Citrus Sinensis ID: 007570

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------60
MDETSLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
ccccccccEEEEEEcccccEEEEEEEEccHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHcccccccccccccccccEEEccccEEEEccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHccccccccccccc
cccccccHHHHHHHHHHHHHcEEEEEcccHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHcccccccHccHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHEHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccHHcccHHHcccccccccEHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccccccccc
mdetslspfslCMHVCVLLHMLIYCLFCYFCSVVAFlsdmsgksplyKKAFVFFSSPISRELVTHikkdstvlprigALREMNLEyfavdsqgfvtddERALEElfgdeessqKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQtiqnfpmsetCELLILDRSVDQIAPIIHEWTYDAICHDLLnlegnkyvhevpsktdgppekkevlleEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASiypekfegekglnLMKLAKLTADDMTAVNNMRLLGgaleskkstigafSLKFDIHKKKRAarkdrsggeetwqlsRFYPMIEELVEKLgknelskddypcmndpsptfhgttpsaltnevpaahsmrsrrtptwarprssddgyssdsvLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREvvlgssslddppqFITKLKMLTAhelslddiqi
mdetslspfSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRElvthikkdstvlpRIGALREMNLEYFAVDSQGFVTDDERALEELfgdeessqkADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHevpsktdgppeKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAaqiqngsrdgsnlstRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLtakeditrenKLRLLMIVASIypekfegekglNLMKLAKLTADDMTAVNNMRLLGgaleskkstigafslkfdihkkkraarkdrsggeetwqlsrfyPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTnevpaahsmrsrrtptwarprssddgyssDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKlnrevvlgssslddpPQFITKLKMLTahelslddiqi
MDETSLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
********FSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERAL************ADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVH***************LLEEHDPIWVELRHAHIAD**************************************LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH***************TWQLSRFYPMIEELVE************************************************************************KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGS********FITKLKMLT***********
****SLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKS*******TFRDLVPTKLAAGVW******************CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKY*******************EEHDPIWVELRHAHIADASERLHEKMTGF**********************DLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLL**************************************QLSRFYPMIEELVEKLGKNELSKDDYPCMNDPS***********************************************************FVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFIT*****************
MDETSLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEEL********KADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHE*********EKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHK**************TWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEV****************************VLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
****SLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQ*********NLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESK***IGA********************GEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSP*****************************************************MGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLT***********
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDETSLSPFSLCMHVCVLLHMLIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query598 2.2.26 [Sep-21-2011]
Q9C5X3666 SNARE-interacting protein yes no 0.944 0.848 0.788 0.0
Q9SZ77662 Protein transport Sec1b O no no 0.938 0.847 0.709 0.0
Q9C5P7673 Protein transport Sec1a O no no 0.919 0.817 0.690 0.0
Q7XWP3665 Probable protein transpor yes no 0.936 0.842 0.679 0.0
Q5VNU3659 Probable protein transpor no no 0.939 0.852 0.620 0.0
Q54QC8598 Protein transport protein yes no 0.846 0.846 0.283 5e-52
Q64324593 Syntaxin-binding protein yes no 0.819 0.826 0.268 1e-47
Q28288593 Syntaxin-binding protein yes no 0.841 0.848 0.266 7e-46
Q15833593 Syntaxin-binding protein yes no 0.836 0.843 0.265 2e-45
Q6R748594 Syntaxin-binding protein yes no 0.834 0.840 0.270 3e-45
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1 SV=2 Back     alignment and function desciption
 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/571 (78%), Positives = 520/571 (91%), Gaps = 6/571 (1%)

Query: 32  SVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDS 91
           +V+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGALREMNLE+FA+DS
Sbjct: 98  NVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGALREMNLEFFAIDS 157

Query: 92  QGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMT 151
           QGF+TD ERALE+LFGDEE+S+K DACLNVMA+RIATVFASLREFP VRYRAAKSLDA T
Sbjct: 158 QGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAVRYRAAKSLDAST 217

Query: 152 ITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAI 211
           +TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +ETCELLILDRS+DQIAP+IHEWTYDA+
Sbjct: 218 MTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIAPVIHEWTYDAM 277

Query: 212 CHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGF 271
           CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEEHDPIW+ELRHAHIADASERLH+KMT F
Sbjct: 278 CHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIADASERLHDKMTNF 337

Query: 272 VSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGL 331
           +SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQYSEQIDKLSLHVEIA K+N +IRE GL
Sbjct: 338 LSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIARKLNDLIREQGL 396

Query: 332 RELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMK 391
           RELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE KLRLLMI+A+IYPEKFEGEKG NLMK
Sbjct: 397 RELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKFEGEKGQNLMK 456

Query: 392 LAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSR 451
           LAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+HKKKRA RK+R   E  WQLSR
Sbjct: 457 LAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKERQ-EEAAWQLSR 515

Query: 452 FYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHG---TTPSALTNEVPAAHSMRSRRTPT 508
           FYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG    + +A +++  AA SMRSRRTPT
Sbjct: 516 FYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTPT 575

Query: 509 WARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVL 568
           WA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGG TRSEL+VCHKL+ KL REV+L
Sbjct: 576 WAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVIL 635

Query: 569 GSSSLDDPPQFITKLKMLTAH-ELSLDDIQI 598
           GS+SLDDPPQFITKLK+LTA+ +LSLDD+QI
Sbjct: 636 GSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
Regulator of vesicle trafficking involved in cytokinesis and root hair development, but not required for cell elongation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZ77|SEC1B_ARATH Protein transport Sec1b OS=Arabidopsis thaliana GN=SEC1B PE=2 SV=3 Back     alignment and function description
>sp|Q9C5P7|SEC1A_ARATH Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3 Back     alignment and function description
>sp|Q7XWP3|SEC1A_ORYSJ Probable protein transport Sec1a OS=Oryza sativa subsp. japonica GN=Os04g0252400 PE=3 SV=2 Back     alignment and function description
>sp|Q5VNU3|SEC1B_ORYSJ Probable protein transport Sec1b OS=Oryza sativa subsp. japonica GN=Os06g0135900 PE=2 SV=1 Back     alignment and function description
>sp|Q54QC8|SEC1_DICDI Protein transport protein sec1 OS=Dictyostelium discoideum GN=sec1 PE=3 SV=1 Back     alignment and function description
>sp|Q64324|STXB2_MOUSE Syntaxin-binding protein 2 OS=Mus musculus GN=Stxbp2 PE=2 SV=1 Back     alignment and function description
>sp|Q28288|STXB2_CANFA Syntaxin-binding protein 2 OS=Canis familiaris GN=STXBP2 PE=2 SV=1 Back     alignment and function description
>sp|Q15833|STXB2_HUMAN Syntaxin-binding protein 2 OS=Homo sapiens GN=STXBP2 PE=1 SV=2 Back     alignment and function description
>sp|Q6R748|STXB1_CHICK Syntaxin-binding protein 1 OS=Gallus gallus GN=STXBP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query598
224125086666 predicted protein [Populus trichocarpa] 0.948 0.851 0.830 0.0
224071599666 predicted protein [Populus trichocarpa] 0.963 0.864 0.812 0.0
356514152665 PREDICTED: SNARE-interacting protein KEU 0.963 0.866 0.795 0.0
449442403664 PREDICTED: SNARE-interacting protein KEU 0.948 0.853 0.813 0.0
356563274666 PREDICTED: SNARE-interacting protein KEU 0.948 0.851 0.802 0.0
255537107663 plant sec1, putative [Ricinus communis] 0.944 0.852 0.815 0.0
356563276671 PREDICTED: SNARE-interacting protein KEU 0.946 0.843 0.797 0.0
357477033666 SNARE-interacting protein KEULE [Medicag 0.961 0.863 0.779 0.0
297844098665 hypothetical protein ARALYDRAFT_471384 [ 0.944 0.849 0.784 0.0
225448938 753 PREDICTED: SNARE-interacting protein KEU 0.946 0.751 0.796 0.0
>gi|224125086|ref|XP_002329890.1| predicted protein [Populus trichocarpa] gi|222871127|gb|EEF08258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/568 (83%), Positives = 524/568 (92%), Gaps = 1/568 (0%)

Query: 32  SVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDS 91
           +V+ FLSDMSGKSPLYKKAFVFFSSPISRELV+HIKKDS+VL RIGALREMNLEYFA+DS
Sbjct: 99  NVIMFLSDMSGKSPLYKKAFVFFSSPISRELVSHIKKDSSVLTRIGALREMNLEYFAIDS 158

Query: 92  QGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMT 151
           QGF+TD+ERALEELF DEE S+K DACLNVMA+RIATVFASLREFP VRYRAAKSLD  T
Sbjct: 159 QGFITDNERALEELFVDEEDSRKGDACLNVMASRIATVFASLREFPFVRYRAAKSLDVTT 218

Query: 152 ITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAI 211
           +TTFRDL+PTKLAA +W+CL++YKQ  ++FP +ETCELLILDRS+DQIAPIIHEWTYDA+
Sbjct: 219 MTTFRDLIPTKLAARIWDCLIQYKQKTEHFPQTETCELLILDRSIDQIAPIIHEWTYDAM 278

Query: 212 CHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGF 271
           CHDLLN+EGNKYVHEV SK  GPPEKK+VLLEEHDP+W+ELRHAHIADASERLHEKMT F
Sbjct: 279 CHDLLNMEGNKYVHEVLSKAGGPPEKKDVLLEEHDPVWLELRHAHIADASERLHEKMTNF 338

Query: 272 VSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGL 331
           VSKNKAA+IQ+GSRDG  LSTRDLQ++VQALPQYSEQIDK+SLHVEIAGKINRIIRE+GL
Sbjct: 339 VSKNKAAKIQHGSRDGGELSTRDLQQMVQALPQYSEQIDKISLHVEIAGKINRIIRESGL 398

Query: 332 RELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMK 391
           RELGQLEQDLVFGDAG  DVIKFLT KED TRENKLRLLMI+A+IYPEKFEGE+G N+MK
Sbjct: 399 RELGQLEQDLVFGDAGMTDVIKFLTTKEDATRENKLRLLMILAAIYPEKFEGEEGHNIMK 458

Query: 392 LAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEE-TWQLS 450
           + +L  DDM AVNNMRLL  A E+KKS+ GAFSLKFDIHKKKRAARKDR+G EE TWQLS
Sbjct: 459 VVRLPQDDMNAVNNMRLLAVASETKKSSTGAFSLKFDIHKKKRAARKDRTGAEETTWQLS 518

Query: 451 RFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWA 510
           RFYPMIEEL++KL K ELSKD+YPCMNDPSPTFHGT+ S   ++ PA HSMRSRRTPTWA
Sbjct: 519 RFYPMIEELIDKLNKGELSKDEYPCMNDPSPTFHGTSQSTPMHQAPAPHSMRSRRTPTWA 578

Query: 511 RPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGS 570
           RPR+SDDGYSSDSVL+HASSDFKKMGQRIFVFIVGG TRSELRVCHKLT+KL REV+LGS
Sbjct: 579 RPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTSKLQREVILGS 638

Query: 571 SSLDDPPQFITKLKMLTAHELSLDDIQI 598
           SSLDDPP FITKLK+LTA+ELSLDD+QI
Sbjct: 639 SSLDDPPHFITKLKLLTANELSLDDLQI 666

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071599|ref|XP_002303535.1| predicted protein [Populus trichocarpa] gi|222840967|gb|EEE78514.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514152|ref|XP_003525770.1| PREDICTED: SNARE-interacting protein KEULE-like [Glycine max] Back     alignment and taxonomy information
>gi|449442403|ref|XP_004138971.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] gi|449505029|ref|XP_004162356.1| PREDICTED: SNARE-interacting protein KEULE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356563274|ref|XP_003549889.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255537107|ref|XP_002509620.1| plant sec1, putative [Ricinus communis] gi|223549519|gb|EEF51007.1| plant sec1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356563276|ref|XP_003549890.1| PREDICTED: SNARE-interacting protein KEULE-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|357477033|ref|XP_003608802.1| SNARE-interacting protein KEULE [Medicago truncatula] gi|355509857|gb|AES90999.1| SNARE-interacting protein KEULE [Medicago truncatula] Back     alignment and taxonomy information
>gi|297844098|ref|XP_002889930.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] gi|297335772|gb|EFH66189.1| hypothetical protein ARALYDRAFT_471384 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225448938|ref|XP_002272338.1| PREDICTED: SNARE-interacting protein KEULE-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query598
TAIR|locus:2034670666 KEU "keule" [Arabidopsis thali 0.944 0.848 0.789 4.6e-247
TAIR|locus:2118126662 SEC1B [Arabidopsis thaliana (t 0.941 0.850 0.711 3.7e-213
TAIR|locus:2025482673 SEC1A "secretory 1A" [Arabidop 0.919 0.817 0.693 2.8e-208
DICTYBASE|DDB_G0283937598 sec1 "Sec1-like family protein 0.704 0.704 0.310 4.8e-52
ZFIN|ZDB-GENE-050626-106591 stxbp1a "syntaxin binding prot 0.700 0.708 0.294 2.9e-50
ZFIN|ZDB-GENE-060531-166605 stxbp1b "syntaxin binding prot 0.712 0.704 0.275 6e-50
UNIPROTKB|F1MHC2593 STXBP2 "Uncharacterized protei 0.709 0.715 0.286 1.3e-49
UNIPROTKB|Q6R748594 STXBP1 "Syntaxin-binding prote 0.700 0.705 0.292 6.8e-49
UNIPROTKB|J9NTI1580 STXBP1 "Uncharacterized protei 0.700 0.722 0.286 2.9e-48
UNIPROTKB|J9NUA1548 STXBP1 "Uncharacterized protei 0.719 0.784 0.282 2.9e-48
TAIR|locus:2034670 KEU "keule" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2380 (842.9 bits), Expect = 4.6e-247, P = 4.6e-247
 Identities = 451/571 (78%), Positives = 521/571 (91%)

Query:    32 SVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDS 91
             +V+ FLSDMSGKSPLYKKAFVFFSSP+S+ELV HIKKDS+VLPRIGALREMNLE+FA+DS
Sbjct:    98 NVIMFLSDMSGKSPLYKKAFVFFSSPVSKELVGHIKKDSSVLPRIGALREMNLEFFAIDS 157

Query:    92 QGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMT 151
             QGF+TD ERALE+LFGDEE+S+K DACLNVMA+RIATVFASLREFP VRYRAAKSLDA T
Sbjct:   158 QGFITDHERALEDLFGDEETSRKGDACLNVMASRIATVFASLREFPAVRYRAAKSLDAST 217

Query:   152 ITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAI 211
             +TT RDL+PTKLAAG+WNCL K+KQ+I+NFP +ETCELLILDRS+DQIAP+IHEWTYDA+
Sbjct:   218 MTTLRDLIPTKLAAGIWNCLAKHKQSIENFPQTETCELLILDRSIDQIAPVIHEWTYDAM 277

Query:   212 CHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGF 271
             CHDLLN+EGNKYVH +PSK+ G PEKK+VLLEEHDPIW+ELRHAHIADASERLH+KMT F
Sbjct:   278 CHDLLNMEGNKYVHVIPSKSGGQPEKKDVLLEEHDPIWLELRHAHIADASERLHDKMTNF 337

Query:   272 VSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGL 331
             +SKNKAAQ+Q G RDG+ LSTRDLQK+VQALPQYSEQIDKLSLHVEIA K+N +IRE GL
Sbjct:   338 LSKNKAAQLQ-GKRDGAELSTRDLQKMVQALPQYSEQIDKLSLHVEIARKLNDLIREQGL 396

Query:   332 RELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMK 391
             RELGQLEQDLVFGDAG KDVIK+L+ +E+ +RE KLRLLMI+A+IYPEKFEGEKG NLMK
Sbjct:   397 RELGQLEQDLVFGDAGMKDVIKYLSTQEEASREGKLRLLMILATIYPEKFEGEKGQNLMK 456

Query:   392 LAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSR 451
             LAKL++DDMTAVNNM LLG A+++KK+T G F+LKFD+HKKKRA RK+R   E  WQLSR
Sbjct:   457 LAKLSSDDMTAVNNMSLLGSAVDAKKNTPGGFTLKFDLHKKKRAVRKERQE-EAAWQLSR 515

Query:   452 FYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTP---SALTNEVPAAHSMRSRRTPT 508
             FYPMIEEL+EKL K EL K+D+PCMNDPSP+FHG+T    +A +++  AA SMRSRRTPT
Sbjct:   516 FYPMIEELIEKLSKGELPKEDFPCMNDPSPSFHGSTSLSSAASSSQGQAAQSMRSRRTPT 575

Query:   509 WARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVL 568
             WA+PR SDDGYSSDSVL+HASSDF+KMGQRIFVFIVGG TRSEL+VCHKL+ KL REV+L
Sbjct:   576 WAKPRGSDDGYSSDSVLRHASSDFRKMGQRIFVFIVGGATRSELKVCHKLSTKLKREVIL 635

Query:   569 GSSSLDDPPQFITKLKMLTAHE-LSLDDIQI 598
             GS+SLDDPPQFITKLK+LTA++ LSLDD+QI
Sbjct:   636 GSTSLDDPPQFITKLKLLTANDDLSLDDLQI 666
GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA
GO:0008565 "protein transporter activity" evidence=ISS
GO:0009306 "protein secretion" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0019898 "extrinsic to membrane" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005773 "vacuole" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0000910 "cytokinesis" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
TAIR|locus:2118126 SEC1B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025482 SEC1A "secretory 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283937 sec1 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050626-106 stxbp1a "syntaxin binding protein 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-166 stxbp1b "syntaxin binding protein 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MHC2 STXBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6R748 STXBP1 "Syntaxin-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|J9NTI1 STXBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUA1 STXBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZ77SEC1B_ARATHNo assigned EC number0.70920.93810.8474nono
Q7XWP3SEC1A_ORYSJNo assigned EC number0.67950.93640.8421yesno
Q9C5X3KEULE_ARATHNo assigned EC number0.78800.94480.8483yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
pfam00995554 pfam00995, Sec1, Sec1 family 1e-118
COG5158582 COG5158, SEC1, Proteins involved in synaptic trans 1e-39
>gnl|CDD|216231 pfam00995, Sec1, Sec1 family Back     alignment and domain information 
 Score =  362 bits (931), Expect = e-118
 Identities = 160/607 (26%), Positives = 281/607 (46%), Gaps = 82/607 (13%)

Query: 1   MDETSLSPFSLCMHV------CVLLHMLIY-------CLFC-YFC-----SVVAFLSDMS 41
           +D+ +    S  + V       V L   I         L   YF      +V   + D+ 
Sbjct: 6   LDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDLPAIYFIRPTEENVDRIIDDL- 64

Query: 42  GKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERA 101
            K+P YK   +FF++ +SR L+  + + + V   +  ++E+ L++  ++S  F  +   +
Sbjct: 65  -KNPKYKSYHIFFTNSLSRSLLERLAE-ADVAELVKQVKEIYLDFIPLESDLFSLELPNS 122

Query: 102 LEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPT 161
             +L+    S    ++ L  +A  + ++  +L E P++RY+   S            +  
Sbjct: 123 FRDLY----SPDGDESDLERIAEGLFSLLLTLGEIPIIRYQG-NSAAER--------LAE 169

Query: 162 KLAAGVWNCLMKYKQTIQNFPMS-ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEG 220
           KLA  +   L  +     + P S     LLILDRS+D I P++H+WTY A+ HDLL ++ 
Sbjct: 170 KLAQLLQENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKN 229

Query: 221 NKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQI 280
           N+    + +  +G   KKEV+L+E+DP WVE RH H  D +E++ +++  +  +NK +  
Sbjct: 230 NRV--TLDTPGNGGESKKEVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEENKNSNK 287

Query: 281 QNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQD 340
           +         S  DL++ V+ LP++ ++  KLSLH+ +A ++ + I+E  L ++ +LEQD
Sbjct: 288 KK-------KSISDLKEFVEKLPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVSELEQD 340

Query: 341 LVFGDAGFKDVIKF--LTAKEDITRENKLRLLMIVA-SIYPEKFEGEKGLNLMKLAKLTA 397
           L  G    K       L     +  E+KLRLL++ +     +  + E    L+  A +  
Sbjct: 341 LATGSDADKQKKDILELLNNPKVPLEDKLRLLLLYSLRDGGKGKDLEDLRKLLLHAGIGP 400

Query: 398 DDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIE 457
           + +  V N+  LGG     +++   FS   D  K                 LSR+ P+++
Sbjct: 401 EALNLVKNLEQLGG--LLSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRYKPLLK 458

Query: 458 ELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDD 517
            ++E L K +L  D YP  +       G              S+RS+R     + R    
Sbjct: 459 RILEDLIKGKLDTDSYPYFDPKLANASGPQ-----------GSLRSKRPTAAGQGR---- 503

Query: 518 GYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDDP 576
                           +  QRI VF+VGG T SE R  ++L+ K N + V++GS+S+ +P
Sbjct: 504 ----------------QPPQRIIVFVVGGVTYSEARALYELSKKTNGKRVIIGSTSILNP 547

Query: 577 PQFITKL 583
             F+ +L
Sbjct: 548 ESFLEEL 554

Length = 554
>gnl|CDD|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 598
KOG1300593 consensus Vesicle trafficking protein Sec1 [Intrac 100.0
PF00995564 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m 100.0
KOG1299549 consensus Vacuolar sorting protein VPS45/Stt10 (Se 100.0
KOG1302600 consensus Vacuolar sorting protein VPS33/slp1 (Sec 100.0
COG5158582 SEC1 Proteins involved in synaptic transmission an 100.0
KOG1301621 consensus Vesicle trafficking protein Sly1 (Sec1 f 100.0
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-92  Score=741.61  Aligned_cols=528  Identities=40%  Similarity=0.642  Sum_probs=450.8

Q ss_pred             CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcCCCCCcceEEEEecCCCCHH
Q 007570            1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSGKSPLYKKAFVFFSSPISRE   61 (598)
Q Consensus         1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~~~~~Y~~~~i~Ft~~~~~~   61 (598)
                      ||.+..+.+++||...      |+...             |||||+||.+||++++.||..+.|+|+.+||||+..||+.
T Consensus        29 ~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~  108 (593)
T KOG1300|consen   29 VDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTEESVDCLIKDFEGRSPLYKAAHIFFLDPCPDP  108 (593)
T ss_pred             ecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCchhhHHHHHHhhcccCcccceEEEEEcCCCCHH
Confidence            6889999999999865      22221             9999999999999999999766799999999999999999


Q ss_pred             HHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEEE
Q 007570           62 LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRY  141 (598)
Q Consensus        62 ~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~  141 (598)
                      +++.+.+ +.+...|+++++++++|+|+|+++|+++.|.+|..+|.+. +......+++.+|++|++||.++|++|.|||
T Consensus       109 lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~-~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy  186 (593)
T KOG1300|consen  109 LFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD-NAAIIDANLEKIADQIATVCATLGEYPNVRY  186 (593)
T ss_pred             HHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-hhhhhhhHHHHHHHHHHHHHHHhCcCcceee
Confidence            9999974 4578899999999999999999999999999999999976 5666788999999999999999999999999


Q ss_pred             ccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCCCCCCceEEEecCCCCccchhhhhhhhhHHhhhhcccCCC
Q 007570          142 RAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGN  221 (598)
Q Consensus       142 ~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~I~~~  221 (598)
                      ++.....|+       .+|+++++++++.++.|++..+++|..+++.|||+||++|+++|+||+||||||+|||++|++|
T Consensus       187 ~~~~~~~as-------~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~iaPlLHE~TyqAM~~DLl~iend  259 (593)
T KOG1300|consen  187 RGDFARNAS-------ELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDPVAPLLHEFTYQAMAYDLLPIEND  259 (593)
T ss_pred             ccccccCHH-------HHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccccchHHHHHHHHHHHHHHHhhcCC
Confidence            998765552       5899999999999999987667788878999999999999999999999999999999999999


Q ss_pred             eEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHh
Q 007570          222 KYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQA  301 (598)
Q Consensus       222 ~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~v~~  301 (598)
                      +|.++.+..+|+.  ++++.|+++|++|.++||+||++|.+.|.+.+++|.++++.+..     .++..++.||+++|++
T Consensus       260 ~Y~ye~~g~~g~~--kk~vllde~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~~-----~~k~~S~kDL~~mv~~  332 (593)
T KOG1300|consen  260 VYRYETPGKSGEK--KKEVLLDEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQT-----KSKETSTKDLSKMVKK  332 (593)
T ss_pred             EEEEecCCCCCCc--cceeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc-----cccccchHHHHHHHHh
Confidence            9999886655533  78899999999999999999999999999999999998764432     2335789999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCC-CchHHH-------HHHhhhcCCCChhhHHHHHHHH
Q 007570          302 LPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGD-AGFKDV-------IKFLTAKEDITRENKLRLLMIV  373 (598)
Q Consensus       302 lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~-~~~~~l-------~~~i~~~~~~~~~dklRLl~L~  373 (598)
                      ||+|+++..+++.|+.||++|++.++. +|.+++.+||++++|. ...+.+       +..+. ...+...||+|++++|
T Consensus       333 lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~kik~~~~~~~p~l~-~~~~~~~dklR~Illy  410 (593)
T KOG1300|consen  333 LPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGEKIKDSLRDLLPILL-ESNVRLLDKLRLILLY  410 (593)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccccHHHHHHhhhhhhc-ccCchHHHHHHHHHHH
Confidence            999999999999999999999999988 9999999999999994 333333       33333 4689999999999999


Q ss_pred             HHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCcccccccch
Q 007570          374 ASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFY  453 (598)
Q Consensus       374 ~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~  453 (598)
                      .+. .+|+...++.+|+++.|++.++..++.|+..+|.....     +.+...|     ..+.++++. .+.+|.+|||+
T Consensus       411 ~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~k~-----~~~~rker~-~e~tyqlSR~~  478 (593)
T KOG1300|consen  411 IFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DSFLLKF-----DPPERKERV-EEQTYQLSRWV  478 (593)
T ss_pred             HHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----CcccccC-----CCCcccccc-ccceeeeeeee
Confidence            998 47999999999999999999999999999999987652     2222222     122245665 78999999999


Q ss_pred             hHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccccccc
Q 007570          454 PMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFK  533 (598)
Q Consensus       454 P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  533 (598)
                      |.++.|+|++++++|++++|||+++++....|.          ++.|.   |+..|.+++.+.              .+.
T Consensus       479 P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~----------~~~Sa---r~~~~~~~k~~~--------------~~~  531 (593)
T KOG1300|consen  479 PVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS----------AATSA---RYGHPLSNKTPS--------------AFK  531 (593)
T ss_pred             hHHHHHHHHHHhccCChhhCccccCCccccccC----------ccccc---cccCcccccCcc--------------hhh
Confidence            999999999999999999999998775211111          11232   334555444321              123


Q ss_pred             cCCCeEEEEEEcCCCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 007570          534 KMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM  585 (598)
Q Consensus       534 ~~~~~viVFviGGvTy~Ei~al~~L~~~~~~~iiigsT~il~~~~fl~~l~~  585 (598)
                      ..++++||||+||+||+|+|++|+++++++++|+||||+|+||.+||+.|+.
T Consensus       532 ~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~lk~  583 (593)
T KOG1300|consen  532 KPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDDLKL  583 (593)
T ss_pred             ccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHHHhh
Confidence            5789999999999999999999999999999999999999999999999993

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis [] Back     alignment and domain information
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
1fvf_A591 Crystal Structure Analysis Of Neuronal Sec1 From Th 4e-47
3puj_A594 Crystal Structure Of The Munc18-1 And Syntaxin4 N-P 9e-46
3c98_A606 Revised Structure Of The Munc18a-Syntaxin1 Complex 1e-45
1epu_A591 X-Ray Crystal Structure Of Neuronal Sec1 From Squid 7e-43
2xhe_A650 Crystal Structure Of The Unc18-Syntaxin 1 Complex F 4e-39
2pjx_A592 Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide 7e-39
1mqs_A671 Crystal Structure Of Sly1p In Complex With An N-Ter 3e-11
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid L. Pealei Length = 591 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 156/570 (27%), Positives = 280/570 (49%), Gaps = 74/570 (12%)
Query: 32  SVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 90
           SV   ++D     +P Y+ A +FF+     EL   + K ST    I  L+E+N+ +   +
Sbjct: 80  SVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 91  SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 150
           SQ F  D     + ++ +   +Q         A +IAT+ A+L E+P VRYR+    +A 
Sbjct: 139 SQIFSLDSPDTFQ-VYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 151 TITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQIAPIIHEWT 207
              +F  LV  KL A        Y+    T+   P  +  +LLILDR  D I+P++HE T
Sbjct: 197 ---SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELT 245
Query: 208 YDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 267
           + A+ +DLL +E + Y + V +  +  PE KEVLL+E D +WVE+RH HIA  S+ + +K
Sbjct: 246 FQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQHIAVVSQNVTKK 303
Query: 268 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 327
           +  F  + +     + +        +DL ++++ +PQY +++ K S H+ +A    +  +
Sbjct: 304 LKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ 357
Query: 328 ETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKLRLLMIVASIYPE 379
           +  + +L ++EQDL  G DA         ++++  L  ++ I+  +K+R++++   I+  
Sbjct: 358 QH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKIRIILLYI-IHKG 414
Query: 380 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 439
               E    L++ A + A++   +N+M+ LG  +       G   +    H   R  R+ 
Sbjct: 415 GISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ- 470
Query: 440 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 499
               + T+Q+SR+ P +++++E   +++L    YP +N   P              P+  
Sbjct: 471 ---ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR-------------PSCQ 514
Query: 500 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL- 558
              S R   W +    D G +S            K G R+ +F+VGG + SE+R  +++ 
Sbjct: 515 QPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEMRSAYEVT 559
Query: 559 -TAKLNREVVLGSSSLDDPPQFITKLKMLT 587
            TAK N EV+LGS+ +  P   +  L+ ++
Sbjct: 560 QTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide Complex Length = 594 Back     alignment and structure
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex Length = 606 Back     alignment and structure
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid Length = 591 Back     alignment and structure
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650 Back     alignment and structure
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide Complex Length = 592 Back     alignment and structure
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal Peptide Of Sed5p Length = 671 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query598
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 1e-107
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 2e-90
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 5e-89
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 3e-87
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 3e-86
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1y9j_A159 SEC1 family domain containing protein 1; membrane 3e-08
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650 Back     alignment and structure
 Score =  335 bits (859), Expect = e-107
 Identities = 125/625 (20%), Positives = 275/625 (44%), Gaps = 62/625 (9%)

Query: 1   MDETSLSPFSLCMHVCVLLHMLIYCLF--------------CYFCS-----VVAFLSDMS 41
           +D+ +L   S C  +  +L + +  +                YF       +   + D +
Sbjct: 30  VDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTEENLDYVIRDFA 89

Query: 42  GKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERA 101
            ++P Y+ A +FF SP+   L+  +   +  +  +  L+E+N  +   + + F  ++   
Sbjct: 90  DRTPTYEAAHLFFLSPVPDALMAKLAS-AKAVKYVKTLKEINTLFIPKEHRVFTLNEPHG 148

Query: 102 LEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPT 161
           L + +G   SS      ++ +  R++T+  ++   P+VRY +  +     +      +  
Sbjct: 149 LVQYYGSRSSS----YNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMA---MQLQK 201

Query: 162 KLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGN 221
           ++   V   L+  ++           + LILDR+VD  +P++HE TY A  +DLLN+E +
Sbjct: 202 EIDMSVSQGLINAREG------KLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIEND 255

Query: 222 KYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQ 281
            Y +       G  ++++V+L E D IW+++RH HI++   ++      F    +  Q  
Sbjct: 256 IYSYS-TVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGL 314

Query: 282 NGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDL 341
             S+ G       L+++++ LPQ+ EQ+ K SLH++++  IN     + +    + EQ++
Sbjct: 315 RDSQQGEG-GAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAF-SSTIDSCTKAEQNI 372

Query: 342 VFGDAGFKDVIKF-------LTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAK 394
           V  +    + ++        +     ++ E+KLR LM+   +        +  NL+  A 
Sbjct: 373 VTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCLML-CVLAKNGTSSHELNNLLDNAN 431

Query: 395 LTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYP 454
           +     +A+ N+ +LG  + + +             + ++     R   +  + LSR+ P
Sbjct: 432 IATPSRSAIYNLEMLGATVVADR-------------RGRKPKTMKRIERDMPYVLSRWTP 478

Query: 455 MIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRS 514
           ++++L+E +   +L  + YP + D          S    E     +  +R+   WA+ + 
Sbjct: 479 IVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNKG 538

Query: 515 SDDGYSSDSVLK-----HASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLG 569
           ++    S           A+   +    ++FVFI G  + +E+R  ++++     EV +G
Sbjct: 539 NNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIG 598

Query: 570 SSSLDDPPQFITKLKMLTAHELSLD 594
           + ++  P +F+  + +L   +  + 
Sbjct: 599 AHNIATPAEFVELVSLLDKADQDVQ 623
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592 Back     alignment and structure
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594 Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671 Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query598
1dn1_A594 NSEC1, syntaxin binding protein 1; protein-protein 100.0
3puk_A592 Syntaxin-binding protein 3; membrane trafficking, 100.0
2xhe_A650 UNC18; exocytosis, exocytosis complex, snare, neur 100.0
1epu_A591 S-SEC1; parallel beta-sheets, LEFT-hand turn conne 100.0
3c98_A606 Syntaxin-binding protein 1; protein complex, alter 100.0
1mqs_A671 SLY1 protein, SLY1P; SM-protein, snare, syntaxin, 100.0
1y9j_A159 SEC1 family domain containing protein 1; membrane 99.43
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A Back     alignment and structure
Probab=100.00  E-value=1.8e-95  Score=813.15  Aligned_cols=525  Identities=27%  Similarity=0.495  Sum_probs=426.7

Q ss_pred             CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCH
Q 007570            1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSG-KSPLYKKAFVFFSSPISR   60 (598)
Q Consensus         1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~i~Ft~~~~~   60 (598)
                      ||+.+.++|++||+.+      |+.+.             |||||+||.+||++|++||+. ..|+|++|||||++.+|+
T Consensus        33 lD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~  112 (594)
T 1dn1_A           33 VDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPD  112 (594)
T ss_dssp             ECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCCHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCH
T ss_pred             ECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCCHHHHHHHHHHHhcccccccceEEEEeCCCCCH
Confidence            5788889999999864      55554             999999999999999999974 247999999999999999


Q ss_pred             HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570           61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVR  140 (598)
Q Consensus        61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir  140 (598)
                      .+++.||+ .++.+.|++|.|+++||+|+|+++|||++|++|..+|.+..+ ......++++|++|+++|.++|.+|.||
T Consensus       113 ~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IR  190 (594)
T 1dn1_A          113 ALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKA-QMKNPILERLAEQIATLCATLKEYPAVR  190 (594)
T ss_dssp             HHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGGT-TSHHHHHHHHHHHHHHHHHHHTCCCEEC
T ss_pred             HHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCCccc-ccchHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            99999996 578999999999999999999999999999999999996432 2347789999999999999999999999


Q ss_pred             EccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCC---CCCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570          141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLN  217 (598)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~  217 (598)
                      |+|+..            .|+++|+.+++.|.++..+++.++   ..++++|||+||++|++|||+||||||||+||+||
T Consensus       191 y~~~~~------------~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~  258 (594)
T 1dn1_A          191 YRGEYK------------DNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLP  258 (594)
T ss_dssp             CCTTSH------------HHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSC
T ss_pred             ECCCch------------HHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccccccccccccHHHHHHHHhc
Confidence            987732            367889999988888775544432   23478999999999999999999999999999999


Q ss_pred             cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570          218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK  297 (598)
Q Consensus       218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  297 (598)
                      |++|.|+++.+.  .+..+++++.|+++|++|.++||+||++|+..|.+.+++|+++++..       ..+..+++||++
T Consensus       259 I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~-------~~~~~s~~dl~~  329 (594)
T 1dn1_A          259 IENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN-------TGEKTTMRDLSQ  329 (594)
T ss_dssp             CBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--------------CCSSCC
T ss_pred             ccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhc-------ccccCCHHHHHH
Confidence            999999998632  12344688999999999999999999999999999999998865421       024567789999


Q ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570          298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL  369 (598)
Q Consensus       298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL  369 (598)
                      ||++||+++++++.+++|++||++|++.+++ .|++++++||++++|.+.        .+.+.++|. ++.++..|||||
T Consensus       330 ~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL  407 (594)
T 1dn1_A          330 MLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILL-DANVSTYDKIRI  407 (594)
T ss_dssp             TTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcccchhHHHHHHHHHHHh-CCCCChHhHHHH
Confidence            9999999999999999999999999999987 899999999999998642        134566776 568999999999


Q ss_pred             HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570          370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL  449 (598)
Q Consensus       370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~  449 (598)
                      +|||++++ +|++++++.+|++++|++.+++.++.||+++|+...+...       .   .|.+.+.++. .+.++.|.+
T Consensus       408 ~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~~-------~---~k~~~~~~k~-~~~e~~Y~l  475 (594)
T 1dn1_A          408 ILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST-------L---RRRSKPERKE-RISEQTYQL  475 (594)
T ss_dssp             HHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCCG-------G---GCCCCCCCCC-CCCSCCCTT
T ss_pred             HHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccccc-------c---cccccccccc-CCCCcccee
Confidence            99999987 6999999999999999999999999999999987543211       0   1112222333 357899999


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570          450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS  529 (598)
Q Consensus       450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  529 (598)
                      |||+|++++++|++++|+|++++|||+.++++...+             .+..+.|+++|++.+.+.+            
T Consensus       476 sr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~-------------~~~~s~r~~~w~~~~~~~~------------  530 (594)
T 1dn1_A          476 SRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS-------------TTAVSARYGHWHKNKAPGE------------  530 (594)
T ss_dssp             CCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------------------------------
T ss_pred             eccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc-------------ccccccccccccccCCccc------------
Confidence            999999999999999999999999999765421100             1112335578987654321            


Q ss_pred             cccccCCCeEEEEEEcCCCHHHHHHHHHHHhhC-CCeEEEccCcccChhHHHHHHhccCCCC
Q 007570          530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDPPQFITKLKMLTAHE  590 (598)
Q Consensus       530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~~-~~~iiigsT~il~~~~fl~~l~~l~~~~  590 (598)
                         .+.++++||||+||+||+|+|++|++++.. |++|+||||+|+||++||++|..|++++
T Consensus       531 ---~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~~Fl~~l~~l~~~~  589 (594)
T 1dn1_A          531 ---YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKLNKTD  589 (594)
T ss_dssp             ----CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHHHHHHHHTTTTSCS
T ss_pred             ---cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHHHHHHHHHHhCCCc
Confidence               135789999999999999999999999986 4999999999999999999999999765
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Back     alignment and structure
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Back     alignment and structure
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A Back     alignment and structure
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Back     alignment and structure
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 598
d1epua_590 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor 1e-105
d1dn1a_589 e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no 1e-103
d1mqsa_653 e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha 1e-101
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  328 bits (841), Expect = e-105
 Identities = 150/616 (24%), Positives = 276/616 (44%), Gaps = 85/616 (13%)

Query: 1   MDETSLSPFSLCMHVCVLLHMLIYCLF--------------CYFC-----SVVAFLSDMS 41
           +D+ S+   S C  +  ++   I  +                Y       SV   ++D  
Sbjct: 29  VDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQ 88

Query: 42  G-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDER 100
              +P Y+ A +FF+     EL   + K ST    I  L+E+N+ +   +SQ F  D   
Sbjct: 89  NPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYESQIFSLDSPD 147

Query: 101 ALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVP 160
             +  + +   +Q         A +IAT+ A+L E+P VRYR+    +A    +F  LV 
Sbjct: 148 TFQVYY-NPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA----SFAQLVQ 202

Query: 161 TKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEG 220
            KL     +       T+   P  +  +LLILDR  D I+P++HE T+ A+ +DLL +E 
Sbjct: 203 QKL-----DAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLPIEN 257

Query: 221 NKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQI 280
           + Y  +  +       +KEVLL+E D +WVE+RH HIA  S+ + +K+  F  + +    
Sbjct: 258 DVY--KYVNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGT- 314

Query: 281 QNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQD 340
                       +DL ++++ +PQY +++ K S H+ +A    +  ++  + +L ++EQD
Sbjct: 315 -----AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQH-VDKLCKVEQD 368

Query: 341 LVFGDAGFKDVIKFLT-------AKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLA 393
           L  G     + I+            + I+  +K+R++++   I+      E    L++ A
Sbjct: 369 LAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILL-YIIHKGGISEENLAKLVQHA 427

Query: 394 KLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFY 453
            + A++   +N+M+ LG  +                ++K+R         + T+Q+SR+ 
Sbjct: 428 HIPAEEKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKER-------QADHTYQMSRWT 480

Query: 454 PMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPR 513
           P +++++E   +++L    YP +N   P              P+     S R   W + +
Sbjct: 481 PYMKDIMEAAVEDKLDTRHYPFLNGGGPR-------------PSCQQPVSVRYGHWHKDK 527

Query: 514 SSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLT--AKLNREVVLGSS 571
                               K G R+ +F+VGG + SE+R  +++T  AK N EV+LGS+
Sbjct: 528 GQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGST 572

Query: 572 SLDDPPQFITKLKMLT 587
            +  P   +  L+ ++
Sbjct: 573 HILTPEGLLRDLRKIS 588
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589 Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query598
d1epua_590 Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig 100.0
d1dn1a_589 Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax 100.0
d1mqsa_653 Sly1P protein {Baker's yeast (Saccharomyces cerevi 100.0
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

Probab=100.00  E-value=6.3e-86  Score=740.47  Aligned_cols=529  Identities=26%  Similarity=0.457  Sum_probs=417.6

Q ss_pred             CCCCCchhhhhhhhhc------cccee-------------EEEEEeCCHHHHHHHHHhhcC-CCCCcceEEEEecCCCCH
Q 007570            1 MDETSLSPFSLCMHVC------VLLHM-------------LIYCLFCYFCSVVAFLSDMSG-KSPLYKKAFVFFSSPISR   60 (598)
Q Consensus         1 ~~~~~~~~~~~~~~~~------~~~~~-------------aIY~i~Pt~~si~~i~~d~~~-~~~~Y~~~~i~Ft~~~~~   60 (598)
                      +|+..+++|++||..+      |+.+.             |||||+||.+||++|++||+. ..|+|+.|||+|++++|+
T Consensus        29 ~D~~t~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~~~aIy~i~Pt~eni~~i~~d~~~~~~~~Y~~~~i~F~~~~~~  108 (590)
T d1epua_          29 VDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPE  108 (590)
T ss_dssp             ECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCH
T ss_pred             EcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEECCCHHHHHHHHHHhhhhhcccCceEEEEECCCCCH
Confidence            4778889999988765      55444             999999999999999999974 358999999999999999


Q ss_pred             HHHHHHHhCCCccccccceeEEecceeeccCCceEeCCchhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHhCCccEEE
Q 007570           61 ELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVR  140 (598)
Q Consensus        61 ~~le~la~~~~~~~~i~~i~e~~~dfipld~~lfsl~~p~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir  140 (598)
                      .++++||+ .++++.|.+|.|+++||+|+|+++|||++|++|..+|.+... +.....++++|++|+++|.++|.+|.||
T Consensus       109 ~~l~~la~-~~~~~~i~~i~e~~~df~~l~~~lfsl~~~~~~~~~~~~~~~-~~~~~~l~~ia~~L~sl~~~lg~~P~Ir  186 (590)
T d1epua_         109 ELFKELCK-STTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRA-QGGIPNKERCAEQIATLCATLGEYPSVR  186 (590)
T ss_dssp             HHHHHHHH-STTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGGGS-TTCHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             HHHHHHHh-ccccccCCeEEEEecceEeCCCCEEEecCCcHHHHhcCcchh-hcchhHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999996 578899999999999999999999999999999999974321 2235788999999999999999999999


Q ss_pred             EccCCccchhhhhcccchhHHHHHHHHHHHHHHhhhhcCCCCC---CCCceEEEecCCCCccchhhhhhhhhHHhhhhcc
Q 007570          141 YRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM---SETCELLILDRSVDQIAPIIHEWTYDAICHDLLN  217 (598)
Q Consensus       141 ~~~~~~~~a~~~~~~~~~v~~~la~~l~~~l~~~~~~~~~~~~---~~~~~LiIlDR~~DliTPLlh~~TYqaLl~dl~~  217 (598)
                      |+|+..            .|.++|+.+++.|+.+..+++.++.   .++++|||+||++|++|||+||||||||+||+||
T Consensus       187 ~~~~~~------------~~~~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliTPLlh~~TYqaLi~e~~~  254 (590)
T d1epua_         187 YRSDFD------------ENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELTFQAMAYDLLP  254 (590)
T ss_dssp             ECTTST------------HHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCSSGGGSCCCBHHHHHHHHSC
T ss_pred             EeCCch------------HHHHHHHHHHHHHHHHhhcCccccCCCCCCCceEEEEeccccccccccccccHHHHHHHHhc
Confidence            988742            4567888888888887765544432   3478999999999999999999999999999999


Q ss_pred             cCCCeEEeeccCCCCCCCcceEEecCCCChhHHHhhcCcHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHH
Q 007570          218 LEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQK  297 (598)
Q Consensus       218 I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~i~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  297 (598)
                      |++|.|++...  .++..+++.+.++..|++|.++||+||++|+..|.+++++|+++++.  .    .+.+..+++||++
T Consensus       255 I~~n~v~~~~~--~~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~--~----~~~~~~~~~~l~~  326 (590)
T d1epua_         255 IENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRM--G----TAADKAGIKDLSQ  326 (590)
T ss_dssp             CBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------------CCCCCHH
T ss_pred             ccCCeeEecCC--CCCCCcceeeecCCcchHHHHHhcccHHHHHHHHHHHHHHHHHHhhh--h----ccccccCHHHHHH
Confidence            99999998753  23234457788999999999999999999999999999999876542  1    1234557789999


Q ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc--------hHHHHHHhhhcCCCChhhHHHH
Q 007570          298 LVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--------FKDVIKFLTAKEDITRENKLRL  369 (598)
Q Consensus       298 ~v~~lp~~~~~~~~l~~H~~l~~~~~~~i~~~~l~~~~~lEq~i~~~~~~--------~~~l~~~i~~~~~~~~~dklRL  369 (598)
                      +|+++|+++++++.+++|++|+++|++.+++ .+.+++++||++++|.+.        ..++++.+. +...+.+|+|||
T Consensus       327 ~v~~lp~~~~~~~~l~~H~~i~~~l~~~i~~-~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~d~LRL  404 (590)
T d1epua_         327 MLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILL-DQKISAYDKIRI  404 (590)
T ss_dssp             HHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBCTTSCBCCCCHHHHHHHHT-CTTSCHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCcchhhHhHHHHHHHHHHh-CCCCCHHHHHHH
Confidence            9999999999999999999999999999975 699999999999988532        246677776 578999999999


Q ss_pred             HHHHHHhcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHHhcCccccCCcccCcCccchhhhhhhhhcccCCCCCCccccc
Q 007570          370 LMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETWQL  449 (598)
Q Consensus       370 l~L~~l~~~~g~~~~~~~~l~q~~gl~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~  449 (598)
                      +|||++++ +|++++++.++++..+++.++..++.+|+.+|+...+.... ..+...+      ........+.+.+|++
T Consensus       405 l~l~~l~~-~g~~~~~~~~l~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~-~~~~~~~------~~~~~~~~~~d~~y~~  476 (590)
T d1epua_         405 ILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGGR-RKIPQPY------HTHNRKERQADHTYQM  476 (590)
T ss_dssp             HHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTS-CCCCCTT------SGGGSCCCCSCCSCGG
T ss_pred             HHHHHHhc-cCCChHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc-cccchhh------hccccccCCcccccee
Confidence            99999998 68999889999999899989999999999999876532211 1111111      1111223467899999


Q ss_pred             ccchhHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCcccCCCCCCCCCCccccccccc
Q 007570          450 SRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHAS  529 (598)
Q Consensus       450 s~y~P~i~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  529 (598)
                      +||+|+++++++.+++++|++..||++....+....             ......+.+.|.+.....             
T Consensus       477 s~y~Pli~~lve~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~-------------  530 (590)
T d1epua_         477 SRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSC-------------QQPVSVRYGHWHKDKGQA-------------  530 (590)
T ss_dssp             GCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------------------------------
T ss_pred             ecchHHHHHHHHHHHhCCCCccccccccCCCCCccc-------------ccccccccCcccCCCCcc-------------
Confidence            999999999999999999999999998643321110             011111223344322211             


Q ss_pred             cccccCCCeEEEEEEcCCCHHHHHHHHHHHhh--CCCeEEEccCcccChhHHHHHHhccCCC
Q 007570          530 SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAK--LNREVVLGSSSLDDPPQFITKLKMLTAH  589 (598)
Q Consensus       530 ~~~~~~~~~viVFviGGvTy~Ei~al~~L~~~--~~~~iiigsT~il~~~~fl~~l~~l~~~  589 (598)
                        ....++++||||||||||+|+|+||+|+++  .|++|+||||+|+||++||++|.+|+.+
T Consensus       531 --~~~~~~~viVfvvGGvTy~Ei~~l~~l~~~~~~~~~iiiGsT~i~n~~~fl~~l~~l~~~  590 (590)
T d1epua_         531 --SYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRKISNP  590 (590)
T ss_dssp             ----CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHHHHHHHHHTTSCC
T ss_pred             --ccCCCCEEEEEEECCcCHHHHHHHHHHHHhhCCCcEEEEEeCCeecHHHHHHHHHhhcCC
Confidence              113568899999999999999999999986  4799999999999999999999999864
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure