Citrus Sinensis ID: 007558

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60

MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR

cccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHcccccccccHHHHHcccccccccccHHHHHHHHHcccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccEEEEEEcccccccHHHHHHHcccccEEccccccccEEEEEEccccccccccEEEEccccEEEEEEEcccccccccccccccEEcccccccccEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEcccEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccHHHHcccccccccccEEEEccccHHHHHHHHHHHcccccccccccEEEccHHHHHHHHccccccccccccccccccccc

ccccccccccccccccHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEcccccccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHccccHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccccccccEEEEEcccccccccEEEEEEcccEEEEEEEccccccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEEccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHEcEccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHccHHHccccccccccccccc

maidsalpsplgtplceKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFnldgatdrdtfkskvpvvtyedlqpEIQRiangdrsailsshpvsefltssgtsagerklmptIHEELDRRQLLFSLLMPVmnlyvpgldkgkglYFLFVKAETktasgllarpvltsyykseqfktrpydpfnvytspdeailCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADdisagtlnpnvtdpsirKCMEnilkpnpelaefitkecsgekwdgiitriwpntkyLDVIVTGAMaqyiptldhysgglplactmyassecffglnmkpmckpsevsytimpnmgyfeflphdpnspplspespprlvdlAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGyynsapqfrfvkRKNVLlsidsdktdeAELQKGIDNASLLLKEFNASVIEytsyadtttipgHYVIFWELLVKdaanspsdevLNQCCLVVEESLNSVYRqgrvadnsigpleirvvkngtfEELMDYAISRGasinqykaprcvsftpilellngrvvskhfspaaphwvperrr

maidsalpsplgtplcEKDAKALRFIEEmtrnadpvqERVLAAIlsrngeteylrrfnldgatdrdtfkskvpvvtyedlqPEIQRIANGDRSAILSSHPVSEFltssgtsagerkLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETktasgllarpvltsyykseqfktrpydPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAgtlnpnvtdpsiRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYnsapqfrfvkRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRqgrvadnsigpleiRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLngrvvskhfspaaphwvperrr

MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDpnspplspesppRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR

*********************ALRFIEEMT***DPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRI*********************************IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFL****************LVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDS*******LQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFS************

*********PLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFL***********LMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAET********RPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMD***************RCVSFTPILELLNGRVVSKHFSPA**********

***********GTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSP******PPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWV*****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		598	2.2.26 [Sep-21-2011]
O82333		590	Probable indole-3-acetic	yes	no	0.983	0.996	0.769	0.0
O22190		595	Indole-3-acetic acid-amid	no	no	0.991	0.996	0.761	0.0
Q0D4Z6		605	Probable indole-3-acetic	yes	no	0.988	0.976	0.728	0.0
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.988	0.976	0.728	0.0
P0C0M2		614	Probable indole-3-acetic	no	no	0.971	0.946	0.722	0.0
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.993	0.994	0.700	0.0
Q9LSQ4		612	Indole-3-acetic acid-amid	no	no	0.973	0.950	0.656	0.0
Q9SZT9		549	Indole-3-acetic acid-amid	no	no	0.892	0.972	0.734	0.0
O81829		612	Indole-3-acetic acid-amid	no	no	0.973	0.950	0.646	0.0
Q8LQM5		610	Probable indole-3-acetic	no	no	0.961	0.942	0.623	0.0

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function desciption

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/599 (76%), Positives = 519/599 (86%), Gaps = 11/599 (1%)

Query: 1   MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLD 60
           MA+DS L SPLG P CEKDAKALRFIEEMTRNAD VQE +LA IL+RN +TEYLRRFNL 
Sbjct: 1   MAVDSNLSSPLGPPACEKDAKALRFIEEMTRNADTVQENLLAEILARNADTEYLRRFNLC 60

Query: 61  GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120
           GATDRDTFK+K+PV+TYEDLQPEIQRIA+GDRS ILS+HP+SEFLTSSGTSAGERKLMPT
Sbjct: 61  GATDRDTFKTKIPVITYEDLQPEIQRIADGDRSPILSAHPISEFLTSSGTSAGERKLMPT 120

Query: 121 IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSE 180
           I EELDRRQLL+SLLMPVMNLYVPGLDKGKG+YFLFVK+ETKT  GL ARPVLTSYYKSE
Sbjct: 121 IKEELDRRQLLYSLLMPVMNLYVPGLDKGKGMYFLFVKSETKTPGGLPARPVLTSYYKSE 180

Query: 181 QFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240
            F++RPYDP+NVYTSP+EAILC DSFQSMY QMLCGL+ R  VLRVGAVFASGLLRAIRF
Sbjct: 181 HFRSRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLLDRLSVLRVGAVFASGLLRAIRF 240

Query: 241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRI 300
           LQL+W + A DI  G L+  +TDPSIR+CM  ILKP+P LAEFI +EC  + W+ IITRI
Sbjct: 241 LQLHWSRFAHDIELGCLDSEITDPSIRQCMSGILKPDPVLAEFIRRECKSDNWEKIITRI 300

Query: 301 WPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTI 360
           WPNTKYLDVIVTGAMAQYIPTL++YSGGLP+ACTMYASSEC+FGLN+ PM KPSEVSYTI
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSECYFGLNLNPMSKPSEVSYTI 360

Query: 361 MPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLV 420
           MPNM YFEF+P              + V+L  V +GK+YELVVTTYAGL RYRVGDIL V
Sbjct: 361 MPNMAYFEFIPLGGT----------KAVELVDVNIGKEYELVVTTYAGLCRYRVGDILRV 410

Query: 421 TGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA-SLLLKEFNASVIEYTSYADT 479
           TG++NSAPQF FV+RKNVLLSIDSDKTDE+ELQK ++NA S+L +E  + V EYTSYADT
Sbjct: 411 TGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADT 470

Query: 480 TTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVV 539
           +TIPGHYV++WELLV+D A  PS E L +CCL +EESLNSVYRQ RVADNS+GPLEIRVV
Sbjct: 471 STIPGHYVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVV 530

Query: 540 KNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 598
           +NGTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSP+ PHW PERRR
Sbjct: 531 RNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHWTPERRR 589

Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function description

>sp\|Q9SZT9\|GH32_ARATH Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=3	Back alignment and function description

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		598
300680026		598	GH3 [Dimocarpus longan]	0.998	0.998	0.855	0.0
224115056		597	GH3 family protein [Populus trichocarpa]	0.996	0.998	0.832	0.0
225438898		600	PREDICTED: probable indole-3-acetic acid	1.0	0.996	0.826	0.0
255567939		598	Indole-3-acetic acid-amido synthetase GH	1.0	1.0	0.834	0.0
147783384		607	hypothetical protein VITISV_042944 [Viti	0.993	0.978	0.824	0.0
378747661		603	GH3-1 [Quercus robur]	0.988	0.980	0.830	0.0
430800811		609	Chain A, Crystal Structure Of An Indole-	1.0	0.981	0.816	0.0
225429317		598	PREDICTED: probable indole-3-acetic acid	1.0	1.0	0.816	0.0
224060651		596	GH3 family protein [Populus trichocarpa]	0.996	1.0	0.816	0.0
224105651		596	GH3 family protein [Populus trichocarpa]	0.996	1.0	0.809	0.0

>gi\|300680026\|gb\|ADK27717.1\| GH3 [Dimocarpus longan]	Back alignment and taxonomy information

 Score = 1058 bits (2736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/597 (85%), Positives = 551/597 (92%)

Query: 1   MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLD 60
           MAID+   SPLG    EKDAKAL+FIEEMT NA+ VQE VLA IL +N ETEYLRRF LD
Sbjct: 1   MAIDATHSSPLGPAAIEKDAKALQFIEEMTTNANAVQETVLAEILRQNAETEYLRRFKLD 60

Query: 61  GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120
           GATDRD+FKSK+PVVTYEDLQ EI+RIA+GDRSAILSSHPVSEFLTSSGTSAGERKLMPT
Sbjct: 61  GATDRDSFKSKIPVVTYEDLQTEIKRIADGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120

Query: 121 IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSE 180
           IH ELDRRQLL+SLLMPVMNLYVPGLDKGKGLYFLFVKAE+KT  GLLARPVLTSYYKSE
Sbjct: 121 IHAELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKAESKTPGGLLARPVLTSYYKSE 180

Query: 181 QFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240
            FKTRPYDPFN+YTSP+EAILC DSFQSMY QMLCGL+MREEVLRVGAVFASGLLRAIRF
Sbjct: 181 HFKTRPYDPFNIYTSPNEAILCADSFQSMYTQMLCGLLMREEVLRVGAVFASGLLRAIRF 240

Query: 241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRI 300
           LQLNWKQLADDIS G+LNP +TDPS+R CM  ILKPNPELAEFITKECSGE WDGIITRI
Sbjct: 241 LQLNWKQLADDISTGSLNPKITDPSLRDCMTKILKPNPELAEFITKECSGENWDGIITRI 300

Query: 301 WPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTI 360
           WPNTKYLDVIVTGAMAQYIPTLD+YS GLP+ACTMYASSEC+FGLN++PMCKPSEVSYTI
Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSRGLPMACTMYASSECYFGLNLRPMCKPSEVSYTI 360

Query: 361 MPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLV 420
           MPNMGYFEF+PHDP +PP S +SPPRLVDLA V+VG  YELV+TTYAGL RYRVGDIL V
Sbjct: 361 MPNMGYFEFMPHDPAAPPPSRDSPPRLVDLADVEVGTDYELVITTYAGLCRYRVGDILHV 420

Query: 421 TGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT 480
           TG++N+APQFRFV+RKNVLLSIDSDKTDEAELQK IDNASLLLK+F+ SVIEYTSYADTT
Sbjct: 421 TGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQKAIDNASLLLKQFDTSVIEYTSYADTT 480

Query: 481 TIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVK 540
           TIPGHYVIFWELLVKD +N P+DEVL++CCL +EE +NSVYRQGRVADNSIGPLEIRVV+
Sbjct: 481 TIPGHYVIFWELLVKDPSNPPTDEVLSKCCLAMEECMNSVYRQGRVADNSIGPLEIRVVR 540

Query: 541 NGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 597
           NGTFEELMDYAISRGASINQYKAPRCVSF+PILELL  RVVSKH SPAAPHW PERR
Sbjct: 541 NGTFEELMDYAISRGASINQYKAPRCVSFSPILELLGARVVSKHLSPAAPHWNPERR 597

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224115056\|ref\|XP_002332226.1\| GH3 family protein [Populus trichocarpa] gi\|222831839\|gb\|EEE70316.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225438898\|ref\|XP_002283886.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255567939\|ref\|XP_002524947.1\| Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis] gi\|223535782\|gb\|EEF37444.1\| Indole-3-acetic acid-amido synthetase GH3.3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|147783384\|emb\|CAN70815.1\| hypothetical protein VITISV_042944 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|378747661\|gb\|AFC36444.1\| GH3-1 [Quercus robur]	Back alignment and taxonomy information

>gi\|430800811\|pdb\|4B2G\|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis gi\|430800812\|pdb\|4B2G\|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis	Back alignment and taxonomy information

>gi\|225429317\|ref\|XP_002271252.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224060651\|ref\|XP_002300248.1\| GH3 family protein [Populus trichocarpa] gi\|222847506\|gb\|EEE85053.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224105651\|ref\|XP_002313887.1\| GH3 family protein [Populus trichocarpa] gi\|222850295\|gb\|EEE87842.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		598
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.983	0.996	0.769	2.1e-251
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.991	0.996	0.76	4.8e-245
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.971	0.946	0.716	6.8e-230
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.991	0.993	0.701	2.4e-225
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.973	0.950	0.649	3e-211
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.973	0.950	0.644	1.1e-208
UNIPROTKB\|Q8LQM5		610	GH3.1 "Probable indole-3-aceti	0.963	0.944	0.618	1.4e-192
UNIPROTKB\|Q60EJ6		629	GH3.4 "Probable indole-3-aceti	0.968	0.920	0.616	4.7e-190
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.956	0.967	0.532	1.3e-162
TAIR\|locus:2043308		585	GH3.9 "AT2G47750" [Arabidopsis	0.944	0.965	0.526	3.1e-161

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2421 (857.3 bits), Expect = 2.1e-251, P = 2.1e-251
 Identities = 461/599 (76%), Positives = 519/599 (86%)

Query:     1 MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLD 60
             MA+DS L SPLG P CEKDAKALRFIEEMTRNAD VQE +LA IL+RN +TEYLRRFNL 
Sbjct:     1 MAVDSNLSSPLGPPACEKDAKALRFIEEMTRNADTVQENLLAEILARNADTEYLRRFNLC 60

Query:    61 GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120
             GATDRDTFK+K+PV+TYEDLQPEIQRIA+GDRS ILS+HP+SEFLTSSGTSAGERKLMPT
Sbjct:    61 GATDRDTFKTKIPVITYEDLQPEIQRIADGDRSPILSAHPISEFLTSSGTSAGERKLMPT 120

Query:   121 IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSE 180
             I EELDRRQLL+SLLMPVMNLYVPGLDKGKG+YFLFVK+ETKT  GL ARPVLTSYYKSE
Sbjct:   121 IKEELDRRQLLYSLLMPVMNLYVPGLDKGKGMYFLFVKSETKTPGGLPARPVLTSYYKSE 180

Query:   181 QFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240
              F++RPYDP+NVYTSP+EAILC DSFQSMY QMLCGL+ R  VLRVGAVFASGLLRAIRF
Sbjct:   181 HFRSRPYDPYNVYTSPNEAILCPDSFQSMYTQMLCGLLDRLSVLRVGAVFASGLLRAIRF 240

Query:   241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRI 300
             LQL+W + A DI  G L+  +TDPSIR+CM  ILKP+P LAEFI +EC  + W+ IITRI
Sbjct:   241 LQLHWSRFAHDIELGCLDSEITDPSIRQCMSGILKPDPVLAEFIRRECKSDNWEKIITRI 300

Query:   301 WPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTI 360
             WPNTKYLDVIVTGAMAQYIPTL++YSGGLP+ACTMYASSEC+FGLN+ PM KPSEVSYTI
Sbjct:   301 WPNTKYLDVIVTGAMAQYIPTLEYYSGGLPMACTMYASSECYFGLNLNPMSKPSEVSYTI 360

Query:   361 MPNMGYFEFLPHDXXXXXXXXXXXXRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLV 420
             MPNM YFEF+P              + V+L  V +GK+YELVVTTYAGL RYRVGDIL V
Sbjct:   361 MPNMAYFEFIP----------LGGTKAVELVDVNIGKEYELVVTTYAGLCRYRVGDILRV 410

Query:   421 TGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLL-KEFNASVIEYTSYADT 479
             TG++NSAPQF FV+RKNVLLSIDSDKTDE+ELQK ++NAS +L +E  + V EYTSYADT
Sbjct:   411 TGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQKAVENASSILHEECGSRVAEYTSYADT 470

Query:   480 TTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVV 539
             +TIPGHYV++WELLV+D A  PS E L +CCL +EESLNSVYRQ RVADNS+GPLEIRVV
Sbjct:   471 STIPGHYVLYWELLVRDGARQPSHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVV 530

Query:   540 KNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 598
             +NGTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSP+ PHW PERRR
Sbjct:   531 RNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHWTPERRR 589

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS;RCA;IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60EJ6 GH3.4 "Probable indole-3-acetic acid-amido synthetase GH3.4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2043308 GH3.9 "AT2G47750" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLS0	GH38_ORYSI	6, ., 3, ., 2, ., -	0.7289	0.9882	0.9768	N/A	no
Q9SZT9	GH32_ARATH	6, ., 3, ., 2, ., -	0.7346	0.8929	0.9726	no	no
P0C0M2	GH32_ORYSJ	6, ., 3, ., 2, ., -	0.7220	0.9715	0.9462	no	no
O22190	GH33_ARATH	6, ., 3, ., 2, ., -	0.7616	0.9916	0.9966	no	no
Q9LQ68	GH34_ARATH	6, ., 3, ., 2, ., -	0.7004	0.9933	0.9949	no	no
O82333	GH31_ARATH	6, ., 3, ., 2, ., -	0.7696	0.9832	0.9966	yes	no
Q0D4Z6	GH38_ORYSJ	6, ., 3, ., 2, ., -	0.7289	0.9882	0.9768	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		598
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	0.0
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	0.0
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	0.0
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

 Score =  939 bits (2429), Expect = 0.0
 Identities = 442/601 (73%), Positives = 510/601 (84%), Gaps = 7/601 (1%)

Query: 1   MAIDSALPSPLGTPLC-EKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNL 59
           MA+DS L S + +P   EKD KAL+FIEEMTRN D VQE+VL  ILSRN  TEYL+RF+L
Sbjct: 1   MAVDSPLQSRMASPTTSEKDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKRFDL 60

Query: 60  DGATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMP 119
           +GA DR TFKSKVPVVTYEDL+ EIQRI+NGDRS ILSSHP++EFLTSSGTSAGERKLMP
Sbjct: 61  NGAVDRKTFKSKVPVVTYEDLKTEIQRISNGDRSPILSSHPITEFLTSSGTSAGERKLMP 120

Query: 120 TIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKS 179
           TI E++DRRQLL SLLMPVMNLYVPGLDKGKGLYFLFVK+E+KT+ GL ARP LTSYYKS
Sbjct: 121 TIEEDIDRRQLLGSLLMPVMNLYVPGLDKGKGLYFLFVKSESKTSGGLPARPALTSYYKS 180

Query: 180 EQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIR 239
           + F+T  YD  NVYTSP+EAILC DS QSMY QMLCGL+MR EVLR+GAVF SGLLRAI 
Sbjct: 181 DHFRTSDYD--NVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAIS 238

Query: 240 FLQLNWKQLADDISAGTLNPNVTDPSIRKCMENIL-KPNPELAEFITKECSGEKWDGIIT 298
           FLQ NWK+LA DIS GTL+  + DP+I+  M  IL KP+ ELAEF+   CS E W+GIIT
Sbjct: 239 FLQNNWKELAQDISTGTLSSKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQENWEGIIT 298

Query: 299 RIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSY 358
           +IWPNTKYLDVIVTGAMAQYIP L++YSGGLP+A T+YASSE +FG+N+ PMCKPSEVSY
Sbjct: 299 KIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMASTIYASSESYFGINLNPMCKPSEVSY 358

Query: 359 TIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDIL 418
           TIMPNM YFEFLPH+ +      E+   LV+LA V+VGK+YELV+TTYAGL RYRVGDIL
Sbjct: 359 TIMPNMAYFEFLPHNHDGDGALDET--SLVELADVEVGKEYELVITTYAGLYRYRVGDIL 416

Query: 419 LVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYAD 478
            VTG++NSAPQF+F++RKNVLLSI+SDKTDEA+LQK ++NAS LL E    VIEYTSYA+
Sbjct: 417 RVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSYAE 476

Query: 479 TTTIPGHYVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIR 537
           T TIPGHYVI+WELL +D +N+ PSDEV+ +CCL +EESLNSVYRQ RV+D SIGPLEIR
Sbjct: 477 TKTIPGHYVIYWELLGRDQSNALPSDEVMAKCCLEMEESLNSVYRQSRVSDKSIGPLEIR 536

Query: 538 VVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 597
           VV+NGTFEELMDYAISRG+SINQYK PRCVS TPI+ELL+ RVVS HFSP+ PHW PERR
Sbjct: 537 VVQNGTFEELMDYAISRGSSINQYKVPRCVSLTPIMELLDSRVVSAHFSPSLPHWSPERR 596

Query: 598 R 598
            
Sbjct: 597 H 597

Length = 597

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		598
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.97
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.95
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.93
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.87
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.61
PRK00174		637	acetyl-CoA synthetase; Provisional	99.46
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.45
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.45
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.44
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.41
PRK07529		632	AMP-binding domain protein; Validated	99.39
PRK07788		549	acyl-CoA synthetase; Validated	99.39
PRK06060		705	acyl-CoA synthetase; Validated	99.39
PLN02654		666	acetate-CoA ligase	99.38
PRK04319		570	acetyl-CoA synthetase; Provisional	99.36
PLN02574		560	4-coumarate--CoA ligase-like	99.36
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.35
PRK07514		504	malonyl-CoA synthase; Validated	99.35
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.35
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.35
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.34
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.33
PRK09274		552	peptide synthase; Provisional	99.33
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.32
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.31
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.31
PRK07638		487	acyl-CoA synthetase; Validated	99.31
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.3
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	99.29
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.28
PRK07867		529	acyl-CoA synthetase; Validated	99.28
PRK06164		540	acyl-CoA synthetase; Validated	99.28
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.27
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.27
PLN03051		499	acyl-activating enzyme; Provisional	99.27
PRK13383		516	acyl-CoA synthetase; Provisional	99.27
PRK05852		534	acyl-CoA synthetase; Validated	99.27
PRK09088		488	acyl-CoA synthetase; Validated	99.27
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.27
PRK10946		536	entE enterobactin synthase subunit E; Provisional	99.26
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.26
PRK06145		497	acyl-CoA synthetase; Validated	99.26
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	99.25
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	99.25
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.25
PRK07470		528	acyl-CoA synthetase; Validated	99.25
PLN02246		537	4-coumarate--CoA ligase	99.25
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	99.24
PLN02860		563	o-succinylbenzoate-CoA ligase	99.24
PRK13382		537	acyl-CoA synthetase; Provisional	99.24
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.24
PRK12583		558	acyl-CoA synthetase; Provisional	99.23
PRK08316		523	acyl-CoA synthetase; Validated	99.23
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.23
PLN02330		546	4-coumarate--CoA ligase-like 1	99.23
PLN02736		651	long-chain acyl-CoA synthetase	99.23
PRK06839		496	acyl-CoA synthetase; Validated	99.23
PLN02614		666	long-chain acyl-CoA synthetase	99.22
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.22
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.21
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	99.21
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	99.21
PRK06188		524	acyl-CoA synthetase; Validated	99.2
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	99.2
PRK12467		3956	peptide synthase; Provisional	99.19
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	99.19
PRK07787		471	acyl-CoA synthetase; Validated	99.18
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	99.17
PRK08315		559	AMP-binding domain protein; Validated	99.16
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.15
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	99.14
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	99.14
PRK12467		3956	peptide synthase; Provisional	99.14
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	99.13
PLN02861		660	long-chain-fatty-acid-CoA ligase	99.13
PLN03052		728	acetate--CoA ligase; Provisional	99.13
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	99.12
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	99.12
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	99.12
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	99.11
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	99.11
PTZ00342		746	acyl-CoA synthetase; Provisional	99.11
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	99.11
PRK13388		540	acyl-CoA synthetase; Provisional	99.11
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	99.11
PRK13391		511	acyl-CoA synthetase; Provisional	99.1
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.1
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	99.09
PRK12316		5163	peptide synthase; Provisional	99.08
PRK05857		540	acyl-CoA synthetase; Validated	99.07
PRK06178		567	acyl-CoA synthetase; Validated	99.06
PRK13390		501	acyl-CoA synthetase; Provisional	99.06
PRK12316		5163	peptide synthase; Provisional	99.06
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	99.06
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.06
PRK05850		578	acyl-CoA synthetase; Validated	99.05
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.05
PLN03102		579	acyl-activating enzyme; Provisional	99.04
PRK08308		414	acyl-CoA synthetase; Validated	99.01
PRK09192		579	acyl-CoA synthetase; Validated	99.01
PRK05691		4334	peptide synthase; Validated	99.01
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	99.01
PLN02430		660	long-chain-fatty-acid-CoA ligase	99.0
PRK05691		4334	peptide synthase; Validated	99.0
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.99
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.99
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.97
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	98.96
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	98.95
PRK07798		533	acyl-CoA synthetase; Validated	98.95
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	98.95
PRK08180		614	feruloyl-CoA synthase; Reviewed	98.92
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.91
PTZ00216		700	acyl-CoA synthetase; Provisional	98.9
PRK12582		624	acyl-CoA synthetase; Provisional	98.86
PRK06018		542	putative acyl-CoA synthetase; Provisional	98.81
PLN02479		567	acetate-CoA ligase	98.8
PRK08162		545	acyl-CoA synthetase; Validated	98.79
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	98.79
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.66
PRK07868		994	acyl-CoA synthetase; Validated	98.59
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.52
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	98.23
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.1
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	97.68
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	95.71
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	95.54
PTZ00297		1452	pantothenate kinase; Provisional	95.34
PRK09188		365	serine/threonine protein kinase; Provisional	89.95

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=3.1e-134  Score=1107.62  Aligned_cols=584  Identities=66%  Similarity=1.130  Sum_probs=548.4

Q ss_pred             CCcccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCChhhHhcCCCCCCCHHHHhhcCCCcccccchHHHHHHHcCCC
Q 007558           13 TPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDLQPEIQRIANGDR   92 (598)
Q Consensus        13 ~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edf~~~vPl~~Yed~~p~ier~~~Ge~   92 (598)
                      ....+++++.++.+|..++|+.++|+++|++||+.|++|+|||+|||++|+++++||++|||++|||++|||+||++||.
T Consensus        15 ~~~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Yedl~pyI~Ri~~Ge~   94 (612)
T PLN02620         15 YNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYEDIQPDINRIANGDT   94 (612)
T ss_pred             CccccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHHHhHHHHHHHHcCCC
Confidence            34456668889999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccccccCCCceeecc
Q 007558           93 SAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPV  172 (598)
Q Consensus        93 ~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~  172 (598)
                      ++|||++||.+|++|||||||++|+||+|+++++.+..++.+|+.++++.+|++..||.||+.+...+.+|++|||+|++
T Consensus        95 s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~  174 (612)
T PLN02620         95 SPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPV  174 (612)
T ss_pred             CCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccccc
Confidence            89999999999999999998899999999999999888899999999998999999999999988889999999999999


Q ss_pred             cccccccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHHHHHHHHHHHHHH
Q 007558          173 LTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLADDI  252 (598)
Q Consensus       173 s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~l~~~w~~l~~dI  252 (598)
                      |+++++|..|+.++..+...|++|.+++.++|..|+|||||||+|.++++|..|+++|+++|+++++.|+++|++||+||
T Consensus       175 st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI  254 (612)
T PLN02620        175 LTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDI  254 (612)
T ss_pred             cchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcccCCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCchhhhHHHHHhhcCCCCee
Q 007558          253 SAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLA  332 (598)
Q Consensus       253 ~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~~l~~~~~g~~v~  332 (598)
                      +.|+++++++++++|.++.+.|+|+|++|+.|+.+|.+.+|+|++++|||||++|+||++|+|++|.+.|+.|+||+|++
T Consensus       255 ~~G~ls~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~  334 (612)
T PLN02620        255 RTGTIDSQITDPSVREAVMKILKPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLV  334 (612)
T ss_pred             hcCCCCccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCC---------CCCCCCccccccccCCCCeEEEEE
Q 007558          333 CTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPL---------SPESPPRLVDLAHVQVGKQYELVV  403 (598)
Q Consensus       333 ~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~---------~~~~~~~~v~~~eve~G~~yelvv  403 (598)
                      +.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+...         ++..+.++|+++||++|++|||||
T Consensus       335 ~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~Yelvv  414 (612)
T PLN02620        335 CTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVV  414 (612)
T ss_pred             cccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEEEEE
Confidence            99999999999999999999988999999999999999987532100         011234589999999999999999


Q ss_pred             cccccccccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCCCCC
Q 007558          404 TTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIP  483 (598)
Q Consensus       404 Tt~~GL~RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~~~p  483 (598)
                      ||++||||||+||||+|+||||++|+|+|++|.+.++|++|||++|++|..||.+|...|...+++|+|||+++|.+..|
T Consensus       415 Tt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyts~~d~~~~P  494 (612)
T PLN02620        415 TTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYTSYADTSTIP  494 (612)
T ss_pred             EecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEEeccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999987766799999999999988999


Q ss_pred             ceEEEEEEEeecccCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHHHHHHHHhcCCCCCCCCC
Q 007558          484 GHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKA  563 (598)
Q Consensus       484 ~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~~~~~~~~~G~~~~Q~K~  563 (598)
                      |||+||||+...+. ..++++++++||..||++||.+|+.+|..+++|+|++|++|++|||++++++++++|++.+|||+
T Consensus       495 ghYvl~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~  573 (612)
T PLN02620        495 GHYVLFWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKT  573 (612)
T ss_pred             CceEEEEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccC
Confidence            99999999953221 23567899999999999999999999966556999999999999999999999999999999999


Q ss_pred             CcccCCHhHHHHHhccccceeccCCCCCCCCCCC
Q 007558          564 PRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR  597 (598)
Q Consensus       564 Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  597 (598)
                      |||+++++++++|+++|+++|||+++|.|+|+++
T Consensus       574 Pr~v~~~~~~~~l~~~v~~~~~s~~~~~~~~~~~  607 (612)
T PLN02620        574 PRCVKFAPIIELLNSRVVSNYFSPKCPKWVPGHK  607 (612)
T ss_pred             ceEecCHHHHHHHHhhhheeeccccCCCCCcccc
Confidence            9999999999999999999999999999999865

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		598
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		0.0
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		1e-158
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-152
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-115

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

Iteration: 1

Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/598 (80%), Positives = 533/598 (89%) Query: 1 MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLD 60 MA+D L SPLG EKDAKAL+FIEEMTRNAD VQERVLA ILSRNGETEYL+RF L+ Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60 Query: 61 GATDRDTFKSKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPT 120 G+T R+TFKSK+PV+ YEDLQPEIQRIANGDRSAILS+HP+SEFLTSSGTSAGERKLMPT Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120 Query: 121 IHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSE 180 I EELDRRQ+L+SLLMPVMNLYVPGLDKGKGLYFLFVK+ET+T GLLARPVLTSYYKSE Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180 Query: 181 QFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF 240 FKTRPYDP+NVYTSP+EAILC DSFQSMY QMLCG+ R++VLR+GAVFASGLLRAIRF Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240 Query: 241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRI 300 LQLNW QL DI GTL+P +TDPS+R C+ +LKP+PELA+ + ECS + W+GIITRI Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300 Query: 301 WPNTKYLDVIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTI 360 WPNTKYLDVIVTGAMAQYIPTLD+YSGGLPLACTMYASSEC+FGLN+ PM KPSEVSYTI Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI 360 Query: 361 MPNMGYFEFLPHDXXXXXXXXXXXXRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLV 420 MPNM YFEFLPH+ RLVDLAHV+VGK+YELV+TTYAGL RYRVGDIL V Sbjct: 361 MPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRV 420 Query: 421 TGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT 480 TG++NSAPQF FV+RKNVLLSIDSDKTDEAELQK +DNAS LL+E N SV+EYTS+ADT Sbjct: 421 TGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK 480 Query: 481 TIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVK 540 TIPGHYVI+WELLVKD+ANSPSDE+L QCCL +EESLNSVYRQGRVADNSIGPLEIRVVK Sbjct: 481 TIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVK 540 Query: 541 NGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 598 +GTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSPA PHW P RRR Sbjct: 541 SGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598

PyMOL of 4b2g

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		598
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-177
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-175
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

 Score =  514 bits (1324), Expect = e-177
 Identities = 270/584 (46%), Positives = 396/584 (67%), Gaps = 15/584 (2%)

Query: 10  PLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFK 69
               P+ + +    + ++++T N   +Q+ +L  I++ N +TEYL+RF +    D++ FK
Sbjct: 5   ASMKPIFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLI-DRFDKELFK 63

Query: 70  SKVPVVTYEDLQPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQ 129
             VP+V+YED++P + R+ NG+ S ++S+  ++ FL SSGTS G +K+MP  ++ LD   
Sbjct: 64  KNVPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLT 123

Query: 130 LLFSLLMPVMNLYVPGLDKGKGLYFLFVKAETKTASGLLARPVLTSYYKSEQFKTRPYDP 189
            ++ L M V+  +V G+++GKG+ FLF K E+ T SGL AR   +SY+KS+ FK RP + 
Sbjct: 124 FIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNW 183

Query: 190 FNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRFLQLNWKQLA 249
           +  YTSPDE ILC ++ +S+Y  +LCGL+ R+EV+R G++FAS ++RAI  L+ +W++L 
Sbjct: 184 YYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELC 243

Query: 250 DDISAGTLNPNVTDPSIRKCMENIL-KPNPELAEFITKECSGEKWDGIITRIWPNTKYLD 308
            +I +G L+  VTD   +  +  +L  P PELA+ I + C+   W GI+ R+WPNTKY++
Sbjct: 244 SNIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIE 303

Query: 309 VIVTGAMAQYIPTLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFE 368
            +VTG+M QY+P L++Y   LPL  T Y SSE  FG+N+ P+CKP +VSYT MPNM YFE
Sbjct: 304 TVVTGSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFE 363

Query: 369 FLPHDPNSPPLSPESPPRLVDLAHVQVGKQYELVVTTYAGLNRYRVGDILLVTGYYNSAP 428
           F+P D             +VDL  V++G  YE VVT +AGL R RVGDI+LVTG+YN+AP
Sbjct: 364 FIPMDGG-------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAP 416

Query: 429 QFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVI 488
           QF+FV+R+NV+LSIDSDKT+E +L K +  A L+L+     + ++TSYADT+T PGHYV+
Sbjct: 417 QFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVV 476

Query: 489 FWELLVKD------AANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNG 542
           + E+  K+      A     +E L+ CCLV+EESL++VY++ R  D SIGPLEIRVV+ G
Sbjct: 477 YLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQG 536

Query: 543 TFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFS 586
           TF+ LMD+ IS+GAS  QYK PRC+     L++L   VV+K FS
Sbjct: 537 TFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580

PyMOL of 4eql

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		598
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.91
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.89
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.89
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.62
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.58
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.55
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.53
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.51
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.51
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.51
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.51
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.48
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.47
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.46
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.46
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.46
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.46
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.45
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.45
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.45
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.45
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.44
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.43
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.42
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.41
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.39
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.39
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.38
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.38
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.36
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.33
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	99.31
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	99.23
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.21
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	99.14
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	98.41
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	97.08
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	96.95

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

Probab=100.00  E-value=1.6e-135  Score=1131.55  Aligned_cols=598  Identities=82%  Similarity=1.310  Sum_probs=533.0

Q ss_pred             CCccCCCCCCCCCCcccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhcCCChhhHhcCCCCCCCHHHHhhcCCCcccccc
Q 007558            1 MAIDSALPSPLGTPLCEKDAKALRFIEEMTRNADPVQERVLAAILSRNGETEYLRRFNLDGATDRDTFKSKVPVVTYEDL   80 (598)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~gf~~i~s~edf~~~vPl~~Yed~   80 (598)
                      |+.+...+|++.-+..+++++.++.||++++|+.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl   80 (609)
T 4b2g_A            1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDL   80 (609)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHH
T ss_pred             CCccccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHH
Confidence            67778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCCcccccCCccceeecccccCCCCcccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEecccc
Q 007558           81 QPEIQRIANGDRSAILSSHPVSEFLTSSGTSAGERKLMPTIHEELDRRQLLFSLLMPVMNLYVPGLDKGKGLYFLFVKAE  160 (598)
Q Consensus        81 ~p~ier~~~Ge~~~ll~~~pi~~f~~TSGTT~G~~K~IP~T~~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~  160 (598)
                      +||||||++||.++|||++||.+|++|||||+|++|+||+|+++++.+..++++|+.++++.+|.++.||.|++++++.+
T Consensus        81 ~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~  160 (609)
T 4b2g_A           81 QPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSE  160 (609)
T ss_dssp             HHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCC
T ss_pred             HHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCc
Confidence            99999999999878999999999999999999999999999999999888899999999998998888999999878888


Q ss_pred             cccCCCceeecccccccccccccCCCCCCCccccCchhhhccCChhhHHHHHHHhhhccccceeEEEeccHHHHHHHHHH
Q 007558          161 TKTASGLLARPVLTSYYKSEQFKTRPYDPFNVYTSPDEAILCVDSFQSMYIQMLCGLIMREEVLRVGAVFASGLLRAIRF  240 (598)
Q Consensus       161 ~~t~~Gip~g~~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~~~~~~~ll~~~~~  240 (598)
                      ..|++|+|+|++|+.++++.+|+++|.+|...|++|.+++.++|..|++||||||||.++++|+.|+++|+++++++++.
T Consensus       161 ~~t~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~  240 (609)
T 4b2g_A          161 TRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF  240 (609)
T ss_dssp             EECTTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHH
T ss_pred             ccCCCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcccCCCCCCChhhhhhhhhccCCCHHHHHHHHHHhccCCCcccccccCCCCceeEEEEeCchhhhHH
Q 007558          241 LQLNWKQLADDISAGTLNPNVTDPSIRKCMENILKPNPELAEFITKECSGEKWDGIITRIWPNTKYLDVIVTGAMAQYIP  320 (598)
Q Consensus       241 l~~~w~~l~~dI~~gt~~~~i~~~~~r~~l~~~l~~~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~l~~~~~g~~~~y~~  320 (598)
                      |+++|++||+||++|+++++++++++|+++++.++|+|++|++|+++|.+.+|.|++++|||||++|.||++|+|++|++
T Consensus       241 L~~~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~  320 (609)
T 4b2g_A          241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIP  320 (609)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHH
T ss_pred             HHHHHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHH
Confidence            99999999999999999999999999999999999999999999999998778999999999999999999999999999


Q ss_pred             HHHhhcCCCCeeccccccccccccccCCCCCCCCCCceeeecCCeEEEeecCCCCCCCCCCCCCCccccccccCCCCeEE
Q 007558          321 TLDHYSGGLPLACTMYASSECFFGLNMKPMCKPSEVSYTIMPNMGYFEFLPHDPNSPPLSPESPPRLVDLAHVQVGKQYE  400 (598)
Q Consensus       321 ~l~~~~~g~~v~~~~ygaSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~~~~v~~~eve~G~~ye  400 (598)
                      +|++++|++|+++.+|+||||+||+|++|.|+++..+|+|+|+.+||||||+++.+.+.+++..+++|+++|||+|++||
T Consensus       321 ~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~Ye  400 (609)
T 4b2g_A          321 TLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYE  400 (609)
T ss_dssp             HHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEE
T ss_pred             HHHHHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEE
Confidence            99999999999999999999999999999999888899999999999999987641000012345699999999999999


Q ss_pred             EEEcccccccccccCCEEEEeeeeCCCCeEEEEeecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEeecCC
Q 007558          401 LVVTTYAGLNRYRVGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTT  480 (598)
Q Consensus       401 lvvTt~~GL~RYr~GDvV~v~gf~~~~P~i~f~gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~~d~~  480 (598)
                      |||||++||||||+||+|+|+||++++|+|+|+||++++||++||||+|++|++||.+|++.|+++|+.|.|||+++|.+
T Consensus       401 lViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~  480 (609)
T 4b2g_A          401 LVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK  480 (609)
T ss_dssp             EEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECS
T ss_pred             EehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999987878999999999999888


Q ss_pred             CCCceEEEEEEEeecccCCCCChHHHHHHHHHHHHHhChhhHhccccCCccCCeEEEEeCCChHHHHHHHHHhcCCCCCC
Q 007558          481 TIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQ  560 (598)
Q Consensus       481 ~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtF~~~~~~~~~~G~~~~Q  560 (598)
                      +.||||+||||+++.+....++++.+++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||
T Consensus       481 ~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ  560 (609)
T 4b2g_A          481 TIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQ  560 (609)
T ss_dssp             SSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC--------------
T ss_pred             CCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCC
Confidence            88999999999974211123567899999999999999999999977789999999999999999999999999999999


Q ss_pred             CCCCcccCCHhHHHHHhccccceeccCCCCCCCCCCCC
Q 007558          561 YKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR  598 (598)
Q Consensus       561 ~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  598 (598)
                      ||+|||+++++++++|+++||++|||+++|.|+|+++|
T Consensus       561 ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~  598 (609)
T 4b2g_A          561 YKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR  598 (609)
T ss_dssp             --CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred             cCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccch
Confidence            99999999999999999999999999999999999875

PyMOL of 4b2g

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		598
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.47
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.32
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	99.23
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.21
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.91
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.87
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.85

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.47  E-value=2.6e-12  Score=143.22  Aligned_cols=179  Identities=13%  Similarity=0.092  Sum_probs=106.8

Q ss_pred             CceeEEEEeCch---hhhHHHHHhhcC--CCCeecccccccccc-ccccCCCCC---CCCCCceeeecCCeEEEeecCCC
Q 007558          304 TKYLDVIVTGAM---AQYIPTLDHYSG--GLPLACTMYASSECF-FGLNMKPMC---KPSEVSYTIMPNMGYFEFLPHDP  374 (598)
Q Consensus       304 l~~l~~~~~g~~---~~y~~~l~~~~~--g~~v~~~~ygaSEg~-~~i~~~~~~---~~~~~~~~l~~~~~ffEFip~~~  374 (598)
                      +..|+.+.+||.   ....+.+.+.++  +++++ +.||+||.. +.+...+..   .+...+. ..++.. +..++.+ 
T Consensus       373 l~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~gs~G~-p~~g~~-v~ivd~~-  448 (643)
T d1pg4a_         373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQ-PALVDNE-  448 (643)
T ss_dssp             CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCC-EEEECTT-
T ss_pred             CCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCCcccc-ccCCCE-EEEECCC-
Confidence            344677777763   345566767664  58898 999999953 322111111   0111111 122221 2233322 


Q ss_pred             CCCCCCCCCCCccccccccCCCCeEEEEEccc-----ccccc----------------cccCCEEEEeeeeCCCCeEEEE
Q 007558          375 NSPPLSPESPPRLVDLAHVQVGKQYELVVTTY-----AGLNR----------------YRVGDILLVTGYYNSAPQFRFV  433 (598)
Q Consensus       375 ~~~~~~~~~~~~~v~~~eve~G~~yelvvTt~-----~GL~R----------------Yr~GDvV~v~gf~~~~P~i~f~  433 (598)
                                     ..+++.|+.|||+|+..     .|+|.                |+|||+++++.    ...+.|+
T Consensus       449 ---------------g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~  509 (643)
T d1pg4a_         449 ---------------GHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWIT  509 (643)
T ss_dssp             ---------------CCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEE
T ss_pred             ---------------CCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEe
Confidence                           12457799999999752     34443                88999999983    7799999


Q ss_pred             eecCceecccccccCHHHHHHHHHHHHHHhhhcCCeEEeEEEe--ecCCCCCceEEEEEEEeecccCCCCChHHHHHHHH
Q 007558          434 KRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSY--ADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCL  511 (598)
Q Consensus       434 gR~~~~l~~~GEki~e~~v~~av~~a~~~l~~~g~~l~~f~~~--~d~~~~p~~Y~l~~E~e~~~~~~~~~~~~l~~~~~  511 (598)
                      ||.+|+|++.|++|++.|||++|.+.      .+  |.+-+|+  ++.. ....-+.|+.+.. +  ...+++...++.+
T Consensus       510 GR~dd~ik~~G~ri~p~eIE~~l~~~------p~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~-~--~~~~~~~~~~i~~  577 (643)
T d1pg4a_         510 GRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNH-G--EEPSPELYAEVRN  577 (643)
T ss_dssp             EESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETT-TEEEEEEEEEECT-T--CCCCHHHHHHHHH
T ss_pred             cccccEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEECCC-CCeEEEEEEEECC-C--CCCCHHHHHHHHH
Confidence            99999999999999999999999652      22  3344443  2321 1123345666642 2  2344554445555


Q ss_pred             HHHHHh
Q 007558          512 VVEESL  517 (598)
Q Consensus       512 ~ld~~L  517 (598)
                      .+.+.|
T Consensus       578 ~~~~~L  583 (643)
T d1pg4a_         578 WVRKEI  583 (643)
T ss_dssp             HHHHHT
T ss_pred             HHHhhC
Confidence            555555

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure