdgyyngdiktrKTIQSVELSSNQLGLQRSEQLRELYESLsagesnpqaaskrpsaalspedltdteWYYLVCMSFVFnigeglpgralannqpiwlcnaqyadskvFSRSLLAKTVVCFPHLHGVVELGVTElvleepgfiqhiktsfmeipcpmisgnsssgagnmrddkDLACAALCSqnldttmvPVVGYEVLemaspdnngssgikhnqpaddsfmVEGINGVASQVQSWQFmddefsncvhsvnssdSISQTLVDAAKcvsaskddkkiGHCLQeveecnpteltsldpqghdlhYQSVLSSLLKTshqlvsrphfqnhsqessfaswkkgglvsckkqRDGVSQKLLKKILFEVPRIINYRllessednhikddvsrLEAEETATNHVkserrqrgklNERFVILKSmvpsvskfdkvsiLDDTIEYVQELERKVKELESCRAKLEanydnsktsrakkrksrdiyesepeferfatadninvsinEKDVQieikcpwreGMLLEIMDAISnlhlyshrfnhppIEAFYLLLSKvstedqmphqlg
mdttkiqnqkrvpesLKKQLALAVRSIQWSYAIFWTisdtqpgvlEWGDGYYNGDIKTRKTIQSVELssnqlglqRSEQLRELYESLSagesnpqaaskrpsaalspEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVLEMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVHSVNSSDSISQTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQLVSRPHFqnhsqessfaswkkgglVSCKKQRDGVSQKLLKKILFEVPRIINyrllessednhikddvsrleaeetatnhvkserrqrgklnerfvilksmvpsvskfdkvsiLDDTIEYVQELERKVKELEscrakleanydnsktsrakkrksrdiyesepeferfatadninvsinekdvqiEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQMPHQLG
MDTTKIQNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSAGESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHlhgvvelgvtelvleePGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVLEMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVHSVNSSDSISQTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQLVSRPHFQNHSQESSFASWKKGGLVSCKKQRDGVSQKLLKKILFEVPRIINYRLLESSEDNHIKDDVSRLEAEETATNHVKSERRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRAKLEANYDNsktsrakkrksrDIYESEPEFERFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQMPHQLG
******************QLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTI************************************************TDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPCPMI***************DLACAALCSQNLDTTMVPVVGYEVLE*********************FMVEGINGVASQVQSWQFMDDEFSNCVHSVN******QTLVDAAKCV********IGHCLQEVE****************LHYQSVL***************************WKKGGLVSCKKQRDGVSQKLLKKILFEVPRIINYRLL************************************ERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKV**************************************RFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSK************
********************ALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGD******************************SL************RPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEI*************************************************************************************************************************************************************************************************************************************************************NERFVILKSMVPSVSKFDKVSILDDTIEYVQELE**************************************************VSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQM*****
*************ESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYE*********************PEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVLEMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVHSVNSSDSISQTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQLVS*****************************GVSQKLLKKILFEVPRIINYRLLESSEDNHIKD*********************RGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRAKLE*********************SEPEFERFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVST*********
**********RVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGD*****************GLQRSEQLRELYESLSA**************ALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPC********************************************************************************************HSVNSSDSISQTLVDAAKCVSA*****************************HDLHYQSVLSSLLKTS*************************************QKLLKKILFEVPRIIN********************************RRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQELERKVKELESCRA***********************************DNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQ******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDTTKIQNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSAGESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLEEPGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVLEMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVHSVNSSDSISQTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQLVSRPHFQNHSQESSFASWKKGGLVSCKKQRDGVSQKLLKKILFEVPRIINYRLLESSEDNHIKDDVSRLEAEETATNHVKSERRQRGKLNERFVILKSMVPSVSKFDKVSIxxxxxxxxxxxxxxxxxxxxxxxxxxxxYDNSKTSRAKKRKSRDIYESEPEFERFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSHRFNHPPIEAFYLLLSKVSTEDQMPHQLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query600 2.2.26 [Sep-21-2011]
Q9FN69637 Transcription factor GLAB yes no 0.908 0.855 0.486 1e-147
Q9CAD0596 Transcription factor EGL1 no no 0.868 0.874 0.472 1e-137
P13526610 Anthocyanin regulatory Lc N/A no 0.326 0.321 0.544 1e-62
P13027612 Anthocyanin regulatory R- N/A no 0.311 0.305 0.557 2e-62
Q8W2F1526 Transcription factor MYC1 no no 0.41 0.467 0.459 1e-57
Q9FT81518 Transcription factor TT8 no no 0.341 0.395 0.472 5e-49
Q39204623 Transcription factor MYC2 no no 0.306 0.295 0.308 5e-19
O49687589 Transcription factor MYC4 no no 0.263 0.268 0.322 3e-17
Q9LNJ5590 Transcription factor bHLH no no 0.271 0.276 0.346 1e-16
Q9FIP9592 Transcription factor ATR2 no no 0.271 0.275 0.313 2e-16
>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1 Back     alignment and function desciption
 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 298/613 (48%), Positives = 380/613 (61%), Gaps = 68/613 (11%)

Query: 7   QNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVE 66
           QN+  VPE+LKK LA++VR+IQWSY IFW++S +Q GVLEWGDGYYNGDIKTRKTIQ+ E
Sbjct: 5   QNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQSGVLEWGDGYYNGDIKTRKTIQASE 64

Query: 67  LSSNQLGLQRSEQLRELYE-------SLSAGESNPQAASKRPSAALSPEDLTDTEWYYLV 119
           + ++QLGL+RSEQL ELYE       S S   +  Q   +  +AALSPEDL DTEWYYLV
Sbjct: 65  IKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLV 124

Query: 120 CMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLA-----KTVVCFPHLHGVV 174
           CMSFVFNIGEG+PGR  AN +PIWLCNA  ADSKVFSRSLLA     KTVVCFP L GVV
Sbjct: 125 CMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVV 184

Query: 175 ELGVTELVLEEPGFIQHIKTSFMEIPCP---MISGNSSSGAGNMRDDKDLACAALCSQNL 231
           E+G TE + E+   IQ +KTSF+E P P   ++   S     N+ D + +          
Sbjct: 185 EIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARSDYHIDNVLDPQQILG-------- 236

Query: 232 DTTMVPVVGYEVLEMASPDNNGSSGI--KHNQPAD--DSFMVEGINGVASQVQSWQFMDD 287
           D    P+   E    ASP    ++G   +H Q AD  DSFM E I G ASQVQSWQ MDD
Sbjct: 237 DEIYAPMFSTEPFPTASPSRT-TNGFDQEHEQVADDHDSFMTERITGGASQVQSWQLMDD 295

Query: 288 EFSNCVH-SVNSSDSISQTLVD-AAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGH 345
           E SNCVH S+NSSD +SQT V+ AA  V+      ++    Q  E+    +  S DP+  
Sbjct: 296 ELSNCVHQSLNSSDCVSQTFVEGAAGRVAYGARKSRVQRLGQIQEQQRNVKTLSFDPRND 355

Query: 346 DLHYQSVLSSLLKTSHQLVSRPHFQNHSQESSFASWKKGGLVSCKKQR-DGVSQKLLKKI 404
           D+HYQSV+S++ KT+HQL+  P F+N  ++SSF  WKK    S         SQ +LKKI
Sbjct: 356 DVHYQSVISTIFKTNHQLILGPQFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQGMLKKI 415

Query: 405 LFEVPRIINYRLLESSEDNHIKDD--VSRLEAEETATNHVKSERRQRGKLNERFVILKSM 462
           +F+VPR+            H K+   +   EA +   NH   E+++R KLNERF+ L+ +
Sbjct: 416 IFDVPRV------------HQKEKLMLDSPEARDETGNHAVLEKKRREKLNERFMTLRKI 463

Query: 463 VPSVSKFDKVSILDDTIEYVQELERKVKELESCR----------------------AKLE 500
           +PS++K DKVSILDDTIEY+QELER+V+ELESCR                       +  
Sbjct: 464 IPSINKIDKVSILDDTIEYLQELERRVQELESCRESTDTETRGTMTMKRKKPCDAGERTS 523

Query: 501 ANYDNSKTSRAKKRKSRDIYESEPEFERF-ATADNINVSINEKDVQIEIKCPWREGMLLE 559
           AN  N++T   KK    ++ E+EP    F    DN+ +     +V IE++C WREG+LLE
Sbjct: 524 ANCANNETGNGKKVSVNNVGEAEPADTGFTGLTDNLRIGSFGNEVVIELRCAWREGVLLE 583

Query: 560 IMDAISNLHLYSH 572
           IMD IS+LHL SH
Sbjct: 584 IMDVISDLHLDSH 596
Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1 Back     alignment and function description
>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1 Back     alignment and function description
>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1 Back     alignment and function description
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query600
224071909629 predicted protein [Populus trichocarpa] 0.926 0.883 0.608 0.0
224058495629 predicted protein [Populus trichocarpa] 0.953 0.909 0.586 0.0
380006415620 DEL65 [Gossypium arboreum] 0.96 0.929 0.582 0.0
359474203633 PREDICTED: transcription factor GLABRA 3 0.955 0.905 0.572 0.0
13346182620 GHDEL65 [Gossypium hirsutum] 0.961 0.930 0.575 0.0
38490123629 myc-like anthocyanin regulatory protein 0.948 0.904 0.565 1e-178
38490127630 myc-like anthocyanin regulatory protein 0.95 0.904 0.546 1e-177
46254731624 myc-like anthocyanin regulatory protein 0.948 0.911 0.557 1e-176
46254733624 myc-like anthocyanin regulatory protein 0.948 0.911 0.558 1e-176
38490131630 myc-like anthocyanin regulatory protein 0.928 0.884 0.554 1e-176
>gi|224071909|ref|XP_002303592.1| predicted protein [Populus trichocarpa] gi|222841024|gb|EEE78571.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/593 (60%), Positives = 435/593 (73%), Gaps = 37/593 (6%)

Query: 5   KIQNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQS 64
           +++NQ+R+P++LKKQLALAVRSIQWSYAIFW+    QPGVLEW DGYYNGDIKTRKT+QS
Sbjct: 4   ELRNQERLPDNLKKQLALAVRSIQWSYAIFWSNPTGQPGVLEWADGYYNGDIKTRKTVQS 63

Query: 65  VELSSNQLGLQRSEQLRELYESLSAGESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFV 124
           +EL++++LGLQRSEQLRELYESLSAGE+NPQA  +RPSAALSPEDLTDTEWYYLVCMSFV
Sbjct: 64  IELNADELGLQRSEQLRELYESLSAGEANPQA--RRPSAALSPEDLTDTEWYYLVCMSFV 121

Query: 125 FNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAKTVVCFPHLHGVVELGVTELVLE 184
           F+ G+GLPG  LAN  P WLCNA  ADSK+FSRSLLAKTVVCFP + GVVELGV+E VLE
Sbjct: 122 FDNGQGLPGTTLANGHPTWLCNAPSADSKIFSRSLLAKTVVCFPFMRGVVELGVSEQVLE 181

Query: 185 EPGFIQHIKTSFMEIPCPMISGNSSSGAGNMRDDKDLACAALCSQNLDTTMVPVVGYEVL 244
           +P  IQHIKTSF+EIP  + + +SS+     + DK+LACA    +  DT  VPV+    L
Sbjct: 182 DPSLIQHIKTSFLEIPYTVTANHSSA-----KSDKELACATFNREIHDTKPVPVIRCREL 236

Query: 245 EMASPDNNGSSGIKHNQPADDSFMVEGINGVASQVQSWQFMDDEFSNCVH-SVNSSDSIS 303
           +  SPD+N      ++Q A DS MVEG+NG ASQVQSWQFMDD+FSN VH  +NSSDS+S
Sbjct: 237 DTLSPDDNS-----NDQAATDSIMVEGLNGGASQVQSWQFMDDDFSNRVHHPLNSSDSVS 291

Query: 304 QTLVDAAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGHDLHYQSVLSSLLKTSHQL 363
           QT+VD    V   KD K  G  LQ++++CN  +LT+L+ Q  DLHYQSVLS LLKTSH L
Sbjct: 292 QTIVDPVMLVPFLKDGKVNGQSLQDIQDCNHKKLTALNLQSDDLHYQSVLSCLLKTSHPL 351

Query: 364 VSRPHFQNHSQESSFASWKKGGLVSCKKQRDGVSQKLLKKILFEVPRIINYRLLESSEDN 423
           +  P+ QN  QE SF SWKK GL+  +K + G  QKLLKKILFEVPR+    LL+S E +
Sbjct: 352 ILGPNVQNCYQEPSFVSWKKAGLMHSQKLKSGTPQKLLKKILFEVPRMHVDGLLDSPEYS 411

Query: 424 HIKDDVSRLEAEETATNHVKSERRQRGKLNERFVILKSMVPSVSKFDKVSILDDTIEYVQ 483
             K    R EA+E   +HV SERR+R KLN+RF+ILKS+VPS+SK DKVSILDDTI+Y+Q
Sbjct: 412 SDKVVGGRPEADEIGASHVLSERRRREKLNKRFMILKSIVPSISKVDKVSILDDTIQYLQ 471

Query: 484 ELERKVKELESCRAKLEA--------------------NYDNSKTSRAKKRKSRDIYESE 523
           ELERKV+ELE  R  LEA                       N K S   KRK+ DI E E
Sbjct: 472 ELERKVEELECRRELLEAITKRKPEDTVERTSDNCGSNKIGNGKNSLTNKRKAPDIDEME 531

Query: 524 PE----FERFATADNINVSINEKDVQIEIKCPWREGMLLEIMDAISNLHLYSH 572
           P+      +  +AD+I VS+N+ DV IEIKC WREG+LLEIMDA S+LHL SH
Sbjct: 532 PDTNHNISKDGSADDITVSMNKGDVVIEIKCLWREGILLEIMDAASHLHLDSH 584

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058495|ref|XP_002299530.1| predicted protein [Populus trichocarpa] gi|222846788|gb|EEE84335.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|380006415|gb|AFD29598.1| DEL65 [Gossypium arboreum] Back     alignment and taxonomy information
>gi|359474203|ref|XP_002270239.2| PREDICTED: transcription factor GLABRA 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|13346182|gb|AAK19613.1|AF336280_1 GHDEL65 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|38490123|gb|AAR21671.1| myc-like anthocyanin regulatory protein [Cornus capitata] Back     alignment and taxonomy information
>gi|38490127|gb|AAR21673.1| myc-like anthocyanin regulatory protein [Cornus chinensis] Back     alignment and taxonomy information
>gi|46254731|gb|AAS86298.1| myc-like anthocyanin regulatory protein [Cornus unalaschkensis] Back     alignment and taxonomy information
>gi|46254733|gb|AAS86299.1| myc-like anthocyanin regulatory protein [Cornus unalaschkensis] Back     alignment and taxonomy information
>gi|38490131|gb|AAR21675.1| myc-like anthocyanin regulatory protein [Cornus eydeana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query600
TAIR|locus:504954829637 GL3 "AT5G41315" [Arabidopsis t 0.785 0.739 0.509 4.2e-118
TAIR|locus:2026629596 EGL3 "AT1G63650" [Arabidopsis 0.883 0.889 0.419 8.4e-97
UNIPROTKB|Q7XPS7567 OSJNBa0065O17.4 "OSJNBa0065O17 0.245 0.259 0.637 4.2e-71
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.36 0.416 0.412 5.1e-68
UNIPROTKB|Q948Y2451 Plw-OSB2 "R-type basic helix-l 0.39 0.518 0.431 3.3e-65
TAIR|locus:2127023580 ATMYC1 [Arabidopsis thaliana ( 0.476 0.493 0.386 1e-45
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.255 0.258 0.3 8.6e-27
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.243 0.208 0.365 3.8e-25
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.48 0.508 0.246 7.3e-25
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.255 0.259 0.301 2.7e-24
TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
 Identities = 261/512 (50%), Positives = 328/512 (64%)

Query:     7 QNQKRVPESLKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVE 66
             QN+  VPE+LKK LA++VR+IQWSY IFW++S +Q GVLEWGDGYYNGDIKTRKTIQ+ E
Sbjct:     5 QNRTTVPENLKKHLAVSVRNIQWSYGIFWSVSASQSGVLEWGDGYYNGDIKTRKTIQASE 64

Query:    67 LSSNQLGLQRSEQLRELYESLSAGESNPQ--AA----SKRPSAA-LSPEDLTDTEWYYLV 119
             + ++QLGL+RSEQL ELYESLS  ES+    AA    ++R SAA LSPEDL DTEWYYLV
Sbjct:    65 IKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLV 124

Query:   120 CMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAK-----TVVCFPHXXXXX 174
             CMSFVFNIGEG+PGR  AN +PIWLCNA  ADSKVFSRSLLAK     TVVCFP      
Sbjct:   125 CMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVV 184

Query:   175 XXXXXXXXXXXPGFIQHIKTSFMEIPCP---MISGNSSSGAGNMRDDKDLACAALCSQNL 231
                           IQ +KTSF+E P P   ++   S     N+ D + +          
Sbjct:   185 EIGTTEHITEDMNVIQCVKTSFLEAPDPYATILPARSDYHIDNVLDPQQILG-------- 236

Query:   232 DTTMVPVVGYEVLEMASPDNNGSSGI--KHNQPADD--SFMVEGINGVASQVQSWQFMDD 287
             D    P+   E    ASP    ++G   +H Q ADD  SFM E I G ASQVQSWQ MDD
Sbjct:   237 DEIYAPMFSTEPFPTASPSRT-TNGFDQEHEQVADDHDSFMTERITGGASQVQSWQLMDD 295

Query:   288 EFSNCVH-SVNSSDSISQTLVD-AAKCVSASKDDKKIGHCLQEVEECNPTELTSLDPQGH 345
             E SNCVH S+NSSD +SQT V+ AA  V+      ++    Q  E+    +  S DP+  
Sbjct:   296 ELSNCVHQSLNSSDCVSQTFVEGAAGRVAYGARKSRVQRLGQIQEQQRNVKTLSFDPRND 355

Query:   346 DLHYQSVLSSLLKTSHQLVSRPHFQNHSQESSFASWKKGGLVSCKKQR-DGVSQKLLKKI 404
             D+HYQSV+S++ KT+HQL+  P F+N  ++SSF  WKK    S         SQ +LKKI
Sbjct:   356 DVHYQSVISTIFKTNHQLILGPQFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQGMLKKI 415

Query:   405 LFEVPRIINYRLLESSEDNHIKDDVSRLEAEETATNHVKSERRQRGKLNERFVILKSMVP 464
             +F+VPR+         ++  + D     EA +   NH   E+++R KLNERF+ L+ ++P
Sbjct:   416 IFDVPRV-------HQKEKLMLDSP---EARDETGNHAVLEKKRREKLNERFMTLRKIIP 465

Query:   465 SVSKFDKVSILDDTIEYVQELERKVKELESCR 496
             S++K DKVSILDDTIEY+QELER+V+ELESCR
Sbjct:   466 SINKIDKVSILDDTIEYLQELERRVQELESCR 497
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0010091 "trichome branching" evidence=IMP
GO:0001708 "cell fate specification" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009957 "epidermal cell fate specification" evidence=IMP
TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XPS7 OSJNBa0065O17.4 "OSJNBa0065O17.4 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q948Y2 Plw-OSB2 "R-type basic helix-loop-helix protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2127023 ATMYC1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FN69GL3_ARATHNo assigned EC number0.48610.90830.8555yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III1049
hypothetical protein (630 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query600
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 3e-84
smart0035353 smart00353, HLH, helix loop helix domain 4e-10
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 8e-10
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 4e-08
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  260 bits (666), Expect = 3e-84
 Identities = 99/186 (53%), Positives = 119/186 (63%), Gaps = 20/186 (10%)

Query: 16  LKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQ 75
           L+++L   V S QWSYAIFW +S  Q GVL WGDGYYNG+IKTRKT       + +LGLQ
Sbjct: 1   LQQRLQALVESEQWSYAIFWQLSPDQSGVLGWGDGYYNGEIKTRKT------VAEELGLQ 54

Query: 76  RSEQLRELYESLSAGESNPQAASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRA 135
           R + LRELY  LS           R +AALSPEDLTDTEW+YLV M+F F  GEGLPG+A
Sbjct: 55  RKKVLRELYSLLSG---------SRDAAALSPEDLTDTEWFYLVSMTFSFPPGEGLPGKA 105

Query: 136 LANNQPIWLCNAQYADSKVFSRSLLAK-----TVVCFPHLHGVVELGVTELVLEEPGFIQ 190
            A+   IWL  A   DS   SRS LA+     T+VC P   GVVELG TE + E+   +Q
Sbjct: 106 FASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPEDLNLVQ 165

Query: 191 HIKTSF 196
           H+K+ F
Sbjct: 166 HVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 600
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.24
smart0035353 HLH helix loop helix domain. 99.2
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.18
KOG1318411 consensus Helix loop helix transcription factor EB 98.67
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.35
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.16
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.94
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.72
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.69
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.65
KOG0561 373 consensus bHLH transcription factor [Transcription 97.38
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 97.36
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 97.27
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 97.21
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 96.98
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 96.85
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 96.8
KOG4029228 consensus Transcription factor HAND2/Transcription 96.75
PLN0321793 transcription factor ATBS1; Provisional 96.73
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 96.34
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 96.18
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.71
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 95.44
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 95.35
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 95.2
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 94.75
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 94.74
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 94.18
PRK0019490 hypothetical protein; Validated 93.83
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 93.79
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 93.65
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 93.47
PRK05007884 PII uridylyl-transferase; Provisional 93.3
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 93.05
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 93.01
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 92.15
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 91.76
PRK00275895 glnD PII uridylyl-transferase; Provisional 91.53
PRK01759854 glnD PII uridylyl-transferase; Provisional 91.52
PRK03381774 PII uridylyl-transferase; Provisional 91.38
KOG3910632 consensus Helix loop helix transcription factor [T 91.3
PRK04374869 PII uridylyl-transferase; Provisional 91.23
PRK04435147 hypothetical protein; Provisional 90.86
KOG4447173 consensus Transcription factor TWIST [Transcriptio 90.82
PRK05092931 PII uridylyl-transferase; Provisional 90.17
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 89.56
cd0211660 ACT ACT domains are commonly involved in specifica 89.27
PRK03059856 PII uridylyl-transferase; Provisional 89.23
PRK03381 774 PII uridylyl-transferase; Provisional 88.21
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 88.13
PRK01759 854 glnD PII uridylyl-transferase; Provisional 88.09
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 87.93
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 87.76
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 87.34
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 87.33
PRK00275 895 glnD PII uridylyl-transferase; Provisional 87.29
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 87.0
PRK03059 856 PII uridylyl-transferase; Provisional 86.7
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 86.55
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 86.45
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 86.38
PRK05007 884 PII uridylyl-transferase; Provisional 86.1
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 85.26
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 84.45
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 83.83
PRK05092 931 PII uridylyl-transferase; Provisional 83.58
PRK08577136 hypothetical protein; Provisional 83.51
PRK07334403 threonine dehydratase; Provisional 83.04
KOG3898254 consensus Transcription factor NeuroD and related 82.91
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 81.3
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 80.62
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=2.4e-51  Score=392.38  Aligned_cols=158  Identities=51%  Similarity=0.876  Sum_probs=145.9

Q ss_pred             HHHHHHHhhcCCCcEEEEEeecCCCCCccEEEccccccCCccccccccccccChhhhhhhhHHHHHHHHhhhccCCCCcc
Q 007527           16 LKKQLALAVRSIQWSYAIFWTISDTQPGVLEWGDGYYNGDIKTRKTIQSVELSSNQLGLQRSEQLRELYESLSAGESNPQ   95 (600)
Q Consensus        16 Lq~~L~~~~~~~~WtYAIFWq~s~~~~gvL~WgDGy~~g~~k~~k~~~~~e~~~~~~~~~r~~~lreL~~sl~~g~~~~~   95 (600)
                      ||++|+.+|.+.+|+||||||+++++ .+|+||||||+|++++++..       ++.+++|+++||+||.++.       
T Consensus         1 Lq~~Lr~lv~~~~W~YaVFWk~~~~~-~~L~W~DG~~~g~~~~~~~~-------~~~~~~~~~~l~~l~~~~~-------   65 (163)
T PF14215_consen    1 LQQRLRSLVENSQWTYAVFWKLSPDN-SVLVWGDGYCNGPKETRKNG-------EEEQEQRSKVLRELHSSFS-------   65 (163)
T ss_pred             ChHHHHHHhCCCCCcEEEEeEEcCCC-CeeeEcceeecCCcccccch-------hhccchhhhHHHHHhhhcc-------
Confidence            79999999999999999999999887 59999999999998877544       1445899999999996553       


Q ss_pred             cccCCCCcCCCCCCcCcceeeeeEeeeeeecCCCCccceeecCCCcEeeeCCCCCCCCCcccccCCc-----eEEEEeeC
Q 007527           96 AASKRPSAALSPEDLTDTEWYYLVCMSFVFNIGEGLPGRALANNQPIWLCNAQYADSKVFSRSLLAK-----TVVCFPHL  170 (600)
Q Consensus        96 ~~~~~~~~al~~e~~td~Ewfyl~~ms~~f~~G~GlpG~a~~~g~~~Wl~~~~~~~~~~~~R~~lak-----TvvciP~~  170 (600)
                            ..++.+++|+|+||||++||+|+|  |+|+|||||++|+|+||++++.++.+.|+|+++||     ||||||+.
T Consensus        66 ------~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv~IPv~  137 (163)
T PF14215_consen   66 ------SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIVCIPVP  137 (163)
T ss_pred             ------ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEEEEEec
Confidence                  144679999999999999999999  99999999999999999999999999999999999     99999999


Q ss_pred             CceEeecccceeccChhHHHHHHHHh
Q 007527          171 HGVVELGVTELVLEEPGFIQHIKTSF  196 (600)
Q Consensus       171 ~GVvELGSt~~I~Ed~~lv~~vk~~F  196 (600)
                      +||||||||++|+||++||++||++|
T Consensus       138 ~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  138 NGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             CCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            99999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query600
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 5e-16
1hlo_A80 Protein (transcription factor MAX); transcriptiona 6e-15
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 3e-13
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 6e-13
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 1e-09
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 1e-04
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
 Score = 72.4 bits (178), Expect = 5e-16
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 439 TNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRA 497
           T H   E+R R  +N++ + LK +V    +K +K ++L   I+Y++ L+   ++L+    
Sbjct: 8   TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENL 67

Query: 498 KLEA 501
            L  
Sbjct: 68  SLRT 71
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query600
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.6
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.48
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.48
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.47
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.43
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.4
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.39
4ati_A118 MITF, microphthalmia-associated transcription fact 99.38
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.32
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.32
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.27
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 99.1
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 98.97
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.73
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.56
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.41
4ath_A83 MITF, microphthalmia-associated transcription fact 98.19
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.76
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 95.89
2nyi_A 195 Unknown protein; protein structure initiative, PSI 94.15
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 93.91
1u8s_A 192 Glycine cleavage system transcriptional repressor, 93.79
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 93.1
2nyi_A195 Unknown protein; protein structure initiative, PSI 91.26
1vhm_A195 Protein YEBR; structural genomics, unknown functio 91.04
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 90.98
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 89.61
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 88.07
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 86.87
1u8s_A192 Glycine cleavage system transcriptional repressor, 86.8
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 85.04
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 84.94
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 82.8
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 81.81
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 80.36
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 80.19
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.60  E-value=1e-15  Score=129.89  Aligned_cols=66  Identities=27%  Similarity=0.477  Sum_probs=62.5

Q ss_pred             hhhccchhHHHHHHHHHHHHHHHHhhccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527          435 EETATNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKLE  500 (600)
Q Consensus       435 ~~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~  500 (600)
                      ...+.+|+.+||+||++||+.|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+++.|.
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~   70 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999998 9999999999999999999999999999998876
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 600
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 6e-14
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 1e-12
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 2e-12
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 4e-12
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 6e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 3e-11
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 4e-11
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 2e-10
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 6e-14
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 449 RGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKLEANYDNSK 507
           R  +N++ + LK +V    +K  K  +L   I+Y++ L++   +L      L+     +K
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLKLANQKNK 60
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query600
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.46
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.4
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.39
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.38
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.25
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 95.9
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 94.79
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 93.42
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 91.9
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 91.41
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 90.77
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 89.06
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 84.12
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 84.0
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-14  Score=119.47  Aligned_cols=65  Identities=28%  Similarity=0.489  Sum_probs=60.7

Q ss_pred             hhccchhHHHHHHHHHHHHHHHHhhccCCCC-CCCChhchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007527          436 ETATNHVKSERRQRGKLNERFVILKSMVPSV-SKFDKVSILDDTIEYVQELERKVKELESCRAKLE  500 (600)
Q Consensus       436 ~~~~~h~~~ER~RR~kin~~f~~LrslvP~~-~K~dKasIL~daI~YIk~Lq~~v~~Le~~~~~l~  500 (600)
                      ..+.+|+.+||+||++||+.|..|++|||+. .|++|++||..||+||+.|+++++.|+.++..+.
T Consensus         5 ~kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk   70 (80)
T d1am9a_           5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR   70 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477899999999999999999999999986 7999999999999999999999999999988765
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure