Citrus Sinensis ID: 007543
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYT2 | 583 | Pentatricopeptide repeat- | yes | no | 0.933 | 0.958 | 0.695 | 0.0 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.669 | 0.489 | 0.264 | 1e-44 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.657 | 0.479 | 0.254 | 1e-41 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.580 | 0.379 | 0.282 | 4e-41 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.686 | 0.579 | 0.254 | 6e-41 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.739 | 0.593 | 0.253 | 3e-40 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.674 | 0.657 | 0.242 | 4e-40 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.570 | 0.351 | 0.272 | 5e-40 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.721 | 0.685 | 0.240 | 1e-39 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.590 | 0.591 | 0.269 | 6e-39 |
| >sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/569 (69%), Positives = 464/569 (81%), Gaps = 10/569 (1%)
Query: 1 MPQTLFLKPFISPSSINFSQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEV 60
M Q + KPF+S S N SQ+ + + ++ K+ R V+CMGMLAPRKF+QKRRK+EV
Sbjct: 1 MSQAVIFKPFVSVPSSNHSQRKLQNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKMEV 60
Query: 61 FKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWN 119
FKDAADE +K WR LM +IE GSAV VLR +T G Q LP+DLVLGTLVR KQLKKWN
Sbjct: 61 FKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWN 120
Query: 120 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL 179
+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VLS ++K G P+V+S+TAL
Sbjct: 121 LVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTAL 180
Query: 180 MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK 239
ME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE +KFKEAEEVF TLLDE+K
Sbjct: 181 MESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKK 240
Query: 240 SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299
SPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QSTVTYNSLMSFET+YKEVSK
Sbjct: 241 SPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK 300
Query: 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359
IYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLDAGVRPTHKAYNILLDAFA
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419
ISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEGAEKFF+R+K DGF PN++
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479
TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMDA G+ K+F SA+ WYKEM
Sbjct: 421 TYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEM 480
Query: 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDD 539
ESCG PPDQKAKN+LLSLA T DE EA EL G N + + DDD
Sbjct: 481 ESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNET---------ATIIARVYGSDDD 531
Query: 540 DEDDDDNIYHDGDGDGDGDDNEDDAEETI 568
+E +D D + +GDD++DDA ET+
Sbjct: 532 EEGVEDISSESSDDEDEGDDDDDDARETV 560
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 207/428 (48%), Gaps = 27/428 (6%)
Query: 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEM----DFLMLITAYGKQGDFNKAEKV 160
+L L L KK+++ +W Q D+ M ++I+ GK+G + A +
Sbjct: 138 LLAFLKGLGFHKKFDLALRAFDWFMKQK--DYQSMLDNSVVAIIISMLGKEGRVSSAANM 195
Query: 161 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220
+ + + G++ V S+T+L+ A+ GRY+ A +F++M+ G +P+ +TY +IL +F
Sbjct: 196 FNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF-- 253
Query: 221 ANKFKEAEEVFMTLLDEEKS-PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 279
K +L+++ KS + PD ++ +I K+ +++A ++F M G
Sbjct: 254 -GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY 312
Query: 280 STVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336
VTYN+L+ KE K+ ++M G P +V+Y LI+AY + +EA+ +
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396
+M + G +P Y LL F +G V+ A ++F+ MR C P+IC++ + Y N
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432
Query: 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF 456
K F + G P+++T+ TL+ + + ++ ++ +M+ G P + F
Sbjct: 433 GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Query: 457 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS--------------LAKTAD 502
T++ AY + F+ A+ Y+ M G PD N +L+ LA+ D
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552
Query: 503 ERNEANEL 510
R + NEL
Sbjct: 553 GRCKPNEL 560
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (433), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 188/412 (45%), Gaps = 18/412 (4%)
Query: 129 RIQSW-WDFNEMDFLM-------------LITAYGKQGDFNKAEKVLSFMNKKGYAPSVV 174
R W W N MD ++ LI A G G++ +A +V M G P +V
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLV 249
Query: 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 234
+H ++ AY G +Y A + F M+ + RP T+ II+ + + +A ++F ++
Sbjct: 250 THNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSM 309
Query: 235 LDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM---SFE 291
E+++ +PD F ++++Y G E R +F M G++ + V+YN+LM +
Sbjct: 310 -REKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVH 368
Query: 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351
+ +++ G+ PDVVSY L+N+YG++R+ +A VF M +P Y
Sbjct: 369 GMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTY 428
Query: 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411
N L+DA+ +G + +A +F+ M +D P++ S T+L+A + + +
Sbjct: 429 NALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 488
Query: 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471
G N Y + I Y LEK + +Y MR +K + FT ++ + +
Sbjct: 489 RGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPE 548
Query: 472 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 523
A+ + KEME P ++ + +L + EA + EP +
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDV 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 187/357 (52%), Gaps = 9/357 (2%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
+I+ G+ G A+++ GY +V + +AL+ AYGR G ++ A ++F M+ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 204 PRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGG 261
RP+ +TY ++ + +FK+ + F DE +++ ++PD+ F+ ++ + + G
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFF----DEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS---KIYDQMQRAGLQPDVVSYAL 318
+E AR LF M R ++Q +YN+L+ ++ +I QM + P+VVSY+
Sbjct: 355 WEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414
Query: 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378
+I+ + KA R +EAL +F EM G+ +YN LL + G ++A + + M
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 438
D+ +Y +L Y + +K F +K++ +PN++TY TLI GY+K ++ M
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 439 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495
EI+ + + G++ + +++ ++DA KN SAV EM G P+ N ++
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 208/425 (48%), Gaps = 14/425 (3%)
Query: 78 NQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 137
N IE+ + +A +R + + + LV+ +L R ++ ++ E R D
Sbjct: 211 NDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIER-----DKL 265
Query: 138 EMDFLM---LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194
E+D + +I + K GD +KA ++L G + + +++ A GR AEA
Sbjct: 266 ELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEA 325
Query: 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254
+F ++ SG +P Y +LK +V+ K+AE + + EK + PD+ + ++I
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM---EKRGVSPDEHTYSLLID 382
Query: 255 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQP 311
Y AG +E AR + M VQ ++ ++ L++ +++ ++ +M+ G++P
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371
D Y ++I+ +GK + A+ F+ ML G+ P +N L+D G A +F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431
+ M R C P +Y M+++Y + + ++ ++K G +PNV+T+ TL+ Y K
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491
+E ++M+ G+KP+ T++ +++AY + + AV ++ M S G P A
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 492 NILLS 496
N L++
Sbjct: 623 NSLIN 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 218/457 (47%), Gaps = 14/457 (3%)
Query: 71 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW--NVVSEVLEWL 128
K++ RL + I++ S V + ++ L + VL +R K+ + NV E+LE
Sbjct: 142 KSYSRL-SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ 200
Query: 129 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188
+ + +N +LI + G+ + A + M KG P+VV++ L++ Y + +
Sbjct: 201 VSPNVFTYN-----ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 248
+ + R M G P+ ++Y +++ + KE V L + + D+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE---VSFVLTEMNRRGYSLDEVT 312
Query: 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---MSFETNYKEVSKIYDQMQ 305
++ +I Y K G + +A + A M G+ S +TY SL M N + DQM+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 306 RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 365
GL P+ +Y L++ + + EA V EM D G P+ YN L++ ++G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 366 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425
A V + M+ SPD+ SY+T+LS + + D++ A + R + + G P+ ITY +LI
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485
+G+ + ++ ++Y++M G+ P++ +T +++AY D + A+ + EM G
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 486 PDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPG 522
PD ++L++ EA LL + + P
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 206/441 (46%), Gaps = 37/441 (8%)
Query: 90 LRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAY 148
L E + +P P + L+ + ++KK+++V E + I N + ++I
Sbjct: 52 LFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGV-SHNLYTYNIMINCL 110
Query: 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208
++ + A +L M K GY PS+V+ +L+ + G R A A+ +M G +P
Sbjct: 111 CRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170
Query: 209 LTYQIILKLFVEANKFKEA-------------------------------EEVFMTLLDE 237
+T+ ++ + NK EA ++ + LL++
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230
Query: 238 -EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNY-- 294
EK ++ D ++ +I K + A LF M +G++ TY+SL+S NY
Sbjct: 231 MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 290
Query: 295 -KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 353
+ S++ M + P+VV++ LI+A+ K + EA +F+EM+ + P YN
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 350
Query: 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413
L++ F + +D+A+ +F M C PD+ +Y T+++ + A + + FR + + G
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG 410
Query: 414 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473
V N +TY TLI G+ + ++ + ++ +M +G+ PN + T++D KN + A+
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470
Query: 474 VWYKEMESCGFPPDQKAKNIL 494
V ++ ++ PD NI+
Sbjct: 471 VVFEYLQKSKMEPDIYTYNIM 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 172/348 (49%), Gaps = 6/348 (1%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
LI Y ++ + + ++L M K+ S ++ +++ G A I + M +SG
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 263
RP+ + Y ++K F++ ++F +A V L + ++ + PD ++ +I KA +
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504
Query: 264 KARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLI 320
+AR M E G++ + TY + +S + + K +M+ G+ P+ V LI
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380
N Y K + EA + + M+D G+ K Y +L++ + VD A +F+ MR +
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIA 624
Query: 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440
PD+ SY +++ + +M+ A F + ++G PNVI Y L+ G+ + +EK E+
Sbjct: 625 PDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKEL 684
Query: 441 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488
D+M V G+ PN + TI+D Y K+ D A + EM+ G PD
Sbjct: 685 LDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDS 732
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 220/478 (46%), Gaps = 46/478 (9%)
Query: 86 AVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLML 144
AVA L E + +P P + L+ + ++ K++VV + E ++ N + +L
Sbjct: 65 AVA-LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSIL 122
Query: 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 204
I + ++ A VL M K GY P++V+ ++L+ Y R A A+ +M +G
Sbjct: 123 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182
Query: 205 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDE--------------------------- 237
+P+ +T+ ++ NK EA M L+D
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEA----MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238
Query: 238 ---------EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288
E+ L+P +++ +I K + A LF M +G++ + VTY+SL+
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 289 SFETNY---KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345
S NY + S++ M + PDV +++ LI+A+ K + EA +++EM+ +
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405
P+ Y+ L++ F + +D+A+ +F+ M C PD+ +Y T++ + +E +
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 406 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 465
FR + Q G V N +TY LI+G + + + EI+ +M +G+ PN + T++D K
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 466 NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 523
N + A+V ++ ++ P NI++ A + + +L N + +P +
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 39/393 (9%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
LI + + G KA K+L + G P V+++ ++ Y + G NA ++ RM S
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS- 201
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVF-------------------------------M 232
P +TY IL+ ++ K K+A EV M
Sbjct: 202 --PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 233 TLLDEEKS-PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---M 288
LLDE + PD +++++ K G ++A K M G Q + +T+N + M
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348
+ + K+ M R G P VV++ +LIN + A+ + E+M G +P
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379
Query: 349 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408
+YN LL F +D+A + M C PDI +Y TML+A +E A + +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439
Query: 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468
L G P +ITY T+I G AK K +++ D+MR +KP+ +++++ +
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499
Query: 469 FDSAVVWYKEMESCGFPPDQKAKN-ILLSLAKT 500
D A+ ++ E E G P+ N I+L L K+
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| 449463623 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.854 | 0.882 | 0.787 | 0.0 | |
| 224054488 | 575 | predicted protein [Populus trichocarpa] | 0.951 | 0.991 | 0.737 | 0.0 | |
| 255583688 | 553 | pentatricopeptide repeat-containing prot | 0.856 | 0.927 | 0.776 | 0.0 | |
| 225446761 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.803 | 0.877 | 0.789 | 0.0 | |
| 297820746 | 582 | pentatricopeptide repeat-containing prot | 0.854 | 0.879 | 0.744 | 0.0 | |
| 30694913 | 583 | pentatricopeptide repeat-containing prot | 0.933 | 0.958 | 0.695 | 0.0 | |
| 356536414 | 553 | PREDICTED: pentatricopeptide repeat-cont | 0.879 | 0.952 | 0.716 | 0.0 | |
| 356575428 | 562 | PREDICTED: pentatricopeptide repeat-cont | 0.861 | 0.918 | 0.724 | 0.0 | |
| 42572723 | 590 | pentatricopeptide repeat-containing prot | 0.903 | 0.916 | 0.704 | 0.0 | |
| 357444885 | 553 | Pentatricopeptide repeat-containing prot | 0.859 | 0.931 | 0.717 | 0.0 |
| >gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/512 (78%), Positives = 457/512 (89%)
Query: 1 MPQTLFLKPFISPSSINFSQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEV 60
MPQTL LKP +S N+S+ + +N V R++ V CMGML PRKF+QKR+K+EV
Sbjct: 1 MPQTLILKPVVSAPLPNWSKLQAQTHSISSNVNVRRKLVVTCMGMLTPRKFLQKRKKLEV 60
Query: 61 FKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNV 120
FKD ADEA +KNWRRLMN+IEE GSAV+VLRSER + + +PKDLVLGTLVR KQLKKWN+
Sbjct: 61 FKDEADEAEQKNWRRLMNEIEETGSAVSVLRSERIKNEAIPKDLVLGTLVRFKQLKKWNL 120
Query: 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 180
VSE+LEWLR QSWW+F+EMDF+MLITAYGK GDFN+AEKVL+ MNKKGYAP+VVSHTALM
Sbjct: 121 VSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALM 180
Query: 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS 240
EAYGRG RY NAEAIFRRMQS GP PSALTYQI+LK FVE +KFKEAEE+F +LL++EK
Sbjct: 181 EAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKP 240
Query: 241 PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300
LKPDQKMFHM+IYM+KKAG YEKARK+FA MA RGV Q+TVTYNSLMSFETNYKEVSKI
Sbjct: 241 VLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTVTYNSLMSFETNYKEVSKI 300
Query: 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360
YDQMQRAGLQPDVVSYALLI+AYGKARREEEALAVFEEMLDAG+RPTHKAYNILLDAFAI
Sbjct: 301 YDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAI 360
Query: 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420
SGMV+QA+ VFK M+RDRCSPDICSYTTMLSAYVNASDMEGAE FFRRLKQDGF PNV+T
Sbjct: 361 SGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVT 420
Query: 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480
YGTLIKGYAK+NNLEKM++ Y++M+VNGI+ NQTI TTIMDAYGKNKDF SAV+W+ E+E
Sbjct: 421 YGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNKDFGSAVIWFNEIE 480
Query: 481 SCGFPPDQKAKNILLSLAKTADERNEANELLG 512
SCG PDQKAKNILLSLAKTA+E +EAN+L+G
Sbjct: 481 SCGLRPDQKAKNILLSLAKTAEELDEANQLVG 512
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/576 (73%), Positives = 489/576 (84%), Gaps = 6/576 (1%)
Query: 26 SPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGS 85
+P AN K+HRR+ V+ MGML+PRKF+QKRRKVEVFKDA+DEA +KNWRRLM QIE+ GS
Sbjct: 4 NPFIANIKIHRRLEVVSMGMLSPRKFLQKRRKVEVFKDASDEADQKNWRRLMKQIEDTGS 63
Query: 86 AVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLI 145
AV+VLR ER + LP+DLVLGTLVR KQLKKW++VSE+LEWL+ Q WWDFNEMDFLMLI
Sbjct: 64 AVSVLRRERIKKDGLPRDLVLGTLVRFKQLKKWDLVSEILEWLQSQHWWDFNEMDFLMLI 123
Query: 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 205
TAYGK GDFN AE VL MN GY P+VVSHTALMEAYGRGGRY NAEAIFRRMQ+SGP
Sbjct: 124 TAYGKLGDFNGAEMVLRSMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPE 183
Query: 206 PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265
PSALTYQIILK FVE NKFKEAEEVF TLL++E SPL+PDQKMFHMMIYM KKAG YEKA
Sbjct: 184 PSALTYQIILKTFVEGNKFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKA 243
Query: 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325
RK+FALMAERGV QSTVTYNSLMSFETNYKEVSKIYDQMQR+GL+PDVVSYALLI AYG+
Sbjct: 244 RKVFALMAERGVPQSTVTYNSLMSFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGR 303
Query: 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS 385
ARREEEALAVFEEMLDAGVRP+HKAYNILLDAFAISGMV+QAR VFK MRRDRC+PD+CS
Sbjct: 304 ARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCS 363
Query: 386 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445
YTTMLSAYVNASDMEGAE FF+RL+QDG PNV+TYG LIKG+AKVNNLEKMMEIY++M+
Sbjct: 364 YTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQ 423
Query: 446 VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERN 505
+N IK NQTI TTIMDAYGKNKDF SAV+WYKEME G PPDQKA+NILLSLAKT DE+
Sbjct: 424 LNSIKANQTILTTIMDAYGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQK 483
Query: 506 EANELLGNFNHPNN--EPGINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDD 563
EA++L+G +P++ ING S D++ DD+ D++DD + D + D D +D
Sbjct: 484 EASQLVG---YPDDCGIQSINGASRFADDDGSDDETDDEDDYDEADKNDDEDDCDGVDDT 540
Query: 564 AEETIACSGKEDELIFFNGDHQRSQEGLHTLQTVDL 599
A +T++ S + ++LIF +GD+Q + E LH L +DL
Sbjct: 541 A-KTVSYSKECEDLIFLDGDNQHNLEALHALTVIDL 575
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 833 bits (2152), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/515 (77%), Positives = 449/515 (87%), Gaps = 2/515 (0%)
Query: 1 MPQTLFLKPFISPSSINFSQQNVPVSPLDANFKVHRRV--GVICMGMLAPRKFMQKRRKV 58
M TL KP+ISP+S N+ Q V V+ N+ RRV V+ GML+PRKF+Q+R+KV
Sbjct: 1 MAPTLSFKPYISPASTNWRQPKVVVNSNAVNWNGKRRVEVTVVARGMLSPRKFLQRRKKV 60
Query: 59 EVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW 118
EVFKD ADEA KNWR LM QIEE S V+VL+S+ Q LPK LVLGTLVR KQLKKW
Sbjct: 61 EVFKDEADEAYHKNWRGLMRQIEETDSPVSVLKSKLINNQSLPKHLVLGTLVRFKQLKKW 120
Query: 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 178
++VS++LEW+R QSWWDFNEMD LMLITAYGKQG+F+ AEKVLS+MNK GY P+VVSHTA
Sbjct: 121 HLVSQILEWVRTQSWWDFNEMDSLMLITAYGKQGNFSAAEKVLSYMNKMGYVPNVVSHTA 180
Query: 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE 238
LMEAYGRG RY NAEAIFRRMQSSGP+PSA+TYQIILK FVE NKFKEAEEVF TLLDEE
Sbjct: 181 LMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNKFKEAEEVFETLLDEE 240
Query: 239 KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 298
KSPLKPDQKMFHMMIYM++KAG YEKAR++FALM +RGV +STVTYNSLMSFETNYKEVS
Sbjct: 241 KSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVTYNSLMSFETNYKEVS 300
Query: 299 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 358
KIYDQMQR+GLQPDV+SYALLINAYGKARRE+EALAVFEEMLDAGVRPTHKAYNILLDAF
Sbjct: 301 KIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAGVRPTHKAYNILLDAF 360
Query: 359 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418
AISGMV+QARTVFK MRRDR +PD+CSYTTMLSAYVNASDM GAE FF RLKQDG PNV
Sbjct: 361 AISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFNRLKQDGLEPNV 420
Query: 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478
+TYG LIKGYAK NNL+KMME Y++M++ G+K NQTIFTTIMDAYGKNKDF SAV+WYKE
Sbjct: 421 VTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNKDFGSAVIWYKE 480
Query: 479 MESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513
ME G PPDQKAKNILLSLAKTADE+ EAN+++G+
Sbjct: 481 MEQYGVPPDQKAKNILLSLAKTADEQKEANQMVGH 515
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040 [Vitis vinifera] gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/484 (78%), Positives = 430/484 (88%), Gaps = 3/484 (0%)
Query: 42 CMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLP 101
+ MLAPRKFMQ+R+K+EVF+DAADEA ++ WRR+M +IEEVGSAV+VL T+ Q LP
Sbjct: 47 VVSMLAPRKFMQRRKKIEVFRDAADEAEQRKWRRMMKEIEEVGSAVSVLS---TKNQALP 103
Query: 102 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 161
+DLVLGTLVR KQLKKW++VSE+LEWL+ Q WWDF+EMDFLML+TAYGKQGDFNKAE+V
Sbjct: 104 RDLVLGTLVRFKQLKKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVF 163
Query: 162 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221
M+KKGY+PSV+SHTALMEAYG+G +Y AE++FRRM SSGP PSALTYQ+ILK+FVE
Sbjct: 164 GDMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEG 223
Query: 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 281
NKFKEAEE F TLLD+EKSPLKPDQKMFHMMIYMY+KAG YEKARK+F LM ERGV QST
Sbjct: 224 NKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQST 283
Query: 282 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341
VTYNSLMSFETNYKEVSK YDQMQRAGL+PDVVSYALLINAYGKARREEEALAVFEEMLD
Sbjct: 284 VTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLD 343
Query: 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 401
AGVRPTHKAYNILLDAFAISGMVDQARTVFK MRRDRC+PDICSYTTMLSAYVNASDMEG
Sbjct: 344 AGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEG 403
Query: 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461
AEKFFRRLKQDGF PNV+TYGTLIKGYAK++NLEKMME Y++M+V+GIK NQ I+T +MD
Sbjct: 404 AEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMD 463
Query: 462 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 521
AYGKNKDF SAV W+KEM CG PPD+KA NILLSLAKT E+ EAN L+G + +N
Sbjct: 464 AYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLLVGYSSKYSNGQ 523
Query: 522 GING 525
NG
Sbjct: 524 MDNG 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/513 (74%), Positives = 442/513 (86%), Gaps = 1/513 (0%)
Query: 1 MPQTLFLKPFISPSSINFSQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEV 60
M Q + KPF+S + N SQ+ + + ++ K+ R V+CMGMLAPRKF+QKRRK+EV
Sbjct: 1 MSQAVIFKPFVSVPTSNHSQRKLHNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKIEV 60
Query: 61 FKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWN 119
FKDAADE +K WR LM +IE GSAV VLR RT G Q LP+DLVLGTLVR KQLKKWN
Sbjct: 61 FKDAADETDQKRWRGLMLEIESTGSAVPVLRQYRTDGDQGLPRDLVLGTLVRFKQLKKWN 120
Query: 120 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL 179
+VSE+LEWLR Q+WW+F+EMDFLMLITAYGK G+FN AE+VLS ++K G +P+V+S+TAL
Sbjct: 121 LVSEILEWLRYQNWWNFSEMDFLMLITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTAL 180
Query: 180 MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK 239
ME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE +KFKEAEEVF TLLDE+K
Sbjct: 181 MESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKK 240
Query: 240 SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299
SPLKPDQKM+HMMIYMYKKAG Y+KARK+F+ M +GV QSTVTYNSLMSFETNYKEVSK
Sbjct: 241 SPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQSTVTYNSLMSFETNYKEVSK 300
Query: 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359
IYDQMQR+G+QPDVVSYALLI AYG+ARREEEAL+VFEEMLDAGVRPTHKAYNILLDAFA
Sbjct: 301 IYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419
ISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEGAEKFF+R+K DGF PN++
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479
TYGT+IKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMDA G+ KDF SA+ WYKEM
Sbjct: 421 TYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKDFGSALGWYKEM 480
Query: 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLG 512
ESCG PPDQKAKN+LLSL T DE +EA EL G
Sbjct: 481 ESCGVPPDQKAKNVLLSLYSTQDELDEAKELTG 513
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/569 (69%), Positives = 464/569 (81%), Gaps = 10/569 (1%)
Query: 1 MPQTLFLKPFISPSSINFSQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEV 60
M Q + KPF+S S N SQ+ + + ++ K+ R V+CMGMLAPRKF+QKRRK+EV
Sbjct: 1 MSQAVIFKPFVSVPSSNHSQRKLQNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKMEV 60
Query: 61 FKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWN 119
FKDAADE +K WR LM +IE GSAV VLR +T G Q LP+DLVLGTLVR KQLKKWN
Sbjct: 61 FKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWN 120
Query: 120 VVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL 179
+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VLS ++K G P+V+S+TAL
Sbjct: 121 LVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTAL 180
Query: 180 MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK 239
ME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE +KFKEAEEVF TLLDE+K
Sbjct: 181 MESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKK 240
Query: 240 SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299
SPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QSTVTYNSLMSFET+YKEVSK
Sbjct: 241 SPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSK 300
Query: 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359
IYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLDAGVRPTHKAYNILLDAFA
Sbjct: 301 IYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFA 360
Query: 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419
ISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEGAEKFF+R+K DGF PN++
Sbjct: 361 ISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIV 420
Query: 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479
TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMDA G+ K+F SA+ WYKEM
Sbjct: 421 TYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEM 480
Query: 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDD 539
ESCG PPDQKAKN+LLSLA T DE EA EL G N + + DDD
Sbjct: 481 ESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNET---------ATIIARVYGSDDD 531
Query: 540 DEDDDDNIYHDGDGDGDGDDNEDDAEETI 568
+E +D D + +GDD++DDA ET+
Sbjct: 532 EEGVEDISSESSDDEDEGDDDDDDARETV 560
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/530 (71%), Positives = 445/530 (83%), Gaps = 3/530 (0%)
Query: 10 FISPSSINFSQQNVPVSPLD---ANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAAD 66
IS S + Q +P + A+ ++ R+ V+C GML PRKFMQ+RRK EVFKDAAD
Sbjct: 4 LISKSHCHLRQLPLPHTRTGNGIASVRMSGRMEVVCRGMLKPRKFMQRRRKFEVFKDAAD 63
Query: 67 EAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLE 126
EA +KNWRR+M +IEE GSAV+VL SE+ Q +PKDL++GTL+R KQLKKW++V E+L+
Sbjct: 64 EADQKNWRRIMTEIEESGSAVSVLSSEKINNQNIPKDLLVGTLIRFKQLKKWHLVVEILD 123
Query: 127 WLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG 186
WLR Q+WWDF +MDF MLITAYGK GDFN AEKVL MNK GY P+VVS TALMEAYG+G
Sbjct: 124 WLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEAYGKG 183
Query: 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ 246
GRY NAEAIFRRMQ GP PSA TYQIILK FV+ NK++EAEE+F LL++E SPLKPDQ
Sbjct: 184 GRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNKYREAEELFDNLLNDENSPLKPDQ 243
Query: 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQR 306
KMF+MMIYMYKKAG YEKARK FALMAERG+QQ+TVTYNSLMSFET+YKEVS IYDQMQR
Sbjct: 244 KMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVTYNSLMSFETDYKEVSNIYDQMQR 303
Query: 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 366
A L+PDVVSYALL++AYGKARREEEALAVFEEMLDAGVRPT KAYNILLDAF+ISGMV+Q
Sbjct: 304 ADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSISGMVEQ 363
Query: 367 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426
A+TVFK MRRDR PD+CSYTTMLSAYVNA DMEGAEKFF+RL QD F PNV+TYGTLIK
Sbjct: 364 AQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPNVVTYGTLIK 423
Query: 427 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486
GYAK+N+LE +M+ Y++M V GIK NQTI TTIMDAYGK+ DFDSAV W+KEMES G PP
Sbjct: 424 GYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPP 483
Query: 487 DQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDD 536
DQKAKN+LLSL KT +ER EANEL+G+F+ N+ +NG+ VDE++++
Sbjct: 484 DQKAKNVLLSLPKTDEEREEANELVGHFSENNSLSKVNGIVKLVDEDEEN 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/522 (72%), Positives = 440/522 (84%), Gaps = 6/522 (1%)
Query: 10 FISPSSINFSQQNVPVSPLD-----ANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDA 64
IS S + QQ +P+ P A ++ R+ V+C GML PRKFMQ+RRK EVFKD+
Sbjct: 4 LISKSHCHLRQQ-LPLQPTRTGNGIARVRMSGRMEVVCRGMLKPRKFMQRRRKFEVFKDS 62
Query: 65 ADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEV 124
ADEA +KNWRR+M +IEE GSAV+VL +E+ Q +PKDLV+GTL+R KQLKKWN+V E+
Sbjct: 63 ADEADQKNWRRIMTEIEESGSAVSVLSAEKINNQNIPKDLVVGTLIRFKQLKKWNLVVEI 122
Query: 125 LEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 184
LEWLR Q+WWDF +MDF MLITAYGK GDFN AEKVL MNK GYAP+VVS TALMEAYG
Sbjct: 123 LEWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYG 182
Query: 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP 244
+GGRY NAEAIFRRMQ GP PSA TYQIILK FV+ NKF+EAEE+F LL++E SPLKP
Sbjct: 183 KGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNKFREAEELFDNLLNDENSPLKP 242
Query: 245 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQM 304
DQKMF+MMIYM+KKAG YEKARK FA MAE G+QQ+TVTYNSLMSFETNYKEVS IYDQM
Sbjct: 243 DQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVTYNSLMSFETNYKEVSNIYDQM 302
Query: 305 QRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV 364
QRA L+PDVVSYALL++AYGKARREEEALAVFEEMLDAG+RPT KAYNILLDAF+ISGMV
Sbjct: 303 QRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAGIRPTRKAYNILLDAFSISGMV 362
Query: 365 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 424
+QA+TVFK MRRDR PD+CSYTTMLSAY+NA DMEGAEKFF+RL QDGF PNV+TYGTL
Sbjct: 363 EQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPNVVTYGTL 422
Query: 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484
IKGYAK+N+LE +M+ Y++M + GIK NQTI TTIMDAYGK+ DFDSAV W+KEMES G
Sbjct: 423 IKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGI 482
Query: 485 PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGL 526
PPDQKAKN+LLSLAKT +ER EANEL+ +F+ ++ P +NG+
Sbjct: 483 PPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKVNGI 524
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/551 (70%), Positives = 454/551 (82%), Gaps = 10/551 (1%)
Query: 19 SQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMN 78
SQ+ + + ++ K+ R V+CMGMLAPRKF+QKRRK+EVFKDAADE +K WR LM
Sbjct: 26 SQRKLQNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLML 85
Query: 79 QIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 137
+IE GSAV VLR +T G Q LP+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+
Sbjct: 86 EIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFS 145
Query: 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFR 197
E+DFLMLITAYGK G+FN AE+VLS ++K G P+V+S+TALME+YGRGG+ NAEAIFR
Sbjct: 146 EIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFR 205
Query: 198 RMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK 257
RMQSSGP PSA+TYQIILK FVE +KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYK
Sbjct: 206 RMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYK 265
Query: 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYA 317
KAG YEKARK+F+ M +GV QSTVTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYA
Sbjct: 266 KAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYA 325
Query: 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377
LLI AYG+ARREEEAL+VFEEMLDAGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRD
Sbjct: 326 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 385
Query: 378 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 437
R PD+ SYTTMLSAYVNASDMEGAEKFF+R+K DGF PN++TYGTLIKGYAK N++EKM
Sbjct: 386 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKM 445
Query: 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497
ME+Y+KMR++GIK NQTI TTIMDA G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSL
Sbjct: 446 MEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 505
Query: 498 AKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDG 557
A T DE EA EL G N + + DDD+E +D D + +G
Sbjct: 506 ASTQDELEEAKELTGIRNET---------ATIIARVYGSDDDEEGVEDISSESSDDEDEG 556
Query: 558 DDNEDDAEETI 568
DD++DDA ET+
Sbjct: 557 DDDDDDARETV 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/523 (71%), Positives = 431/523 (82%), Gaps = 8/523 (1%)
Query: 10 FISPSSINFSQQNVPVSPLDA--------NFKVHRRVGVICMGMLAPRKFMQKRRKVEVF 61
IS S + + + PL N K+ R+ V+C GML PRKFMQ++RK+ VF
Sbjct: 4 LISKSHCHLGLGQLSLQPLQTRKLEYGIVNVKMSGRLKVMCKGMLTPRKFMQRKRKMVVF 63
Query: 62 KDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVV 121
KDAADEA +KNW RLM I+E GSAV+VL SE+ + Q +PK LV+GTL+R KQLKKWN+V
Sbjct: 64 KDAADEAEQKNWWRLMKLIDETGSAVSVLNSEKMKNQTIPKALVVGTLMRFKQLKKWNLV 123
Query: 122 SEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME 181
+E+LEWLR Q+WWDF +MDF MLITAYGK GDFN AEKVL MNK GYAP+VVS TALME
Sbjct: 124 AEILEWLRAQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALME 183
Query: 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP 241
AYG+GGRY NAEAIFRRMQ+ GP PSA TYQIILK FV+ NKFKEAEEVF LL++EKSP
Sbjct: 184 AYGKGGRYNNAEAIFRRMQTFGPEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSP 243
Query: 242 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 301
L+PDQKMF+MMIYMYKK+G +EKAR+ FALMAERG++++TVTYNSLMSFETNYKEVS IY
Sbjct: 244 LRPDQKMFNMMIYMYKKSGSHEKARQTFALMAERGIKKATVTYNSLMSFETNYKEVSNIY 303
Query: 302 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 361
DQMQRA L+PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT KAYNILLDAF+IS
Sbjct: 304 DQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTRKAYNILLDAFSIS 363
Query: 362 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421
GMV+QAR VFK MRRD+ PD+CSYTTMLSAYVNA DMEGAEKFF+RL QDGF PNV+TY
Sbjct: 364 GMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDGFEPNVVTY 423
Query: 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481
GTLIKGYAK N++EK+ME Y++M GIK NQTI TTIMDA+GKN DFDSAV W+KEM
Sbjct: 424 GTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAHGKNGDFDSAVNWFKEMAL 483
Query: 482 CGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 524
G PDQKAKNILLSLAKT ++ EANEL+ + NN P +N
Sbjct: 484 NGLLPDQKAKNILLSLAKTEEDIKEANELVLHSIEINNLPKVN 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 599 | ||||||
| TAIR|locus:2077735 | 590 | AT3G59040 "AT3G59040" [Arabido | 0.824 | 0.837 | 0.753 | 5.8e-201 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.631 | 0.461 | 0.271 | 3.8e-44 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.729 | 0.616 | 0.256 | 2.1e-41 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.580 | 0.379 | 0.280 | 1.1e-40 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.721 | 0.578 | 0.262 | 1.3e-39 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.632 | 0.461 | 0.258 | 1.8e-39 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.744 | 0.546 | 0.267 | 2.3e-39 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.707 | 0.673 | 0.246 | 8.1e-38 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.574 | 0.353 | 0.274 | 2.9e-37 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.682 | 0.603 | 0.242 | 4e-37 |
| TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1945 (689.7 bits), Expect = 5.8e-201, P = 5.8e-201
Identities = 373/495 (75%), Positives = 430/495 (86%)
Query: 19 SQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMN 78
SQ+ + + ++ K+ R V+CMGMLAPRKF+QKRRK+EVFKDAADE +K WR LM
Sbjct: 26 SQRKLQNNIINVGVKIQNRFRVVCMGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLML 85
Query: 79 QIEEVGSAVAVLRSERTRG-QPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 137
+IE GSAV VLR +T G Q LP+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+
Sbjct: 86 EIESTGSAVPVLRQYKTDGDQGLPRDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFS 145
Query: 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFR 197
E+DFLMLITAYGK G+FN AE+VLS ++K G P+V+S+TALME+YGRGG+ NAEAIFR
Sbjct: 146 EIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFR 205
Query: 198 RMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK 257
RMQSSGP PSA+TYQIILK FVE +KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYK
Sbjct: 206 RMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYK 265
Query: 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYA 317
KAG YEKARK+F+ M +GV QSTVTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYA
Sbjct: 266 KAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYA 325
Query: 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377
LLI AYG+ARREEEAL+VFEEMLDAGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRD
Sbjct: 326 LLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD 385
Query: 378 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 437
R PD+ SYTTMLSAYVNASDMEGAEKFF+R+K DGF PN++TYGTLIKGYAK N++EKM
Sbjct: 386 RIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKM 445
Query: 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497
ME+Y+KMR++GIK NQTI TTIMDA G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSL
Sbjct: 446 MEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSL 505
Query: 498 AKTADERNEANELLG 512
A T DE EA EL G
Sbjct: 506 ASTQDELEEAKELTG 520
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 3.8e-44, P = 3.8e-44
Identities = 107/394 (27%), Positives = 203/394 (51%)
Query: 116 KKWNVVSEVLEWLRIQSWWDFNEM-D---FLMLITAYGKQGDFNKAEKVLSFMNKKGYAP 171
KK+++ +W Q D+ M D ++I+ GK+G + A + + + + G++
Sbjct: 149 KKFDLALRAFDWFMKQK--DYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSL 206
Query: 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 231
V S+T+L+ A+ GRY+ A +F++M+ G +P+ +TY +IL +F K
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263
Query: 232 MTLLDEEKSP-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS- 289
+L+++ KS + PD ++ +I K+ +++A ++F M G VTYN+L+
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323
Query: 290 FETNY--KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT 347
+ ++ KE K+ ++M G P +V+Y LI+AY + +EA+ + +M + G +P
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383
Query: 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 407
Y LL F +G V+ A ++F+ MR C P+IC++ + Y N K F
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 408 RLKQDGFVPNVITYGTLIKGYAKVNNLEKMME-IYDKMRVNGIKPNQTIFTTIMDAYGKN 466
+ G P+++T+ TL+ + + N ++ + ++ +M+ G P + F T++ AY +
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQ-NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 467 KDFDSAVVWYKEMESCGFPPDQKAKN-ILLSLAK 499
F+ A+ Y+ M G PD N +L +LA+
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 2.1e-41, P = 2.1e-41
Identities = 116/453 (25%), Positives = 220/453 (48%)
Query: 78 NQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 137
N IE+ + +A +R + + + LV+ +L R ++ ++ E R D
Sbjct: 211 NDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIER-----DKL 265
Query: 138 EMDFLM---LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194
E+D + +I + K GD +KA ++L G + + +++ A GR AEA
Sbjct: 266 ELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEA 325
Query: 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254
+F ++ SG +P Y +LK +V+ K+AE + + EK + PD+ + ++I
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM---EKRGVSPDEHTYSLLID 382
Query: 255 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS-FETN--YKEVSKIYDQMQRAGLQP 311
Y AG +E AR + M VQ ++ ++ L++ F +++ ++ +M+ G++P
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371
D Y ++I+ +GK + A+ F+ ML G+ P +N L+D G A +F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431
+ M R C P +Y M+++Y + + ++ ++K G +PNV+T+ TL+ Y K
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491
+E ++M+ G+KP+ T++ +++AY + + AV ++ M S G P A
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 492 NILLSLAKTADERN-EANELLGNFNHPNNEPGI 523
N L++ A D R+ EA +L +P +
Sbjct: 623 NSLIN-AFGEDRRDAEAFAVLQYMKENGVKPDV 654
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 100/357 (28%), Positives = 187/357 (52%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
+I+ G+ G A+++ GY +V + +AL+ AYGR G ++ A ++F M+ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 204 PRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGG 261
RP+ +TY ++ + +FK+ + F DE +++ ++PD+ F+ ++ + + G
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFF----DEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD---QMQRAGLQPDVVSYAL 318
+E AR LF M R ++Q +YN+L+ ++ ++ QM + P+VVSY+
Sbjct: 355 WEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414
Query: 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378
+I+ + KA R +EAL +F EM G+ +YN LL + G ++A + + M
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 438
D+ +Y +L Y + +K F +K++ +PN++TY TLI GY+K ++ M
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 439 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495
EI+ + + G++ + +++ ++DA KN SAV EM G P+ N ++
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 117/446 (26%), Positives = 216/446 (48%)
Query: 71 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW--NVVSEVLEWL 128
K++ RL + I++ S V + ++ L + VL +R K+ + NV E+LE
Sbjct: 142 KSYSRL-SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-- 198
Query: 129 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188
S N + +LI + G+ + A + M KG P+VV++ L++ Y + +
Sbjct: 199 ---SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 248
+ + R M G P+ ++Y +++ + KE V +T ++ L D+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV-LTEMNRRGYSL--DEVT 312
Query: 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---MSFETNYKEVSKIYDQMQ 305
++ +I Y K G + +A + A M G+ S +TY SL M N + DQM+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 306 RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 365
GL P+ +Y L++ + + EA V EM D G P+ YN L++ ++G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 366 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425
A V + M+ SPD+ SY+T+LS + + D++ A + R + + G P+ ITY +LI
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485
+G+ + ++ ++Y++M G+ P++ +T +++AY D + A+ + EM G
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 486 PDQKAKNILLSLAKTADERNEANELL 511
PD ++L++ EA LL
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 99/383 (25%), Positives = 183/383 (47%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
LI A G G++ +A +V M G P +V+H ++ AY G +Y A + F M+ +
Sbjct: 219 LINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAK 278
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 263
RP T+ II+ + + +A ++F ++ E+++ +PD F ++++Y G E
Sbjct: 279 VRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR-EKRAECRPDVVTFTSIMHLYSVKGEIE 337
Query: 264 KARKLFALMAERGVQQSTVTYNSLM-SFETNYKEVS--KIYDQMQRAGLQPDVVSYALLI 320
R +F M G++ + V+YN+LM ++ + + + +++ G+ PDVVSY L+
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 397
Query: 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380
N+YG++R+ +A VF M +P YN L+DA+ +G + +A +F+ M +D
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 457
Query: 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440
P++ S T+L+A + + + G N Y + I Y LEK + +
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517
Query: 441 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500
Y MR +K + FT ++ + + A+ + KEME P ++ + +L
Sbjct: 518 YQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSK 577
Query: 501 ADERNEANELLGNFNHPNNEPGI 523
+ EA + EP +
Sbjct: 578 QGQVTEAESIFNQMKMAGCEPDV 600
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 125/467 (26%), Positives = 224/467 (47%)
Query: 60 VFKDAADEAGKKNWRR---LMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTLVRLK 113
V++ A D K N L+N + + G A +L E +G +P +++ T++
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGL-VPNEVIYNTMID-G 398
Query: 114 QLKKWNVVSE--VLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP 171
+K ++V +E + Q + + + LI + + G+ AEK ++ M KG +P
Sbjct: 399 YCRKGDLVGARMKIEAMEKQGMKP-DHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSP 457
Query: 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 231
SV ++ L+ YGR + I + M+ +G P+ ++Y ++ + +K EA+ V
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517
Query: 232 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---M 288
D E + P ++++M+I G E A + M ++G++ + VTYN+L +
Sbjct: 518 R---DMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGL 574
Query: 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348
S E + ++ R GL+PDV +Y LI+ YG A + +A++EEM +G++PT
Sbjct: 575 SMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTL 634
Query: 349 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408
K Y++L+ G ++ +F M PD+ Y +L Y DME A ++
Sbjct: 635 KTYHLLISLCTKEG-IELTERLFGEMS---LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690
Query: 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468
+ + + TY +LI G KV L ++ + D+M ++P + I+ + + KD
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKD 750
Query: 469 FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515
+ SA VWY+EM+ GF D N L+S K EA ++ N
Sbjct: 751 YMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMN 797
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 8.1e-38, P = 8.1e-38
Identities = 108/439 (24%), Positives = 224/439 (51%)
Query: 66 DEAGKK-NWRRL-MNQIEEVGSAVAV-LRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVV 121
D +G + ++R++ +N++ ++ AV L + + +P P + L+ + ++ K+++V
Sbjct: 41 DFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLV 100
Query: 122 SEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME 181
+ E ++ N + +LI + ++ + A VL+ M K GY P +V+ +L+
Sbjct: 101 ISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-S 240
+ G R +A ++ +M G +P + T+ ++ N+ EA + L+D
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA----VALVDRMVVK 215
Query: 241 PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS-- 298
+PD + +++ K G + A L M + ++ V YN+++ NYK V+
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 299 -KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA 357
++ +M G++P+VV+Y LI R +A + +M++ + P ++ L+DA
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335
Query: 358 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR-RLKQDGFVP 416
F G + +A ++ M + PDI +Y+++++ + ++ A+ F + +D F P
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-P 394
Query: 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476
NV+TY TLIKG+ K +++ ME++ +M G+ N +TT++ + + ++ D+A + +
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 477 KEMESCGFPPDQKAKNILL 495
K+M S G PD +ILL
Sbjct: 455 KQMVSDGVLPDIMTYSILL 473
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 96/350 (27%), Positives = 174/350 (49%)
Query: 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200
+ LI Y ++ + + ++L M K+ S ++ +++ G A I + M
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 201 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260
+SG RP+ + Y ++K F++ ++F +A V L + ++ + PD ++ +I KA
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAK 501
Query: 261 GYEKARKLFALMAERGVQQSTVTYNSLMS--FETN-YKEVSKIYDQMQRAGLQPDVVSYA 317
++AR M E G++ + TY + +S E + + K +M+ G+ P+ V
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561
Query: 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377
LIN Y K + EA + + M+D G+ K Y +L++ + VD A +F+ MR
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621
Query: 378 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 437
+PD+ SY +++ + +M+ A F + ++G PNVI Y L+ G+ + +EK
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487
E+ D+M V G+ PN + TI+D Y K+ D A + EM+ G PD
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 4.0e-37, P = 4.0e-37
Identities = 104/429 (24%), Positives = 220/429 (51%)
Query: 103 DLVL-GTLVRL-KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKV 160
DLVL L+ L ++L ++ + L+ +S + + + +I YGK F +A +
Sbjct: 224 DLVLYSNLIELSRRLCDYSKAISIFSRLK-RSGITPDLVAYNSMINVYGKAKLFREARLL 282
Query: 161 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220
+ MN+ G P+ VS++ L+ Y ++ A ++F M+ T I++ ++ +
Sbjct: 283 IKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQ 342
Query: 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 280
+ KEA+ +F +L K ++P+ ++ ++ +Y +A + +A LF LM + ++Q+
Sbjct: 343 LDMVKEADRLFWSL---RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQN 399
Query: 281 TVTYNSLMSF--ET-NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 337
VTYN+++ +T +++ + + +MQ G++P+ ++Y+ +I+ +GKA + + A +F+
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459
Query: 338 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 397
++ +GV Y ++ A+ G++ A+ + ++ PD T ++ A
Sbjct: 460 KLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL----PDNIPRETAITILAKAG 515
Query: 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 457
E A FR+ + G V ++ +G +I Y++ ++E+++KMR G P+ +
Sbjct: 516 RTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIA 575
Query: 458 TIMDAYGKNKDFDSAVVWYKEM--ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515
+++AYGK ++F+ A Y+EM E C FP + + +LSL + + L F
Sbjct: 576 MVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQ--MLSLYSSKKDFEMVESL---FQ 630
Query: 516 HPNNEPGIN 524
++P +N
Sbjct: 631 RLESDPNVN 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYT2 | PP287_ARATH | No assigned EC number | 0.6959 | 0.9332 | 0.9588 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | gw1.I.723.1 | hypothetical protein (489 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 599 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam10446 | 449 | pfam10446, DUF2457, Protein of unknown function (D | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-04 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 6e-04 | |
| pfam11705 | 221 | pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-04 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 8e-04 | |
| PHA02608 | 80 | PHA02608, 67, prohead core protein; Provisional | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| PRK02363 | 129 | PRK02363, PRK02363, DNA-directed RNA polymerase su | 0.004 | |
| PTZ00007 | 337 | PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 73/352 (20%), Positives = 158/352 (44%), Gaps = 8/352 (2%)
Query: 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200
F ML++ D + A +VL + + G +T L+ + G+ +F M
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 201 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260
++G + T+ ++ A + +A + + + +KPD+ +F+ +I ++G
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPDRVVFNALISACGQSG 556
Query: 261 GYEKARKLFALM-AE-RGVQQSTVTYNSLMSFETNYKEVSK---IYDQMQRAGLQPDVVS 315
++A + A M AE + +T +LM N +V + +Y + ++
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375
Y + +N+ + + AL+++++M GV+P ++ L+D +G +D+A + + R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 376 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435
+ SY++++ A NA + + A + + +K P V T LI + N L
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487
K +E+ +M+ G+ PN ++ ++ A + D D + + + G P+
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 61/319 (19%), Positives = 149/319 (46%), Gaps = 4/319 (1%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
LI+ K G + +V M G +V + AL++ R G+ A + M+S
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 263
+P + + ++ ++ A +V + + E P+ PD ++ AG +
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDV-LAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 264 KARKLFALMAERGVQQSTVTYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLI 320
+A++++ ++ E ++ + Y ++ + ++ IYD M++ G++PD V ++ L+
Sbjct: 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656
Query: 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380
+ G A ++A + ++ G++ +Y+ L+ A + + +A +++ ++ +
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440
P + + +++A + + A + +K+ G PN ITY L+ + ++ + +++
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 441 YDKMRVNGIKPNQTIFTTI 459
+ + +GIKPN + I
Sbjct: 777 LSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-19
Identities = 83/363 (22%), Positives = 165/363 (45%), Gaps = 21/363 (5%)
Query: 159 KVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217
+L M K+G + H +A + K A + + P+ T+ +++ +
Sbjct: 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSV 446
Query: 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV 277
+ A V + L+ E + LK D K++ +I K+G + ++F M GV
Sbjct: 447 CASSQDIDGALRV-LRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 278 QQSTVTYNSLMSFETNYKEVSKI---YDQMQRAGLQPDVVSYALLINAYGKARREEEALA 334
+ + T+ +L+ +V+K Y M+ ++PD V + LI+A G++ + A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 335 VFEEMLDAG--VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTML 390
V EM + P H L+ A A +G VD+A+ V++ + + +P++ YT +
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--YTIAV 621
Query: 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK--GYAKVNNLEKMMEIYDKMRVNG 448
++ D + A + +K+ G P+ + + L+ G+A +L+K EI R G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG--DLDKAFEILQDARKQG 679
Query: 449 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 508
IK ++++M A K++ A+ Y++++S P N L++ ++ +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 509 ELL 511
E+L
Sbjct: 740 EVL 742
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 10/296 (3%)
Query: 234 LLDEEKSPLKPDQKMFHMMIY-MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292
L D EK L K++H + KK ++A + L+ + T+N LMS
Sbjct: 393 LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCA 448
Query: 293 NYKEVSKIYDQM---QRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 349
+ +++ + Q AGL+ D Y LI+ K+ + + VF EM++AGV
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409
+ L+D A +G V +A + MR PD + ++SA + ++ A +
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 410 KQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 467
K + P+ IT G L+K A +++ E+Y + IK ++T +++ +
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 468 DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 523
D+D A+ Y +M+ G PD+ + L+ +A A + ++A E+L + + G
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-17
Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)
Query: 136 FNEMD----------FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185
F+EM F LI + G KA M K P V AL+ A G+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 186 GGRYKNAEAIFRRMQS-SGP-RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK 243
G A + M++ + P P +T ++K A + A+EV+ + + +K
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI---HEYNIK 611
Query: 244 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK---I 300
+++ + + + G ++ A ++ M ++GV+ V +++L+ + ++ K I
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360
++ G++ VSY+ L+ A A+ ++AL ++E++ +RPT N L+ A
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420
+ +A V M+R P+ +Y+ +L A D + + K+DG PN++
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 421 YGTLI 425
+
Sbjct: 792 CRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 68/359 (18%), Positives = 144/359 (40%), Gaps = 18/359 (5%)
Query: 107 GTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNK 166
+ +L + E+ E L + + L+ A + V +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 167 KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 226
G+ P ++ + + G +A +F M P + ++ I+ V+A ++E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYRE 207
Query: 227 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS 286
A +F + ++ + + F +M+ G ++L + + GV T +
Sbjct: 208 AFALFREMWEDGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 287 LMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 343
L+ + + ++ ++D M V++ ++ Y EEAL ++ EM D+G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 344 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 403
V ++I++ F+ +++ A+ + R DI + T ++ Y ME A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462
F R+ + N+I++ LI GY K +E++++M G+ PN F ++ A
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 1e-15
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 18/262 (6%)
Query: 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237
AL++ Y + G ++A +F M P + + + +L + +EA ++ + D
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD- 318
Query: 238 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297
S + DQ F +MI ++ + E A++ A + G V +L+ + + +
Sbjct: 319 --SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 298 SK---IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL 354
++D+M R +++S+ LI YG R +A+ +FE M+ GV P H + +
Sbjct: 377 EDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 355 LDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413
L A SG+ +Q +F+ M + R P Y M+ ++ A RR
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--- 489
Query: 414 FVPNVITYGTLIKGYAKVNNLE 435
F P V + L+ NLE
Sbjct: 490 FKPTVNMWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 79/382 (20%), Positives = 156/382 (40%), Gaps = 23/382 (6%)
Query: 135 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194
D + M +I+A GD ++ ++ K G+A V +L++ Y G + AE
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKE-AEEVFMTLLDEEKSPLKPDQKMFHMMI 253
+F RM+ A+++ ++ + E N + A E + + E+ + PD+ ++
Sbjct: 345 VFSRME----TKDAVSWTAMISGY-EKNGLPDKALETYALM---EQDNVSPDEITIASVL 396
Query: 254 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK---IYDQMQRAGLQ 310
G + KL L +G+ V N+L+ + K + K ++ +
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--- 453
Query: 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370
DV+S+ +I R EAL F +ML ++P L A A G + + +
Sbjct: 454 -DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 371 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430
+ R D +L YV M A F ++D V+++ L+ GY
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD-----VVSWNILLTGYVA 566
Query: 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-SCGFPPDQK 489
+E++++M +G+ P++ F +++ A ++ + ++ ME P+ K
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 490 AKNILLSLAKTADERNEANELL 511
++ L A + EA +
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFI 648
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 80/358 (22%), Positives = 149/358 (41%), Gaps = 56/358 (15%)
Query: 170 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILKLFVEANKFKEAE 228
S VS + +E GR++ A +F +++ P A TY +++ + + +
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK 143
Query: 229 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288
V+ + E S +PDQ M + ++ M+ K G AR+LF M ER + ++ +++
Sbjct: 144 AVYWHV---ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTII 196
Query: 289 SF---ETNYKEVSKIYDQM------------------------QRAGLQPDVVSYAL--- 318
NY+E ++ +M RAG Q
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 319 --------LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370
LI+ Y K E+A VF+ M T A+N +L +A+ G ++A +
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 371 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430
+ MR S D +++ M+ + + +E A++ L + GF +++ L+ Y+K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 431 VNNLEKMMEIYDKM-RVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487
+E ++D+M R N I N ++ YG + AV ++ M + G P+
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWN-----ALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430
PD+ +Y T++ Y +E A K F +K+ G PNV TY LI G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359
PDVV+Y LI+ Y K + EEAL +F EM G++P Y+IL+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 416 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 465
P+V+TY TLI GY K +E+ ++++++M+ GIKPN ++ ++D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 53/336 (15%)
Query: 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 211
G+ A V M ++ + S L+ Y + G + A ++ RM +G RP T+
Sbjct: 135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271
+L+ EV ++ + + D + + +I MY K G AR +F
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVV---RFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 272 MAERGVQQSTVTYNSLMS--FETNY-KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 328
M R +++N+++S FE E +++ M+ + PD+++ +I+A
Sbjct: 248 MPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388
E + ++ G N L+ + G +A VF M D S+T
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359
Query: 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448
M+S Y + +P +K +E Y M +
Sbjct: 360 MISGY-----------------EKNGLP------------------DKALETYALMEQDN 384
Query: 449 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484
+ P++ +++ A D D V ++ E G
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 22/216 (10%)
Query: 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIF 196
+E+ F L+ G GD +KA ++L K+G VS+++LM A +K A ++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 197 RRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP-LKPDQKMFHMMIYM 255
++S RP+ T ++ E N+ +A EV L E K L P+ + +++
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEV----LSEMKRLGLCPNTITYSILLVA 763
Query: 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVS 315
++ + L + E G++ + V + + ++A + V
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCI---------TGLCLRRFEKACALGEPV- 813
Query: 316 YALLINAYGKARREEE----ALAVFEEMLDAGVRPT 347
+ ++ G+ + E + AL V+ E + AG PT
Sbjct: 814 --VSFDS-GRPQIENKWTSWALMVYRETISAGTLPT 846
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395
YN L+D + G V++A +F M++ P++ +Y+ ++
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 58/308 (18%), Positives = 127/308 (41%), Gaps = 52/308 (16%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
LI Y K GD A V M +K + V+ +++ Y G + A ++ M+ SG
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 263
T+ I++++F + A++ L+ ++ D ++ +Y K G E
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI---RTGFPLDIVANTALVDLYSKWGRME 377
Query: 264 KARKLFALMAERGVQQSTVTYNSLMSFETNY---KEVSKIYDQMQRAGLQPDVVSYALLI 320
AR +F M + + +++N+L++ N+ + +++++M G+ P+ V++ ++
Sbjct: 378 DARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 321 NAYGKARREEEALAVFEEML-DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 379
+A + E+ +F+ M + ++P Y +++ G++D+A + +RR
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPF 490
Query: 380 SP----------------------------------DICSYTTMLSAYVNASDMEGAEKF 405
P + +Y +L+ Y ++ A K
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
Query: 406 FRRLKQDG 413
LK+ G
Sbjct: 551 VETLKRKG 558
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 280 STVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325
VTYN+L+ + +E K++++M++ G++P+V +Y++LI+ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 59/277 (21%), Positives = 109/277 (39%), Gaps = 14/277 (5%)
Query: 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 211
GD + K+ +KG VV AL+E Y + A +F + P +++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISW 458
Query: 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271
I+ N+ EA F +L LKP+ + + G +++ A
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML----LTLKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 272 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331
+ G+ N+L+ ++ ++Q + DVVS+ +L+ Y +
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSM 572
Query: 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTML 390
A+ +F M+++GV P + LL A + SGMV Q F M +P++ Y ++
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427
A + A F ++ P+ +G L+
Sbjct: 633 DLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216
P VV++ L++ Y + G+ + A +F M+ G +P+ TY I++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452
+TY TLI G K +E+ +E++ +M+ GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185
LI Y K+G +A K+ + M K+G P+V +++ L++ +
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445
G P+V+TY TLI G + +++ +E+ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 451 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496
P+ + T++D Y K + A+ + EM+ G P+ +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPT 347
V+Y LI+ KA R EEAL +F+EM + G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 308 GLQPDVVSYALLINAYGKARREEEALAVFEEM 339
GL+PDVV+Y LI+ +A R +EA+ + +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
L+ Y K G A V M +K +++S AL+ YG GR A +F RM + G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 263
P+ +T+ +L + ++ E+F ++ + + +KP + MI + + G +
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--IKPRAMHYACMIELLGREGLLD 479
Query: 264 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA--------GLQPDVV- 314
+A +A++ + + + +L++ +I+ ++ G+ P+ +
Sbjct: 480 EA---YAMIRRAPFKPTVNMWAALLT-------ACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 315 SYALLINAYGKARREEEALAVFEEMLDAGVR 345
+Y +L+N Y + R+ EA V E + G+
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487
+ T++D K + A+ +KEM+ G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRP 346
+ +Y L+ A KA + ALAV EEM +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449
+TY +LI GY K LE+ +E++ +M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 3e-05
Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 9/262 (3%)
Query: 188 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 247
A AI + + + L L + EA E+ L+ P
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELL--PNSDLAG 60
Query: 248 MFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFET---NYKEVSKIYDQ 303
+ ++ K G E+A +L E + +L Y+E ++ ++
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 304 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA--YNILLDAFAIS 361
PD+ L + A + EEAL ++E+ L+ A L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 362 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421
G ++A + + + D + + Y+ E A +++ + + N
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 422 GTLIKGYAKVNNLEKMMEIYDK 443
L ++ E+ +E +K
Sbjct: 240 YNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 244 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289
PD ++ +I Y K G E+A KLF M +RG++ + TY+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418
+Y T++ A +E A + F+ +K+ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 314 VSYALLINAYGKARREEEALAVFEEMLDAGV 344
V+Y LI+ Y KA + EEAL +F+EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 451
+ TY L+ AK + + + + ++M+ +G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 489 KAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNIY 548
K +N + L K A+E E + +++ + D++DD+DD+DEDDDD+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDD---DEDEDDDDDDDDEDDEDEDDDDSTL 89
Query: 549 HDGDGDGDGDDNEDDAEETIACSGKEDE 576
HD DG NE D E A S E +
Sbjct: 90 HDDSSADDG--NETDNEAGFADSDDESD 115
|
This is a family of uncharacterized proteins. Length = 449 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (96), Expect = 6e-04
Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 7/226 (3%)
Query: 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP 171
L +L + E+LE L L G + +A ++L P
Sbjct: 69 LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128
Query: 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEE 229
+ + A G Y+ A ++ + P + A + L +++EA E
Sbjct: 129 DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188
Query: 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289
+ L D + + +Y K G YE+A + + E + YN +
Sbjct: 189 LLEKALKLNP---DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245
Query: 290 FETNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALA 334
+ + +++A L PD+ + L + E A
Sbjct: 246 LL-ELGRYEEALEALEKALELDPDLYNLGLALLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 528 ISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEE 566
D+ DDDDD+DDDD++ D D D DD++DD E
Sbjct: 61 EDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 531 DEEDDDDDDDEDDDDNIYH------DGDGDGDGDD 559
+EED+D DDD+DDDD+ Y+ +G+ D DD
Sbjct: 183 EEEDEDFDDDDDDDDDDYNAENYFDNGEDDDYDDD 217
|
RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 7e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 206
+ ++ AL+ A + G A A+ M++SG +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484
+ +++ Y K + A+ +KEM+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208
V++ L++ + GR + A +F+ M+ G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 530 VDEEDDDDDDDEDDDDNIYHDGDGDGDGDD---NEDDAEE 566
DDDDDDD+DDD D D D D DD EDD +E
Sbjct: 65 DVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 8e-04
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 532 EEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDD 563
EE +DDDDDEDDDD+ D D D DD+EDD
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDD 79
|
Length = 80 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 9e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSP 381
YN LL A A +G D A V + M+ P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 9e-04
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414
+Y +++S Y A +E A + F+ +K+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI 383
YN L+D +G V++A +FK M+ PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203
V++ +L+ Y + G+ + A +F+ M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 531 DEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEE 566
++E+D+DD DDDD+ D D DD+ D ++
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDD 93
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375
G++P YN L+D +G VD+A + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 350 AYNILLDAFAISGMVDQARTVFKCMRRDRC 379
YN L+ + +G +++A +FK M+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 531 DEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAE 565
+ DDD DD+ D+ + + D D + D++E+D E
Sbjct: 95 MDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
|
Length = 129 |
| >gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 529 SVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEETIACSGKEDELIF 579
+EDDDD D D D+ D + D D + EDD E + K +EL
Sbjct: 286 YSSDEDDDDYDSYDSSDSASSDSNSDVD-TNEEDDRGEKESNGAKSNELHL 335
|
Length = 337 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.35 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.15 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.03 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.98 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.95 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.73 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.69 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.66 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.54 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.54 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.45 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.38 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.35 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.26 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.26 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.23 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.19 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.05 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.86 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.75 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.6 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.59 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.41 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.39 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.35 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.32 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.3 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.28 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.22 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.17 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.16 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.09 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.0 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.92 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.89 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.84 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.74 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.72 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.66 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.61 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.29 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.15 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.05 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.96 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.92 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.92 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.8 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.26 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.24 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.08 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.57 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.56 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.51 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.51 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.73 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.67 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.51 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.33 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.68 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.33 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.29 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.23 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.92 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.61 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.5 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 91.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.02 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.96 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.18 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.75 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.52 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.89 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.44 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 88.05 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.72 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 86.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.32 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.26 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.55 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.54 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.48 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.34 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.89 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.43 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.42 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.32 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.3 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.29 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 84.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.99 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.94 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.74 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.68 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 82.56 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.44 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.12 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.1 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.56 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.27 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.01 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 80.71 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.26 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=548.39 Aligned_cols=492 Identities=18% Similarity=0.262 Sum_probs=394.8
Q ss_pred cchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHH-HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHH
Q 007543 68 AGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 143 (599)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 143 (599)
.+.+.|+.++..+.+.+ +|..+|+.+....+..|+..++..+ ..+...++.+.+.+++..+.+.+ +.++..+|+.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 45568999999998765 5666666443333334555555444 44667788899999999988876 5788999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH------------
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY------------ 211 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------------ 211 (599)
|+++|++.|++++|.++|++|.+ ||+++||++|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999975 69999999999999999999999999999888777766655
Q ss_pred -----------------------HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 212 -----------------------QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 212 -----------------------~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+.|+++|++.|++++|.++|+.|. .+|..+||.+|.+|++.|+.++|.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 556667777777778888877774 46777888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 269 FALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
|++|.+.|+.||..||++++.+ .+++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~ 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----R 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----C
Confidence 8888888888888888888876 36677788888888888888888888888888888888888888888775 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTL 424 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l 424 (599)
||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+++
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 677888888888888888888888888888888888888888888888888888888888888864 5778888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCc
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADE 503 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 503 (599)
+++|++.|++++|.+++++| ++.|+..+|++++.+|+.+|+++.|..+++++.+ +.|+ ..+|..|++.|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 88888888888888887765 5678888888888888888888888888888765 4554 5678888889999999
Q ss_pred HHHHHHHHHhccCCCC--CCCcccccccccCCC---CCCCCCCCCCCCcccCCCC--------------CCCCCCCcchh
Q 007543 504 RNEANELLGNFNHPNN--EPGINGLSISVDEED---DDDDDDEDDDDNIYHDGDG--------------DGDGDDNEDDA 564 (599)
Q Consensus 504 ~~~A~~~~~~~~~~~~--~p~~~~~~~~i~~~~---~~~d~~~~~~~~i~~~~~~--------------~~~~~~~~~~~ 564 (599)
+++|.++++.|.+.|. .|+++|+ ++++.. ..+|..||...+||..++. ....+++++++
T Consensus 544 ~~~A~~v~~~m~~~g~~k~~g~s~i--~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~ 621 (697)
T PLN03081 544 QAEAAKVVETLKRKGLSMHPACTWI--EVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDE 621 (697)
T ss_pred HHHHHHHHHHHHHcCCccCCCeeEE--EECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHH
Confidence 9999999999986664 5777776 666654 6889999999999876654 22368899999
Q ss_pred hhhhhcCCCCcceeeecC
Q 007543 565 EETIACSGKEDELIFFNG 582 (599)
Q Consensus 565 ~~~~~~~~~e~~a~a~~~ 582 (599)
|+..++.||||+||||.=
T Consensus 622 ~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 622 EKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred HHHHHHhccHHHHHHhhC
Confidence 999999999999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=555.20 Aligned_cols=515 Identities=18% Similarity=0.261 Sum_probs=419.2
Q ss_pred hhhhcCCCCchHHHHHhhhhhccchhhcccchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHHH-Hhhh
Q 007543 39 GVICMGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQ 114 (599)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l~-~~~~ 114 (599)
..++.+.+..+.+...+..++.+ +.+|+++||.+|.+|.+.| +|..+|+.+ ...+..|+..++..+. .+..
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACEL 300 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHh
Confidence 34555566666666666665554 5689999999999998877 556666644 3455667666666555 4677
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++.+.+.+++..+.+.+ +.++..+|+.|+.+|+++|++++|.++|++|.. ||.++||++|.+|++.|++++|++
T Consensus 301 ~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 301 LGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred cCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 889999999999999876 678999999999999999999999999999974 699999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. +.|+.|+..+||.||++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE---RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999998 457889999999999999999999999999999875
Q ss_pred cCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 275 RGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 275 ~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
+|.++|++++.+ .++.++|..+|++|.. +++||..||+.++.+|++.|..+.+.+++..+.+.|+.+|..++
T Consensus 453 ----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~ 527 (857)
T PLN03077 453 ----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527 (857)
T ss_pred ----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceec
Confidence 578889988886 4778888999998875 47888888888888888888888888888888888888887777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
++||++|+++|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 528 naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 528 NALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred hHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 78888888888777777777766 4677777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-------------
Q 007543 432 NNLEKMMEIYDKMR-VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL------------- 497 (599)
Q Consensus 432 g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~------------- 497 (599)
|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|.+++++|. +.||..+|.+|+.+
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 77777777777777 56777777777777777777777777777777773 56666666665554
Q ss_pred ---------------------HhhcCcHHHHHHHHHhccCCCC--CCCcccccccccCCC---CCCCCCCCCCCCcccCC
Q 007543 498 ---------------------AKTADERNEANELLGNFNHPNN--EPGINGLSISVDEED---DDDDDDEDDDDNIYHDG 551 (599)
Q Consensus 498 ---------------------~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~~i~~~~---~~~d~~~~~~~~i~~~~ 551 (599)
|...|++++|.++.+.|++.+. .|+.+|+ +++++. ..+|..||+..+||..+
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i--e~~~~~~~f~~~d~~h~~~~~i~~~l 757 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV--EVKGKVHAFLTDDESHPQIKEINTVL 757 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE--EECCEEEEEecCCCCCcchHHHHHHH
Confidence 4567888888888888886554 5666665 788765 68899999999999866
Q ss_pred CC--------------CCCCCCCcchhhhhhhcCCCCcceeeecC
Q 007543 552 DG--------------DGDGDDNEDDAEETIACSGKEDELIFFNG 582 (599)
Q Consensus 552 ~~--------------~~~~~~~~~~~~~~~~~~~~e~~a~a~~~ 582 (599)
+. .... +.++++|+..++.||||+||||.=
T Consensus 758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l 801 (857)
T PLN03077 758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGL 801 (857)
T ss_pred HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhh
Confidence 64 1112 446788999999999999999963
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-61 Score=526.97 Aligned_cols=478 Identities=18% Similarity=0.294 Sum_probs=421.7
Q ss_pred hHHHHHhhhhhccchhh-cccchhhHHHHHHHHhhhch---HHHHHHHhhhcCCCCChHHHHHHH-HHhhhcccHHHHHH
Q 007543 49 RKFMQKRRKVEVFKDAA-DEAGKKNWRRLMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTL-VRLKQLKKWNVVSE 123 (599)
Q Consensus 49 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~a~~ 123 (599)
+.+...+..++.+.... ..++...++.++..+.+.+. |..+++.+. .|+..++..+ ..+++.++++.|.+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 34444444454443322 12344555666667766554 444444221 1555555544 45778899999999
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 124 VLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
+|+.+.+.+ +.++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|
T Consensus 459 lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 999998876 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
+.||..+|+.+|.+|++.|++++|.++|++|... ..++.||..+|+.||.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 9999999999999999999999999999999753 357899999999999999999999999999999999999999999
Q ss_pred HHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 284 YNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 284 ~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
|+.++.+ .|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999986 5889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (599)
.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHh----c-------------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 441 YDKMRVNGIKPNQTIFTTIMDAYGK----N-------------------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 441 ~~~m~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||..||..++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999876542 1 2246799999999999999999999999988
Q ss_pred HhhcCcHHHHHHHHHhccCCCCCCCcccccccccCC
Q 007543 498 AKTADERNEANELLGNFNHPNNEPGINGLSISVDEE 533 (599)
Q Consensus 498 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~ 533 (599)
+...+..+.+..+++.+...+..|....++.+++..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 888899999999999887777778888877777764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=520.86 Aligned_cols=457 Identities=18% Similarity=0.280 Sum_probs=417.9
Q ss_pred hcccchhhHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHH-HHHHH-HhhhcccHHHHHHHHHHHHHcCCCCCCHH
Q 007543 65 ADEAGKKNWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLV-LGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEM 139 (599)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~-~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 139 (599)
...++...|..++..+.+. .+|..+|+.|.. .+.++++.+ ...+. .+...+..+.|.++++.+.. ++..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHH
Confidence 3445667788888888544 467888886544 444554443 33333 35566788888888876653 7899
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
+|+.|+.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhcc---cCCH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE--RGVQQSTVTYNSLMSF---ETNY 294 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~---~~~~ 294 (599)
+.|++++|.++|+.|. ..++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++++.+ .|++
T Consensus 519 k~G~~eeAl~lf~~M~---~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMR---SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HCcCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999998 467899999999999999999999999999999986 6899999999999986 5899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 295 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 295 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (599)
++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 375 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 375 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c-------------------CcHHHHHHHH
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----A-------------------DERNEANELL 511 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~A~~~~ 511 (599)
+|++++.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ . +..++|..++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999876542 1 2346799999
Q ss_pred HhccCCCCCCCcccccccc
Q 007543 512 GNFNHPNNEPGINGLSISV 530 (599)
Q Consensus 512 ~~~~~~~~~p~~~~~~~~i 530 (599)
++|.+.|..|+..++..++
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH
Confidence 9999999999988776665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=536.98 Aligned_cols=513 Identities=18% Similarity=0.250 Sum_probs=371.8
Q ss_pred hcccchhhHHHHHHHHhhhc---hHHHHHHHhhhcCCCCChHHHHHHHHH-hhhcccHHHHHHHHHHHHHcCCCCCCHHh
Q 007543 65 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMD 140 (599)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~---~a~~~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 140 (599)
.+++|+++||.+|.++.+.| +|..+|+.+. ..+..|+..++..+.+ +...+++..+.+++..+.+.+ +.++..+
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~ 224 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG-FELDVDV 224 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC-CCcccch
Confidence 35689999999999998876 5566666543 3456676666665544 556677778888888887765 5677788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
|++|+.+|+++|++++|.++|++|.+ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 88888888888888888888888864 57788888888888888888888888888888888887777777777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEV 297 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a 297 (599)
.|+.+.|.+++..+. +.|+.||..+||.|+.+|++.|++++|.++|++|.. ||.++||+++.+ .|++++|
T Consensus 301 ~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 301 LGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred cCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHH
Confidence 777777777777776 345667777777777777777777666666666643 466666666664 3556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|++||++|+++|++++|.++|++|.+
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 452 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE- 452 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-
Confidence 6666666666666666666666666666666666666666666666666666666666666666666666666665542
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------------------hCCC---------
Q 007543 378 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK----------------------------------QDGF--------- 414 (599)
Q Consensus 378 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------------------------~~~~--------- 414 (599)
+|..+|+++|.+|++.|+.++|+.+|++|. +.|+
T Consensus 453 ---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 453 ---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred ---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 244444444444444444444444444443 2221
Q ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 415 ---------------------VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 415 ---------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
.||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 45667788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccccccCCCCCC---------------
Q 007543 474 VWYKEME-SCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDD--------------- 537 (599)
Q Consensus 474 ~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~--------------- 537 (599)
++|+.|. +.|+.|+..+|++++.++.+.|++++|.+++++|. .+|+......++..+...+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999998 68999999999999999999999999999999983 4455544433443322111
Q ss_pred ----CCCCCCCCCcccCCCCCCC-----CCCCcchhhhhhhcCCCCcc-----eeeecCCcccccccccccccc
Q 007543 538 ----DDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 597 (599)
Q Consensus 538 ----d~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~-----a~a~~~~~~~~~~~~~~~~~~ 597 (599)
......+.++|...++|.+ ..+.+.+.++.++|+|+|.. .++-+..||+..+.|..|+.+
T Consensus 687 ~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 687 DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 1122234678889999987 46777789999999999974 344455799999999888754
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=497.94 Aligned_cols=463 Identities=20% Similarity=0.302 Sum_probs=381.6
Q ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 104 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 183 (599)
Q Consensus 104 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 183 (599)
.+...+..+...+++++|.++|+++...+.+.++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.|+.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455666777899999999999999877677899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc-------------------------
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE------------------------- 238 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------------------- 238 (599)
++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|++|.+.+
T Consensus 169 ~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999 45899999999999999999999999999997531
Q ss_pred -------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcC
Q 007543 239 -------KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 239 -------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g 308 (599)
+.++.||..+||.||++|+++|++++|.++|++|.+ +|.++||+++.+ .|+.++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 123455666677788888888888888888888754 578888888876 477888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 309 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.+ ||..+||+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888863 68888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g 467 (599)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888888888874 688888888888888888888
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccccccCCCCCCCCCCCCCCCc
Q 007543 468 DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNI 547 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~d~~~~~~~~i 547 (599)
++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.++.. ...+. .+.++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~---------------~L~~~ 537 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYV---------------VLLNL 537 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchH---------------HHHHH
Confidence 888888887765 467888888888888888888888888888876554431 11111 14567
Q ss_pred ccCCCCCCC-----CCCCcchhhhhhhcCCCCcc---eeeec--CCcccccccccccccc
Q 007543 548 YHDGDGDGD-----GDDNEDDAEETIACSGKEDE---LIFFN--GDHQRSQEGLHTLQTV 597 (599)
Q Consensus 548 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~e~~---a~a~~--~~~~~~~~~~~~~~~~ 597 (599)
|...++|.+ ..+.+.+.++.++|+|+|.. ..++. ..||+..+.|..|.++
T Consensus 538 y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 777888766 34666678888999999865 33444 4699999888877653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-24 Score=244.02 Aligned_cols=385 Identities=17% Similarity=0.163 Sum_probs=213.6
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
...++++.|.+.++.+.... +.+...+..+...|.+.|+.++|...|+++.+.+ +.+...+..++..|.+.|++++|
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 34455555555555554433 2344455555555555556666665555555443 22445555555555566666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
..+++++.+.. +.+..+|..+...+...|++++|...|+.+++.. +.+...+..+...|.+.|++++|..+|+++
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ----PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555432 2344555555556666666666666666555321 334445555555666666666666666555
Q ss_pred HHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007543 273 AERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (599)
.+.. +.+...+..+.. ..+++++|.++++.+.... +.+...+..+...+.+.|++++|...|+++...+ |+..
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 5432 112233333222 2455666666666665543 2344555555666666666666666666665542 3334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
++..+...+.+.|++++|...++++.+.. +.+...+..+...|...|+.++|...|+++.+.. +++..+++.+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55555666666666666666666655532 3455556666666666666666666666666544 345556666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 509 (599)
+.|+ ++|..+++++.+.. +-+..++..+...+...|++++|..+++++.+.+ +.+..++..+..++.+.|+.++|.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred hcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 6666 55666666665431 2234455566666666666666666666666643 3355566666666666666666666
Q ss_pred HHHhc
Q 007543 510 LLGNF 514 (599)
Q Consensus 510 ~~~~~ 514 (599)
+++++
T Consensus 893 ~~~~~ 897 (899)
T TIGR02917 893 ELDKL 897 (899)
T ss_pred HHHHH
Confidence 66655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-23 Score=235.16 Aligned_cols=389 Identities=14% Similarity=0.080 Sum_probs=235.5
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..++++.|.+.++.+.+.. +.+...+..+...+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|.
T Consensus 477 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 553 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAV 553 (899)
T ss_pred hCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3445555555555544432 2333444455555555555555555555555443 224555555555666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
.+|+++...++ .+...+..+...+...|++++|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.
T Consensus 554 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 628 (899)
T TIGR02917 554 AWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA----PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL 628 (899)
T ss_pred HHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66665555432 244455555666666666666666666665321 4455566666666666666666666666665
Q ss_pred HcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007543 274 ERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 350 (599)
Q Consensus 274 ~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (599)
+... .+...+..+.. ..+++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.+ +.+...
T Consensus 629 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 629 ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 5421 12222322222 2466666666666666543 2345566666666667777777777777666654 455566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+..+...+...|++++|...|+.+... .|+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.+
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 666666777777777777777776654 3444556666667777777777777777766654 3466677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANEL 510 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 510 (599)
.|++++|.+.|+++.+.. +++..++..+...+...|+ .+|+.+++++.+.. +-+..++..+..++...|++++|..+
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777553 3456677777777777777 66777777776632 33345566666777777777778777
Q ss_pred HHhccCCCC
Q 007543 511 LGNFNHPNN 519 (599)
Q Consensus 511 ~~~~~~~~~ 519 (599)
++++.+.++
T Consensus 860 ~~~a~~~~~ 868 (899)
T TIGR02917 860 LRKAVNIAP 868 (899)
T ss_pred HHHHHhhCC
Confidence 777765544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=192.85 Aligned_cols=308 Identities=16% Similarity=0.149 Sum_probs=230.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLFVE 220 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~ 220 (599)
....+...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999874 33677899999999999999999999999987543322 2467788889999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
.|++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 120 ~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------ 177 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG----DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------ 177 (389)
T ss_pred CCCHHHHHHHHHHHHcCC----cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH------------------
Confidence 999999999999997532 4567788899999999999999999998887653211000
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
.....+..+...+.+.|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+..
T Consensus 178 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 178 ----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 011235567777888888888888888887754 444567777888888888888888888888765322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 460 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (599)
....+++.++.+|...|+.++|...++++.+. .|+...+..++..+.+.|++++|.++++++.+. .|+...+..++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 22355677777888888888888888887765 355556677778888888888888888877754 57777777777
Q ss_pred HHHHh---cCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 461 DAYGK---NKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 461 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
..+.. .|+.+++..++++|.+.++.|++.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 76664 457778888888887766666654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-20 Score=191.23 Aligned_cols=313 Identities=14% Similarity=0.110 Sum_probs=251.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
.......+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.++............++..++..
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 33444556788999999999999998754 36678899999999999999999999999853110000113567888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
|.+.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDE---------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDV 163 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcC---------------------------------CcchHHHHHHHHHHHHHhchHHHHHHH
Confidence 99999999999999888753 134567889999999999999999999
Q ss_pred HHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 336 FEEMLDAGVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 336 ~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 164 AERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999988653332 2245677888899999999999999998753 33566788888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
.+......+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+..++
T Consensus 243 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~ 318 (389)
T PRK11788 243 QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGF 318 (389)
T ss_pred HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHH
Confidence 643333567889999999999999999999999875 57777778999999999999999999999988 47999888
Q ss_pred HHHHHHHhh---cCcHHHHHHHHHhccCCCCCCCccccc
Q 007543 492 NILLSLAKT---ADERNEANELLGNFNHPNNEPGINGLS 527 (599)
Q Consensus 492 ~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~ 527 (599)
..++..+.. .|+.+++..+++++.+....|+..+.+
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c 357 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRC 357 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEEC
Confidence 888876654 568899999999887655555555543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=170.15 Aligned_cols=370 Identities=14% Similarity=0.132 Sum_probs=276.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY-QII 214 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~l 214 (599)
.-..+|..+.+.+-..|++++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+.++ +.|+.... ..+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 44678888999999999999999999999987432 678999999999999999999999988877 45555433 445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHhcccC
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ--QSTVTYNSLMSFET 292 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~ 292 (599)
...+-..|++++|...|.+.++.. +-=...|+.|...+-.+|++..|+..|++..+.... +--.....++...+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~q----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhC----CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 555666888999998888887642 233467888888888889999999988888764211 11122333455567
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
.+++|...|....... +-..+.+..+...|...|.++.|+..|++.++.. +.=...|+.|..++-..|++.+|.+.++
T Consensus 267 ~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred cchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 7788887777776643 2244667777777888888888888888887763 3335678888888888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
+..... +....+.+.|...|...|.+++|..+|....+.. +--....+.|...|-.+|++++|..-|++.+. +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 877652 3345677788888888888888888888877643 22345677888888888888888888888774 5677
Q ss_pred -HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 453 -QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 453 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
...|+.+...|-..|+.+.|.+.+.+.+. +.|.- ..++.|.+.+...|++.+|..-++...+.+++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 45888888888888888888888888877 55654 56778888888888888888888886655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-17 Score=179.01 Aligned_cols=332 Identities=9% Similarity=-0.008 Sum_probs=197.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
++..+.+.|++++|..+++........ +...+..++.++...|++++|++.|+++....+. +...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Confidence 334444445555555555544443221 2333334444444455555555555555443222 33344444445555555
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HhcccCCHHHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS-LMSFETNYKEVSKIYD 302 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~~~~~~a~~~~~ 302 (599)
+++|...+++++... +.+...+..+...+...|++++|...++.+......+....++. .+...|++++|...++
T Consensus 126 ~~~Ai~~l~~Al~l~----P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 126 YATVADLAEQAWLAF----SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554321 22334444455555555555555555544433321111111111 1112345555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ----ARTVFKCMRRDR 378 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 378 (599)
.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...|...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55444322334445555677888888888888888888765 5567777888888888888875 788888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHH
Q 007543 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFT 457 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~ 457 (599)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.|+++.+. .|+.. .+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 3456778888888888888888888888888764 335666777888888888899888888888764 35533 344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
.+..++...|++++|...|+++.+ ..|+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~--~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQ--ARASH 385 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hChhh
Confidence 456678888889999888888877 34443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-16 Score=182.17 Aligned_cols=359 Identities=14% Similarity=0.057 Sum_probs=194.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTY------------ 211 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~------------ 211 (599)
...+...|++++|+..|++..+.. +.+...+..|...|.+.|++++|+..|++..+..+... ...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677888888888888888764 23677888888888888888888888888877544321 1111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM--- 288 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll--- 288 (599)
......+.+.|++++|++.|+++++.. +.+...+..+...+...|++++|++.|++..+.... +...+..+.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122345677888888888888888643 455667778888888888888888888888765321 121211111
Q ss_pred ------------------------------------------cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 289 ------------------------------------------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 289 ------------------------------------------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
...+++++|.+.+++..+... -+...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 013556666666666665432 2344555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------------------------
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------------------------- 378 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------------- 378 (599)
|++++|...++++.+.. +.+...+..+...+...|+.++|+..++.+....
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 66666666666665542 2233333323233333444444444443322110
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 379 -----------CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 379 -----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|++++|.+.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 12222333344444444455555555555444432 223444444445555555555555555544432
Q ss_pred CCCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 448 GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF--PP---DQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 448 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.| +..++..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|...+++.
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 233344444444445555555555554443210 11 1122333344444455555555555444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-16 Score=172.13 Aligned_cols=390 Identities=13% Similarity=0.062 Sum_probs=264.2
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+-..++++.|.+.++.+.+.. +++..|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344567777777777766543 345666777777777777777777777777653 2255677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH---------------------
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--------------------- 250 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------------- 250 (599)
|+..|......+...+.. ...++..+... .+.......++..... .|......
T Consensus 213 A~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETKPEN-LPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcCCCC-CCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777666554432221221 11112111111 1111111111111000 01100000
Q ss_pred ------HHHHHH------HHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCH
Q 007543 251 ------MMIYMY------KKAGGYEKARKLFALMAERG-VQQST-VTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDV 313 (599)
Q Consensus 251 ------~li~~~------~~~g~~~~A~~~~~~m~~~g-~~~~~-~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~ 313 (599)
.++..+ ...+++++|.+.|++..+.+ ..|+. ..++.+-. ..|++++|...++...... +.+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 001101 12367899999999998765 23332 23333222 3689999999999998864 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 393 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 393 (599)
..|..+...+...|++++|+..|++.++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998875 5567889999999999999999999999998763 34567788888899
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH------HHHHHHHHHHhcC
Q 007543 394 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT------IFTTIMDAYGKNK 467 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g 467 (599)
.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|.+.|++..+..-..+.. .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988754 3467889999999999999999999999988642111111 1222223344579
Q ss_pred CHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCC
Q 007543 468 DFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHP 517 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 517 (599)
++++|.+++++..+. .|+. ..+..+...+...|++++|..++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999874 4544 56888899999999999999999986544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-16 Score=175.57 Aligned_cols=406 Identities=12% Similarity=0.087 Sum_probs=264.9
Q ss_pred CCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007543 97 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 176 (599)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 176 (599)
..+..+..+.--+......++.+.|.+++..+.... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 334444444444444455677777777776665422 3455567788888888888888888888877653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++++.. +.+...+..+...+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l 160 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 77778888888888888888888776332 445 7777777888888888888888887542 44556666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHhcc--------cCCH---HHHHHHHHHHHHc-CCCCCHH-HH-
Q 007543 257 KKAGGYEKARKLFALMAERGVQQST------VTYNSLMSF--------ETNY---KEVSKIYDQMQRA-GLQPDVV-SY- 316 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~--------~~~~---~~a~~~~~~m~~~-g~~~~~~-~~- 316 (599)
...|..++|+..++.... .|+. .....++.. .+++ ++|++.++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 777888888877765543 1221 001111110 1123 5677777777753 1122221 11
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 007543 317 ---ALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTM 389 (599)
Q Consensus 317 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l 389 (599)
...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++....... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 11133445668888888888888776521 222 22224667888888888888888876542111 12445566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-----------VPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +-+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 6677888888888888888775421 123 2345566777788888888888888887642 344667
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
+..+...+...|++++|++.+++..+ +.|+. ..+......+...|++++|..+++++.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888888888888888888888877 44554 555566667788888888888888776443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-18 Score=165.19 Aligned_cols=397 Identities=16% Similarity=0.190 Sum_probs=319.8
Q ss_pred hHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 102 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME 181 (599)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 181 (599)
+...+....++-+-+++.+|.+....+-.++ +.+......+-..+.+..+.+....--....+.. +.-..+|..+..
T Consensus 48 ~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN 124 (966)
T KOG4626|consen 48 SDDRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLAN 124 (966)
T ss_pred chhHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHH
Confidence 3446666677777789999888765554443 2333444455677778888887766555555442 225789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH-HHHHHHHHHHcC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM-FHMMIYMYKKAG 260 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g 260 (599)
.+-..|++++|+.+++.+++..++ ....|..+..++...|+.+.|.+.|...+.. .|+... .+.+.......|
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql-----nP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL-----NPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-----CcchhhhhcchhHHHHhhc
Confidence 999999999999999999986544 6779999999999999999999999999853 565544 344666677789
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHH---HHHhcccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQS-TVTY---NSLMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~-~~~~---~~ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
++++|...|-+..+.. |. .+.| ..++...|+...|+..|++..+.. |+ ...|-.|...|...+.++.|...
T Consensus 199 rl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred ccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 9999999998887652 32 1223 334556789999999999998864 43 46789999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
|.+..... +...+.+..+...|...|.++-|+..+++..+. .|+ +..|+.|..++-..|+..+|...+++.....
T Consensus 275 Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 275 YLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 99987763 445678888888999999999999999999875 444 5789999999999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKN 492 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~ 492 (599)
+-...+.+.|...|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..+++.++ +.|+. ..++
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 33567889999999999999999999999885 4566 56889999999999999999999999998 88887 5688
Q ss_pred HHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 493 ILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 493 ~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
.+...|...|+++.|.+.+.+....++
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999765554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-16 Score=179.37 Aligned_cols=357 Identities=11% Similarity=0.066 Sum_probs=257.4
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH------------HH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP-SVVSHT------------AL 179 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~------------~l 179 (599)
...++++.|...++.+.+.. +.+...+..|...|.+.|++++|+..|++..+..... ....|. .+
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34678889999998888765 4567888899999999999999999999988764221 112222 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH--------
Q 007543 180 MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM-------- 251 (599)
Q Consensus 180 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------- 251 (599)
...+.+.|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++++.. +.+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhc
Confidence 44567889999999999999886543 66677788889999999999999999988642 222333222
Q ss_pred ----------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHH---HhcccCC
Q 007543 252 ----------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQST-VTYNS---LMSFETN 293 (599)
Q Consensus 252 ----------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~---ll~~~~~ 293 (599)
+...+...|++++|++.|++..+.. |+. ..+.. +....|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCC
Confidence 2344556788899999998888753 432 22222 2234688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------------------------------- 342 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 342 (599)
+++|...++++.+... .+...+..+...+.+.++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999998877532 23333322323333444444444443322100
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 343 --------GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 343 --------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..|...|+.++|++.++.+.+..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 124556677888899999999999999999998863 4568889999999999999999999999888653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KP---NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+.+..++..+..++...|++++|.++++++....- .| +...+..+...+...|++++|+..|++...
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33566777888999999999999999999986421 22 234667778889999999999999999975
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-16 Score=166.99 Aligned_cols=356 Identities=10% Similarity=0.020 Sum_probs=257.0
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 188 (599)
+..+...++...|..+++.+.... +-+......++......|++++|...|+++..... .+...|..+...+.+.|+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 334445677888888877777664 34455566666777778999999999998888742 367788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 189 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+++|++.|+++.+..+. +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 126 ~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 126 YATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999988888875332 56677788888888899999988888776432 2333344333 347788899999888
Q ss_pred HHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHH
Q 007543 269 FALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEEMLD 341 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~---ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~ 341 (599)
++.+.+....++...+.. .+...+++++|...++...... +.+...+..+...|.+.|++++ |...|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888776543233332222 2234688888988888888765 3456778889999999999885 8999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-IT 420 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~ 420 (599)
.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+++...+ |+. ..
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~ 354 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKW 354 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHH
Confidence 64 5567788999999999999999999999988753 3356677778889999999999999999988763 443 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHH----HHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIF----TTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+..+..++...|+.++|.+.|++..+.. |+ ...| ..+-.++...+...+...+..++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR--ASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 4456778889999999999999988642 22 2223 333444444555554445666653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-15 Score=163.67 Aligned_cols=361 Identities=12% Similarity=0.023 Sum_probs=258.0
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
....+..+++++.|.+.++.+.+.. +.+...+..+..+|...|++++|..-|......+...+. ....++..+....
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 242 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKF 242 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHH
Confidence 3344667899999999999988775 456778889999999999999999999877655322222 2222222222111
Q ss_pred CHHHHHHHHHHHHhCCCC--CCHHHHHH---------------------------HHHH------HHHcCCHHHHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPR--PSALTYQI---------------------------ILKL------FVEANKFKEAEEVFM 232 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~--p~~~t~~~---------------------------ll~~------~~~~g~~~~A~~~~~ 232 (599)
...++...+ +..+. |....... .+.. ....+++++|.+.|+
T Consensus 243 a~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~ 318 (615)
T TIGR00990 243 AESKAKEIL----ETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE 318 (615)
T ss_pred HHHHHHHHH----hcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 112222221 11110 11000000 0110 012367899999999
Q ss_pred HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH---hcccCCHHHHHHHHHHHHHcC
Q 007543 233 TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS-TVTYNSL---MSFETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l---l~~~~~~~~a~~~~~~m~~~g 308 (599)
..++.+. ..+.+...++.+...+...|++++|+..|++..+.. |+ ...|..+ ....+++++|...|+...+..
T Consensus 319 ~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 319 KALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9986421 113345678888999999999999999999998753 43 2233322 234689999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 309 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
+.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+. .+.+...++.
T Consensus 396 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~ 472 (615)
T TIGR00990 396 -SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNY 472 (615)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHH
Confidence 3467889999999999999999999999999875 556778888999999999999999999998875 2446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVI------TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
+...+...|++++|.+.|++..+.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..+...
T Consensus 473 lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~ 551 (615)
T TIGR00990 473 YGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQL 551 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 9999999999999999999988753221111 12222333445799999999999988653 2335578999999
Q ss_pred HHhcCCHhHHHHHHHHHHhC
Q 007543 463 YGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~ 482 (599)
+.+.|++++|+++|++..+.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999873
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-15 Score=166.60 Aligned_cols=409 Identities=14% Similarity=0.093 Sum_probs=302.8
Q ss_pred hhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh
Q 007543 71 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK 150 (599)
Q Consensus 71 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 150 (599)
.-|..+..-..+..+|..++.... ...+.+..........+...+++..|.++++.+.... +.+...+..+..++..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~-~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYR-VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 457777776677777777776432 2344554445555556678899999999999988765 4567778899999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
.|++++|...+++..+.. +.+.. |..+..++...|++++|+..++++.+..+. +...+..+..++...+..+.|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999999998873 33666 999999999999999999999999987554 566667788888899999999999
Q ss_pred HHHhHhccCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH-------HHH
Q 007543 231 FMTLLDEEKSPLKPDQ------KMFHMMIYMYK-----KAGGY---EKARKLFALMAER-GVQQSTV-TY-------NSL 287 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~-------~~l 287 (599)
++.+.. .|+. .....++..+. ..+++ ++|+..++.+.+. ...|+.. .+ ...
T Consensus 173 l~~~~~------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 173 IDDANL------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHhCCC------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 987752 2221 11222233222 22334 7788889888854 2223221 11 111
Q ss_pred hcccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCC
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGM 363 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~ 363 (599)
+...+++++|...|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 23458899999999999987632 332 22235778999999999999999987653111 13456667778899999
Q ss_pred HHHHHHHHHHHHhCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 364 VDQARTVFKCMRRDR-----------CSPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+++|..+++.+.... -.|+ ...+..+...+...|+.++|+++++++.... +-+...+..+...+.
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQ 404 (765)
T ss_pred HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 999999999998752 1123 2345667778999999999999999998765 457888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
..|++++|++.+++..+. .|+ ...+......+.+.|++++|..+++++.+ ..|+......+-..
T Consensus 405 ~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 405 ARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred hcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 999999999999999975 455 66777888889999999999999999998 56776654444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-14 Score=154.29 Aligned_cols=421 Identities=13% Similarity=0.055 Sum_probs=270.1
Q ss_pred HhhhchHHHHHHHhhhcCCCCChHHHHHH--HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh-cCChHH
Q 007543 80 IEEVGSAVAVLRSERTRGQPLPKDLVLGT--LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK-QGDFNK 156 (599)
Q Consensus 80 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 156 (599)
|.+.+.+..++. ... ..+.|...++.. ...+..+++|+.+.+.+..+.+.+ +.+......|...|.. .++ +.
T Consensus 160 y~q~eqAl~AL~-lr~-~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 160 LAQLPVARAQLN-DAT-FAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhHHHHHHHHH-Hhh-hCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HH
Confidence 555566666665 221 222222322222 333556788888888888888876 4555666677778887 466 77
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH--------------------
Q 007543 157 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIIL-------------------- 215 (599)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll-------------------- 215 (599)
|..+++... +.+...+..++..|.+.|+.++|.++++++...-.. |...++.-++
T Consensus 235 a~al~~~~l----k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQGI----FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchhc----ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 777765422 347888889999999999999999998887543221 2222222211
Q ss_pred ----------HHHH---------------------------------------------------------------HcC
Q 007543 216 ----------KLFV---------------------------------------------------------------EAN 222 (599)
Q Consensus 216 ----------~~~~---------------------------------------------------------------~~g 222 (599)
..+. +.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~ 390 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG 390 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 1122 234
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHH------------HH----------HHHH-cC
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG---YEKARKL------------FA----------LMAE-RG 276 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~------------~~----------~m~~-~g 276 (599)
+.++|.++|+........+ ..+....+.++..|.+.+. ..+|..+ .. .... .+
T Consensus 391 ~~~~a~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDA-RLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred cHHHHHHHHHHhcCCCccc-ccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 4444444444444321111 1233334455555555544 2222222 00 0000 01
Q ss_pred CCC---CHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 277 VQQ---STVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 277 ~~~---~~~~~~~ll~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
..| +...|..+-. ..++..+|...+.+.... .|+......+...+.+.|++++|...|+++... +|+...+
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 111 1212211111 124566677766666654 355544444555557889999999999987654 4555566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
..+...+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 677788888999999999999888764 233333334444555669999999999999876 46788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
|++++|...|++..... +.+...+..+..++...|++++|+..+++..+.. |-+...+..+..++...|++++|...+
T Consensus 623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998763 3346688888899999999999999999998832 335567888999999999999999999
Q ss_pred HhccCCCC
Q 007543 512 GNFNHPNN 519 (599)
Q Consensus 512 ~~~~~~~~ 519 (599)
++..+..+
T Consensus 701 ~~Al~l~P 708 (987)
T PRK09782 701 RLVIDDID 708 (987)
T ss_pred HHHHhcCC
Confidence 99765554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-13 Score=149.94 Aligned_cols=434 Identities=12% Similarity=0.108 Sum_probs=304.2
Q ss_pred hHHHHHHHHhh--hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q 007543 72 NWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG 149 (599)
Q Consensus 72 ~~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 149 (599)
.|...+..+.+ ...|...|+. ..+..+..+..+...+..+...++..+|..+++...... +........+...|.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~q-aL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQE-ESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHH-HHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHH
Confidence 34444444432 3466666663 333334432233344444556788999999888877221 333344445577899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
..|++++|.++|+++.+.... +...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999988543 5777888889999999999999999999775 4555556555555555677767999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------HHHHhcc--------cCC--
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT------YNSLMSF--------ETN-- 293 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~------~~~ll~~--------~~~-- 293 (599)
.++++++.. +.+...+..+...+.+.|-...|.++..+-... +.+...- ...++.. ..+
T Consensus 191 ~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 191 ASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999998753 556778888999999999999998777653321 1111100 1111110 112
Q ss_pred -HHHHHHHHHHHHHc-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 294 -YKEVSKIYDQMQRA-GLQPDV-VS----YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 366 (599)
Q Consensus 294 -~~~a~~~~~~m~~~-g~~~~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 366 (599)
.+.++.-++.+... +..|.. .. ..-.+-++.+.|++.++++.|+.+...+.+.-..+-..+.++|...++.++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555655542 222322 22 223455778899999999999999988866556688889999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------------CCCHH-HHHHHHHH
Q 007543 367 ARTVFKCMRRDR-----CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-------------VPNVI-TYGTLIKG 427 (599)
Q Consensus 367 A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li~~ 427 (599)
|..+++++.... ..++......|.-+|...+++++|..+++.+.+... .||-. .+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986642 233444467888999999999999999999987321 12222 24456777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 506 (599)
+...|++.+|++.++++.... +-|......+.+.+...|.+.+|++.++.+.. +.|+. .+......++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence 888999999999999998653 55788999999999999999999999977776 45655 556677788888999999
Q ss_pred HHHHHHhccCCCC
Q 007543 507 ANELLGNFNHPNN 519 (599)
Q Consensus 507 A~~~~~~~~~~~~ 519 (599)
|..+++++....+
T Consensus 503 A~~~~~~l~~~~P 515 (822)
T PRK14574 503 MELLTDDVISRSP 515 (822)
T ss_pred HHHHHHHHHhhCC
Confidence 9999877654444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-13 Score=150.04 Aligned_cols=428 Identities=10% Similarity=0.020 Sum_probs=271.5
Q ss_pred cccchhhHHHHHHHHhhhchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q 007543 66 DEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLI 145 (599)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 145 (599)
++.++..+..+...+...|...+++.........-|.+..+..+. ..+++++.|.++++.+.+.. +.+...+..+.
T Consensus 74 dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L--a~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 74 VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL--AAIPVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH--HHhccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 344566777777877766644443332111122233333333322 33478888889998888775 45566666666
Q ss_pred HH--------HHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 146 TA--------YGKQGDFNKAEKVLSFMNKKGYAPSVVSHT-ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 146 ~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
.. |.+. ++|.+.++ .......|+..+.. .+.+.|.+.|++++|++++.++.+.++. +..-...+..
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 65 6665 44444444 33322233444444 4488899999999999999999887654 4555666666
Q ss_pred HHHH-cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhc-----
Q 007543 217 LFVE-ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMS----- 289 (599)
Q Consensus 217 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~----- 289 (599)
+|.. .++ +.+..+++.. +..+...+..+++.|.+.|+.++|.++++++...-.. |...+|--++.
T Consensus 225 ay~q~l~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHhhCH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 7777 366 7777775432 2467778888888899999999888888876533111 11111111110
Q ss_pred --------------------------------------------------------------------------------
Q 007543 290 -------------------------------------------------------------------------------- 289 (599)
Q Consensus 290 -------------------------------------------------------------------------------- 289 (599)
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence
Q ss_pred -----------ccCCHHHHHHHHHHHHHc-C-C-----------------------------------------------
Q 007543 290 -----------FETNYKEVSKIYDQMQRA-G-L----------------------------------------------- 309 (599)
Q Consensus 290 -----------~~~~~~~a~~~~~~m~~~-g-~----------------------------------------------- 309 (599)
..|+.++|.++++..... + -
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 012233333333333220 0 0
Q ss_pred ---------------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 310 ---------------QP--DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 310 ---------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++ +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11 22333333333333 5555666666666554 3554443344455567888999988888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
++... +|+...+..+...+.+.|+.++|...++...+.. +++...+..+...+.+.|++++|...+++..+. .|+
T Consensus 534 ka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~ 608 (987)
T PRK09782 534 KISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APS 608 (987)
T ss_pred HHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC
Confidence 87654 4555566677778888899999999998888764 333444444444555669999999999998865 577
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 453 QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++|...+++..+..+.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888999999999999999999999999884 454 456777778899999999999999987655443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-12 Score=139.07 Aligned_cols=407 Identities=12% Similarity=0.056 Sum_probs=292.3
Q ss_pred HHHHHHhh---hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 007543 75 RLMNQIEE---VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQ 151 (599)
Q Consensus 75 ~~~~~~~~---~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 151 (599)
.++..+.. ..+|...++... ...+.+..........+...++++.|.++++.+.+.. +.++..+..++..|...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhc
Confidence 44444433 445666665332 2233444444444455677899999999999999876 45677788889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 231 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 231 (599)
++.++|++.++++... .|+...+-.++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999987 456666655555555567776799999999997543 6777888899999999999999876
Q ss_pred HHhHhccCCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHc-CCCCC-HHHHH-------HHh
Q 007543 232 MTLLDEEKSPLKPDQKMF--HMMIYMYK---------KAGG---YEKARKLFALMAER-GVQQS-TVTYN-------SLM 288 (599)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~~~-~~~~~-------~ll 288 (599)
.+-. .-+.+...-+ ...+.-.. ...+ .+.|+.-++.+... +..|. ...|. ..+
T Consensus 227 ~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 227 KENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 6542 1122221111 00111111 1122 34455555665542 22232 22221 123
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCC
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-----VRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~g~ 363 (599)
...++.+++++.|+.+...+.+....+--.+.++|...+++++|+.+|+++.... ..++......|..+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 3478999999999999998866566788899999999999999999999997643 12344446789999999999
Q ss_pred HHHHHHHHHHHHhCC-------------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 364 VDQARTVFKCMRRDR-------------CSPDI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+++|..+++++.+.. ..||- ..+..++..+...|+..+|++.++++.... +-|......+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 999999999998731 11222 234456678899999999999999998775 559999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
..|.+.+|++.++..... .|+ ..+....+.++...|++++|..+.+.+.+ ..|+......|-.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 462 ARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred hcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 999999999999777644 555 56778888899999999999999999988 5677665444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-13 Score=137.52 Aligned_cols=402 Identities=13% Similarity=0.148 Sum_probs=278.3
Q ss_pred HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 007543 110 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-- 187 (599)
Q Consensus 110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 187 (599)
..+...|+++.|...+....+... ....-.+.-|.++|.+.|+++.|...|+...+.. +.+..+...|...|...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~-d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADN-DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCC-CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhh
Confidence 344556667776666655544331 0112233456777777777777777777776652 334556666666666654
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc-cCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 188 --RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 188 --~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..++|..++.+..+.- ..|...|..+...+-...-+. ++..|..+++. ...+-.+.....|.+...+...|++++
T Consensus 393 ~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 4566666666665543 235566666655554443333 35555544421 112224666788999999999999999
Q ss_pred HHHHHHHHHHc---CCCCCH-------HHHHH--HhcccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 007543 265 ARKLFALMAER---GVQQST-------VTYNS--LMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEE 331 (599)
Q Consensus 265 A~~~~~~m~~~---g~~~~~-------~~~~~--ll~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~ 331 (599)
|...|+..... -..++. ..||. +....++...|.+.|..+.+.. |. +..|.-+.......+...+
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHH
Confidence 99999988765 122232 23443 2334678899999999999863 43 3334444434444577889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCC
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVN------------ASD 398 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~------------~g~ 398 (599)
|...+++..... ..++..++.+.+.+.+...+..|..-|+.....- ..+|+.+..+|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 999999988765 6677788888889999999999988777665542 23677777777775553 256
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
.++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+.. .-+..+|..+.++|...|+|..|++.|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998876 4488888999999999999999999999999763 23556899999999999999999999998
Q ss_pred HHhCCC-CCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 479 MESCGF-PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 479 m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
..+.-. .-+......|..++.+.|++.+|.+.+.......+.
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 866433 335567888999999999999999998886655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-11 Score=117.21 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHhh--hchHHHHHHHhhhcCCCCChHHHHHHHH--HhhhcccHHHHHHHHHHHHHcCC------------
Q 007543 70 KKNWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLV--RLKQLKKWNVVSEVLEWLRIQSW------------ 133 (599)
Q Consensus 70 ~~~~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~a~~~~~~~~~~~~------------ 133 (599)
+.+=|.+...+.+ ..++.-+.+.++.++..+++..-...+. .+....+.. ..-.+|......
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~--~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVP--FAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCc--chhHHHHhhccccccccccccccc
Confidence 4555666665543 3456666676777777777654333322 111111111 111122222111
Q ss_pred ---------CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 134 ---------WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 134 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
.+-++.+|..+|.++||-...+.|.+++++......+.+..++|.+|.+-.-.. -.++..+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 122334455555555555555555555555544444445555555544322111 1344455555555
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH----HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEE----VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 262 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (599)
.||..|+|+++++..+.|+++.|.+ ++.+|. ..|+.|...+|..+|..+++-++.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK---eiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK---EIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH---HhCCCcchhhHHHHHHHhcccCCc
Confidence 5555555555555555554443332 223332 334455555555555555444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.2e-11 Score=112.54 Aligned_cols=398 Identities=14% Similarity=0.123 Sum_probs=269.7
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH--hcCChH-HHHHHHHHHHhCC----------------
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG--KQGDFN-KAEKVLSFMNKKG---------------- 168 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~g---------------- 168 (599)
.+.++...+..+.+.-+++.++..+ .+.++..-..|...-+ ...++- .-++-|-.|...|
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~ 199 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL 199 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH
Confidence 3445555667777777888887665 3555554444333222 222211 1122233333222
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 007543 169 ---YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 245 (599)
Q Consensus 169 ---~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 245 (599)
.+.+..++..||.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...++..+|+. ..+.||
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis---qkm~Pn 272 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMIS---QKMTPN 272 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHH---hhcCCc
Confidence 13367899999999999999999999999998888888999999998764322 23667777773 456899
Q ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHhcccC----CHHHHHHHHHHHHH----cCCC---
Q 007543 246 QKMFHMMIYMYKKAGGYEK----ARKLFALMAERGVQQSTVTYNSLMSFET----NYKEVSKIYDQMQR----AGLQ--- 310 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~----~~~~a~~~~~~m~~----~g~~--- 310 (599)
..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..++.... ..+.+..+..++.. ..++
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 5677888999999999999999887532 22335544444443 2222
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007543 311 -PDVVSYALLINAYGKARREEEALAVFEEMLDAG----VRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 382 (599)
Q Consensus 311 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (599)
.|...|..-+..|.+..+.+.|.++..-+.... +.|+ .+-|..+....|+....+.-...|+.|.-.-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 245667888889999999999998877664321 2233 22467778888999999999999999998888899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CH--------------------HHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NL--------------------EKMMEIY 441 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------------------~~A~~~~ 441 (599)
..+...++.+..-.|.++-.-++|.+++..|...+...-.-++..+++.. .. +....--
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999888775544444444444444433 10 1111112
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHH---HHHHHHhhcCcHHHHHHHHHhcc
Q 007543 442 DKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP-PDQKAKN---ILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 442 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~---~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+|.+.. -.....+...-.+.+.|+.++|.+++....+.+-. |-....+ -+.+..........|...++-+.
T Consensus 513 ~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 513 IRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2333333 33455677777788999999999999888654322 2222333 44556667777888887777764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-12 Score=123.12 Aligned_cols=400 Identities=16% Similarity=0.198 Sum_probs=238.4
Q ss_pred HHHHHHHHhhhc----ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------H
Q 007543 104 LVLGTLVRLKQL----KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS------V 173 (599)
Q Consensus 104 ~~~~~l~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~ 173 (599)
.++.++..+... .-..+|+..++.+.+...++.....-..+.+.|.+...+.+|++++...... .|+ +
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~ri 276 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRI 276 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHH
Confidence 345555443322 2345666666666665544332222224556667777777777777665544 233 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---------CCCCCC
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE---------KSPLKP 244 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~ 244 (599)
...+.+.-.+.+.|++++|+.-|+...+. .|+..+-..|+-++...|+.++..+.|.+++... +..-.|
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp 354 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDP 354 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCc
Confidence 23444445566777777777777766553 3555544444445555666666666666665321 000011
Q ss_pred CHHHHHH---------------------------------------------------------------HHHHHHHcCC
Q 007543 245 DQKMFHM---------------------------------------------------------------MIYMYKKAGG 261 (599)
Q Consensus 245 ~~~~~~~---------------------------------------------------------------li~~~~~~g~ 261 (599)
+....|. -..-|.+.|+
T Consensus 355 ~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d 434 (840)
T KOG2003|consen 355 DDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGD 434 (840)
T ss_pred chHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccC
Confidence 1111110 1223566777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH-----hc----------------------------------ccCCHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSL-----MS----------------------------------FETNYKEVSKIYD 302 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~l-----l~----------------------------------~~~~~~~a~~~~~ 302 (599)
++.|.++++-+.+..-+.....-+.| +. +.|++++|.+.|+
T Consensus 435 ~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 435 IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 77777777666543211111111110 00 1245667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 382 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (599)
+.....-......|| +.-.+-..|+.++|++.|-++... +..+..+...+.+.|-...+...|++++.+... -++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCC
Confidence 666542211112222 223455667777777777665432 134556666677777777777777777766543 34567
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
+.....|...|-+.|+-..|.+.+-+--.. ++-|..+...|...|....-+++++.+|++..- +.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 788888888888888888888766543332 456778888888888888888888888888763 57898888888765
Q ss_pred H-HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 463 Y-GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 463 ~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
| .+.|++..|..+++...++ ++.|.....-|+..|...| ..++.++-+++.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~key~~kle 720 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAKEYADKLE 720 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHHHHHHHHH
Confidence 5 5689999999999888765 6778888888888888777 445555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-11 Score=123.42 Aligned_cols=361 Identities=13% Similarity=0.202 Sum_probs=238.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 225 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 225 (599)
+...-.|++++|.+++.++++... .+...|.+|...|-+.|+.+++...+-..-..++. |...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHH
Confidence 333334788888888888777643 36777888888888888888777766554444333 5567777777777778888
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-------cCCHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-------ETNYKEVS 298 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-------~~~~~~a~ 298 (599)
+|.-.|.++++.. +++...+-.-+..|-+.|+...|..-|.++.......|..-+..++.. .++-+.|.
T Consensus 225 qA~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 225 QARYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888888777543 556555556667777778888888887777765432222222222221 22335566
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------
Q 007543 299 KIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY-------------------------- 351 (599)
Q Consensus 299 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------------------------- 351 (599)
+.++..... +-..+...++.++..|.+...++.|......+......+|..-|
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 666555542 12234456778888888888888888887777652222222211
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
-.+.-++......+....+........ ..-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 112223333333333333444444444 333556788888999999999999999999887655556778889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhh
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME--------SCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~ 500 (599)
..|.+++|.+.|++.+.. .|+ ...-.+|...+.+.|+.++|.+.+..+. ..+..|+..........+..
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999998864 344 5566778888899999999999998853 23455666666666777888
Q ss_pred cCcHHHHHHHHHhc
Q 007543 501 ADERNEANELLGNF 514 (599)
Q Consensus 501 ~g~~~~A~~~~~~~ 514 (599)
.|+.++-......+
T Consensus 539 ~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 539 VGKREEFINTASTL 552 (895)
T ss_pred hhhHHHHHHHHHHH
Confidence 88887755544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-09 Score=109.65 Aligned_cols=372 Identities=12% Similarity=0.129 Sum_probs=290.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
..+|..-.+.|.+.+.++-|+.+|....+- ++-+...|...+..--..|..++-..+|++....-+ -....|....+.
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHH
Confidence 346667778888888889999999888775 344677888887777778888998899999887643 366677777888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHhcccCCH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN---SLMSFETNY 294 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~ll~~~~~~ 294 (599)
+...|+...|..++..+.+.. +.+...|-+-+........++.|..+|.+....+ |+...|. .+....++.
T Consensus 594 ~w~agdv~~ar~il~~af~~~----pnseeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN----PNSEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC----CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhH
Confidence 888899999999999888643 4567888888888899999999999998887654 4444433 344457889
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 295 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 374 (599)
Q Consensus 295 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (599)
++|.+++++..+.- +--...|..+...+-+.++++.|...|..-.+. ++..+-.|-.|...--+.|.+-+|..+++..
T Consensus 668 eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 99999998888763 223356788888888889999998888776554 3556667888888888888999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 375 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 375 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
..++ +.+...|-..|..-.+.|+.+.|..++.+..+. ++.+...|..-|....+.++-......+++ +.-|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCch
Confidence 7654 557788999999999999999999998888765 355677788778777777765544444443 345777
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
+..++...+....+++.|.++|.+..+ +.||. .+|.-+...+.++|.-+.-.++++++....+.-|..|..+
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 888888889999999999999999988 45655 6788889999999999999999999887777777777643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-11 Score=121.57 Aligned_cols=291 Identities=13% Similarity=0.119 Sum_probs=186.4
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTAL-MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
.|+++.|++.+....+.+ ++...+..+ .....+.|+++.|.+.+.++.+....+...........+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877652 233333333 45558899999999999999874333222222244678899999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~ 309 (599)
.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. .... ..
T Consensus 175 ~l~~~~~~~----P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~-----------------l~---- 228 (398)
T PRK10747 175 GVDKLLEVA----PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAM-----------------LE---- 228 (398)
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHH-----------------HH----
Confidence 999998643 567788899999999999999999999999886543211 1100 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +|+.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 012223333333334445555555554332 1445666666677777777777777777666653 3444211 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
+.+....++.+++++..+...+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+..++.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 233334466677777776666553 235555666667777777777777777776653 56666666677777777777
Q ss_pred hHHHHHHHHHH
Q 007543 470 DSAVVWYKEME 480 (599)
Q Consensus 470 ~~A~~~~~~m~ 480 (599)
++|.+++++..
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-10 Score=106.10 Aligned_cols=400 Identities=12% Similarity=0.119 Sum_probs=299.9
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.+....|..+++.+...- |--...|.--+.+=-..|++..|+++|+...+. .|+..+|++.|..=.+-..++.|..
T Consensus 120 nk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred hhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 456778888888877653 112234555666667789999999999998885 7999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++.+- +.|+..+|.-..+.-.+.|....|..+|+.+++.-. .-..+...+++....-.++..++.|.-+|+-..+
T Consensus 196 IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 196 IYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999976 679999999999999999999999999999986311 1122344566666666778889999999988876
Q ss_pred cCCCC-CHHHHHHHhcc---cCCHHHHHH--------HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 275 RGVQQ-STVTYNSLMSF---ETNYKEVSK--------IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 275 ~g~~~-~~~~~~~ll~~---~~~~~~a~~--------~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
.-.+. ....|...... .|+...... -|+.+.+.+ +.|-.+|--.+..-...|+.+...++|++.+..
T Consensus 273 ~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 273 HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 52221 13344444443 444322222 244455543 457778888888888889999999999999876
Q ss_pred CCCCCHH--HHHH--------HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 007543 343 GVRPTHK--AYNI--------LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY----VNASDMEGAEKFFRR 408 (599)
Q Consensus 343 g~~~~~~--~~~~--------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~ 408 (599)
++|-.. .|.. .+-.-....+++.+.++|+..++ -++....||.-+--.| .++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 355321 2222 22222356889999999999887 4566667766555444 467899999999998
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC
Q 007543 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD 487 (599)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~ 487 (599)
.+ |..|-..+|...|..=.+.++++.+.++|++.++.+ +-|-.+|......=...|+.+.|..+|.-+++.. +...
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 76 568999999999999999999999999999999874 4457799999988899999999999999998743 2223
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 488 QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 488 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
...|.+.++.-...|.++.|+.+++.+.+...... .|++.
T Consensus 507 ellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 507 ELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 35688888888899999999999999876655433 55544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-11 Score=123.36 Aligned_cols=293 Identities=13% Similarity=0.114 Sum_probs=161.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
...|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35788999999988877763 44 3344455677778899999999998887654343333444457778888999999
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~ 307 (599)
.+.++.+.+.. +.+..++..+...|.+.|++++|.+.+..+.+.+..+.. .+..+-.
T Consensus 173 l~~l~~l~~~~----P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------ 229 (409)
T TIGR00540 173 RHGVDKLLEMA----PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------ 229 (409)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH------------------
Confidence 99988887643 556677888888889999999998888888876532111 1100000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
..+..+ ...+..+++...+..+.+.. .+.+...+..+...+...|+.++|.+++++..+. .||..
T Consensus 230 ------~a~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 230 ------KAEIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred ------HHHHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 001111 11111112222222222221 0125555666666666666666666666666554 22222
Q ss_pred H---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 007543 385 S---YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV--ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 459 (599)
Q Consensus 385 ~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (599)
. ...........++.+.+.+.+++..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0111111222344555555555544432 1122 33445555555555555555555532222234555555555
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 007543 460 MDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m 479 (599)
...+.+.|+.++|.+++++.
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-10 Score=120.83 Aligned_cols=395 Identities=15% Similarity=0.102 Sum_probs=256.3
Q ss_pred HhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 111 RLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 111 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 189 (599)
.+-.-+++..+..+.+.+...... ..-...|..+..+|-..|++++|.+.|.+..+....--+..+.-|.+.|.+.|++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 344446777777776666553311 1123457778888888888888888887666553211134455677778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN----KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
+.+...|++..+.. +-+..|...|...|...+ ..+.|..+..+..+. .+.|...|-.+...|-...-+ .+
T Consensus 359 e~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~----~~~d~~a~l~laql~e~~d~~-~s 432 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ----TPVDSEAWLELAQLLEQTDPW-AS 432 (1018)
T ss_pred HHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHhcChH-HH
Confidence 88888888877653 225566666766666664 456666666666542 255666777776666554333 33
Q ss_pred HHHHHHHH----HcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCH
Q 007543 266 RKLFALMA----ERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRA---GLQPDV------VSYALLINAYGKARRE 329 (599)
Q Consensus 266 ~~~~~~m~----~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~---g~~~~~------~~~~~li~~~~~~g~~ 329 (599)
+.+|.... ..+..+.....|.+-+. .|.+..|...|+..... ...+|. .+--.+...+-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 55555443 33444555555554432 46777777777666554 112222 1222344455566677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
+.|.+.|..+.+.. +.-+..|..+.-+....+...+|...++..... ...++..++.+...+.+...+..|.+-|+..
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 88888888877652 222333444443333446778888888887663 3456666666777888888888888877766
Q ss_pred hhC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 410 KQD-GFVPNVITYGTLIKGYAK------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 410 ~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
.+. ...+|..+.-+|.+.|.. .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 532 224687877777776653 234688999999988764 446667788888899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 477 KEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+..+.. .-...+|..+..+|..+|++..|.++++...
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998754 3345668889999999999999999999854
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-11 Score=121.20 Aligned_cols=283 Identities=13% Similarity=0.121 Sum_probs=214.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYE 263 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~ 263 (599)
.|++++|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 689999998877765542222 223444445557889999999999988753 44443322 3366788888999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 264 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 264 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+
T Consensus 171 ~Al~~l~~~~~~~---------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 171 AARHGVDKLLEVA---------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 8888888877652 3356778888999999999999999999999887
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007543 344 VRPTH-------KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 416 (599)
Q Consensus 344 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 416 (599)
..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.+++++..+. .|
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 44322 13334444444555666777777776543 3457888999999999999999999999998874 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
+.... ++.+....++.+++.+..+...+.. +-|...+.++...|.+.|++++|.+.|+.+.+ ..|+..++..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHH
Confidence 65322 3344446699999999999998763 34466788999999999999999999999998 6899999999999
Q ss_pred HHhhcCcHHHHHHHHHhcc
Q 007543 497 LAKTADERNEANELLGNFN 515 (599)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~~ 515 (599)
++.+.|+.++|.+++++-.
T Consensus 370 ~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999753
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-10 Score=111.82 Aligned_cols=362 Identities=14% Similarity=0.129 Sum_probs=253.7
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIIL 215 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll 215 (599)
|+..+....-.+.+.|....|...|-..... .+-.-.+|-.|..... +. ++.......++. .....=-.+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhcCcccchHHHHHHHH
Confidence 3444445556677888889999988887764 2223444544443332 22 222222222111 1111112345
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHhcccCC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV--QQSTVTYNSLMSFETN 293 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~ 293 (599)
.++....+.+++.+-..... ..|++-+...-+....+.-...++++|+.+|+++.+... -.|..+|+.++-...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~---~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLS---SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 56777778888888777776 345555555555555666778899999999999987632 1256677776655443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
-.+..-+-...... -+--+.|+..+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|+.-++.
T Consensus 312 ~skLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22222222222211 12234577788888999999999999999999876 56677899999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 007543 374 MRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ 453 (599)
Q Consensus 374 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (599)
.++-. +.|-..|..|..+|.-.+...-|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|......| ..+.
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 98753 6688999999999999999999999999998864 4488999999999999999999999999998765 3466
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCCHHHHHH---HHHHHhhcCcHHHHHHHHHhcc
Q 007543 454 TIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPDQKAKNI---LLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
..+..|...|-+.++.++|...+++-++ .|. .+..|..+ |..-+.+.+++++|..+.....
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~-~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE-IDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 8999999999999999999999988764 342 23323222 3355677888888877665543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=138.02 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=64.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 221 (599)
.+...+.+.|++++|++++++..... .+.+...|..+...+...+++++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555555555666665554332221 1223344444444455555555555555555544322 33344444444 455
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 007543 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 301 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~ 301 (599)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+....
T Consensus 91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------------------------- 140 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP------------------------- 140 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------------------
T ss_pred cccccccccccccccc-----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------------
Confidence 5555555555444321 1233344444555555555555555554443210
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007543 302 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 381 (599)
Q Consensus 302 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (599)
..+.+...|..+...+.+.|+.++|++.+++.++.. +.|....+.++..+...|+.+++..+++...+.. +.
T Consensus 141 ------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 141 ------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp ---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 012344445555555555555555555555555542 2234455555555555555555555555444332 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 444 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (599)
|+..+..+..+|...|+.++|+..|++..+.. +.|......+.+++...|+.++|.++.++.
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 33344445555555555555555555544432 224444445555555555555555554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-11 Score=120.56 Aligned_cols=286 Identities=13% Similarity=0.085 Sum_probs=205.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGY 262 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 262 (599)
..|+++.|.+.+.+..+.... ....+.....+....|+.+.|.+.+.+..+. .|+. .+.-.....+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 578999999998887765432 2334455567778889999999999888642 2332 2344457778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 263 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 263 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
+.|...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.
T Consensus 170 ~~Al~~l~~l~~~~---------------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888888877652 235667888999999999999999999999988
Q ss_pred CCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007543 343 GVRPTHKAYN-ILLDAF---AISGMVDQARTVFKCMRRDR---CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 343 g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 415 (599)
+.. +...+. .-..++ ...+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+.+++..+..
T Consensus 217 ~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-- 293 (409)
T TIGR00540 217 GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-- 293 (409)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--
Confidence 743 333332 111221 23333333344555544432 12378889999999999999999999999999864
Q ss_pred CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 416 PNVIT---YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 416 p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
||... ...........++.+.+.+.+++..+. .|+ . ....++.+.+.+.|++++|.+.|+........|+..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 33331 111222223457888999999888865 344 4 567899999999999999999999543333689999
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 490 AKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 490 ~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.+..+...+.+.|+.++|.+++++.
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999984
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=136.59 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAG-VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 393 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 393 (599)
.+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++..+.. +.|....+.++..+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34444444555555555555555543321 12344444445555555555555555555544431 11234444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 394 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
...|+.+++..+++...+.. +.|...+..+..+|...|+.++|...|++..+.. +.|..+...+.+++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 44455444444444443322 2233334444444444455555555555444321 223444444444455555555554
Q ss_pred HHHHHH
Q 007543 474 VWYKEM 479 (599)
Q Consensus 474 ~~~~~m 479 (599)
++.++.
T Consensus 269 ~~~~~~ 274 (280)
T PF13429_consen 269 RLRRQA 274 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 444443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.6e-12 Score=127.06 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=170.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS---Y 386 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~ 386 (599)
+-.+.+|.++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|+|...|+..... |+.. |
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAw 492 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAW 492 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHH
Confidence 3457899999999999999999999999999864 447889999999999999999999999988753 5544 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
.-+...|.+.++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.|+|++++++....+ +-|+..--.-+..+...
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSL 570 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhh
Confidence 556668999999999999999999877 4478888889999999999999999999998654 22444444455667789
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCc
Q 007543 467 KDFDSAVVWYKEMESCGFPPDQKA-KNILLSLAKTADERNEANELLGNFNHPNNEPGI 523 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 523 (599)
+++++|+..++++.+ +.|+..+ +..+...|.+.|+.+.|..-+.-+.+.++++.-
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999998 6777754 667778999999999999988887666665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.8e-11 Score=109.04 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=161.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..+.++|.++|-+|.+.... +..+-.+|.+.|-+.|..|.|++++..+++.....+..-......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34555666666666543221 33344455555666666666666666655421111111122334455566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
+.+|..+.+.+ .--......|+..|-+..+|++|+++-+++.+.+-.
T Consensus 127 E~~f~~L~de~---------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEG---------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcch---------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 66666665431 011223445666666677777777777666665433
Q ss_pred CCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007543 346 PTHK----AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421 (599)
Q Consensus 346 ~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 421 (599)
+..+ .|.-|...+....+++.|..++.+..+.. +..+..-..+...+...|+++.|.+.|+...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 3322 34455555555667777777777766542 222333334445677777777777777777776544445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 499 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-- 499 (599)
..|..+|.+.|+.++....+.++.+... ....-..+...-....-.+.|..++.+-+. -.|+...+..|+..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcc
Confidence 7777778888888888877777776532 333333333333333334555555544444 3677777777776532
Q ss_pred -hcCcHHHHHHHHHhcc
Q 007543 500 -TADERNEANELLGNFN 515 (599)
Q Consensus 500 -~~g~~~~A~~~~~~~~ 515 (599)
..|...+-..++++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 2344555555555554
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-09 Score=113.47 Aligned_cols=360 Identities=15% Similarity=0.134 Sum_probs=266.4
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..|+..+|.+++..++++. +.+...|..|..+|-..|+.+++...+-..-.... .|...|..+.....+.|.++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHHHH
Confidence 3489999999999999987 56788999999999999999999998877766643 37799999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF----HMMIYMYKKAGGYEKARKLF 269 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~ 269 (599)
-.|.+.++..+. +...+---...|-+.|+...|..-|.++.... + +.|..-+ -.+++.|...++-+.|.+.+
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD--P-PVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--C-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999987543 55555566778999999999999999998642 1 2222222 33466777788889999999
Q ss_pred HHHHHcC----CCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH--------------------------HHH
Q 007543 270 ALMAERG----VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY--------------------------ALL 319 (599)
Q Consensus 270 ~~m~~~g----~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~--------------------------~~l 319 (599)
+.....+ --|+..++..|+-....++.+......+.....++|..-+ .-+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 8887632 2245556666666667777777766666552222222111 122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVR--PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 397 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 397 (599)
+-++...+..+....+...+.+..+. -+...|.-+..+|...|++.+|+.+|..+......-+...|--+..+|-..|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 33444555555555555556555533 3455788999999999999999999999988755556788999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCcCHHHHHHHHHHHHhcCCH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV--------NGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
..++|.+.|+..+... +-+...-..|...+.+.|+.++|.+.+..+.. .+..|+..+.-...+.+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999998764 33555666777888999999999999998641 23445555556667778888888
Q ss_pred hHHHHHHHHHHh
Q 007543 470 DSAVVWYKEMES 481 (599)
Q Consensus 470 ~~A~~~~~~m~~ 481 (599)
++=+.....|+.
T Consensus 543 E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 543 EEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHHH
Confidence 876655555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-10 Score=109.07 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=171.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
..|++++|.+.|++.....-......||.-+. ..|++++|+..|-.+... +..+..+...+.+.|-...+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 36789999999999987644444445555444 378999999998877653 234677788889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV 415 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 415 (599)
+.+.... ++.|+...+-|.+.|-+.|+-..|.+.+.+--+. ++-+..+...|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 9887654 5778899999999999999999999887655432 456788888899999999999999999998754 58
Q ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 416 PNVITYGTLIKGYA-KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 416 p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+..-|..++..|. +.|++++|.++|+..... ++.|..+..-|++.+...|- .++.++-+++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 99999998886665 689999999999998764 67788899999998888774 4455554444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-10 Score=103.82 Aligned_cols=304 Identities=15% Similarity=0.133 Sum_probs=215.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIIL 215 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll 215 (599)
.+|..=++.+. ..+.++|.++|-+|.+... -+..+.-+|.+.|.+.|..|.|+++...+.++---+. ......|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444444443 5688999999999998642 2566778899999999999999999998876522111 22445567
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
.-|...|-+|.|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..+..+-
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------ 178 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------ 178 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH------------
Confidence 77899999999999999998532 23345678899999999999999999888877643332111
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
-...|.-|...+....+.+.|..++.+..+.+ +..+..--.+.+.+...|++..|.+.++...
T Consensus 179 ----------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 179 ----------------IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred ----------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 12345566666677778888888888887765 4444455566777888899999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 376 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 376 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
+.+..--..+...|..+|.+.|+.++...++.++.+... ....-..+.+.-....-.+.|..++.+-... +|+...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~g 317 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRG 317 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHH
Confidence 774433445677788889999999999998888887643 3333334444444445566666666665544 688888
Q ss_pred HHHHHHHHHh---cCCHhHHHHHHHHHHh
Q 007543 456 FTTIMDAYGK---NKDFDSAVVWYKEMES 481 (599)
Q Consensus 456 ~~~li~~~~~---~g~~~~A~~~~~~m~~ 481 (599)
+..+++.-.. .|...+-+..++.|..
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 8888887643 3456666777777754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-08 Score=101.15 Aligned_cols=399 Identities=12% Similarity=0.077 Sum_probs=203.2
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF----MNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
+..+..|..|..++..+++. ++.+...|.+-...=-..|+.+...++.++ +...|+.-+...|-.=...|-..|
T Consensus 416 larLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 33445566666676666654 345556666555555566676666666654 334555556666666555665666
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..-.+..+....+..|++- -..||..-...|.+.+.++-|..+|...++. ++.+...|...+..--..|..++-
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6555555555555555432 1235555555555555555555555555432 234444555555444445555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhc----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMS----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
..+|.+.... .|....+-.|.. ..|+...|..++.+..+.... +...|..-+........++.|..+|.+...
T Consensus 570 ~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 570 EALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 5555555433 121111111111 134444555555444443321 334444444444444555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------------------CCCCCHHHHHH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD---------------------------------RCSPDICSYTT 388 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------~~~p~~~~~~~ 388 (599)
. .|+...|.--+...--.++.++|++++++..+. .++..+..|-.
T Consensus 647 ~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 I--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred c--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 2 334444433333333344444444444444432 12223334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (599)
+...--+.|.+-.|..++++..-.+. -|...|-..|.+=.+.|+.+.|..+..+..+. ++.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 44444444555555555555544432 24455555555555555555555555554432 23334455555555544444
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCcccccc
Q 007543 469 FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSI 528 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 528 (599)
-......+++ +.-|+...-++...+....+++.|+..+.+..+.++.-|-.|...
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 3333333322 234555556666777788899999999999887777777666544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-09 Score=102.56 Aligned_cols=291 Identities=18% Similarity=0.195 Sum_probs=189.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.++-...+.++++.=.+.....|..-+...-+....+.-...++++|+.+|+.+.+.+... -.|..+|+.++- .+..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-l~dmdlySN~LY--v~~~ 311 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-LDDMDLYSNVLY--VKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-chhHHHHhHHHH--HHhh
Confidence 3444444556666655555555554444433334444445556666666666665432111 124455555442 2222
Q ss_pred CHHH---HHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 261 GYEK---ARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 261 ~~~~---A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
+-.- |..++ .-...+|.+.+ ...-.+..+..+.|...|+...+.+ +.....|+.+..-|....+...|+.-+
T Consensus 312 ~skLs~LA~~v~---~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 312 KSKLSYLAQNVS---NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hHHHHHHHHHHH---HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1111 11111 11112222111 0001111234556666666666654 234567899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 416 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 416 (599)
+..++.. +.|-..|-.|.++|.-.+...-|+-.|++...-. +-|...|.+|..+|.+.++.++|++.|++....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999886 7788999999999999999999999999988753 5588999999999999999999999999999877 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQT--IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+...|..|.+.|-+.++.++|.+.|.+-++ .|..-+.. .-.-|..-+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 778999999999999999999999988764 23222211 222244556778888887766555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.2e-11 Score=121.10 Aligned_cols=281 Identities=13% Similarity=0.100 Sum_probs=203.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 153 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
+..+|...|+++++.- .-+......+.++|...+++++|.++|+.+.+..+- -+...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4577888888866652 223455566778888888888888888888765321 255667666543322 112222
Q ss_pred H-HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC
Q 007543 231 F-MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~ 309 (599)
+ +.+++.+ +-.+.+|-++.++|.-+++.+.|++.|++..+.
T Consensus 409 Laq~Li~~~----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl---------------------------------- 450 (638)
T KOG1126|consen 409 LAQDLIDTD----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL---------------------------------- 450 (638)
T ss_pred HHHHHHhhC----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----------------------------------
Confidence 2 2222221 445668888888888888888888888877764
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 310 QP-DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 310 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
.| ...+|+.+..-+.....+|.|...|+..+... +.+-..|-.|.-.|.+.++++.|.-.|++..+-+ +-+.+....
T Consensus 451 dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~ 528 (638)
T KOG1126|consen 451 DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCH 528 (638)
T ss_pred CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhh
Confidence 34 67788888888888889999999999887543 2233455566778899999999999999888653 345667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNK 467 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 467 (599)
+...+-+.|+.++|+.+++++.....+ |+..--..+..+...+++++|+..++++.+. .|+ ..+|-.+...|.+.|
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLG 605 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHc
Confidence 778888999999999999998876644 5544445566677789999999999999864 455 668888889999999
Q ss_pred CHhHHHHHHHHHHh
Q 007543 468 DFDSAVVWYKEMES 481 (599)
Q Consensus 468 ~~~~A~~~~~~m~~ 481 (599)
+.+.|+.-|--|.+
T Consensus 606 ~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 606 NTDLALLHFSWALD 619 (638)
T ss_pred cchHHHHhhHHHhc
Confidence 99999998888877
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-09 Score=102.76 Aligned_cols=292 Identities=15% Similarity=0.176 Sum_probs=200.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
.|++.+|++...+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+.-..++...+..........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 79999999999998888654 35566677788888999999999999998864466777778888889999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC
Q 007543 231 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ 310 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~ 310 (599)
..++.+.. +.+..+......+|.+.|++.....++.++.+.|.-.+... .++
T Consensus 176 v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------~~l------ 227 (400)
T COG3071 176 VDQLLEMT----PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------ARL------ 227 (400)
T ss_pred HHHHHHhC----cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH------------------HHH------
Confidence 99998654 66778889999999999999999999999998876444321 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
...+|..+++-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++..+++..|...+ .
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----L 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----H
Confidence 1234555555555444444444455544332 244555556666667777777777777776666655444211 2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
-.+.+-++.+.-.+..+...+.. +-++..+..|...|.+.+.+.+|.+.|+...+. .|+..+|+.+.+++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 23445556655555555544322 223356666777777777777777777765543 566777777777777777777
Q ss_pred HHHHHHHHHH
Q 007543 471 SAVVWYKEME 480 (599)
Q Consensus 471 ~A~~~~~~m~ 480 (599)
+|.+..++..
T Consensus 379 ~A~~~r~e~L 388 (400)
T COG3071 379 EAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHH
Confidence 7777666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-08 Score=97.02 Aligned_cols=384 Identities=14% Similarity=0.138 Sum_probs=288.0
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++...|..+++.+.... .-+...|.--+.+=.++..++.|+.+|+..... .+.-...|..-+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 356677888988887654 234455667788888999999999999998875 22234467777777777899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|++..+ ..|+...|.+.++.-.+.+.++.|..++++.+- +.|++..|--.+..--++|+...|..+|....+
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999877 689999999999999999999999999999873 469999999999999999999999999998875
Q ss_pred c-CCC-CCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCH---HHHHHH-----HHHH
Q 007543 275 R-GVQ-QSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPD--VVSYALLINAYGKARRE---EEALAV-----FEEM 339 (599)
Q Consensus 275 ~-g~~-~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~---~~A~~~-----~~~m 339 (599)
. |-. -+...+.+.-. .+..++.|.-+|+-.+..- +.+ ...|......--+-|+. ++++-- ++.+
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 3 110 01122222222 2566778888888877752 223 34455555444455554 343322 3444
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHH--------HHHHhcCCHHHHHHHHHHH
Q 007543 340 LDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTML--------SAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li--------~~~~~~g~~~~A~~~~~~m 409 (599)
++.+ +.|-.+|--.+..-...|+.+...++|+..+.. ++|-. ..|.-.| -.-....+.+.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5554 567778888888888889999999999999874 45522 1121111 1123568999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 007543 410 KQDGFVPNVITYGTLIKGYA----KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 485 (599)
++. ++....||.-+--.|+ ++.++..|.+++...+ |.-|-..+|...|..=.+.++++.+.+++++.++.+ |
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-P 468 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-P 468 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-h
Confidence 884 4556677766555554 6789999999999988 778999999999999999999999999999999954 4
Q ss_pred CCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 486 PDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 486 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
-+..+|.-....-...|+.+.|+.++.-..
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 455789888888889999999999999865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-09 Score=102.80 Aligned_cols=383 Identities=15% Similarity=0.121 Sum_probs=250.2
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYK 190 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 190 (599)
-+.+.+++|.+.+.|+.+.. ++ +..|.....+|...|+|++..+--.+..+. .|+ +..+..-.+++-+.|+++
T Consensus 126 f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHH
Confidence 34567888888888888765 44 677778888888888888888887777775 344 446666677777778887
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH------------
Q 007543 191 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK------------ 258 (599)
Q Consensus 191 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------ 258 (599)
+|+.=..-..-.+--.|..+-..+=+.+- ..|....++-...++..+-|.....++....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77653322211111112221111111111 1122222222222233344443333333222211
Q ss_pred -------------cC---CHHHHHHHHHHHHHc-CCCCCHH---------HHHHHhc-----ccCCHHHHHHHHHHHHHc
Q 007543 259 -------------AG---GYEKARKLFALMAER-GVQQSTV---------TYNSLMS-----FETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 259 -------------~g---~~~~A~~~~~~m~~~-g~~~~~~---------~~~~ll~-----~~~~~~~a~~~~~~m~~~ 307 (599)
.+ .+.+|...+.+-... ...++.- .-..++. ..|+...+..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222211100 0001100 1111121 157888888899998887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT 387 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 387 (599)
...++. .|.-+..+|....+.++....|++..+.+ +-++.+|..-..++.-.+++++|..-|++.+... +-+...|.
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~i 432 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYI 432 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHH
Confidence 544333 37778889999999999999999998876 5677788888888888899999999999988753 33556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-------HH--HHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------QT--IFTT 458 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~--~~~~ 458 (599)
.+..+..+.+.++++...|++.++. ++-.+..|+.....+...+++++|.+.|+..++. .|+ .. +...
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhh
Confidence 7777888999999999999999875 4557889999999999999999999999998853 333 21 2222
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 459 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
++- +.-.+++..|.+++.+..+ +.|.. ..+..|...-.+.|+.++|.+++++.
T Consensus 510 ~l~-~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 510 LLV-LQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hhh-hchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 2234899999999999988 55654 56889999999999999999999884
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-08 Score=97.00 Aligned_cols=285 Identities=15% Similarity=0.140 Sum_probs=226.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
.|++.+|.++..+-.+.+..| ...|..-..+.-..|+.+.+..++.++-+. .-.++....-+........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchhH
Confidence 789999999999987776553 445667777888899999999999998742 1245566677778888888999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
..-++++.+.+ +-+.........+|.+.|++.....+...+.+.|.-
T Consensus 173 ~~~v~~ll~~~---------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l 219 (400)
T COG3071 173 RENVDQLLEMT---------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLL 219 (400)
T ss_pred HHHHHHHHHhC---------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCC
Confidence 88877776642 235667788889999999999999999999999866
Q ss_pred CCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 346 PTHK-------AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 346 ~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
.+.. +|+.+++-....+..+.-...+++.... ...++..-.+++.-+...|+.++|.++.++..+.+..|+.
T Consensus 220 ~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 220 SDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 5543 5777777776666666666677766543 3456777788899999999999999999999988766662
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
...-.+.+-++.+.-.+..++-.+. .+-++..+.+|...|.+++.|.+|...|+...+ ..|+..+|..+..++
T Consensus 299 ----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~ 371 (400)
T COG3071 299 ----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADAL 371 (400)
T ss_pred ----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHH
Confidence 2233456677887777777776643 233457899999999999999999999998888 689999999999999
Q ss_pred hhcCcHHHHHHHHHhcc
Q 007543 499 KTADERNEANELLGNFN 515 (599)
Q Consensus 499 ~~~g~~~~A~~~~~~~~ 515 (599)
.+.|+..+|.+..++..
T Consensus 372 ~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 372 DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHcCChHHHHHHHHHHH
Confidence 99999999999888754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-09 Score=99.82 Aligned_cols=356 Identities=13% Similarity=0.074 Sum_probs=239.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-LTYQIILKLFVE 220 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~ 220 (599)
...+-|.+.|++++|++.+...++. .|+ .+-|.....+|...|+++++.+.-.+.++. .|+- ..+.--.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 4567788999999999999999987 567 888999999999999999999988888774 4442 244445566777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-c--CCCCCHHHHHHHhc
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA--------LMAE-R--GVQQSTVTYNSLMS 289 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~-~--g~~~~~~~~~~ll~ 289 (599)
.|++++|+.-..- ..+..++-...-.-.+.++++ +-.+ . .+.|+....++...
T Consensus 196 lg~~~eal~D~tv----------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 196 LGKFDEALFDVTV----------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred hccHHHHHHhhhH----------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7888777643221 122222222222222222222 2112 1 23355544444443
Q ss_pred cc----------------CCHHHHHHHH------------HHHHHc------CCCCC---------HHHHHHHHHHHHhc
Q 007543 290 FE----------------TNYKEVSKIY------------DQMQRA------GLQPD---------VVSYALLINAYGKA 326 (599)
Q Consensus 290 ~~----------------~~~~~a~~~~------------~~m~~~------g~~~~---------~~~~~~li~~~~~~ 326 (599)
.. ....++.+.+ +.+.+. ....+ ..+.......+.-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 10 0111222211 111110 01111 11222222334556
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|+.-.|..-|+..+..... +...|--+..+|....+.++....|++..+.. +-|+.+|..-...+.-.+++++|..-|
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 8888999999999887533 33337778888999999999999999988764 446677777778888889999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 007543 407 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (599)
++.+... +-+...|-.+.-+..+.+++++++..|++..+. ++--+.+|+-....+...++++.|.+.|+..++ +.|
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~ 493 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEP 493 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hcc
Confidence 9998875 337778888888888999999999999999875 444578999999999999999999999999987 445
Q ss_pred C-------HHH--HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCccc
Q 007543 487 D-------QKA--KNILLSLAKTADERNEANELLGNFNHPNNEPGING 525 (599)
Q Consensus 487 ~-------~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 525 (599)
+ ..+ ..+++-.-. .+++..|..++++..+.+++-....
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred ccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHH
Confidence 4 222 222332222 3889999999999877777654443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-09 Score=103.39 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
....+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999998764 4567788889999999999999999999988764 446677888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
.+...|++++|.+.+++...... ......+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999886432 2245567778889999999999999999988653 334668888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+|..++++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999875 34556667777888889999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-09 Score=111.98 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTML 390 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li 390 (599)
+...+..+...+...|++++|...|++.++.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~ 413 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKL 413 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHH
Confidence 34455555555666666666666666666553 3344555666666666666666666666665542 22 22222333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 469 (599)
..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++... .|+ ....+.+...|+..|
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--
Confidence 345556666666666666554321113444555566666666666666666665432 233 223444444555555
Q ss_pred hHHHHHHHHHH
Q 007543 470 DSAVVWYKEME 480 (599)
Q Consensus 470 ~~A~~~~~~m~ 480 (599)
+.|...++++.
T Consensus 490 ~~a~~~l~~ll 500 (553)
T PRK12370 490 ERALPTIREFL 500 (553)
T ss_pred HHHHHHHHHHH
Confidence 35555555554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-09 Score=100.10 Aligned_cols=201 Identities=16% Similarity=0.109 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007543 245 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 324 (599)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 324 (599)
....+..+...|...|++++|...+++..+.. +.+...+..+...|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---------------------------------p~~~~~~~~la~~~~ 76 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD---------------------------------PDDYLAYLALALYYQ 76 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------cccHHHHHHHHHHHH
Confidence 34567777788888888888888877765431 223456677777888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAE 403 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 403 (599)
..|++++|.+.+++..+.. +.+...+..+...+...|++++|...|++...... ......+..+...+...|++++|.
T Consensus 77 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 77 QLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888887764 44566777778888888888888888888776422 223456666777888889999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 156 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 156 KYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9988887754 335667888888888899999999999888765 244566777778888888999999888887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-07 Score=95.77 Aligned_cols=396 Identities=14% Similarity=0.153 Sum_probs=222.7
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 106 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 106 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
+..+.++-..+++...+.+.+.+.+. ++--..+.....-.+...|+-++|......-....+. +.+.|..+.-.+..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344444445566666655555542 2223344444444555667777777666655554333 66677777666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 265 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 265 (599)
..++++|+..|......+.. |...+.-+.-.-++.++++.....-..+++.. +.....|..++-++.-.|++..|
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~----~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR----PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777665432 55555555555556666666666655555421 33445566666666667777777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHhc---------ccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHH
Q 007543 266 RKLFALMAERG-VQQSTVTYNSLMS---------FETNYKEVSKIYDQMQRAGLQPDVVS-YALLINAYGKARREEEALA 334 (599)
Q Consensus 266 ~~~~~~m~~~g-~~~~~~~~~~ll~---------~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~ 334 (599)
..+++...+.. -.|+...+.-... -.|..++|.+.+..-...- .|... --+-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 77776666543 2334333322211 1344455554444333221 12222 2233455666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHH----------------------------------HHHHhCC
Q 007543 335 VFEEMLDAGVRPTHKAYNILLD-AFAISGMVDQAR-TVF----------------------------------KCMRRDR 378 (599)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~----------------------------------~~m~~~~ 378 (599)
++..++.. .||..-|...+. ++.+-.+.-++. .+| ..+.+.|
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 455554443333 222222222222 333 3333344
Q ss_pred CCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHHhhCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 007543 379 CSPDICSYTTMLSAYVNASDME----GAEKFFRRLKQDG----------FVPNVI--TYGTLIKGYAKVNNLEKMMEIYD 442 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~ 442 (599)
+++- +..+.+-|-.....+ -+..+...+...| -+|... ++-.++..|-+.|+++.|..+++
T Consensus 319 ~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3322 222222221111111 1111111111111 134444 44567888899999999999999
Q ss_pred HHHHCCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 443 KMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 443 ~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
....+ .|+. ..|..=.+.+..+|++++|..++++..+.+ .||...-.--.....+.++.++|.++..++.+.+.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 99865 6774 467777788999999999999999998865 56665554666777789999999999998765553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-08 Score=93.73 Aligned_cols=304 Identities=14% Similarity=0.111 Sum_probs=225.4
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-
Q 007543 205 RPSALTYQIILKLFVE--ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST- 281 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~- 281 (599)
.|+..+....+.+++. .++...|...+..+.. ...++.|+.....+.+.+...|+.++|...|++....+ |+.
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i 266 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNV 266 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhh
Confidence 3444444555555444 3444555555544432 45667888899999999999999999999999887642 332
Q ss_pred ---HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007543 282 ---VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 358 (599)
Q Consensus 282 ---~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (599)
..|..|+...|++++...+...+.... +-....|..-.......++++.|+.+-++.++.. +.+...|-.=...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 347777888899999888888776542 1233334444455567788999999999988765 44555665556677
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHh-cCCHHH
Q 007543 359 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI-KGYAK-VNNLEK 436 (599)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~ 436 (599)
...|+.++|.-.|+...... +-+...|.-|+..|...|.+.+|.-+-+...+. ++-+..+...+. ..|.- ...-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 88899999999999887642 457899999999999999999999887776543 244666665553 33332 234588
Q ss_pred HHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 437 MMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
|.+++++-.. +.|+ ....+.+...|...|..++++.++++... ..||....+.|.+.+...+.+++|...+....
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999998875 4677 44778888999999999999999999988 78999999999999999999999999998876
Q ss_pred CCCCC
Q 007543 516 HPNNE 520 (599)
Q Consensus 516 ~~~~~ 520 (599)
..++.
T Consensus 499 r~dP~ 503 (564)
T KOG1174|consen 499 RQDPK 503 (564)
T ss_pred hcCcc
Confidence 55553
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-10 Score=114.66 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=53.9
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
+.|+..+|..||.-||..|+.+.|- +|.-|.-+..+.+...++.++.+..+.++.+.+. .|...||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4566667777777777777777776 7776666665666666777776666666655554 456667777
Q ss_pred HHHHHHHcCCHHH
Q 007543 214 ILKLFVEANKFKE 226 (599)
Q Consensus 214 ll~~~~~~g~~~~ 226 (599)
|..+|...|++..
T Consensus 89 Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHhccchHH
Confidence 7777777776544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-09 Score=112.77 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHh
Q 007543 171 PSVVSHTALMEAYGR-----GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---------ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 171 p~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~ 236 (599)
.+...|...+++... .+.+++|+++|++..+..+. +...|..+..++.. .+++++|...++++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 355555555554321 23477788888777765432 34455555444332 2346778888888775
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 237 EEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY 316 (599)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 316 (599)
.+ +.+...+..+...+...|++++|...|++..+.+ +.+...+
T Consensus 333 ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------------------------P~~~~a~ 375 (553)
T PRK12370 333 LD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---------------------------------PISADIK 375 (553)
T ss_pred cC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------CCCHHHH
Confidence 43 4566777777777778888888888888777641 2234556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..+...+...|++++|+..+++..+.. +.+...+..++..+...|++++|...+++..+...+-++..+..+..++...
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 667777777777777877777777664 2222233334444556777777877777766543222344556666677777
Q ss_pred CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+. ...+....+..++ +.-.|+-+.+..
T Consensus 455 G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~ 528 (553)
T PRK12370 455 GKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKM 528 (553)
T ss_pred CCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHH
Confidence 8888888877776544 233 333444555556656 4666666666532 2233333333333 444566555555
Q ss_pred HHHHHHhC
Q 007543 475 WYKEMESC 482 (599)
Q Consensus 475 ~~~~m~~~ 482 (599)
+ +++.+.
T Consensus 529 ~-~~~~~~ 535 (553)
T PRK12370 529 W-NKFKNE 535 (553)
T ss_pred H-HHhhcc
Confidence 5 666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=84.77 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-09 Score=99.24 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=196.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 322 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 322 (599)
-.|..--+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----------------------------------~~~~dTfllLskv 265 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------------------FPHPDTFLLLSKV 265 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----------------------------------CCchhHHHHHHHH
Confidence 344455567888999999999999888776654 4677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHKA-YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 401 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 401 (599)
|.+..+++.|+.+|.+-++. .|-.+| ...+...+-..++.++|.++++...+.. +.++....++...|.-.++++-
T Consensus 266 Y~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~ 342 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEM 342 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHH
Confidence 99999999999999998876 454444 4567778888999999999999988753 4566777778889999999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 402 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.-|++....--.|+ ..+|-.+.......|++..|.+.|+-.
T Consensus 343 AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 343 ALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 99999999999965 899999999999999999999999999886544455 458888888889999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 480 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
...+ .-....++.|.-.-.+.|+++.|+.++.......
T Consensus 422 L~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 422 LTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 8743 3344778888888899999999999999865433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-08 Score=100.44 Aligned_cols=177 Identities=14% Similarity=0.217 Sum_probs=109.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHHc
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA----G----------VRPTH--KAYNILLDAFAIS 361 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~ 361 (599)
..++..+...|+++ +|+.|-..|....+..-...++...... + -+|+. .++.-+...|...
T Consensus 131 ~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 131 DEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 34445555555432 4455555555444444444444443321 1 12343 2445556677778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 362 GMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (599)
|++++|+.++++.++. .|+ +..|..-...+-+.|++.+|.+.++.....+. -|...-+-.+..+.++|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888877765 344 55666667777888888888888888777653 3666667777777788888888888
Q ss_pred HHHHHHCCCCcCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 441 YDKMRVNGIKPNQT------IF--TTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 441 ~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+......+..|-.. +| .....+|.+.|++..|++.|....
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87776554333221 22 344567778888887776665553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=82.79 Aligned_cols=49 Identities=33% Similarity=0.779 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 416 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 416 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555554455555555555554444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-08 Score=104.37 Aligned_cols=246 Identities=21% Similarity=0.264 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G-PRPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPL--- 242 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 242 (599)
..+...|...|...|++++|..+++...+. | ..|...+. +.+...|...+++++|..+|+.++......+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566889999999999999999887653 2 13444443 3477788999999999999999876422112
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 007543 243 -KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVV-SYALLI 320 (599)
Q Consensus 243 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li 320 (599)
+.-..+++.|...|.+.|++++|...++...+ +++..... ..|.+. -++.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------------------I~~~~~~~-~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------------------IYEKLLGA-SHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------HHHHhhcc-ChHHHHHHHHHHH
Confidence 22346678888899999999999998876654 44442111 122332 366777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAG---VRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDR----C--SP-DICSY 386 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g---~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~--~p-~~~~~ 386 (599)
..|+..+++++|..+++...+.- +.++ ..+++.|...|.+.|++++|.++|++.+... . .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 88889999999999988764320 1111 2367777777777777777777777665421 1 11 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh----CCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQ----DGF-VP-NVITYGTLIKGYAKVNNLEKMMEIYDKM 444 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (599)
+.+...|.+.++.++|.++|.+... .|. .| ...+|..|...|.+.|+++.|.++.+..
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 5555556666666655555554321 111 01 1234555555555555555555554444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-07 Score=86.26 Aligned_cols=384 Identities=14% Similarity=0.146 Sum_probs=228.7
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
.++++++|+.+++.+.... .++......|.-++.-.|.+.+|..+-.+..+ +.-.-..|+..--+.++-++-.
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHH
Confidence 4677777777777776644 34445555566666666777777776655443 3444444555555666666555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM-MIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m 272 (599)
.+-..+... ..--.+|.....-.-.+.+|++++.+++.. .|+....|. +.-+|.+..-++-+.++++-.
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-----n~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-----NPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-----ChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 555444321 112223333334445688999999999853 455555554 455778888889898888877
Q ss_pred HHcCCCCCHHHHHHHhcc-----cCCHH--HHHH----------HHHHHHHcCC------------CCC-----HHHHHH
Q 007543 273 AERGVQQSTVTYNSLMSF-----ETNYK--EVSK----------IYDQMQRAGL------------QPD-----VVSYAL 318 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~~-----~~~~~--~a~~----------~~~~m~~~g~------------~~~-----~~~~~~ 318 (599)
.+. ++.+....|..... .|+.. +..+ ..+.+.+.++ -|. +..-..
T Consensus 212 L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 212 LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 654 22233333332221 12111 1111 1111211110 011 112234
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA-----FAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSA 392 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~ 392 (599)
|+--|.+.+++.+|..+.+++.-. .|-......+..+ ......+.-|.+.|+-.-+.+..-|. ..-.++.+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 555688999999999988876411 2222222222221 22223466677777766555544443 234556666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCCHhH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT-TIMDAYGKNKDFDS 471 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~ 471 (599)
+.-..++++.+-+++.+...=...|...|| +..+++..|++.+|+++|-.+....++ |..+|. .|.++|.++++++.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 777778999999988887654444555554 789999999999999999887644333 455664 45678889999999
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCcHHHHHHHHHhccCCCCCCC
Q 007543 472 AVVWYKEMESCGFPPDQKA-KNILLSLAKTADERNEANELLGNFNHPNNEPG 522 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 522 (599)
|..++-++. -+.+..+ ...+..-|.+.+++--|-+.++.+...++.|.
T Consensus 447 AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 447 AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 987776553 2334434 33445678899998888888888776666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-07 Score=97.67 Aligned_cols=292 Identities=14% Similarity=0.156 Sum_probs=159.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA---- 221 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---- 221 (599)
..+...|++++|++.+++-... +.............+.+.|+.++|..+|..+++.++. |..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3445556666666665553332 2212233334455555566666666666666554432 333333333333111
Q ss_pred -CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 222 -NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY-EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 222 -g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
.+.+...++++++.... |.......+.-.+..-..+ ..+..++..+..+|+++--.....+..-..+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y-----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY-----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC-----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 13444455555554321 1111111111111111111 2233444445555554433333333332222222333
Q ss_pred HHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007543 300 IYDQMQRA----G----------LQPDV--VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 300 ~~~~m~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (599)
++...... + -.|.. .++..+...|...|++++|+.++++.++.. +..+..|..-...|-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 33333211 1 12333 344666778888999999999999988873 3336678888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH--------HHHHHHHHHhcCCHH
Q 007543 364 VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT--------YGTLIKGYAKVNNLE 435 (599)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~~ 435 (599)
+.+|.+.++...... .-|-..-+-.+..+.++|+.++|.+++......+..|-... ..-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998888764 23556666677788899999999999888876554332211 234567788889988
Q ss_pred HHHHHHHHHHH
Q 007543 436 KMMEIYDKMRV 446 (599)
Q Consensus 436 ~A~~~~~~m~~ 446 (599)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-08 Score=96.20 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=202.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..-+........+-+...+++.+..++++.+.+.+ ++....+-.-|..+...|+..+-..+=.++.+.- +....+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d----pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD----PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC----CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 44456666666666777777777777777777543 5555566666667777777766666666666542 223344
Q ss_pred HHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 284 YNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 284 ~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
|-++-. ..+++.+|.+.|.+...... .=...|......|+-.|..++|+..+...-+.- +-...-+--+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 443322 23677777777776665431 123568888889999999999999888775431 1122223334456778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CC-CCHHHHHHHHHHHHhcCCH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----G-FV-PNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~-p~~~~~~~li~~~~~~g~~ 434 (599)
.++.+.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. + -+ -...+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 89999999999888753 3557778888877778889999999999887621 1 11 2455789999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
++|+..+++.... .+.|..++.++.-.|...|+++.|...|.+.+. +.|+..+...+++.+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998875 356788999999999999999999999999987 789887777777644
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.4e-06 Score=86.13 Aligned_cols=385 Identities=12% Similarity=0.127 Sum_probs=196.3
Q ss_pred HHHHHhhhcccHHHHHHHHHHHHHcCC-----CCCCHHhHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCC--HHHH
Q 007543 107 GTLVRLKQLKKWNVVSEVLEWLRIQSW-----WDFNEMDFLMLITAYGKQGDFNK---AEKVLSFMNKKGYAPS--VVSH 176 (599)
Q Consensus 107 ~~l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~ 176 (599)
..+.-+...+++++|.+.++.+..+.. .+.+...|..+-+...++-+.-. ...++..+..+ -+| -..|
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHH
Confidence 333444556677777776665544321 12334455555555554433322 23344444333 223 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
++|.+-|.+.|.+++|.++|++.... .....-|..+.++|+.-..-.-+..+= + .....+-+.+...
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~-a~~~~~n~ed~~d-------- 318 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--L-ADEESGNEEDDVD-------- 318 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--h-hhhcccChhhhhh--------
Confidence 78888888888888888888776653 123444555555555432222111111 1 0001111111111
Q ss_pred HHcCCHHHHHHHHHHHHHc-----------CCCCCHHHHHHHhcc-cCCHHHHHHHHHHHHHcCCCC------CHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAER-----------GVQQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQP------DVVSYAL 318 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~-----------g~~~~~~~~~~ll~~-~~~~~~a~~~~~~m~~~g~~~------~~~~~~~ 318 (599)
++-...-|+.+..+ .-..++.+|..-+.. .++..+....|.+..+. +.| -...|..
T Consensus 319 -----l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 319 -----LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE 392 (835)
T ss_pred -----HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence 11222222222222 112234445544443 34566666666666553 112 1234777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------C---
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-----------P--- 381 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p--- 381 (599)
+.+.|-..|+++.|..+|++..+..++-- ..+|..-..+-.+..+++.|+++.+......-. +
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 77888888888888888888776543222 235555556666777777887777665432111 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHH
Q 007543 382 ---DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ-TIFT 457 (599)
Q Consensus 382 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 457 (599)
+...|...++.--..|-++....+++++.+..+. ++.........+-...-++++.++|++=+..=-.|+. .+|+
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 2234555555555667777777777777765443 2222222222333445566777777664433223443 3666
Q ss_pred HHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHH-H-HHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 458 TIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK-A-KNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 458 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~-~-~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+.+.-+.+ .-..+.|..+|++.++ |++|... | |......--+.|....|..++++.
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66555443 2346677777777776 5565542 2 222223333456666666666653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-08 Score=95.78 Aligned_cols=278 Identities=14% Similarity=0.105 Sum_probs=183.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.+......-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++++.. |....+|-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y----P~~a~sW~ 316 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY----PSKALSWF 316 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC----CCCCcchh
Confidence 345555555555566666666666666665542 2344444444445556665555555555554432 44455566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHh
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAER--GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA--G-LQPDVVSYALLINAYGK 325 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~ 325 (599)
++.-.|.-.|+..+|++.|.+.... -..|.-..|.......+.-++|...+...-+. | ..| +--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP----~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP----SLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch----HHHHHHHHHH
Confidence 6666666666666666666654422 12222333333444445555555555444432 1 122 2224445788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCS----PDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~ 399 (599)
.++.+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... .+. .-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999988764 678888888888888889999999999877632 111 1345688888999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
++|+..+++.+... +-|..++.++.-.|...|+++.|.+.|.+.. .+.||..+-..++.
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 99999999988765 4589999999999999999999999999988 46788776666665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-08 Score=103.11 Aligned_cols=266 Identities=15% Similarity=0.152 Sum_probs=178.7
Q ss_pred cCCCCChHHHHHHH-HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 007543 96 RGQPLPKDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV 174 (599)
Q Consensus 96 ~~~~~~~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 174 (599)
..+..|...++..+ .+++..++.+-|- +|..|+..+ .+.+..+|+.++......++.+.+. .|...
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34555655555444 4677777776666 888887654 4677888999999999988888877 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
+|+.|..+|.+.|+... |+...+ -...+...+...|--..-..++..+.- ..+.-||.. +++.
T Consensus 85 tyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c--~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHC--CPHSLPDAE---NAIL 147 (1088)
T ss_pred HHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhccc--CcccchhHH---HHHH
Confidence 99999999999998765 333222 122344445555555554555444321 233445543 3444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHhc-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAERGV-QQSTVTYNSLMS-FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
...-.|-++.+++++..+..... .|..+ ++. .........++........-.|+..+|..++..-...|+.+.|
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 45556777777777766643211 12222 122 2223334444444444322258999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 333 LAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
..++.+|.+.|++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|.
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999988888877777655 78888888999999999999999999888887777555
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-08 Score=100.12 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDE--EKSP-LKPDQK-MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
.+...+...|...|+++.|+.+++..++. ...| ..|... ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---------- 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---------- 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----------
Confidence 45666888899999999999999888753 1111 122222 234467788888888888888877654
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHH
Q 007543 285 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA-----GV-RPTHK-AYNILLDA 357 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~ 357 (599)
+++.......+.-..+++.|...|.+.|++++|...++...+. |. .|.+. .++.+...
T Consensus 270 ---------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 270 ---------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ---------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 2333332222223457888888999999999998888876432 11 11221 34556666
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC---CCCHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRD---RCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF---VPNVITYGT 423 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~~~~~~~ 423 (599)
++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++++.. +- .-....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 77777777777777654332 01111 234555555555666666666655554421 00 111234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----CCC-CcC-HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRV----NGI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|...|.+.+++++|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+..
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55555555555555555544321 111 122 224555555555555555555555444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-08 Score=94.31 Aligned_cols=228 Identities=15% Similarity=0.129 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
+.+.++|.+.|.+.+|...|+.-.+. .|-+.||..|-+.|.+..+...|+.+|.+.++. ++-|+.....+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhHHHH
Confidence 56677777777777777777776664 344556667777777777777777777777642 244444444455666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+|
T Consensus 301 eam~~~~~a~~lYk~vlk~~---------------------------------~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH---------------------------------PINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC---------------------------------CccceeeeeeeeccccCCChHHHHHHH
Confidence 66666666666666655431 234444555566666777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
+++++.| ..+...|+.+.-+|.-.++++-++.-|++....--.|+. ..|..+.......|++..|.+.|+-....+
T Consensus 348 RRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d- 425 (478)
T KOG1129|consen 348 RRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD- 425 (478)
T ss_pred HHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-
Confidence 7777777 346666666666676777777777777666554333332 345555555555666666666666655544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.-+...++.|.-.-.+.|++++|..+++...
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 2355566666666666666666666666655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-05 Score=80.22 Aligned_cols=401 Identities=13% Similarity=0.173 Sum_probs=222.1
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 178 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (599)
+-+.+.+..-++.+.+..++++|+.+.+.-... ..+..-+.-=.-+..+.++.++|...++..... +..+...
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~~----~~~ll~L 115 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKGLDRL----DDKLLEL 115 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhccccc----chHHHHH
Confidence 344444555555666666777766443221110 000000112233344677777777777633221 3335555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHH---HHHHcCCHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPR---------------------------PSALTYQIILK---LFVEANKFKEAE 228 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~---------------------------p~~~t~~~ll~---~~~~~g~~~~A~ 228 (599)
-.+.+.+.|++++|+++|+.+.+.+.. ....+|..+.+ .+...|++.+|+
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~ 195 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAI 195 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHH
Confidence 566677777777777777777544321 11223333332 356779999999
Q ss_pred HHHHHhHhc-------cCC---CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHhcccCC-
Q 007543 229 EVFMTLLDE-------EKS---PLKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS---TVTYNSLMSFETN- 293 (599)
Q Consensus 229 ~~~~~~~~~-------~~~---~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~- 293 (599)
++++...+. +.. ++..+. .+-..|...+-..|+.++|..+|...++...... .+.-|.++...++
T Consensus 196 elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 196 ELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhcccc
Confidence 999888321 101 111111 1223355667788999999999999887754322 1233444443211
Q ss_pred -H-H-HHHHHHHHHHHcCC----------CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 294 -Y-K-EVSKIYDQMQRAGL----------QPDVVSY-ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 294 -~-~-~a~~~~~~m~~~g~----------~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
+ + .++..++....... +...+.. +.++..| .+..+.+.++-..... ..|.. .+.+++....
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t 350 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEAT 350 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHH
Confidence 1 0 12222221111000 0011111 2222222 2334444444333321 13333 3344443332
Q ss_pred --HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHhhCCCCCCHHHHHHHHHHHH
Q 007543 360 --ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR--------RLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 360 --~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~ 429 (599)
+...+.+|..++...-+..........-.++......|+++.|.+++. .+.+.+..|- +...+...+.
T Consensus 351 ~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~ 428 (652)
T KOG2376|consen 351 KVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYY 428 (652)
T ss_pred HHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHH
Confidence 223577788888777654322234556667778889999999999999 5555554554 4456777788
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 430 KVNNLEKMMEIYDKMRVN--GIKPNQT----IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
+.++.+.|..++.+.... .-.+... ++.-+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +
T Consensus 429 ~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d 506 (652)
T KOG2376|consen 429 KIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-D 506 (652)
T ss_pred hccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-C
Confidence 888877777777766531 1112222 34444444567899999999999999854 67778889999999887 4
Q ss_pred HHHHHHHHHhcc
Q 007543 504 RNEANELLGNFN 515 (599)
Q Consensus 504 ~~~A~~~~~~~~ 515 (599)
.+.|..+-+++.
T Consensus 507 ~eka~~l~k~L~ 518 (652)
T KOG2376|consen 507 PEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHhhcCC
Confidence 899999888764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-06 Score=79.11 Aligned_cols=289 Identities=13% Similarity=0.139 Sum_probs=200.7
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007543 186 GGRYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYE 263 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 263 (599)
.++...|...+-.+.... .+-|+.....+.+.+...|+.++|...|++.... .|+ ........-.+.+.|+++
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-----dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-----NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-----ChhhhhhHHHHHHHHHhccCHh
Confidence 455555555554443333 3446667778888888888888888888887632 232 222223333455677777
Q ss_pred HHHHHHHHHHHcC-CCCC-HHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 264 KARKLFALMAERG-VQQS-TVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 264 ~A~~~~~~m~~~g-~~~~-~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
.-..+...+.... .... .+.-..++-...++..|+.+-++.++.. +.+...|..-...+...+++++|.-.|+..+.
T Consensus 284 ~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 284 QDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred hHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 7777776665432 1011 1111222233567778887777777654 23455666667788899999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHhhCCCCCC-H
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML-SAYV-NASDMEGAEKFFRRLKQDGFVPN-V 418 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~ 418 (599)
.. +-+...|..|+..|...|++.+|..+-+...+. .+.+..+.+.+. ..|. ...--++|.+++++-... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 53 467889999999999999999998877765543 233555555442 2222 233457899999987765 454 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
...+.+...|...|..+.+..++++... ..||....+.|.+.+...+.+.+|...|....+ +.|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 4567788889999999999999999885 378999999999999999999999999999988 55643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-06 Score=86.32 Aligned_cols=375 Identities=12% Similarity=0.067 Sum_probs=257.2
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTYQ 212 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 212 (599)
+..++..|..|.-.+..+|+++.+.+.|++....-+. ....|+.+...|...|.-..|..++++-......|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4456778888999999999999999999998765433 678999999999999999999999988765443343 44444
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHhHhc--cCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCC-
Q 007543 213 IILKLFV-EANKFKEAEEVFMTLLDE--EKSPLKPDQKMFHMMIYMYKKA-----------GGYEKARKLFALMAERGV- 277 (599)
Q Consensus 213 ~ll~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 277 (599)
..-+.|. +.+..++++.+-.++++. ...+ ......|..+.-+|... ....++++.+++..+.+.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444 346777777777777651 1111 12233444444444332 124567888888876654
Q ss_pred CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------
Q 007543 278 QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--------- 347 (599)
Q Consensus 278 ~~~~~~~~~ll~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------- 347 (599)
.|+...|-++-.+ .++.+.|....++..+.+...+...|..|.-.+...+++.+|+.+.+.....- ++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 3455555555444 67899999999999988667788899999999999999999999988765431 11
Q ss_pred ------------HHHHHHHHHHHH------H---cC--------------CHHHHHHHHHHHH--------hCC------
Q 007543 348 ------------HKAYNILLDAFA------I---SG--------------MVDQARTVFKCMR--------RDR------ 378 (599)
Q Consensus 348 ------------~~~~~~li~~~~------~---~g--------------~~~~A~~~~~~m~--------~~~------ 378 (599)
..|...++..+- . .| +..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 111122221111 0 00 1111111111110 001
Q ss_pred ---CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 379 ---CS--PD------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 379 ---~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.. |+ ...|......+.+.+..++|...+.+..... .-....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 01 11 1234455567778888899988888776643 446667777778888999999999999998854
Q ss_pred CCCcC-HHHHHHHHHHHHhcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 448 GIKPN-QTIFTTIMDAYGKNKDFDSAVV--WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 448 ~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
.|+ ..+..++...+.+.|+...|.. ++.++.+.+ +-++..|..+...+.+.|+.+.|...+.....
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 566 5588999999999999888888 999999965 55778999999999999999999999887543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-07 Score=89.30 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...|.+.|++++|...|++..+..+. +...|+.+...+...|++++|.+.|++.++.+ +.+..++..+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~ 140 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD----PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHH
Confidence 4555555555556666666655555554332 44555555555555666666666555555422 223445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...|++++|.+.|+...+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555666666655555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-07 Score=89.05 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
...|+.+...+...|++++|...|++.++.. +.+..+|..+...+...|++++|.+.|+...+. .|+..........
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3445555555555555555555555555432 223344444555555555555555555555443 2221111111111
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCc-CHHHHHHHHHHHHhc
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---G--IKP-NQTIFTTIMDAYGKN 466 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p-~~~~~~~li~~~~~~ 466 (599)
+...++.++|...|.+..... .|+...+ . ......|+..++ +.+..+.+. . +.| ....|..+...+.+.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSL 249 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 223445555555554433221 1221111 1 111223333332 233333211 0 011 123566667777777
Q ss_pred CCHhHHHHHHHHHHhC
Q 007543 467 KDFDSAVVWYKEMESC 482 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~ 482 (599)
|++++|+..|++..+.
T Consensus 250 g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 250 GDLDEAAALFKLALAN 265 (296)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-06 Score=84.33 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-APS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...|..+...+...|+.+.+.+.+....+... .++ ..........+...|++++|.+++++..+..+. |...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 34455555566666666666555555443321 111 112222333455667777777777776654322 3333331 1
Q ss_pred HHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 216 KLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 216 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
..+.. .+..+.+.+.+... ....+........+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 12222 23333333333321 11112223334445556666666666666666665531
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTH--KAYNILLDAFAISGMVDQAR 368 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~ 368 (599)
+.+...+..+...|...|++++|...+++...... .++. ..|..+...+...|++++|.
T Consensus 145 ------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 145 ------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred ------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 22344556666667777777777777776655421 1222 23445666667777777777
Q ss_pred HHHHHHH
Q 007543 369 TVFKCMR 375 (599)
Q Consensus 369 ~~~~~m~ 375 (599)
.++++..
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 7777664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-05 Score=77.85 Aligned_cols=365 Identities=12% Similarity=0.127 Sum_probs=230.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG------PRPSALTYQI 213 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ 213 (599)
.|...+......|-++-+..++++-.+. ++..-+--|..++..+++++|-+.+...+... .+.+...|..
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~e 215 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLE 215 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHH
Confidence 4555666666777777777777777764 44556667777777888888777777764321 1234445555
Q ss_pred HHHHHHHcCCHH---HHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007543 214 ILKLFVEANKFK---EAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288 (599)
Q Consensus 214 ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 288 (599)
+.+..++.-+.- ....+++.++. .-+| ...|+.|.+.|.+.|.+++|..+|++....-. ++.-|+.+.
T Consensus 216 lcdlis~~p~~~~slnvdaiiR~gi~-----rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~if 288 (835)
T KOG2047|consen 216 LCDLISQNPDKVQSLNVDAIIRGGIR-----RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIF 288 (835)
T ss_pred HHHHHHhCcchhcccCHHHHHHhhcc-----cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHH
Confidence 555544443322 23334444432 1333 35789999999999999999999998876422 222233332
Q ss_pred cccCC-------------------------HHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 289 SFETN-------------------------YKEVSKIYDQMQRAG-----------LQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 289 ~~~~~-------------------------~~~a~~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
.++.. ++-...-|+.+...+ -+-++..|..-+. +..|+..+-
T Consensus 289 d~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 289 DAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 22111 112222333333221 1123334443333 335667777
Q ss_pred HHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 007543 333 LAVFEEMLDAGVRPT------HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAE 403 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~ 403 (599)
...|.+.++. +.|. ...|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...-.++.+++.|+
T Consensus 367 i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8888887654 2222 23688899999999999999999999887543221 345666666667888999999
Q ss_pred HHHHHHhhCCCC-----------C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 404 KFFRRLKQDGFV-----------P------NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 404 ~~~~~m~~~~~~-----------p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
++.++.....-. + +...|...++.--..|-++....+|+++.+..+. ++.+.......+-.+
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhh
Confidence 999987542111 1 2334666677777789999999999999976543 444444455566778
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHH-hh--cCcHHHHHHHHHhccCCCC
Q 007543 467 KDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLA-KT--ADERNEANELLGNFNHPNN 519 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~-~~--~g~~~~A~~~~~~~~~~~~ 519 (599)
..++++.+++++-+..=-.|+. ..|+..+.-+ .+ .-+.+.|+.++++..+.-+
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8899999999987765334555 5677766433 23 2368999999999877433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-07 Score=80.45 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=165.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
+...|.-.|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++..... +-+-...|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667788999999999999999999886 6667799999999999999999999999988753 335677888888899
Q ss_pred hcCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 395 NASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.. +-.....-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988642 12235678888888999999999999999999763 233567788889999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 474 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+++.....+ .++.......+......|+.+.+.++=..+.
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999998766 4888888888899999999998887766654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.6e-07 Score=78.17 Aligned_cols=198 Identities=17% Similarity=0.113 Sum_probs=138.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
....|.-.|...|++..|.+-+++..+.... +..+|..+...|-+.|..+.|.+.|++..+..+. +....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3456778899999999999999999887532 5678999999999999999999999998886544 6677888888889
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
..|++++|.+.|++.+..... ..-..+|..+.-+..+.|+.+.|...|++..+...
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y--~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp---------------------- 170 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAY--GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP---------------------- 170 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCC--CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc----------------------
Confidence 999999999999998864332 33345788888888889999999998888776521
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
-...+...+.....+.|++-.|..+++.....+ .++..+.-..|..--..|+.+.+.+.=.++.
T Consensus 171 -----------~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 171 -----------QFPPALLELARLHYKAGDYAPARLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred -----------CCChHHHHHHHHHHhcccchHHHHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122233444444555555555555555555444 2555555445555555555555544444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.5e-05 Score=76.30 Aligned_cols=381 Identities=14% Similarity=0.109 Sum_probs=195.1
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+++++|...+.-+...+ +.|...+.-|.-.=.+.|+++.....-....+.. +.....|.....++.-.|++..|..+
T Consensus 89 K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544444332 2333333333223333344444444444443331 11344556666666666666666666
Q ss_pred HHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 196 FRRMQSSG-PRPSALTYQIIL------KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 196 ~~~m~~~g-~~p~~~t~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+++..+.. -.|+...|.... ....+.|..+.|.+.+..-.. .+......-..-...+.+.++.++|..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~----~i~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK----QIVDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh----HHHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 66665543 134444443322 123445555555555444321 1111112222344556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-ccCCHH---HHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHC
Q 007543 269 FALMAERGVQQSTVTYNSLMS-FETNYK---EVS-KIYDQMQRAGLQPDVVSYALL-INAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~-~~~~~~---~a~-~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
+..+..+ .||..-|...+. +.|.+. ++. .+|......- |-...-.-+ ++......-.+..-.++..+.+.
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 6666655 255554444332 222111 111 2333332210 000000000 01111111223344455556666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHH
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDR----------CSPDIC--SYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|+++ ++..+...|-.-...+-..++.-.+. ..| -+|.+. ++..++..+-+.|+++.|..++
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6543 23333333322111111111111111 111 145544 4456677899999999999999
Q ss_pred HHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 007543 407 RRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 407 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 485 (599)
+..+.+ .|+ +..|..=.+.+.+.|++++|..++++..+.+ .||..+-..-..-..++.+.++|.++.....+.|..
T Consensus 395 d~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 395 DLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred HHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 999876 454 3456666788999999999999999999775 466666556677778999999999999999887641
Q ss_pred C--C----HHHHHHHH--HHHhhcCcHHHHHHHHHh
Q 007543 486 P--D----QKAKNILL--SLAKTADERNEANELLGN 513 (599)
Q Consensus 486 p--~----~~~~~~ll--~~~~~~g~~~~A~~~~~~ 513 (599)
. + .-.|..+- .+|.++|++.+|.+-+..
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 1 1 11233332 367788888777665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-06 Score=82.19 Aligned_cols=202 Identities=11% Similarity=0.010 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI--CSYTTM 389 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l 389 (599)
......+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3455567778899999999999999999875 55677888899999999999999999998876421 2333 345678
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCC-CCcCHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITY-G--TLIKGYAKVNNLEKMMEI--Y-DKMRVNG-IKPNQTIFTTIMD 461 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~-~~m~~~~-~~p~~~~~~~li~ 461 (599)
...+...|+.++|..++++...... .+..... + .++.-+...|..+.+.+. + ..-.... -............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 8899999999999999999864332 1222211 1 333334444543333332 1 1111110 0111222335777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 462 AYGKNKDFDSAVVWYKEMESCGFPP--D------QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
++...|+.++|..+++.+......+ . ........-++...|+.++|.+.+....
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999986522110 1 1112222345778999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-05 Score=75.43 Aligned_cols=381 Identities=13% Similarity=0.124 Sum_probs=236.6
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 188 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 188 (599)
+.-+..-+++.-|..++++-...+. .-...+-..+..+|...|++++|..++..+.+.. .++...|..|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4444445678888888887764431 1112344578889999999999999999887754 5678889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 189 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 189 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+.+|..+-.+. .-++..-..++....+.++-++-..+.+.+.+ ...---+|.......-.+++|+++
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999886664 23555667777888888998888888777753 223334566666666789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 007543 269 FALMAERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDV-VSYALLINAYGKARREEEALAVFEE----- 338 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~----~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~----- 338 (599)
|......+ |+-...|.-+.. ..-++-+.++++-..+.- ||. ...|.......+.=.-..|..-.+.
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~ 249 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTAEDEKKELADNI 249 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc
Confidence 99988653 344444444432 234555666666666542 343 3344333322221111111111111
Q ss_pred ---------HHHCC------------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 339 ---------MLDAG------------VRPT-----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 339 ---------m~~~g------------~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
+.+++ +-|. +..--.|+--|.+.+++.+|..+.+++.- ..|-....-.+.
T Consensus 250 ~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv-- 325 (557)
T KOG3785|consen 250 DQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV-- 325 (557)
T ss_pred cccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--
Confidence 11111 0111 11233455567888999999988876642 122222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 393 YVNAS-------DMEGAEKFFRRLKQDGFVPNVI-TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 393 ~~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
++..| ...-|.+.|+..-+++..-|.. --.++..++.-..++++.+-++..+... +..|...--.+..+.+
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence 22222 3556777776654444332222 1234455556667789999988888765 2333333345788999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCcHHHHHHHHHhc
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQKAKN-ILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
..|++.+|+++|-......++ |..+|. .|...|.+.++.+.|..++-++
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999999999999877553333 445555 5567889999999999988776
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-06 Score=80.80 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=130.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHH
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-------SYTT 388 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ 388 (599)
...+.++..+..+++.|++-+....+.. -+..-++....+|...|.+.++...-....+.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3456666667777777777777776653 34444555556677777666666555554444321 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT-------------------------YGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
+..+|.+.++++.|...|.+.......|+..+ ...=...+.+.|++..|.+.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33355566677777777776654433333222 11225567788999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 444 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+++.. +-|...|..-.-+|.+.|.+..|+.-.+...+. .|+. ..|..=..++....+++.|.+.+.+..+.++
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99875 456779999999999999999999998888884 4544 4466666677788889999999988765553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00012 Score=72.77 Aligned_cols=408 Identities=14% Similarity=0.199 Sum_probs=231.1
Q ss_pred CCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007543 97 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 176 (599)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 176 (599)
..+..-+.+.. +.+-...+..+++++.+|.+... ++..+..|..-+..-.+..+++..+++|.+-... .-+...|
T Consensus 15 ~nP~di~sw~~-lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQ-LIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred cCCccHHHHHH-HHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 33333333333 33334445778888888887754 4666777778888888888888888888877665 2366777
Q ss_pred HHHHHHHHh-cCCHHH----HHHHHHH-HHhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHhHhccCC
Q 007543 177 TALMEAYGR-GGRYKN----AEAIFRR-MQSSGPRP-SALTYQIILKL---------FVEANKFKEAEEVFMTLLDEEKS 240 (599)
Q Consensus 177 ~~li~~~~~-~g~~~~----A~~l~~~-m~~~g~~p-~~~t~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~ 240 (599)
..-++--.+ .|+... ..+.|+- +.+.|..+ +...|+..+.. +....+++...+++.+++...
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP-- 167 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP-- 167 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc--
Confidence 766654433 233222 1222332 33444333 22344555543 334456677777888887421
Q ss_pred CCCCCHHHHHHHHHH------HH-------HcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHhcc
Q 007543 241 PLKPDQKMFHMMIYM------YK-------KAGGYEKARKLFALMAE--RGVQQSTVT---------------YNSLMSF 290 (599)
Q Consensus 241 ~~~~~~~~~~~li~~------~~-------~~g~~~~A~~~~~~m~~--~g~~~~~~~---------------~~~ll~~ 290 (599)
+..=...|+-.... .. +...+..|.++++++.. +|......+ |..+|.-
T Consensus 168 -m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 168 -MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11112334432211 00 12245567777766652 333222111 3333321
Q ss_pred c---------CC--HHHHHHHHHHHHH-cCCCCCHHH-HHH----HHHHHHhcCC-------HHHHHHHHHHHHHCCCCC
Q 007543 291 E---------TN--YKEVSKIYDQMQR-AGLQPDVVS-YAL----LINAYGKARR-------EEEALAVFEEMLDAGVRP 346 (599)
Q Consensus 291 ~---------~~--~~~a~~~~~~m~~-~g~~~~~~~-~~~----li~~~~~~g~-------~~~A~~~~~~m~~~g~~~ 346 (599)
. +. ...+.-++++... .+..|++.. |.. .-+.+...|+ -+++..+++..+..-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 00 1112222222221 223333221 111 1122333333 345555555554432223
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHH
Q 007543 347 THKAYNILLDAFAISG---MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP-NVITYG 422 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 422 (599)
+..+|..+.+---..- ..+.....++++...-..--.-+|..++..-.+..-+..|..+|.++.+.+..+ ++..++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334443332211111 244555556655543222223467778888888888999999999999877776 777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHh
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAK 499 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~ 499 (599)
+++..|| .++.+-|.++|+-=.++ .+| ..--...++-+...++-..|..+|++....+++|+. ..|..++..=+
T Consensus 407 A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 407 ALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 8888777 47788999999875543 234 444467788888889989999999999887777766 67999999999
Q ss_pred hcCcHHHHHHHHHhcc
Q 007543 500 TADERNEANELLGNFN 515 (599)
Q Consensus 500 ~~g~~~~A~~~~~~~~ 515 (599)
.-|+...+.++-+++.
T Consensus 484 ~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRF 499 (656)
T ss_pred hcccHHHHHHHHHHHH
Confidence 9999999988887754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00011 Score=73.84 Aligned_cols=385 Identities=13% Similarity=0.110 Sum_probs=221.1
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 007543 103 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL--- 179 (599)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--- 179 (599)
...+..+.+....+.+++|.+....+.... +.+...+..=+-++.+.+++++|+++.+.-.. ..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHH
Confidence 456777777777888888888888777654 55667777777788888999999866554321 1222222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHH
Q 007543 180 -MEAYGRGGRYKNAEAIFRRMQSSGPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYM 255 (599)
Q Consensus 180 -i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~li~~ 255 (599)
..+..+.++.++|+..+. |..+ +..+...-...+.+.|++++|..+|+.+.+.+ .++. ..-..++.+
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAV 155 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHH
Confidence 333446888999998887 3333 33466666777888999999999999997532 2221 111112111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc------ccCCHHHHHHHHHHHHHcCC------CCC-H-------HH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS------FETNYKEVSKIYDQMQRAGL------QPD-V-------VS 315 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~------~~~~~~~a~~~~~~m~~~g~------~~~-~-------~~ 315 (599)
-. +... ..+......| ..+|..+.. ..|++.+|+++++...+.+. ..+ . .+
T Consensus 156 ~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 156 AA-------ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred HH-------hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 11 1111 1222222333 223433332 36899999999988843221 111 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHc------------------------------
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKA----YNILLDAFAIS------------------------------ 361 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~li~~~~~~------------------------------ 361 (599)
-..|...+-..|+-++|..++...++.. .+|... -|.|+.+-...
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q 305 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ 305 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2345566778999999999999998876 444322 12222111000
Q ss_pred ---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 007543 362 ---------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV--NASDMEGAEKFFRRLKQDGFVPNVITYGTL 424 (599)
Q Consensus 362 ---------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 424 (599)
+..+.+.++-.... +..|. ..+..++..+. +.....+|..++....+....-...+.-.+
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~ 382 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR 382 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH
Confidence 00011111110000 11222 23333433222 222466777777776655322234555667
Q ss_pred HHHHHhcCCHHHHHHHHH--------HHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHH----H
Q 007543 425 IKGYAKVNNLEKMMEIYD--------KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQK----A 490 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----~ 490 (599)
+......|+++.|.+++. .+.+.+-.| .+..++...+.+.++-+.|..++.+.... .-.+... +
T Consensus 383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 383 AQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 777888999999999999 555444333 45566777788888777677776666430 0112222 3
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 491 KNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 491 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+.-+...-.+.|+.++|..+++++.+.++
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 33334444567999999999999876554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00038 Score=72.35 Aligned_cols=360 Identities=14% Similarity=0.092 Sum_probs=232.9
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM-EAYG-RGGRYK 190 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~ 190 (599)
...+++..+.+.||...... -.....|+.+.-.|.-.|.-..|..+++.-......|+..+--.++ ..|. +.+..+
T Consensus 334 ~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~e 411 (799)
T KOG4162|consen 334 SRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhh
Confidence 34466777777777766432 1234678889999999999999999999876654335444433333 3333 357788
Q ss_pred HHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 191 NAEAIFRRMQSS--GP--RPSALTYQIILKLFVEA-----------NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 191 ~A~~l~~~m~~~--g~--~p~~~t~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
+++++-.+.... +. ......|..+.-+|... ....++.+.+++.++.+ +.|..+...+.--
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d----~~dp~~if~lalq 487 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD----PTDPLVIFYLALQ 487 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----CCCchHHHHHHHH
Confidence 888877777652 11 12334455555454422 23456777888887643 2333344445556
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHc-CC------------------CCCH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRA-GL------------------QPDV 313 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---ll~~~~~~~~a~~~~~~m~~~-g~------------------~~~~ 313 (599)
|+..++++.|.+...+..+.+-..+...|.. ++++.+++.+|+.+.+..... |. ..-.
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l 567 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEAL 567 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHH
Confidence 7788999999999999988765666666654 456789999999888776653 11 0001
Q ss_pred HHHHHHHHHHHh------cC-----------------CHHHHHHHHHHH--------HHCC---------CC--CC----
Q 007543 314 VSYALLINAYGK------AR-----------------REEEALAVFEEM--------LDAG---------VR--PT---- 347 (599)
Q Consensus 314 ~~~~~li~~~~~------~g-----------------~~~~A~~~~~~m--------~~~g---------~~--~~---- 347 (599)
.|+..++..+-. .+ +..+|.+....+ ...| .. |+
T Consensus 568 ~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~ 647 (799)
T KOG4162|consen 568 DTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWY 647 (799)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHH
Confidence 122222222210 00 111111111111 0001 00 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 348 --HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 348 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
...|......+.+.+..++|...+.+.... .+-....|......+...|..++|.+.|......+ +-++....++.
T Consensus 648 ~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala 725 (799)
T KOG4162|consen 648 LLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 112455666777888888888877777653 23345666666678888999999999999888764 33567888999
Q ss_pred HHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 426 KGYAKVNNLEKMME--IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 426 ~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.++.+.|+..-|.. ++..+.+.+ +-+...|-.+...+.+.|+.++|.+.|....+
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999998877777 999999775 45688999999999999999999999998866
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-05 Score=71.69 Aligned_cols=325 Identities=12% Similarity=0.115 Sum_probs=176.2
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA-LMEAY 183 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~ 183 (599)
+..++.++.+-.++..|.+++..-.+.. +-+....+.|..+|....++..|-..++++... .|...-|.. -.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3444444444556666766665554443 224455666777777777777777777777654 344444432 24555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK--LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
.+.+.+.+|+++...|... |+...-..-+. .....+++..+..+.++.-. .-+..+.+...-...+.|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchheeecccc
Confidence 6667777777777666432 12111111111 12234555566666555531 1233333444444456666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCC-------------CCH-------------
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQ-------------PDV------------- 313 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~-------------~~~------------- 313 (599)
++.|.+-|....+.+--.....||..+.. .++++.|++...++...|++ ||+
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 77776666666655444445556655543 35566666666666554431 111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 314 --VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 314 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- -.+++.+..+-+.-+.... +-...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 11233334467788888888888887422 1244666655443222 1344444444444444432 23457888889
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKV-NNLEKMMEIYDKMR 445 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~ 445 (599)
-.||++.-++-|-.++.+=..... -.+...|+ |++++..+ -..++|.+-++.+.
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999988888765322111 12333343 44444433 46777776665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.7e-05 Score=85.08 Aligned_cols=342 Identities=12% Similarity=0.053 Sum_probs=207.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCC--HHHHHHHHHHH
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPD--QKMFHMMIYMY 256 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~--~~~~~~li~~~ 256 (599)
.+...|+++.+..++..+.......+..........+...|++++|...+....+.-... ..+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 345567787777777665221111122223344455667899999999988775421110 0111 12223344556
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH----HHHH---HhcccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 007543 257 KKAGGYEKARKLFALMAERGVQQSTV----TYNS---LMSFETNYKEVSKIYDQMQRA----GL-QPDVVSYALLINAYG 324 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~---ll~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~ 324 (599)
...|++++|...+++....-...+.. ..+. .....|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 78899999999999887632111211 1111 112368999998888877642 11 111234566677888
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 007543 325 KARREEEALAVFEEMLDA----GVR--P-THKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSP--DICSYTTMLSAY 393 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~li~~~ 393 (599)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 211 1 2234555666777889999999998876543 1112 233445566678
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHH
Q 007543 394 VNASDMEGAEKFFRRLKQD--GFVPNVI--T--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYG 464 (599)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~ 464 (599)
...|+.++|...+...... ....... . ....+..+...|+.+.|.+.+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887532 1111111 1 011224455688999999998775532111111 12456677788
Q ss_pred hcCCHhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCc
Q 007543 465 KNKDFDSAVVWYKEMES----CGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 523 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 523 (599)
..|++++|...+++... .|..++. .+...+..++.+.|+.++|...+.+..+.....+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999988864 2333322 34555667889999999999999887655444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.8e-05 Score=71.37 Aligned_cols=291 Identities=15% Similarity=0.194 Sum_probs=201.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI-ILKLF 218 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~ 218 (599)
-+.+.+..+.+..++++|.+++..-.++.. .+......|..+|....++..|-+.++++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 456777778889999999999998888742 27888999999999999999999999999764 455555533 24566
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY--MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
.+.+.+.+|+++...|.+ .++...-..-+. .....+++..+..++++....|-......-..++-..|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLD------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcC------CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 788999999999998863 122222111122 233567888888888887654332222233334445789999
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHH--------HHHHH
Q 007543 297 VSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-------------PTHK--------AYNIL 354 (599)
Q Consensus 297 a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~--------~~~~l 354 (599)
|.+-|+...+ .|.+| ...|+.-+.. .+.|++..|+++..+++++|++ ||+. .-+.+
T Consensus 163 AvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999998887 45554 5677766644 4678999999999999888753 2211 12333
Q ss_pred HH-------HHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007543 355 LD-------AFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426 (599)
Q Consensus 355 i~-------~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 426 (599)
+. .+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.-. .+++.+...-+.-+.+.+. -...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 33 346788999999888888543 33557777766543222 2445555555555555543 45688999999
Q ss_pred HHHhcCCHHHHHHHHHH
Q 007543 427 GYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~ 443 (599)
.||+..-++-|-.++-+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 99999999998888765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-05 Score=77.22 Aligned_cols=162 Identities=16% Similarity=0.213 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 291 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (599)
...|.+|+.+++.++.... -.--|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+++.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 3567888888888876532 23346778888999999999999886542 345678889999999999888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 371 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 450 (599)
Q Consensus 371 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (599)
-.+.. |.......|.+-..-+-++|++.+|.++|-.+- .|+. .|.+|-+.|..+..+++..+-.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 76654 334445566666667778888888888774432 3442 4567777777777777665532
Q ss_pred cC--HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 451 PN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 451 p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|+ ..|...+..-|-..|++..|..-|-+.
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 23 234455555566666666666655444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00011 Score=84.18 Aligned_cols=337 Identities=12% Similarity=0.059 Sum_probs=209.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCH--HHHHHHHHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------RPSA--LTYQIILKL 217 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~p~~--~t~~~ll~~ 217 (599)
..+...|+++.+...++.+.......+..........+...|++++|..++......-. .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211111222334445556678999999999987754311 1111 122223345
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHH--HHHH---Hh
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ---QSTV--TYNS---LM 288 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~--~~~~---ll 288 (599)
+...|++++|...++..++....+... .....+.+...+...|++++|...+.+.....-. +... .+.. +.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 668899999999999987521111000 1234566777788899999999999888643111 1111 1111 11
Q ss_pred cccCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 007543 289 SFETNYKEVSKIYDQMQR----AGLQ--P-DVVSYALLINAYGKARREEEALAVFEEMLDAG--VRP--THKAYNILLDA 357 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~li~~ 357 (599)
...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 236899999888877654 2211 1 23345566667788899999999998875431 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRDRCS-PDICSY-----TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGY 428 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~ 428 (599)
+...|+.++|...+++....... .....+ ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542101 111111 11224456689999999998776543211111 1245677788
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 429 AKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
...|+.++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988742 33332 236667778889999999999999999774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-06 Score=84.35 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA----ISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++. ....+.+|..+|+++... ..+++.+.+.+
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~ 207 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHH
Confidence 334445555555555555555555554431 222 2222222221 122455555555554432 33455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL-EKMMEIYDKMR 445 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 445 (599)
..++...|++++|.+++.+..+.+ +-+..+...++.+....|+. +.+.+++.++.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555555555555555554433 22344444455554555544 34444555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00025 Score=66.67 Aligned_cols=307 Identities=11% Similarity=0.110 Sum_probs=197.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL---MEAYGRGGRYKNAEAIFRRMQSSGPRPSALT-YQIILKLF 218 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~ 218 (599)
-|...+.-.|++.+|+.-|....+. |+..|-++ ...|...|+-.-|+.-+.+.++ .+||-.. -..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 4566667778888888888877765 44444443 4467777888888887777776 4566432 12233456
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 298 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~ 298 (599)
.+.|.++.|..-|+.+++.+ |+. +....++.+.-..++-..+..+++.. ...|+...++
T Consensus 117 lK~Gele~A~~DF~~vl~~~-----~s~---~~~~eaqskl~~~~e~~~l~~ql~s~-------------~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE-----PSN---GLVLEAQSKLALIQEHWVLVQQLKSA-------------SGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC-----CCc---chhHHHHHHHHhHHHHHHHHHHHHHH-------------hcCCchhhHH
Confidence 78888888888888887542 211 11222333333333333333332221 1235666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 299 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 299 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.....+++.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++...++-.+.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 6666666653 4577777788888888888888888777776554 445556666677778888888888888777754
Q ss_pred CCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 007543 379 CSPDICS----YTTM---------LSAYVNASDMEGAEKFFRRLKQDGFVPNVIT---YGTLIKGYAKVNNLEKMMEIYD 442 (599)
Q Consensus 379 ~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~ 442 (599)
.||.-. |-.+ +......+++.++++-.+...+....-..+. +..+-.++...|++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 455321 1111 1123456778888888877776543322223 3445566677788999999988
Q ss_pred HHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 443 KMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 443 ~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
+..+. .|| ..++.--..+|.-...+++|+.-|+.+.+.
T Consensus 332 evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 332 EVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88854 555 678888888898889999999999988873
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.5e-08 Score=60.64 Aligned_cols=33 Identities=33% Similarity=0.678 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 167 KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 167 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
+|+.||+.+||+||.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367777777777777777777777777777776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-05 Score=78.48 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=101.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
-+.+......|.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 3455566778899999998887653 233457778889999999999999986542 34567888999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
++.|.++-.+.. |.......|-.-..-+-+.|++.+|.++|-.+. .|+. .|..|-++|..+..+++..+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 999998877654 334455667666677788899999988876552 4553 34567777777777776655
Q ss_pred H
Q 007543 479 M 479 (599)
Q Consensus 479 m 479 (599)
-
T Consensus 876 ~ 876 (1636)
T KOG3616|consen 876 H 876 (1636)
T ss_pred h
Confidence 3
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00025 Score=66.59 Aligned_cols=315 Identities=15% Similarity=0.121 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL---KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 248 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 248 (599)
++.-..-+...+...|++.+|+.-|...++- |+..|.++. ..|...|+-..|+.-+.++++ +.||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----lKpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----LKPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----cCccHHH
Confidence 4444556777888899999999999998653 444455544 568889999999999998885 3677433
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007543 249 F-HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 327 (599)
Q Consensus 249 ~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 327 (599)
- -.-...+.+.|.++.|..-|+...+.....+. ..++.+-+.... ........+..+.-.|
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~------------~~eaqskl~~~~------e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL------------VLEAQSKLALIQ------EHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCC
Confidence 2 22345778999999999999998876321111 111111111111 1112334455667789
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
+...|+.....+++.. +-|...|..-..+|...|.+..|+.-++...+.. ..++.++.-+-..+...|+.+.++...+
T Consensus 170 D~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred chhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999998874 5677888888999999999999998888776643 3466777778888999999999999999
Q ss_pred HHhhCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHhH
Q 007543 408 RLKQDGFVPNVIT----YGTL---------IKGYAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 408 ~m~~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~ 471 (599)
+..+. .||... |-.| +......+++-++.+-.+...+....... ..+..+-.++...|++.+
T Consensus 248 ECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 98875 466543 2111 12233456777777777777755322112 244556677788999999
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 472 AVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
|++...+.++ +.|| ..++---..+|.-...++.|+.-+++..+.+.
T Consensus 326 AiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 326 AIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999988 6676 45565556777777778888777777654433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-05 Score=83.31 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=202.3
Q ss_pred CCHHhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------C
Q 007543 136 FNEMDFLMLIT--AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-G--------P 204 (599)
Q Consensus 136 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g--------~ 204 (599)
.|+.+--.+++ .|.-.|+++.|.+-.+.+. +...|..|.+.|.+..+++-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555554 5777899999988877665 5678999999999998888888777776431 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
.|+ .+-..+.-.....|.+++|+.+|++... |..|=..|-..|.+++|.++-+.--...++.+-.-|
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR------------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 222 2222233345677888888888888752 344455677788888888776543333334444555
Q ss_pred HHHhcccCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007543 285 NSLMSFETNYKEVSKIYDQMQ----------RAG---------LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 345 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~----------~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (599)
..-+.+.++.+.|++.|++.. ... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 556666667766666655321 111 012334444455555667777777777776643
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
|-.++...|-.|+.++|-++-++- | |......+...|-..|++.+|..+|.+... |...|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 445666777788888888776543 2 666777788889999999999998887642 22222
Q ss_pred HHHHh---------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH--------HHhC
Q 007543 426 KGYAK---------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE--------MESC 482 (599)
Q Consensus 426 ~~~~~---------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~~ 482 (599)
+.|-. ..+.-.|-++|++. |.. ....+..|-+.|.+.+|+++.=+ ++..
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 22221 12333444455443 211 12234567788888887765422 2222
Q ss_pred CCC--CCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 483 GFP--PDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 483 g~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
++. .|+...+.-.+.+....++++|..++-..
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333 35566666667777778888887776553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.6e-08 Score=58.86 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=12.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 344 VRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
+.||..+|++||++||+.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333444444444444444444444444333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.8e-07 Score=86.03 Aligned_cols=246 Identities=11% Similarity=0.089 Sum_probs=106.0
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCC
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETN 293 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~ 293 (599)
-+.-.|++..++.-.+ .. ...-..+......+.++|...|+++.++ .++.... .|.......+... ..+
T Consensus 10 n~fy~G~Y~~~i~e~~-~~---~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LK---SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CH---TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTT
T ss_pred HHHHhhhHHHHHHHhh-cc---CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccc
Confidence 3444677777776555 22 1111223344555677777788766543 2332222 3443333222222 122
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
-+.+..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22222222222211111 12222222223344455666665555331 234444455555566666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+
T Consensus 156 ~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 65543 222 222223332221 12455555566555443 24455555555555555566666655555554332
Q ss_pred CCcCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHh
Q 007543 449 IKPNQTIFTTIMDAYGKNKDF-DSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 481 (599)
+-|..+...++-+....|+. +.+.+++.++..
T Consensus 232 -~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 -PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 11233444455554555554 334445555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00083 Score=71.68 Aligned_cols=279 Identities=14% Similarity=0.164 Sum_probs=173.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.....++-+++|..+|++. ..+....+.|+. ..+.++.|.+.-++.- ...+|..+..+-.+.|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n---------~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN---------EPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC---------ChHHHHHHHHHHHhcC
Confidence 3444556677777777664 234444555543 3455666666655542 2346777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 337 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (599)
...+|++-|-+. .|...|..++.. .+++++..+.+....+..-+|.+. +.||-+|++.++..+.++++
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI- 1189 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-
Confidence 777777665432 245556555553 466777777766666655445433 45777777777776655443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007543 338 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 417 (599)
Q Consensus 338 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 417 (599)
.-|+......+.+-|...|.++.|.-+|.. +.-|..|...+...|++..|...-++. .+
T Consensus 1190 ------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1190 ------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred ------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 146666677777777777777777766653 334667777777778887777655542 25
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLS 496 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 496 (599)
..||..+-.+|...+.+.-| +|.-.++.....-..-++.-|...|.+++-+.+++.... +.- ....|+-|.-
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAI 1321 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHH
Confidence 66777777777665554332 343334445566778889999999999998888877643 222 2234555555
Q ss_pred HHhhcCcHHHHHHHHHhc
Q 007543 497 LAKTADERNEANELLGNF 514 (599)
Q Consensus 497 ~~~~~g~~~~A~~~~~~~ 514 (599)
.|++- +.++..+.++-.
T Consensus 1322 LYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred HHHhc-CHHHHHHHHHHH
Confidence 56554 356665555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00013 Score=71.28 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS---GM----VDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~m~~~~~~p~~~ 384 (599)
|..+|+....++.+.|+++++++.++++++.+ ..+...|+.....+.+. |. .++++....+++... +-|..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 44445555555555555555555555555544 33344444443333332 11 234444444444432 33445
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 385 SYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 385 ~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
.|+.+...+... +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555542 23345666666655443 2355566666666664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.1e-05 Score=78.75 Aligned_cols=257 Identities=14% Similarity=0.122 Sum_probs=137.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++.++.+ +-|..+.-+|.-.|...|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld----P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD----PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC----CccHHHHHHHHHHHhhhhh
Confidence 356778888888888888777655 77788888888888888888888888887654 5566777778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 339 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (599)
-..|++.++.-..... .|..+... .+... +. ..+..........++|-++
T Consensus 369 q~~Al~~L~~Wi~~~p-----~y~~l~~a~~~~~~~---------------~~--------~s~~~~~~l~~i~~~fLea 420 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKP-----KYVHLVSAGENEDFE---------------NT--------KSFLDSSHLAHIQELFLEA 420 (579)
T ss_pred HHHHHHHHHHHHHhCc-----cchhccccCcccccc---------------CC--------cCCCCHHHHHHHHHHHHHH
Confidence 8888888877654321 01111110 00000 00 0111111112222233222
Q ss_pred -HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 340 -LDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 340 -~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
...+..+|..+...|.-.|--.|.+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++. +|+.
T Consensus 421 a~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~y 497 (579)
T KOG1125|consen 421 ARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGY 497 (579)
T ss_pred HHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCe
Confidence 222223444555555555555555555555555554432 224455555555555555555555555555543 3332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C------CCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 419 -ITYGTLIKGYAKVNNLEKMMEIYDKMRV---N------GIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 419 -~~~~~li~~~~~~g~~~~A~~~~~~m~~---~------~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
.+...|.-.|...|.+++|.+.|-..+. . ...++..+|.+|=.++.-.++.|.+.+
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1222344455555555555555544331 1 111233455555555555555554433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-06 Score=83.53 Aligned_cols=209 Identities=14% Similarity=0.106 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+...+.+.|-...|..+|+++- .|..+|.+|+..|+..+|..+..+..++ +|+..-|..+.....
T Consensus 403 ~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34456667777777777777663 4666777777777777777776666552 344444444444433
Q ss_pred C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 293 N---YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 293 ~---~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
+ +++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.. +.-..+|-.+.-+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 2 33333333332211 00111111122445555555554444332 2333444444444445555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
.|..-... -+-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++.
T Consensus 541 aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 55444332 11123445555555555555555555555554444 2233334344444444555555555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00018 Score=70.31 Aligned_cols=124 Identities=8% Similarity=0.047 Sum_probs=84.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF- 224 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~- 224 (599)
.+.+.++.++|+.+.+++.+.... +..+|+..-.++...| +++++++.++++.+..++ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 344456777888888887776322 4556776666666666 568888888888776554 555566555555555552
Q ss_pred -HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 225 -KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 225 -~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+++..+++.+++.+ +.|..+|+.....+.+.|+++++++.++++.+.+
T Consensus 124 ~~~el~~~~kal~~d----pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLD----AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 56777777777644 5677778877777777888888888888877654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.002 Score=64.51 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-SYTTMLSAYVNAS 397 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g 397 (599)
+..+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...-. .|... -...-...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 334555566666777777665544333222 12223333443333332221 22221 1112245677889
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
++..|+..|.++++.. +-|...|....-+|.+.|.+..|++-.+...+. .|+ ...|.-=..++.-..+|+.|.+.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876 458889999999999999999999888887765 344 446655566677778899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH
Q 007543 477 KEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
.+..+ ..|+..-+.--+.-|
T Consensus 450 ~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHH
Confidence 99887 456654444333333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0001 Score=80.97 Aligned_cols=231 Identities=12% Similarity=0.094 Sum_probs=155.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 321 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 321 (599)
|-....|-..+......++.++|++++++.+.. +++-.. --...|.++++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee-----------------------------EKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE-----------------------------EKLNIWIAYLN 1505 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-----------------------------HHHHHHHHHHh
Confidence 334566777888888888888888888887653 000000 01234556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 401 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 401 (599)
.-..-|.-+...++|+++.+.. .-...|..|...|.+.+.+++|.++++.|.++- ......|...+..+.++.+-+.
T Consensus 1506 lEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence 6566667777777777776642 223467777788888888888888888887652 2456677777788888888888
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 402 AEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 402 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
|..++++..+.-.+- ........+..-.+.|+.+.+..+|+...... +-....|+.+|+.=.++|+.+.+..+|++..
T Consensus 1583 a~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1583 ARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 888888777652111 23334455566667888888888888877541 3345688888888888888888888888888
Q ss_pred hCCCCCCH--HHHHHHHHHHhhcCcHHH
Q 007543 481 SCGFPPDQ--KAKNILLSLAKTADERNE 506 (599)
Q Consensus 481 ~~g~~p~~--~~~~~ll~~~~~~g~~~~ 506 (599)
..++.|-. ..|.-.+..-...|+-+.
T Consensus 1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 87777755 346666666666665443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00074 Score=72.12 Aligned_cols=362 Identities=15% Similarity=0.089 Sum_probs=202.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHc
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI--ILKLFVEA 221 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~ 221 (599)
+.-.|.+.++...|..-|+...+..+. |...|..+..+|.+.|++..|+++|.+.... .|+. +|.. .....+..
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDN 643 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHh
Confidence 445566777777777777777766533 7888888999999999999999988887653 3332 2222 22345677
Q ss_pred CCHHHHHHHHHHhHhcc---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHhccc
Q 007543 222 NKFKEAEEVFMTLLDEE---KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE-------RGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~ll~~~ 291 (599)
|.+.+|...+...+... ..+...-..++-.+...+...|-..+|..++++-++ .....+...|-.+-.++
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 88888888877766421 011111122333333333334444444444443322 11111111111111000
Q ss_pred -------CCH--HHHHH-HHHHHHHcCC--------------------CCCHHHHHHHHHHHHh----cC----CHHHHH
Q 007543 292 -------TNY--KEVSK-IYDQMQRAGL--------------------QPDVVSYALLINAYGK----AR----REEEAL 333 (599)
Q Consensus 292 -------~~~--~~a~~-~~~~m~~~g~--------------------~~~~~~~~~li~~~~~----~g----~~~~A~ 333 (599)
.+. .-... ++.+....+. ..+..+|..|+..|.+ .+ +...|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 000 00000 0111111111 1123334444433333 11 234677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
..+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-... .+....+|..+.-.+.+..+++.|...|.......
T Consensus 804 ~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 804 RCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC
Confidence 7777776653 4566677766544 5567777777776655433 24466778888888888999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--H--HCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--------
Q 007543 414 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM--R--VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES-------- 481 (599)
Q Consensus 414 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 481 (599)
+.|...|-.....-...|+.-++..+|..- . ..|--|+..-|-+.......+|+.++-+.-.+++..
T Consensus 881 -P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~y 959 (1238)
T KOG1127|consen 881 -PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYY 959 (1238)
T ss_pred -chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHH
Confidence 335666655555555678888888888762 2 234455555555555556677776665444443321
Q ss_pred -CCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 482 -CGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 482 -~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.|.+-+...|.+.....-+.+.+++|..+..+
T Consensus 960 f~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 960 FLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 23344557788888888888888877766555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00019 Score=78.92 Aligned_cols=239 Identities=14% Similarity=0.191 Sum_probs=166.1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP---DQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
|++.....+. +...|...|......++.+.|.+++++++.. .++.- -...|.++++.-..-|.-+...++|+++
T Consensus 1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 4555554332 5567888888889999999999999999752 11111 1235566666555556556666666655
Q ss_pred HHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007543 273 AERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN 352 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 352 (599)
.+. . -.-..|..|...|.+.++.++|.++++.|.+.- .-....|.
T Consensus 1524 cqy--------------------------------c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~ 1568 (1710)
T KOG1070|consen 1524 CQY--------------------------------C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWI 1568 (1710)
T ss_pred HHh--------------------------------c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHH
Confidence 542 1 123457788888888888899999998887763 35677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 353 ILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
..++.+.+..+-+.|..++.+..+. -|. .....-.+..-.+.|+.+.+..+|+......+ --...|+..++.-.
T Consensus 1569 ~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1569 MYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEI 1645 (1710)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHH
Confidence 8888888888888888888887764 232 33344455566778899999999988876642 36678888899988
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHhHHHHH
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQ--TIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 475 (599)
+.|+.+.+..+|++....++.|-. ..|.-.+..=-.+|+-..+..+
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999999998888777653 2566666555556665444433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-05 Score=77.66 Aligned_cols=235 Identities=17% Similarity=0.179 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
..-..+...+...|-...|+.+|++.. .|.-++.+|+..|+.++|..+..+.++. +||...|..+.
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek-----~~d~~lyc~LG 464 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK-----DPDPRLYCLLG 464 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC-----CCcchhHHHhh
Confidence 344567788888999999999998864 3666788899999999999998888752 78888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 333 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (599)
+.....--+++|.++++....+ -...++..+-..+++.++.+.|+.-.+.. +-...+|-.+..+..+.++++.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar----A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR----AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH----HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8887777788999988876543 22333334444678888888888777654 235678888888889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
+.|..-.... +-+...||.+-.+|.+.|+-.+|...+++..+-. .-+...|-..+....+.|.+++|.+.+.++....
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999987753 4456689999999999999999999999998876 4455667777778889999999999999886421
Q ss_pred -CCCCHHHHHHHHHHHH
Q 007543 414 -FVPNVITYGTLIKGYA 429 (599)
Q Consensus 414 -~~p~~~~~~~li~~~~ 429 (599)
-..|..+...++....
T Consensus 618 ~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhcccchhhHHHHHHHH
Confidence 1124444444444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-05 Score=77.61 Aligned_cols=210 Identities=11% Similarity=0.052 Sum_probs=142.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-------HHHHHcCCHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILL-------DAFAISGMVDQART 369 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-------~~~~~~g~~~~A~~ 369 (599)
|+..+.+..+.. +-|......|.-.|...|.-.+|+..++..+.... |-...-..=. ..+.....+....+
T Consensus 338 ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~ 415 (579)
T KOG1125|consen 338 AISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQE 415 (579)
T ss_pred HHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHH
Confidence 333444444332 23556777888888899999999999998876431 1100000000 01111222344455
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 370 VFKCMR-RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 370 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
+|-++. ..+..+|+.....|.-.|.-.|++++|.+.|+.++... +-|..+||-|...++...+.++|+..|++.++
T Consensus 416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-- 492 (579)
T KOG1125|consen 416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ-- 492 (579)
T ss_pred HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--
Confidence 555544 34545788888888889999999999999999999875 34788899999999999999999999999996
Q ss_pred CCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHh---CC------CCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 449 IKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMES---CG------FPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 449 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g------~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
++|+. .+.-.|.-.|...|.+++|.+.|-..+. .+ -.++...|..|=.++...++.|.+.+..
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 47874 4667788889999999999999877653 21 1123456777766777777766555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-05 Score=71.80 Aligned_cols=183 Identities=15% Similarity=0.046 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSY 386 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~ 386 (599)
....+..+...+.+.|++++|...|+++.... +.+. .++..+...+.+.|++++|...++++.+.... |.. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45567777778888888999998888887653 2222 35677778888888999999888888765311 111 234
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 007543 387 TTMLSAYVNA--------SDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 457 (599)
Q Consensus 387 ~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (599)
..+..++... |+.++|.+.|+.+.... |+. ..+..+.... . ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---HHH------HH--------HHHHH
Confidence 4444555544 67788888888887653 332 2221111110 0 000 00 00112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCG--FPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+...+.+.|++++|...+++..+.. -+.....+..+..++.+.|++++|..+++.+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556777888888888888876631 11123566777778888888888888777764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0001 Score=78.34 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=218.6
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~ 216 (599)
...|..|...|+...+...|.+.|++..+.+.. +..++-.....|++...++.|..+.-..-+... ..-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 456889999999999999999999999987643 788999999999999999999998333222111 111223444555
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--H-HHH-HhcccC
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV--T-YNS-LMSFET 292 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~-~~~-ll~~~~ 292 (599)
.|.+.++...|..-|+..++.+ +.|...|..+..+|..+|++..|+++|.+..... |+.. . +-+ +....|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhh
Confidence 6778899999999999998654 6788999999999999999999999999887652 3321 1 122 223468
Q ss_pred CHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAG------LQPDVVSYALLINAYGKARREE-------EALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
.++++...+....... ..--..++..+...+.-.|-.. ++++.|.-........+...|-.+-++|.
T Consensus 645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 8888888887766421 1111233333333333334333 33333333333322233333333322221
Q ss_pred ---HcC--CHH-HHHH-HHHHHHhCCCC--------------------CCHHHHHHHHHHHHh----c----CCHHHHHH
Q 007543 360 ---ISG--MVD-QART-VFKCMRRDRCS--------------------PDICSYTTMLSAYVN----A----SDMEGAEK 404 (599)
Q Consensus 360 ---~~g--~~~-~A~~-~~~~m~~~~~~--------------------p~~~~~~~li~~~~~----~----g~~~~A~~ 404 (599)
... -+. .-.. ++.+....+.- .+..+|..++..|.+ . .+...|..
T Consensus 725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~ 804 (1238)
T KOG1127|consen 725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR 804 (1238)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence 111 000 0001 11112111111 123344444444333 1 23345666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 484 (599)
.++..++.. .-+..+|+.|.-. +..|++.-|..-|-+-.... +.+..+|..+.-.+.++.+++.|...|..... +
T Consensus 805 c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--L 879 (1238)
T KOG1127|consen 805 CCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--L 879 (1238)
T ss_pred HHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--c
Confidence 666665432 3366666666554 55567777776666655432 33456788888788888888888888888877 4
Q ss_pred CCCH-HHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 485 PPDQ-KAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 485 ~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.|+. ..|....-.....|+.-++..++..
T Consensus 880 dP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 880 DPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred CchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4543 4455444445566777677666655
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-05 Score=72.58 Aligned_cols=153 Identities=10% Similarity=-0.053 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHH
Q 007543 346 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI---CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV-PN-VIT 420 (599)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~-~~~ 420 (599)
.....+..+...+...|++++|...|+++.... +.+. ..+..+..++...|++++|...++++.+.... |. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 445567778888889999999999999887652 1122 46677788889999999999999998865322 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 421 YGTLIKGYAKV--------NNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 421 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
+..+..++.+. |+.++|.+.|+++.+. .|+.. .+..+..... ... ... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~~-------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RLA-------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HHH-------HHH
Confidence 55555566554 6788888888888754 34432 3322221111 000 000 012
Q ss_pred HHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 492 NILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 492 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
..+...+.+.|++++|...+++..+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 2456678899999999999998764433
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00074 Score=72.01 Aligned_cols=301 Identities=12% Similarity=0.113 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
|+..-...+.++...+-+.+-+++++++.-.+.. -+...-+.|+-...+ -+.....++.+++-.-+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD----a~~---- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD----APD---- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC----chh----
Confidence 4555566777888888888888888887643211 111122333322222 34445555555553111 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007543 250 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 329 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 329 (599)
+.......+-+++|..+|++.. .+....+.|+.--++.++|.+.-+... ....|+.+..+-.+.|.+
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 3345556777888888887754 256667777777777777776665542 345688888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
.+|++-|-+. .|+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.++..+.++++.
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--
Confidence 8887766543 366778888888888888888888877776665555544 467778888888777665543
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------CCCcCHHHHHHHHHHHHhcCCH
Q 007543 410 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--------------------GIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~ 469 (599)
.||......+.+-|...|.++.|.-+|...... .-..+..+|..+-.+|...+.+
T Consensus 1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred -----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 456666666666666666666665554432100 0001233444444444444443
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 470 DSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.-| +|-..++.....-..-|+..|...|-+++...+++..
T Consensus 1266 rlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1266 RLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 322 1222223334444566777777788888888777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00011 Score=66.70 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
..+-..+...|+-+.+..+....... .+.|.......+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33344444455555555444443221 12333444445555555566666666666555443 44555666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHH
Q 007543 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 511 (599)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 511 (599)
|++++|..-|.+..+.. .-+...++.+...+.-.|+.+.|..++......+ .-|...-..|.-+...+|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666665555431 1224455555555555666666666665555422 223444445555555566666665554
Q ss_pred Hh
Q 007543 512 GN 513 (599)
Q Consensus 512 ~~ 513 (599)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.6e-05 Score=67.48 Aligned_cols=157 Identities=14% Similarity=0.150 Sum_probs=114.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
-+..|.+.|+++......+.+.. |. ..+...++.+++...++...+.. +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34568888888776544433221 11 01223566778877777776653 5678888888899999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGY-AKVNN--LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
+++|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+...|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999988875 33777888888764 66676 589999999998764 33577888888899999999999999
Q ss_pred HHHHHhCCCCCCHHHH
Q 007543 476 YKEMESCGFPPDQKAK 491 (599)
Q Consensus 476 ~~~m~~~g~~p~~~~~ 491 (599)
|+++.+.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99998753 5555433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-05 Score=66.32 Aligned_cols=99 Identities=8% Similarity=-0.103 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 007543 386 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 465 (599)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (599)
+......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.+ +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777777777777777777654 3466777777777777777777777777777643 3356677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCH
Q 007543 466 NKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 466 ~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
.|++++|+..|+...+ +.|+.
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCC
Confidence 7778777777777776 44544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00068 Score=70.74 Aligned_cols=224 Identities=13% Similarity=0.132 Sum_probs=149.8
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------C-CCCHHHHHHHHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG--------Y-APSVVSHTALMEAYG 184 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~-~p~~~~~~~li~~~~ 184 (599)
..|+-+.|.+....+. +...|..+..++.+..+++-|.-.+-.|.... . .|+ ..=....-...
T Consensus 740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 3455555555554443 34678899999999999988877776665321 0 111 22222333445
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..|.+++|+.+|++-++ |..|=+.|-..|.+++|.++-+.-- . ..=..||......+-..++.+.
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~D---R---iHLr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKD---R---IHLRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcc---c---eehhhhHHHHHHHHHhhccHHH
Confidence 78999999999998765 4456677888999999998865431 1 1123467777777778888999
Q ss_pred HHHHHHHHHHc----------C-----------CCCCHH-HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007543 265 ARKLFALMAER----------G-----------VQQSTV-TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 322 (599)
Q Consensus 265 A~~~~~~m~~~----------g-----------~~~~~~-~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 322 (599)
|++.|++.... . -.|... -|...+...|..+.|+.+|..... |-++++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 98888764211 0 011111 133344556777777777776653 5567788
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.|-.|+.++|-++-++ .-|....-.|...|-..|++.+|...|.+..
T Consensus 948 ~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred EeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8889999999887665 3366677788899999999999999887654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00037 Score=68.90 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=102.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTYQIILKLFVEANKFK 225 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~ 225 (599)
.+...|++++|++.++.+... .+.|+..+......+.+.++..+|.+.++++... .|+ ......+..+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 344577888888888887765 2335666667778888888888888888888775 344 555566777888888888
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQ 305 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~ 305 (599)
+|..+++.....+ +.|...|..|..+|...|+..+|.....+.... .|++++|...+....
T Consensus 392 eai~~L~~~~~~~----p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---------------~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND----PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---------------AGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC----CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---------------CCCHHHHHHHHHHHH
Confidence 8888888876533 667778888888888888888887777665543 477777777777766
Q ss_pred Hc
Q 007543 306 RA 307 (599)
Q Consensus 306 ~~ 307 (599)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00015 Score=65.98 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...|++.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 556667777788777777777654332 455666677888888899999999999888764 377888999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
|+.++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+ .-|..+-..+.-+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999998888764 2366677888888888899999999998888654 336777778888888999999998877
Q ss_pred HHH
Q 007543 477 KEM 479 (599)
Q Consensus 477 ~~m 479 (599)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.2e-05 Score=68.94 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=98.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FVEANK--FKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~--~~~A 227 (599)
.++.+++...++...+.. +.|...|..|...|...|++++|...|++..+..+. +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 667788888888877765 348889999999999999999999999999887544 67777777776 467677 5899
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
.+++++.++.+ +.+..++..+...+.+.|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD----ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999998754 5577888889999999999999999999988753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-05 Score=64.06 Aligned_cols=93 Identities=16% Similarity=0.044 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|+..|++.....+ .+..++..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3334444444455555555555444432 12444444444444455555555555554444322 134444444444444
Q ss_pred cCCHHHHHHHHHHhH
Q 007543 221 ANKFKEAEEVFMTLL 235 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~ 235 (599)
.|+.++|...|+..+
T Consensus 105 ~g~~~eAi~~~~~Al 119 (144)
T PRK15359 105 MGEPGLAREAFQTAI 119 (144)
T ss_pred cCCHHHHHHHHHHHH
Confidence 445555544444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=72.75 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+-.+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|+.. ++++|..++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 44567778888888888888888888888877 66788888888888888 888888888777653
Q ss_pred HHHhcCCHHHHHHHHHHHhhC
Q 007543 392 AYVNASDMEGAEKFFRRLKQD 412 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~ 412 (599)
+...+++..+.++|.++...
T Consensus 179 -~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 -FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred -HHhhhcchHHHHHHHHHHhc
Confidence 55566777777777777665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0004 Score=75.71 Aligned_cols=145 Identities=14% Similarity=0.221 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV-----QQSTVT 283 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~ 283 (599)
..+..+..+|-+.|+.++|..+++++++.+ +.|..+.|.+...|... ++++|++++.+...+-+ ..-...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 566677778888899999999999888654 67788888888888888 88888888888765411 001112
Q ss_pred HHHHhcc-cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 284 YNSLMSF-ETNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 284 ~~~ll~~-~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
|..++.. ..+.+.-..+.+.+... |...-+.++-.+-..|-..++++++..+++.+++.. +.|.....-++.+|.
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222222 23444555555555543 333445566677788888889999999999999876 556777777887776
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00074 Score=72.94 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+-.|.....+.|..++|..+++...+.. +-+......+...+.+.+++++|+..+++..... +-+....+.+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 34444455555555555555555555554432 2223344444455555555555555555554431 223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555422 12244455555555555555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.016 Score=61.82 Aligned_cols=219 Identities=19% Similarity=0.210 Sum_probs=139.1
Q ss_pred hchHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 007543 83 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 162 (599)
Q Consensus 83 ~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 162 (599)
...|..-+......-...+...++..+.. .++++.++|..+++-....+ ..+..+...+-.+|...|+.++|..+|+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl-~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL-FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH-HHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555544433333333344444444443 46788999998888776655 3577888899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHH---------HHHHHHH
Q 007543 163 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFK---------EAEEVFM 232 (599)
Q Consensus 163 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~---------~A~~~~~ 232 (599)
+.... -|+......+..+|.+.+.+.+-.+.--+|-+. .+-+.+.+=++++.+...- ..+ -|.+.++
T Consensus 102 ~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 99987 467888888899999988876655544444443 2335555555555554432 222 2666777
Q ss_pred HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHH---HHhcccCCHHHHHHHHHHHHHcC
Q 007543 233 TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA-LMAERGVQQSTVTYN---SLMSFETNYKEVSKIYDQMQRAG 308 (599)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~---~ll~~~~~~~~a~~~~~~m~~~g 308 (599)
.+++.. |---+..-.......+...|.+++|..++. ...+.-..-+...-+ .++...+++.+..++-.++...|
T Consensus 179 ~~l~~~--gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 179 KLLEKK--GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhccC--CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 777643 311122222223445567888999999994 333332222222222 24445789999999999999887
Q ss_pred C
Q 007543 309 L 309 (599)
Q Consensus 309 ~ 309 (599)
.
T Consensus 257 ~ 257 (932)
T KOG2053|consen 257 N 257 (932)
T ss_pred C
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00071 Score=61.64 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK--- 430 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--- 430 (599)
-...|+..|++++|++...... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 3345566666666666655411 2222222233445556666666666666653 255555555555543
Q ss_pred -cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH-HH
Q 007543 431 -VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE-AN 508 (599)
Q Consensus 431 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~ 508 (599)
.+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++...+. ..++.+...++-.....|+..+ ..
T Consensus 185 ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 23566666666666642 45666666666666666666666666666666543 4445555555544444554433 23
Q ss_pred HHHHhc
Q 007543 509 ELLGNF 514 (599)
Q Consensus 509 ~~~~~~ 514 (599)
+.+.++
T Consensus 263 r~l~QL 268 (299)
T KOG3081|consen 263 RNLSQL 268 (299)
T ss_pred HHHHHH
Confidence 444444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0001 Score=62.73 Aligned_cols=104 Identities=10% Similarity=0.000 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
.....+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|..++++..+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344455556666677777777776666544 3356666666677777777777777777666543 33455666666667
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
...|++++|...+++..+ ..|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 96 LALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHcCCHHHHHHHHHHHHH--hccccchH
Confidence 777777777777777766 34544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00053 Score=74.00 Aligned_cols=161 Identities=10% Similarity=0.063 Sum_probs=130.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 344 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
...+...+..|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|+...++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 4667889999999999999999999999999875 454 5677788889999999999999999999876 33777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 502 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 502 (599)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+. ..|....|+.++ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------H
Confidence 89999999999999999999999742 334779999999999999999999999999874 244445555443 3
Q ss_pred cHHHHHHHHHhcc
Q 007543 503 ERNEANELLGNFN 515 (599)
Q Consensus 503 ~~~~A~~~~~~~~ 515 (599)
+...-..+++.+.
T Consensus 231 ~~~~~~~~~~~~~ 243 (694)
T PRK15179 231 DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHcC
Confidence 3444455666654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0015 Score=59.12 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhHhccCCC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHhcccCCHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSP-LKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QS-TVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~~~~ll~~~~~~~~a~~ 299 (599)
.++..+++..++...+.+ ..++. ..|..++-+....|+.+.|...++.+..+-.. +- ......++.+.+++++|.+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 334444444443332333 33333 22334444555566666666666665543210 01 1123334445566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 379 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (599)
+++.+.... +.|.+++---+...-..|+.-+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++.-..
T Consensus 108 ~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~- 184 (289)
T KOG3060|consen 108 YYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ- 184 (289)
T ss_pred HHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-
Confidence 666666654 446666766666666677777777777777665 36677888888888888888888888888776542
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 007543 380 SPDICSYTTMLSAYVNAS---DMEGAEKFFRRLKQD 412 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 412 (599)
+.++..+..+...+.-.| +.+-|.++|.+..+.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 234444444444433333 455666777766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0025 Score=58.16 Aligned_cols=153 Identities=12% Similarity=0.063 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-- 395 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 395 (599)
.-...|++.|++++|++...... ..+ ....=+..+.+..+++-|.+.+++|..- .+..|.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la 183 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLA 183 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHh
Confidence 33445666667777766655421 112 2222233445556666676666666653 245566655555543
Q ss_pred --cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH-
Q 007543 396 --ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA- 472 (599)
Q Consensus 396 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A- 472 (599)
.+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++...... .-++.+...++-+-...|...++
T Consensus 184 ~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 24566677777776653 35666666666666667777777777777766543 23455555555444444544332
Q ss_pred HHHHHHHHh
Q 007543 473 VVWYKEMES 481 (599)
Q Consensus 473 ~~~~~~m~~ 481 (599)
.+.+.++..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 334444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00032 Score=69.35 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=101.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHH
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDME 400 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 400 (599)
.+...|++++|+..++.++..- +.|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3456677788888888877653 445556666677778888888888888887765 444 555666677888888888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+|..++++..... +-|+..|..|..+|...|+..++.....++ +...|+++.|+..+....
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHH
Confidence 8888888777654 457778888888888888777766554443 556777888887777776
Q ss_pred hCCCCCCHHHH
Q 007543 481 SCGFPPDQKAK 491 (599)
Q Consensus 481 ~~g~~p~~~~~ 491 (599)
+. ..++..+|
T Consensus 453 ~~-~~~~~~~~ 462 (484)
T COG4783 453 QQ-VKLGFPDW 462 (484)
T ss_pred Hh-ccCCcHHH
Confidence 54 23444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=72.66 Aligned_cols=125 Identities=12% Similarity=0.166 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
...|+..+...++++.|..+|+++.+.. |+ ....|++.+...++-.+|++++++..+..+ .+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 3478888888999999999999999873 45 445688889899999999999999987643 367777777888999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.++.+.|+++.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999998642 55667999999999999999999999988763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00025 Score=60.27 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=73.3
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+......+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|..++++..+.++ .+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHH
Confidence 34455667777888888888888888877764 33677788888888888888888888888776543 35666667777
Q ss_pred HHHHcCCHHHHHHHHHHhHhc
Q 007543 217 LFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.+...|++++|.+.|+..++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888877753
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0073 Score=54.85 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG---MVDQARTVFKCMRRD 377 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 377 (599)
..|...|.-+...|...|++++|.-.+++++-.. +.++..+..+.+.+.-.| ++..|.++|.+..+.
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4577788888888888888888888888877653 445555555655544333 566677777777664
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=1e-05 Score=50.30 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=49.19 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 206 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 206 (599)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=48.67 Aligned_cols=33 Identities=39% Similarity=0.776 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 452 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (599)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00065 Score=67.86 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 464 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (599)
....|+..+...++++.|.++|+++.+.. |+. ...++..+...++-.+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34455666667788899999999888764 553 3457777777888888999998888642 345667777778888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 465 KNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+.++++.|+++.+++.+ ..|+. .+|..|..+|...|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999988 56665 689999999999999999999998864
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=57.08 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CSYTTMLSAYVNASDME 400 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 400 (599)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|.. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555442 222 112223334455555555555555555554311111 12223344455555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
+|+..++..... ......+....+.|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555443222 12233344455555555555555555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=56.71 Aligned_cols=126 Identities=20% Similarity=0.299 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA--LTYQII 214 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~l 214 (599)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|++.......|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344555555 3777888888888887763 223 223344557777888888888888888876533322 233445
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
...+...|++++|+..++.... . ......+....+.|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~---~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD---E--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC---c--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6777788888888888866421 1 234456667788888888888888888653
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.6e-05 Score=47.43 Aligned_cols=32 Identities=31% Similarity=0.760 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 451 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 451 (599)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0009 Score=67.18 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+......+++.+....+++.+..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3344444444444444444444444444332 11111122334455555555555555555444444555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555444443333334444433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00051 Score=68.88 Aligned_cols=124 Identities=10% Similarity=0.126 Sum_probs=104.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 420 (599)
+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667778888888888888899999999988775 2223345667999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (599)
++.|++.+.+.|++..|.++...|..++...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999777777777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.074 Score=53.74 Aligned_cols=210 Identities=13% Similarity=0.183 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA---RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 370 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (599)
.+++.++++.....-...+..+|..+...--.. +..+.....++++...-..--..+|..+++.-.+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345556666555433233444444433221111 13555666666665543222334677788888888889999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 371 FKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 371 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
|.+..+.+..+ ++...++++.-|| .++.+-|.++|+-=.+.- .-++.--...++-+.+.++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987777 7777888887666 578899999999755431 23444456778888999999999999999998877
Q ss_pred CcCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHhhcCcHHH
Q 007543 450 KPNQ--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP----PDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 450 ~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~ 506 (599)
.|+. .+|..+++-=..-|+...+.++-+++... ++ +.-.+-..+++-|.-.+.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-FPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cchhhcCCCChHHHHHHHHhhcccccc
Confidence 7774 59999999999999999999999888652 22 222334455566655554443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=53.63 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIIL 215 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll 215 (599)
++..++..+.+.|++++|.+.|+.+...... .....+..+...+.+.|++++|...|+.+....+.. ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666666667777777777666654211 013355556666666666666776666665533221 133455555
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 007543 216 KLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.++.+.|+.++|.+.++++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 566666666666666666654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.4e-05 Score=45.87 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00094 Score=51.96 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHh
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 470 (599)
..+...|++++|...++++.+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 33444444444444444444332 1122334444444444444444444444444321 112234444444444444444
Q ss_pred HHHHHHHHHH
Q 007543 471 SAVVWYKEME 480 (599)
Q Consensus 471 ~A~~~~~~m~ 480 (599)
+|...+.+..
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=51.58 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567788889999999999999998653 3345678888999999999999999999998753 444467888888999
Q ss_pred hcCcHHHHHHHHHhccCCC
Q 007543 500 TADERNEANELLGNFNHPN 518 (599)
Q Consensus 500 ~~g~~~~A~~~~~~~~~~~ 518 (599)
..|++++|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999998875443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.16 Score=54.52 Aligned_cols=218 Identities=15% Similarity=0.166 Sum_probs=114.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA--YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.+++.+|.+-.+++.++ -|+.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|.+.++.++|.
T Consensus 22 ~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 34455555555555444 23322 2222222 34556666666555555444333 5556666666666666666666
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc----cC---------CHH
Q 007543 229 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF----ET---------NYK 295 (599)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----~~---------~~~ 295 (599)
.+|++.... -|+......+..+|.+-+++.+-.+.--++-+ ..+.+...+-++++. .. -..
T Consensus 98 ~~Ye~~~~~-----~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 98 HLYERANQK-----YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHhh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 666665532 33444444555555555554432222222211 111223333333321 00 112
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAG-LQPDVVSYALLINAYGKARREEEALAVFE-EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 373 (599)
Q Consensus 296 ~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (599)
-|.+.++.+.+.+ .--+..-...-...+...|++++|..++. ...+.-..-+...-+.-++.+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3455566665543 11122223333445567888999999994 444443344555566778889999999999999999
Q ss_pred HHhCC
Q 007543 374 MRRDR 378 (599)
Q Consensus 374 m~~~~ 378 (599)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0012 Score=52.06 Aligned_cols=71 Identities=11% Similarity=0.265 Sum_probs=32.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007543 358 FAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNAS--------DMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (599)
+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444445555544444 444445554444443321 1223344444444444445555554444443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0021 Score=54.54 Aligned_cols=94 Identities=9% Similarity=0.025 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
...+...+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|++.|.......+. |+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence 345666777788888888888887776533 6677788888888888888888888888777643 77777778888888
Q ss_pred cCCHHHHHHHHHHhHh
Q 007543 221 ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (599)
.|+.+.|.+-|+..+.
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888887764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0047 Score=54.95 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=67.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII 214 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 214 (599)
....+..+...|...|++++|...|++..+....+. ...|..+...+.+.|++++|+..+.+..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888888999999999999998886543222 467888899999999999999999998875433 55666677
Q ss_pred HHHHHHcCCHHH
Q 007543 215 LKLFVEANKFKE 226 (599)
Q Consensus 215 l~~~~~~g~~~~ 226 (599)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 777777776433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0011 Score=61.60 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 471 (599)
..+.+++++|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+..+.. .|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 345566666666666666654 235566666666666666666666666665543 333 3366666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
|++.|++.++ +.|+..+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 6666666666 5666655543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=51.64 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
.++..+...+.+.|++++|.+.|.++....+. .....+..+..++.+.|+++.|.+.|+.+.... .+.+....++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHH
Confidence 45677888889999999999999999875432 124566778889999999999999999998642 111223456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+...+.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8889999999999999999998763
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0025 Score=63.87 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=55.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+...|++++|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666665543 2245556666666666666666666666666432 2234456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~ 491 (599)
|+..|++.++ +.|+....
T Consensus 89 A~~~~~~al~--l~P~~~~~ 106 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRF 106 (356)
T ss_pred HHHHHHHHHH--hCCCCHHH
Confidence 6666666665 34444333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=44.09 Aligned_cols=29 Identities=48% Similarity=0.716 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0026 Score=50.15 Aligned_cols=81 Identities=21% Similarity=0.467 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCcCHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVN--------NLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
|-...|..|...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334455566666888888888888888888 788888888888877643 23445667777777777777777
Q ss_pred HHHHHHHHHh
Q 007543 456 FTTIMDAYGK 465 (599)
Q Consensus 456 ~~~li~~~~~ 465 (599)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0025 Score=56.72 Aligned_cols=105 Identities=17% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 007543 345 RPTHKAYNILLDAFAI-----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 419 (599)
..+..+|..+++.|.+ .|.++=....++.|.+.|+..|..+|+.|++.+=+ |.+ .|...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccH
Confidence 3455566666666553 35566666666777777777777777777766543 221 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (599)
.. ++..-| -.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 108 fQ-~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQ-AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HH-HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 111111 12346678888888888888888888888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.012 Score=52.41 Aligned_cols=96 Identities=10% Similarity=0.083 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++.. +.+...+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 109 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN----PKQPSAL 109 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHH
Confidence 455788888899999999999999999987654432 4578888899999999999999999998642 4456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q 007543 250 HMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~ 271 (599)
..+...|...|+...+..-++.
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHH
Confidence 7788888888876665544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0023 Score=56.66 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=59.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...+..+...+...|++++|...|++.......+ ...+|..+...|...|++++|+..+++.....+ ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3455667777777888888888888876553222 234677788888888888888888888776432 2344455555
Q ss_pred HHHH-------HcCCHHHHHHHH
Q 007543 216 KLFV-------EANKFKEAEEVF 231 (599)
Q Consensus 216 ~~~~-------~~g~~~~A~~~~ 231 (599)
..+. ..|+++.|...+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHH
Confidence 5555 555555444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0034 Score=60.64 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR-GGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
.+|..+++..-+.+..+.|+++|.+..+.+. -+...|-.....-.+ .++.+.|..+|+...+. ...+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3577788888888889999999999886532 133444444444233 56677799999988776 45577788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPD---QKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+.+.|+.+.|..+|++.+.. +.++ ...|...++.=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~----l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS----LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT----SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999998742 2222 258888999889999999999988888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0003 Score=54.09 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYA-PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
.|+++.|+.+|+++.+.... ++...|..+..+|.+.|++++|++++++ .+.+.. +....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35555566666655554221 1233344455556666666666665555 221111 22222333455555555555555
Q ss_pred HHHH
Q 007543 230 VFMT 233 (599)
Q Consensus 230 ~~~~ 233 (599)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0052 Score=59.31 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|......-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 346666666666666666777776666432 2233344443333222 34455566666666553 34455556666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666544 12111 2555555555555666666666555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00051 Score=52.78 Aligned_cols=81 Identities=21% Similarity=0.376 Sum_probs=61.0
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 186 GGRYKNAEAIFRRMQSSGPR-PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
.|++++|+.+|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----CCCHHHHHHHHHHHHHhCCHHH
Confidence 68899999999999886553 2455556688999999999999999987 3221 2233455566889999999999
Q ss_pred HHHHHHH
Q 007543 265 ARKLFAL 271 (599)
Q Consensus 265 A~~~~~~ 271 (599)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.048 Score=52.87 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
..+...+.+.|++++|..+|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344445555555555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.07 Score=51.71 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-----PNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...|++..|.+.+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555566666666666666665542111 1111 222223344455666666666666543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0099 Score=59.58 Aligned_cols=91 Identities=12% Similarity=-0.005 Sum_probs=63.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
...+...|++++|++.|++..+... .+...|..+..+|.+.|++++|+..+++.+...+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 4455566777777777777776643 25667777777777777777777777777765432 556666777777777777
Q ss_pred HHHHHHHHHhHhc
Q 007543 225 KEAEEVFMTLLDE 237 (599)
Q Consensus 225 ~~A~~~~~~~~~~ 237 (599)
++|...|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0054 Score=54.69 Aligned_cols=105 Identities=14% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 007543 380 SPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 454 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (599)
..+..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~---------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE---------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH----------
Confidence 34666777777766543 5666666677777777777777777777777654 3321 11112211
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
..-| -.+-+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus 112 -----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12345699999999999999999999999999987664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.007 Score=51.48 Aligned_cols=99 Identities=8% Similarity=-0.058 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+......+...+...|++++|..+|+.+....+. +..-|-.|.-++-..|++++|+..|......+ +.|...+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 4445566777788999999999999999886544 56667788888999999999999999998643 567788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+..++.+.|+.+.|++.|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999988764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.17 Score=47.56 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3556677777777777777777664 112233355566677777777777776665443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.39 Score=50.69 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=47.3
Q ss_pred HHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 109 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 109 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
+.++...+.+..|.++-.|+.... ..+...|.....-+.+..+ -+-+..+=+++... . -.-.+|..+.+-...
T Consensus 444 i~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 444 IDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQ 519 (829)
T ss_pred hHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHh
Confidence 345666677778888877775432 1223555555666665532 22222222233221 1 244567777776677
Q ss_pred cCCHHHHHHHHHH
Q 007543 186 GGRYKNAEAIFRR 198 (599)
Q Consensus 186 ~g~~~~A~~l~~~ 198 (599)
.|+++-|..+++.
T Consensus 520 ~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 520 EGRFELARKLLEL 532 (829)
T ss_pred cCcHHHHHHHHhc
Confidence 7888777776543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.01 Score=52.48 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 007543 154 FNKAEKVLSFMN-KKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEV 230 (599)
Q Consensus 154 ~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~~~ 230 (599)
+..+...+..+. ..+-......|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444443 22222235678888889999999999999999998754333 235788888999999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHHH
Q 007543 231 FMTLLDEEKSPLKPDQKMFHMMIYMYK-------KAGGYEKARKLFALM 272 (599)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~~~A~~~~~~m 272 (599)
++..+... +.....++.+...+. ..|+++.|+..+++.
T Consensus 95 ~~~Al~~~----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99998642 344566777777777 677777666665544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.13 Score=48.33 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 395 (599)
....+.+.|++++|.+.|+++...- +-+.... -.++.+|.+.+++++|...|++..+........-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4445567788888888888887753 2222222 34566778888888888888887765322122233333333321
Q ss_pred --cC---------------C---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 396 --AS---------------D---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 396 --~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
.+ + ..+|+..|++++ .-|-...-..+|.+.+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 123333444433 3333333345555544444321 0111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 124556688999999999999999863 22223355667778899999999998887765
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.033 Score=58.50 Aligned_cols=142 Identities=11% Similarity=0.064 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHh
Q 007543 345 RPTHKAYNILLDAFAIS--G---MVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVNA--------SDMEGAEKFFRRLK 410 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~~m~ 410 (599)
+.+...|...+.+.... + ....|..+|++..+. .|+- ..|..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 55666666666654322 2 255677777777654 3443 3333332222211 12233344444333
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 411 QD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 411 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.. ....+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|...+++... +.|...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence 22 12335566777766666678888888888888765 36777788888888888888888888888877 556655
Q ss_pred HHH
Q 007543 490 AKN 492 (599)
Q Consensus 490 ~~~ 492 (599)
+|.
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=50.27 Aligned_cols=55 Identities=18% Similarity=0.094 Sum_probs=33.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+.+.+..++..|+..+....+.++. ++.-|..-...+..-|++++|+--.+.-++
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r 111 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVR 111 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhhee
Confidence 3445556666777777766666432 455666666666667777777665555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.029 Score=58.88 Aligned_cols=139 Identities=8% Similarity=-0.013 Sum_probs=100.9
Q ss_pred CCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHHHHHH
Q 007543 378 RCSPDICSYTTMLSAYVNA--S---DMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVN--------NLEKMMEIYDK 443 (599)
Q Consensus 378 ~~~p~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~ 443 (599)
..+.+...|...+.+.... + +...|..+|++..+.. |+ ...|..+..++.... ++..+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4567889999998875443 2 3779999999999874 44 455665555443321 23344444444
Q ss_pred HHHC-CCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 444 MRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 444 m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
.... ....+...|..+.-.....|++++|...++++.+ +.|+...|..+...+...|+.++|...+++....++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4332 1234567888887777788999999999999999 5578888999999999999999999999997655554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.037 Score=45.36 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=58.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILKLF 218 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~ 218 (599)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.|...|++++|+.+|++....-+.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344556667778888888888777765533 3355566677777788888888887776643220 112222333456
Q ss_pred HHcCCHHHHHHHHHHhH
Q 007543 219 VEANKFKEAEEVFMTLL 235 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~ 235 (599)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 67778887777776654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.39 Score=46.76 Aligned_cols=289 Identities=15% Similarity=0.182 Sum_probs=168.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHhHhccCCCCCCCHHH--HHHHHHHHHHcCC
Q 007543 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF--VEANKFKEAEEVFMTLLDEEKSPLKPDQKM--FHMMIYMYKKAGG 261 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 261 (599)
.|+-..|.++-.+-.+. +..|...+..++.+- .-.|+++.|.+-|+.|++ .|.... ...|.-.--+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhccc
Confidence 45566666655544322 333444455555443 235777777777777763 222111 1112222234455
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
.+.|..+-+..-.. - +.-...+..++...|..|+++.|+++.+.-..
T Consensus 170 reaAr~yAe~Aa~~--------------------------------A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 170 REAARHYAERAAEK--------------------------------A-PQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHHHhh--------------------------------c-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 55555544433321 1 11235567778888888888888888887654
Q ss_pred CC-CCCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 007543 342 AG-VRPTHK--AYNILLDAFAI---SGMVDQARTVFKCMRRDRCSPDICSYT-TMLSAYVNASDMEGAEKFFRRLKQDGF 414 (599)
Q Consensus 342 ~g-~~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~ 414 (599)
.. +.++.. .-..|+.+-.. .-+...|...-.+..+ ..||.+--. .-..++.+.|+..++-.+++.+-+...
T Consensus 217 ~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 217 AKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 32 234432 12223322211 2245555555444443 456654332 334588999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKN 492 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 492 (599)
.|+ .. ++..+.+.|+. +..-+++..+ ..++|| ...--.+..+-...|++..|..--+.... ..|....|.
T Consensus 295 HP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~l 366 (531)
T COG3898 295 HPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYL 366 (531)
T ss_pred ChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHH
Confidence 444 32 22334455543 3333333321 123455 55777888888899999998888777776 688888888
Q ss_pred HHHHHHh-hcCcHHHHHHHHHhccCCCCCCCcc
Q 007543 493 ILLSLAK-TADERNEANELLGNFNHPNNEPGIN 524 (599)
Q Consensus 493 ~ll~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~ 524 (599)
.+.+.-. ..|+-.+++..+-+..+...+|...
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 8887654 4599999999999877666666543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.6 Score=48.86 Aligned_cols=78 Identities=15% Similarity=0.243 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
+|+.+...++....+++|.+.|..-. + ....+.++....++++-+.+-+.+ +.|....-.+.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~------~---~e~~~ecly~le~f~~LE~la~~L--------pe~s~llp~~a~ 860 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG------D---TENQIECLYRLELFGELEVLARTL--------PEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc------c---hHhHHHHHHHHHhhhhHHHHHHhc--------CcccchHHHHHH
Confidence 45555555555555555555554321 1 112333444444444444433333 334445555666
Q ss_pred HHHHcCCHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLF 269 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~ 269 (599)
++.+.|.-++|.+.|
T Consensus 861 mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 861 MFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHhhchHHHHHHHH
Confidence 666666666666555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0033 Score=45.37 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+...+.+.|++++|.+.|+++.+.. +-+...|..+..++.+.|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456666777777777777777664 225666777777777777777777777776653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.048 Score=51.09 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=57.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 225 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 225 (599)
+-+.+.+++.+|+..|.+.++.... |.+-|..-..+|++.|.++.|++-.+..+...+. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3445566777777777777766422 5666666677777777777777766666553322 3346666777777777777
Q ss_pred HHHHHHHHhHh
Q 007543 226 EAEEVFMTLLD 236 (599)
Q Consensus 226 ~A~~~~~~~~~ 236 (599)
+|.+.|++.++
T Consensus 167 ~A~~aykKaLe 177 (304)
T KOG0553|consen 167 EAIEAYKKALE 177 (304)
T ss_pred HHHHHHHhhhc
Confidence 77777777664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0036 Score=45.66 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=27.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+.|++++|.++|+++..... -+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555554422 2455555555555555555555555555554
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.032 Score=54.25 Aligned_cols=131 Identities=14% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEML----DAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRR----DRC-SPDIC 384 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 384 (599)
.|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+.+++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666677777766554422 1121 11223566666777777777777776665322 111 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQ----D-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
+..+|...|.-..++++|+.++.+-.. . ...-....|-+|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455566666666677777776665321 0 112244566677777777777777776655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0055 Score=44.66 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.|++++|+++|+++.... +.+...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555443 334444455555555555555555555555443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0046 Score=45.25 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHh
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMES 481 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 481 (599)
..+|..+...+...|++++|+..|++.++.+ +-+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555432 112335555555555555 45555555555443
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.12 Score=50.47 Aligned_cols=271 Identities=13% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
..+.+..++.+|+..+...++..+. +..-|..-...+.-.+++++|.--.+.-++.. .++ .....-.-+++...+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~---~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGF---SKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCc---cccccchhhhhhhhH
Confidence 3455677888888888888886544 45555555556666777777776655554321 111 123333444444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALL-INAYGKARREEEALAVFEE 338 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 338 (599)
+..+|.+.++.-. .+ ....++..++....... +|...++..+ ..++.-.|+.++|...-..
T Consensus 132 ~~i~A~~~~~~~~---------~~--------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------AY--------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHHHHhhhhh---------hh--------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5555555554111 00 00111111111111111 1223333333 2334455666666666555
Q ss_pred HHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhcCCHHHHH
Q 007543 339 MLDAGVRPTHKAYNILLD--AFAISGMVDQARTVFKCMRRDRCSPDICSY-------------TTMLSAYVNASDMEGAE 403 (599)
Q Consensus 339 m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~g~~~~A~ 403 (599)
.++.. . ...+...+. ++--.++.+.|...|++..+. .|+...- ..=..-..+.|++..|.
T Consensus 195 ilkld-~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD-A--TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc-c--chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 55432 1 112222222 233455666777777666554 2332211 11122345789999999
Q ss_pred HHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-H--HHHHHHHHHhcCCHhHHHHHHH
Q 007543 404 KFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-I--FTTIMDAYGKNKDFDSAVVWYK 477 (599)
Q Consensus 404 ~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~--~~~li~~~~~~g~~~~A~~~~~ 477 (599)
+.|.+.+.. +.+|+...|........+.|+.++|+.--++..+. |.. + |-.-..++...++|++|++-++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 45677788888888888999999999988887743 332 2 2222344556788899999998
Q ss_pred HHHhC
Q 007543 478 EMESC 482 (599)
Q Consensus 478 ~m~~~ 482 (599)
+..+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 88763
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0053 Score=44.28 Aligned_cols=56 Identities=7% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666655432 11244555555555666666666666665554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.088 Score=54.18 Aligned_cols=38 Identities=11% Similarity=0.340 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 303 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~ 303 (599)
..-+++++++|-.|+.......+...|++.+|-++|.+
T Consensus 620 i~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33445566666666666666666666666666665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.016 Score=56.25 Aligned_cols=273 Identities=13% Similarity=0.082 Sum_probs=153.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhH--hccCCCCCCCHHHHHHHHH
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLL--DEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~li~ 254 (599)
.-+|+.|+......+|+..++.|.+ |.. .|..|.++|.-.+++++|++++..=+ .+.-..-.-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578888888888888888887754 433 45556666777777888877764432 1100000112233344555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 007543 255 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR------ 328 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------ 328 (599)
.+.-.|.+++|+-.-.+-. +-+.++=+.+.+ ...+-.+...|-..|+
T Consensus 104 tlKv~G~fdeA~~cc~rhL---------------------d~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~ 156 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHL---------------------DFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEA 156 (639)
T ss_pred hhhhhcccchHHHHHHHHh---------------------HHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCC
Confidence 5556666666654322211 111111111110 0111122222222211
Q ss_pred --------------HHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCC-CCHH
Q 007543 329 --------------EEEALAVFEEML----DAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDRCS-PDIC 384 (599)
Q Consensus 329 --------------~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~ 384 (599)
++.|.++|.+=+ +.|- -.--..|..|.+.|.-.|+++.|+...+.-. +.|-. ....
T Consensus 157 pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRR 236 (639)
T KOG1130|consen 157 PEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERR 236 (639)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 123333333211 1110 0011246666677777889999987665422 22211 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcCHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLK----QDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPNQT 454 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~ 454 (599)
.+..+..++.-.|+++.|.+.|+... +.| -.....+.-+|.++|.-...+++|+.++.+-.. . ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 67778888999999999999988753 222 123445666788888888899999988876432 1 1122355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.+.+|..+|...|..++|+.+.+...+
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 788899999999999999888776643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0053 Score=44.89 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=32.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQS 201 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 201 (599)
..|..+...+.+.|++++|+..|++..+... .+...|..+..+|...| ++++|++.|++.++
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555431 14445555555555555 45555555555443
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.44 Score=43.56 Aligned_cols=47 Identities=21% Similarity=0.312 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 007543 319 LINAYGKARREEEALAVFEEMLDAGVRPTHK----AYNILLDAFAISGMVDQA 367 (599)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A 367 (599)
+...|.+.|.+..|..-++.+++. -|++. ..-.++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 556778888888888888887765 33332 345666777777766644
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.65 Score=45.50 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 355 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (599)
|.-+...|+...|.++-.+.. -|+..-|..-+.+++..++|++-.++-.. . -.+.-|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHCCCH
Confidence 333344444444444433332 24444455555555555555444443221 0 1223344445555555555
Q ss_pred HHHHHHHHH
Q 007543 435 EKMMEIYDK 443 (599)
Q Consensus 435 ~~A~~~~~~ 443 (599)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.46 Score=43.74 Aligned_cols=142 Identities=8% Similarity=-0.013 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-----
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL----- 424 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 424 (599)
+.+.++..+...|.+.-....+++.++...+.++.....+.+.-.+.|+.+.|...|++..+..-+.|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344555556666667777777777776655566677777777777777777777777766543323333333332
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 494 (599)
...|.-+.++..|...+.+....+ ..|....|.-.-++.-.|+..+|++.++.|.+ ..|.+.+.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 233445567777777777776543 22333334333344456778888888888877 56666555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.74 Score=45.77 Aligned_cols=378 Identities=13% Similarity=0.209 Sum_probs=196.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++-+.+.+. |.|...|..|+.-|...|..++.++++++|..- ++--..+|..-|++-....++.....+|.+....
T Consensus 30 rLRerIkdN---PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDN---PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcC---chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 555555443 467788999999999999999999999999864 2334568999999888889999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHH---H------cCCHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKF------KEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYK---K------AGGYEKAR 266 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~---~------~g~~~~A~ 266 (599)
... ...|...+.--.+.+.. -...+.|+-.+. ..++.|- ...|+..+..+- . +.+++...
T Consensus 106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~--~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLG--CAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHh--cccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 544 55566666544443321 122234444443 3445443 344555544332 2 33455666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhcc------------cC----CHHHHHHHHHHHHH--cCCCC----CHHH---------
Q 007543 267 KLFALMAERGVQQSTVTYNSLMSF------------ET----NYKEVSKIYDQMQR--AGLQP----DVVS--------- 315 (599)
Q Consensus 267 ~~~~~m~~~g~~~~~~~~~~ll~~------------~~----~~~~a~~~~~~m~~--~g~~~----~~~~--------- 315 (599)
..|.+|....+..-...|+-.-.. .| -+-.|.+.++++.. .|... +..+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 777777764322111222211100 01 12233333333321 11100 0000
Q ss_pred -----------------------------HHHHHH--------------HHHhcCCHHHHHHHHHHHHHCCCCCC-----
Q 007543 316 -----------------------------YALLIN--------------AYGKARREEEALAVFEEMLDAGVRPT----- 347 (599)
Q Consensus 316 -----------------------------~~~li~--------------~~~~~g~~~~A~~~~~~m~~~g~~~~----- 347 (599)
|+..+. -+...++-+.|+.....-... .|+
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~l 339 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFL 339 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeH
Confidence 111110 112223334444433322111 111
Q ss_pred ----------HH---HHHHHHHHHHH---cCCHHHHHHH------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 348 ----------HK---AYNILLDAFAI---SGMVDQARTV------FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 348 ----------~~---~~~~li~~~~~---~g~~~~A~~~------~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
.. +|..++..+.+ .++-+.+... ..+..-.....-...|...+.+-.+..-.+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 11 12233333221 1222222111 11111111122345666677776777777777777
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 406 FRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF-TTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 406 ~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
|-++.+.+ +.+++..+++++..++ .|+..-|.++|+.=..+ .||...| ...+.-+.+.++-+.|..+|+..++.
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r- 495 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER- 495 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-
Confidence 77777666 4566777777776655 46666777777654432 3444433 44555666667777777777755432
Q ss_pred CCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 484 FPPD--QKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 484 ~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+..+ ...|..+++.-..-|+...+..+-+.+
T Consensus 496 ~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 496 LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 2222 345666666666666665555554443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.071 Score=43.70 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~ 463 (599)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666665554432 234445556666666666666666665543 122 11222233345
Q ss_pred HhcCCHhHHHHHHHHHH
Q 007543 464 GKNKDFDSAVVWYKEME 480 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~ 480 (599)
...|+.++|+.++-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 56666666666665443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.37 Score=41.96 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILKLFVE 220 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~ 220 (599)
..|.+.+.+.|+..+|+..|++...--+..|....-.+.++....+++..|...++++-+..+. .++.+...+.+.+..
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa 172 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA 172 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence 3444445555555555555544443333334444444444444445555555444444433210 011122333444444
Q ss_pred cCCHHHHHHHHHHhH
Q 007543 221 ANKFKEAEEVFMTLL 235 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~ 235 (599)
.|+..+|+.-|+..+
T Consensus 173 ~g~~a~Aesafe~a~ 187 (251)
T COG4700 173 QGKYADAESAFEVAI 187 (251)
T ss_pred cCCchhHHHHHHHHH
Confidence 444444444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.39 Score=41.83 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHH
Q 007543 345 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---FVPNVITY 421 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 421 (599)
.|++..--.|..+..+.|+..+|...|++...--...|....-.+..+....+++..|...++++.+.+ -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 566666667777777888888888888777664445566677777777777788888887777776542 23333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
-.+...|...|+..+|+..|+..... -|+...-.-....+.+.|+.++|..-+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 34567777778888888888877754 455544444444566777666655444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.1 Score=47.79 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML---- 390 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---- 390 (599)
.-+.++..+.-.|.+.-....+.+.++...+.++.....|...-.+.|+.+.|...|+...+..-..|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456667777778888888999999887767788888899999999999999999999776653344444444443
Q ss_pred -HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 007543 391 -SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 460 (599)
Q Consensus 391 -~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (599)
..|.-.+++..|...+.++...+ ..|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34566778888888888887665 336666665555555679999999999999865 46555544433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.11 Score=48.99 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHH
Q 007543 380 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIF 456 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 456 (599)
+-|...|..|..+|...|+.+.|..-|.+..+.. .+|...+..+..++.... ...++..+|+++...+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4467777777777888888888877777776653 346666666666655433 4566777787777553 3345566
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
.-|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66667777788888888888888774
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.52 Score=46.72 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=106.7
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCC--CCHHhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWD--FNEMDFLMLITAYGK---QGDFNKAEKVLSFMNKKGYAPSV 173 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 173 (599)
.+.++.+...+..++...+|+...++.+-+......+ .+...-....-++-+ .|+.++|++++..+....-.++.
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 4566777778888888889998888888887664221 112222244455556 78899999999886665566788
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-H---HHHHHH---HH-hHh
Q 007543 174 VSHTALMEAYGR---------GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF-K---EAEEVF---MT-LLD 236 (599)
Q Consensus 174 ~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~---~A~~~~---~~-~~~ 236 (599)
.+|..+.+.|-. ....++|+..|.+.-+. .||.++=..+...+.-.|.. + +..++- .. +.+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888877633 12367788888776553 34443322233333333321 1 222222 11 112
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 237 EEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 237 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
.+...-..|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222223455666777788888888888888888887765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.21 Score=47.18 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=84.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHh
Q 007543 158 EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN---KFKEAEEVFMTL 234 (599)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~A~~~~~~~ 234 (599)
..-++.-...+ +-|...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++.... ...++..+|+++
T Consensus 142 ~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 142 IARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 33344334443 3488899999999999999999999999988753 235666666666554332 456888999999
Q ss_pred HhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 235 LDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
+..+ +.|+.+...|...+...|++.+|...++.|.+..
T Consensus 220 l~~D----~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 220 LALD----PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HhcC----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8654 5677777788888999999999999999998763
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.094 Score=49.82 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
|...+..+.+.|++++|+..|+.+.+.-+... ...+-.+..+|...|++++|...|+.+++... +-+.....+-.+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg 224 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHH
Confidence 33333333445566666666666655432211 23444555556666666666666666654211 1111223333444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 007543 254 YMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+...|+.++|..+|+.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5555566666666666655543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.068 Score=50.76 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=78.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTY 211 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~ 211 (599)
...|..-+..+.+.|++++|...|+.+.+.- |+ ..++..+...|...|++++|...|..+.+.-+. .....+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 3457777777777899999999999999873 33 358889999999999999999999999875322 134455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+...+...|+.+.|.++|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56677788999999999999999864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.8 Score=45.43 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
..|..|..--...|..+.|++.--.+.. ..+-|....|+.|.-+-|....+...-+.|-++...
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence 3444444455566777777775544443 235567777777766666666665555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.021 Score=42.17 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
..|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|.+.|++..+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4566777777777777777776432 566677777777777777777777777776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.38 Score=43.99 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDME 400 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~ 400 (599)
+...|.+.|.+..|..-++.+++. -|++ .....++.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChH
Confidence 345566666666666666666554 2222 23344445555555554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.038 Score=40.81 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 427 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666655442 22344555555556666666666666666655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.7 Score=43.24 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAI---SGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
.++-+|....+++..+++.+.+...- +......--....++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777778888888888876531 11122222334445555 7788888888887655555677777777666
Q ss_pred HHHh---------cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HHHCCC---Cc
Q 007543 392 AYVN---------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN----LEKMMEIY---DK-MRVNGI---KP 451 (599)
Q Consensus 392 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~A~~~~---~~-m~~~~~---~p 451 (599)
.|-. ....++|...|.+.-+. .||..+--.++..+.-.|. -.+..++- .. +.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5432 12367777777766554 3444332222222223332 11222222 22 112332 23
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 007543 452 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
|.-.+.+++.++.-.|+++.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4446678888888999999999999999874
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=42.75 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
|..++..++.++++.|+.+....+++..- |+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34556666666666666666666665432 11111000 0000 0112356788888888888
Q ss_pred HHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 007543 462 AYGKNKDFDSAVVWYKEMES-CGFPPDQKAKNILLSLA 498 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~ 498 (599)
+|+.+|++..|+++.+...+ .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 88888888888888888754 56777788888887643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.055 Score=46.49 Aligned_cols=70 Identities=27% Similarity=0.307 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR-----DRCSPDICS 385 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 385 (599)
....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45667777888899999999999888876 66788889999999999999999988887644 377776655
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.036 Score=41.60 Aligned_cols=61 Identities=18% Similarity=0.453 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555421 10 111 2355556666666666666666665553
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.082 Score=45.42 Aligned_cols=70 Identities=11% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHH
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAK 491 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~ 491 (599)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445555666777777777777776542 3345577777777777777777777776663 34666666553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.89 E-value=2 Score=42.20 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
.+.+..+.-+...|+...|.++-++.. .|+..-|-..+.+++..++|++-.++... . -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence 355666777888999999998877664 57999999999999999999987776432 1 2347788999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
.+.|+..+|..++.++ ++ .--+..|.+.|++.+|.+.--+
T Consensus 248 ~~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999988772 22 2234455666666666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.35 Score=41.59 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
...-+-..|++++|..+|.-+.-.++. +..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 344445667777777777776665433 5556666667777777777777777666544322 44444455666777777
Q ss_pred HHHHHHHHHHhHh
Q 007543 224 FKEAEEVFMTLLD 236 (599)
Q Consensus 224 ~~~A~~~~~~~~~ 236 (599)
.+.|+..|...++
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.24 Score=41.07 Aligned_cols=100 Identities=9% Similarity=0.091 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 426 (599)
|..++..++.++++.|+++....+.+..= |+..+... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 46788999999999999999888886543 33322100 0000 1134567899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHHhc
Q 007543 427 GYAKVNNLEKMMEIYDKMR-VNGIKPNQTIFTTIMDAYGKN 466 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~ 466 (599)
+|+..|++..|+++.+... ..+++.+..+|..|+.-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999887 457777888898888755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=4 Score=43.52 Aligned_cols=335 Identities=13% Similarity=0.107 Sum_probs=172.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
.+++-+...+.+..|.++-.-+...-.. ....|.....-+.+..+ -+++++-.++=..... ....+|..+.+-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 4677777888888888887766542111 14555566666666532 2233333322222212 344567777777778
Q ss_pred cCCHHHHHHHHHHhHhcc-CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 221 ANKFKEAEEVFMTLLDEE-KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
.|+.+.|..+++.=.... ...+-.+..-+...+.-..+.|+.+-...++-.+... -+. ..+.....+.-.|..
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~---s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR---SSLFMTLRNQPLALS 593 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH---HHHHHHHHhchhhhH
Confidence 888888887765321100 0000001112333344444555555555544444332 011 111111223334444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHH----HCCCCCCHHHHHHHHHHHHHcCCH----------
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF-EEML----DAGVRPTHKAYNILLDAFAISGMV---------- 364 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~~li~~~~~~g~~---------- 364 (599)
+|.++.+.. |.. .+-+.|-...+...+-.+. +... ..|..|+. ....+.+.+....
T Consensus 594 lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 594 LYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHH
Confidence 554444321 111 1222232222222221111 1100 11222222 2333444443331
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 365 DQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 443 (599)
Q Consensus 365 ~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 443 (599)
.+-+.+.+.+... |..-..-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1112222222221 223333455666677788899999988877765 57888888888999999999887776665
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHh
Q 007543 444 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
+. .+.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--+
T Consensus 741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 53 245577788899999999999988876532 11 345566677777777665544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.048 Score=40.90 Aligned_cols=63 Identities=22% Similarity=0.435 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL---KPD-QKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+|+.+...|...|++++|+..|++.++. .... .|+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555544432 0001 111 3456667777777777777777776654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.51 Score=46.41 Aligned_cols=126 Identities=18% Similarity=0.201 Sum_probs=91.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKK-----GYAP---------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 209 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 209 (599)
-.+.|.+.|++..|..-|++.... +..+ -..+++.|.-+|.+.+++.+|++..++.+..+. +|.-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 356788899999999888875431 1111 234678888899999999999999999888753 4777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK-ARKLFALMAE 274 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 274 (599)
.+---..++...|+++.|+..|+++++.. +.|-.+-+.|+.+-.+.....+ ..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788999999999999999998653 4445555556666555555443 4667777764
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.2 Score=38.99 Aligned_cols=198 Identities=19% Similarity=0.089 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS- 391 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~- 391 (599)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555555556666555555555431 113334445555555555555666666666555432222 111111222
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 468 (599)
.+...|+++.|...+.+...... ......+......+...++.+.+...+.+..... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 0122333333333455566666666666665431 12 24455556666666666
Q ss_pred HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 469 FDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
++.|...+..... ..|+ ...+..+...+...+..+++...+.+..
T Consensus 218 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666655 2333 2333333333334555666665555543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.4 Score=36.24 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=74.7
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 298 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~ 298 (599)
.-.|..++..++..+... +.+..-+|-+|--....-+-+-..++++.+-+. -| ++.+++.+.+.
T Consensus 13 ildG~V~qGveii~k~v~------Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN------SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH------HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcC------cCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHH
Confidence 345677777777777764 223333444333333333333344444333221 01 22356666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 299 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 299 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.-+-.+- .+......-++.+.+.|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 5554432 244556667777888888888888888876544 6777778888888888888888888888887776
Q ss_pred C
Q 007543 379 C 379 (599)
Q Consensus 379 ~ 379 (599)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.7 Score=41.16 Aligned_cols=219 Identities=12% Similarity=0.157 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQ----PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY-------NILLDAFAI 360 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------~~li~~~~~ 360 (599)
.+.+++..+-+.+....+. .-+.++..++....+.++...|.+.+.-+... .|+...- ..+-+..|.
T Consensus 273 ~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~ 350 (549)
T PF07079_consen 273 SDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCE 350 (549)
T ss_pred cChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhc
Confidence 3455555554444433211 12245666777777777777777777766554 3443322 223333331
Q ss_pred c----CCHHHHHHHHHHHHhCCCCCC-HHHHH-HHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHH----HHHH
Q 007543 361 S----GMVDQARTVFKCMRRDRCSPD-ICSYT-TMLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLI----KGYA 429 (599)
Q Consensus 361 ~----g~~~~A~~~~~~m~~~~~~p~-~~~~~-~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~ 429 (599)
. -+..+=+.+++......+... .+.|- .-..-+-+.|. -++|+++++.+.+-. .-|...-|.+. ..|.
T Consensus 351 DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 351 DDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 1 123333444444444322111 11111 11123344454 888999999887642 22433333222 2222
Q ss_pred h---cCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHH--HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007543 430 K---VNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDA--YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 430 ~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 500 (599)
. ...+.+-.++-+-+.+.|++|-. ..-|.|.+| +..+|++.++.-.-.-+.+ +.|++.+|..+.-.+..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHH
Confidence 2 12333334444444466877643 345555554 5678999999988888877 89999999999888899
Q ss_pred cCcHHHHHHHHHhcc
Q 007543 501 ADERNEANELLGNFN 515 (599)
Q Consensus 501 ~g~~~~A~~~~~~~~ 515 (599)
..++++|..++.++.
T Consensus 508 ~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP 522 (549)
T ss_pred HhhHHHHHHHHHhCC
Confidence 999999999999874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.73 Score=39.67 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 177 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 177 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
......+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|....... ..|...+-....+|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----~~dp~p~f~agqC~ 115 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCCccchHHHHH
Confidence 34455566899999999999998876554 55566778888888999999999998886543 23334456678899
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q 007543 257 KKAGGYEKARKLFALMAER 275 (599)
Q Consensus 257 ~~~g~~~~A~~~~~~m~~~ 275 (599)
...|+.+.|+..|....++
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999988774
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=3 Score=43.55 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
+.-+++|++.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 334567777777777654 334556677888888887654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.08 E-value=3.2 Score=40.27 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 007543 331 EALAVFEEMLDAGVRPTHKAYNI 353 (599)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~ 353 (599)
+.+.+++.|.+.|+..+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34445555555555555444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.44 Score=44.29 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 310 QPDVVSYALLINAYGKA-----RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
+.|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+=+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 45666777777666433 45666666677777777777777777777665432211 11 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN-LEKMMEIYDKMR 445 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 445 (599)
.+-...-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+- ..+..++.-.|.
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111111121 2335678888999999999999988888998887774 334444444444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.55 Score=47.30 Aligned_cols=66 Identities=12% Similarity=-0.048 Sum_probs=49.9
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 135 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 135 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+.+...++.+...|.+.|++++|...|++..+.. |+. .+|+.+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456677788888888888888888888877763 442 35888888888888888888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.75 E-value=5.1 Score=40.14 Aligned_cols=147 Identities=12% Similarity=0.222 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GTLI 425 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 425 (599)
..+|...++...+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4566777777777777888888888888777 5677777777777665 46667777777754433 2343333 4455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 500 (599)
..+.+.++-+.|..+|+..++. +..+ ..+|..+|+-=..-|+...+..+-+.|.+ +-|...+...+.+-|.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~i 547 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhh
Confidence 6667778888888888865542 2223 45888888888888888888888888877 67777777766665543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.3 Score=44.42 Aligned_cols=23 Identities=13% Similarity=0.220 Sum_probs=10.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+.-.+.-.+++++|.+.|..+.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHh
Confidence 34444444455555554444443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.5 Score=44.22 Aligned_cols=115 Identities=12% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 362 GMVDQARTVFKCMRRDRCSPDICSYTTMLS-AYVNASDMEGAEKFFRRLKQDG---FVPNVITYGTLIKGYAKVNNLEKM 437 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A 437 (599)
...+.|.++++.+.++ -|+...|...-. .+...|++++|++.|++..... .+.....+--+...+.-..++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455666666666554 455444443332 4455566666666666544210 011222333445555566666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCCH-------hHHHHHHHHH
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAY-GKNKDF-------DSAVVWYKEM 479 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~-------~~A~~~~~~m 479 (599)
.+.|..+.+.. .-...+|.-+..+| ...|+. ++|.++|++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 66666666432 11222333222222 234544 5566666555
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.1 Score=45.34 Aligned_cols=66 Identities=23% Similarity=0.146 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346678999999999999999999999998886 4553 45899999999999999999999998875
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.29 Score=45.45 Aligned_cols=106 Identities=16% Similarity=0.364 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 007543 345 RPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 419 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 419 (599)
..|..+|.+.+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+.. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 45666777777666543 456666667777777777778777777776554321 222211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
+....-.|- .+-+-+++++++|..+|+.||..+-..|++++++.+..
T Consensus 128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111222 23356899999999999999999999999999988764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.56 E-value=2.2 Score=35.06 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
.+..+.+.|+-+.-.++++++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444444444444444444321 3444444444444444454444444444444444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.5 Score=35.75 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..++..+.+.+.......+++.+...+ ..+....+.++..|++.. ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666666666666666555 345556666666666543 2233333321 01222233344455555
Q ss_pred CCHHHHHHHHHHH
Q 007543 397 SDMEGAEKFFRRL 409 (599)
Q Consensus 397 g~~~~A~~~~~~m 409 (599)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.53 E-value=2.5 Score=41.79 Aligned_cols=136 Identities=16% Similarity=0.161 Sum_probs=85.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-ET-NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
.+.|.+.|++..|..-|++.... |.. .+ +.++.. .... .-..+++.+.-+|.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~~~~~~~~ee~~-~~~~-------~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LEYRRSFDEEEQK-KAEA-------LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hhccccCCHHHHH-HHHH-------HHHHHhhHHHHHHHhhhhHH
Confidence 35678888888888888876542 000 00 001111 1111 12345777888888999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCH-HHHHHHHHH
Q 007543 331 EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT-TMLSAYVNASDM-EGAEKFFRR 408 (599)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~-~~A~~~~~~ 408 (599)
+|+..-++.+..+ ++|+...-.-..+|...|+++.|+..|+++.+. .|+...-. .++..-.+.... +...++|..
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888876 777777777788888888888888888888865 45444333 333333333333 333556666
Q ss_pred Hhh
Q 007543 409 LKQ 411 (599)
Q Consensus 409 m~~ 411 (599)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.8 Score=37.60 Aligned_cols=90 Identities=14% Similarity=0.193 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCG---FPPDQKAKNI 493 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ 493 (599)
...-..+.+..++++|-..+.+-.. ..-.++. ..|...|-.+....++..|.+.++.--+-+ -+-+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 3344445555555555544443221 1111221 234445555555667777777776643311 1223355666
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q 007543 494 LLSLAKTADERNEANELLG 512 (599)
Q Consensus 494 ll~~~~~~g~~~~A~~~~~ 512 (599)
|+.+| ..|+.+++..++.
T Consensus 234 LL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHh-ccCCHHHHHHHHc
Confidence 66665 3556666655543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.51 E-value=2.6 Score=35.68 Aligned_cols=126 Identities=11% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. .++......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 3456677777788888888888888776 367778888888888764 3444455442 1233334457777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 499 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 499 (599)
.+.++++..++.++.. |...+..+... ++++.|.+++++ ..+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 8888888888877631 22233333333 778888777765 225556776666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.9 Score=41.47 Aligned_cols=111 Identities=5% Similarity=0.005 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
.+..+|.++-++..+.+ +-|......+..+....++++.|...|++.... .|| ..+|......+.-+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34567777777777776 458888888888888888899999999998864 566 45777777778888999999999
Q ss_pred HHHHHhCCCCCCHHH---HHHHHHHHhhcCcHHHHHHHHHh
Q 007543 476 YKEMESCGFPPDQKA---KNILLSLAKTADERNEANELLGN 513 (599)
Q Consensus 476 ~~~m~~~g~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~ 513 (599)
+++..+ ..|.... ....++.|...+ .++|.+++-+
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 999776 5665533 233344566655 6777777655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.3 Score=36.17 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=56.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHHc
Q 007543 146 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GPRPSAL---TYQIILKLFVEA 221 (599)
Q Consensus 146 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~---t~~~ll~~~~~~ 221 (599)
-++...|+++.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++..+. |.+ ... .|..-...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 46667788888888888777653 236777888888888888888888877777653 222 211 222233345555
Q ss_pred CCHHHHHHHHHHhHh
Q 007543 222 NKFKEAEEVFMTLLD 236 (599)
Q Consensus 222 g~~~~A~~~~~~~~~ 236 (599)
|+.+.|..-|+..-+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 666666666665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.97 E-value=7.7 Score=39.04 Aligned_cols=91 Identities=13% Similarity=0.181 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 398 DMEGAEKFFRRLKQDGFVPN----VITYGTLIKG--YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+.+-+++-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++
T Consensus 436 ~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 436 AIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHH
Confidence 34444444444455565542 2334444443 3456777777655555543 56777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 472 AVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
|..++.. +||+..++..-+
T Consensus 514 A~~~l~~-----LP~n~~~~dskv 532 (549)
T PF07079_consen 514 AWEYLQK-----LPPNERMRDSKV 532 (549)
T ss_pred HHHHHHh-----CCCchhhHHHHH
Confidence 7777765 466666655433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.85 E-value=3 Score=35.11 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=25.8
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
.+.|++++|.+.|+.+...-..| +-...+--.|+.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555554321111 1112333445555555555555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.73 E-value=7.2 Score=37.86 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHH
Q 007543 401 GAEKFFRRLKQDGFVPNVITYGT 423 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p~~~~~~~ 423 (599)
++.++++.+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 44445555555555544444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.67 E-value=6.6 Score=37.29 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=67.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 226 (599)
Q Consensus 147 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 226 (599)
.....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 344566667777777666655322 3445556666777777777777777666433222222222233444445554444
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 227 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 227 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 222 ~~~l~~~~aad-----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAAD-----PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444321 33566666677777777777777776655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.7 Score=34.48 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=58.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 007543 322 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASD 398 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~ 398 (599)
++...|+.+.|++.|.+.+..- +.....||.-..++--.|+.++|++-+++..+........ .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566777788888877776542 4566677777777777778887777777766542222222 22223335666777
Q ss_pred HHHHHHHHHHHhhCC
Q 007543 399 MEGAEKFFRRLKQDG 413 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~ 413 (599)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.2 Score=40.96 Aligned_cols=154 Identities=12% Similarity=0.013 Sum_probs=101.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCH
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY----TTMLSAYVNASDM 399 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~ 399 (599)
--.|+..+|-..++++++. .+.|...++-.=.+|.-.|+.+.-...++++... -.+|...| ..+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3567777888888888765 3677777877778888888888888888877653 13343222 2233355678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---GIKPNQTIFTTIMDAYGKNKDFDSAVVWY 476 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (599)
++|++.-++..+.+ +.|...-.++...+--.|++.++.++..+-... +--.-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888887765 456666667777777788888888877665421 10001112333333445568888888888
Q ss_pred HHHH
Q 007543 477 KEME 480 (599)
Q Consensus 477 ~~m~ 480 (599)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 6543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.28 Score=31.93 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKK 167 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 167 (599)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.9 Score=39.59 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+=..|..++.+.|+.++|.+.+++|.+.. ..-+..+...|+.++...+.+.++..++.+-.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3333456777778899999999999887532 112344777888899999999999988888754
|
The molecular function of this protein is uncertain. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=3.4 Score=38.71 Aligned_cols=95 Identities=21% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-P-SALTYQIILK 216 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~ 216 (599)
|+.-+..| +.|++..|...|....+.... -...++..|..++...|++++|..+|..+.+.-++ | -+..+-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44433333 345566666666665554211 01234455566666666666666666655543221 1 1234445555
Q ss_pred HHHHcCCHHHHHHHHHHhHh
Q 007543 217 LFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~ 236 (599)
...+.|+.++|..+|+++.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 55555566666666655554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.46 Score=30.87 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
+|..+...|.+.|++++|.++|++.++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4666677777777777777777777765433 4444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.81 E-value=13 Score=38.14 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 259 AGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 336 (599)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (599)
..+.+.-.+.-++..+. .|+-.+.-.++.. .....++.+++++..+.|- ..+ .+....+..-..+
T Consensus 181 ERnp~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g~~~ 247 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHGHFW 247 (539)
T ss_pred cCCHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhcccchh
Confidence 33444434443444332 2444444444443 4557888888888776541 111 0000000000111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-
Q 007543 337 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF- 414 (599)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 414 (599)
+.+..+...+-..+-..+..+.-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-.+...
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 12222222333344455667777889999999999988764311 2345677788899999999999998888654322
Q ss_pred CCCHHHHHHHHH
Q 007543 415 VPNVITYGTLIK 426 (599)
Q Consensus 415 ~p~~~~~~~li~ 426 (599)
+.-...|+..+-
T Consensus 328 kSAti~YTaALL 339 (539)
T PF04184_consen 328 KSATICYTAALL 339 (539)
T ss_pred chHHHHHHHHHH
Confidence 222344555443
|
The molecular function of this protein is uncertain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.76 E-value=3.2 Score=42.84 Aligned_cols=133 Identities=17% Similarity=0.115 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
..-.+.++.-+-+.|..+.|+.+-..-. .-.+...++|+++.|.++.++. ++...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 4447778888888888888887754322 2234556788888888765432 367788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH
Q 007543 393 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (599)
....|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 8888888888888886543 4566677777888877777776666554 234444555566777776
Q ss_pred HHHHHH
Q 007543 473 VVWYKE 478 (599)
Q Consensus 473 ~~~~~~ 478 (599)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.8 Score=43.26 Aligned_cols=104 Identities=12% Similarity=0.109 Sum_probs=54.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
-.+...++|+++.|.++.++. ++...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGD 388 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-
T ss_pred HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCC
Confidence 344455566666666554332 2555666666666666666666666665421 4445555666666
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
.+.-.++.+.....+ -+|....++...|+.++..+++.+
T Consensus 389 ~~~L~kl~~~a~~~~---------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 389 REKLSKLAKIAEERG---------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHHTT----------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc---------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 665555555544321 134444445555666666555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.5 Score=34.68 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 100 LPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 178 (599)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (599)
.|+..++......-..+++..|.+.|+.+...-++ +........|+.+|.+.|++++|...+++..+.....--+-|-.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34445555555445567788888877777766432 22344556777788888888888888887777643333344555
Q ss_pred HHHHHHhc
Q 007543 179 LMEAYGRG 186 (599)
Q Consensus 179 li~~~~~~ 186 (599)
.+.+++.-
T Consensus 88 Y~~gL~~~ 95 (142)
T PF13512_consen 88 YMRGLSYY 95 (142)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.5 Score=41.65 Aligned_cols=75 Identities=20% Similarity=0.149 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS-----SGPRPSALTYQIIL 215 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll 215 (599)
+..++..+..+|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 445666666667777777777776665422 566677777777777777777777666644 45566555544443
Q ss_pred H
Q 007543 216 K 216 (599)
Q Consensus 216 ~ 216 (599)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.29 E-value=3.2 Score=38.83 Aligned_cols=98 Identities=13% Similarity=0.108 Sum_probs=77.4
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA--PSVVSHTALME 181 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~ 181 (599)
.+.....+-..+++..|.+.|....+..+ -...+..+.+|...+...|++++|..+|..+.+.-.. .-..++-.|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 35555555667889999998877776532 2344667889999999999999999999999875211 12567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007543 182 AYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+..+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999886
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=9.8 Score=38.74 Aligned_cols=149 Identities=14% Similarity=0.100 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCCCC-CHHhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 118 WNVVSEVLEWLRIQSWWDF-NEMDFLMLITAYGK---------QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 118 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
...|+.+|+........+| ....|..+..++.. .....+|.++-+...+.+.. |..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 4466677777773222222 23444444333322 23455677777777777633 7777777777777778
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
+++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++.++. ++...-..+....++.|+.. .+++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 888888888888775433 3444544455556678888888888886642 22233334444455566544 3566666
Q ss_pred HHHH
Q 007543 268 LFAL 271 (599)
Q Consensus 268 ~~~~ 271 (599)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.25 E-value=7.1 Score=33.88 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH---
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII--- 214 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--- 214 (599)
..|..-++ +.+.++.++|+.-|..+.+.|+..-.+ ..-.+.....+.|+...|...|++.-.....|-..-=..-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444333 456788899999999998887652221 2223344567788999999999988765554543311111
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007543 215 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 279 (599)
Q Consensus 215 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 279 (599)
.-.+...|.++......+-+. ..+.+.-...-..|.-+-.+.|++.+|.+.|.++......|
T Consensus 139 a~lLvD~gsy~dV~srvepLa---~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHhccccHHHHHHHhhhcc---CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 123567788888777766664 22223344455667777788999999999998887643333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.23 E-value=11 Score=35.91 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDME 400 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 400 (599)
......|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 44567788888888888877664 33445566677788888888888888877654321112222222233333333333
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcC
Q 007543 401 GAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI-KPNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 401 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g 467 (599)
+...+-.+.-. .| |...--.+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.--|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333322 23 555555666667777777777666655553211 123344455555555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.92 E-value=7.6 Score=41.64 Aligned_cols=180 Identities=19% Similarity=0.204 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH----H-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHc
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLIN----A-YGKARREEEALAVFEEMLD-------AGVRPTHKAYNILLDAFAIS 361 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 361 (599)
...+...++...+.| +...-..+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777665 2222222222 2 3355577788888877765 33 233445555555553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCC
Q 007543 362 G-----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA--KVNN 433 (599)
Q Consensus 362 g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~ 433 (599)
. +.+.|..++...-+.| .|+...+-..+.-... ..+...|.++|....+.|.. ....+-+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 2 4555666666666655 2233222221111111 23456677777766666522 2222211111111 1225
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
.+.|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 666666666666655 3322222222333333 55555555555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.70 E-value=17 Score=37.20 Aligned_cols=187 Identities=13% Similarity=0.170 Sum_probs=108.1
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 134 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 213 (599)
Q Consensus 134 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 213 (599)
.+.+.....+++..++.+.+..-.+.+..+|..-| -+-..|..++++|..+ ..++-..+++++.+.... |++.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 35677777888888888888888888888888865 4677888888888888 567777888888775443 4433344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETN 293 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 293 (599)
|...|- .++...+...|.+++..- -| ..+.....+++.++.+. ...+
T Consensus 138 La~~yE-kik~sk~a~~f~Ka~yrf----I~--------------~~q~~~i~evWeKL~~~--------------i~dD 184 (711)
T COG1747 138 LADKYE-KIKKSKAAEFFGKALYRF----IP--------------RRQNAAIKEVWEKLPEL--------------IGDD 184 (711)
T ss_pred HHHHHH-HhchhhHHHHHHHHHHHh----cc--------------hhhhhhHHHHHHHHHHh--------------cccc
Confidence 444443 377777777777765321 11 11222223333333321 0112
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 358 (599)
Q Consensus 294 ~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (599)
.+....+...++. .|...-.+.+.-+-.-|....++++|++++....+.+ ..|...-..++..+
T Consensus 185 ~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 185 KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 3333333333332 2222333444445556666667777777777666654 44555544444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.61 E-value=13 Score=35.73 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 314 VSYALLINAYGKARREE---EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 390 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 390 (599)
.++..++.+|...+..+ +|..+++.+.... +..+.++-.-+..+.+.++.+.+.+++.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35667778887777644 5566666664432 2234455455566666788888888888888752 11223444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHhhCCCCCCH
Q 007543 391 SAY---VNASDMEGAEKFFRRLKQDGFVPNV 418 (599)
Q Consensus 391 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 418 (599)
..+ ... ....|...+..+....+.|..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 433 332 234455555555433334333
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.50 E-value=8.9 Score=33.43 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=77.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4555566677788888888888888888876554443 44455566655554443332 2233344444444422
Q ss_pred CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 449 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
=...+..++..+...|++-+|+++.+..... +......++.+..+.++...-..+++-+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0124566778888899999998888775332 1122345677777777665555444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=2.4 Score=40.31 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR-----DRCSPDICSYT 387 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 387 (599)
..++..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456778888888888888888888888776 66778888888888888888888888887765 36666666555
Q ss_pred HHHHH
Q 007543 388 TMLSA 392 (599)
Q Consensus 388 ~li~~ 392 (599)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.33 E-value=12 Score=34.78 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK---AKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+.+-|.+.|.+-.|..-+++|++. .+-+.. .+..+..+|.+.|-.++|...-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3556788999999999999999885 333333 34556678999999999988877663
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.24 E-value=15 Score=35.53 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=88.0
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCH
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMV 364 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~ 364 (599)
-+.|+..+|-..++++.+. .+.|...+...-.+|.-.|+.+.-...+++....- .+|. ..-..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3455666666666666654 34566667777777777777777777777765431 2232 2223334455577777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 365 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEIY 441 (599)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 441 (599)
++|.+.-++..+-+ +.|...-.+....+...|+..++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 77777777666543 345566666667777777777777776653321 00000111222223344456777788777
Q ss_pred HHH
Q 007543 442 DKM 444 (599)
Q Consensus 442 ~~m 444 (599)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.20 E-value=9 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=9.9
Q ss_pred HcCCHHHHHHHHHHHHH
Q 007543 258 KAGGYEKARKLFALMAE 274 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~ 274 (599)
...+.++|+..+.+-..
T Consensus 18 ~s~~~~~al~~w~~~L~ 34 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLE 34 (518)
T ss_pred cCchHHHHHHHHHHHHH
Confidence 45566666666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.02 E-value=4.9 Score=35.67 Aligned_cols=97 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
..+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+.....+....--.+.......-++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577899999999999999999999988654433 44677889999999999999988887754322222222221122
Q ss_pred -----HHHHcCCHHHHHHHHHHhH
Q 007543 217 -----LFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 217 -----~~~~~g~~~~A~~~~~~~~ 235 (599)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2345678888888887774
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.96 E-value=3.3 Score=36.75 Aligned_cols=96 Identities=17% Similarity=0.227 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT--IFTTIMDAYGKNKDFDSAVVWYKEMES---CGFPPDQKAKNI 493 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ 493 (599)
..+..+.+.|++.|+.+.|.+.|.++.+....+... ++-.+|....-.|++..+...+.+... .|-+++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 457788888899999999999999988765555533 667788888888899888888877754 222222222111
Q ss_pred HHH--HHhhcCcHHHHHHHHHhc
Q 007543 494 LLS--LAKTADERNEANELLGNF 514 (599)
Q Consensus 494 ll~--~~~~~g~~~~A~~~~~~~ 514 (599)
... .+...+++.+|-+.+-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 244578888888777664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.49 E-value=15 Score=35.87 Aligned_cols=130 Identities=15% Similarity=-0.028 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH--
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGV-----RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDIC-- 384 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~-- 384 (599)
..++..+....+.++++++.|+...+.-- .....++..|-+.|.+..++++|.-+..+..+. ++..-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34456666677778888888887754311 122346788888888888888888766654331 2221111
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 385 ---SYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 385 ---~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
....|.-++...|....|.+.-++..+ .|-.+ .......+.+.|...|+.|.|+.-|++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 222333467777887777777776543 34222 22334567778888888888887777754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.49 E-value=5.7 Score=43.03 Aligned_cols=175 Identities=13% Similarity=0.198 Sum_probs=112.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 399 (599)
.+-+.+.|++++|...|-+-+.. +.|. .+|.-|....++.+-..+++.+.+.|.. +...-+.|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34456789999999888876643 1332 3556667777788888888999888754 455557888999999999
Q ss_pred HHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 400 EGAEKFFRRLKQDGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
++-.++.+.-. .|.. .| ....+..+.+.+-.++|..+-.+... +......+ +-..|++++|++++..
T Consensus 448 ~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 98888877654 3322 13 33456667777777777776655532 22333333 4567889999999987
Q ss_pred HHhCCCCCCH--HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 479 MESCGFPPDQ--KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 479 m~~~g~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
+ +|+. .+.......+..+..-+-...+++...+.+
T Consensus 516 l-----p~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~ 552 (933)
T KOG2114|consen 516 L-----PISELLRTLNKYGKILLEHDPEETMKILIELITELN 552 (933)
T ss_pred C-----CHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcC
Confidence 6 4443 344445555555554444444444444333
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.18 E-value=16 Score=34.09 Aligned_cols=174 Identities=15% Similarity=0.141 Sum_probs=100.5
Q ss_pred CCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 99 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT 177 (599)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 177 (599)
..|.+.++......-.-|+|+.|...|+.+..+.++ +....+-..++-++-+.++++.|+..+++....-......-|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 446667776666555668999999999999877543 2334566678888889999999999999887754333333444
Q ss_pred HHHHHHHhc-------CCH---HHHHHHHHHHHhCC----CCCCHHHHHH------------HHHHHHHcCCHHHHHHHH
Q 007543 178 ALMEAYGRG-------GRY---KNAEAIFRRMQSSG----PRPSALTYQI------------ILKLFVEANKFKEAEEVF 231 (599)
Q Consensus 178 ~li~~~~~~-------g~~---~~A~~l~~~m~~~g----~~p~~~t~~~------------ll~~~~~~g~~~~A~~~~ 231 (599)
.-|.+++.- .+. .+|..-|++++..= ..||...-.. +.+.|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 445544431 223 34444444444431 2233322211 223466667777777777
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 232 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+.+++.- ...+.....+-.+..+|...|-.++|.+.-.-+.
T Consensus 191 ~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 191 EEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7776531 1111122334445566666666666665544443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.15 E-value=0.7 Score=28.44 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRR 198 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~ 198 (599)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555555555555555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.75 E-value=42 Score=38.32 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=65.0
Q ss_pred CCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 007543 345 RPTHKAYNILL----DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 420 (599)
Q Consensus 345 ~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 420 (599)
.|+...+..+. +.+...+.+++|.-.|+..-+. .-.+.+|..+|+|.+|+.+-.++... -+...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 45554444333 3334556666666666543221 23456677777777777777666532 12211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 421 --YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 421 --~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|.++.....
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 245666666777777777776665421 1223455666677888877765543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.52 E-value=35 Score=37.13 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-------YKNAEAIFRRMQSSGPRPSAL 209 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~ 209 (599)
.+|-.+.++|.+++|.++..+.... .......+-..+..|....+ -++...-|++..+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 6777888999999999999555433 33345566777777766432 245556677766554433554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.06 E-value=22 Score=34.21 Aligned_cols=18 Identities=39% Similarity=0.427 Sum_probs=11.7
Q ss_pred HhcCChHHHHHHHHHHHh
Q 007543 149 GKQGDFNKAEKVLSFMNK 166 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~ 166 (599)
.+.|+++.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356677777777776654
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=1 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 248 MFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=15 Score=31.99 Aligned_cols=132 Identities=13% Similarity=0.128 Sum_probs=91.4
Q ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---HHH
Q 007543 105 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA---LME 181 (599)
Q Consensus 105 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---li~ 181 (599)
.+.....+..-+.-++|+..|..+.+.+.-....-............|+...|...|+++-.....|-+.-=.. -.-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 34444455666778889999999988763222222233455677889999999999999987654444331111 122
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 007543 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.+..+|.+++...-.+-+-..+-..-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4567899999888888776555444455556777788899999999999999975
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.53 E-value=5.1 Score=35.85 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR 266 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 266 (599)
+.|.+.|-.+...+.--++.....| ..|....+.+++..++...++....+-.+|+..+..|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5677777777666544344333333 344446677777777777776544444677777888888888888777764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.47 E-value=39 Score=36.29 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHc
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAY-----GRGGRYKNAEAIFRRMQS-------SGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~ 221 (599)
...|.+.++...+.| ++..-..+...| ....+++.|+.+|+.+.+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888775 455444444433 345678888888888766 33 222344444455443
Q ss_pred C-----CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Q 007543 222 N-----KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-AGGYEKARKLFALMAERGV 277 (599)
Q Consensus 222 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~ 277 (599)
. +.+.|..++....+.+ .|+....-..+..... ..+...|.++|...-..|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g----~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG----NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC----CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 2 4455666666665432 3333322222221111 1344556666665555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.1 Score=26.87 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+|..+...+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 445555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.088 Score=42.88 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=19.5
Q ss_pred cchhhhhhhcCCCCcceeeecCCc
Q 007543 561 EDDAEETIACSGKEDELIFFNGDH 584 (599)
Q Consensus 561 ~~~~~~~~~~~~~e~~a~a~~~~~ 584 (599)
++++++..++.||||+||||.-..
T Consensus 52 d~~~~~~~~~~HSEKlAiafgli~ 75 (116)
T PF14432_consen 52 DEEEKEESLCYHSEKLAIAFGLIN 75 (116)
T ss_pred ccccchhhhhccHHHHHHHhcccc
Confidence 455668899999999999997544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.95 E-value=25 Score=33.42 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
++.....|..+|.+.+|.++.+...... +.+...+-.++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556666677777776666665542 3355556666666777776666666666553
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.82 E-value=39 Score=35.51 Aligned_cols=122 Identities=11% Similarity=0.099 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTL 424 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l 424 (599)
+..+|..-+..-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++.+..+--+ .|....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777777777777777777765431 111223344444444444777777766666544322 2333333322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHH
Q 007543 425 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~ 473 (599)
+ .-..|+++.|..+++.+.+. + |+.. .-..-+....+.|+.+.+.
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 2 22356777777777777654 2 4433 3333444556667766666
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.5 Score=26.13 Aligned_cols=27 Identities=11% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 455 IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.72 E-value=1.1 Score=27.11 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 243 KPDQKMFHMMIYMYKKAGGYEKAR 266 (599)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~ 266 (599)
|-+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 556777777777777777777775
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.69 E-value=36 Score=33.86 Aligned_cols=282 Identities=15% Similarity=0.101 Sum_probs=160.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALME--AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.|+-..|+++-.+-.+. +..|....-.|+. +-.-.|+++.|.+-|+.|... ++.-..-+..|.-.--+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 45666666655543321 1123333333332 233457777777777777542 1111111122222234567777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHhcc------cCCHHHHHH
Q 007543 229 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG-VQQSTVT--YNSLMSF------ETNYKEVSK 299 (599)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~--~~~ll~~------~~~~~~a~~ 299 (599)
++-+.....- +.-...+...+...|..|+++.|+++++.-.... +.++..- -..|+.+ ..+...|..
T Consensus 175 ~yAe~Aa~~A----p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 175 HYAERAAEKA----PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHhhc----cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 7666665321 2234566677777777777777777777665432 2333321 1222221 234445554
Q ss_pred HHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 007543 300 IYDQMQRAGLQPDVVS-YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD- 377 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 377 (599)
.-.+..+ +.||.+- -..-..++.+.|+..++-.+++.+-+. .|.+..+.. ..+.+.|+. +..-++...+.
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL--YVRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH--HHHhcCCCc--HHHHHHHHHHHH
Confidence 4444443 3455433 234457789999999999999999887 455444432 234455653 22222222211
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCC
Q 007543 378 RCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK-VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 378 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~ 448 (599)
..+ .+..+...+..+-...|++..|..--+..... .|....|..|.+.-.- .|+-.++...+.+..+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 112 35567777788888899998888776665543 6888888888777654 499999999999888653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.32 E-value=1.8 Score=25.89 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.26 E-value=32 Score=32.86 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 345 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
.++..+...++..+++.+++.+-.++++.-... +...|...|..+|......|+..-..++..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 455556666666666666666666666654443 344456666666666666666655555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.03 E-value=1 Score=27.36 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~ 193 (599)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.55 E-value=23 Score=30.57 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYN-ILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.+.++.+++..++..+.-. .|...... .-...+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3455566666666655443 33322211 1122344556666666666665443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.54 E-value=30 Score=32.01 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 007543 250 HMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m 272 (599)
+--..+|..+|..+.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 33344555666655555544443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.48 E-value=5.7 Score=30.66 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
++.+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-..
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555666676666777777777777777777666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.34 E-value=49 Score=34.18 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=121.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
..|.....+++..+....++.-...+..+|...| -+...|..++..|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3466667778888888888888888888888764 4667788888888887 456677788877776432 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVP--N---VITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~ 463 (599)
..-|-+ ++.+.+..+|.++...=++- + ...|..|...- ..+.+....+..++.+ .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 78888888888776542210 1 12344443321 2466667777766663 34334455666666778
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCcHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT-ADERNEANELLGN 513 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~ 513 (599)
....++++|++++....+.+ ..|...-..++..+.. -.......+++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~ 265 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLRDKYRGHSQLEEYLKI 265 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHHHhccchhHHHHHHh
Confidence 88888888888888887754 4455555555554332 2233344444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.89 E-value=80 Score=36.27 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=61.8
Q ss_pred hHHHHHHHhhhcCCCC-ChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCC-----CCCCHHhHHHHHHHHHhc-CChHHH
Q 007543 85 SAVAVLRSERTRGQPL-PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-----WDFNEMDFLMLITAYGKQ-GDFNKA 157 (599)
Q Consensus 85 ~a~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~-g~~~~A 157 (599)
+|.-+|...+.....+ |...++..+..+...+++.. .|+++++... +..++..|..-+.++.+. ++.+--
T Consensus 659 ka~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~---AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l 735 (1265)
T KOG1920|consen 659 KAAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKE---AFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHL 735 (1265)
T ss_pred hhhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHH---HHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHH
Confidence 3555665333332322 44455555555444445544 5566665431 223344444444444433 444444
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 007543 158 EKVLSFMNKKGYAPSV--VSHTALMEAYGRGGR----YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEE 229 (599)
Q Consensus 158 ~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~ 229 (599)
..++-.+....+.-+. .+|.+-...|..... .....+..+..... ..|+ .-...+|.+|.+.+ .++.|++
T Consensus 736 ~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~ 813 (1265)
T KOG1920|consen 736 ELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQ 813 (1265)
T ss_pred HHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHH
Confidence 4444444432111000 011111112222222 22222322222222 2344 33456667777766 5666666
Q ss_pred HHHHhH
Q 007543 230 VFMTLL 235 (599)
Q Consensus 230 ~~~~~~ 235 (599)
......
T Consensus 814 kI~~l~ 819 (1265)
T KOG1920|consen 814 KIKELQ 819 (1265)
T ss_pred HHHHHH
Confidence 655554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.43 E-value=46 Score=33.12 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44678888889999999999999999887643111 333444445666677888999988887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.43 E-value=30 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+......+...+.+..+...+...... .........+......+...+.+..+.+.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444555555555555555555554320 01123333444444444455555555555544443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.42 E-value=11 Score=39.27 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=75.5
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
-.|+++.|..++..+. ....+.+++.+-+.|..++|+++- +|...-=-+.-..++++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~----------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP----------KEIRTKVAHFLESQGMKEQALELS---------TDPDQRFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc----------hhhhhhHHhHhhhccchHhhhhcC---------CChhhhhhhhhhcCcHHHHHH
Confidence 3456666665543331 234566778888888888887642 222211112222345555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 379 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (599)
+..+. .+..-|..|.++..+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 44333 1445566666666666666666666655443 23344455555555444444343333331
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 380 SPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
.|...-+|...|+++++.+++.+
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHh
Confidence 12223344555666666655543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.32 E-value=9.6 Score=36.42 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
++++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.30 E-value=14 Score=37.38 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=74.3
Q ss_pred cCCHHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 396 ASDMEGAEK-FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 396 ~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
.|+...|-+ ++.-+....-.|+.....+ ..+...|.++.+.+.+...... +.....+..++++...+.|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 455554443 3333333322344443333 3345667777777776665432 23345566777777777777887777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCCCCccccccc
Q 007543 475 WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSIS 529 (599)
Q Consensus 475 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 529 (599)
...-|....+. ++.....-.......|-++++...|+++...+++.+..|++.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 77777654432 3333333333445566777787777777766666666666543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.29 E-value=12 Score=35.81 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC--CHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 242 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG---VQQ--STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSY 316 (599)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~--~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 316 (599)
.+....+...++..-....+++.+...+-++...- ..| +.++|-.++.. -+..+++.++..-+..|+-||.+++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 34445555566666666777888887777765431 112 23333333332 3455777777777888888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
+.+|+.+.+.+++.+|.++.-.|....
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999888888877776543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.17 E-value=34 Score=31.46 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=13.6
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC
Q 007543 461 DAYGKNKDFDSAVVWYKEMESC 482 (599)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~ 482 (599)
..-...+++.+|+.+|++....
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777776553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.99 E-value=3.1 Score=24.69 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
|..+...|...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555554443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.94 E-value=83 Score=34.95 Aligned_cols=194 Identities=12% Similarity=0.043 Sum_probs=106.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH-HHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 007543 323 YGKARREEEALAVFEEMLDAGVRPTHK-------AYNILLDA-FAISGMVDQARTVFKCMRRD----RCSPDICSYTTML 390 (599)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~~-~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li 390 (599)
.....++.+|..+..++...-..|+.. .++++-.. ....|++++|.++-+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 356678889998888875542232221 34444332 23467888888888776553 2234556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-----HHHHhcCC--HHHHHHHHHHHHHCC--CC----cCHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI-----KGYAKVNN--LEKMMEIYDKMRVNG--IK----PNQTIFT 457 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m~~~~--~~----p~~~~~~ 457 (599)
.+..-.|++++|..+..+..+..-.-+...|.... ..+...|. ..+.+..|....... -. +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888999999999888766532223333333222 22445662 333444444433210 01 1123555
Q ss_pred HHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 458 TIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKA--KNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 458 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
.+..++.+. +...+|...+.-.......|-... +..|.......|+.++|...+..+..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566666551 222223333333322211121111 22566778889999999998888663
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.93 E-value=77 Score=34.58 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+.+++|+++.+.............+....|+.|.-.|++++|-...-.|... +..-|-.-+..+...++......+
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhcc
Confidence 4556666554433322110012345668899999999999999999999865 777888888888777776543332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------hHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT--------------LLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~--------------~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
+-......+...|..++..+.. .+...-.++... ....-+. ...+...-..|+..|...++
T Consensus 446 ---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q-~Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 446 ---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ-NSESTALLEVLAHLYLYDNK 520 (846)
T ss_pred ---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh-hccchhHHHHHHHHHHHccC
Confidence 3322233456677777776665 222111111110 0000000 01122334458889999999
Q ss_pred HHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAE 274 (599)
Q Consensus 262 ~~~A~~~~~~m~~ 274 (599)
+..|++++-..++
T Consensus 521 Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 521 YEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHhccC
Confidence 9999998877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.74 E-value=82 Score=34.72 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=88.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
.+.+.+.|++++|...+-+-... +.|+ .+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34455678888888777655432 1222 3556666666777777788888887765 444556778888888888
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHH
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQM 304 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m 304 (599)
+.-.+..+..- .|.. ..-....+..+.+.+-.++|..+-.+... .......++...+++.+|.+.+..+
T Consensus 448 ~kL~efI~~~~----~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 448 EKLTEFISKCD----KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcCC----Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 77666655442 1111 11234456666677777777665544332 4556666777777777777776654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.68 E-value=12 Score=33.35 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAY 463 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 463 (599)
..-+.+.|++++|..-|.+.+..- ++. .+.|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeay 178 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAY 178 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHH
Confidence 456778999999999999988752 222 3346666677888999999999888888653 43 22333445578
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.+..++++|+.=|+++.+ ..|...
T Consensus 179 ek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHH--hCcchH
Confidence 888999999999999988 456543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=82.56 E-value=3.3 Score=25.97 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4555555555555555555555554
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.44 E-value=21 Score=27.83 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=64.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
.....++|.-+-+|+...+. ..+.+-..-+..+.+.|++++|..+.+.+. .||...|-+|-.. +.|..+++.
T Consensus 17 G~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~ 88 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALE 88 (115)
T ss_pred cchHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHH
Confidence 34567889999999987651 223333345567788999999999888773 5899999887654 778888888
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQ 212 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~ 212 (599)
.-+.+|..+| .|...+|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8788887776 34444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.12 E-value=48 Score=31.67 Aligned_cols=74 Identities=9% Similarity=0.054 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK-GYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
-.|+.+.+...-+..++..+-...+..+++.+++.+-.++++.-... +..-|...|...|..-...|+..-...
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 33555555543222345555666777777777777777776665544 444566667777777777776643333
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.10 E-value=10 Score=34.37 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 234 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 234 (599)
.++.+.+.+.+++|+.+.+.-++..+. |..+-..+++.+|-.|++++|..-++..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455555555555555554444322 4444455555555555555555544443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=52 Score=31.70 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 007543 347 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLI 425 (599)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li 425 (599)
+..+-...+.++++.|+ .++...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 34444444555555544 3344444444432 23333333333444332 12344444444443 23444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+..+.+ -.||...-...+.+|
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 56666555 33444444444322 1 223455566666663 46666666554 234544444434433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.27 E-value=43 Score=30.49 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHH
Q 007543 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSK 299 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~a~~ 299 (599)
|-+..|.--|.+.+... +.-..+||.|.-.+...|+++.|.+.|+...+....-+-...|.-+.. .|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai~----P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC----CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 44444444444444221 233467777777778888888888888887776443333344443433 367776666
Q ss_pred HHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhC
Q 007543 300 IYDQMQRAGL-QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILL-DAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 300 ~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
-+-+.-+... .|-...|--++ -+.-++.+|..-+.+--+ ..|..-|...| ..|...=..+ .+++.+...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHHHHhh
Confidence 5555544431 12122222222 223355555543332211 22333333222 2222111111 123333221
Q ss_pred CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 378 RC------SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 378 ~~------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
.- ..-..||--+..-+...|+.++|..+|+-.+.
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 10 00124566666666677777777777776554
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.27 E-value=7.8 Score=30.31 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=24.3
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 437 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..+-++.+....+.|++.+..+.+.+|.+.+++..|+++++-...
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444555666666666666666666666666666665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.01 E-value=4.4 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888888888888888888887764
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=80.71 E-value=26 Score=27.73 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=54.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
......+|..+.+|+...+. ..+.+--..+..+.+.|++++| +..- .....||...|-+|-. .+.|..+++.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHHH--HHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHHH--HhhccHHHHH
Confidence 45578899999999998762 2333334556678899999999 2222 2223678888877754 4788888888
Q ss_pred HHHHHHHhCC
Q 007543 194 AIFRRMQSSG 203 (599)
Q Consensus 194 ~l~~~m~~~g 203 (599)
..+.++..+|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 8888887665
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.26 E-value=29 Score=31.19 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=61.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS---GPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
...-+.|++.|-.+...+.--++.....|...|. ..+.++++.++.+..+. +-.+|+..+.+|...+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344789999999988876667777777777666 67889999998888754 3367899999999999999999887
Q ss_pred H
Q 007543 228 E 228 (599)
Q Consensus 228 ~ 228 (599)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.4 bits (199), Expect = 3e-16
Identities = 35/354 (9%), Positives = 95/354 (26%), Gaps = 43/354 (12%)
Query: 157 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216
A + + +P L++ +A + + K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276
+ ++ A + + + + M++ ++ + + G +++ + ++ +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-- 193
Query: 277 VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALA-V 335
AGL PD++SYA + G+ ++ +
Sbjct: 194 ------------------------------AGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395
E+M G++ +LL + ++ V P + + +L
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 396 ASDMEGAEKFFRRLKQDGFVPNV-----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 450
K LK + + + K K ++ K
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 451 PNQTIFTTIMD---AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 501
+ + + + ++ Y + C + + +L L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL--CLLDEREVVRMLLQVLQALP 395
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 8e-16
Identities = 38/310 (12%), Positives = 89/310 (28%), Gaps = 9/310 (2%)
Query: 186 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 245
G + + + + + P P +I+ K + + + + + K
Sbjct: 2 GHHHHHHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMP-FQSGEFKAL 60
Query: 246 QKMFHMMIYMY-KKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQM 304
+ + + K+ G + A + Q + + + + ++ Q
Sbjct: 61 TRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPS--GQH 118
Query: 305 QRAGLQPDVVSYALLINAYGKARREEEA---LAVFEEMLDAGVRPTHKAYNILLDAFAIS 361
+A L + A L V T YN ++ +A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 362 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVIT 420
G + V ++ +PD+ SY L D E+ ++ Q+G +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM-DAYGKNKDFDSAVVWYKEM 479
L+ + L+ + ++ + P + ++ D Y K+ +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 480 ESCGFPPDQK 489
Q
Sbjct: 299 TLQCLFEKQL 308
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 7e-10
Identities = 18/154 (11%), Positives = 42/154 (27%), Gaps = 4/154 (2%)
Query: 367 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 426
A + C R+ SP +L ++ + + Q K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 427 GYAKVNNLEK---MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483
+ L ++ ++ R ++ +M + + F V ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 484 FPPDQKAKNILLS-LAKTADERNEANELLGNFNH 516
PD + L + + + L +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.7 bits (135), Expect = 2e-08
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY-KNAEAIFRRMQS 201
++ + +QG F + VL + G P ++S+ A ++ GR + E +M
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 202 SGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261
G + AL ++L A K +V P P ++ G
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVK---PTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 262 YEKARKLFALMAERGVQQST 281
KL +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 8e-11
Identities = 71/462 (15%), Positives = 140/462 (30%), Gaps = 120/462 (25%)
Query: 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 268
Y+ IL +F +A F + + + D KS L +++ H+ +L
Sbjct: 16 YQYKDILSVFEDA--FVDNFD-CKDVQDMPKSILS-KEEIDHI----IMSKDAVSGTLRL 67
Query: 269 FALM---AERGVQQSTVT-----YNSLMS-FETNYKEVSKIYDQM--QRAGLQPDVVSYA 317
F + E VQ+ Y LMS +T ++ S + QR L D +A
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 318 LLINAYGKARREE-----EALA--------VFEEMLDAGVRPTHK---AYNILLD----- 356
Y +R + +AL + + +L +G K A ++ L
Sbjct: 128 ----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLSYKVQC 178
Query: 357 --AFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRL 409
F I + TV + M + ++T+ N + + RRL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 410 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTT----IMDAYG 464
+ N + L+ L + + N + + + TT + D
Sbjct: 238 LKSKPYENCL----LV--------LL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 465 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA--KTADERNEANE-------LLG--- 512
++ + S PD+ K++LL + D E ++
Sbjct: 283 AATTTHISL----DHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 513 --------NFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNIYHDGD-----------G 553
N+ H N + + S++ + + D +++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 554 DGDGDDNEDDAEETIACSGKEDELIFFNGDHQRSQEGLHTLQ 595
D D + S L+ + S + ++
Sbjct: 398 DVIKSDVMVVVNKLHKYS-----LV--EKQPKESTISIPSIY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 2e-10
Identities = 83/595 (13%), Positives = 159/595 (26%), Gaps = 201/595 (33%)
Query: 6 FLKPFISPSSINFSQQNVPVSPLDANFKVHRRVGVICMGMLAPRKFMQKRRKVEVFKDAA 65
K +S I+ ++ +S DA R + ++ V+ F
Sbjct: 41 MPKSILSKEEID----HIIMSK-DAVSGTLRLFWTLLS---------KQEEMVQKF---V 83
Query: 66 DEAGKKNWRRLMNQIEEVGSAVAVLR----SERTR----GQPLPKDLVLGTLVRLKQLKK 117
+E + N++ LM+ I+ +++ +R R Q K V RL+ K
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYLK 139
Query: 118 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT 177
+ + L LR + G G K + A V
Sbjct: 140 ---LRQALLELRPAKN-----------VLIDGVLG-SGKT--WV--------ALDVCLSY 174
Query: 178 ALMEAYGRG------GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 231
+ + E + +Q L YQI ++ +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWTSRSDHSSNIKL-- 225
Query: 232 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291
+ ++ L+ + Y+ L L VQ + +F
Sbjct: 226 --RIHSIQAELR-----RLLKSKPYENC--------LLVL---LNVQNAKA----WNAFN 263
Query: 292 --------TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 343
T +K+V+ D +S A +
Sbjct: 264 LSCKILLTTRFKQVT-------------DFLS-----AATTTHISLDHHSMTLTP----- 300
Query: 344 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC--SPDICSYTTMLSAYVNASDMEG 401
+ ++LL + + R+ +P S +++
Sbjct: 301 ----DEVKSLLLKYLDCR---------PQDLPREVLTTNPRRLS---IIAE--------- 335
Query: 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461
+DG + VN +K+ I + +N ++P +
Sbjct: 336 -------SIRDG--LATWDN------WKHVNC-DKLTTII-ESSLNVLEPAE-------- 370
Query: 462 AYGKNKDFDSAVVWYKEM-ESCG-FPPDQKAKNILLSL----AKTADERNEANEL----L 511
Y++M + FPP ILLSL +D N+L L
Sbjct: 371 --------------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 512 GNFNHPNNEPGINGLSISVDEEDDDDDDDED---DDDNIYHDGDGDGDGDDNEDD 563
+ I + + + + +++ D NI D D D
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 51/385 (13%), Positives = 118/385 (30%), Gaps = 61/385 (15%)
Query: 106 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMN 165
L + L ++W++V ++ + F +++ + + + +AE LS +N
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 166 KKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 225
+ + + R+ + AI ++ P + Y + L E+ +
Sbjct: 300 GLEKSSDL--LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKN 356
Query: 226 EAEEVFMTLLDEEKSPLKPDQKMFHMMI-YMYKKAGGYEKARKLFALMAERGVQQSTVTY 284
+ + L+D P++ + + + Y +AR+ F
Sbjct: 357 KLYLISNDLVD-----RHPEKAVTWLAVGIYYLCVNKISEARRYF--------------- 396
Query: 285 NSLMSFETNYKEVSKIYDQMQRA-GLQPD-VVSYALLINAYGKARREEEALAVFEEMLDA 342
++ + P ++ +++ ++A++ +
Sbjct: 397 --------------------SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR- 435
Query: 343 GVRP-THKAYNILLDAFAISGMVDQARTVF-KCMRRDRCSPDICSYTTMLSAYVNASDME 400
+ TH Y L G + A + P + + N SDM+
Sbjct: 436 -LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--LNELGVVAFNKSDMQ 492
Query: 401 GAEKFFRR-----LKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ- 453
A F+ K T+ L Y K+ + ++ ++ + N
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ--GLLLSTNDA 550
Query: 454 TIFTTIMDAYGKNKDFDSAVVWYKE 478
+ T I Y K A+ E
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 33/301 (10%), Positives = 85/301 (28%), Gaps = 43/301 (14%)
Query: 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ 246
+YK A + ++ P+ + + + A+ + +S
Sbjct: 98 QQYKCAAFVGEKVLDITGNPNDA-FWLAQVYC-CTGDYARAKCLLTKEDLYNRSS----- 150
Query: 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQR 306
++ + K ++ A L F + K +K+ Q
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNL---------------LGETNPFRKDEKNANKLLMQDG- 194
Query: 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAFAISGMVD 365
G++ + L Y + A ++E L V +A++ L+ ++ +
Sbjct: 195 -GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTA-DE 250
Query: 366 QARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421
+ V K D Y L+ + ++ AE + + +
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSDLL 308
Query: 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG----KNKDFDSAVVWYK 477
+ ++ I K+ I P + + ++ + + +
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILE--IDPY---NLDVYPLHLASLHESGEKNKLYLISN 363
Query: 478 E 478
+
Sbjct: 364 D 364
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 6e-06
Identities = 28/217 (12%), Positives = 68/217 (31%), Gaps = 12/217 (5%)
Query: 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV 173
+ + + E I + N + + + + K + + +
Sbjct: 76 AKLFSDEAANIYERA-ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT 233
+ + M+ R K+ IF++ + + L + + A ++F
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 234 LLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV---QQSTVTYNSLMSF 290
L + + I R LF + G ++S + ++F
Sbjct: 195 GLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250
Query: 291 ETNYKEVSKIYDQMQRA----GLQPDVVSYALLINAY 323
E+N +++ I +R + + ALL++ Y
Sbjct: 251 ESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 287
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 9e-06
Identities = 29/218 (13%), Positives = 80/218 (36%), Gaps = 21/218 (9%)
Query: 146 TAYGKQGDFNKA----EKVLS-FMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRR- 198
+Y + + + + Y ++ H+ + +Y++A + F++
Sbjct: 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA 210
Query: 199 ---MQSSGPRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLD-EEKSPLKPDQ-KMFHMM 252
++ T I +++++A F + E+S + P + + ++
Sbjct: 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 253 IYMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQ 305
++ K G +KA + A + G + L S + + + +D ++
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 306 RAGLQPDVVSYALLI-NAYGKARREEEALAVFEEMLDA 342
L D+ +A+ + Y + + ++A A F ++
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 20/217 (9%)
Query: 146 TAYGKQGDFNKA----EKVLS-FMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRR- 198
AY + + + L + N Y+ + S + Y Y A
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA 208
Query: 199 ---MQSSGPRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMI 253
A++ I + + + A E F + + K+ +
Sbjct: 209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268
Query: 254 YMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQR 306
+ KAG +KA + + R + + L + + +++ + ++
Sbjct: 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328
Query: 307 AGLQPDVVSYALLI-NAYGKARREEEALAVFEEMLDA 342
L + + A + + E+A A + ++L A
Sbjct: 329 KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 40/309 (12%)
Query: 146 TAYGKQGDFNKA----EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201
G+ ++A + L + + +V+ + L E G + A+ ++ +
Sbjct: 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81
Query: 202 SGPRPSALTYQIILKLFVEAN------KFKEAEEVF---MTLLDEEKSPLKPDQKMFHMM 252
+ + + L ++ + A E L++E+ P + +
Sbjct: 82 MARQHDVW-HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140
Query: 253 I-YMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMSFET---NYKEVSKIYDQ- 303
+ ++A +++ QQ L+ + ++
Sbjct: 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 304 ---MQRAGLQPDVVSYALLINAY-----GKARREEEALAVFEEMLDAGVRPTHKAYNILL 355
+ D +S A + G L + A + +
Sbjct: 201 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260
Query: 356 DAFAISGMVDQARTVF----KCMRRDRCSPDICSYTTMLS-AYVNASDMEGAEKFFRRL- 409
A + G + A V + R R D+ +L+ Y A A++
Sbjct: 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
Query: 410 ---KQDGFV 415
+ GF+
Sbjct: 321 KLANRTGFI 329
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 6e-05
Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 17/265 (6%)
Query: 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALT 210
G + + + V L AY +Y + SS P A+
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY--GVVLDEIKPSSAPELQAVR 69
Query: 211 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA 270
+ ++ + + IY Y + A +
Sbjct: 70 M--FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD--QNPDAALRTLH 125
Query: 271 LMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL---LINAYGKAR 327
TV + K +MQ D L ++
Sbjct: 126 QGDSLECMAMTVQILLKLD---RLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGE 180
Query: 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF-KCMRRDRCSPDICSY 386
+ ++A +F+EM D PT N G + A V + + +D P+
Sbjct: 181 KLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 387 TTMLSAYVNASDMEGAEKFFRRLKQ 411
+LS ++ E ++ +LK
Sbjct: 240 LVVLSQHLGKPP-EVTNRYLSQLKD 263
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 54/375 (14%), Positives = 108/375 (28%), Gaps = 60/375 (16%)
Query: 189 YKNAEAIFRRMQSSGPRP-SALTYQIILKLFVEANKFKEAEEVF---MTLLDEEKSPLKP 244
+ AE + ++ + S +T+ ++ + + + + ++ SP +
Sbjct: 74 LRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133
Query: 245 DQKMFHM---MIYMYKKAGGYEKARKLF--ALMAERGVQQSTVTYNSLMSFETNYKEVSK 299
+ + E+A+ F AL + + T N+
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193
Query: 300 IYDQMQRA-GLQPD-VVSYALLINAYGKAR----REEEALAVFEEMLDAGVRPTH-KAYN 352
D +++A L PD LL K R E E + EE L+ P
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLR 251
Query: 353 ILLDAFAISGMVDQARTVF-KCMRRDRCSPDI-----CSYTTMLSAYVNASDMEG----- 401
+ D+A + K + + + C Y + +N +
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311
Query: 402 -------AEKFFRR---LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 451
A ++ + L +A + E+ + K +
Sbjct: 312 LLELIGHAVAHLKKADEANDN----LFRVCSILASLHALADQYEEAEYYFQK--EFSKEL 365
Query: 452 NQTIFTTIMDAYG-----KNKDFDSAVVWYKEMESCGFPPD----QKAKNILLSLAKTAD 502
+ YG + K D A+ + E +K K+ L +AK
Sbjct: 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFI--EGVKINQKSREKEKMKDKLQKIAKMRL 423
Query: 503 ERN----EANELLGN 513
+N EA +L
Sbjct: 424 SKNGADSEALHVLAF 438
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 50/237 (21%)
Query: 147 AYGKQGDFNKAE----KVLSFMNKKGYA---PSV-VSHTALMEAYGRGGRYKNAEAIFR- 197
Y Q + +A L+ + +K P+V + L YG+ G+YK AE + +
Sbjct: 52 VYRDQNKYKEAAHLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 110
Query: 198 ----RMQSSGPR-PS--------ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP 244
R + G P AL Q K +E E + L+ + L P
Sbjct: 111 ALEIREKVLGKFHPDVAKQLNNLALLCQ-------NQGKAEEVEYYYRRALEIYATRLGP 163
Query: 245 DQ----KMFHMMIYMYKKAGGYEKARKLF--ALMAERGVQQST------VTYNSLMSFET 292
D K + + Y K G Y+ A L+ L + + + E
Sbjct: 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223
Query: 293 N---YKEVSKIYDQ---MQRAGLQ-PDV-VSYALLINAYGKARREEEALAVFEEMLD 341
+ ++ + + + + P V + L Y + + E A + +
Sbjct: 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 6e-04
Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 29/207 (14%)
Query: 147 AYGKQGDFNKA----EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202
Y ++G+ +A K L A + H AL + K A+ +R+ +S
Sbjct: 46 GYLQRGNTEQAKVPLRKALEI--DPSSADA---HAALAVVFQTEMEPKLADEEYRKALAS 100
Query: 203 GPR-PSALT-YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI-YMYKKA 259
R L Y L E +++EA + + + L P++ + + +
Sbjct: 101 DSRNARVLNNYGGFLY---EQKRYEEAYQRLLEAS---QDTLYPERSRVFENLGLVSLQM 154
Query: 260 GGYEKARKLF--ALMAERGVQQSTVTYNSL--MSFET-NYKEVSKIYDQMQRAGLQPD-V 313
+A++ F +L R + + ++ Y + YD +
Sbjct: 155 KKPAQAKEYFEKSLRLNR---NQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNA 209
Query: 314 VSYALLINAYGKARREEEALAVFEEML 340
S L I + A + ++
Sbjct: 210 RSLLLGIRLAKVFEDRDTAASYGLQLK 236
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/200 (14%), Positives = 68/200 (34%), Gaps = 23/200 (11%)
Query: 182 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP 241
+ G ++ AE ++ P + ++ + + + + +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----- 61
Query: 242 LKPDQKMFH-MMIYMYKKAGGYEKARKLFALMAERGVQ---QSTVTYNSL-MSFET--NY 294
P + + +YK+ G ++A + + ++ Y +L + +
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHY----RHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 295 KEVSKIYDQMQRAGLQPDVV-SYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYN 352
+ + Y + PD+ + L N R EEA A + + ++ +P A++
Sbjct: 118 EGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
Query: 353 ILLDAFAISGMVDQARTVFK 372
L F G + A F+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFE 193
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 42/402 (10%), Positives = 114/402 (28%), Gaps = 70/402 (17%)
Query: 147 AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 206
G + + ++ + + G + G+ +A + F P
Sbjct: 12 DLGTENLYFQSMADVEKHLELG------------KKLLAAGQLADALSQFHAAVDGDPD- 58
Query: 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYEKA 265
+ + Y +F+ K K A ++ LK D ++ K G ++A
Sbjct: 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQ-----LKMDFTAARLQRGHLLLKQGKLDEA 113
Query: 266 RKLF---------------ALMAERGVQQSTVTYNSLMSFET--NYKEVSKIYDQMQRAG 308
F A + + ++ +Y D++
Sbjct: 114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-- 171
Query: 309 LQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAFAISGMVDQ 366
+ L + K +A++ + ++ + +A+ + + G +
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHEL 229
Query: 367 ARTVF-KCMRRD----------RCSPDICSYTTMLSAYVNASDMEGAEKFFRR---LKQD 412
+ + +C++ D + + + A + +
Sbjct: 230 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289
Query: 413 GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDS 471
V + + ++K + + + + V ++P+ +AY + +D
Sbjct: 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSE--VLQMEPDNVNALKDRAEAYLIEEMYDE 347
Query: 472 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 513
A+ Y + A+ + + + +A LL
Sbjct: 348 AIQDY-----------ETAQEHNENDQQIREGLEKAQRLLKQ 378
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 20/169 (11%)
Query: 292 TNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-K 349
+ + + Q GL P VV+ A + L V + G+ P
Sbjct: 206 ETVQRLLPVLCQA--HGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVV 261
Query: 350 AYNILLDAFAISGMVDQARTVF-KCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFR 407
A + V + V + PD + + + ++
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLT---PDQVVAIASHGGGKQALETVQRLLPVLC 318
Query: 408 R---LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ 453
+ L D V+ + G + +++++ + + +G+ P+Q
Sbjct: 319 QAHGLTPD----QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPDQ 361
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 31/185 (16%), Positives = 61/185 (32%), Gaps = 21/185 (11%)
Query: 122 SEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKA----EKVLSFMNKKGYAPSVVSHT 177
+E+ W + + + L AY K +++KA +++L
Sbjct: 38 TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC-----LE 92
Query: 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237
A E G+ K+A ++ ++ A + ++ A + K+ E L
Sbjct: 93 ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS- 151
Query: 238 EKSPLKPD-QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ--STVTYNSLMSFETNY 294
Q + YEKAR ++ + + ST +L
Sbjct: 152 ----SPTKMQYARYRDGLSKLFTTRYEKARNSL----QKVILRFPSTEAQKTLDKILRIE 203
Query: 295 KEVSK 299
KEV++
Sbjct: 204 KEVNR 208
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 45/238 (18%), Positives = 79/238 (33%), Gaps = 50/238 (21%)
Query: 146 TAYGKQGDFNKAE----KVLSFMNKKGYA---PSV-VSHTALMEAYGRGGRYKNAEAIFR 197
Y Q + A L+ + +K P+V + L YG+ G+YK AE + +
Sbjct: 77 LVYRDQNKYKDAANLLNDALA-IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 198 -----RMQSSGPR-PS--------ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK 243
R + G P AL Q K++E E + L+ ++ L
Sbjct: 136 RALEIREKVLGKDHPDVAKQLNNLALLCQ-------NQGKYEEVEYYYQRALEIYQTKLG 188
Query: 244 PDQ----KMFHMMIYMYKKAGGYEKARKLF--ALMAER----GVQQSTV--TYNSLMSFE 291
PD K + + Y K G +++A L+ L G + E
Sbjct: 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEERE 248
Query: 292 TN---YKEVSKIYDQ---MQRAGLQ-PDVV-SYALLINAYGKARREEEALAVFEEMLD 341
K+ + + + + P V + L Y + + E A + E +
Sbjct: 249 ECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.66 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.19 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.0 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.96 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.95 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.9 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.74 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.72 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.61 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.47 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.41 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.31 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.25 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.22 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.14 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.12 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.98 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.94 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.92 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.92 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.91 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.9 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.89 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.89 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.86 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.74 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.67 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.64 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.63 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.4 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.37 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.35 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.14 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.05 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.43 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.34 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.97 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.84 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.78 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.36 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.09 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.71 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.98 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.89 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.24 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.34 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.68 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.13 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.11 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.86 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.16 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.75 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.7 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.53 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.36 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.97 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.55 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 81.98 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 80.19 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=316.98 Aligned_cols=438 Identities=10% Similarity=0.005 Sum_probs=364.1
Q ss_pred cccchhhHHHHHHHHhhhch---HHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHH
Q 007543 66 DEAGKKNWRRLMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 142 (599)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~---a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 142 (599)
+.+++..|+.++..+.+.|. |..+++.+.. ..+ .+.........+...++++.|.++++.+... +.+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 154 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD-ITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRY 154 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh-hCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHH
Confidence 44677899999999887664 5555554321 111 2233334444567788999999999877543 46788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKK---------------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
.++.+|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 233 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-C 233 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-h
Confidence 9999999999999999999953322 23346899999999999999999999999999886543 3
Q ss_pred HHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 007543 208 ALTYQII--------------------------------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 249 (599)
Q Consensus 208 ~~t~~~l--------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 249 (599)
...+..+ +..|.+.|++++|.++|+++.+. +++..++
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 308 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSDLL 308 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHHHH
Confidence 3443333 44566789999999999999742 5899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 250 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 250 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
+.++.+|.+.|++++|+++|+++.+.+. .+..+++.+... .|++++|.++++.+.+.. +.+..+++.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 9999999999999999999999997653 255556655554 699999999999998764 45788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (599)
|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998864 5678899999999999999999999999998764 458899999999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 407 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998765 458999999999999999999999999999865 66787 7899999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 481 SCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 481 ~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 854 557889999999999999999999999998765543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=298.74 Aligned_cols=398 Identities=10% Similarity=0.021 Sum_probs=343.8
Q ss_pred HHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 106 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 185 (599)
Q Consensus 106 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 185 (599)
...+..+...++++.|.++++.+.... ++..++..++.+|.+.|++++|..+|+++... +++..+|+.++.+|.+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 344455677899999999999988654 57788899999999999999999999998654 5799999999999999
Q ss_pred cCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 186 GGRYKNAEAIFRRMQSS---------------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 186 ~g~~~~A~~l~~~m~~~---------------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.|++++|+++|+++... +..++..+|..++.+|.+.|++++|.++|+++++.+ +.+...+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~ 238 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD----AKCYEAFD 238 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----chhhHHHH
Confidence 99999999999954222 223358899999999999999999999999998743 22333333
Q ss_pred H--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--
Q 007543 251 M--------------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-- 290 (599)
Q Consensus 251 ~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-- 290 (599)
. ++..|.+.|++++|.++|+++.+. .++..+|+.+...
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 3 356677889999999999998875 4788888887775
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 291 -ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 291 -~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
.|++++|.++|+++.+.+. .+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 6899999999999998763 477889999999999999999999999998764 6788999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998753 4468899999999999999999999999999875 4588999999999999999999999999999753
Q ss_pred CcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 450 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC----GFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 447889999999999999999999999999774 66787 78999999999999999999999999865543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=270.95 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 007543 297 VSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM---------VDQ 366 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~~~ 366 (599)
+..+.+.+.+.+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3445566666655544 346888999999999999999999999999999999999999999987664 789
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 367 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 367 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007543 447 NGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 501 (599)
Q Consensus 447 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 501 (599)
.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=260.82 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC------------CHHHHHHHHHHHHHcCCCCCHH
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET------------NYKEVSKIYDQMQRAGLQPDVV 314 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~------------~~~~a~~~~~~m~~~g~~~~~~ 314 (599)
.+++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.++. ..++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3566777777777777777777777777777777777777776532 3678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
||++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
+.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-25 Score=227.98 Aligned_cols=355 Identities=14% Similarity=0.105 Sum_probs=215.3
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
-..++++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34567777777777666554 3455666677777778888888888887777653 34677788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 272 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (599)
++.|+++.+..+. +..+|..+..++.+.|++++|.+.|+++++.. +.+...+..+...+...|++++|.+.|+++
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888887765322 45567777788888888888888888777542 334556677777777778888888888777
Q ss_pred HHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007543 273 AERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 273 ~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (599)
.+... .+..+|..+.. ..|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. +.+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 66421 12233333222 2455555555555555543 2234455555555555555555555555555443 33455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 55555555555566666665555555432 2234455555555555556666655555555442 335555555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 430 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+.|++++|.+.++++.+.. +.+..++..+..++.+.|++++|...++++.+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555656655555555431 22344555555555555566666555555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-24 Score=221.34 Aligned_cols=342 Identities=12% Similarity=0.099 Sum_probs=292.4
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+...++++.|...++.+.+.. +.+...|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHH
Confidence 456788999999998888765 5678899999999999999999999999998864 3367789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
|++.|+++.+..+. +...+..+...+...|++++|.+.|+++++.. +.+..+|+.+...|.+.|++++|...|++
T Consensus 120 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 120 AVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ----PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999886543 55677888889999999999999999998753 55688999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHh---cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007543 272 MAERGVQQSTVTYNSLM---SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll---~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 348 (599)
+.+.+. .+...|..+- ...+++++|...+++..... +.+..++..+...|.+.|++++|+..|+++.+.+ +.+.
T Consensus 195 al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 271 (388)
T 1w3b_A 195 AVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP 271 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH
T ss_pred HHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCH
Confidence 988642 1233343332 34689999999999998864 3367889999999999999999999999999875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007543 349 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 428 (599)
.+|..+...+.+.|++++|...|+++.+.. +.+..+++.+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 899999999999999999999999998763 6688999999999999999999999999998864 45788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 007543 429 AKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKD 468 (599)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 468 (599)
.+.|++++|.+.|+++.+. .|+ ...|..+...+...|+
T Consensus 350 ~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999964 454 6688888777766553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-22 Score=205.09 Aligned_cols=327 Identities=11% Similarity=0.083 Sum_probs=255.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 456678889999999999999999999998763 347889999999999999999999999999887543 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ---KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+|.+.|++++|.+.|+++++.. +.+. ..+..++..+...+.+..|...+ ..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------------------~~~ 157 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN----PSENEEKEAQSQLIKSDEMQRLRSQALNAF--------------------GSG 157 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------HcC
Confidence 99999999999999999998532 3334 56666655532222222222111 124
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++++|...++.+.+.. +.+...+..+..+|.+.|++++|+.+|+++.+.. +.+..++..+...|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444555555544432 3467888999999999999999999999998764 5678899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 007543 373 CMRRDRCSPDICSYTTM------------LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~ 435 (599)
++.+.. +.+...+..+ ...|.+.|++++|...|+++.+.. |+ ..+|..+...+.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998652 3344455444 788999999999999999998753 44 457889999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLS 496 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~ 496 (599)
+|.+.++++.+.. +.+..+|..+..+|...|++++|...++++.+ +.|+ ...+..+..
T Consensus 313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 9999999998652 34688999999999999999999999999998 4565 455555553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-21 Score=196.76 Aligned_cols=325 Identities=12% Similarity=0.097 Sum_probs=262.5
Q ss_pred HHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 108 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 187 (599)
Q Consensus 108 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 187 (599)
....+...++++.|.++++.+.+.. +.+...+..+..+|.+.|++++|...|+++.+.+. .+..+|..+...|.+.|
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcC
Confidence 3344566789999999999888764 46788899999999999999999999999998753 37889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 007543 188 RYKNAEAIFRRMQSSGPRPSA---LTYQII------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 252 (599)
Q Consensus 188 ~~~~A~~l~~~m~~~g~~p~~---~t~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 252 (599)
++++|.+.|+++.+..+. +. ..+..+ ...+...|++++|...|+++++.. +.+..++..+
T Consensus 109 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l 183 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELRELR 183 (450)
T ss_dssp CHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHH
Confidence 999999999999886432 33 455555 344888999999999999998643 5678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
+.+|.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK---------------------------------NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH---------------------------------CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998887531 34677888999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHh
Q 007543 333 LAVFEEMLDAGVRPTHKAYNIL------------LDAFAISGMVDQARTVFKCMRRDRCSPD-----ICSYTTMLSAYVN 395 (599)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~ 395 (599)
+..|+++.+.. +.+...+..+ ...|.+.|++++|...|+++.+. .|+ ...+..+...+.+
T Consensus 231 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 231 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHH
Confidence 99999998764 4455555554 78899999999999999999875 344 4478888899999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH------------
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDA------------ 462 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~------------ 462 (599)
.|++++|...++++.+.. +.+..+|..+..+|...|++++|.+.|+++.+. .|+ ...+..+..+
T Consensus 308 ~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhH
Confidence 999999999999988754 447889999999999999999999999999864 454 5566666532
Q ss_pred HHhcC-----CHhHHHHHHHHH
Q 007543 463 YGKNK-----DFDSAVVWYKEM 479 (599)
Q Consensus 463 ~~~~g-----~~~~A~~~~~~m 479 (599)
|...| +.+++.+.++++
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHhCCCccCCHHHHHHHHHHH
Confidence 33444 567778888874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=208.89 Aligned_cols=399 Identities=13% Similarity=0.076 Sum_probs=281.4
Q ss_pred HHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 110 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 110 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 189 (599)
..+...++++.|.+.++.+.... ++...+..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 34556788999999998888765 478888889999999999999999999888765 33678888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh----------------------------------H
Q 007543 190 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL----------------------------------L 235 (599)
Q Consensus 190 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~----------------------------------~ 235 (599)
++|+..|+++...++. +......++..+........+.+.+..+ .
T Consensus 90 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 9999999998887543 3333333333333322222222111100 0
Q ss_pred hccCC-------CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCCCCH--------HHHHHHh---c
Q 007543 236 DEEKS-------PLKPDQKMFHMMIYMYKK---AGGYEKARKLFALMAE-----RGVQQST--------VTYNSLM---S 289 (599)
Q Consensus 236 ~~~~~-------~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~~~--------~~~~~ll---~ 289 (599)
..... .-+.+...+..+...+.. .|++++|...|+++.+ ....|+. ..+..+. .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00000 001123444444444444 7888888888888877 3212221 1222222 1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (599)
..|++++|...++.+.+... +...+..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 36888888888888887653 37778888888888899999998888887764 4567788888888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 370 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 370 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+...
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 888887753 3356778888888888899999999888887653 33567788888888888999999988888875310
Q ss_pred -CcC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 450 -KPN----QTIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 450 -~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+..+
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 111 3378888888888 889999999888887742 44566777888888888999999888888765444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-20 Score=198.90 Aligned_cols=406 Identities=11% Similarity=-0.011 Sum_probs=297.6
Q ss_pred hHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q 007543 72 NWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAY 148 (599)
Q Consensus 72 ~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 148 (599)
.|...-..+.+. ..|...++...... + .+.........+...++++.|.+.++.+.+.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK-E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 344444444444 46666666433322 2 23333444445667899999999999988875 56778899999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------CC----
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG-------------------PR---- 205 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~---- 205 (599)
.+.|++++|...|+++...+. ++......++..+........+.+.+..+...+ ..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998753 344444455554444333333333222111100 00
Q ss_pred --------------------C-CHHHHHHHHHHHHH---cCCHHHHHHHHHHhHh-----ccCCCC-----CCCHHHHHH
Q 007543 206 --------------------P-SALTYQIILKLFVE---ANKFKEAEEVFMTLLD-----EEKSPL-----KPDQKMFHM 251 (599)
Q Consensus 206 --------------------p-~~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~-----~~~~~~~~~ 251 (599)
| +...+......+.. .|++++|...|+++++ ....+- +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 1 13344444444444 7999999999999986 210100 234567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 328 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 328 (599)
+...+...|++++|...|+++.+.... ...+..+.. ..+++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999876533 444444433 3688999999999998864 3467789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
+++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998875 5567889999999999999999999999988753 34678899999999999999999999999
Q ss_pred HhhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 409 LKQDGFV-PN----VITYGTLIKGYAK---VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 409 m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
+.+.... ++ ..++..+...+.. .|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8764211 12 4488899999999 999999999999998753 3457789999999999999999999999999
Q ss_pred hCCCCCCHHH
Q 007543 481 SCGFPPDQKA 490 (599)
Q Consensus 481 ~~g~~p~~~~ 490 (599)
+ +.|+...
T Consensus 477 ~--~~~~~~~ 484 (514)
T 2gw1_A 477 D--LARTMEE 484 (514)
T ss_dssp H--HCSSHHH
T ss_pred H--hccccHH
Confidence 8 5666543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-19 Score=191.51 Aligned_cols=389 Identities=13% Similarity=0.114 Sum_probs=190.0
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+...++++.|.+.++.+.... +.+...+..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...|++++
T Consensus 35 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 35 FFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 445566777777777776654 4556677777777777777777777777777654 2356777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---C-----------------------------
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE---K----------------------------- 239 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~----------------------------- 239 (599)
|+..|+.+ ...+.+.. ..+..+...+....|...++.++... .
T Consensus 112 A~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 112 AMFDLSVL-SLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHH-hcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 77777533 21111111 11222223333344444444443210 0
Q ss_pred CCCCCCH-HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHH-------HHH---HhcccCCHHHHHHH
Q 007543 240 SPLKPDQ-KMFHMMIYMYKK--------AGGYEKARKLFALMAERGVQQSTVT-------YNS---LMSFETNYKEVSKI 300 (599)
Q Consensus 240 ~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~~~~-------~~~---ll~~~~~~~~a~~~ 300 (599)
....+.. .....+...+.. .|++++|..+|+++.+.... +... +.. +....+++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 0000110 022222222211 13555555555555543211 1111 111 01113455555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
++...+.. |+...+..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.. +
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 55555542 334455555555555555555555555555443 3345555555555555555555555555555432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHH
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQTI 455 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~ 455 (599)
.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. .......
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 234455555555555555555555555555432 2234455555555555555555555555554321 0001112
Q ss_pred HHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 456 FTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 456 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+......+.+. |++++|...++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22333444444 55555555555555421 2233445555555555555555555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-18 Score=174.28 Aligned_cols=317 Identities=10% Similarity=0.060 Sum_probs=241.2
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4556778888889999999999999888764 336888888999999999999999999988876433 66788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLK---PDQKMFHMM------------IYMYKKAGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+...|++++|...|+++++.. + .+...+..+ ...+...|++++|...++++.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--------- 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL--------- 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------
T ss_pred HHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH---------
Confidence 999999999999999887532 2 234444444 345555555555555555544
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007543 283 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 362 (599)
Q Consensus 283 ~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (599)
+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 148 -----------------------~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 148 -----------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp -----------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred -----------------------HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 332 3466788889999999999999999999998775 667888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHH
Q 007543 363 MVDQARTVFKCMRRDRCSPDICSYT------------TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIK 426 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~ 426 (599)
++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 9999999999888753 23333333 2356788999999999999998875422 33 23556788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 007543 427 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAK 499 (599)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 499 (599)
.+.+.|++++|.+.+++..+.. +.+..+|..+...+.+.|++++|...++++.+ +.|+ ...+..+..+..
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 8999999999999999998752 33678999999999999999999999999988 4555 455555555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-18 Score=169.80 Aligned_cols=315 Identities=12% Similarity=0.081 Sum_probs=257.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
++..|..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++|...|+++++.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 5678889999999999999999999999886543 78899999999999999999999999998753 457789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---CH-HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQ---ST-VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 327 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~-~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 327 (599)
+...|...|++++|...|+++.+.. | +. ..+..+ ..+. ....+..+...+...|
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l--------------~~~~------~~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQL--------------VKAD------EMQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHH--------------HHHH------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHH--------------HHHH------HHHHHHHHHHHHHHcc
Confidence 9999999999999999999998752 3 11 111111 0000 0123445677899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 407 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 407 (599)
++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998875 6678899999999999999999999999998763 5578899999999999999999999999
Q ss_pred HHhhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHhcCCHh
Q 007543 408 RLKQDGFVPNVITYG------------TLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q----TIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 408 ~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~ 470 (599)
+..+.. +.+...+. .+...+.+.|++++|.+.++++.+.. |+ . ..+..+...+...|+++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHH
Confidence 998754 23444333 33677899999999999999998653 33 3 23556788999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 471 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 471 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+|...+++..+.. +.+..++..+...+...|++++|...+++..+..+
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999998842 44678899999999999999999999999876654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-18 Score=184.81 Aligned_cols=365 Identities=13% Similarity=0.065 Sum_probs=283.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.++. +..++..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 456788999999999999999999999875 348899999999999999999999999999987544 788999999999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHh----
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------GVQQSTVTYNSLM---- 288 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~~~ll---- 288 (599)
...|++++|.+.|+.+. . .|+ ..+..+..+...+...+|...++++... ...|+.......+
T Consensus 104 ~~~g~~~~A~~~~~~~~-~-----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-L-----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHh-c-----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999997442 1 222 2233355566667778888888887542 1223332222111
Q ss_pred -------------------------c------------ccCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHH
Q 007543 289 -------------------------S------------FETNYKEVSKIYDQMQRAGLQPD-------VVSYALLINAYG 324 (599)
Q Consensus 289 -------------------------~------------~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~ 324 (599)
. ..+++++|..+++.+.+.... + ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHH
Confidence 1 123678899999998876422 2 235777778899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEK 404 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 404 (599)
..|++++|...|+++.+. .|+..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999886 4668889999999999999999999999998754 4468889999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG- 483 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 483 (599)
.++++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999998765 3367889999999999999999999999998753 4457789999999999999999999999987521
Q ss_pred ----CCCCHHHHHHHHHHHhhc----------CcHHHHHHHHHhccCCCC
Q 007543 484 ----FPPDQKAKNILLSLAKTA----------DERNEANELLGNFNHPNN 519 (599)
Q Consensus 484 ----~~p~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~~ 519 (599)
.......+..+..++... |++++|...+++..+..+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 111122344445667777 999999999999765444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-18 Score=168.78 Aligned_cols=298 Identities=11% Similarity=-0.002 Sum_probs=147.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 33444555555555555555555555555442 123444444555555555555555555555543222 3444555555
Q ss_pred HHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 217 LFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 217 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
.+...| ++++|.+.|+++++.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------- 155 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM------------------- 155 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-------------------
Confidence 555555 5555555555554321 2234445555555555555555555555444321
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+.+...+..+...|...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..
T Consensus 156 --------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 156 --------------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp --------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1123334445555555555555555555554432 3334444444444444455555544444443
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 007543 376 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 455 (599)
Q Consensus 376 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (599)
+..... + .....+.+..++..+...|.+.|++++|.+.|++..+.. +.+...
T Consensus 221 ~~~~~~---------------~------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~ 272 (330)
T 3hym_B 221 EKIKAI---------------G------------NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNAST 272 (330)
T ss_dssp HHHTTT---------------S------------CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred HHhhhc---------------c------------ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHH
Confidence 310000 0 000012234556666666666666666666666666432 223556
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCc
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA-KTADE 503 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~ 503 (599)
|..+...+.+.|++++|.+.++++.+.. +.+...+..+..++ ...|+
T Consensus 273 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 273 YSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 6666666666666666666666666521 22344455555544 33443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-18 Score=166.24 Aligned_cols=288 Identities=11% Similarity=-0.007 Sum_probs=225.4
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 103 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA 182 (599)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 182 (599)
+..+.....+...++++.|.++++.+.+.. +.+...+..++.++.+.|++++|..+|+++.+.. +.+...|..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 444555555666799999999999988776 4556677788899999999999999999999864 3378899999999
Q ss_pred HHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 183 YGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 183 ~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
+...| ++++|.+.|++..+..+. +...+..+...+...|++++|.+.|+++++.. +.+...+..+...|...|+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCSHHHHHHHHHHHHTTC
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHhh
Confidence 99999 999999999999987543 67789999999999999999999999998753 4456778889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+
T Consensus 175 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 175 SKLAERFFSQALSIA---------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHHTTC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999998887641 34678899999999999999999999999876
Q ss_pred CC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 342 AG--------VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 342 ~g--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
.. .+....++..+...|...|++++|...|++..+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 42 12335677777777888888888888887776643 3355666667777777777777777777766543
Q ss_pred CCCCHHHHHHHHHHH-HhcCC
Q 007543 414 FVPNVITYGTLIKGY-AKVNN 433 (599)
Q Consensus 414 ~~p~~~~~~~li~~~-~~~g~ 433 (599)
+.+...+..+..++ ...|+
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC
T ss_pred -CCchHHHHHHHHHHHHHhCc
Confidence 23555666666655 33444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-15 Score=156.93 Aligned_cols=333 Identities=14% Similarity=0.149 Sum_probs=182.8
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----G 186 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 186 (599)
.++.+.|.+.++...+.+ ++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 345556666655555442 34555556666666 666666666666666553 55556666666655 5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----
Q 007543 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---- 258 (599)
Q Consensus 187 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 258 (599)
+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..|...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCC
Confidence 56666666666665544 44555555555555 55666666666666542 245555666666655
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---c----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 007543 259 AGGYEKARKLFALMAERGVQQSTVTYNSLM---S----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----AR 327 (599)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll---~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 327 (599)
.++.++|.+.|++..+.|. ...+..+- . ..+++++|...|+...+.| +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 5666666666666655432 22221111 1 1345556666666555543 34444455555555 55
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS---DM 399 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~ 399 (599)
+.++|+..|++..+.| +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| +.
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 5666666666655433 344455555555554 56666666666555543 3445555555555544 55
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhH
Q 007543 400 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDS 471 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 471 (599)
++|.+.|++..+.+ +...+..|...|.. .+++++|.+.|++..+.+ +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 55666666555542 44555555555555 556666666666655543 34455555555555 556666
Q ss_pred HHHHHHHHHh
Q 007543 472 AVVWYKEMES 481 (599)
Q Consensus 472 A~~~~~~m~~ 481 (599)
|..+|++..+
T Consensus 422 A~~~~~~A~~ 431 (490)
T 2xm6_A 422 AWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-15 Score=157.01 Aligned_cols=344 Identities=16% Similarity=0.142 Sum_probs=147.3
Q ss_pred HhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 007543 139 MDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSALT 210 (599)
Q Consensus 139 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t 210 (599)
..+..|...|.. .+++++|...|++..+.| +..++..|...|.. .+++++|++.|++..+.| +...
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 333444444444 444444444444444432 34444444444444 444444444444444432 3333
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 211 YQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 211 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+..|...|.. .+++++|.+.|++..+. -+...+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4444444444 44444444444444431 133344444444444 444444444444444432 111
Q ss_pred HHHHHhc---c----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 283 TYNSLMS---F----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 283 ~~~~ll~---~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
.+..+-. . .+++++|.+.|+...+.| +...+..+...|.. .+++++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 1111111 0 234444444444444432 33344444444443 444444444444444332 23333
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 352 NILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 352 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
..+...|.. .++.++|...|++..+.+ +...+..+...|... ++.++|...|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 344444444 444444444444444332 333444444444443 44444444444444432 233344
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 423 TLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 423 ~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.+...|.+.| ++++|.+.|++..+.+ +...+..+...|.. .+++++|..++++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 4444444433 4444444444444432 33444444444444 444444444444444432 233344444
Q ss_pred HHHhh----cCcHHHHHHHHHhcc
Q 007543 496 SLAKT----ADERNEANELLGNFN 515 (599)
Q Consensus 496 ~~~~~----~g~~~~A~~~~~~~~ 515 (599)
..+.. .++.++|...+++..
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHH
Confidence 44443 444444444444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-18 Score=170.84 Aligned_cols=263 Identities=8% Similarity=-0.024 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 007543 210 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289 (599)
Q Consensus 210 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 289 (599)
.+..+...+...|++++|...|+++++.. +.+..++..+...|.+.|++++|+..|+++.+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------- 128 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------- 128 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-------------
Confidence 34444555555555555555555555432 3344455555555555555555555555544321
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---------------HH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYN---------------IL 354 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---------------~l 354 (599)
+.+..++..+...|...|++++|...++++.+.. +.+...+. ..
T Consensus 129 --------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 129 --------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CT
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHH
Confidence 1234445555555555555555555555554432 11111111 02
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 355 LDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN 433 (599)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 433 (599)
+..+...|++++|...|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..++..+...|.+.|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 33333778888888888888765311 147788888888888888888888888887654 3467788888888888899
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHhhcC
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-----------QKAKNILLSLAKTAD 502 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~~~~~ll~~~~~~g 502 (599)
+++|.+.|+++.+.. +.+...|..+..+|.+.|++++|...++++.+.. +.+ ..+|..+..++...|
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 344 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLG 344 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhC
Confidence 999999888887642 3457788888888889999999998888886621 111 567888888899999
Q ss_pred cHHHHHHHHHh
Q 007543 503 ERNEANELLGN 513 (599)
Q Consensus 503 ~~~~A~~~~~~ 513 (599)
+.++|..++++
T Consensus 345 ~~~~A~~~~~~ 355 (368)
T 1fch_A 345 QSDAYGAADAR 355 (368)
T ss_dssp CGGGHHHHHTT
T ss_pred ChHhHHHhHHH
Confidence 99998888765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-17 Score=167.86 Aligned_cols=306 Identities=12% Similarity=-0.006 Sum_probs=222.6
Q ss_pred HHHhcCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 147 AYGKQGDFNKAEK-VLSFMNKKGYA---PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 147 ~~~~~g~~~~A~~-~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
++.-.|++++|.. .|++....... .+...|..+...+.+.|++++|+..|+++.+..+. +..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence 3444578888888 77765543211 13456788888999999999999999999887543 7778888889999999
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 302 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~ 302 (599)
++++|.+.|+++++.. +.+..++..+...|...|++++|...|+++.+...... ..+..+ +...
T Consensus 113 ~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~----~~~~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-HLVTPA----EEGA------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-GGCC-----------------
T ss_pred CHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHH----HHHh-------
Confidence 9999999999988653 55778889999999999999999999998887532111 100000 0000
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007543 303 QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP--THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 380 (599)
Q Consensus 303 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (599)
.. ..+ ...+..+.. +...|++++|...|+++.+.. +. +..++..+...|.+.|++++|...|+++.+.. +
T Consensus 177 ---~~-~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 177 ---GG-AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp --------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred ---hh-hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 001 111222333 338899999999999998764 23 58889999999999999999999999988753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--------
Q 007543 381 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------- 452 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------- 452 (599)
.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~ 326 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGG 326 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCcccccc
Confidence 467889999999999999999999999988764 4478889999999999999999999999988532 111
Q ss_pred ---HHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 453 ---QTIFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 453 ---~~~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
..+|..+..+|...|++++|..++++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 578999999999999999999887644
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-18 Score=170.13 Aligned_cols=265 Identities=8% Similarity=-0.048 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 287 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 287 (599)
...+..+...+.+.|++++|.+.|+++++.. +.+..++..+...|.+.|++++|+..|+++.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ----------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 3345566666666677777777776666532 4456666667777777777777776666665431
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHH
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR---------PTHKAYNILLDAF 358 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------~~~~~~~~li~~~ 358 (599)
+.+..++..+...|.+.|++++|+..|+++.+.... .....+..+...+
T Consensus 130 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 130 ----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred ----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 224556666666777777777777777766554200 0122334457778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 359 AISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 437 (599)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 437 (599)
...|++++|...|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888775311 157788888888888899999999888888764 44788899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHhhcCcH
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-------------DQKAKNILLSLAKTADER 504 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~ll~~~~~~g~~ 504 (599)
.+.|+++.+.. +.+..+|..+..+|.+.|++++|...++++.+. .| +..+|..+..++...|+.
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 267 VEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 99999988652 334778899999999999999999999988762 22 246788899999999999
Q ss_pred HHHHHHHHh
Q 007543 505 NEANELLGN 513 (599)
Q Consensus 505 ~~A~~~~~~ 513 (599)
+.+....++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999988876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-15 Score=157.09 Aligned_cols=403 Identities=11% Similarity=0.090 Sum_probs=296.5
Q ss_pred ChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 101 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 180 (599)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 180 (599)
........+. +...++.+.|..+++.+.+.. |.+...|..++..+.+.|++++|.++|++.... .|++..|...+
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 3344444443 456789999999999998764 677888999999999999999999999999987 46888888888
Q ss_pred HHH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHhccCCCCCC
Q 007543 181 EAY-GRGGRYKNAEA----IFRRMQS-SGPRP-SALTYQIILKLFVE---------ANKFKEAEEVFMTLLDEEKSPLKP 244 (599)
Q Consensus 181 ~~~-~~~g~~~~A~~----l~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~ 244 (599)
... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++.++. +...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 643 45677776665 7777654 35444 56788888887765 78999999999999852 1112
Q ss_pred CHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHhccc---
Q 007543 245 DQKMFHMMIYMYK-------------KAGGYEKARKLFALMA------ERG---VQQS--------TVTYNSLMSFE--- 291 (599)
Q Consensus 245 ~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~--- 291 (599)
....|........ +.+++..|..++.++. +.. +.|+ ...|...+...
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 2344544333211 2456777887777632 111 2333 23455444321
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHH
Q 007543 292 ----TNY----KEVSKIYDQMQRAGLQPDVVSYALLINAYGK-------ARREE-------EALAVFEEMLDAGVRPTHK 349 (599)
Q Consensus 292 ----~~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~ 349 (599)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..+|++.++.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 46778898888763 3467888888888875 78876 8999999998632355688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-I-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
.|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+..
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 9999999999999999999999999985 454 3 588889999999999999999999998763 2233334333322
Q ss_pred -HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCc
Q 007543 428 -YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD--QKAKNILLSLAKTADE 503 (599)
Q Consensus 428 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~ 503 (599)
+...|+.++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346899999999999988652 3357899999999999999999999999998853 2332 3478888888889999
Q ss_pred HHHHHHHHHhccC
Q 007543 504 RNEANELLGNFNH 516 (599)
Q Consensus 504 ~~~A~~~~~~~~~ 516 (599)
.+.+..+.+++.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-17 Score=163.06 Aligned_cols=276 Identities=10% Similarity=-0.018 Sum_probs=199.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+.+.|++++|+++|+++.+..+. +..++..+...+...|++++|.+.|+++++.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ----PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 3445667777777777777777777777665433 56677777777777777777777777777543 445677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (599)
+...|...|++++|+..|+++.+.. |+.... +.. .......+..+...+.+.|++++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----------------~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYL----------------VKN-----KKGSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------------------CCHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHH----------------Hhh-----hccchHHHHHHHHHHhhhhhHHH
Confidence 8888888888888888888776531 110000 000 00123445667788899999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 332 ALAVFEEMLDAGVRP--THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 332 A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
|+.+|+++.+.. +. +..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++
T Consensus 196 A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998875 33 68899999999999999999999999988753 456889999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCc--------CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007543 410 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IKP--------NQTIFTTIMDAYGKNKDFDSAVVWYKE 478 (599)
Q Consensus 410 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (599)
.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. ..+ +..+|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8764 3468889999999999999999999999988531 010 256899999999999999988877665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=151.08 Aligned_cols=277 Identities=10% Similarity=0.006 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 174 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 174 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
..|..+...+...|++++|+.+|+++.+..+. +..++..+...+...|++++|.+.|+++++.. +.+..++..+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la 96 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALA 96 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----cCCHHHHHHHH
Confidence 34555666666667777777777666665332 55566666666666666666666666666432 34555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 333 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (599)
..|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~----------- 132 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ---------------------------------PQYEQLGSVNLQA----------- 132 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS---------------------------------TTTTTC------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---------------------------------CccHHHHHHHhHH-----------
Confidence 66666666666666666555431 0011111111000
Q ss_pred HHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 334 AVFEEMLDAGVRPTHKAYNIL-LD-AFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~l-i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
.|+......+ .. .+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.+
T Consensus 133 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 133 -----------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVE 200 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0011111111 11 2556677777777777776643 33667777777778888888888888887776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----
Q 007543 412 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---- 487 (599)
Q Consensus 412 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 487 (599)
.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.++++.+ ..|+
T Consensus 201 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 276 (327)
T 3cv0_A 201 LR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY--MQVGGTTP 276 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTSCC-
T ss_pred hC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccccc
Confidence 54 3467778888888888888888888888887643 33567888888888888999999888888876 3344
Q ss_pred ---------HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 488 ---------QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 488 ---------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
...+..+..++...|+.++|..++++..
T Consensus 277 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 277 TGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5677788888889999999988887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-15 Score=149.43 Aligned_cols=97 Identities=7% Similarity=-0.057 Sum_probs=86.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|..+|+++.+.. +.+..+|..+...+...|++++|...|+++.+..+ .+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 456788999999999999999999998864 34788999999999999999999999999988743 3788899999999
Q ss_pred HHcCCHHHHHHHHHHhHhc
Q 007543 219 VEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~ 237 (599)
...|++++|.+.++++++.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLS 118 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999864
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=181.98 Aligned_cols=128 Identities=11% Similarity=0.185 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLK---QDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 459 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (599)
..|||++|++|++.|++++|.++|.+|. ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4577777777777777777777776654 3467788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 460 MDAYGKNKDF-DSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 460 i~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
|+++|+.|+. ++|.++|++|.+.|+.||..+|++++..+.+. .+.+.++++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence 8888887774 67778888888888888888888777655443 444444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=182.07 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEML---DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 388 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 388 (599)
-..||++||++||+.|++++|.++|.+|. ..|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998875 457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 389 MLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 389 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (599)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 9999999997 5789999999999999999999999988776654333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=148.11 Aligned_cols=258 Identities=10% Similarity=0.094 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 181 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 181 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
+.....|+++.|+..+++.....+.+.......+.++|...|+++.|...++.. -+|+..++..+...+...+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CChhHHHHHHHHHHHcCCC
Confidence 334456666666666665533222211234445556666666666666544321 2445566666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 261 GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
+.++|++.++++...+..| -+...+..+...|.+.|++++|++.+++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P-------------------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDV-------------------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp THHHHHHHHHHHHHSCCCC-------------------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred cHHHHHHHHHHHHhcccCC-------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 6666666666665432212 1333444555666666666666666655
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 007543 341 DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY---TTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 417 (599)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 417 (599)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+
T Consensus 127 ----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~ 199 (291)
T 3mkr_A 127 ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT 199 (291)
T ss_dssp ----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred ----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence 3455566666666666666666666666666542 332111 112222333466777777777766553 446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhCCCCCCH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS-AVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~ 488 (599)
...++.+..++.+.|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 6667777777777777777777777766542 2245566666766767777654 4566666666 34544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-14 Score=150.92 Aligned_cols=364 Identities=12% Similarity=0.008 Sum_probs=245.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK--------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----- 202 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 202 (599)
.....|+.|...|...|++++|++.|++..+. ..+....+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999986542 12335789999999999999999999999887642
Q ss_pred C-CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHc
Q 007543 203 G-PR-PSALTYQIILKLFVEA--NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY---KKAGGYEKARKLFALMAER 275 (599)
Q Consensus 203 g-~~-p~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 275 (599)
+ .. ....++.....++... +++++|.+.|++.++.+ +.+...+..+...+ ...++.++|++.|++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 11 2355666666666654 46899999999998753 44556666665553 4567788899999888775
Q ss_pred CCCCCHHHHHHHh-------cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007543 276 GVQQSTVTYNSLM-------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 348 (599)
Q Consensus 276 g~~~~~~~~~~ll-------~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 348 (599)
.. .+...+..+- ...+++++|.+.+++..... +.+..++..+...|.+.|++++|+..+++..+.. +.+.
T Consensus 205 ~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 NP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp CS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 32 2333333221 12467889999999888765 4467788999999999999999999999998874 5566
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 349 KAYNILLDAFAIS-------------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 409 (599)
Q Consensus 349 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 409 (599)
.++..+...|... +..++|...|++..+.. +.+..++..+...|...|++++|...|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 7777776665432 23567777787776643 334566788888999999999999999998
Q ss_pred hhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 007543 410 KQDGFVPNVI--TYGTLIK-GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 486 (599)
Q Consensus 410 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 486 (599)
.+....|... .+..+.. .+...|+.++|+..|++..+. .|+....... ...+.+++++..+.+ +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CC
Confidence 8764333221 2233332 234678999999999998864 4554332222 234455666665533 55
Q ss_pred CHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 487 DQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 487 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
+..+|..+..++...|++++|.+.+++..+.++
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 667899999999999999999999999876554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.2e-17 Score=160.43 Aligned_cols=278 Identities=11% Similarity=0.143 Sum_probs=92.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5677888888888884 2348888888888889999998888653 467788888888888888888888
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHH
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQR 306 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~ 306 (599)
+++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+... .|.+++|...|..+
T Consensus 83 yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh-----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 77766532 4456778888888888888888887763 1444444444433 24555555555544
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 386 (599)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 386 (599)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhH
Confidence 14566666666666666666666655 255666666666666666666644433221 233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--NNLEKMMEIYDKMRVNGIKP------NQTIFTT 458 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 458 (599)
..++..|.+.|++++|..+++...... +-....|+-|..+|++- +++.+..+.|.. ..+++| +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHH
Confidence 445566666666666666666655443 33455555555555543 233333333321 113333 2335566
Q ss_pred HHHHHHhcCCHhHHHH
Q 007543 459 IMDAYGKNKDFDSAVV 474 (599)
Q Consensus 459 li~~~~~~g~~~~A~~ 474 (599)
++-.|...++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 6666666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-13 Score=139.46 Aligned_cols=404 Identities=12% Similarity=0.121 Sum_probs=280.6
Q ss_pred ccchhhHHHHHHHHhhh---chHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHH
Q 007543 67 EAGKKNWRRLMNQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 143 (599)
Q Consensus 67 ~~~~~~~~~~~~~~~~~---~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 143 (599)
+.+...|..++.. .+. ..+..+++.. ....+.........+......++.+.|.++|+.+.... |+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~a-l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERL-VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHH
Confidence 4467789988874 333 3556666632 23344444555555555566789999999999998764 46666666
Q ss_pred HHH-HHHhcCChHHHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCC
Q 007543 144 LIT-AYGKQGDFNKAEK----VLSFMNK-KGYA-PSVVSHTALMEAYGR---------GGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 144 li~-~~~~~g~~~~A~~----~~~~m~~-~g~~-p~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
++. .....|+++.|++ +|+.... .|.. ++...|...+....+ .|++++|..+|++.++. +..+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~ 163 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMIN 163 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhh
Confidence 664 3345688877765 7777654 2433 367889888887765 78999999999999873 2212
Q ss_pred -HHHHHHHHHHH-------------HHcCCHHHHHHHHHH------hHhccCCCCCCC--------HHHHHHHHHHHHHc
Q 007543 208 -ALTYQIILKLF-------------VEANKFKEAEEVFMT------LLDEEKSPLKPD--------QKMFHMMIYMYKKA 259 (599)
Q Consensus 208 -~~t~~~ll~~~-------------~~~g~~~~A~~~~~~------~~~~~~~~~~~~--------~~~~~~li~~~~~~ 259 (599)
...|....... ...+++..|..++.. .++.....++|+ ...|...+......
T Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~ 243 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSN 243 (530)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcC
Confidence 23443332211 123456777777765 222111113444 35666666544332
Q ss_pred ----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHhcc----------cCCHH-------HHHHHHHHHHHcCCCCCHH
Q 007543 260 ----GGY----EKARKLFALMAERGVQQSTVTYNSLMSF----------ETNYK-------EVSKIYDQMQRAGLQPDVV 314 (599)
Q Consensus 260 ----g~~----~~A~~~~~~m~~~g~~~~~~~~~~ll~~----------~~~~~-------~a~~~~~~m~~~g~~~~~~ 314 (599)
++. +.|..+|++..... +.+...|...... .|+++ +|..+++...+.-.+.+..
T Consensus 244 ~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 244 PLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp SSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred CccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 47788898887652 2244444443322 47776 8999999998632344688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPT-H-KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 392 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 392 (599)
.|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+.. +.+...|......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~ 399 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHH
Confidence 8999999999999999999999999986 443 3 589999999999999999999999998752 2233333332222
Q ss_pred -HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHHhcCC
Q 007543 393 -YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPN--QTIFTTIMDAYGKNKD 468 (599)
Q Consensus 393 -~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~ 468 (599)
+...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346899999999999988754 3368899999999999999999999999999753 2332 5589899999999999
Q ss_pred HhHHHHHHHHHHh
Q 007543 469 FDSAVVWYKEMES 481 (599)
Q Consensus 469 ~~~A~~~~~~m~~ 481 (599)
.+.+..+.+++.+
T Consensus 479 ~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 479 LASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999977
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=140.98 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=143.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 148 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
....|++..|+..+++.......+.......+.++|...|++++|+..++. . -.|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666666554432111123445556666666666666654433 1 234555666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHc
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA 307 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~ 307 (599)
.+.+++++... ..+.+...+..+...+.+.|++++|++.+++
T Consensus 85 ~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------------------------------ 126 (291)
T 3mkr_A 85 VAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------------------------------ 126 (291)
T ss_dssp HHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------------------------------
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------------------------------
Confidence 66666665321 0133445555566666666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007543 308 GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 384 (599)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (599)
+.+...+..++..|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHH
Confidence 1244455566666666666666666666666543 332111 12223333446667777777666654 344666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRVN 447 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 447 (599)
.++.+..++.+.|++++|...|+++.+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66666667777777777777777666543 2356666666666666776654 45666666643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=151.96 Aligned_cols=348 Identities=11% Similarity=0.078 Sum_probs=171.1
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 193 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 193 (599)
..++.++|.++++.+. .+..|..|+.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556777777776662 2358889999999999999999999653 47779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 194 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 194 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 977766653 4567788899999999999999887763 366679999999999999999999999977
Q ss_pred HcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007543 274 ERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 353 (599)
Q Consensus 274 ~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (599)
++-......+...|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..++.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 22222333333478999999999988 27899999999999999999997665543 234444557
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCC------CHHHHHHHH
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA--SDMEGAEKFFRRLKQDGFVP------NVITYGTLI 425 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li 425 (599)
++..|.+.|++++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.-+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654 55677788887777765 355555555542 233343 455688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHH
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERN 505 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 505 (599)
..|.+.++++.|.. .|.++ +|+..--..+.+...+..+.+--.+...-..+ ..|.. .+-|+.++...=+..
T Consensus 290 ~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~--l~~ll~~l~~~ld~~ 360 (449)
T 1b89_A 290 FLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLL--LNDLLMVLSPRLDHT 360 (449)
T ss_dssp HHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGG--HHHHHHHHGGGCCHH
T ss_pred HHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHH--HHHHHHHHHhccCcH
Confidence 99999999998876 45554 34544444555666777777655555444443 34443 788888888888899
Q ss_pred HHHHHHHhcc
Q 007543 506 EANELLGNFN 515 (599)
Q Consensus 506 ~A~~~~~~~~ 515 (599)
.+.+++++..
T Consensus 361 r~v~~~~~~~ 370 (449)
T 1b89_A 361 RAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9999998854
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-12 Score=141.34 Aligned_cols=281 Identities=13% Similarity=0.146 Sum_probs=172.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 264 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (599)
..|++++|.++.++. . +..+|..+..++.+.|++++|.+.|.+. .|...|..++..+.+.|++++
T Consensus 1088 ~i~nldrAiE~Aerv-----n-~p~vWsqLAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEE 1152 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----N-EPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEE 1152 (1630)
T ss_pred HHhhHHHHHHHHHhc-----C-CHHHHHHHHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHH
Confidence 344455555554433 1 3455666666666777777777666443 345566666777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 265 ARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 265 A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
|.+.|....+..-.|...+. +.-+ .+++++.. ...+ .++...|..+...|...|++++|..+|...
T Consensus 1153 AIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele----~fI~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1153 LVKYLQMARKKARESYVETE--LIFALAKTNRLAELE----EFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHH----HHHh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 77777665554322222222 1111 23333222 2222 245555666677777777777777777664
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 421 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 421 (599)
..|..+...|++.|++++|.+.+++.. +..+|..+..+|...|++..|...... +..+...+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 266777777777777777777776552 556777777777777777777665543 23356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHhCCCCC------CHHHHHH
Q 007543 422 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN--KDFDSAVVWYKEMESCGFPP------DQKAKNI 493 (599)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ 493 (599)
..++..|.+.|.+++|+.+++...... +-....|+-+..++++. ++.-++.++|..-.. ++| +...|.-
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHH
Confidence 788889999999999999998877433 22344676666666653 445556665554332 444 3456888
Q ss_pred HHHHHhhcCcHHHHHHHHH
Q 007543 494 LLSLAKTADERNEANELLG 512 (599)
Q Consensus 494 ll~~~~~~g~~~~A~~~~~ 512 (599)
+.-.|.+.|+++.|...+-
T Consensus 1361 lv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHHHHHhcccHHHHHHHHH
Confidence 8888999999999885443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-13 Score=130.03 Aligned_cols=226 Identities=12% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKM 248 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~ 248 (599)
...|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|.+.++++++.... ..++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHH
Confidence 3455566666666666666666666665554 45556666666666666666666666665542100 0111 355
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007543 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 328 (599)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 328 (599)
+..+...|.+.|++++|...|++..+.. |+. ..+.+.|+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------------------------~~~-------~~~~~~~~ 120 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH----------------------------------RTA-------DILTKLRN 120 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------CCH-------HHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC----------------------------------chh-------HHHHHHhH
Confidence 6666667777777777777666665531 111 12333444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 408 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (599)
+++|...++++.... +.+...+..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+++
T Consensus 121 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 121 AEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455555555544432 2223344444444444455555544444444321 22334444444444444444444444444
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 409 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 409 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
..+.. +.+..+|..+...+.+.|++++|.+.|++..
T Consensus 199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44332 2234444444444444444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-13 Score=128.43 Aligned_cols=226 Identities=13% Similarity=0.060 Sum_probs=187.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTY 211 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~ 211 (599)
...+..+...|...|++++|...|++..+.. .+..+|..+...|...|++++|++.|++..+..+. ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567788999999999999999999999886 68899999999999999999999999998775332 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
..+...+...|++++|.+.|+++++. .|+. ..+.+.|++++|...++++....
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--------------- 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRNAEKELKKAEAEAYVN--------------- 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---------------
Confidence 89999999999999999999999864 3442 34666777888888887776531
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (599)
+.+...+..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...|
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1234567788888999999999999999998775 567888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 412 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (599)
++..+.. +.+...|..+...+...|++++|...+++..+.
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9888753 446788888999999999999999999988754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-14 Score=128.45 Aligned_cols=200 Identities=17% Similarity=0.068 Sum_probs=161.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+++...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566788889999999999999999999998875 6678899999999999999999999999998763 4467888899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 007543 390 LSAYVNA-----------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 458 (599)
Q Consensus 390 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 458 (599)
...+... |++++|+..|++..+.. +-+...+..+...|...|++++|.+.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998865 3368889999999999999999999999999876 67889999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 459 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+..++...|++++|+..++++.+.. |.+...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998842 4456778888999999999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.3e-12 Score=138.58 Aligned_cols=315 Identities=10% Similarity=0.120 Sum_probs=237.5
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
..|++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++..+.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777776542 6789999999999999999999999764 377889999999999999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh---cccCCHHHHHHHHHHHHH
Q 007543 230 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM---SFETNYKEVSKIYDQMQR 306 (599)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll---~~~~~~~~a~~~~~~m~~ 306 (599)
.+....+. .++....+.++.+|++.+++++...+. + .++...|..+- ...+++++|...|...
T Consensus 1156 yL~mArk~-----~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1156 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHhh-----cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 99988753 233334446999999999998644442 2 23444444322 2468999999999985
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 307 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 386 (599)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 386 (599)
..|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++..|......+ ..++..+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHH
Confidence 37999999999999999999999877 36789999999999999999999876643 3367778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCc------CHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--NNLEKMMEIYDKMRVNGIKP------NQTIFTT 458 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 458 (599)
..++..|.+.|.+++|+.+++...... +-....|+-|...|++- +++.++.++|..-. +++| +...|..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHH
Confidence 899999999999999999998887654 34556677777777764 45666666665433 3333 4668999
Q ss_pred HHHHHHhcCCHhHHHHHHH-------------HHHhCCCCCCHHHHHHHHHHHhhcC---------------cHHHHHHH
Q 007543 459 IMDAYGKNKDFDSAVVWYK-------------EMESCGFPPDQKAKNILLSLAKTAD---------------ERNEANEL 510 (599)
Q Consensus 459 li~~~~~~g~~~~A~~~~~-------------~m~~~g~~p~~~~~~~ll~~~~~~g---------------~~~~A~~~ 510 (599)
++-.|.+.|+++.|....- +... -..|...|...+..|...+ +.+.+.++
T Consensus 1361 lv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l 1438 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNY 1438 (1630)
T ss_pred HHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHH
Confidence 9999999999999983221 1111 2345666666666666555 66677666
Q ss_pred HHh
Q 007543 511 LGN 513 (599)
Q Consensus 511 ~~~ 513 (599)
+++
T Consensus 1439 ~~~ 1441 (1630)
T 1xi4_A 1439 FSK 1441 (1630)
T ss_pred HHH
Confidence 664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-13 Score=124.50 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=120.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
++...|..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|...|++.++.. +.+...+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~ 77 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGGYM 77 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHH
Confidence 46667777777778888888888888877776443 66777777777788888888888888777643 44566777
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 251 MMIYMYKKA-----------GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALL 319 (599)
Q Consensus 251 ~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 319 (599)
.+...+.+. |++++|+..|++..+. . +-+...+..+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------~-P~~~~~~~~l 124 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------------N-PRYAPLHLQR 124 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------------C-cccHHHHHHH
Confidence 777777666 5555555555554432 1 2244556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 399 (599)
...|...|++++|+..|++.++.. .+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++
T Consensus 125 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 125 GLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence 666666777777777776666655 556666666666666666666666666665532 23455555566666666666
Q ss_pred HHHHHHHHHH
Q 007543 400 EGAEKFFRRL 409 (599)
Q Consensus 400 ~~A~~~~~~m 409 (599)
++|...|++.
T Consensus 202 ~~A~~~~~~~ 211 (217)
T 2pl2_A 202 EEAARAAALE 211 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-13 Score=130.20 Aligned_cols=119 Identities=11% Similarity=-0.025 Sum_probs=72.2
Q ss_pred cCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYA---PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
.|++++|.+.|+++.+.... .+..+|..+...|...|++++|+..|+++.+..+. +..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45666666666666654211 13455666666666666777776666666654322 555666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+.|+++++.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 97 ~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 97 YEAFDSVLELD----PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHC----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666532 33455666666666666666666666666554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-12 Score=129.73 Aligned_cols=313 Identities=12% Similarity=0.036 Sum_probs=224.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc---C
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G--PRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEE---K 239 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~ 239 (599)
.....||.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...++++++.. .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987542 1 122 46789999999999999999999999886531 1
Q ss_pred CC-CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHH-HHHHHh------cccCCHHHHHHHHHHHHHcCC
Q 007543 240 SP-LKPDQKMFHMMIYMYKKA--GGYEKARKLFALMAERGVQQSTV-TYNSLM------SFETNYKEVSKIYDQMQRAGL 309 (599)
Q Consensus 240 ~~-~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll------~~~~~~~~a~~~~~~m~~~g~ 309 (599)
.. ......++..+..++.+. +++++|+..|++..+.. |+.. .+..+. ...++.++|.+.+++..+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 11 122356677766666655 46999999999998763 4432 222221 12467778888888888764
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007543 310 QPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS 385 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 385 (599)
+.+...+..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...|++..+.. +.+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3356666666655554 456789999999988775 6678889999999999999999999999988753 335666
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 386 YTTMLSAYVNA-------------------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 386 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+..+...|... +..+.|...+++..+.. +.+..++..+...|...|++++|.+.|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 76666655432 34567888888877654 33566788899999999999999999999987
Q ss_pred CCCCcCHH--HHHHHHH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 447 NGIKPNQT--IFTTIMD-AYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 447 ~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
....+... .+..+.. .....|++++|+..+++..+ +.|+....
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~ 408 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK 408 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH
Confidence 64333221 2333333 24578999999999999988 66765433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-13 Score=126.51 Aligned_cols=131 Identities=12% Similarity=0.102 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIILK 216 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~ 216 (599)
..+......+.+.|++++|.+.|++..+... .+...|..+...|...|++++|++.|++..+.+..+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3444556666667777777777777666532 244466666666777777777777776666532111 1233556666
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...|++++|.+.|+++++.. +.+..++..+...|...|++++|...|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 6666666666666666665432 33445566666666666666666666655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-12 Score=122.48 Aligned_cols=207 Identities=12% Similarity=0.056 Sum_probs=163.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~ 83 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------------------------------PSSADAHAALAVVFQT 83 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------------------------CChHHHHHHHHHHHHH
Confidence 4567777778888888888888887776531 2356778888888999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEK 404 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 404 (599)
.|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.+..| +...+..+...+...|++++|..
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888765 4577788888888999999999999999887733344 45677778888889999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 007543 405 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 484 (599)
Q Consensus 405 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 484 (599)
.++++.+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.++++++.+ .
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~ 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--L 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--H
Confidence 999887754 3467888888888999999999999999888643 34567788888888899999999999998877 3
Q ss_pred CCCHHH
Q 007543 485 PPDQKA 490 (599)
Q Consensus 485 ~p~~~~ 490 (599)
.|+...
T Consensus 239 ~p~~~~ 244 (252)
T 2ho1_A 239 YPGSLE 244 (252)
T ss_dssp CTTSHH
T ss_pred CCCCHH
Confidence 455443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=131.64 Aligned_cols=185 Identities=12% Similarity=0.011 Sum_probs=89.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 185 RGGRYKNAEAIFRRMQSSGPR---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
..|++++|++.|+++.+.... .+..++..+...+...|++++|.+.|+++++.. +.+..++..+...|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHccC
Confidence 345566666666666554221 123445555555666666666666666655432 3345555555555556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 93 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD---------------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666555555554420 12344555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 342 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
.. |+.......+..+...|++++|...+++..... +++...+. ++..+...++.++|...+++..
T Consensus 140 ~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 140 DD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred hC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence 32 222222223333344455555555554443321 12222222 3333444444444444444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-12 Score=130.62 Aligned_cols=248 Identities=7% Similarity=0.011 Sum_probs=177.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
...|..+...+.+.|++++|++.|+++.+... -+..+|+.+..++...|+ +++|+..|++.++..+. +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 34577788888889999999999999888743 368889999999999996 99999999999886554 7778888888
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
++...|++++|+..|+++++.+ +.+..+|..+..++.+.|++++|+..|+++.+..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-------------------- 230 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-------------------- 230 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------------
Confidence 8889999999999999888754 5677888888888888888888888888887652
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGK-ARREEEA-----LAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQAR 368 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~ 368 (599)
+-+...|+.+..++.+ .|..++| +..|++.+... +-+...|+.+...+.+.| ++++|+
T Consensus 231 -------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 231 -------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 2356677777777777 5554555 46677776654 445667777777777666 467777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hhCCCCCCHHHHHHHHHHH
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNAS---------DMEGAEKFFRRL-KQDGFVPNVITYGTLIKGY 428 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~ 428 (599)
+.+.++ + ..+.+...+..+...|.+.| ..++|+++++++ .+.+ +-....|..+...+
T Consensus 297 ~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 297 NQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777666 2 22445566666666666653 246677777666 4432 22334444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-12 Score=117.77 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007543 245 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 324 (599)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 324 (599)
+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence 45566677777777777777777777665531 224556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGA 402 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 402 (599)
..|++++|...++++.+.. +.+..++..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776654 44666777777777777 777777777777776322233 45666777777777777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 403 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 403 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777776653 2356677777777777778888877777776542113556666667777777777777777777765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-12 Score=120.86 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=149.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+..+. +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3556778888888899999999998887764 336778888888888888888888888888776433 67777888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
+...|++++|.+.++++++ ....+.+...+..+...|.+.|++++|...|+++.+..
T Consensus 115 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------- 171 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------------------- 171 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------
Confidence 8888888888888888864 11123345667777788888888888888877766531
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
+.+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++++.+.
T Consensus 172 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 172 ------------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2245667777777777888888888887776654 455666777777777777777777777777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-11 Score=115.75 Aligned_cols=222 Identities=14% Similarity=0.054 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..++..+...+...|++++|.+.|++..+ +.+...+..+...|.. .+++++|...|++..+.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 34444444555555555555555555543 2233444555555555 55555555555544432
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 284 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 284 ~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 72 ------------------------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 72 ------------------------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp ------------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ------------------------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 1 34445555555555 666666666666665543 4555666666666
Q ss_pred H----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 007543 360 I----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK- 430 (599)
Q Consensus 360 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~- 430 (599)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 6 666666666666666543 45555556666665 667777777776666543 45566666667766
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhC
Q 007543 431 ---VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESC 482 (599)
Q Consensus 431 ---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 482 (599)
.+++++|.+.|++..+.+ +...+..+...|.. .+++++|.+++++..+.
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 777777777777766653 24556666666666 77777777777777664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=124.36 Aligned_cols=232 Identities=15% Similarity=0.104 Sum_probs=128.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.....+...|++++|...|+++++.. +.+..++..+...|...|++++|+..+++..+.+..+
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 70 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT------------- 70 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT-------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch-------------
Confidence 33444445555555555555554422 2223344555555555555555555555544421000
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
......|..+...|...|++++|+..|++..+.. +.+..++..+...|...|++++|...|+
T Consensus 71 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 71 -----------------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp -----------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred -----------------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1123345555555666666666666666655543 3344566666666666666666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNG- 448 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~- 448 (599)
+..+. .+.+...+..+...+...+++++|.+.|+++.+.. +.+...+..+...+...|+ +++|...+++..+..
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 66554 13344555555523333447777777777666543 2245666666666666666 666777777665421
Q ss_pred CCcC------HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 449 IKPN------QTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
-.|+ ..+|..+...|.+.|++++|...++++.+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1122 24666777777778888888888887776
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-12 Score=117.79 Aligned_cols=201 Identities=13% Similarity=-0.010 Sum_probs=119.7
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.|+++.+..+ .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 4455666667777777777777777666643 22466666677777777777777777776665432 255566666666
Q ss_pred HHHc-CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 218 FVEA-NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 218 ~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
+... |++++|...++++++ ....+.+...+..+...+...|++++|...|+++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------- 143 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-------------------- 143 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------
T ss_pred HHHhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 6666 666666666666664 11112234556666666666666666666666555431
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
+.+...+..+...+.+.|++++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.
T Consensus 144 -------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 144 -------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1234455556666666666666666666665543 2 445555555555566666666666666554
Q ss_pred h
Q 007543 376 R 376 (599)
Q Consensus 376 ~ 376 (599)
+
T Consensus 210 ~ 210 (225)
T 2vq2_A 210 A 210 (225)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=128.86 Aligned_cols=230 Identities=10% Similarity=0.081 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
..+|+.+...+.+.|++++|++.|++.++..+. +...|..+..++...|+ +++|+..|+++++.+ +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 567888888899999999999999999886544 67788888899999996 999999999998754 567888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (599)
+..++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD---------------------------------AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHcCChHH
Confidence 9999999999999888888887641 3467788888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQA-----RTVFKCMRRDRCSPDICSYTTMLSAYVNAS--DMEGAE 403 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~ 403 (599)
|+..|+++++.. +.+...|+.+...+.+ .|..++| +..|++.++.. +-+...|+.+...+...| +.++|+
T Consensus 219 Al~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 999999988875 5577888888888888 5554666 46666666542 234556666666666666 466666
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAKVN---------NLEKMMEIYDKM 444 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 444 (599)
+.+.++ +.. +.+...+..++..|.+.| .+++|.++|+++
T Consensus 297 ~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 297 NQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 666665 322 335566666666666653 246666666666
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-11 Score=116.01 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=76.2
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSALTYQ 212 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 212 (599)
++..+..+...|...|++++|.+.|++..+. .+..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3455556666666666666666666666663 245566666666666 666666666666666554 555566
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 007543 213 IILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAE 274 (599)
Q Consensus 213 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 274 (599)
.+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 66666666 66666666666666542 145555556666655 5555555555555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-12 Score=123.37 Aligned_cols=201 Identities=14% Similarity=0.107 Sum_probs=125.4
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
....|..+...+...|++++|...|+++.+.. +.+...|..+...|...|++++|++.|+++.+..+ .+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 34556677777888888888888888887753 33677788888888888888888888888776543 25667777777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
.+...|++++|.+.++++++.. +.+..++..+...+.+.|++++|...++++.+..
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------- 155 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG----MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-------------------- 155 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT----CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------
Confidence 7777888888888877776543 4456677777777777777777777777665531
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
+.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...++++.+
T Consensus 156 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 156 -------------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp -------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 2244556666667777777777777777766553 34556666666667777777777777766655
Q ss_pred C
Q 007543 377 D 377 (599)
Q Consensus 377 ~ 377 (599)
.
T Consensus 222 ~ 222 (243)
T 2q7f_A 222 I 222 (243)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=122.76 Aligned_cols=199 Identities=15% Similarity=0.139 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
...|..+...+...|++++|...|+++.+. .+.+...+..+...|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~ 69 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------------------------------NKEDAIPYINFANLLSS 69 (243)
T ss_dssp -------------------CCTTHHHHHTT---------------------------------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------------------CcccHHHHHHHHHHHHH
Confidence 345555666666667777776666666543 12345666677777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
.|++++|+..++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 70 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 70 VNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 777777777777776654 4466677777777777788888887777776643 34566777777778888888888888
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 88777653 3467777788888888888888888888877542 33466788888888888888888888888877
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=134.37 Aligned_cols=367 Identities=14% Similarity=0.106 Sum_probs=235.5
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF---NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-- 187 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-- 187 (599)
...++++.|.+.++.+.+.+ +...+..|..+|...|+. ++|.+.|++..+. +...+..|...+...|
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 44678899999998887765 345566777888888888 8999999998864 6667778877666655
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 188 ---RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE---AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 188 ---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
++++|+..|++..+.|.. + .+..|...|...+..+. +.+.+....+. .+......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCC
Confidence 788999999999887643 2 66677777877765444 44444444432 234467778888888885
Q ss_pred HHHH----HHHHHHHHHcCCCCCHH-HHHHHhcccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 007543 262 YEKA----RKLFALMAERGVQQSTV-TYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----RRE 329 (599)
Q Consensus 262 ~~~A----~~~~~~m~~~g~~~~~~-~~~~ll~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 329 (599)
++++ ..+++..... .|+.. ....+....+ +.++|.+.|+...+.| .++...+..|...|... +++
T Consensus 157 ~~~~~~~a~~~~~~a~~~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNT--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GGGGHHHHHHHHHHHTTT--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred cccCHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 5444 4444433322 23311 1112222356 7889999999998887 45666666777777555 689
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDA-F--AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-----DMEG 401 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~ 401 (599)
++|+..|++.. .| +...+..|... | ...+++++|...|++..+.| +...+..+...|. .| +.++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 55666666666 3 46889999999999998876 7778888887777 55 9999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHH
Q 007543 402 AEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAV 473 (599)
Q Consensus 402 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 473 (599)
|...|++.. . -+...+..|...|.. ..++++|.+.|++..+.|. ......|...|.. ..+.++|.
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999887 3 367778888877776 3489999999999988762 3344455555553 56899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 474 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+++...+.| .++.......+......++.++|..+.++..
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998877 3333333233333344567788888887754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-12 Score=130.88 Aligned_cols=305 Identities=15% Similarity=0.109 Sum_probs=200.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CCC-CCC
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SPL-KPD 245 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~ 245 (599)
....+......+...|++++|+..|++..+.++. + ..++..+...+...|++++|...++++++... .+. +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4555566666666667777777776666654322 2 23555666666677777777777666543210 010 112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007543 246 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 325 (599)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 325 (599)
..++..+...|...|++++|...+++..+. ..... .......++..+...|..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SRELN--DKVGEARALYNLGNVYHA 139 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHhcc--cccchHHHHHHHHHHHHH
Confidence 456777888888888888888888776642 11110 000113467777788888
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-
Q 007543 326 ARR--------------------EEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC- 379 (599)
Q Consensus 326 ~g~--------------------~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~- 379 (599)
.|+ +++|...+.+..+. +.. ....++..+...|...|++++|...+++..+...
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 888 88888888876532 111 1234678888899999999999999988765310
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007543 380 SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN--- 447 (599)
Q Consensus 380 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 447 (599)
.++ ..++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|.+.+++..+.
T Consensus 220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 122 247788888999999999999999987642100 11 567888999999999999999999988742
Q ss_pred -CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCcH
Q 007543 448 -GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTADER 504 (599)
Q Consensus 448 -~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~ 504 (599)
+-.+. ..++..+...|...|++++|...+++..+ .+..+. ..++..+...+...|+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 21111 45788899999999999999999998764 221222 23455566666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=132.49 Aligned_cols=283 Identities=12% Similarity=0.070 Sum_probs=178.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS----GP-RPSALT 210 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t 210 (599)
.+..+...+...|++++|...|+++.+.+.. +. .+|..+...|...|++++|++.|++..+. +. .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3446778889999999999999999886422 33 57888999999999999999999887653 11 123457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccC--CCCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 007543 211 YQIILKLFVEANKFKEAEEVFMTLLDEEK--SPLKPDQKMFHMMIYMYKKAGG-----------------YEKARKLFAL 271 (599)
Q Consensus 211 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~ 271 (599)
+..+...|...|++++|...++++++... ...+....++..+...|...|+ +++|+..+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 78888899999999999999998875310 0012234578888889999999 6666666655
Q ss_pred HHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC---
Q 007543 272 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT--- 347 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~--- 347 (599)
..+ +...... ......++..+...|...|++++|+..+++..+... .++
T Consensus 209 al~-------------------------~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 209 NLK-------------------------LMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHH-------------------------HHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHH-------------------------HHHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 443 2222100 011234677778888888888888888887754310 011
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHH
Q 007543 348 -HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLI 425 (599)
Q Consensus 348 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li 425 (599)
..++..+...|...|++++|...|++...... +.+. .....++..+.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~la 310 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSLG 310 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHHH
Confidence 12445555555555555555555554433100 0000 01134455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 426 KGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
..|...|++++|.+.+++..+. +-.+ ...++..+...|.+.|++++|..++++..+
T Consensus 311 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 311 NTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666665531 1011 133666677777777777777777777765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=129.57 Aligned_cols=286 Identities=12% Similarity=0.067 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhcc--CCCCCCCH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA----LTYQIILKLFVEANKFKEAEEVFMTLLDEE--KSPLKPDQ 246 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 246 (599)
...+..+...+...|++++|+..|+++.+.++. +. ..+..+...|...|++++|...++++++.. ....+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345566778899999999999999999886443 33 478888899999999999999999887531 01112345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007543 247 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 326 (599)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 326 (599)
.++..+...|...|++++|...|++..+. +.... .......++..+...|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL-------------------------ARQLG--DRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHHhh--chHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999887652 11110 0011234677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 327 RR-----------------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 327 g~-----------------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
|+ +++|+..+++..+. ...... ......++..+
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~~--~~~~~~~~~~l 229 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLGD--RGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTC--HHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcCC--HHHHHHHHHHH
Confidence 88 67777666654321 111100 00012234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIK-PNQTIFTTI 459 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~l 459 (599)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +-. ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555443110 011 236777888888899999999888887642 111 114578889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhccC
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESC----GFPPD-QKAKNILLSLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 516 (599)
...+...|++++|..++++..+. +..+. ..++..+..++...|++++|..++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988652 11111 34677788899999999999999998653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=131.10 Aligned_cols=306 Identities=15% Similarity=0.055 Sum_probs=221.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP- 206 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 206 (599)
.....+..+...+.+.|++++|...|++..+.+.. + ..+|..+...|...|++++|...|++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34456667888999999999999999999886422 3 357889999999999999999999987542 2122
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-C-CCCCHHHHHHHHHHHHHcCC--------------------HHH
Q 007543 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-P-LKPDQKMFHMMIYMYKKAGG--------------------YEK 264 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~--------------------~~~ 264 (599)
...++..+...+...|++++|...++++++.... + ......++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2456778888999999999999999988753110 0 01114578888889999999 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 265 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 265 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
|...+.+..+. +.. .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 166 A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77777665431 111 11111 23467888899999999999999999886431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 007543 344 V-RPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 413 (599)
Q Consensus 344 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 413 (599)
. .++ ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 122 23788889999999999999999998764310 112 4577888889999999999999999876431
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHh
Q 007543 414 F-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 414 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~ 470 (599)
. .++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1 112 567888999999999999999999987642 21222 346677777777777653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-10 Score=121.79 Aligned_cols=427 Identities=11% Similarity=0.085 Sum_probs=291.6
Q ss_pred hHHHHHHHhhhcCCCCChHHHHHHHHHhhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCC---hHHHHHHH
Q 007543 85 SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVL 161 (599)
Q Consensus 85 ~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 161 (599)
+.+..|+.. ....+...+.....+..+...+....+..+++.+... ++.....|..-+..-.+.|+ ++.+.++|
T Consensus 50 d~i~~lE~~-l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDM-IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHH-HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334445432 2344556666666666556667888899999988876 36777888888888888888 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHH---------
Q 007543 162 SFMNKKG-YAPSVVSHTALMEAYGRGGRY--------KNAEAIFRRMQS-SGP-RP-SALTYQIILKLFVE--------- 220 (599)
Q Consensus 162 ~~m~~~g-~~p~~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~p-~~~t~~~ll~~~~~--------- 220 (599)
++..... .+|++..|..-+.-..+.+.. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998863 137899999888777665543 334477777654 466 55 35677887776542
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-------
Q 007543 221 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG-------------GYEKARKLFALMAER--GVQ------- 278 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~~--g~~------- 278 (599)
.++++.+.++|++++.. +...-..+|......-...+ +++.|...+.++... ++.
T Consensus 207 q~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34577889999999842 22222345544433222211 233455555544321 111
Q ss_pred --------C-----C---HHHHHHHhccc-C---------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 279 --------Q-----S---TVTYNSLMSFE-T---------NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 279 --------~-----~---~~~~~~ll~~~-~---------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
| + ...|...+... . ..+.+..+|++....- +-+...|...+..+.+.|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 12344444321 1 1234567788887763 44778888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 007543 333 L-AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------CSPD------------ICSYTTML 390 (599)
Q Consensus 333 ~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li 390 (599)
. .+|++.... ++.+...|...+...-+.|++++|..+|+.+.... -.|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 36677778889999999999999999999987631 0132 23678888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
....+.|+.+.|.++|.++.+.-..+....|...+..-.+.+ +.+.|.++|+...+. ++-+...|..+++.....|+.
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 888889999999999999987611223344444333334444 599999999999875 344677888999988999999
Q ss_pred hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 470 DSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
+.|..+|++......++ ....|...+..-.+.|+.+.+..+.+++.+..++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999998753222 2356888888889999999999999998755443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-11 Score=123.35 Aligned_cols=297 Identities=12% Similarity=0.089 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---
Q 007543 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG-----DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK--- 190 (599)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--- 190 (599)
++|.+.++...+. ++..+..|..++...| ++++|.+.|++..+.|.. .++..|...|...+..+
T Consensus 55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~ 126 (452)
T 3e4b_A 55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNV 126 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCH
Confidence 4555555444422 3445555666444444 566777777777766532 25666666666554433
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC---CHH
Q 007543 191 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK----EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG---GYE 263 (599)
Q Consensus 191 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 263 (599)
++.+.+.+....| +......+...|...+.++ .+..+++.... + .|+ .+..|...|.+.| +.+
T Consensus 127 ~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----~-~~~--a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 127 NAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----T-TDI--CYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp CHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----T-CTT--HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----C-CHH--HHHHHHHHHHHcCCcccHH
Confidence 3344444443333 2334455555666666333 33333443321 1 222 6666777777777 677
Q ss_pred HHHHHHHHHHHcCCCCCH--HHHHHHhcc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHH
Q 007543 264 KARKLFALMAERGVQQST--VTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINA-Y--GKARREEEALA 334 (599)
Q Consensus 264 ~A~~~~~~m~~~g~~~~~--~~~~~ll~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~ 334 (599)
+|++.|++..+.|..... .....+... ..++++|...|+... .| +...+..|... | ...+++++|+.
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~ 272 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMK 272 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 777777777766643333 112222221 246677777777766 33 44455555555 3 34667777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 007543 335 VFEEMLDAGVRPTHKAYNILLDAFAISG-----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKF 405 (599)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 405 (599)
.|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..+...|.. ..+.++|...
T Consensus 273 ~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 273 YLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 777776654 5556666666665 44 7777777777665 32 55566666655555 2377777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
|++..+.| +......|...|.. ..+.++|...|+...+.|
T Consensus 345 ~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 345 LLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 77776655 22334455555543 346666777666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.9e-12 Score=124.03 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKM 248 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~ 248 (599)
.+......+...|++++|+..|+++.+..+. + ...+..+...+...|++++|.+.+++.++... .+ .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444455555666666666666666554322 2 23455556666666666666666665543100 00 0122456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 007543 249 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALLINAYGKAR 327 (599)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g 327 (599)
+..+...|...|++++|...+.+..+. .. +.+. .....++..+...|...|
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SR---ELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH-------------------------HH---HhcCchHHHHHHHHHHHHHHHcC
Confidence 777888888888888888888776542 00 0000 001335667777777778
Q ss_pred C--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC
Q 007543 328 R--------------------EEEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SP 381 (599)
Q Consensus 328 ~--------------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p 381 (599)
+ +++|...+++.... +. .....++..+...|...|++++|...+++..+... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 7 78888777765432 10 11123566677777778888888877776654210 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C
Q 007543 382 D----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----G 448 (599)
Q Consensus 382 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 448 (599)
+ ..++..+...+...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 22556666666777777777777766543210 011 345566666666677777777666665531 1
Q ss_pred CCc-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 449 IKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 449 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
-.+ ...++..+...+.+.|++++|...++++.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 011 123555666666666666666666666655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-11 Score=108.21 Aligned_cols=172 Identities=16% Similarity=0.097 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+..+|..+...|.+.|++++|+..|++.++.. +-+..++..+...|.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56788889999999999999999999988875 5677888889999999999999999998887653 446677777778
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
.+...++++.|...+.+..+.. +-+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999998887754 3467788888889999999999999999888653 3457788888899999999999
Q ss_pred HHHHHHHHHhCCCCCCHH
Q 007543 472 AVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~ 489 (599)
|++.|++..+ +.|+..
T Consensus 160 A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHh--CCccCH
Confidence 9999998887 456543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.1e-12 Score=123.93 Aligned_cols=278 Identities=16% Similarity=0.086 Sum_probs=204.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALT 210 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t 210 (599)
.+......+...|++++|...|+++.+.... + ...|..+...|...|++++|++.+++.... +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445677888999999999999999886422 3 467888999999999999999999887542 1111 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCC--------------------HHHHH
Q 007543 211 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGG--------------------YEKAR 266 (599)
Q Consensus 211 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 266 (599)
+..+...+...|++++|...+++.++.... .++ ..++..+...|...|+ +++|.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRE--LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 778888999999999999999988753111 122 3477888889999999 77777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 007543 267 KLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-R 345 (599)
Q Consensus 267 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 345 (599)
..+++... +..... .......++..+...|...|++++|...+++..+... .
T Consensus 164 ~~~~~a~~-------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 216 (338)
T 3ro2_A 164 DLYEENLS-------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 216 (338)
T ss_dssp HHHHHHHH-------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 77765543 111110 0011234678888899999999999999998764310 1
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---
Q 007543 346 PT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--- 413 (599)
Q Consensus 346 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 413 (599)
++ ..++..+...+...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 217 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 12 23778888999999999999999998764310 112 4577888889999999999999999876431
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 414 --FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 414 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
......++..+...|.+.|++++|.+.+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112457788999999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.6e-11 Score=126.10 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++.++.. +.+...|..+...|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555666555442 34778899999999999999 99999999998875 5568899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 007543 373 CMRRDRCSPDICSYTTMLSAYVNA---------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------NNLE 435 (599)
Q Consensus 373 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 435 (599)
+..+. .|+...+..+...|... |++++|+..|++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 57788899999999999 99999999999998865 34788999999999998 9999
Q ss_pred HHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHH
Q 007543 436 KMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 512 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 512 (599)
+|.+.|++..+.. + -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++...|++++|...+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999753 2 378899999999999999999999999998842 3445678888889999999999987665
Q ss_pred hc
Q 007543 513 NF 514 (599)
Q Consensus 513 ~~ 514 (599)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 54
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.8e-10 Score=110.29 Aligned_cols=217 Identities=13% Similarity=0.110 Sum_probs=158.3
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-------CCH-------HHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------GGY-------EKARKLFALMAERGVQQSTVTYNSLMSF 290 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 290 (599)
++|..+|++++... +.+...|..++..+... |++ ++|..+|++.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------------ 90 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------------ 90 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------------
Confidence 57777888887643 56777888777776543 553 4455544444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHH
Q 007543 291 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HK-AYNILLDAFAISGMVDQAR 368 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~ 368 (599)
.+.-.+-+...|..++..+.+.|++++|..+|++.++. .|+ .. .|..++..+.+.|++++|.
T Consensus 91 --------------l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 91 --------------ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp --------------HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred --------------HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 43111235567888899999999999999999999875 343 33 7888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYV-NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (599)
.+|++..+.. +++...|........ ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++....
T Consensus 155 ~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999988753 234444543333322 3688999999998887653 336778888888888889999999999988875
Q ss_pred C-CCc--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 448 G-IKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 448 ~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
. +.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 454 356888888888888999999888888876
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.7e-10 Score=110.38 Aligned_cols=218 Identities=13% Similarity=0.115 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 007543 119 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYG-------KQGDF-------NKAEKVLSFMNK-KGYAPSVVSHTALMEAY 183 (599)
Q Consensus 119 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~g~~p~~~~~~~li~~~ 183 (599)
++|..+++.+.... +.++..|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45566666666654 466777777777665 35775 788888888887 32 23566888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH-HcCC
Q 007543 184 GRGGRYKNAEAIFRRMQSSGPRPSAL-TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK-KAGG 261 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~ 261 (599)
.+.|++++|.++|++..+..+. +.. .|..+...+.+.|++++|..+|+++++.. +.+...|...+.... ..|+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----RTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST----TCCTHHHHHHHHHHHHTSCC
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHcCC
Confidence 8888888888888888774322 232 67777777888888888888888887532 233444443333322 2466
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++.+.
T Consensus 185 ~~~A~~~~~~al~~---------------------------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 KSVAFKIFELGLKK---------------------------------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHH---------------------------------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------------------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666665542 123566677777777888888888888888877
Q ss_pred CC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 342 AG-VRP--THKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 342 ~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
.. ++| ....|..++..+.+.|+.+.|..+++++.+.
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 343 4567777777777788888888887777654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=104.13 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=57.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
+..|..|...|.+.|++++|.+.|++..+... -+..+|..+...|.+.|++++|+..+.+.....+. +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 34444444445555555555555544444321 13444444444444444444444444444433222 33334444444
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
+...++++.|.+.+.+..... +.+...+..+...|.+.|++++|++.|++..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 444444444444444443321 2233444444444444444444444444433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-11 Score=125.48 Aligned_cols=215 Identities=11% Similarity=0.015 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 118 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF-NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIF 196 (599)
Q Consensus 118 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 196 (599)
.+.+.+.++...... +.+...+..+...|...|++ ++|++.|++..+... .+..+|..+...|.+.|++++|++.|
T Consensus 84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555665554433 45678888899999999999 999999999888642 36889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc--------
Q 007543 197 RRMQSSGPRPSALTYQIILKLFVEA---------NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------- 259 (599)
Q Consensus 197 ~~m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 259 (599)
++..+.. |+...+..+...+... |++++|.+.|+++++.. +.+...|..+...|...
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD----VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 9998854 6678888888888888 99999999999998753 55678888888888887
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 260 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 339 (599)
Q Consensus 260 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (599)
|++++|+..|++..+.. |. ...+...|..+..+|...|++++|...|++.
T Consensus 235 g~~~~A~~~~~~al~~~--p~----------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD--RK----------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp HHHHHHHHHHHHHHHHC--GG----------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC--CC----------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777666531 00 0026667777888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 340 LDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
.+.. +.+...+..+...+...|++++|+..+.
T Consensus 285 l~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 285 AALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7664 4455566666677777776666665443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.3e-11 Score=119.80 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=103.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCCHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPDQKMFH 250 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~ 250 (599)
....+...|++++|++.|++..+. +..+ ...++..+...|...|++++|...+.+.++..... .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555667778888888888877653 1111 23466777777778888888888877776531111 011235667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCH
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARRE 329 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~ 329 (599)
.+...|...|++++|+..|.+..+. .. +.+.. ....++..+...|...|++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~-------------------------~~---~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM-------------------------AE---AEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH-------------------------HH---HcCChHHHHHHHHHHHHHHHHCCCH
Confidence 7777777788888887777766542 11 10000 0123566677777777777
Q ss_pred HHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 330 EEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 330 ~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
++|+..|++..+. +. +....++..+...|.+.|++++|...+++..+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776551 21 22344566666677777777777776666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=123.76 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc----CCC
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE----KSP 241 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~ 241 (599)
..+|..+...|...|++++|+.+|+++.+. .......++..+...|...|++++|...++++++.. ...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 334455555555555555555555554431 111223345555555566666666666665554320 011
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007543 242 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 321 (599)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 321 (599)
.+....++..+...|...|++++|...|+++.+. .........+.....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------------------------REKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------------------------HHHhcCCCChHHHHHHHHHHH
Confidence 1233567788888999999999999998877652 111111111123456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 322 AYGKARREEEALAVFEEMLDA------GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
.|...|++++|+.+++++.+. +..| ...++..+...|...|++++|...|+++.+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988764 1122 344677888888889999999988888765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-11 Score=121.51 Aligned_cols=237 Identities=10% Similarity=-0.001 Sum_probs=137.2
Q ss_pred HHhcCChHHHHHHHHHHHhCC--C--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCC---
Q 007543 148 YGKQGDFNKAEKVLSFMNKKG--Y--APSVVSHTALMEA--YGRGGRYKNAE-----------AIFRRMQSSGPRPS--- 207 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g--~--~p~~~~~~~li~~--~~~~g~~~~A~-----------~l~~~m~~~g~~p~--- 207 (599)
+.+.+++++|..+++++.+.- . .++...|..++.. ....+.++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345777888888777765421 1 1223333443332 11223333333 55555543211101
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 208 -ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-PLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 208 -~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
...+......+...|++++|...|++.++.-.. +-.+ ...++..+...|...|++++|...+.+..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------- 172 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 011223556778899999999999999753111 1111 3467888999999999999999999877642
Q ss_pred HHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 007543 285 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT----HKAYNILLDAFA 359 (599)
Q Consensus 285 ~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~ 359 (599)
+...... ......+++.+...|...|++++|+..|++..+... .++ ..++..+...|.
T Consensus 173 ----------------~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 173 ----------------YKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------HHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1110000 001235678888899999999999999988764310 111 135666677777
Q ss_pred HcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 360 ISGMVDQARTVFKCMRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
..|++++|...|++..+. +. +....++..+...|.+.|++++|...+++..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777666541 11 2223445555555555666666665555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-09 Score=107.51 Aligned_cols=276 Identities=9% Similarity=0.006 Sum_probs=179.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHH
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHM 251 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ 251 (599)
.....+...|++++|...+++........+.. ++..+...+...|++++|.+.+++.+......-.+ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556777777777777766543332322 34555566777778888777777766421100011 1234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCC
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ--P-DVVSYALLINAYGKARR 328 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~--~-~~~~~~~li~~~~~~g~ 328 (599)
+...+...|++++|...+++..+. . ...+.. | ....+..+...+...|+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~-------------------------~---~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQL-------------------------I---NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------H---HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------------------------H---HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 778888999999999988877642 1 111111 2 23456677788889999
Q ss_pred HHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH-----HHHHHHHhcCC
Q 007543 329 EEEALAVFEEMLDAGVR----PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYT-----TMLSAYVNASD 398 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~-----~li~~~~~~g~ 398 (599)
+++|...+++....... ....++..+...+...|++++|...+++.......+ +...+. ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 99999999887654321 123567778888889999999999998876531111 111121 23344778899
Q ss_pred HHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcCH-HHHHHHHHHHHhcCCHh
Q 007543 399 MEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPNQ-TIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~ 470 (599)
.++|...+++.......+ ....+..+...+...|++++|...+++... .+..++. ..+..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 999999998887543221 133566778888899999999999988763 2222232 26667778888999999
Q ss_pred HHHHHHHHHHh
Q 007543 471 SAVVWYKEMES 481 (599)
Q Consensus 471 ~A~~~~~~m~~ 481 (599)
+|...+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=118.29 Aligned_cols=249 Identities=12% Similarity=0.139 Sum_probs=158.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007543 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK----SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 282 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 282 (599)
+..++..+...+...|++++|..+|+++++... ...+....++..+...|...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------- 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------
Confidence 456788889999999999999999999986200 012334577888999999999999999999887652
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 007543 283 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILL 355 (599)
Q Consensus 283 ~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~li 355 (599)
+........+....++..+...|...|++++|...++++.+. +- +.....+..+.
T Consensus 99 ------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 99 ------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp ------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 222211111223467888999999999999999999998764 21 22345677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------CCCC----
Q 007543 356 DAFAISGMVDQARTVFKCMRRD------RCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDG-------FVPN---- 417 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p~---- 417 (599)
..|...|++++|..+|+++.+. +..| ...++..+...|...|++++|...++++.+.. ..+.
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 8889999999999999887664 1122 23567777788888888888888888876421 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 418 ---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 418 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...+..+...+...+.+.++...+....... +.+..+|..+..+|.+.|++++|.+++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222223333444444555555554321 22344666677777777777777777766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-09 Score=105.18 Aligned_cols=304 Identities=9% Similarity=0.034 Sum_probs=205.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHH
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV----SHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSA----LTYQ 212 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~ 212 (599)
..+...+...|++++|...+++........+.. +++.+...+...|++++|.+.+++...... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 345566778999999999999987764222332 567778888999999999999998765321 1122 3356
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccC-CCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEK-SPLK--P-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 288 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 288 (599)
.+...+...|++++|...+++.++... .+.. | ...++..+...+...|++++|...+++........
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------- 168 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--------- 168 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---------
Confidence 677888999999999999998875321 1111 2 24566778889999999999999998877542110
Q ss_pred cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHHcC
Q 007543 289 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-T-HKAYN----ILLDAFAISG 362 (599)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~-~~~~~----~li~~~~~~g 362 (599)
+......++..+...+...|++++|...+++.....-.+ . ..... ..+..+...|
T Consensus 169 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 229 (373)
T 1hz4_A 169 -------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 229 (373)
T ss_dssp -------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred -------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCC
Confidence 111123567778888999999999999999886532111 1 11111 2334577899
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCH-HHHHHHHHHHHhcCCH
Q 007543 363 MVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV-ITYGTLIKGYAKVNNL 434 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~ 434 (599)
++++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. .++..+..++...|+.
T Consensus 230 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 9999999998876543211 1335667778899999999999999987542 222222 3667778888999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
++|...+++..... +. ...+..+...| +....+++.+..
T Consensus 310 ~~A~~~l~~al~~~--~~----~g~~~~~~~~g--~~~~~ll~~~~~ 348 (373)
T 1hz4_A 310 SDAQRVLLDALKLA--NR----TGFISHFVIEG--EAMAQQLRQLIQ 348 (373)
T ss_dssp HHHHHHHHHHHHHH--HH----HCCCHHHHTTH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cc----ccHHHHHHHcc--HHHHHHHHHHHh
Confidence 99999999887421 00 11223333444 455566666655
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-10 Score=98.82 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555554432 3344455555555555555555555555554431 223444445555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555544432 2244444455555555555555555555544331 2234444445555555555555555
Q ss_pred HHHHHH
Q 007543 475 WYKEME 480 (599)
Q Consensus 475 ~~~~m~ 480 (599)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-09 Score=96.07 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 221 (599)
..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|.+.++++.+..+ .+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 334444444444444444444443332 11334444444444444444444444444433211 1333333333344444
Q ss_pred CCHHHHHHHHHHhH
Q 007543 222 NKFKEAEEVFMTLL 235 (599)
Q Consensus 222 g~~~~A~~~~~~~~ 235 (599)
|++++|.+.++++.
T Consensus 90 ~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 90 QKYDLAVPLLIKVA 103 (186)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444333
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-09 Score=106.94 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=160.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 290 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 290 (599)
.....+...|++++|...|+++++.... ..+....++..+...|...|++++|...+.+..+.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------- 170 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------- 170 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------
Confidence 3445567889999999999998753111 00112457888999999999999999998877642
Q ss_pred cCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCC
Q 007543 291 ETNYKEVSKIYDQMQRAGL-Q-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGM 363 (599)
Q Consensus 291 ~~~~~~a~~~~~~m~~~g~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 363 (599)
+.. .+. . ....+++.+...|...|++++|...|++..+. +-. ....++..+...|...|+
T Consensus 171 ----------~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 171 ----------YQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----------HHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 111 000 0 12456788899999999999999999887653 111 113467778888888999
Q ss_pred HHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCHHHHHHHHHHHHhcCC-
Q 007543 364 VDQARTVFKCMRR-----DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNVITYGTLIKGYAKVNN- 433 (599)
Q Consensus 364 ~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~- 433 (599)
+++|...|++..+ .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...|...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 9999988888766 32 223566777778888888888888888877642 112223345555566666677
Q ss_pred --HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 434 --LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 434 --~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+++|...+++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666652 22333 33566777788888888888888877754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-08 Score=102.01 Aligned_cols=232 Identities=9% Similarity=0.021 Sum_probs=170.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
....+...|++++|+..|++..+.... ++. .....++..+...|...|+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~a~~~~~lg~~y~~~~~~~ 158 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------IEKAEFHFKVAEAYYHMKQTH 158 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------HHHHHHHHHHHHHHHHcCCcH
Confidence 445566778888888888777643100 000 012356788899999999999
Q ss_pred HHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 007543 331 EALAVFEEMLDAGV-RP-----THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLSAYVNASDM 399 (599)
Q Consensus 331 ~A~~~~~~m~~~g~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~ 399 (599)
+|...+.+..+... .+ ...+++.+...|...|++++|...|++..+. +..+ ...++..+...|...|++
T Consensus 159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 99999998865311 11 2447888999999999999999999987653 1111 235678888899999999
Q ss_pred HHHHHHHHHHhh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcC-HHHHHHHHHHHHhcCC--
Q 007543 400 EGAEKFFRRLKQ-----DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI---KPN-QTIFTTIMDAYGKNKD-- 468 (599)
Q Consensus 400 ~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~-- 468 (599)
++|...+++..+ .. +....++..+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999876 43 33477889999999999999999999999885311 122 3456777777788888
Q ss_pred -HhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 469 -FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 469 -~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
+.+|+.++++. +..|+. ..+..+...+...|++++|...+++..
T Consensus 318 ~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 318 KIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777763 233333 456678889999999999999998864
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-07 Score=102.10 Aligned_cols=391 Identities=10% Similarity=0.084 Sum_probs=277.1
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR---YKNAEAIFR 197 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~l~~ 197 (599)
....++...... +.+...|..++..+.+.+.++.|..+|+.+... ++.+...|..-+..-.+.|. ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344455555554 578899999999999999999999999999987 56688899999999999999 999999999
Q ss_pred HHHhCCC-CCCHHHHHHHHHHHHHcCCH--------HHHHHHHHHhHhccCCCC-CC-CHHHHHHHHHHHH---------
Q 007543 198 RMQSSGP-RPSALTYQIILKLFVEANKF--------KEAEEVFMTLLDEEKSPL-KP-DQKMFHMMIYMYK--------- 257 (599)
Q Consensus 198 ~m~~~g~-~p~~~t~~~ll~~~~~~g~~--------~~A~~~~~~~~~~~~~~~-~~-~~~~~~~li~~~~--------- 257 (599)
+.+...+ .|+...|...+....+.++. +...++|+.++.. .|. .+ ....|...+....
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~--vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK--CAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--TTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--hCcccccchHHHHHHHHHHHhccccCcHH
Confidence 9988642 47888999999888887775 3345788888763 344 33 4678888887654
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cC-------------CHHHHHHHHHHHHHc--CCC---------
Q 007543 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ET-------------NYKEVSKIYDQMQRA--GLQ--------- 310 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~-------------~~~~a~~~~~~m~~~--g~~--------- 310 (599)
..++++.+.++|+.........-..+|...... .+ .+..|...+.++... ++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 344678899999998864222223444433322 11 123344444443321 111
Q ss_pred ------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-
Q 007543 311 ------P-----D---VVSYALLINAYGKAR-------REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR- 368 (599)
Q Consensus 311 ------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~- 368 (599)
| + ...|...+..--..+ ..+.+..+|++.+..- +.+...|...+..+...|+.++|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 1 1 134555554433322 1344567888887763 668889999999889999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---------CCC------------HHHHHHHHHH
Q 007543 369 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF---------VPN------------VITYGTLIKG 427 (599)
Q Consensus 369 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~~~~~li~~ 427 (599)
.+|++.... ++.+...|...+....+.|++++|.++|+++.+... .|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999998864 455677788888899999999999999999876310 132 3467788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 506 (599)
..+.|..+.|.++|.+..+.-..+....|...+..-.+. ++.+.|.++|+..++. ++-+...|..++......|+.+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 888999999999999998751122344554444333444 4599999999999875 45566777788888889999999
Q ss_pred HHHHHHhccCCCC
Q 007543 507 ANELLGNFNHPNN 519 (599)
Q Consensus 507 A~~~~~~~~~~~~ 519 (599)
|+.++++.....+
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999765554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-09 Score=98.74 Aligned_cols=152 Identities=13% Similarity=-0.003 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
|...+......+.+.|++++|+..|++.++...+++...+..+..++...|++++|+..|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666677777777777777777665422566666666667777777777777777766542 224456666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 461 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 461 (599)
.|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777766543 2233 34666666666777777777777776643 343 345555555
Q ss_pred HHHhcC
Q 007543 462 AYGKNK 467 (599)
Q Consensus 462 ~~~~~g 467 (599)
++...|
T Consensus 162 ~~~~~~ 167 (228)
T 4i17_A 162 LFYNNG 167 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-09 Score=118.08 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...|+.|...|.+.|++++|+..|++.++.. +-+..+|..+...|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45689999999999999999999999999875 5568899999999999999999999999998763 346789999999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHh
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFD 470 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~ 470 (599)
+|...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+. .|+ ...|..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998865 337889999999999999999999999999975 454 779999999999999999
Q ss_pred HHHHHHHHHHh
Q 007543 471 SAVVWYKEMES 481 (599)
Q Consensus 471 ~A~~~~~~m~~ 481 (599)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-09 Score=118.38 Aligned_cols=166 Identities=11% Similarity=0.072 Sum_probs=111.8
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 216 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 216 (599)
+...|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|++.|++.++..+. +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345677777777777777777777777776532 25667777777777777777777777777665433 5667777777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
+|.+.|++++|++.|++.++.+ +.+...|+.+...|.+.|++++|++.|++..+..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-------------------- 141 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-------------------- 141 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence 7777777777777777776543 4456677777777777777777777776665531
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+-+...+..+...|...|++++|.+.+++..+
T Consensus 142 -------------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 142 -------------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -------------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -------------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 12445666667777777777777666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-09 Score=96.94 Aligned_cols=135 Identities=12% Similarity=-0.011 Sum_probs=113.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.++..+..+...|.+.|++++|.+.|++..+...+++...|..+..++...|++++|++.|++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888899999999999999999999988764468888888999999999999999999999886544 667888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ-------KMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+...|++++|.+.|++.++.. +.+. .+|..+...+...|++++|+..|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999999999999998753 3445 45777888888889999999888888764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-09 Score=101.94 Aligned_cols=194 Identities=13% Similarity=-0.002 Sum_probs=117.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 007543 322 AYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLS 391 (599)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~ 391 (599)
.|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666665432 21111 345666666777777777777766665432 1000 1245667777
Q ss_pred HHHhc-CCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 007543 392 AYVNA-SDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTTI 459 (599)
Q Consensus 392 ~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l 459 (599)
.|... |++++|+..|++..+.... .+ ..++..+...|.+.|++++|...|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 77775 8888888888877643110 01 346777888888888888888888888764322111 156667
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--hcCcHHHHHHHHHhccCC
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESCGFPPDQK------AKNILLSLAK--TADERNEANELLGNFNHP 517 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~g~~~~A~~~~~~~~~~ 517 (599)
..++...|++++|...+++..+ +.|+.. .+..++.++. ..+++++|...++++...
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 7778888888888888888776 444422 2333444453 456788888888776443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=6.7e-10 Score=106.31 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=147.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTVFK 372 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (599)
++........+....++..+...|...|++++|+..+++..+. +- +....++..+...|...|++++|...|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 30 DLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4444443322234567888999999999999999999998754 21 2234578889999999999999999999
Q ss_pred HHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 007543 373 CMRRD------R-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMM 438 (599)
Q Consensus 373 ~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~ 438 (599)
+..+. . .+....++..+...|...|++++|...++++.+. + .+....++..+...|...|++++|.
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88764 1 1223567888888999999999999999988754 1 1223567888999999999999999
Q ss_pred HHHHHHHHC-------CCCcC-HHHHHHHHHHHHhcCCHhHHHH------HHHHHHhCCCCCC-HHHHHHHHHHHhhcCc
Q 007543 439 EIYDKMRVN-------GIKPN-QTIFTTIMDAYGKNKDFDSAVV------WYKEMESCGFPPD-QKAKNILLSLAKTADE 503 (599)
Q Consensus 439 ~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 503 (599)
+.+++..+. ...+. ...|..+.......+....+.. .++.... ..|+ ..++..+..++...|+
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCC
Confidence 999988752 11222 2244444444444333333222 2222111 1222 3457778889999999
Q ss_pred HHHHHHHHHhccCC
Q 007543 504 RNEANELLGNFNHP 517 (599)
Q Consensus 504 ~~~A~~~~~~~~~~ 517 (599)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999886543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-09 Score=103.46 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEE----KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 283 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 283 (599)
..++..+...|...|++++|...++++++.. ....+....++..+...|...|++++|...|.+..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 114 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------- 114 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------
Confidence 4455566666666666666666666665421 0111234567888889999999999999998877642
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHH
Q 007543 284 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------G-VRPTHKAYNILLD 356 (599)
Q Consensus 284 ~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~ 356 (599)
++.......+....++..+...|...|++++|...+++..+. + .+....++..+..
T Consensus 115 -----------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 115 -----------------REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp -----------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred -----------------HHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 222211111123567888899999999999999999998764 1 1223457888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCCCHHHHH
Q 007543 357 AFAISGMVDQARTVFKCMRRD-------RCSPD-ICSYTTMLSAYVNASD------MEGAEKFFRRLKQDGFVPNVITYG 422 (599)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~ 422 (599)
.|...|++++|...|++..+. ...+. ...|..+...+...+. +..+...++..... .+....++.
T Consensus 178 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 256 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLR 256 (283)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 999999999999999988753 11222 2233333333333222 33333333332221 123456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
.+...|.+.|++++|.++|++..+
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-08 Score=83.47 Aligned_cols=130 Identities=22% Similarity=0.286 Sum_probs=111.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
.+..+...|...|++++|.++|+++.+.+ +.+...|..+...+...|++++|..+|+++...++ .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 46678889999999999999999988764 33788899999999999999999999999987653 36778888899999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..|++++|.+.++++++.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998643 456788889999999999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-08 Score=83.43 Aligned_cols=128 Identities=17% Similarity=0.252 Sum_probs=63.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444445555555555555444332 2234444444445555555555555555544432 2244445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 22344555555555555555555555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-07 Score=87.45 Aligned_cols=170 Identities=12% Similarity=0.068 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-----DIC 384 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~ 384 (599)
++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 3444444556666666666666666666654432 124445556666666666666666666666553 34 234
Q ss_pred HHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC---Cc-
Q 007543 385 SYTTMLSA--YVNAS--DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GI---KP- 451 (599)
Q Consensus 385 ~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~---~p- 451 (599)
+...++.+ ....| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .|
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 44444444 22223 666666666666543 344333333444666667777777766654421 00 12
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 452 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
|..+...+|......|+ +|.+++.++.+ ..|+.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCC
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCC
Confidence 34455444444444555 66666666666 34444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=4e-08 Score=89.69 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI----------------LLDAFAISGMVDQARTVFKCMRRDR 378 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~~ 378 (599)
.+......+.+.|++++|+..|++.++.. +.+...|.. +...|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445566778888889998888887763 223445555 8888999999999999999888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCcCHHHH
Q 007543 379 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN--LEKMMEIYDKMRVNGIKPNQTIF 456 (599)
Q Consensus 379 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~ 456 (599)
+.+...+..+...+...|++++|...|++..+.. +-+..++..+...|...|. .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4467888888999999999999999999988765 3477888888888876653 3445556655541 22223334
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 496 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 496 (599)
.....++...|++++|+..|++.++ +.|+......+..
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4455666778999999999999988 6788765554443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3e-08 Score=94.01 Aligned_cols=172 Identities=15% Similarity=0.104 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHH
Q 007543 311 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SP-DICS 385 (599)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~ 385 (599)
.+...+-.+...+.+.|++++|+..|+++++.. +.+ ...+..+..+|.+.|++++|...|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356667778888889999999999999998764 333 56788888899999999999999998887521 12 2456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 007543 386 YTTMLSAYVN--------ASDMEGAEKFFRRLKQDGFVPNVITY-----------------GTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 386 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~~ 440 (599)
+..+..++.. .|++++|...|+++.+.... +.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7777778888 89999999999998865321 22222 4568889999999999999
Q ss_pred HHHHHHCCCCcC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCH
Q 007543 441 YDKMRVNGIKPN----QTIFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 441 ~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
|+++.+. .|+ ...+..+..+|... |++++|...++++.+ ..|+.
T Consensus 171 ~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 171 YEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 9998864 233 34677777888766 889999999999987 34554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-08 Score=92.57 Aligned_cols=167 Identities=7% Similarity=0.018 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCC-CC---
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT----HKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCS-PD--- 382 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~-p~--- 382 (599)
..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 457888999999999999999999988653211 11 35788899999996 9999999999987753110 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-
Q 007543 383 -ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT- 454 (599)
Q Consensus 383 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~- 454 (599)
..++..+...+...|++++|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 356888899999999999999999999875433221 25778888999999999999999998743 34321
Q ss_pred -----HHHHHHHHHH--hcCCHhHHHHHHHHHHh
Q 007543 455 -----IFTTIMDAYG--KNKDFDSAVVWYKEMES 481 (599)
Q Consensus 455 -----~~~~li~~~~--~~g~~~~A~~~~~~m~~ 481 (599)
.+..++.++. ..+++++|+..|+++..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3445566664 45778888888877754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-07 Score=90.08 Aligned_cols=172 Identities=15% Similarity=0.129 Sum_probs=117.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS-ALT 210 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t 210 (599)
.+...+..+...+.+.|++++|...|+++.+... .+ ..++..+..+|.+.|++++|+..|++..+..+. |. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4566677788888888889999988888887632 13 677888888888888999998888888875432 22 445
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHhHhccCCCCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 007543 211 YQIILKLFVE--------ANKFKEAEEVFMTLLDEEKSPLKPDQKMF-----------------HMMIYMYKKAGGYEKA 265 (599)
Q Consensus 211 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~A 265 (599)
+..+..++.. .|++++|...|+++++.. +.+.... ..+...|.+.|++++|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 6677777777 888888888888888643 2122222 3445566666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHH
Q 007543 266 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----------RREEEALAV 335 (599)
Q Consensus 266 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------g~~~~A~~~ 335 (599)
+..|+++.+.. |+ .......+..+..+|... |++++|...
T Consensus 168 ~~~~~~~l~~~--p~----------------------------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~ 217 (261)
T 3qky_A 168 AVTYEAVFDAY--PD----------------------------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL 217 (261)
T ss_dssp HHHHHHHHHHC--TT----------------------------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CC----------------------------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence 66666665431 10 001234566666777655 788889988
Q ss_pred HHHHHHC
Q 007543 336 FEEMLDA 342 (599)
Q Consensus 336 ~~~m~~~ 342 (599)
|+++++.
T Consensus 218 ~~~~~~~ 224 (261)
T 3qky_A 218 YERLLQI 224 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888776
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-06 Score=87.84 Aligned_cols=341 Identities=10% Similarity=0.001 Sum_probs=209.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH----HcCCH
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSS-GPRP-SALTYQIILKLFV----EANKF 224 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-~~~t~~~ll~~~~----~~g~~ 224 (599)
|+++.+..+|++.... .|++..|..-+.-..+.+. .+....+|+..+.. |..| +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6788888888887774 4688888877777766663 34556677766543 4333 5566666665543 34567
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-------------AGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 291 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 291 (599)
+.+.++|++++.. +...-...|......-.. .+.+..|..+++.+...-...+...|...+...
T Consensus 106 ~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7788888888742 111112223322221111 123334455554443210001333555554431
Q ss_pred -CC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007543 292 -TN---------YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 361 (599)
Q Consensus 292 -~~---------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (599)
++ .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.+.. +.+...|.. |+..
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhh
Confidence 11 345678899988764 446788888888889999999999999999987 444333332 2222
Q ss_pred CCHHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 007543 362 GMVDQARTVFKCMRRDR---------CSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 429 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 429 (599)
...++. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|++. +.. ..+...|......-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111111 22222110 001 1245666777777788899999999999 322 234555543333333
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHH
Q 007543 430 KVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 508 (599)
Q Consensus 430 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 508 (599)
+.+ +.+.|..+|+...+.- +-+...|..+++...+.|+.+.|..+|+++. .....|...+..-...|+.+.++
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 334 6999999999998642 2235667778888889999999999999972 24677888888888889999999
Q ss_pred HHHHhcc
Q 007543 509 ELLGNFN 515 (599)
Q Consensus 509 ~~~~~~~ 515 (599)
.++++..
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-08 Score=88.23 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA----------------LMEAYGRGGRYKNAEAIFRRMQSSGP 204 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~ 204 (599)
+......+.+.|++++|...|++..+... .+...|.. +..+|.+.|++++|+..|++..+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33445566677777777777777766521 13344444 66666666666666666666665433
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 205 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 205 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
. +...+..+...+...|++++|...|+++++.+ +.+..++..+...|...|
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHh
Confidence 2 55566666666666666666666666666543 344555655555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-07 Score=83.71 Aligned_cols=176 Identities=17% Similarity=0.074 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG----MVDQARTVF 371 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 371 (599)
+|.+.|++..+.| +...+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 67788888888989999999999999998865 66777788888877 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAK----VNNLEKMMEIYD 442 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 442 (599)
++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|.+.|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67788888888877 78999999999998887521 126788888888888 788999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhCC
Q 007543 443 KMRVNGIKPNQTIFTTIMDAYGKN-K-----DFDSAVVWYKEMESCG 483 (599)
Q Consensus 443 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 483 (599)
+..+. ..+...+..|...|... | ++++|..++++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98876 23445666677777543 3 8999999999988866
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.7e-08 Score=107.12 Aligned_cols=184 Identities=11% Similarity=-0.029 Sum_probs=135.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007543 324 GKARREEEALAVFEEML--------DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 395 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 395 (599)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888888888887 432 4456677888888888888888888888887653 3466778888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH
Q 007543 396 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 475 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (599)
.|++++|...|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888887764 2366778888888888888888 88888887643 33466888888888888888888888
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHhhcC--------cHHHHHHHHHhc
Q 007543 476 YKEMESCGFPPDQ-KAKNILLSLAKTAD--------ERNEANELLGNF 514 (599)
Q Consensus 476 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g--------~~~~A~~~~~~~ 514 (599)
|+++.+ +.|+. ..+..+..++...+ ++++|.+.+..+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888877 45664 45656666655433 355666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=90.06 Aligned_cols=181 Identities=11% Similarity=0.066 Sum_probs=137.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888887765 56777777888999999999999999999876543 2366778888999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 411 QDGFVP-----NVITYGTLIKGY--AKVN--NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 411 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 356666666663 3334 899999999999764 46644444455589999999999999997754
Q ss_pred C-----CC----CCCHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCC
Q 007543 482 C-----GF----PPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 519 (599)
Q Consensus 482 ~-----g~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 519 (599)
. +. +-+..++..++......|+ +|.+++.++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 2 11 3345666567666666787 88999998865554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-06 Score=90.35 Aligned_cols=335 Identities=13% Similarity=0.066 Sum_probs=208.9
Q ss_pred hcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH
Q 007543 150 KQG-DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEA 227 (599)
Q Consensus 150 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~A 227 (599)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.... .|+...|...++...+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 233 8899999999999874 5799999999988877774 4567
Q ss_pred HHHHHHhHhccCCCC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc------------
Q 007543 228 EEVFMTLLDEEKSPL-KPDQKMFHMMIYMYK----KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF------------ 290 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~------------ 290 (599)
..+|+.++.. .|. ..+...|...+..+. ..++.+.+.++|+.........-...|......
T Consensus 68 ~~~fe~al~~--vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQ--FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHH--STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 7888888753 222 446788888887764 356788999999999874222112233322221
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007543 291 ----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR--R-----EEEALAVFEEMLDAGVRPTHKAYNILLDAFA 359 (599)
Q Consensus 291 ----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (599)
...+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1122334444444443110113345655554433221 1 345778999988764 667888988888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhhCC-----C---CCCHHHHHHHHHHHHh
Q 007543 360 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA-EKFFRRLKQDG-----F---VPNVITYGTLIKGYAK 430 (599)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~-----~---~p~~~~~~~li~~~~~ 430 (599)
+.|+.++|..+|++.... +.+...|. .|....+.++. ..+.+...... . ......|...+..+.+
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 999999999999999987 43433332 22222111111 11222111000 0 1112456667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 509 (599)
.+.++.|.++|++. ... ..+..+|......-...+ +.+.|..+|+...+. .+-+...|...++...+.|+.+.|+.
T Consensus 299 ~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88999999999999 321 234555543333223333 699999999999874 23345566777888889999999999
Q ss_pred HHHhc
Q 007543 510 LLGNF 514 (599)
Q Consensus 510 ~~~~~ 514 (599)
++++.
T Consensus 376 l~er~ 380 (493)
T 2uy1_A 376 LFKRL 380 (493)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 99997
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-08 Score=105.06 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=70.1
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 184 GRGGRYKNAEAIFRRMQ--------SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 184 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
...|++++|++.|++.. +.. ..+...+..+..++...|++++|.+.|+++++.+ +.+...|..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV----GWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC----cchHHHHHHHHHH
Confidence 34445555555555544 221 1133444444455555555555555555554432 3344455555555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 256 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 335 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (599)
|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++ +..
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~---------------------------------P~~~~~~~~lg~~~~~~g~~~~-~~~ 522 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTF---------------------------------PGELAPKLALAATAELAGNTDE-HKF 522 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS---------------------------------TTCSHHHHHHHHHHHHHTCCCT-TCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcCChHH-HHH
Confidence 555555555555555544321 1123334444444444454444 444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
|++.++.+ +.+...|..+..+|.+.|++++|...|++..
T Consensus 523 ~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 523 YQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44444432 3334444444445555555555555554444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-06 Score=79.99 Aligned_cols=219 Identities=5% Similarity=-0.014 Sum_probs=132.8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---C
Q 007543 152 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG--RYKNAEAIFRRMQSSGPRPSALTYQIILKLF----VEA---N 222 (599)
Q Consensus 152 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~---g 222 (599)
...++|+++++.+...... +..+|+.--..+...| ++++++++++.+....++ +..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3346888888888876433 6777888888888888 888999988888886655 455555544444 444 6
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKI 300 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~ 300 (599)
++++++++++.+++.+ +.+..+|+.-...+.+.|.++ ++++.++++.+..
T Consensus 125 ~~~~EL~~~~~~l~~~----pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------------------------ 176 (306)
T 3dra_A 125 DPYREFDILEAMLSSD----PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------------------------ 176 (306)
T ss_dssp CTHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------------------------
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------------------------
Confidence 7888888888888754 667788887777777777776 7777777776542
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 007543 301 YDQMQRAGLQPDVVSYALLINAYGKARR------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ-ARTVFKC 373 (599)
Q Consensus 301 ~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 373 (599)
..|...|+.-...+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+... +..+..+
T Consensus 177 ---------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 177 ---------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp ---------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred ---------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 2244445444444444443 566666666666554 4555666666555555554322 2233333
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 374 MRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 374 m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
+...+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 32211 12233444444444444444444444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-07 Score=81.64 Aligned_cols=178 Identities=12% Similarity=0.075 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 007543 330 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS----DMEGAEKF 405 (599)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~ 405 (599)
.+|++.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 78888899999999999999999999998875 77888888888887 6 89999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGK----NKDFDSAVVWY 476 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 476 (599)
|++..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 77788888888887 88999999999999876521 126788888888888 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhc-C-----cHHHHHHHHHhccCCCC
Q 007543 477 KEMESCGFPPDQKAKNILLSLAKTA-D-----ERNEANELLGNFNHPNN 519 (599)
Q Consensus 477 ~~m~~~g~~p~~~~~~~ll~~~~~~-g-----~~~~A~~~~~~~~~~~~ 519 (599)
++..+. +.+...+..|...|... | +.++|..++++..+.+.
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999885 34555677777776543 3 89999999998765554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-07 Score=89.44 Aligned_cols=167 Identities=8% Similarity=0.013 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 310 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 389 (599)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 389 (599)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345567777788888888888888888887764 556778888888888888888888888887654 3454433333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcC
Q 007543 390 LS-AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNK 467 (599)
Q Consensus 390 i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g 467 (599)
.. .+...++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..-. .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 22 4666777777888888877654 346777888888888888888888888888764211 12557788888888888
Q ss_pred CHhHHHHHHHHHH
Q 007543 468 DFDSAVVWYKEME 480 (599)
Q Consensus 468 ~~~~A~~~~~~m~ 480 (599)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.7e-06 Score=79.00 Aligned_cols=220 Identities=8% Similarity=0.041 Sum_probs=138.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH----HHc-
Q 007543 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY----KKA- 259 (599)
Q Consensus 187 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 259 (599)
...++|++++++++..++. +...|+.--..+...+ +++++++.++.++... +.+..+|+.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 3446788888888775544 5556677666777777 7888888888877643 44555665544433 333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHH
Q 007543 260 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE--EALAV 335 (599)
Q Consensus 260 --g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~ 335 (599)
+++++++.+++++.+. . +.+..+|+.-...+.+.|.++ ++++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~--------------------------------~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS--------------------------------D-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh--------------------------------C-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4555555555555443 2 346667777777777777777 88888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 007543 336 FEEMLDAGVRPTHKAYNILLDAFAISGM------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG-AEKFFRR 408 (599)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~ 408 (599)
++++++.. +.|...|+.-...+.+.|. ++++++.+++++... +-|...|+.+-..+.+.|+... +..+..+
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 88888776 5677777766666666665 677777777666543 3466667666666666665333 3345554
Q ss_pred HhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 409 LKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 409 m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+.+.+ -..+...+..+++.|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 44322 123556666666666666666677777666664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.5e-08 Score=84.86 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FV 219 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~ 219 (599)
+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++.....+ +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4456666777777777777777766542 22566777777777777777777777777655433 43333222111 11
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..+....|...+++.++.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN----PDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 2222334566666666432 345566666666677777777776666666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.9e-07 Score=82.07 Aligned_cols=205 Identities=15% Similarity=0.075 Sum_probs=112.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-P-SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA--LTYQ 212 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~ 212 (599)
++..+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677778888888888888887765321 1 1356777788888888888888888888775443211 1333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 292 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 292 (599)
.+..++...+.. .+. .|..+...+...|++++|...|+++.+.... +...+......
T Consensus 83 ~~g~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l-- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ---------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL-- 139 (225)
T ss_dssp HHHHHHHHHHC----------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH--
T ss_pred HHHHHHHhhhhh-----hhh---------------hhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH--
Confidence 344444332110 000 0111222223344555555555555443211 11111111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHH
Q 007543 293 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQART 369 (599)
Q Consensus 293 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~ 369 (599)
..+...+. .....+...|.+.|++++|+..|+++++.. +.+. ..+..+..+|.+.|+.++|..
T Consensus 140 -----~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 -----VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -----HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00000000 012345677888889999999998888763 2222 467778888888999999998
Q ss_pred HHHHHHhCC
Q 007543 370 VFKCMRRDR 378 (599)
Q Consensus 370 ~~~~m~~~~ 378 (599)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888887753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-07 Score=90.30 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=110.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGV---RP--THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTML 390 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li 390 (599)
..|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666777777776666543210 00 1235666667777777777777777765432 1110 124566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHH
Q 007543 391 SAYVNASDMEGAEKFFRRLKQDGFV---P--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIM 460 (599)
Q Consensus 391 ~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li 460 (599)
..|.. |++++|+..|++..+.... + ...++..+...|.+.|++++|.+.|++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 67777 8888888888776542100 0 1456777888888888888888888887642 21111 22566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC----H--HHHHHHHHHHhhcCcHHHHHH
Q 007543 461 DAYGKNKDFDSAVVWYKEMESCGFPPD----Q--KAKNILLSLAKTADERNEANE 509 (599)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----~--~~~~~ll~~~~~~g~~~~A~~ 509 (599)
.++...|++++|...+++.. . .|+ . .....++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 67777788888888888876 3 232 1 1233444444 5667666665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.2e-07 Score=88.30 Aligned_cols=178 Identities=10% Similarity=0.025 Sum_probs=128.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
.+.+++.... +.+...+..+...+.+.|++++|...|++..+... .+...+..+...|.+.|++++|...+++....
T Consensus 104 ~l~~~l~~~l--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 104 AIRALLDXVL--PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHS--CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHc--CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444432 34456677888888999999999999999887642 36788889999999999999999999988765
Q ss_pred CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 007543 203 GPRPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 281 (599)
Q Consensus 203 g~~p~~~t~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 281 (599)
. |+.... ......+...++.+.|.+.+++.+... +.+...+..+...|...|++++|+..|.++.+... +
T Consensus 181 ~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p--~- 251 (287)
T 3qou_A 181 D--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQVGRNEEALELLFGHLRXDL--T- 251 (287)
T ss_dssp G--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--T-
T ss_pred h--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--c-
Confidence 3 444332 223334667778888888888887654 56778888889999999999999988888876521 1
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 282 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEML 340 (599)
Q Consensus 282 ~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (599)
..+...+..++..|...|+.++|...|++..
T Consensus 252 ----------------------------~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 252 ----------------------------AADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp ----------------------------GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----------------------------cccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 0124566777777777777777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-07 Score=84.06 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA-YV 394 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~ 394 (599)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777778888887777766543 4456677777777777788888877777765542 344333222211 11
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHhHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 473 (599)
..+...+|...+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222234566666666543 2256667777777777777777777777776543211 2446667777777777777777
Q ss_pred HHHHHHH
Q 007543 474 VWYKEME 480 (599)
Q Consensus 474 ~~~~~m~ 480 (599)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9.5e-08 Score=82.05 Aligned_cols=139 Identities=9% Similarity=0.018 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.++.++|.+.++...... +-++..+..|..+|.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHH
Confidence 345566666655554332 23345566788889999999999999998887643 378889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV-FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 261 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (599)
.|++..+..+. +..++..+...|.+.|++++|.+. ++++++.. |.+..+|......+...|+
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 99988886543 677888888888888988776654 57777543 4566777776666666553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-07 Score=98.43 Aligned_cols=153 Identities=12% Similarity=-0.014 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 292 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 371 (599)
Q Consensus 292 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (599)
+++++|.+.+++..+.. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+...|...|++++|...|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888888877653 2356778888888888888888888888887764 456778888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 007543 372 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 372 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 448 (599)
++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877653 3456778888888888888888888888887654 33677788888888888 88888888888887653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.4e-08 Score=84.92 Aligned_cols=142 Identities=13% Similarity=0.058 Sum_probs=91.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 434 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 434 (599)
..+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444556677777777766543 22 23345556667777777777777777777654 33677777788888888888
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHhhcCc
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW-YKEMESCGFPP-DQKAKNILLSLAKTADE 503 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 503 (599)
++|...|++..+.. +-+...|..+...|.+.|++++|.+. +++..+ +.| ++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 88888888777642 22466777777778888877765554 466766 344 34555555556655553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.9e-07 Score=81.40 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-P-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSYTT 388 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~-~~~~~ 388 (599)
...+..+...+.+.|++++|+..|+++++.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677778888888888887765311 1 1346666777788888888888888877764211 111 13333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007543 389 MLSAYVN------------------ASDMEGAEKFFRRLKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 449 (599)
Q Consensus 389 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (599)
+..++.. .|+.++|...|+++++.. |+ ...+..... . ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----l------~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----L------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----H------HHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----H------HHHHHHH-----
Confidence 3334433 456666666666666542 22 111111100 0 0000000
Q ss_pred CcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHhccCCC
Q 007543 450 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ----KAKNILLSLAKTADERNEANELLGNFNHPN 518 (599)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 518 (599)
......+...+.+.|++++|+..|+++.+ ..|+. ..+..+..++.+.|+.++|...++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLR--DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHH--HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456677788888888888888876 33432 346667778888888888888888765433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-07 Score=95.26 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=116.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 116 KKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 195 (599)
Q Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l 195 (599)
+++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+... .+..+|..+...|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666777777666554 45677888999999999999999999999988743 3688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 007543 196 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA---GGYEKARKLFALM 272 (599)
Q Consensus 196 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m 272 (599)
|++..+..+. +...+..+..++.+.|++++|.+.|++.++.. +.+...+..+...+... |++++|.+.+++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999886543 67888899999999999999999999998753 45678888899999999 9999999999988
Q ss_pred HHcC
Q 007543 273 AERG 276 (599)
Q Consensus 273 ~~~g 276 (599)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-06 Score=78.67 Aligned_cols=145 Identities=14% Similarity=0.045 Sum_probs=105.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455566777778888877777663 4567777777778888888888888888777654 3467778888888888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 431 VNNLEKMMEIYDKMRVNG--------------IKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~--------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.|++++|.+.|++..+.. ..|+ ...+..+..++.+.|++++|...++++.+ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~------- 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP------- 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG-------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc-------
Confidence 888888888888887642 1222 36788888899999999999999999987 45654
Q ss_pred HHHhhcCcHHHHHHHHHh
Q 007543 496 SLAKTADERNEANELLGN 513 (599)
Q Consensus 496 ~~~~~~g~~~~A~~~~~~ 513 (599)
..+..+++...+.+
T Consensus 155 ----~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 155 ----RHSKIDKAMECVWK 168 (213)
T ss_dssp ----GGGHHHHHHHHHHT
T ss_pred ----ccchHHHHHHHHHh
Confidence 23456666666654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-05 Score=76.00 Aligned_cols=167 Identities=8% Similarity=-0.050 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--
Q 007543 314 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTH------KAYNILLDAFAISGMVDQARTVFKCMRRDRC---SPD-- 382 (599)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-- 382 (599)
..+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 45566778889999999999999988775422 22 2234456667788899999999998875321 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQ---D-GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN 452 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~ 452 (599)
..+|+.+...|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|.+.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888899999999999999998762 2 1111 1257888999999999999999999987642 11111
Q ss_pred -HHHHHHHHHHHHhcCCHhHH-HHHHHHHHh
Q 007543 453 -QTIFTTIMDAYGKNKDFDSA-VVWYKEMES 481 (599)
Q Consensus 453 -~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 481 (599)
..+|..+...|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788889999999999999 777777653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-06 Score=85.66 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=89.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHHcCCHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP----RP-SALTYQIILKLFVEANKFK 225 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p-~~~t~~~ll~~~~~~g~~~ 225 (599)
.++++.|...|++. ...|...|++++|.+.|.+..+... .+ -..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666655543 3455666777777777766543211 00 1235556666666667777
Q ss_pred HHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 007543 226 EAEEVFMTLLDEEKSPLKP--DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 303 (599)
Q Consensus 226 ~A~~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~ 303 (599)
+|...|++.++.....-.+ -..+++.+...|.. |++++|+..|++..+. +..
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-------------------------~~~ 147 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-------------------------FEN 147 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-------------------------HHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-------------------------HHh
Confidence 7766666665421000011 12345555666655 6666666666555431 100
Q ss_pred HHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 304 MQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMR 375 (599)
Q Consensus 304 m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (599)
.+.. ....++..+...|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|...|++..
T Consensus 148 ---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 148 ---EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ---CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 0000 01234555666666666666666666665432 10000 1133444444444555555555555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-06 Score=77.96 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 219 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 219 (599)
.+..+...+...|++++|.+.|++.. .|+...|..+...|.+.|++++|++.|++..+..+ .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 35567788889999999999998874 46888999999999999999999999999887653 36788889999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCC-----------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007543 220 EANKFKEAEEVFMTLLDEEKSP-----------LKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERG 276 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~-----------~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (599)
..|++++|.+.|+++++..... ..| ...++..+...|.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998642110 111 23778889999999999999999999988753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.7e-06 Score=78.40 Aligned_cols=126 Identities=8% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCcC-HHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPN-QTIFT 457 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~ 457 (599)
+...+...|++++|+..|++..+... .++ ..+|+.+...|...|++++|...|+++.+ . +..+. ..+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33344444555555555555544211 111 22455555566666666666666655542 1 11111 22555
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcC-cHHHHHHHHHhc
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTAD-ERNEANELLGNF 514 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g-~~~~A~~~~~~~ 514 (599)
.+...|.+.|++++|+..+++..+ .+..+. ..+|..+..++.+.| .+++|...+++.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 566666666666666666655543 111222 344555555666666 346665555543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.4e-06 Score=74.02 Aligned_cols=130 Identities=16% Similarity=0.027 Sum_probs=105.5
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|++.|++..+..+ .+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 456678888999999999999999988764 33788999999999999999999999999988643 3678888899999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
...|++++|.+.|+++++.. +.+...+. .++..+.+.|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998653 34555553 344457788999999998887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-06 Score=71.67 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=82.2
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|++.|++.++..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 346677788888888888888888887764 336788888888888888888888888888776433 677788888888
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 253 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li 253 (599)
...|++++|.+.|++.++.+ |.+...+..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888887653 44555555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=4.8e-07 Score=86.74 Aligned_cols=195 Identities=9% Similarity=0.025 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 55678888899999999999999999998874 5578899999999999999999999999998753 446788899999
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
+|...|++++|...|++..+.+.. +...+...+....+ ..++ .-+..........+..+...+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 999999999999999988754211 10011111111111 1111 122223333445555555555333 3689999
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHhhc-CcHHHHHHHHHhccCC
Q 007543 472 AVVWYKEMESCGFPPDQKA-KNILLSLAKTA-DERNEANELLGNFNHP 517 (599)
Q Consensus 472 A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~-g~~~~A~~~~~~~~~~ 517 (599)
|++.+++..+ ..|+... ...+...+.+. +.+++|.+++.+..+.
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887 4666543 34444445554 7789999999987643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-05 Score=76.15 Aligned_cols=161 Identities=10% Similarity=-0.035 Sum_probs=122.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 007543 318 LLINAYGKARREEEALAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PD----ICSYT 387 (599)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~ 387 (599)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346788999999999999999987431 2221 13445677777888999999999999874222 23 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-HHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQ----D-GFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN-QTIF 456 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~ 456 (599)
.+...|...|++++|+..|+++.+ . +..+. ..+|..+...|.+.|++++|.+.+++..+ .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999873 1 11222 34788999999999999999999998774 232333 5688
Q ss_pred HHHHHHHHhcCC-HhHHHHHHHH
Q 007543 457 TTIMDAYGKNKD-FDSAVVWYKE 478 (599)
Q Consensus 457 ~~li~~~~~~g~-~~~A~~~~~~ 478 (599)
..+..++.+.|+ +++|.+.+++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999995 6898876643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-06 Score=68.90 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=87.8
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|+.+|+++.+..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567778888888888899988888887753 33677888888888888888888888888877643 367778888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 259 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (599)
+...|++++|...|+++++.. +.+...+..+...+.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 888888888888888887643 44555666665555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=7e-05 Score=72.75 Aligned_cols=173 Identities=8% Similarity=0.000 Sum_probs=119.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-N-KFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g-~~~~A 227 (599)
.+..++|+++++++...... +..+|+.--..+...| .+++++++++.+....++ +..+|+.-...+... + +.+++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 34456788888888887533 6778888877777778 489999999998887665 777787777777776 6 78888
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--------KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 299 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~ 299 (599)
+++++.+++.+ +.|..+|+.-...+.+.|.++ ++++.++++.+.
T Consensus 145 L~~~~k~L~~d----pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------------------ 196 (349)
T 3q7a_A 145 IEYIHGSLLPD----PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------------------ 196 (349)
T ss_dssp HHHHHHHTSSC----TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------------------------
Confidence 99998888643 667777776655555544443 455555444443
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007543 300 IYDQMQRAGLQPDVVSYALLINAYGKARR-------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 363 (599)
Q Consensus 300 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (599)
. ..|...|+.....+.+.++ ++++++.+++++... +-|...|+-+-..+.+.|+
T Consensus 197 --------d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 --------D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp --------C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred --------C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 2 2366667666666666664 677888887777665 5667777766666665554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-06 Score=70.34 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..+......|.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666667777777777777666554 3356667777777777777777777777766542 23456677777777
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~ 481 (599)
...|++++|++.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 777777777777777766
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-06 Score=68.11 Aligned_cols=113 Identities=20% Similarity=0.306 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555556666666666666666665443 2345566666666666666666666666666432 2345566666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 463 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
+...|++++|...++++.+.. +.+...+..+..++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 667777777777776666532 22334444444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.4e-05 Score=76.96 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-----LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QK 247 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 247 (599)
.+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|...+.+.++.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445556666777777777777666654322111 1233345556677888888888888775322222222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 007543 248 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP--DVVSYALLINAYGK 325 (599)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 325 (599)
+++.+...|...|++++|...|++..+. ++ .....+ ...++..+...|.+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~-------------------------~~---~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQ-------------------------LE---ALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HH---hcCccccchHHHHHhHHHHHHH
Confidence 7889999999999999999999887642 11 110001 12578888999999
Q ss_pred cCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAG----VRP-THKAYNILLDAFAISGMVDQA-RTVFKCMR 375 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 375 (599)
.|++++|+..+++..+.. ... -..+|..+...|.+.|++++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999876431 111 155778888888888888888 66676654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-06 Score=73.34 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+.+.|++++|...|+++.... +-+...|..+..+|...|++++|.+.|++..+.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3456666667777777777777777777654 3367777777777778888888888888777542 2235677777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 463 YGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
|.+.|++++|...|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888887777 456553
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.3e-06 Score=71.32 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007543 315 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 394 (599)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 394 (599)
.+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555555556666666555555443 3344455555555555555555555555544431 223444444444444
Q ss_pred hcCCHHHHHHHHHHHhh
Q 007543 395 NASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~ 411 (599)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 45555555555444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=74.64 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...+.+.|++++|+..|++.....+. +...|..+..+|...|++++|...|+++++.. +.+...|..+..
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~lg~ 112 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHHHHH
Confidence 4444444444444444444444444443222 34444444444444444444444444444332 223344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
+|.+.|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00011 Score=71.38 Aligned_cols=174 Identities=9% Similarity=0.033 Sum_probs=123.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-C-C
Q 007543 185 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-G-G 261 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~ 261 (599)
+.+..++|++++++++..++. +..+|+.--..+...| .++++++.++.++... +.+..+|+.-...+.+. + +
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHHCCSC
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHhcCCC
Confidence 345567899999999987655 6667787777777888 5999999999998754 67788888877777766 6 7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--------HHHH
Q 007543 262 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE--------EEAL 333 (599)
Q Consensus 262 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--------~~A~ 333 (599)
+++++++++++.+.. +.|...|+--...+.+.|.+ .+++
T Consensus 141 ~~~EL~~~~k~L~~d---------------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD---------------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp CHHHHHHHHHHTSSC---------------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 778888777776542 22444444433333333333 4888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007543 334 AVFEEMLDAGVRPTHKAYNILLDAFAISGM-------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 398 (599)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 398 (599)
+.++++++.. +.|...|+.....+.+.+. ++++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 188 e~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 188 DWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 8999998876 6688888888777777775 678888888777653 4466777776666666554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=70.04 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=93.2
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345667788888999999999999999988764 237888888889999999999999999988876433 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
.++...|++++|.+.|++.++.. +.+...+..+...+.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhc
Confidence 88999999999999998887643 334556666666666554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=82.95 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|.+.++++++.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 4455566666666666666666666666554322 55566666666666666666666666665432 345566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+..+|...|++++|...|.+..+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666777776666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=5.6e-06 Score=68.12 Aligned_cols=119 Identities=15% Similarity=0.061 Sum_probs=95.4
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...+...|++++|...|++..... +.+...|..+...+...|++++|++.+++..+..+ .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 4566778888889999999999999888763 33688888899999999999999999998887643 357788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 262 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (599)
+...|++++|.+.|++.++.. +.+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhcC
Confidence 999999999999999888643 44667777788887777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-06 Score=76.19 Aligned_cols=157 Identities=14% Similarity=0.066 Sum_probs=98.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 007543 324 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTMLSAYVNASD 398 (599)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~ 398 (599)
...|++++|.++++.+... ......++..+...+...|++++|...+++.... +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777754444321 1234556677777777777777777777766541 1111 23456666777778888
Q ss_pred HHHHHHHHHHHhhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcC
Q 007543 399 MEGAEKFFRRLKQD----GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNK 467 (599)
Q Consensus 399 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g 467 (599)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +-... ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888887776542 1111 2345677788888888888888888876631 21111 234577778888888
Q ss_pred CHhHHHHHHHHHHh
Q 007543 468 DFDSAVVWYKEMES 481 (599)
Q Consensus 468 ~~~~A~~~~~~m~~ 481 (599)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=81.79 Aligned_cols=133 Identities=15% Similarity=0.034 Sum_probs=113.6
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
+...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677899999999999999999999988643221 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA-RKLFALMAE 274 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 274 (599)
.+. +...|..+..+|...|++++|...|+++++.. +.+..++..+...+.+.|+.++| ...|..|..
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 78899999999999999999999999998754 55778899999999999999998 456766654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=68.58 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555555666666666666666655432 2355566666666666666666666666666432 22355666666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCc
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 503 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 503 (599)
...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666666666665532 2244455555555555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=74.36 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 252 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 252 (599)
...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|...|++++... +.+...+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~l 95 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 334445555555555555555555555543322 44455555555555555555555555555432 2334455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+|...|++++|...|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.5e-06 Score=69.09 Aligned_cols=116 Identities=11% Similarity=0.039 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
+...+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34555556666666666666666666665543 2255566666666666666666666666666432 224556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhc
Q 007543 462 AYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTA 501 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~ 501 (599)
++.+.|++++|.+.+++..+. .|+ ...+..+..++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 666666666666666666552 232 23444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=75.71 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNL--EKM 437 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~A 437 (599)
.|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555544432 2344555555555666666666666666555433 2245555555555 5566665 666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 438 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
...|++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666432 22345566666666666666666666666665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.6e-06 Score=75.76 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=114.5
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNK----KGYA-PSVVSHTALMEAYGRGGRY 189 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~ 189 (599)
.++++.|.++++.+.... ......+..+...|...|++++|...|++... .|.. ....+++.+...|...|++
T Consensus 5 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 467788888666664422 23466788899999999999999999998776 1111 1356788899999999999
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCC
Q 007543 190 KNAEAIFRRMQSS----GPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGG 261 (599)
Q Consensus 190 ~~A~~l~~~m~~~----g~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 261 (599)
++|.+.+++..+. +..+ ....+..+...+...|++++|...+++.++.....-.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999887653 2121 234677788889999999999999998874311111111 2346788889999999
Q ss_pred HHHHHHHHHHHHH
Q 007543 262 YEKARKLFALMAE 274 (599)
Q Consensus 262 ~~~A~~~~~~m~~ 274 (599)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-06 Score=76.39 Aligned_cols=139 Identities=9% Similarity=-0.093 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHH
Q 007543 350 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKG 427 (599)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 427 (599)
.+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455667788889999999999887764 3544466666668889999999999998665432 111 2367778899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 9999999999999999875433254 34667777888999999999999999988 4566333333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.2e-06 Score=73.09 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=67.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HH
Q 007543 150 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL-FVEANKF--KE 226 (599)
Q Consensus 150 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 226 (599)
..|++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666655542 225556666666666666666666666666554322 45555555555 5566665 66
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 227 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 227 A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
|...|+++++.. +.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD----SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666665432 334555666666666666666666666666554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.6e-06 Score=74.09 Aligned_cols=97 Identities=8% Similarity=-0.042 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|.+.|++..... +.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455566667777777777777777776654 3366777777777777788888888877777542 2345677777777
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 007543 463 YGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~ 481 (599)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7788888888888877766
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-05 Score=66.17 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555666667777777777777666543 3356667777777777777777777777776542 22355677777777
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 007543 464 GKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~ 481 (599)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777777765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=78.36 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 463 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (599)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 445555555555555555555555555443 2245555556666666666666666666655432 22344555555555
Q ss_pred HhcCCHhHH-HHHHHHH
Q 007543 464 GKNKDFDSA-VVWYKEM 479 (599)
Q Consensus 464 ~~~g~~~~A-~~~~~~m 479 (599)
.+.|++++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 555555555 2344444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=74.93 Aligned_cols=190 Identities=9% Similarity=-0.026 Sum_probs=141.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------
Q 007543 325 KARREEEALAVFEEMLDAGVRPTHKAYNIL-------LDAFAISGMVDQARTVFKCMRRDRCSPD--------------- 382 (599)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 382 (599)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999998875 5566788777 4566666666666655555443 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--H
Q 007543 383 -------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--Q 453 (599)
Q Consensus 383 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~ 453 (599)
....-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 2234456678889999999999999988754 544466667778899999999999998665431 121 3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 454 TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|...++++...++.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4778889999999999999999999986433254 345667778899999999999999998755554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-05 Score=66.18 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcC----HHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPN----QTIFT 457 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~ 457 (599)
..+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345556666777777777777777766654 3356667777777777777777777777766421 1111 23566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 493 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 493 (599)
.+..++...|++++|++.|++.++ ..||+.+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 677777778888888888877766 4566655443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-05 Score=62.28 Aligned_cols=97 Identities=14% Similarity=0.054 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 007543 383 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 462 (599)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (599)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666677777777766666543 2356666666777777777777777777766542 2245666677777
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 007543 463 YGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~ 481 (599)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777766
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00012 Score=70.72 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 007543 329 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD-MEGAEKF 405 (599)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 405 (599)
+++++.+++.+.... +.+..+|+.-...+.+.| .+++++.+++.+.+.. +.|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344555555554443 334445544444444444 2455555555555432 2344445444444444454 3555555
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAKV--------------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN----- 466 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----- 466 (599)
+.++++..+ -|...|+.....+.+. +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 555554432 2444444444444333 23555555555555432 22344554443333333
Q ss_pred ------CCHhHHHHHHHHHHhCCCCCCHHHHHH--HH---HHHhhcCcHHHHHHHHHhccC
Q 007543 467 ------KDFDSAVVWYKEMESCGFPPDQKAKNI--LL---SLAKTADERNEANELLGNFNH 516 (599)
Q Consensus 467 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~--ll---~~~~~~g~~~~A~~~~~~~~~ 516 (599)
+.++++++.++++.+ +.||. .|.. ++ .+....|..+++...+.++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 335556666666655 34443 1211 11 112234555555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00074 Score=65.21 Aligned_cols=120 Identities=10% Similarity=0.069 Sum_probs=82.6
Q ss_pred hcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 150 KQGDF-NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------YKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 150 ~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
+.|.+ ++|+++++.+...... +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444 4788888888877533 56667765444443333 57788888888776555 777777777677
Q ss_pred HHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 007543 219 VEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG-YEKARKLFALMAER 275 (599)
Q Consensus 219 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~ 275 (599)
...+ .+++++.+++.+++.+ +.|..+|+.-...+...|. ++++++.++++.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 7777 3788888888888754 6677777777777777776 57777777777665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.6e-05 Score=61.77 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 445566777777788888888887777653 236677777777777778888888877777765432 566677777777
Q ss_pred HHcCCHHHHHHHHHHhHh
Q 007543 219 VEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~ 236 (599)
...|++++|.+.++..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=66.34 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 007543 384 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KPN----QTIFT 457 (599)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~ 457 (599)
..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666543 33566666777777777777777777777664310 111 55667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
.+...+...|++++|...++++.+ ..|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777777777777777777777776 34565554444433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-05 Score=70.11 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=97.7
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456778888899999999999999887532211 2788889999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR-KLFALMAE 274 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 274 (599)
+ .+...+..+..++...|++++|.+.|++.++.. +.+..++..+...+...++.+++. ..|..+..
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 377888889999999999999999999988653 456778888888888877777766 45555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.2e-05 Score=64.52 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.|..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|...|++.++.+ +.+...+..+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 80 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 3444444444555555555555544443222 34444445555555555555555555554332 233444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 007543 255 MYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~ 274 (599)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=64.45 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQI 213 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~~~ 213 (599)
.+..|...|.+.|++++|++.|++..+... .+..+|+.+..+|.+.|++++|++.|++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344566777777777777777777766532 25667777777777777777777777776553211 11 124555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
+..++...|++++|.+.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666666666666666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-05 Score=67.72 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=82.9
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45677888889999999999999999887642 37888999999999999999999999998886543 67788888889
Q ss_pred HHHcCCHHHHHHHHHHhHhcc
Q 007543 218 FVEANKFKEAEEVFMTLLDEE 238 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~ 238 (599)
|...|++++|.+.|++.++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999888653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=67.27 Aligned_cols=97 Identities=11% Similarity=-0.001 Sum_probs=75.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..+..+...+.+.|++++|...|++...... .+...|..+..+|.+.|++++|+..|++.....+. +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 3455677778888888888888888877642 36778888888888888888888888888876543 566777788888
Q ss_pred HHcCCHHHHHHHHHHhHhc
Q 007543 219 VEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~ 237 (599)
...|++++|.+.|+..++.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.9e-05 Score=64.72 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=76.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
.+...+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 456677778888888888888888888877764 236778888888888888888888888888776433 667777788
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.++...|++++|...|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2.4e-05 Score=65.97 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|...|++++..+ +.+...+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHH
Confidence 4557778888999999999999999999887543 78888999999999999999999999998754 556778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+..+|...|++++|...|++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.18 E-value=6e-05 Score=63.50 Aligned_cols=99 Identities=10% Similarity=-0.044 Sum_probs=76.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 211 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 211 (599)
.+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+...|...|++++|+..+++..+..+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34566777888888888888888888888776 345 577888888888888888888888887775332 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+..++...|++++|.+.|++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77778888888888888888888754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-05 Score=63.29 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
.+...|..+...+...|++++|+..|.+.....+. +...+..+..++...|++++|...++..++.. +.+...+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHHHH
Confidence 47889999999999999999999999999887543 68889999999999999999999999998754 55788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
.+...|...|++++|...|.+..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999988754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.4e-05 Score=62.93 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 457 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (599)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555666666666677777777777766654 344 4566667777777777777777777766542 22456666
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.+..++...|++++|...+++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777766
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-05 Score=66.28 Aligned_cols=99 Identities=11% Similarity=0.043 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|+..|++.++.. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD----PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 5678889999999999999999999999886543 78889999999999999999999999999754 556889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 252 MIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+...|.+.|++++|+..|++..+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999998865
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=63.25 Aligned_cols=98 Identities=9% Similarity=-0.063 Sum_probs=59.1
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PSALTYQIILK 216 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 216 (599)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+..+. .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445566666666666666666666666543 225556666666666666666666666666654221 03555566666
Q ss_pred HHHHc-CCHHHHHHHHHHhHh
Q 007543 217 LFVEA-NKFKEAEEVFMTLLD 236 (599)
Q Consensus 217 ~~~~~-g~~~~A~~~~~~~~~ 236 (599)
.+... |++++|.+.++.++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 66666 666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-05 Score=68.09 Aligned_cols=94 Identities=15% Similarity=0.045 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 498 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 498 (599)
..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 567777777778888888888888777642 3346677777788888888888888888877632 33445566666666
Q ss_pred hhcCcHHHHH-HHHHhc
Q 007543 499 KTADERNEAN-ELLGNF 514 (599)
Q Consensus 499 ~~~g~~~~A~-~~~~~~ 514 (599)
...++.+++. ..++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 6666666555 333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=62.88 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHH
Q 007543 385 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDA 462 (599)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~ 462 (599)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444445555555555555444332 2234444444444444555555555554444331 11 23444444444
Q ss_pred HHhc-CCHhHHHHHHHHHHh
Q 007543 463 YGKN-KDFDSAVVWYKEMES 481 (599)
Q Consensus 463 ~~~~-g~~~~A~~~~~~m~~ 481 (599)
+.+. |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 4444 455555554444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=63.88 Aligned_cols=110 Identities=17% Similarity=0.188 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQ 212 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~----~~t~~ 212 (599)
..+..+...|...|++++|...|++..+.. +.+...|..+...|...|++++|...|++.....+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456667777888888888888888877653 336777778888888888888888888877664321 12 55667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHH
Q 007543 213 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 254 (599)
Q Consensus 213 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~ 254 (599)
.+...+...|++++|.+.|+.+++. .|+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE-----HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCHHHHHHHHH
Confidence 7777777788888888888777653 345444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-05 Score=62.35 Aligned_cols=94 Identities=9% Similarity=-0.040 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+..+. +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 4556677777788888888887777653 236777777777777788888888877777775433 56667777777777
Q ss_pred cCCHHHHHHHHHHhHh
Q 007543 221 ANKFKEAEEVFMTLLD 236 (599)
Q Consensus 221 ~g~~~~A~~~~~~~~~ 236 (599)
.|++++|...|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=4.5e-05 Score=62.29 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 255 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~ 255 (599)
+..+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++.++.+ +.+...+..+...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 445566666777777777777777665433 56666777777777777777777777776543 4456667777777
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 007543 256 YKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~ 275 (599)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777776653
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-05 Score=65.98 Aligned_cols=136 Identities=13% Similarity=0.061 Sum_probs=100.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----A 208 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~ 208 (599)
..+..+...|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.+++..+.... ++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45677888899999999999999887653100 11 247888899999999999999999987653111 11 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..+..+...+...|++++|.+.+++.++... .+ ......++..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677788889999999999999988875311 11 111245677888899999999999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00045 Score=70.22 Aligned_cols=194 Identities=9% Similarity=0.004 Sum_probs=112.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH
Q 007543 321 NAYGKARREEEALAVFEEMLDAGVRPT----------------HKAYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDI 383 (599)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 383 (599)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445666777777777777765431110 1235667777777777777777777654421 11111
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCC--C
Q 007543 384 ----CSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRV--NGI--K 450 (599)
Q Consensus 384 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~ 450 (599)
.+.+.+-..+...|+.+.|..+++.... .+..+ -..++..+...|...|++++|..++++... .+. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222222333455777777777776542 22222 245667777778888888888888777653 111 1
Q ss_pred cC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 451 PN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQ----KAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 451 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
+. ..+|..++..|...|++++|..++++.... .+..+. ..+..+...+...|++++|...+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11 346777777788888888888887776431 111111 23445555667777777777666553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0002 Score=58.69 Aligned_cols=96 Identities=19% Similarity=0.090 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV---VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIIL 215 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll 215 (599)
+..+...+.+.|++++|...|++..+.... +. ..+..+..++.+.|++++|+..|++..+..+... ...+..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345566777778888888888877765321 22 4677777777888888888888887776543311 45666677
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 007543 216 KLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
.++...|++++|...|+.+++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777778888888888777753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.8e-05 Score=64.49 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007543 420 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 480 (599)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (599)
++..+...+...|++++|.+.+++..+. +-.+. ..++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4445555555566666666655554421 11111 2244555555566666666666665554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=75.62 Aligned_cols=131 Identities=15% Similarity=0.039 Sum_probs=105.3
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 138 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 138 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34677889999999999999999999887532211 6899999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK-LFALMA 273 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 273 (599)
+. +...|..+..+|...|++++|...|+++++.. +.+..++..+...+.+.++.++|.+ .+..|.
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 78889999999999999999999999998643 4456678888889998888887764 444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00038 Score=70.77 Aligned_cols=212 Identities=11% Similarity=0.001 Sum_probs=134.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
...+.+.|++++|++.|.++.+......... ...+........ ....+..+...|.+.|++++|
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAA-----AGASVDDKRRNE-----------QETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBS-----SSSSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhH-----HHHHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHH
Confidence 4556778999999999888876532111000 000000000000 012356788889999999999
Q ss_pred HHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 007543 333 LAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPD-ICSYTTMLSAYVNASDMEGA 402 (599)
Q Consensus 333 ~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 402 (599)
.+++..+...-- .++. .+.+.+-..+...|+.++|..+++..... +..+. ..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 998887754211 1122 12333334444568888888888776432 22232 45677788889999999999
Q ss_pred HHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCCHhH
Q 007543 403 EKFFRRLKQD----GFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 403 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~ 471 (599)
..+++++... +-++ ...+|..++..|...|++++|..++++.... +.++. ...+..+...+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 9998887532 1111 2456888888999999999999998887631 11111 2456777777888899999
Q ss_pred HHHHHHHHH
Q 007543 472 AVVWYKEME 480 (599)
Q Consensus 472 A~~~~~~m~ 480 (599)
|...+.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-05 Score=80.35 Aligned_cols=123 Identities=17% Similarity=0.040 Sum_probs=94.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..++..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 34456677899999999999988864 336889999999999999999999999999987543 6788889999999999
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKLFAL 271 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~ 271 (599)
++++|.+.|+++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHHHHHS----TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999998753 2233455555555 8888999999998873
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=64.70 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=53.1
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
.|++++|+..|++..+.+ -+.+...|..+...|...|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766653 1223456666777777777777777777777665433 4566666666777777777777
Q ss_pred HHHHHhHhc
Q 007543 229 EVFMTLLDE 237 (599)
Q Consensus 229 ~~~~~~~~~ 237 (599)
..|++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=72.82 Aligned_cols=122 Identities=8% Similarity=0.020 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNK----------------KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~----------------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.+..+...|.+.|++++|.+.|++..+ .. +.+..+|+.+..+|.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 466788899999999999999998876 21 1246788889999999999999999999998865
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 204 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 267 (599)
Q Consensus 204 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (599)
+. +...|..+..+|...|++++|.+.|+++++.. +.+...+..+...+.+.++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67788888999999999999999999988653 4467777778888877777776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00012 Score=63.20 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
+...|..+..+|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 34577788888888888888888888888653 33467888888888888888888888888887 456543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0001 Score=76.20 Aligned_cols=116 Identities=9% Similarity=-0.053 Sum_probs=93.1
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
...+++++|.+.++.+.+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+..+|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 45678999999999888775 45688999999999999999999999999998753 3788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTYQIILKL--FVEANKFKEAEEVFM 232 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~g~~~~A~~~~~ 232 (599)
++.|++..+..+. +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999886543 33344445444 888899999999998
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00026 Score=57.97 Aligned_cols=90 Identities=9% Similarity=-0.018 Sum_probs=55.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHH
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMD 461 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~ 461 (599)
+...+...|++++|...|+++.+.... +. ..+..+..++.+.|++++|...|++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555666666666666666553211 22 355566666667777777777777766532 22 445666666
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 007543 462 AYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~ 481 (599)
++...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 67777777777777777765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00016 Score=74.34 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007543 418 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 496 (599)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~ 496 (599)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4677788888888888888888888888653 33577888888888899999999999998887 45544 56777777
Q ss_pred HHhhcCcHHHHHH-HHHhcc
Q 007543 497 LAKTADERNEANE-LLGNFN 515 (599)
Q Consensus 497 ~~~~~g~~~~A~~-~~~~~~ 515 (599)
++.+.++.+++.+ ++++|.
T Consensus 394 ~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 394 CQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 8888888877764 455554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=72.03 Aligned_cols=140 Identities=11% Similarity=0.050 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
...+..+...+.+.|++++|+..|++..+.- +.. ..... .++..+.. +-+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHH-HHHHHHHHHHHHH
Confidence 4457777778888888888888887776520 000 00001 11111111 2245677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCcHHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 506 (599)
|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++++|+..++++.+ +.| +...+..+..++...++.++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888643 23466788888888888888888888888877 344 45566666677777777766
Q ss_pred HHHH
Q 007543 507 ANEL 510 (599)
Q Consensus 507 A~~~ 510 (599)
+.+.
T Consensus 360 a~k~ 363 (370)
T 1ihg_A 360 KEKA 363 (370)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 6543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=62.56 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKK--------G---------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
..+......+.+.|++++|...|++.... . -+.+...|..+..+|.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556778888888888888888877653 0 011345778888888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 202 SGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 202 ~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+. +...|..+..+|...|++++|...|++.++.
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 6433 6777888888888888888888888888754
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00025 Score=72.90 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007543 203 GPRPSALTYQIILK----------LFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 203 g~~p~~~t~~~ll~----------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+..++..++..++. .+...|++++|+.++++.++....-+.++ ..+++.|...|...|++++|+.+
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~ 373 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHY 373 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44556655544332 35578999999999999887544444443 46789999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC
Q 007543 269 FALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD-----AG 343 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g 343 (599)
+++..+ +++.......+-...+++.|...|...|++++|+.++++..+ .|
T Consensus 374 ~~~aL~-------------------------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 374 ARRMVD-------------------------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHH-------------------------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 987664 333333322222346789999999999999999999988753 23
Q ss_pred CC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 344 VR-PT-HKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 344 ~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
.. |+ ..+.+.+-.++...+.+++|..+|+.+.+
T Consensus 429 ~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 429 PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11 22445666677777788888888887765
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=4.1e-05 Score=62.00 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHH
Q 007543 396 ASDMEGAEKFFRRLKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 396 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (599)
.|++++|+..|++..+.+ -+-+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355566666666665542 12234456666666666666666666666666542 223556666666666666666666
Q ss_pred HHHHHHHh
Q 007543 474 VWYKEMES 481 (599)
Q Consensus 474 ~~~~~m~~ 481 (599)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=8e-05 Score=73.19 Aligned_cols=129 Identities=11% Similarity=0.025 Sum_probs=69.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV------------------SHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
..+..+...|.+.|++++|...|++.... .|+.. +|+.+..+|.+.|++++|+..|++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34667788888999999999999998765 24433 67777777777777777777777777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 007543 201 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 201 ~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 274 (599)
+..+ .+...|..+..+|...|++++|...|+++++.. +.+..++..+... ....+..+++...|..|..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6533 256677777777777777777777777776432 2233444444443 2233455566666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00044 Score=58.56 Aligned_cols=99 Identities=17% Similarity=0.115 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCCC
Q 007543 176 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRP------S-----ALTYQIILKLFVEANKFKEAEEVFMTLLDE--EKSPL 242 (599)
Q Consensus 176 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 242 (599)
+......+.+.|++++|++.|++.++..+.. + ...|..+..++.+.|++++|+..+++.++. ....+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344444445555555555555554432220 1 125556666666666666666666666543 00001
Q ss_pred -CCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 243 -KPDQKMF----HMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 243 -~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
+.+...| .....++...|++++|+..|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345667 7888888888888888888888764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0017 Score=68.38 Aligned_cols=174 Identities=10% Similarity=-0.004 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM----------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 397 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 397 (599)
..++|++.+++++... +-+..+|+.--..+...|+ +++++..++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3568899999998875 5566677777777777776 899999999998764 557888888888888889
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 007543 398 --DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-------- 466 (599)
Q Consensus 398 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 466 (599)
+++++++.++++.+... -|..+|+.-...+.+.| .++++.+.++++.+.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 77999999999998764 48889998888888989 8999999999998764 34677888777776653
Q ss_pred ------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHH
Q 007543 467 ------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 506 (599)
Q Consensus 467 ------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 506 (599)
+.+++++++++++.... |-|...|.-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999998742 4456778888888877776443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=73.87 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=97.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC---C-CHHHHH
Q 007543 182 AYGRGGRYKNAEAIFRRMQSS-----GP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK---P-DQKMFH 250 (599)
Q Consensus 182 ~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~-~~~~~~ 250 (599)
.+...|++++|+.++++..+. |. .|+ ..+++.|..+|...|++++|+.++++.++....-+. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887642 21 222 357889999999999999999999988753211122 2 246789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 251 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 330 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (599)
.|...|...|++++|+.++++..+ +++.......+....+.+.+-.++...+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~-------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA-------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987664 3333332222122334566777788888999
Q ss_pred HHHHHHHHHHH
Q 007543 331 EALAVFEEMLD 341 (599)
Q Consensus 331 ~A~~~~~~m~~ 341 (599)
+|+.+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0012 Score=55.00 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007543 363 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMM 438 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 438 (599)
++++|+..|++..+.| .|+.. +...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555444 22222 3334444445555555555555443 44455555555555 45556666
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCC
Q 007543 439 EIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 483 (599)
+.|++..+.| +...+..|...|.. .+++++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666555543 34444555555555 556666666666655544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=9e-05 Score=72.82 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007543 348 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 427 (599)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 427 (599)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455667777778888888888888887654 333321 122333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HhhcCcHH
Q 007543 428 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSL-AKTADERN 505 (599)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~-~~~~g~~~ 505 (599)
|.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+ +.|+. ..+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988653 33577888899999999999999999999877 45554 344444444 23456677
Q ss_pred HHHHHHHhccCCCC
Q 007543 506 EANELLGNFNHPNN 519 (599)
Q Consensus 506 ~A~~~~~~~~~~~~ 519 (599)
++..+++++....+
T Consensus 317 ~a~~~~~~~l~~~p 330 (338)
T 2if4_A 317 KQKEMYKGIFKGKD 330 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHhhCCCC
Confidence 77888887764443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0018 Score=54.06 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 403 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 403 (599)
++++|+..|++..+.| .++.. |...|...+.+++|...|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 33333 5555555556666666666666654 55666666666666 56777777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
..|++..+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766654 55666666666666 667777777777776665
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0028 Score=66.68 Aligned_cols=173 Identities=10% Similarity=0.019 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-
Q 007543 294 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR----------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG- 362 (599)
Q Consensus 294 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g- 362 (599)
.++|.+.++.+.... +-+...|+.--.++.+.|+ ++++++.++.+.+.. +-+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345566666666653 2245566666666666666 899999999998876 667888888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---------
Q 007543 363 -MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------- 431 (599)
Q Consensus 363 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 431 (599)
++++++..++++.+.. +-+...|+.-...+.+.| .++++++.++++++..+ -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998864 447888888888888888 89999999999988764 3888888888777763
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhH
Q 007543 432 -----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 471 (599)
Q Consensus 432 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (599)
+.++++.+.+++..... +-|...|.-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999988653 3457889988888888877444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00063 Score=57.62 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP------SV-----VSHTALMEAYGRGGRYKNAEAIFRRMQSS-----G 203 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g 203 (599)
.+......+.+.|++++|...|++..+..... +. ..|+.+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34466778888999999999999888753220 22 38999999999999999999999999885 1
Q ss_pred CCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 204 PRP-SALTY----QIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 204 ~~p-~~~t~----~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
+.| +...| .....++...|++++|+..|++.++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 144 45577 88889999999999999999999863
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.56 E-value=9.4e-05 Score=58.81 Aligned_cols=68 Identities=10% Similarity=0.059 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 487 (599)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..++.+.|++++|+..+++..+ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC
Confidence 45567777788888888888888888877642 33567788888888888888888888888877 4454
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00066 Score=54.41 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 007543 156 KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 235 (599)
.|...|++..+.. +.+...|..+...|...|++++|+..|++..+..+. +...|..+..++...|++++|...|++.+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555443 224555666666666666666666666665554322 44555555666666666666666666554
Q ss_pred h
Q 007543 236 D 236 (599)
Q Consensus 236 ~ 236 (599)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0019 Score=48.78 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+..+...|.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|+..|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444555555555554444432 11344444444444444444444444444444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00063 Score=53.81 Aligned_cols=61 Identities=15% Similarity=0.029 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34445555555555555555555554432 12444555555555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00045 Score=58.37 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 007543 395 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN----------LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAY 463 (599)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 463 (599)
+.+.+++|.+.++...+.. +-+...|..+..++...++ +++|+..|++.++. .|+ ...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 3345566666666665544 2355666666666665554 45777777777754 343 56777777777
Q ss_pred Hhc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 464 GKN-----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 464 ~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
... |++++|++.|+++++ +.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 765 478889999988888 67777666554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0026 Score=47.94 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
+...|..+...+...|++++|+..|++..+..+. +...+..+...+...|++++|.+.|++.++.. +.+...+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~ 82 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 4567888899999999999999999999876433 67788889999999999999999999998753 556778888
Q ss_pred HHHHHHHcC
Q 007543 252 MIYMYKKAG 260 (599)
Q Consensus 252 li~~~~~~g 260 (599)
+...+.+.|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888777654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=51.90 Aligned_cols=79 Identities=18% Similarity=0.101 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 121 VSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 121 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
+.+.++.+.+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566665554 4667889999999999999999999999998874 3368899999999999999999999999987
Q ss_pred hC
Q 007543 201 SS 202 (599)
Q Consensus 201 ~~ 202 (599)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=55.86 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=65.6
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 114 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF----------NKAEKVLSFMNKKGYAPSVVSHTALMEAY 183 (599)
Q Consensus 114 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 183 (599)
++..+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.... +..+|+.+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3456677777777777665 45677777777777777664 4888888887776432 567788888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 184 GRGG-----------RYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 184 ~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
...| ++++|++.|++.++ +.|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 7664 67777777777776 345544444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=50.50 Aligned_cols=65 Identities=14% Similarity=0.032 Sum_probs=48.1
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 201 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 201 (599)
.+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|++.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566777777888888888888888877776422 566777788888888888888888777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=50.11 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.+...|..+...|.+.|++++|++.|++..+..+. +...|..+..+|...|++++|.+.|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999999887544 566888899999999999999999988874
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0045 Score=62.45 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=73.4
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
..|++++|+.++++.++....-+.|+ ..+++.|...|...|++++|+.++++..+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35789999999999887544444444 46789999999999999999999988764
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++.......+-...+++.|...|...|++++|+.++++..+
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 333333222222345789999999999999999999988754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.011 Score=59.54 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=77.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 007543 214 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 289 (599)
Q Consensus 214 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 289 (599)
.+..+.+.|++++|+.++++.++....-+.|+ ..+++.|...|...|++++|+.++++...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~--------------- 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME--------------- 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34556678999999999999987544444444 46788999999999999999999987764
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 290 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 341 (599)
Q Consensus 290 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (599)
+++.......+....+++.|...|...|++++|+.++++..+
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333333222222345789999999999999999999988753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0051 Score=47.38 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=38.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 424 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
....+.+.|++++|.+.|++..+.. +.+.. .|..+..++...|++++|.+.|++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666777777777777776542 22455 667777777777777777777777766
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.041 Score=53.38 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007543 415 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 494 (599)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5578888888777777799999999999988764 7777888888888899999999999988888 67877776543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.009 Score=45.91 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 205 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 205 (599)
.....+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|++.|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34566777888888888888877763 22566 7888888888888888888888888775443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.017 Score=58.30 Aligned_cols=90 Identities=7% Similarity=-0.046 Sum_probs=69.4
Q ss_pred hcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC---CCC-HHHHHHHH
Q 007543 185 RGGRYKNAEAIFRRMQSS-----GP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL---KPD-QKMFHMMI 253 (599)
Q Consensus 185 ~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~li 253 (599)
..|++++|+.++++..+. |. .|+ ..+++.|..+|...|++++|+.+++++++....-+ .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987652 21 122 35788999999999999999999999875321111 233 46799999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 007543 254 YMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~ 274 (599)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.022 Score=57.50 Aligned_cols=61 Identities=16% Similarity=0.049 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 007543 175 SHTALMEAYGRGGRYKNAEAIFRRMQS-----SGP-RPS-ALTYQIILKLFVEANKFKEAEEVFMTLL 235 (599)
Q Consensus 175 ~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 235 (599)
+++.|...|...|++++|+.++++.+. .|. .|+ ..+++.|...|...|++++|+.++++++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444455555555555555554444432 111 111 1234444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.072 Score=44.37 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHhHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 472 (599)
....+.+.|.+..+.+ .++..+.-.+..++++.+ ++++++.+|++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666777666666 368888888889999988 6679999999988754 34 244555666778999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHH
Q 007543 473 VVWYKEMESCGFPPDQKAKNIL 494 (599)
Q Consensus 473 ~~~~~~m~~~g~~p~~~~~~~l 494 (599)
.++++.+++ +.|+..--..|
T Consensus 91 ~~y~~~lL~--ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHH
Confidence 999999998 77865433333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.72 Score=39.37 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=90.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (599)
+...+.|+++.|.++.+++ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445778899988887766 2678899999999999999999999887653 345556667778887
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 436 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
.-.++-+.....| -++.-...+.-.|+++++.+++.+.-+ .|. -+-.....|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHHHHHHh
Confidence 7766666555444 234455566778999999988866532 121 122234577788888888876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.071 Score=40.51 Aligned_cols=67 Identities=7% Similarity=-0.065 Sum_probs=39.5
Q ss_pred CCHHhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 136 FNEMDFLMLITAYGKQGD---FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.++..+..+..++...++ .++|..+|++..+.... ++.++..+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 344555555555543333 56666666666665422 55666666666666666666666666666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.45 Score=52.26 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007543 149 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 199 (599)
Q Consensus 149 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 199 (599)
...|++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443222 14445555555555555555555555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.078 Score=41.23 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=51.7
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 203 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 203 (599)
.+..++..|...+.+.|++..|...|+...+.- -.+....+..|..+|.+.|++++|+..+++..+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 567778888888888888888888888766531 12356677888888888888888888888887643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.63 Score=45.09 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC-C-HHHHH---HHHHHHHh-CCCCCCHHHHHHHHHHHHHcCC
Q 007543 154 FNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGR---GG-R-YKNAE---AIFRRMQS-SGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~g-~-~~~A~---~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
..+|..+|++..+.. |+ ...|..+.-+|.. .+ . ..... ..+..... .....+..+|..+...+...|+
T Consensus 215 ~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 215 LNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 467888888887763 33 4455444443321 11 1 01111 11111111 1124577788877777777899
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 284 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 284 (599)
+++|...+++++.. .|+...|..+...+.-.|++++|.+.|++....+ |...+|
T Consensus 293 ~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~ 346 (372)
T 3ly7_A 293 TDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTL 346 (372)
T ss_dssp HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHH
T ss_pred HHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChH
Confidence 99999999998864 3677777778888888999999999998887763 444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.2 Score=55.16 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007543 317 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 396 (599)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 396 (599)
..++..+.+.|.+++|+++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 556666677777777776543211 1123345677788777775433 3667778888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
|+++.|.+.|.++.. |..+...|...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888877653 22344444445555554444444443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.38 Score=41.09 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 007543 145 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 224 (599)
Q Consensus 145 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 224 (599)
.+...+.|+++.|.++.+++. +...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 445566788888888877662 677888888888888888888888877632 34455556667777
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 225 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
+.-.++-+.....+ -++.....+.-.|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 76666555544321 144555556667888888777754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.25 Score=37.40 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 170 APSVVSHTALMEAYGRGGR---YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 170 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
+.|...+..+..++...++ .++|..+|++..+..+. +......+...+.+.|++++|...|+.+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567777788777765544 68888888888886544 6777788888888888888888888888864
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.86 Score=36.66 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=91.5
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
+.-.|..++..++..+... +.+..-||-+|--....-+-+-..++++.+-+. -| ++.+++.+.+
T Consensus 17 ~ildG~v~qGveii~k~~~------ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD-------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK------SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD-------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH------HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcC------CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------cHhhhcHHHH
Confidence 3445777788888777764 334444555554444555555555555544321 01 2346777776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
..-+-.+- .+...+..-++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 66665542 34556677778888888888888888886543 3777888888888888888888888888888877
Q ss_pred CCC
Q 007543 378 RCS 380 (599)
Q Consensus 378 ~~~ 380 (599)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.2 Score=38.88 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG------IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
+..-+..|...+.+.|+++.|...|+...+.- -.+...++..+..++.+.|+++.|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 44445567777777777777777777766420 123355777788888888888888888888876 45554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.23 Score=41.36 Aligned_cols=82 Identities=12% Similarity=0.043 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG---RYKNAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAE 228 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~A~ 228 (599)
+..+++-|.+....|. ++..+...+.-++++.+ ++++++.+|++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 46666666666666666 4456666666666543 12 2333444445566677777777
Q ss_pred HHHHHhHhc
Q 007543 229 EVFMTLLDE 237 (599)
Q Consensus 229 ~~~~~~~~~ 237 (599)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.54 E-value=1.5 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
....++.+...|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.++++++-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444444555555555555554322 224444455555555555555555555555554444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.22 Score=46.28 Aligned_cols=80 Identities=15% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHH
Q 007543 155 NKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRG-----GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-NKFK 225 (599)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~ 225 (599)
..|+..+++..+. .|+ -..|..|...|.+. |+.++|.+.|++.++.++.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4444444444443 233 23455555555542 55555555555555433322244444444444442 5555
Q ss_pred HHHHHHHHhHh
Q 007543 226 EAEEVFMTLLD 236 (599)
Q Consensus 226 ~A~~~~~~~~~ 236 (599)
+|.+.+++.+.
T Consensus 258 ~a~~~L~kAL~ 268 (301)
T 3u64_A 258 GFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 55555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.58 Score=43.52 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc-C
Q 007543 399 MEGAEKFFRRLKQDGFVPN---VITYGTLIKGYAKV-----NNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKN-K 467 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~-g 467 (599)
...|...+++..+. .|+ ...|..|...|.+. |+.++|.+.|++.++. .| +..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45666666666654 344 55677777777774 7888888888888764 45 366777777777774 8
Q ss_pred CHhHHHHHHHHHHhCCCC
Q 007543 468 DFDSAVVWYKEMESCGFP 485 (599)
Q Consensus 468 ~~~~A~~~~~~m~~~g~~ 485 (599)
+.++|.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888774433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.79 Score=37.71 Aligned_cols=104 Identities=11% Similarity=0.104 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHhHhcc
Q 007543 172 SVVSHTALMEAYGRGGRY------KNAEAIFRRMQSSGPRPSAL----TYQIILK---LFVEANKFKEAEEVFMTLLDEE 238 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~A~~~~~~~~~~~ 238 (599)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 555666666666666666 6666666666553 333311 1111110 123447899999999999765
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007543 239 KSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 280 (599)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 280 (599)
...+ ..+|......-.+.|++..|.+++......+.+|.
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3334 88888888889999999999999999888765553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.59 E-value=0.8 Score=37.69 Aligned_cols=112 Identities=9% Similarity=0.083 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHHC
Q 007543 381 PDICSYTTMLSAYVNASDM------EGAEKFFRRLKQDGFVPNVI----TYGTLIK---GYAKVNNLEKMMEIYDKMRVN 447 (599)
Q Consensus 381 p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~~ 447 (599)
-|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|-.|.- .+...+++++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666666666 6666677666543 344321 1111111 112347889999999998754
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 448 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.-.- ..+|.....--.++|+++.|.+++.+.+..+-.| ...+...+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~ 135 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIAL 135 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHH
Confidence 2222 7788888888889999999999999998866333 33344333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.24 E-value=0.97 Score=36.10 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHhHHH
Q 007543 399 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK---MMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSAV 473 (599)
Q Consensus 399 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 473 (599)
...+.+-|.+....| .|+..+--.+..++.+..+... ++.+++...+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344444444444433 2555555556666666665444 666666665432 12 1223334445666777777777
Q ss_pred HHHHHHHhCCCCCCH
Q 007543 474 VWYKEMESCGFPPDQ 488 (599)
Q Consensus 474 ~~~~~m~~~g~~p~~ 488 (599)
++++.+++ +.|+.
T Consensus 95 ~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHH--hCCCC
Confidence 77777766 45543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.30 E-value=1.3 Score=35.29 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEE 229 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~ 229 (599)
+..+++-|.+....|. ++..+-..+.-++.+..+..+ ++.+++.+.+.+ +.-.....-.|.-++.+.|+++.|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444544444332 455555555566666555444 666666665543 10122233334445666666666666
Q ss_pred HHHHhHhc
Q 007543 230 VFMTLLDE 237 (599)
Q Consensus 230 ~~~~~~~~ 237 (599)
.++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.34 E-value=1 Score=48.32 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=41.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 460 MDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+-|...|+++.|+++.++... +.|+ -.+|..|..+|...|+++.|+-.+..+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446677888888888888877 4444 5788888888888888888888888863
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.68 E-value=6.3 Score=42.26 Aligned_cols=126 Identities=16% Similarity=0.049 Sum_probs=81.6
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHh-------CCCCCCHH-
Q 007543 142 LMLITAYGKQGD-FNKAEKVLSFMNKKGYAPSVVSH--TALMEAYGRGG-RYKNAEAIFRRMQS-------SGPRPSAL- 209 (599)
Q Consensus 142 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g-~~~~A~~l~~~m~~-------~g~~p~~~- 209 (599)
..|+..+...|+ ++.|..+|+++.+.. |....+ ..++..+.+.+ +--+|.+++.+..+ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 356666666666 588999999998873 433332 23333333332 23345555544432 11111211
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007543 210 ---------TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 210 ---------t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
....-.+.|...|+++.|+++-++.+... +.+-.+|..|..+|.+.|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222345677899999999999998642 6678999999999999999999999998874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.13 E-value=4 Score=40.18 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 007543 423 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKNI 493 (599)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 493 (599)
.++..+...|+.+++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+. +.|+.|...+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34555556666666666666655432 3345566666666666666666666666553 2466666655433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.11 E-value=2.8 Score=41.29 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 316 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666777788888877777776654 55677777777788888887777777776543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.86 E-value=25 Score=40.07 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..-|..++..+.+.+.++.+.++-...++....+ .++ ...|..+.+.+...|++++|...+-.+...
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 3446667777777777777777666665432111 111 124666777777777777777766666543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.16 E-value=2 Score=36.01 Aligned_cols=31 Identities=6% Similarity=0.002 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 244 PDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+...---+..+|.+.+++++|+.+++.+..
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3445555688899999999999999877644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.03 E-value=10 Score=30.38 Aligned_cols=74 Identities=8% Similarity=0.006 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 414 FVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 414 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
-.|+..+--.+..++.+..+ ..+++.+++++.+.+-.-....+--+.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 35666666666777777664 345777777777543111233455566677888888888888888877 566653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.75 E-value=31 Score=34.50 Aligned_cols=93 Identities=6% Similarity=0.073 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC--HHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQ--DGFVPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN--QTI 455 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 455 (599)
..|...|...|++.+|.+++..+.. .+.... ...|...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3444555556666666666665542 111111 22344455555566666666665555431 111222 123
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 456 FTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|...+..+...++|.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555556666555555554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.70 E-value=37 Score=35.48 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=128.4
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 123 EVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++..++.....++.....-..-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 45555555544433333334455666677777766665443 1335555555666777778877777766666555
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHhHhccC--------CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 203 GPRPSALTYQIILKLFVEANKFKE--AEEVFMTLLDEEK--------SPLKPDQ-KMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 203 g~~p~~~t~~~ll~~~~~~g~~~~--A~~~~~~~~~~~~--------~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
|.. .+.....++..+.+.|.+.. ..+=++.++..+. ..++++. .....++..+.+-..+ .....
T Consensus 132 ~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~- 206 (618)
T 1qsa_A 132 GKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFAR- 206 (618)
T ss_dssp SSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHH-
T ss_pred CCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHh-
Confidence 432 33345566666665554322 2222222222100 0001111 1111122111111111 11110
Q ss_pred HHHcCCCCCHHHHHHHh----c-ccCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHC
Q 007543 272 MAERGVQQSTVTYNSLM----S-FETNYKEVSKIYDQMQRAGLQPDVVSYA----LLINAYGKARREEEALAVFEEMLDA 342 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll----~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~ 342 (599)
. ..++...-..+. . ...+.+.|...+....+.. ..+..... .+...+...+...++...+......
T Consensus 207 --~--~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~ 281 (618)
T 1qsa_A 207 --T--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR 281 (618)
T ss_dssp --H--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT
T ss_pred --c--cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc
Confidence 0 112221111111 1 2346677777777776543 22332222 2222233334244555555555443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 007543 343 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 411 (599)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (599)
..+.....-.+....+.|+++.|...|+.|..... .......-+..++...|+.++|..+|..+.+
T Consensus 282 --~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 --SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp --CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 23333333333444566888888888887765321 2344444555677778888888888887764
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.53 E-value=9.8 Score=28.62 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=62.3
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
....+.++|.-+-+|+...+. .+.+--.-+..+.+.|++++|..+.+.+. .||.+.|-+|... +.|..+++
T Consensus 18 TG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 88 (116)
T 2p58_C 18 TGNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSAL 88 (116)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345678899999999998762 22333344567788999999999887766 5899999888654 78888888
Q ss_pred HHHHHHHHhCC
Q 007543 193 EAIFRRMQSSG 203 (599)
Q Consensus 193 ~~l~~~m~~~g 203 (599)
...+.++..+|
T Consensus 89 e~rL~~la~sg 99 (116)
T 2p58_C 89 ESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 88887887765
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.36 E-value=9.3 Score=28.70 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=65.1
Q ss_pred hhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 113 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 192 (599)
Q Consensus 113 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 192 (599)
....+.++|.-+-+|+...+. .+.+--.-+..+.+.|++++|..+.+.+. .||.+.|-+|... +.|..+++
T Consensus 17 TG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~l 87 (115)
T 2uwj_G 17 SGQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAAL 87 (115)
T ss_dssp HTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHH
Confidence 345678899999999998762 22333344567788999999998877665 5899999888654 78888888
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 007543 193 EAIFRRMQSSGPRPSALTY 211 (599)
Q Consensus 193 ~~l~~~m~~~g~~p~~~t~ 211 (599)
..-+.++..+| .|....|
T Consensus 88 e~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHH
Confidence 88888887776 3333333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.97 E-value=9.1 Score=28.94 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.=+..+-++.+....+.|++.+..+.+.+|.|.+++..|.++++-...
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555566667777777777777777777777777766643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.55 E-value=18 Score=41.39 Aligned_cols=142 Identities=10% Similarity=0.026 Sum_probs=74.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC---------------
Q 007543 354 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF--------------- 414 (599)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--------------- 414 (599)
++..+.+.+..+-+.++..-. +.++..-..+..+|...|++++|...|++.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444445555555444433221 223333334445666666666666666654210 00
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 007543 415 ---VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 487 (599)
Q Consensus 415 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 487 (599)
..-..-|..++..+.+.+.++.+.++-+...+..-.-+. ..|..+..++...|++++|...+-.+.... --
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LK 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SC
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HH
Confidence 011233566677777777777777776665542111111 256777777777788877777777665532 23
Q ss_pred HHHHHHHHHHHhhcC
Q 007543 488 QKAKNILLSLAKTAD 502 (599)
Q Consensus 488 ~~~~~~ll~~~~~~g 502 (599)
......|+..++..|
T Consensus 971 ~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCC
Confidence 344555555444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=81.98 E-value=7.7 Score=29.34 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 398 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-.+.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44455566666666666777777777777777777777777777776632 1223345555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.19 E-value=22 Score=28.85 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 007543 415 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 489 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 489 (599)
.|+..+--.+..++.+..+ ..+++.+++++...+-.-.....-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 5677776677778887765 456778888877642111223444556678899999999999999988 677653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 599 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-05 | |
| d1qkla_ | 127 | a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 53/343 (15%), Positives = 108/343 (31%), Gaps = 19/343 (5%)
Query: 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY-GRGGRYKNAEAIFRRM 199
L+L + + + +++ ++ + L EAY G YK + +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHF--------STLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87
Query: 200 QSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 259
+ I + + A + PD + KA
Sbjct: 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147
Query: 260 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA-GLQPDVV-SYA 317
G + K L A V +++L E+ ++A L P+ + +Y
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207
Query: 318 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF-KCMRR 376
L N +AR + A+A + L + L + G++D A + + +
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 377 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK 436
PD +Y + +A + AE + + L + N+E+
Sbjct: 267 QPHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEE 323
Query: 437 MMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKE 478
+ +Y K + P + + + A++ YKE
Sbjct: 324 AVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 5e-05
Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 16/237 (6%)
Query: 127 WLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG 186
+L+ + + L + QG+ A + ++ L
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEA 216
Query: 187 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ 246
+ A A + R S P A+ + + ++ E A + + ++ L+P
Sbjct: 217 RIFDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHF 270
Query: 247 KMFHMMI-YMYKKAGGYEKARKLF--ALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 303
+ + K+ G +A + AL S ++ + N +E ++Y +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 304 MQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAF 358
+ P+ +++ L + + + +EAL ++E + + PT AY+ + +
Sbjct: 331 ALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383
|
| >d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RPB6/omega subunit-like superfamily: RPB6/omega subunit-like family: RPB6 domain: RPB6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (84), Expect = 0.002
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 531 DEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAE 565
D ED+ D DD DD + D + ++ +++ E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVE 37
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 599 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.16 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.39 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.35 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.27 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.24 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.78 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.74 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.7 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.49 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.3 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.2 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.05 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.7 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.76 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.74 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.77 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.55 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.94 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.3e-20 Score=183.77 Aligned_cols=370 Identities=14% Similarity=0.124 Sum_probs=168.2
Q ss_pred cccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007543 115 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 194 (599)
Q Consensus 115 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 194 (599)
.|+++.|.+.++.+.+.. |.++..+..+..+|.+.|++++|...|++..+... -+..+|..+...|.+.|++++|++
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccccc
Confidence 345555555555554433 23444455555555555555555555555544421 234455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 195 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 195 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
.+....+.... +..............+....+........... .................+....+...+.+...
T Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 89 HYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccc----cccccccccccccccccchhhhhHHHHHHhhc
Confidence 55555443222 33333333333334444444333333332211 22233333344444444555555554444443
Q ss_pred cCCCCCH-HHHHHH---hcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007543 275 RGVQQST-VTYNSL---MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 350 (599)
Q Consensus 275 ~g~~~~~-~~~~~l---l~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (599)
.. |+. ..+..+ ....+++++|...++...... +-+...+..+...+...|++++|...+++....+ +.+...
T Consensus 164 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 164 TQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred cC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 31 111 111111 112344555555555444432 1233444445555555555555555555544433 334444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 007543 351 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 430 (599)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 430 (599)
+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...+.+
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHH
Confidence 4445555555555555555555544431 2234444445555555555555555555444332 3344444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 007543 431 VNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTAD 502 (599)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 502 (599)
.|++++|.+.|++..+. .|+ ..+|..+..+|.+.|++++|...|++..+ +.|+ ...|..+..++.+.|
T Consensus 318 ~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 55555555555554432 222 33444555555555555555555555544 2332 334444444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.8e-19 Score=178.40 Aligned_cols=364 Identities=13% Similarity=0.060 Sum_probs=302.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 223 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 223 (599)
+...+.+.|++++|.+.|+++.+.. +-+..+|..+...|.+.|++++|+..|++..+..+. +..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 5677889999999999999998874 336889999999999999999999999999887544 67889999999999999
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHH
Q 007543 224 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIY 301 (599)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~~~a~~~~ 301 (599)
+++|.+.+....+.. +.+..............+....+........................ .......+...+
T Consensus 83 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 999999999998653 55666666677777777777777777776665544444444333322 356777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007543 302 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 381 (599)
Q Consensus 302 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (599)
....... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..... +.
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 7777654 3466788889999999999999999999998865 5567789999999999999999999999988754 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 461 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (599)
+...+..+...+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 67888889999999999999999999998865 3468889999999999999999999999988653 556789999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCcHHHHHHHHHhccCCCCC
Q 007543 462 AYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADERNEANELLGNFNHPNNE 520 (599)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 520 (599)
.+.+.|++++|++.+++..+ +.| +..++..+..++...|++++|...+++..+.++.
T Consensus 314 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988 445 4567888999999999999999999998766543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.6e-12 Score=125.80 Aligned_cols=243 Identities=13% Similarity=0.060 Sum_probs=128.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.....+.+.|++++|...|+++.+... -+..+|..+..+|...|++++|+..|.+..+..+. +...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 456667778888888888888877642 25777888888888888888888888887765433 5667777777777788
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 302 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~ 302 (599)
++++|.+.++.++... |+........................... ...+.+.++.+.+.
T Consensus 102 ~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT-----PAYAHLVTPAEEGAGGAGLGPSKRILGSL----------------LSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS-----TTTGGGCC---------------CTTHHH----------------HHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc-----cchHHHHHhhhhhhhhcccccchhhHHHH----------------HHhhHHHHHHHHHH
Confidence 8888887777776432 11100000000000000000000000000 00112233333443
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007543 303 QMQRAGL-QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 381 (599)
Q Consensus 303 ~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (599)
...+... ..+..++..+...+...|++++|+..|++..... +-+..+|..+...|.+.|++++|...|++..+.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 3333211 1234455555555566666666666666555443 3344555555555556666666666555555431 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007543 382 DICSYTTMLSAYVNASDMEGAEKFFRRLK 410 (599)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 410 (599)
+..+|..+..+|.+.|++++|+..|++.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.7e-12 Score=124.09 Aligned_cols=244 Identities=12% Similarity=0.022 Sum_probs=174.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK 257 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (599)
.....+.+.|++++|+..|+++++..+. +..+|..+..++...|++++|...|.++++.. +.+...+..+...|.
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK----PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc----ccccccccccccccc
Confidence 4566788999999999999999987654 78899999999999999999999999998753 556788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007543 258 KAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 337 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (599)
..|++++|.+.+++..... |+..... .. ... .. ...+.......+..+...+...+|...|.
T Consensus 99 ~~~~~~~A~~~~~~~~~~~--~~~~~~~---~~---~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYT--PAYAHLV---TP---AEE-------GA---GGAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGC---C----------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhc--cchHHHH---Hh---hhh-------hh---hhcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 9999999999999987642 2211000 00 000 00 00011111112233344556677888877
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 007543 338 EMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 416 (599)
Q Consensus 338 ~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 416 (599)
+..+... ..+..++..+...+...|++++|...|++..... +-+...|..+...|...|++++|.+.|++..+.. +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 7765431 2456677778888888888888888888876643 3356777778888888888888888888877653 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRV 446 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (599)
+..+|..+..+|.+.|++++|++.|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566777888888888888888888887764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.8e-08 Score=97.39 Aligned_cols=305 Identities=9% Similarity=0.016 Sum_probs=193.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCCHHHHHHH
Q 007543 179 LMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPDQKMFHMM 252 (599)
Q Consensus 179 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l 252 (599)
....+...|++++|++++++..+..+..+ ..++..+...+...|++++|...|++.++.... ........+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34455666677777777666655432222 234555566666777777777777666542110 001112345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007543 253 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 332 (599)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (599)
...+...|++..|...+.+.... ...............+..+...+...|+++.+
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~-------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQL-------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence 77788888888888887765432 11100000011123456677788899999999
Q ss_pred HHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHH
Q 007543 333 LAVFEEMLDAG----VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPD----ICSYTTMLSAYVNASDMEGA 402 (599)
Q Consensus 333 ~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A 402 (599)
...+....... .......+......+...++..++...+.+.... ..... ...+..+...+...|+.++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 153 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 99998876542 2223456666777788889999998888765442 11111 23455666678899999999
Q ss_pred HHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHhcCCHhHHHH
Q 007543 403 EKFFRRLKQDGFV---PNVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN-QTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 403 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 474 (599)
...++........ .....+..+...+...|++++|.+.+++... .+..|+ ...+..+...|.+.|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999987754322 2345567788899999999999999998763 344554 4478888899999999999999
Q ss_pred HHHHHHh----CCCCC----CHHHHHHHHHHHhhcCcHHHHH
Q 007543 475 WYKEMES----CGFPP----DQKAKNILLSLAKTADERNEAN 508 (599)
Q Consensus 475 ~~~~m~~----~g~~p----~~~~~~~ll~~~~~~g~~~~A~ 508 (599)
.+++..+ .|... ....+..++..+...++.+++.
T Consensus 313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9998754 22211 1123344555555666655554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.9e-08 Score=95.79 Aligned_cols=306 Identities=9% Similarity=0.019 Sum_probs=202.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----ALTY 211 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~ 211 (599)
.......+...|++++|.++|++..+.....+ ..+++.+...|...|++++|+..|++..+.... ++ ..++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33456778899999999999999887632211 346788889999999999999999988653211 12 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhcc---CCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 212 QIILKLFVEANKFKEAEEVFMTLLDEE---KSPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 287 (599)
Q Consensus 212 ~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 287 (599)
..+...+...|++..+...+...+... .....+ ....+..+...+...|+++.+...+..........
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 166 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------- 166 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh--------
Confidence 666778889999999999988776421 111111 22456667888899999999999988876542111
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHHc
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG--VRPT----HKAYNILLDAFAIS 361 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~~li~~~~~~ 361 (599)
+.......+..+...+...++...+...+.+..... .... ...+..+...+...
T Consensus 167 --------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 167 --------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp --------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 111233455556667777888888877777654321 1111 22455666677888
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HHHHHHHHHHHHhcCC
Q 007543 362 GMVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVPN-VITYGTLIKGYAKVNN 433 (599)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~ 433 (599)
|++++|...++......... ....+..+...+...|++++|...++++.. .+..|+ ..++..+...|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 89999998888766542221 234566677888899999999999888753 233333 4567788889999999
Q ss_pred HHHHHHHHHHHHHC----CCCc----CHHHHHHHHHHHHhcCCHhHHHH
Q 007543 434 LEKMMEIYDKMRVN----GIKP----NQTIFTTIMDAYGKNKDFDSAVV 474 (599)
Q Consensus 434 ~~~A~~~~~~m~~~----~~~p----~~~~~~~li~~~~~~g~~~~A~~ 474 (599)
+++|.+.+++..+. |... ....+..++..+...++.+++.+
T Consensus 307 ~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999887642 2110 11233444555555566555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=8.5e-09 Score=98.44 Aligned_cols=131 Identities=5% Similarity=-0.007 Sum_probs=104.6
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILKL 217 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 217 (599)
..|+.+...+.+.+.+++|+++++++.+..+. +..+|+....++...|+ +++|++.+++..+..+. +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 34556667778888888888888888887533 67788888888887764 88888888888876554 67788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
+.+.|++++|++.+.++++.+ +.+..+|..+...+.+.|++++|+..|+++.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d----p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhh----hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888754 567888888888888888888888888888775
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1e-08 Score=97.87 Aligned_cols=216 Identities=7% Similarity=0.041 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 007543 173 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHM 251 (599)
Q Consensus 173 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 251 (599)
..+|+.+...+.+.+.+++|+++++++++..+. +...|+....++...| ++++|+..++.+++.+ +-+..+|+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~----p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH----HhhhhHHHH
Confidence 457777888888899999999999999987554 6778888888888876 4899999999998754 667889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 252 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 331 (599)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (599)
+...+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~d---------------------------------p~n~~a~~~~~~~~~~~~~~~~ 164 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQD---------------------------------AKNYHAWQHRQWVIQEFKLWDN 164 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhh---------------------------------hcchHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999888887641 3467788888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 332 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGM------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
|+..++++++.+ +.+...|+.+...+.+.+. +++|+..+.+..+.. +.+...|+.+...+.. ...+++.+.
T Consensus 165 Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~ 241 (315)
T d2h6fa1 165 ELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNL 241 (315)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHH
T ss_pred HHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHH
Confidence 999999988875 5567778777666666554 567777777766643 3356666666555443 334566666
Q ss_pred HHHHhhCCCC-CCHHHHHHHHHHHH
Q 007543 406 FRRLKQDGFV-PNVITYGTLIKGYA 429 (599)
Q Consensus 406 ~~~m~~~~~~-p~~~~~~~li~~~~ 429 (599)
++...+.... .+...+..++..|.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 242 LNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 6665543222 23445555555553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=3.3e-08 Score=93.99 Aligned_cols=187 Identities=10% Similarity=0.111 Sum_probs=146.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007543 327 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 406 (599)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 406 (599)
+..++|..+|++.++...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578889999988765566777888888899999999999999999887543333557888999999999999999999
Q ss_pred HHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-C
Q 007543 407 RRLKQDGFVPNVITYGTLIKG-YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-F 484 (599)
Q Consensus 407 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 484 (599)
+++.+.+. .+...|...... +...|+.+.|.++|+.+.+. .+.+...|..+++.+.+.|+++.|..+|++..+.. .
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99887653 344445444443 34468899999999999875 34457789999999999999999999999987743 3
Q ss_pred CCC--HHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 485 PPD--QKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 485 ~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.|+ ...|...+..-...|+.+.+..+.+++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 3578888888888999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=8.6e-08 Score=91.06 Aligned_cols=186 Identities=15% Similarity=0.161 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 154 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT 233 (599)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 233 (599)
.++|..+|++..+...+.+...|...+..+.+.|++++|..+|+++.+..+......|...+..+.+.|+.+.|.++|..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555555555543333344455555555555555555555555555443332233455555555555555555555555
Q ss_pred hHhccCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCC
Q 007543 234 LLDEEKSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPD 312 (599)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~ 312 (599)
+++.. +.+...|...+.. +...|+.+.|..+|+.+.+. .+.+
T Consensus 160 al~~~----~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~---------------------------------~p~~ 202 (308)
T d2onda1 160 AREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---------------------------------YGDI 202 (308)
T ss_dssp HHTST----TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---------------------------------HTTC
T ss_pred HHHhC----CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---------------------------------hhhh
Confidence 54321 1222222222221 11223444444444433321 1234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 313 VVSYALLINAYGKARREEEALAVFEEMLDAG-VRP--THKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
...|...+..+.+.|+++.|..+|++.++.. ..| ....|...+..-...|+.+.+..+++++.+
T Consensus 203 ~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666655542 122 133555555555555666666666655543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=2.3e-09 Score=103.66 Aligned_cols=233 Identities=9% Similarity=0.019 Sum_probs=147.5
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 220 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG--YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
..|++++|+..++.+++.. +.+...|..+..++...++ +++|...+.++.+..
T Consensus 85 ~~~~~~~al~~~~~~l~~~----pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------------------- 139 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN----PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------------------- 139 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHhC----CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---------------------
Confidence 3444566666777666533 4455666666555555443 566666666655431
Q ss_pred HHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007543 298 SKIYDQMQRAGLQPDVVSYA-LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 376 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (599)
+++...+. .....+...+.+++|+..++.+++.. +-+...|+.+...+.+.|++++|...++...+
T Consensus 140 ------------~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~ 206 (334)
T d1dcea1 140 ------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN 206 (334)
T ss_dssp ------------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH
T ss_pred ------------chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 22344443 33455666777888888888777765 45677777777788888877766555543332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 007543 377 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF 456 (599)
Q Consensus 377 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 456 (599)
. .| ....+...+...+..+++...+....... +++...+..++..+...|+.++|...+.+..+.. +-+..+|
T Consensus 207 ~--~~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~ 279 (334)
T d1dcea1 207 V--LL---KELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTI 279 (334)
T ss_dssp H--HH---HHHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred h--HH---HHHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHH
Confidence 1 11 11223334455566667777777766554 3455556667777778888888888888877542 2235577
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHh
Q 007543 457 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK-AKNILLSLAK 499 (599)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~ 499 (599)
..+..++...|++++|++.++++.+ +.|+.. .|..|...+.
T Consensus 280 ~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 280 ILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence 8888889999999999999999988 567554 4555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=3.9e-08 Score=90.69 Aligned_cols=131 Identities=11% Similarity=-0.040 Sum_probs=103.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 218 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 218 (599)
..|..+..+|.+.|++++|.+.|++..+... -++.+|+.+..+|.+.|++++|++.|++..+..+. +..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence 4677888999999999999999999988743 37889999999999999999999999999986544 567788888999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 219 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
...|++++|.+.|+..++.. +.+......+...+.+.+..+.+..+.......
T Consensus 116 ~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 99999999999999998753 445555555555566666666665555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=2.1e-08 Score=92.61 Aligned_cols=168 Identities=13% Similarity=0.030 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007543 312 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 391 (599)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 391 (599)
+..+|..+..+|.+.|++++|+..|+++++.. +.+..++..+..+|...|++++|...|+...+.. +.+......+..
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 147 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYL 147 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHH
Confidence 34455555555555555555555555555543 2334455555555555566666665555555432 223333333333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhc
Q 007543 392 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV----NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKN 466 (599)
Q Consensus 392 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 466 (599)
++.+.+..+.+..+..........+ ..++ ++..+... +..+.+...+..... ..|+ ..+|..+...+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~ 222 (259)
T d1xnfa_ 148 AEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSL 222 (259)
T ss_dssp HHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHC
Confidence 3444444444444444333322111 1111 11111111 112222222211111 1122 23566677777788
Q ss_pred CCHhHHHHHHHHHHhCCCCCCH
Q 007543 467 KDFDSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 467 g~~~~A~~~~~~m~~~g~~p~~ 488 (599)
|++++|.+.|++.++ ..|+.
T Consensus 223 g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 223 GDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp TCHHHHHHHHHHHHT--TCCTT
T ss_pred CCHHHHHHHHHHHHH--cCCCC
Confidence 888888888888776 34543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=9.5e-09 Score=99.16 Aligned_cols=113 Identities=8% Similarity=-0.071 Sum_probs=69.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPSALTY-QIILKLFVEANKFKEA 227 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~A 227 (599)
.|++++|+.+|+...+.. +.+...|..+..++...++ +++|+..+.++.+..+. +...+ ......+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHH
Confidence 344667777777766653 2366667766666666553 67777777777665332 34443 3344555566777777
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 269 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 269 (599)
...++.+++.+ +.+...|+.+...+.+.|++++|...+
T Consensus 164 l~~~~~~i~~~----p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 164 LAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp HHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77777776433 456667777777777777766654433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.1e-06 Score=82.21 Aligned_cols=196 Identities=14% Similarity=0.041 Sum_probs=113.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 007543 320 INAYGKARREEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRD----RC-SPDICSYTTM 389 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l 389 (599)
...|...|++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|...+++..+. +. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566777777777777766432 1111 1235666777777777777777777765432 10 0112344555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----CH-HHHH
Q 007543 390 LSAYVN-ASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-----NQ-TIFT 457 (599)
Q Consensus 390 i~~~~~-~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~ 457 (599)
...|.. .|++++|.+.+++..+ .+-.+ -..++..+...|...|++++|.+.|++........ .. ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 555543 5788888888877643 11111 13456777788888888888888888877532111 11 1334
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhh--cCcHHHHHHHHHhccCC
Q 007543 458 TIMDAYGKNKDFDSAVVWYKEMESCGFPPD------QKAKNILLSLAKT--ADERNEANELLGNFNHP 517 (599)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~ 517 (599)
..+..+...|+++.|.+.+++..+. .|+ ......++.++.. .+.+++|...++++.+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 4455566778888888888887663 332 1234445555544 34577777777665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.1e-06 Score=71.22 Aligned_cols=141 Identities=15% Similarity=0.073 Sum_probs=98.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007543 356 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 435 (599)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 435 (599)
..+...|++++|++.|+++. +|+..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 34566777888877776542 4567777777777888888888888888777665 336777777888888888888
Q ss_pred HHHHHHHHHHHCC--------------CCcC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007543 436 KMMEIYDKMRVNG--------------IKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 500 (599)
Q Consensus 436 ~A~~~~~~m~~~~--------------~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 500 (599)
+|.+.|++..... ..++ ..++..+..++.+.|++++|.+.++...+ +.|+. .
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~--~~~~~-----------~ 154 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP-----------R 154 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG-----------G
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCc-----------c
Confidence 8888887776421 0111 24566677788899999999999988877 44542 4
Q ss_pred cCcHHHHHHHHHhc
Q 007543 501 ADERNEANELLGNF 514 (599)
Q Consensus 501 ~g~~~~A~~~~~~~ 514 (599)
.+..+.|...+.+.
T Consensus 155 ~~~~~~Al~~~~~~ 168 (192)
T d1hh8a_ 155 HSKIDKAMECVWKQ 168 (192)
T ss_dssp GGHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhh
Confidence 44556666665553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=8.5e-06 Score=70.73 Aligned_cols=124 Identities=13% Similarity=-0.012 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007543 320 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 399 (599)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 399 (599)
...+...|+++.|++.|.++. +|+..+|..+...|...|++++|+..|++.++.. +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445678888999988887642 6777888888888999999999999999888764 44677888888888899999
Q ss_pred HHHHHHHHHHhhCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 400 EGAEKFFRRLKQDGF--------------VP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 400 ~~A~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (599)
++|++.|++...... .+ ...++..+..++.+.|++++|.+.+....+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988888764311 11 13556678888999999999999999988653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.4e-06 Score=69.13 Aligned_cols=121 Identities=17% Similarity=0.043 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007543 142 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 221 (599)
Q Consensus 142 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 221 (599)
....+.|.+.|++++|...|++..+... .+...|..+..+|...|++++|++.|++.++..+. +..+|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHc
Confidence 3456788899999999999999998753 47889999999999999999999999999886544 778899999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHH
Q 007543 222 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKL 268 (599)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~ 268 (599)
|++++|...+++.+... +.+...+..+..+ ..+.+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999998653 3445555444333 2333344445443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=4.6e-06 Score=77.95 Aligned_cols=208 Identities=12% Similarity=0.045 Sum_probs=131.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHH
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKK----GYAP-SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-----PSALT 210 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t 210 (599)
|....+.|...|++++|.+.|.+..+. +-.+ -..+|+.+..+|.+.|++++|++.+++..+.-.. ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445677899999999999999987652 1111 2457899999999999999999999987542111 11345
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHhHhccC-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007543 211 YQIILKLFVE-ANKFKEAEEVFMTLLDEEK-SPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 287 (599)
Q Consensus 211 ~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 287 (599)
+..+...|.. .|++++|.+.|.+..+... .+.++ -..++..+...|.+.|++++|+..|+++..........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~----- 194 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS----- 194 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh-----
Confidence 5566666644 6999999999988864211 11111 13557888999999999999999998877642111100
Q ss_pred hcccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHH--
Q 007543 288 MSFETNYKEVSKIYDQMQRAGLQPDV-VSYALLINAYGKARREEEALAVFEEMLDAGVR-PT---HKAYNILLDAFAI-- 360 (599)
Q Consensus 288 l~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~---~~~~~~li~~~~~-- 360 (599)
.... ..+...+..+...|+++.|...+++..+.... ++ ......++.++-.
T Consensus 195 ----------------------~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 195 ----------------------QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (290)
T ss_dssp ----------------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred ----------------------hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence 0011 12334444566778888888888887654311 11 2234455555544
Q ss_pred cCCHHHHHHHHHHHH
Q 007543 361 SGMVDQARTVFKCMR 375 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~ 375 (599)
.+.+++|+..|+++.
T Consensus 253 ~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 253 SEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 234677777666544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.6e-06 Score=64.92 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.-.+.+.+.|++++|...|++..+... .+...|..+..+|...|++++|+..+.+..+.++. +...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHcc
Confidence 345667778888888888888777643 36777888888888888888888888888776543 6777777888888888
Q ss_pred CHHHHHHHHHHhHhc
Q 007543 223 KFKEAEEVFMTLLDE 237 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~ 237 (599)
++++|+..|+..++.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888888753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=0.00028 Score=64.21 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 007543 139 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQS 201 (599)
Q Consensus 139 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 201 (599)
..+..|...+.+.|++++|.+.|++..+.| +..++..|...|.. ..++..|...+.....
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 344444444455555555555555555443 44444444444443 3344444444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=7.2e-06 Score=64.70 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=65.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 007543 390 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 469 (599)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 469 (599)
...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|+..+.+..+.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 345666777777777777776654 3466677777777777777777777777777543 34566777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCH
Q 007543 470 DSAVVWYKEMESCGFPPDQ 488 (599)
Q Consensus 470 ~~A~~~~~~m~~~g~~p~~ 488 (599)
++|+..+++..+ +.|+.
T Consensus 88 ~~A~~~~~~a~~--~~p~~ 104 (117)
T d1elwa_ 88 EEAKRTYEEGLK--HEANN 104 (117)
T ss_dssp HHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 777777777776 44544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=6.9e-06 Score=71.75 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 007543 171 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 250 (599)
Q Consensus 171 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 250 (599)
|++..+......|.+.|++++|+..|.+.+...+. +...|..+..+|.+.|++++|+..|+.+++.+ +-+..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~----p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC----CCcHHHHH
Confidence 44455555555556666666666666655554332 45555555566666666666666666655322 33455556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007543 251 MMIYMYKKAGGYEKARKLFALMA 273 (599)
Q Consensus 251 ~li~~~~~~g~~~~A~~~~~~m~ 273 (599)
.+..+|.+.|++++|+..|++..
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.1e-05 Score=65.86 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 007543 389 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 468 (599)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (599)
....|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|.+.|++.++.+ +-+...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3456778888888888888888765 4478888888888889999999999999888653 3346788888888999999
Q ss_pred HhHHHHHHHHHHhCCCCCC-HHHHHHHHHH--HhhcCcHHHHHH
Q 007543 469 FDSAVVWYKEMESCGFPPD-QKAKNILLSL--AKTADERNEANE 509 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~g~~~~A~~ 509 (599)
+++|...+++... +.|+ ...+..+..+ ....+.+++|..
T Consensus 94 ~~eA~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988887 3454 3444443333 223344455543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=2.9e-06 Score=74.27 Aligned_cols=99 Identities=12% Similarity=-0.032 Sum_probs=85.4
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
|+...+....+.|.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 445556677889999999999999999988875 347889999999999999999999999999875433 677899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 007543 216 KLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~ 236 (599)
.+|...|++++|...|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.19 E-value=0.002 Score=58.15 Aligned_cols=112 Identities=14% Similarity=0.010 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCH
Q 007543 363 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNL 434 (599)
Q Consensus 363 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~ 434 (599)
....+...+...... .+...+..+...|.. ..+...+...++...+.| +......|...|.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 455555555554443 245555555555554 345666666666666543 55555555555554 4578
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCC
Q 007543 435 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 483 (599)
++|...|++..+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 199 ~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 88888888877765 44555556655554 346777888888777655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.15 E-value=1.2e-05 Score=62.76 Aligned_cols=90 Identities=8% Similarity=-0.051 Sum_probs=54.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.+...+.+.|++++|...|++..+... -+..+|..+..++.+.|++++|+..|++..+..+. +..++..+...|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence 445556666666666666666665532 25666666666666666666666666666654332 4555666666666666
Q ss_pred CHHHHHHHHHHh
Q 007543 223 KFKEAEEVFMTL 234 (599)
Q Consensus 223 ~~~~A~~~~~~~ 234 (599)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 666666666554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=1.1e-05 Score=62.89 Aligned_cols=91 Identities=9% Similarity=-0.084 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH
Q 007543 178 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK 257 (599)
Q Consensus 178 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (599)
.+...+.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|+..|+++++.+ +.+..++..+...|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc----cccccchHHHHHHHH
Confidence 4566677888888888888888876544 67788888888888888888888888887654 556788888888888
Q ss_pred HcCCHHHHHHHHHHHH
Q 007543 258 KAGGYEKARKLFALMA 273 (599)
Q Consensus 258 ~~g~~~~A~~~~~~m~ 273 (599)
..|++++|++.+++.+
T Consensus 96 ~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 96 NEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHh
Confidence 8888888888887753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=8.3e-06 Score=64.67 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 007543 388 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAY 463 (599)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 463 (599)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+++|+++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45566666677777777777776654 3466666667777765443 3457777777665432233 23566677777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 007543 464 GKNKDFDSAVVWYKEMESCGFPPDQKA 490 (599)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~g~~p~~~~ 490 (599)
.+.|++++|++.|+++++ +.|+..-
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 777777777777777776 4565443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.9e-05 Score=61.43 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=69.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR---YKNAEAIFRRMQSSGPRPS-ALTYQIILKLF 218 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~ 218 (599)
.|++.+...+++++|++.|++....+. .+..++..+..++.+.++ +++|+.+|+++...++.|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 567777788888888888888887653 377888888888876554 4468888888876554443 23667777888
Q ss_pred HHcCCHHHHHHHHHHhHhc
Q 007543 219 VEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~ 237 (599)
.+.|++++|.+.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 8888888888888888764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.0002 Score=60.24 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=73.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYA-P-------------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 208 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 208 (599)
...+.|.+.|++++|...|.+....-.. + -..+|+.+..+|.+.|++++|+..+++.+...+. +.
T Consensus 18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~ 96 (170)
T d1p5qa1 18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NE 96 (170)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-ch
Confidence 4456677777888888877766543110 0 1245666777778888888888888877775433 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 007543 209 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 259 (599)
Q Consensus 209 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (599)
.+|..+..+|...|++++|...|+.+++.+ |.|..+...+.....+.
T Consensus 97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 97 KGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 777777788888888888888888877643 33555555544444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00022 Score=60.00 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSL 497 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~ 497 (599)
.+|+.+..+|.+.|++++|+..+++.++.+ +.+...|..+..+|...|++++|+..|++..+ +.|+ ......+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 356667788888888888888888888653 33577888888888888888888888888877 4554 3444444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00019 Score=57.19 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---cC-HHHHHHHH
Q 007543 387 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IK---PN-QTIFTTIM 460 (599)
Q Consensus 387 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---p~-~~~~~~li 460 (599)
..+...+.+.|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|.+.++++++.. .. +. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344556667777777777777776654 3366677777777777777777777777766421 00 11 23566666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 461 DAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
..+...+++++|+.+|++... ..++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 115 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA--EHRTPDVL 115 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh--cCCCHHHH
Confidence 777777777777777777765 34554433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.80 E-value=0.014 Score=54.19 Aligned_cols=276 Identities=14% Similarity=0.155 Sum_probs=147.6
Q ss_pred hhhcccHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007543 112 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 191 (599)
Q Consensus 112 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 191 (599)
+-+.+.++.|..++..+ ..|..++.+|.+.+++..|.+++.+.. +..+|..+...+.+......
T Consensus 24 c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 24 CYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp -----CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHH
Confidence 33455666666655322 235677888888888888887776542 67788888888887776654
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007543 192 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 271 (599)
Q Consensus 192 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (599)
| .+.......++.....++..|-..|.+++...+++..+... ..+...++-++..|++.+. ++ +.+.
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~----~~~~~~~~~L~~lyak~~~-~k---l~e~ 154 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKFKP-QK---MREH 154 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHHHHHTTCH-HH---HHHH
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC----ccchHHHHHHHHHHHHhCh-HH---HHHH
Confidence 3 22233344466666778888888888888888888776322 5567778888888887642 22 2222
Q ss_pred HHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007543 272 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 351 (599)
Q Consensus 272 m~~~g~~~~~~~~~~ll~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (599)
+...... -+...+.++ ..+.+. |.-++..|.+.|.++.|..+.- ++ .++..-.
T Consensus 155 l~~~s~~-------------y~~~k~~~~---c~~~~l------~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~ 207 (336)
T d1b89a_ 155 LELFWSR-------------VNIPKVLRA---AEQAHL------WAELVFLYDKYEEYDNAIITMM---NH--PTDAWKE 207 (336)
T ss_dssp HHHHSTT-------------SCHHHHHHH---HHTTTC------HHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCH
T ss_pred HHhcccc-------------CCHHHHHHH---HHHcCC------hHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhH
Confidence 2221100 111222221 122221 3445566666666666655432 21 2333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 007543 352 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 431 (599)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 431 (599)
...+..+.+.++.+...++.....+. .| ...+.++......-+.. -++..+.+.
T Consensus 208 ~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~----------------------r~V~~~~k~ 261 (336)
T d1b89a_ 208 GQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHT----------------------RAVNYFSKV 261 (336)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHH----------------------HHHHHHHHT
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHH----------------------HHHHHHHhc
Confidence 33444455555444444333333321 11 11222332222222222 234444455
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHH
Q 007543 432 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 472 (599)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (599)
+++.-...+++.....| +..+.+++...|...++++.-
T Consensus 262 ~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l 299 (336)
T d1b89a_ 262 KQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQAL 299 (336)
T ss_dssp TCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHH
Confidence 55666666666655444 346777888888888876543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00032 Score=57.77 Aligned_cols=70 Identities=16% Similarity=0.011 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 491 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 491 (599)
.+|+.+..+|.+.|++++|++.+++.++.+ +.+..+|..+..++...|++++|+..|++..+ +.|+....
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~ 137 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDI 137 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 467778888999999999999999988753 34577899999999999999999999999988 56655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.00036 Score=58.59 Aligned_cols=109 Identities=6% Similarity=-0.018 Sum_probs=67.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKG--------------Y-APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
.....+.+.|++++|++.|.+..+.- . +.....|+.+..+|.+.|++++|+..+.+.++..+. +
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-N 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-h
Confidence 44566677778888877777654310 0 113345566666777777777777777777665433 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 256 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 256 (599)
..+|..+..++...|++++|.+.|+.+++.. +.+..+...+..+.
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~----p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 6667777777777777777777777776543 33444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=0.00016 Score=57.63 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=26.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 144 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 200 (599)
Q Consensus 144 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 200 (599)
+.+.|.+.|++++|++.|++..+.+. .+..+|..+..+|.+.|++++|++.+++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 44444455555555555554444422 234444445555555555555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.74 E-value=0.00047 Score=56.70 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGY----APS-----------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 207 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 207 (599)
.-.+.+.+.|++.+|...|.+....-. .++ ..+|+.+..+|.+.|++++|++.+.+.++..+. +
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~ 100 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-N 100 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch-h
Confidence 345666778888888888887665310 011 234555666666666666666666666654322 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 007543 208 ALTYQIILKLFVEANKFKEAEEVFMTLLDE 237 (599)
Q Consensus 208 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 237 (599)
..+|..+..++...|++++|...|+..++.
T Consensus 101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 101 VKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566666666666666666666666666653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.70 E-value=0.019 Score=53.11 Aligned_cols=285 Identities=12% Similarity=0.109 Sum_probs=151.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 136 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 215 (599)
Q Consensus 136 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 215 (599)
+|..+-..+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4445555788888899999999999987653 567888889999999999888765 2667888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 007543 216 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 295 (599)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 295 (599)
..+.+......|.-+ ......+......++..|-..|.+++...+++.....
T Consensus 77 ~~l~~~~e~~la~i~--------~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-------------------- 128 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC--------GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-------------------- 128 (336)
T ss_dssp HHHHHTTCHHHHHHT--------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------------------
T ss_pred HHHHhCcHHHHHHHH--------HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--------------------
Confidence 888888777554321 1122345555667888898999999888888765432
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcCCHH
Q 007543 296 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK----------AYNILLDAFAISGMVD 365 (599)
Q Consensus 296 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----------~~~~li~~~~~~g~~~ 365 (599)
-..+...++-++..|++.+ .++-.+.++... + ..|.. .|..++..|.+.|.++
T Consensus 129 -------------~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s--~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~ 191 (336)
T d1b89a_ 129 -------------ERAHMGMFTELAILYSKFK-PQKMREHLELFW--S-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 191 (336)
T ss_dssp -------------TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS--T-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred -------------CccchHHHHHHHHHHHHhC-hHHHHHHHHhcc--c-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHH
Confidence 1234455666666666643 233233222221 0 11111 1233444444445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007543 366 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 445 (599)
Q Consensus 366 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (599)
+|..+. .++ .++..-....+..+.+..+.+...++.....+. .|+ ..+.|+......-+.
T Consensus 192 ~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~----------- 251 (336)
T d1b89a_ 192 NAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDH----------- 251 (336)
T ss_dssp HHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCH-----------
T ss_pred HHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCH-----------
Confidence 444332 111 122222222333344444433333333322221 111 112222222222222
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhc
Q 007543 446 VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 514 (599)
Q Consensus 446 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 514 (599)
..++..+.+.+++.....+++...+.| +....++|...|...++++.-+..++.-
T Consensus 252 -----------~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~~ 306 (336)
T d1b89a_ 252 -----------TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDAY 306 (336)
T ss_dssp -----------HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred -----------HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 334555566777777777777766544 4567889999999999988777777653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00042 Score=58.14 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007543 417 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILL 495 (599)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 495 (599)
+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++.+.|++++|+..|++..+ +.|+ ......+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45567778889999999999999999998653 33577899999999999999999999999988 4554 44555555
Q ss_pred HHHhhcCcH
Q 007543 496 SLAKTADER 504 (599)
Q Consensus 496 ~~~~~~g~~ 504 (599)
.+..+....
T Consensus 153 ~~~~~l~~~ 161 (169)
T d1ihga1 153 KVKQKIKAQ 161 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444443333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.61 E-value=0.00053 Score=57.41 Aligned_cols=115 Identities=17% Similarity=0.089 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007543 141 FLMLITAYGKQGDFNKAEKVLSFMNKK---GYAPS-----------VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 206 (599)
Q Consensus 141 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 206 (599)
+....+.+.+.|++.+|...|++.... ....+ ...|+.+..+|.+.|++++|+..+++.+...+ .
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-~ 96 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-A 96 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc-c
Confidence 334566777788888888887765531 11111 23455667777778888888888888777643 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 007543 207 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 260 (599)
Q Consensus 207 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (599)
+..+|..+..++...|++++|...|..+++.+ |.+..+...+-....+.+
T Consensus 97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~----P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Confidence 67777777778888888888888888877643 445555555544444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=2.1e-05 Score=79.32 Aligned_cols=224 Identities=8% Similarity=0.024 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 007543 191 NAEAIFRRMQSSGPRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ-KMFHMMIYMYKKAGGYEKARKL 268 (599)
Q Consensus 191 ~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 268 (599)
+|.+.|++..+. +|| ...+..+..++...+++++| |++++.. .|+. ..++.....+ + ..+..+.+.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~-----dp~~a~~~~~e~~Lw-~-~~y~~~ie~ 71 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT-----DLEYALDKKVEQDLW-N-HAFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH-----CHHHHHHHTHHHHHH-H-HHTHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc-----ChhhHHHHhHHHHHH-H-HHHHHHHHH
Confidence 677888888773 444 34566677778888888776 6666532 2221 1122111111 1 124456666
Q ss_pred HHHHHHcCCCCCHHHHHH----Hh-cccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007543 269 FALMAERGVQQSTVTYNS----LM-SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 343 (599)
Q Consensus 269 ~~~m~~~g~~~~~~~~~~----ll-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (599)
++...+....++...... .+ .+.+.++.++..+....+.. .++...+..+...+.+.|+.++|...+.......
T Consensus 72 ~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 150 (497)
T d1ya0a1 72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI 150 (497)
T ss_dssp HHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH
T ss_pred HHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 766665443333322211 11 12344445544444333322 2345567788888889999999998887776432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 007543 344 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 423 (599)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 423 (599)
...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... +|...++..
T Consensus 151 ---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~n 225 (497)
T d1ya0a1 151 ---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTN 225 (497)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 13567778889999999999999999988763 3456899999999999999999999999998775 678888888
Q ss_pred HHHHHHhcC
Q 007543 424 LIKGYAKVN 432 (599)
Q Consensus 424 li~~~~~~g 432 (599)
|...+.+..
T Consensus 226 L~~~~~~~~ 234 (497)
T d1ya0a1 226 LQKALSKAL 234 (497)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 888876544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=8.2e-05 Score=74.90 Aligned_cols=208 Identities=10% Similarity=0.029 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--H
Q 007543 140 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV-VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL--K 216 (599)
Q Consensus 140 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll--~ 216 (599)
.+..+..+|...|++++| |+++.... |+. ..++.. ...-...+..+.+.++...+....++..-....+ .
T Consensus 22 a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~ 94 (497)
T d1ya0a1 22 SKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE--QDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF 94 (497)
T ss_dssp SSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH--HHHHHHHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH--HHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHHHH
Confidence 344455666666666655 56655431 211 111111 1111122456667777666544333322222111 1
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 007543 217 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 296 (599)
Q Consensus 217 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 296 (599)
.....+.++.|+..+....+.+ +++...+..+...+.+.|+.++|...+.........-.......+....+++++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVD----LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHTC-----------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC----hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHH
Confidence 2223444555555554443211 344556677777777888888777766555432100000000111122455566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007543 297 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 360 (599)
Q Consensus 297 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (599)
|...|.+..+.. +-+...|+.|...|...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus 171 A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 171 AESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666665555543 2244566666666666777777777776666554 5556666666555543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.49 E-value=0.00098 Score=55.70 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++.+
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 22344555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0022 Score=53.97 Aligned_cols=74 Identities=9% Similarity=0.207 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 007543 419 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKNI 493 (599)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~ 493 (599)
..+..+...+.+.|++++|...++++.+.. +-+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+-..
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 456778888999999999999999998653 4457789999999999999999999998874 3688998766443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0018 Score=54.58 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=82.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007543 143 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 222 (599)
Q Consensus 143 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 222 (599)
.........|++++|.+.|.+..... +.... ......+.+...-..+... ....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 44567778888888888888887642 11100 0000000111111111110 2345677888899999
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 007543 223 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE-----RGVQQSTVT 283 (599)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 283 (599)
++++|...+++++..+ +-+...|..++.+|.+.|+..+|++.|+++.. .|+.|...+
T Consensus 82 ~~~~Al~~~~~al~~~----P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998765 67889999999999999999999999998753 477776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.31 E-value=0.00034 Score=63.30 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007543 148 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 227 (599)
Q Consensus 148 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 227 (599)
..+.|++++|+..+++..+... .|...+..+...|+..|++++|...|+...+..+. +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999988753 37889999999999999999999999999885433 344444444444333333332
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007543 228 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 275 (599)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (599)
..-..... ..+-+++...+......+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~---~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAK---VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEE---CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhh---cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111110 1111233444555667788889999999999988765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.30 E-value=0.0007 Score=55.02 Aligned_cols=84 Identities=13% Similarity=0.014 Sum_probs=41.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007543 151 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG----------GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 220 (599)
Q Consensus 151 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 220 (599)
.+.+++|++.|+...+.. +.+..+|..+..+|... +.+++|+..|++.++..+. +..+|..+..+|..
T Consensus 10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHH
Confidence 334555555555555443 22444555544444432 2334555555555554332 44455555555544
Q ss_pred cC-----------CHHHHHHHHHHhHh
Q 007543 221 AN-----------KFKEAEEVFMTLLD 236 (599)
Q Consensus 221 ~g-----------~~~~A~~~~~~~~~ 236 (599)
.| .+++|.+.|++.++
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc
Confidence 33 24556666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.20 E-value=0.00047 Score=62.35 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 361 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 440 (599)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 440 (599)
.|++++|+..+++.++.. +.|...+..+...|+..|++++|...++...+.. +-+...+..+...+...+..+++..-
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHHH
Confidence 344444444444444432 2234444444444444444444444444444332 11222333333333333333332222
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 007543 441 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 481 (599)
Q Consensus 441 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (599)
.......+-+++...+......+.+.|+.++|..+++++.+
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 11111111111222333344555666777777777766655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.05 E-value=0.00077 Score=54.75 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-----------CHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-----------DFDSAVVWYKEMESCGFPPDQKAKNILLSL 497 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 497 (599)
+++|++.|++.++.+ +.+..+|..+..+|...| ++++|.+.|++..+ +.|+...+..-+..
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~ 128 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 128 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHH
Confidence 345555555555432 223445555555554433 35778888888877 56766665544433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.95 E-value=0.0035 Score=51.37 Aligned_cols=101 Identities=20% Similarity=0.113 Sum_probs=64.5
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-
Q 007543 174 VSHTAL--MEAYGRGGRYKNAEAIFRRMQSSGPR-P----------SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK- 239 (599)
Q Consensus 174 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~-p----------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~- 239 (599)
.+|..+ ...+.+.|++++|+..|++.++.... | ...+|+.+..+|.+.|++++|.+.+++.++...
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345555 34455667777777777776642211 1 134667777778888888888877777664210
Q ss_pred -CCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007543 240 -SPLKPD-----QKMFHMMIYMYKKAGGYEKARKLFALMAE 274 (599)
Q Consensus 240 -~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (599)
....++ ..+++.+..+|...|++++|+..|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 23567788899999999999999988764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.87 E-value=0.014 Score=47.62 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=71.6
Q ss_pred hHHHH--HHHHHhcCChHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 007543 140 DFLML--ITAYGKQGDFNKAEKVLSFMNKKGYA-P----------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSS---- 202 (599)
Q Consensus 140 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~-p----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 202 (599)
.|..+ ...+.+.|++++|++.|++..+.... | ...+|+.+..+|...|++++|++.+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 56677889999999999988753110 1 1467889999999999999999998887642
Q ss_pred -CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 007543 203 -GPRPS-----ALTYQIILKLFVEANKFKEAEEVFMTLLD 236 (599)
Q Consensus 203 -g~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 236 (599)
...++ ...+..+..+|...|++++|.+.|++.++
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 22466678899999999999999998875
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0047 Score=45.59 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=48.5
Q ss_pred CHHhHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007543 137 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG-----YAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALT 210 (599)
Q Consensus 137 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 210 (599)
+..++..+...+.+.|++++|...|++..+.. ..++ ..+++.|..+|.+.|++++|++.++++++..+. +..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence 45566677777777888888877777665421 1111 456777777777777777777777777765433 3334
Q ss_pred HHH
Q 007543 211 YQI 213 (599)
Q Consensus 211 ~~~ 213 (599)
++.
T Consensus 83 ~~N 85 (95)
T d1tjca_ 83 NGN 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.015 Score=42.76 Aligned_cols=77 Identities=9% Similarity=0.012 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 007543 172 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG-----PRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 245 (599)
Q Consensus 172 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 245 (599)
+...+..+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|.+.++++++.+ |-+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~----P~~ 79 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD----PEH 79 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC----cCC
Confidence 44455567777778888888888887765421 1122 4567777777778888888888887777643 334
Q ss_pred HHHHHHH
Q 007543 246 QKMFHMM 252 (599)
Q Consensus 246 ~~~~~~l 252 (599)
..+++.+
T Consensus 80 ~~a~~Nl 86 (95)
T d1tjca_ 80 QRANGNL 86 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.12 E-value=0.079 Score=41.41 Aligned_cols=81 Identities=14% Similarity=0.008 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCC
Q 007543 397 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKD 468 (599)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 468 (599)
.+.++|++++++..+.| +...+..|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 33344444444433 234566666666666554 22333333333332 345
Q ss_pred HhHHHHHHHHHHhCC
Q 007543 469 FDSAVVWYKEMESCG 483 (599)
Q Consensus 469 ~~~A~~~~~~m~~~g 483 (599)
.++|.+++++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.72 E-value=0.17 Score=39.39 Aligned_cols=110 Identities=10% Similarity=-0.023 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 007543 328 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 403 (599)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 403 (599)
++++|+.+|++..+.|. + .....|. .....+.++|+..+++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 34555555555555441 1 1111121 122345666666666666554 44444444444443 34667777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 007543 404 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 448 (599)
Q Consensus 404 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 448 (599)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777777665 44455555555554 346777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.76 E-value=0.56 Score=35.20 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 007543 421 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 483 (599)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 483 (599)
+...++.+..+|+-++-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.++-+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3344444455555555555555444322 4444444555555555555555555555554444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.74 E-value=0.57 Score=35.18 Aligned_cols=141 Identities=9% Similarity=0.031 Sum_probs=93.9
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 007543 218 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 297 (599)
Q Consensus 218 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~a 297 (599)
+.-.|..++..++..+... +.+..-||-+|--....-+-+...++++.+-+. -| ++.+++.+.+
T Consensus 12 ~ildG~ve~Gveii~k~~~------ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD-------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK------SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD-------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH------HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHcc------cCCccccceeeeecccccchHHHHHHHHHHhhh---cC-------chhhhcHHHH
Confidence 3456777888888877764 334455555555555555555555555554321 00 1235666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007543 298 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 377 (599)
Q Consensus 298 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (599)
..-+-.+- .+...++.-++.+.+.|+-++-.++++.+.+.+ ++++...-.+..+|-+.|...++.+++.+..+.
T Consensus 76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 55554432 344556777788888888888888888877765 788888888888999999999998888888887
Q ss_pred CCC
Q 007543 378 RCS 380 (599)
Q Consensus 378 ~~~ 380 (599)
|.+
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=1.7 Score=32.59 Aligned_cols=75 Identities=8% Similarity=0.039 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 007543 415 VPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKA 490 (599)
Q Consensus 415 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 490 (599)
.|...|--....++.++. ++++|+.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 345555445555666554 3456777777776532 2232 3555566667777788888877777777 5666543
Q ss_pred HH
Q 007543 491 KN 492 (599)
Q Consensus 491 ~~ 492 (599)
..
T Consensus 109 A~ 110 (124)
T d2pqrb1 109 VG 110 (124)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.55 E-value=7.2 Score=36.74 Aligned_cols=170 Identities=6% Similarity=-0.065 Sum_probs=92.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007543 326 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 405 (599)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (599)
.+..+.+...+......+ .+.....-.+......+++..+...++.|.... ........-+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555666555554442 233333334444455566666666666654321 11233334455666666777777766
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCH-H---HHHHHHHHHHhcCCHhHHHHHHHHH
Q 007543 406 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KPNQ-T---IFTTIMDAYGKNKDFDSAVVWYKEM 479 (599)
Q Consensus 406 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m 479 (599)
|..+.. .++ -|..|.. .+.|..-. +....+ .+.. . .-..-+..+...|....|...+..+
T Consensus 342 ~~~~a~---~~~--fYG~LAa--~~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQ---QRG--FYPMVAA--QRIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHT---SCS--HHHHHHH--HHTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc---CCC--hHHHHHH--HHcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 666653 233 2322221 11221000 000000 0000 0 0112355677899999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCcHHHHHHHHHhcc
Q 007543 480 ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 515 (599)
Q Consensus 480 ~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 515 (599)
.+. .+......+.....+.|.++.|+....+..
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 763 356667788888999999999999888763
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.23 E-value=2 Score=32.26 Aligned_cols=50 Identities=16% Similarity=0.057 Sum_probs=29.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007543 153 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 202 (599)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 202 (599)
++++++.+|+++.+.+.......+..|.-+|.+.|++++|.+.++.+++.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34566666666665431111345566666677777777777777776663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.94 E-value=3.8 Score=28.95 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007543 434 LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 495 (599)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 495 (599)
.=+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...+ ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3345555555556667777777777777777777777777777666542 223334454443
|