Citrus Sinensis ID: 007577
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | 2.2.26 [Sep-21-2011] | |||||||
| Q7RTR2 | 1065 | Protein NLRC3 OS=Homo sap | yes | no | 0.716 | 0.401 | 0.360 | 1e-53 | |
| Q5DU56 | 1064 | Protein NLRC3 OS=Mus musc | yes | no | 0.705 | 0.395 | 0.340 | 3e-46 | |
| P29315 | 456 | Ribonuclease inhibitor OS | yes | no | 0.648 | 0.848 | 0.264 | 2e-27 | |
| Q91VI7 | 456 | Ribonuclease inhibitor OS | no | no | 0.604 | 0.791 | 0.274 | 3e-26 | |
| P10775 | 456 | Ribonuclease inhibitor OS | no | no | 0.613 | 0.802 | 0.264 | 6e-26 | |
| Q647I9 | 1098 | NACHT, LRR and PYD domain | no | no | 0.576 | 0.313 | 0.281 | 1e-25 | |
| P13489 | 461 | Ribonuclease inhibitor OS | no | no | 0.680 | 0.880 | 0.267 | 6e-24 | |
| Q9LE82 | 535 | RAN GTPase-activating pro | no | no | 0.621 | 0.693 | 0.262 | 1e-23 | |
| Q8HZP9 | 461 | Ribonuclease inhibitor OS | no | no | 0.680 | 0.880 | 0.267 | 2e-23 | |
| Q8BHB0 | 953 | Nucleotide-binding oligom | no | no | 0.365 | 0.228 | 0.32 | 3e-23 |
| >sp|Q7RTR2|NLRC3_HUMAN Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 156/433 (36%), Positives = 232/433 (53%), Gaps = 5/433 (1%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
S+ L +L + + F D + L L G + +++S A N I+ G K
Sbjct: 625 SQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAK 684
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
A L N +L +L+L GN IG +G K L D L N + L L +RD+GA+++AE
Sbjct: 685 ALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAE 744
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
L +N L +L L N I G +A+AL +N +++ L + N G GA ALA+ L+
Sbjct: 745 ALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKV 804
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
N+ L L L NSI D G+ ALM L + + L+ L + NSIS +GA +A + +
Sbjct: 805 NQGLESLDLQSNSISDAGVAALMGALCTNQTLLS-LSLRENSISPEGAQAIAHALCANST 863
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L ++L N + D+GA IA A+++NRT+T++ L N I + A A+ + L+ N +TSL
Sbjct: 864 LKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSL 923
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
DL N IG DGA A++ LK + + L L IGASGA+ + + L N T+ ILDLR
Sbjct: 924 DLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRG 983
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
N + GAK LA + K VN +L ++L N + DGA IA AL N + +NL N
Sbjct: 984 NAIGVAGAKALANALK-VNSSLRRLNLQENSLGMDGAICIATALSGNHR--LQHINLQGN 1040
Query: 569 FLTKFGQSALTDA 581
+ G +++A
Sbjct: 1041 HIGDSGARMISEA 1053
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Homo sapiens (taxid: 9606) |
| >sp|Q5DU56|NLRC3_MOUSE Protein NLRC3 OS=Mus musculus GN=Nlrc3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 146/429 (34%), Positives = 224/429 (52%), Gaps = 8/429 (1%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
S+ L +L S+ + F D + L L G + ++S A N I G K
Sbjct: 624 SQHVLQSLLPQLLYCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAK 683
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
A L N +L TL+L N IG G K L D L N + L L S ++D+G +AE
Sbjct: 684 ALARSLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAE 743
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
L +N + +L+L N+I G +A+AL +N ++++L + N G GA ALA+ L+
Sbjct: 744 ALVSNQTISMLQLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKV 803
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
N+ L L L NSI D G+ LM L S + L+ L++ NSIS +GA + + + +
Sbjct: 804 NQILENLDLQSNSISDMGVTVLMRALCSNQ-TLSSLNLRENSISPEGAQALTQALCRNNT 862
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L ++L N + D GA+ IA A+ +N ++T + L N I + A A+ + L+ N +T+L
Sbjct: 863 LKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTL 922
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
DL N IG +GA +++ LK + + L L IG+ GA+ + + L N T+ ILDLR
Sbjct: 923 DLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRG 982
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
N + GAK LA + K +N +L ++L N + DGA +A AL N + +NL N
Sbjct: 983 NDVGAAGAKALANALK-LNSSLRRLNLQENSLGMDGAIFVASALSENH--GLHHINLQGN 1039
Query: 569 FLTKFGQSA 577
G+SA
Sbjct: 1040 ---PIGESA 1045
|
May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated after T-cell stimulation. Delays degradation of NFKBIA/IKBA. Mus musculus (taxid: 10090) |
| >sp|P29315|RINI_RAT Ribonuclease inhibitor OS=Rattus norvegicus GN=Rnh1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 191/397 (48%), Gaps = 10/397 (2%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S +T AG VL+S L
Sbjct: 52 ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GDEG+K LC+ L D +E+LQL +L + +A +L+ + L
Sbjct: 111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L+NN +G +L + L +++ + SL L + L + SL+EL L
Sbjct: 171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL SGL +L L + + ++A+G + ++ +SL ++L N+
Sbjct: 231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290
Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA+ + ++ L+ + ++ + ++ + VL N + L ++ NP+G
Sbjct: 291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
G L + L + + L LG C + SG +A +L N ++ LDL N + D G
Sbjct: 351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDNGV 410
Query: 517 KCLAQSFK---VVNEALTSIDLAFNEIRDDGAFAIAQ 550
L +S K + + L D+ + + +D A+ +
Sbjct: 411 LQLLESLKQPSCILQQLVLYDIYWTDEVEDQLRALEE 447
|
Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. Rattus norvegicus (taxid: 10116) |
| >sp|Q91VI7|RINI_MOUSE Ribonuclease inhibitor OS=Mus musculus GN=Rnh1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 178/368 (48%), Gaps = 7/368 (1%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S G+T AG G+L+S L
Sbjct: 52 ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 110
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GD G+K LC+ L D +E+LQL +L + +A +L+ + + L
Sbjct: 111 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 170
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L+NN + G L + L +++ + SL L A L + SL+EL L
Sbjct: 171 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 230
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL GL KL L + I+A+G + ++ +SL ++L N+
Sbjct: 231 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 290
Query: 399 IGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA + ++ L+ + ++ + ++ + VL + + L ++ NP+G
Sbjct: 291 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 350
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
+G + L + L + L LG C + SG +A++L N ++ LDL N + G
Sbjct: 351 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 410
Query: 517 KCLAQSFK 524
L +S K
Sbjct: 411 LQLLESLK 418
|
Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. Mus musculus (taxid: 10090) |
| >sp|P10775|RINI_PIG Ribonuclease inhibitor OS=Sus scrofa GN=RNH1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 176/374 (47%), Gaps = 8/374 (2%)
Query: 150 SKQTLNEFAKELRA---FSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAA 205
+++ + LRA + + + GD G+ + + L +++S +T A
Sbjct: 36 TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEA 95
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAK 264
G L+S L+ L+LS NP+GD G++ LC+ L+D +E+LQL L +
Sbjct: 96 GCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCE 155
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
+A +L+ L+ L ++NN I +G L + L +++ + +L L L
Sbjct: 156 PLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLC 215
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
+ SLREL L N +GD GI L GL S +L L + I+A G + +
Sbjct: 216 GIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVL 275
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN 442
+ ++L ++L N +GDEGA + ++L Q + ++ + ++ + ++ +L N
Sbjct: 276 QAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQN 335
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTI 501
+ L L+ N +G G + L + L G + L LG C++ SG +A +L N ++
Sbjct: 336 KHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRSL 395
Query: 502 SILDLRANGLRDEG 515
LDL N + D G
Sbjct: 396 RELDLSNNCVGDPG 409
|
Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. Sus scrofa (taxid: 9823) |
| >sp|Q647I9|NALP5_BOVIN NACHT, LRR and PYD domains-containing protein 5 OS=Bos taurus GN=NLRP5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 4/348 (1%)
Query: 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIAL 220
R + +D++G +E + E+L + Q A E + G+T A + VL ++ +L
Sbjct: 736 RNITRLDLTGCRLREEDVQTACEALRHPQCALESLRLDRCGLTPASCREISQVLATSGSL 795
Query: 221 KTLNLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
K+L+L+GN + D+GVK LCD L V +++L L S L + +A L N L L
Sbjct: 796 KSLSLTGNKVADQGVKSLCDALKVTPCTLQKLILGSCGLTAATCQDLASALIENQGLTHL 855
Query: 280 ELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L+ + + G + L A+ L + ++ L LN G LA L GN+ L L L
Sbjct: 856 SLSGDELGSKGMSLLCRAVKLSSCGLQKLALNACSLDVAGCGFLAFALMGNRHLTHLSLS 915
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N + D G+ L + L LD+ N ++A ++ I L ++L N
Sbjct: 916 MNPLEDPGMNLLCEVMMEPSCPLRDLDLVNCRLTASCCKSLSNVITRSPRLRSLDLAANA 975
Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
+GDEG + + LKQ T+T + L + S+G A++ L + + SL+L N +G
Sbjct: 976 LGDEGIAALCEGLKQKNTLTRLGLEACGLTSEGCKALSAALTCSRHLASLNLMRNDLGPR 1035
Query: 459 GAKAL-SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505
G L S + N+ T+ L Q A + + R + I D
Sbjct: 1036 GMTTLCSAFMHPTSNLQTIGLWKEQYPARVRRLLEQVQRLKPHVVISD 1083
|
As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress beyond the first embryonic cell divisions. Bos taurus (taxid: 9913) |
| >sp|P13489|RINI_HUMAN Ribonuclease inhibitor OS=Homo sapiens GN=RNH1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 178/415 (42%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 5 IQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 224 NLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
NL N +GD GV C+ L + +++L L + L G ++ L+ L+ L L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
+N++ +G L E LL+ + L L A LA L +EL + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414
|
Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. Homo sapiens (taxid: 9606) |
| >sp|Q9LE82|RAGP1_ARATH RAN GTPase-activating protein 1 OS=Arabidopsis thaliana GN=RANGAP1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 109/415 (26%), Positives = 186/415 (44%), Gaps = 44/415 (10%)
Query: 94 PAGVFVSATFVLWKLVEKLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTG--KLF---R 148
P G SA V K KL++ R + +E V ++ +G + F
Sbjct: 77 PDGDGTSAVHVYAKESSKLMLDVIKRGPQEESE---VEVSKDGDVFFDISGGSRAFIEEE 133
Query: 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLG--YNQTAE-EVS-FAANGITA 204
E++ L A +++ + S R+FG E F A L +Q E ++S F A A
Sbjct: 134 EARDLLRPLADPRNSYTKIRFSNRSFGSEAAKFAASVLSSIKDQLTEVDLSDFVAGRPEA 193
Query: 205 AGIKA---FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261
++ F L+ + L+ LNLS N +G++G++ ++ +E L L + + ++
Sbjct: 194 EALEVMNMFSSALEGS-KLRYLNLSDNALGEKGIRAFASLINSQHDLEELYLMNDGISED 252
Query: 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321
A+A+ ELL + +RVL+ +NNM G T++AE + E ++ + G+ G A
Sbjct: 253 AARAVRELLPSTDKIRVLQFHNNMTGDEGATAIAEIVRECPSLEDFRCSSTRIGSEGGVA 312
Query: 322 LAKGLEGNKSLRELHLHGNSIG----------------------------DEGIRALMSG 353
LA+ LE L++L L N G DEG AL
Sbjct: 313 LAEALEHCSHLKKLDLRDNMFGVEGGIALAKTLSVLTHLTEIYMSYLNLEDEGTEALSEA 372
Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
L L VL++ N I+ K ++A I + +SL +NL N++ DEG IA A++
Sbjct: 373 LLKSAPSLEVLELAGNDITVKSTGNLAACIASKQSLAKLNLSENELKDEGTILIAKAVEG 432
Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468
+ + +DL N I GA A+A+ + + L++ N I +G ++++ K
Sbjct: 433 HDQLVEVDLSTNMIRRAGARALAQTVVKKNTFKLLNINGNFISEEGIDEVNDMFK 487
|
GTPase activator for the nuclear Ras-related regulatory protein Ran, converting it to the putatively inactive GDP-bound state. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8HZP9|RINI_PANTR Ribonuclease inhibitor OS=Pan troglodytes GN=RNH1 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 178/415 (42%), Gaps = 9/415 (2%)
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
S+D+ D AE L Q + V G+T A K L+ N AL L
Sbjct: 5 IQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61
Query: 224 NLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
NL N +GD GV C+ L + +++L L + L G ++ L+ L+ L L+
Sbjct: 62 NLRSNELGDVGVHCVLQGLQSPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
+N++ +G L E LL+ + L L A LA L +EL + N
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCNLSAASCKPLASVLRAKPDFKELTVSNND 181
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
I + G+R L GL +L L + + +++ + + + SL + L N +GD
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 402 EG-AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
G AE L + + T+ + I +KG + RVL+ + L LA N +G +GA
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 461 KALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
+ L E L G + +L + C A+ + +L N + L + N L D G + L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNKFLLELQISNNRLEDAGVQEL 361
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
Q L + LA ++ D ++A L AN ++ L+L+NN L G
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAG 414
|
Ribonuclease inhibitor which inhibits RNASE1, RNASE2 and ANG. May play a role in redox homeostasis. Pan troglodytes (taxid: 9598) |
| >sp|Q8BHB0|NOD1_MOUSE Nucleotide-binding oligomerization domain-containing protein 1 OS=Mus musculus GN=Nod1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 7/225 (3%)
Query: 346 GIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405
G++ L S +L V+ + N I+ G + E + K + ++ LY N I D GA
Sbjct: 719 GVQELQPCFS----RLTVIRLSVNQITDTGVKVLCEELTKYKIVTFLGLYNNQITDIGAR 774
Query: 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465
+A L + R + + LG N I S+G +A +K+++ I + + N IG +GAKA +E
Sbjct: 775 YVAQILDECRGLKHLKLGKNRITSEGGKCVALAVKNSTSIVDVGMWGNQIGDEGAKAFAE 834
Query: 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV 525
LK H ++ TL L + I G + +A L+ N T++++ L N L DE A+C A+ +
Sbjct: 835 ALKDHPSLTTLSLAFNGISPEGGKSLAQALKQNTTLTVIWLTKNELNDESAECFAEMLR- 893
Query: 526 VNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
VN+ L + L N I G +A+AL+ N A+T + L N +
Sbjct: 894 VNQTLRHLWLIQNRITAKGTAQLARALQKN--TAITEICLNGNLI 936
|
Enhances caspase-9-mediated apoptosis. Induces NF-kappa-B activity via RIPK2 and IKK-gamma. Confers responsiveness to intracellular bacterial lipopolysaccharides (LPS). Forms an intracellular sensing system along with ARHGEF2 for the detection of microbial effectors during cell invasion by pathogens. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | ||||||
| 296086512 | 630 | unnamed protein product [Vitis vinifera] | 0.988 | 0.936 | 0.713 | 0.0 | |
| 255558382 | 607 | leucine rich repeat-containing protein, | 0.988 | 0.971 | 0.718 | 0.0 | |
| 356501981 | 606 | PREDICTED: protein NLRC3-like [Glycine m | 0.998 | 0.983 | 0.710 | 0.0 | |
| 359473416 | 684 | PREDICTED: protein NLRC3-like [Vitis vin | 0.968 | 0.845 | 0.733 | 0.0 | |
| 357486129 | 606 | Nucleotide-binding oligomerization domai | 0.993 | 0.978 | 0.707 | 0.0 | |
| 297843864 | 605 | EMB2004 [Arabidopsis lyrata subsp. lyrat | 0.993 | 0.980 | 0.711 | 0.0 | |
| 18391166 | 605 | leucine-rich repeats-ribonuclease inhibi | 0.993 | 0.980 | 0.711 | 0.0 | |
| 356498020 | 606 | PREDICTED: protein NLRC3-like [Glycine m | 0.998 | 0.983 | 0.700 | 0.0 | |
| 258678027 | 614 | chloroplast envelope protein 1 [Nicotian | 0.996 | 0.969 | 0.675 | 0.0 | |
| 449452044 | 602 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.981 | 0.973 | 0.680 | 0.0 |
| >gi|296086512|emb|CBI32101.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/631 (71%), Positives = 507/631 (80%), Gaps = 41/631 (6%)
Query: 3 STSTISLYSHP-------------------KLSHRAQPVLSRS---------FCQARDAP 34
STS I LYSHP ++SHRA+P RS +C A
Sbjct: 5 STSAICLYSHPMVLSSSSSQSPNLTFCSDSQISHRARPRNLRSQVLGSSWWGYC----AL 60
Query: 35 LSFALPFSGTRRCFRLKRLVVKAAARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIAS 90
L ++ S R +R + LV AA+ +G R+ RRV++QSQ L+ PV++IAS
Sbjct: 61 LPTSVYVSSIRH-YRFRTLVTVAASTADGVPRRPVSGRRVFKQSQGQGPLSPVPVREIAS 119
Query: 91 FVVPAGVFVSATFVLWKLVEKLLMPKPSRPSKPTA----EGMNWSVGAGTNLLSGFTGKL 146
FVVPA +F + TFVLW+LVEK+L+PK SR S G+ WS GTNLL+G T K
Sbjct: 120 FVVPASLFFAVTFVLWRLVEKILLPKSSRSSSLEKKSSSPGVKWSFAPGTNLLAGLTAKF 179
Query: 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAG 206
RESKQ LNEFAKE+R+F SVDMSGRNFGDEGLFFLAESL YNQ AEEVSFAANGITAAG
Sbjct: 180 DRESKQKLNEFAKEIRSFGSVDMSGRNFGDEGLFFLAESLAYNQNAEEVSFAANGITAAG 239
Query: 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
+KAFDGVLQSNI LKTL+LSGNPIGDEG KCLCDIL+DNAG+++LQL+S DL DEGAKAI
Sbjct: 240 LKAFDGVLQSNIVLKTLDLSGNPIGDEGAKCLCDILIDNAGIQKLQLNSADLGDEGAKAI 299
Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326
AE+LK NS LR++ELNNNMIDYSGFTSL ALLEN+TIR++HLNGNYGGALG ALAKGL
Sbjct: 300 AEMLKKNSSLRIVELNNNMIDYSGFTSLGGALLENNTIRNIHLNGNYGGALGVAALAKGL 359
Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
E NKSLRELHLHGNSIGDEG+R LMSGLSS KGKL +LDIGNN IS++GAFHVAEYIK
Sbjct: 360 EANKSLRELHLHGNSIGDEGVRVLMSGLSSHKGKLTLLDIGNNEISSRGAFHVAEYIKKA 419
Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446
KSLLW+NLYMNDIGDEGAEKIADALK+NR+I TIDLGGNNIH+KG S IA VLKDN+VIT
Sbjct: 420 KSLLWLNLYMNDIGDEGAEKIADALKENRSIATIDLGGNNIHAKGVSKIAGVLKDNTVIT 479
Query: 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
+L+L YNPIG +GAKALSEVLKFHG I TLKLGWCQIGA GAEF+AD L+YN TIS LDL
Sbjct: 480 TLELGYNPIGPEGAKALSEVLKFHGKIKTLKLGWCQIGAKGAEFIADTLKYNTTISTLDL 539
Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566
RANGLRDEGA CLA+S KVVNEAL S+DL FNEIRD+GAFAIAQALKANEDVAVTSLNLA
Sbjct: 540 RANGLRDEGAVCLARSMKVVNEALASLDLGFNEIRDEGAFAIAQALKANEDVAVTSLNLA 599
Query: 567 NNFLTKFGQSALTDAKDLVYEMSEKEVNIFF 597
+NFLTKFGQSALTDA+D VYEMSEKEVNIFF
Sbjct: 600 SNFLTKFGQSALTDARDHVYEMSEKEVNIFF 630
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558382|ref|XP_002520218.1| leucine rich repeat-containing protein, putative [Ricinus communis] gi|223540710|gb|EEF42273.1| leucine rich repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/614 (71%), Positives = 499/614 (81%), Gaps = 24/614 (3%)
Query: 1 MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRC---------FRLK 51
MGS ST SLY HPK+S R Q S + LSF + + R +
Sbjct: 1 MGSISTHSLYFHPKISLRLQ-----SEPRVHGGLLSFPNTIATSFTTTTTSRRRNFLRFR 55
Query: 52 RLVVKAAARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWK 107
L V+AAA +GG R+ RRVYRQSQ ++AL APV+QIAS V+PAG F+ TFVLWK
Sbjct: 56 SLTVRAAA--DGGSRRAASGRRVYRQSQGESALPNAPVQQIASVVMPAGAFLVVTFVLWK 113
Query: 108 LVEKLLMPKPSRPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRA 163
LVEK++MPKP R + K ++GMNWS AG+NL G T K+ RESKQ LNEFAKELR+
Sbjct: 114 LVEKMMMPKPKRAAIVENKSPSKGMNWSFAAGSNLFPGLTAKIDRESKQKLNEFAKELRS 173
Query: 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
FS VDMSG NFGDEGLFFLAES+ YNQT EEVSFAANGITA G+KAFD VLQSNI LKTL
Sbjct: 174 FSIVDMSGCNFGDEGLFFLAESIAYNQTLEEVSFAANGITAEGVKAFDRVLQSNIVLKTL 233
Query: 224 NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN 283
NLSGNPIGD+G K L DIL DNAG+E+LQL+S DL DEGAKAIA+LLK N LRV+ELNN
Sbjct: 234 NLSGNPIGDDGAKSLSDILADNAGIEKLQLNSTDLGDEGAKAIADLLKKNPNLRVIELNN 293
Query: 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
NMIDYSGFTSLA + LEN+T+RS++LNGNYGGALGANAL+KG+EGNK+LRELHL GNSIG
Sbjct: 294 NMIDYSGFTSLAGSFLENATLRSIYLNGNYGGALGANALSKGIEGNKALRELHLQGNSIG 353
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
DEG+RALMSGLSS K KL LDIGNNS+SAKGAFHVAEYIK KSL W+N+YMNDIGDEG
Sbjct: 354 DEGVRALMSGLSSSKAKLTHLDIGNNSLSAKGAFHVAEYIKKSKSLFWMNMYMNDIGDEG 413
Query: 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
AEKIADALKQNR++ IDLGGNNIH+KG S IA+VLKDNS+IT+L++ YNPIG DGAKAL
Sbjct: 414 AEKIADALKQNRSLANIDLGGNNIHAKGISEIAQVLKDNSIITTLEVGYNPIGPDGAKAL 473
Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523
SEVLKFHGN+ LKLGWCQIGA GAE +AD L+YNNTISILDLR NGLRDEGA CLA+S
Sbjct: 474 SEVLKFHGNVKALKLGWCQIGAKGAEDIADTLKYNNTISILDLRGNGLRDEGAICLARSL 533
Query: 524 KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 583
VVNE LT +DL FNEIRDDGAFAIAQALKANEDV +TSLNLANNFLTKFGQSAL+DA+D
Sbjct: 534 TVVNEVLTELDLGFNEIRDDGAFAIAQALKANEDVKITSLNLANNFLTKFGQSALSDARD 593
Query: 584 LVYEMSEKEVNIFF 597
VYEM+EKEVNI F
Sbjct: 594 HVYEMNEKEVNIVF 607
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501981|ref|XP_003519801.1| PREDICTED: protein NLRC3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/607 (71%), Positives = 504/607 (83%), Gaps = 11/607 (1%)
Query: 1 MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAAR 60
M TST+S+YSHP++ Q + S F A A + LP RR + V + ++
Sbjct: 1 MAFTSTLSIYSHPQVRLLNQRLQSLPFTAAGVAQFA-PLPPLNRRRTCSPRSFVFRVSSS 59
Query: 61 PEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPK 116
EG R + RRVYRQSQ+ L++APVKQIA+ V P F + TFV+WKLVEKLL+P
Sbjct: 60 VEGSRARSGGSRRVYRQSQASAPLSSAPVKQIANVVAPVAAFFALTFVIWKLVEKLLVPT 119
Query: 117 PSR------PSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
P + S+ ++G+ WS AGTNLLS K+ R+SKQ LNEFA+ELR+FSS+DMS
Sbjct: 120 PKQLKSLTVESQSPSQGLKWSFAAGTNLLSQLGEKIERQSKQKLNEFARELRSFSSIDMS 179
Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
GRNFGDEGLFFLAESL +NQTAEEVSFAANGITAAG++AFDGVLQSNI LKTL+LSGN +
Sbjct: 180 GRNFGDEGLFFLAESLAFNQTAEEVSFAANGITAAGLRAFDGVLQSNITLKTLDLSGNLV 239
Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
GDEG KCLCDILV+N+ +E+LQL+S DL DEGAKAIAE+LK NS LRVLELNNNMI+YSG
Sbjct: 240 GDEGAKCLCDILVNNSSIEKLQLNSADLGDEGAKAIAEMLKKNSSLRVLELNNNMIEYSG 299
Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
F+SLA ALLEN++IR++HLNGNYGGALGANALAK LE NKSLRELHLHGNSIGDEGIR+L
Sbjct: 300 FSSLAGALLENNSIRNIHLNGNYGGALGANALAKALESNKSLRELHLHGNSIGDEGIRSL 359
Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
M+GLSS KGKL +LDIGNNS++AKGAFHVAEYIK KSLLW+NLYMNDIGDEGAEKIA A
Sbjct: 360 MTGLSSHKGKLTLLDIGNNSLTAKGAFHVAEYIKKSKSLLWLNLYMNDIGDEGAEKIAVA 419
Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
LK+NR+I+T+DLGGNNIH G +AIA+VLKDN VIT+L+L+YNPIG DGAKAL+EVLKFH
Sbjct: 420 LKENRSISTLDLGGNNIHVDGVNAIAQVLKDNLVITTLELSYNPIGPDGAKALAEVLKFH 479
Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
GNI TLKLGWCQIGA GAEF+AD L+YN TISILDLRANGLRDEGA+ LA+S KVVNEAL
Sbjct: 480 GNIKTLKLGWCQIGAKGAEFIADALKYNTTISILDLRANGLRDEGAQSLARSLKVVNEAL 539
Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSE 590
TS+DL FNEIRDDGAFAIAQALK+N+DVAVTSLN+ +NFLTKFGQ AL DA+D V EM+E
Sbjct: 540 TSLDLGFNEIRDDGAFAIAQALKSNDDVAVTSLNIGSNFLTKFGQGALADARDHVLEMTE 599
Query: 591 KEVNIFF 597
KE+NIF
Sbjct: 600 KEINIFL 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473416|ref|XP_002266381.2| PREDICTED: protein NLRC3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/600 (73%), Positives = 496/600 (82%), Gaps = 22/600 (3%)
Query: 15 LSHRAQPVLSRS---------FCQARDAPLSFALPFSGTRRCFRLKRLVVKAAARPEGGR 65
+SHRA+P RS +C P S + + R +R + LV AA+ +G
Sbjct: 90 ISHRARPRNLRSQVLGSSWWGYCAL--LPTSV---YVSSIRHYRFRTLVTVAASTADGVP 144
Query: 66 RQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPSRPS 121
R+ RRV++QSQ L+ PV++IASFVVPA +F + TFVLW+LVEK+L+PK SR S
Sbjct: 145 RRPVSGRRVFKQSQGQGPLSPVPVREIASFVVPASLFFAVTFVLWRLVEKILLPKSSRSS 204
Query: 122 KPTA----EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDE 177
G+ WS GTNLL+G T K RESKQ LNEFAKE+R+F SVDMSGRNFGDE
Sbjct: 205 SLEKKSSSPGVKWSFAPGTNLLAGLTAKFDRESKQKLNEFAKEIRSFGSVDMSGRNFGDE 264
Query: 178 GLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237
GLFFLAESL YNQ AEEVSFAANGITAAG+KAFDGVLQSNI LKTL+LSGNPIGDEG KC
Sbjct: 265 GLFFLAESLAYNQNAEEVSFAANGITAAGLKAFDGVLQSNIVLKTLDLSGNPIGDEGAKC 324
Query: 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297
LCDIL+DNAG+++LQL+S DL DEGAKAIAE+LK NS LR++ELNNNMIDYSGFTSL A
Sbjct: 325 LCDILIDNAGIQKLQLNSADLGDEGAKAIAEMLKKNSSLRIVELNNNMIDYSGFTSLGGA 384
Query: 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSR 357
LLEN+TIR++HLNGNYGGALG ALAKGLE NKSLRELHLHGNSIGDEG+R LMSGLSS
Sbjct: 385 LLENNTIRNIHLNGNYGGALGVAALAKGLEANKSLRELHLHGNSIGDEGVRVLMSGLSSH 444
Query: 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
KGKL +LDIGNN IS++GAFHVAEYIK KSLLW+NLYMNDIGDEGAEKIADALK+NR+I
Sbjct: 445 KGKLTLLDIGNNEISSRGAFHVAEYIKKAKSLLWLNLYMNDIGDEGAEKIADALKENRSI 504
Query: 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477
TIDLGGNNIH+KG S IA VLKDN+VIT+L+L YNPIG +GAKALSEVLKFHG I TLK
Sbjct: 505 ATIDLGGNNIHAKGVSKIAGVLKDNTVITTLELGYNPIGPEGAKALSEVLKFHGKIKTLK 564
Query: 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537
LGWCQIGA GAEF+AD L+YN TIS LDLRANGLRDEGA CLA+S KVVNEAL S+DL F
Sbjct: 565 LGWCQIGAKGAEFIADTLKYNTTISTLDLRANGLRDEGAVCLARSMKVVNEALASLDLGF 624
Query: 538 NEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKEVNIFF 597
NEIRD+GAFAIAQALKANEDVAVTSLNLA+NFLTKFGQSALTDA+D VYEMSEKEVNIFF
Sbjct: 625 NEIRDEGAFAIAQALKANEDVAVTSLNLASNFLTKFGQSALTDARDHVYEMSEKEVNIFF 684
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486129|ref|XP_003613352.1| Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula] gi|355514687|gb|AES96310.1| Nucleotide-binding oligomerization domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/605 (70%), Positives = 498/605 (82%), Gaps = 12/605 (1%)
Query: 3 STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRL----KRLVVKAA 58
STST+SLYSHP+ +S A A LP RR F L +R VVKA
Sbjct: 4 STSTLSLYSHPQPPQLRLRRRLQSL--AGTAIQFVILPTLNRRRPFGLGAGSRRFVVKAE 61
Query: 59 ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
RRVYR+SQ+D L+ A VKQIA+ V P GVF++ T V+WKLVEKL+ P P
Sbjct: 62 GTSARASGSRRVYRESQADATLSVASVKQIATNVAPFGVFLALTIVIWKLVEKLVAPTPK 121
Query: 119 RPSKPTAE------GMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGR 172
+ TAE G+ WS AGTNLLS K+ +SKQ LNEFA+ELR+FS DMSGR
Sbjct: 122 QSKSTTAESQSASQGLKWSFAAGTNLLSQLGAKIDSQSKQKLNEFARELRSFSYTDMSGR 181
Query: 173 NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD 232
NFGDEGLFFLAESL +NQ AEEVSFAANGITAAG+KAFDGVLQSNI LKTL+LSGNP+GD
Sbjct: 182 NFGDEGLFFLAESLAFNQNAEEVSFAANGITAAGMKAFDGVLQSNITLKTLDLSGNPVGD 241
Query: 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292
EG KCLCDIL+ N+ +E+LQL+S DL DEGAKAIAE+LK NS LRVLELNNNMI+YSGFT
Sbjct: 242 EGAKCLCDILMGNSTIEKLQLNSADLGDEGAKAIAEMLKKNSSLRVLELNNNMIEYSGFT 301
Query: 293 SLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS 352
SLA ALLEN++IR++HLNGNYGGALG NALAK LEGNKS+RELHLHGNSIGDEGIR+LM+
Sbjct: 302 SLAGALLENNSIRNIHLNGNYGGALGVNALAKALEGNKSIRELHLHGNSIGDEGIRSLMT 361
Query: 353 GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
GL+S KGKL +LDIGNNS++AKGAF+VA YIK KSLLW+N+YMNDIGDEGAEK+ADALK
Sbjct: 362 GLTSHKGKLTLLDIGNNSLTAKGAFYVAGYIKKIKSLLWLNIYMNDIGDEGAEKLADALK 421
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
+NR+ITT+D+GGNNIH+ G A+A+VLKDNSVIT+L+L+YNPIG DGAKAL+EV+KFHGN
Sbjct: 422 ENRSITTLDMGGNNIHAVGVGAVAKVLKDNSVITTLELSYNPIGPDGAKALAEVIKFHGN 481
Query: 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTS 532
+ TLKLGWCQIGA GAEF+AD L+YN TIS+LDLRANGLRDEGA CLA+S KVVNEALTS
Sbjct: 482 VKTLKLGWCQIGAKGAEFIADALKYNTTISVLDLRANGLRDEGALCLARSLKVVNEALTS 541
Query: 533 IDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKE 592
+DL FNEIRDDGAFAIAQALK+NEDVAVTSLN+ +NFLTKFGQSAL+DA+D V+EM+EKE
Sbjct: 542 LDLGFNEIRDDGAFAIAQALKSNEDVAVTSLNIGSNFLTKFGQSALSDARDHVFEMTEKE 601
Query: 593 VNIFF 597
+ IFF
Sbjct: 602 IAIFF 606
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297843864|ref|XP_002889813.1| EMB2004 [Arabidopsis lyrata subsp. lyrata] gi|297335655|gb|EFH66072.1| EMB2004 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/603 (71%), Positives = 496/603 (82%), Gaps = 10/603 (1%)
Query: 3 STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLS----FALPFSGTRRCFRLKRLVVKAA 58
STS+++L+S PK S S + + +S P R RL +KAA
Sbjct: 5 STSSLNLHSLPKASSGLSQWRSGFRYELLGSSVSRNRLLVSPVVILHRSPRLP--AIKAA 62
Query: 59 ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
+GG ++ RVY++SQ+ + A ++QIAS ++P G F TFVLWK+VEK + PK
Sbjct: 63 YNSDGGSKRSRVYKESQAASGFPNAKLQQIASSLLPLGSFAVVTFVLWKVVEKFMSPKSP 122
Query: 119 RPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
+ + K + +G+ WS+GAGTNLL GF K+ RE+KQ LNEFAKELR+F SVDMSG NF
Sbjct: 123 KTAAGENKSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMSGCNF 182
Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
GDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPIGDEG
Sbjct: 183 GDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKVLNLSGNPIGDEG 242
Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
K LC L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSGFTSL
Sbjct: 243 AKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSL 302
Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
A ALLEN+TIR+LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG RALM+GL
Sbjct: 303 AGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGL 362
Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
SS KGKLA+LD+GNNSISAKGAF+VAEYIK KSL+W+NLYMNDIGDEGAEKIADALKQN
Sbjct: 363 SSHKGKLALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADALKQN 422
Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
R+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFHGN+
Sbjct: 423 RSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVK 482
Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEALTS+D
Sbjct: 483 TLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVD 542
Query: 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKEVN 594
L FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQSALTDA+D V EM+EKEV
Sbjct: 543 LGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQSALTDARDHVLEMTEKEVE 602
Query: 595 IFF 597
IFF
Sbjct: 603 IFF 605
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18391166|ref|NP_563871.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] gi|15810395|gb|AAL07085.1| unknown protein [Arabidopsis thaliana] gi|20258921|gb|AAM14154.1| unknown protein [Arabidopsis thaliana] gi|332190466|gb|AEE28587.1| leucine-rich repeats-ribonuclease inhibitor domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/603 (71%), Positives = 495/603 (82%), Gaps = 10/603 (1%)
Query: 3 STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLS----FALPFSGTRRCFRLKRLVVKAA 58
STS+++L+S PK S S + + +S F P R RL +KAA
Sbjct: 5 STSSLNLHSLPKASSGLGQWKSGFRYELLGSSVSRNRLFVSPVVIHHRSPRLP--AIKAA 62
Query: 59 ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
+GG ++ RVY++SQ+ + A V+QIAS V+P G F TFVLWK+V K + PK
Sbjct: 63 YNSDGGSKRSRVYKESQAASGFPNAKVQQIASSVLPLGSFAVVTFVLWKVVGKFMSPKSP 122
Query: 119 RPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
+ S + +G+ WS+GAGTNLL GF K+ RE+KQ LNEFAKELR+F SVDMSG NF
Sbjct: 123 KTSAGENNSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMSGCNF 182
Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
GDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPIGDEG
Sbjct: 183 GDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKILNLSGNPIGDEG 242
Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
K LC L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSGFTSL
Sbjct: 243 AKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSL 302
Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
A ALLEN+TIR+LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG RALM+GL
Sbjct: 303 AGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGL 362
Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
SS KGK+A+LD+GNNSISAKGAF+VAEYIK KSL+W+NLYMNDIGDEGAEKIAD+LKQN
Sbjct: 363 SSHKGKVALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADSLKQN 422
Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
R+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFHGN+
Sbjct: 423 RSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVK 482
Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEALTS+D
Sbjct: 483 TLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVD 542
Query: 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKEVN 594
L FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQSALTDA+D V EM+EKEV
Sbjct: 543 LGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQSALTDARDHVLEMTEKEVE 602
Query: 595 IFF 597
IFF
Sbjct: 603 IFF 605
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498020|ref|XP_003517853.1| PREDICTED: protein NLRC3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/607 (70%), Positives = 505/607 (83%), Gaps = 11/607 (1%)
Query: 1 MGSTSTISLYSHPKLSHRAQPVLSRSFCQARDAPLSFALPFSGTRRCFRLKRLVVKAAAR 60
M TST+SLYSHP++ R Q + S +F A A + LP RR + VV+A++
Sbjct: 1 MAFTSTLSLYSHPQVRLRCQRLQSLAFTAAGVAQFA-PLPPLNCRRTCSPRSFVVRASSS 59
Query: 61 PEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPK 116
EG R + RRVYRQSQ++ L++APVKQIA+ V P F + TFV+WKLVEKLL+P
Sbjct: 60 VEGSRARAGGSRRVYRQSQANAPLSSAPVKQIANVVAPVAAFFALTFVIWKLVEKLLVPT 119
Query: 117 PSR------PSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
P + S+ ++G+ WS AGTNLLS K+ R+S+Q LNEFA+ELR+F S+DMS
Sbjct: 120 PKQLKYSTGESQSPSQGLKWSFAAGTNLLSQLGEKIERQSRQKLNEFARELRSFPSIDMS 179
Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
GRNFGDEGLFFLAESL +NQ AEEVSFAANGITAAG++AFDGVLQSNI LKTL+LSGN +
Sbjct: 180 GRNFGDEGLFFLAESLAFNQIAEEVSFAANGITAAGLRAFDGVLQSNITLKTLDLSGNLV 239
Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
GDEG KCLCDILV+N+ +E+LQL+S DL D GAKAIAE+LK NS LRVLELNNNMI+YSG
Sbjct: 240 GDEGAKCLCDILVNNSSIEKLQLNSADLGDVGAKAIAEMLKKNSSLRVLELNNNMIEYSG 299
Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
F+SLA ALLEN++IR++HLNGNYGGALGANALAK LE NKS+RELHLHGNSIGDEGI +L
Sbjct: 300 FSSLAGALLENNSIRNIHLNGNYGGALGANALAKALESNKSIRELHLHGNSIGDEGICSL 359
Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
M+GLSS KGKL +LDIGNNS++AKG+FHVAEYI+ ++LLW+NLYMNDIGDEGAEKIA A
Sbjct: 360 MTGLSSHKGKLTLLDIGNNSLTAKGSFHVAEYIRKSRNLLWLNLYMNDIGDEGAEKIAVA 419
Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
LK+NR+I+T+DLGGNNIH G +AIA+VLKDN VIT+L+L+YNPIG DGAKAL+EVLKFH
Sbjct: 420 LKENRSISTLDLGGNNIHVDGVNAIAQVLKDNLVITTLELSYNPIGPDGAKALAEVLKFH 479
Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
GNI TLKLGWCQIGA GAE +AD L+YN TISILDLRANGLRDEGA+ LA+S KVVNEAL
Sbjct: 480 GNIKTLKLGWCQIGAKGAECIADALKYNTTISILDLRANGLRDEGAQSLARSLKVVNEAL 539
Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSE 590
TS+DL FNEIRDDGAFAIAQALK+N+DVAVTSLN+A+NFLTKFGQ AL DA+D V EM+E
Sbjct: 540 TSLDLGFNEIRDDGAFAIAQALKSNDDVAVTSLNIASNFLTKFGQGALADARDHVLEMTE 599
Query: 591 KEVNIFF 597
KE+NIF
Sbjct: 600 KEINIFL 606
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|258678027|gb|ACV87735.1| chloroplast envelope protein 1 [Nicotiana benthamiana] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/616 (67%), Positives = 497/616 (80%), Gaps = 21/616 (3%)
Query: 1 MGSTSTISLYSHP---------KLSHRAQPVLSRSFCQARDAPLSFALPFSGT---RRCF 48
MGS ST+SL SH KL L+ S+ P+S +L FS + +C
Sbjct: 1 MGSASTLSLCSHSTVNFEFYRRKLGFGRDQALNSSYSSYVLLPISPSLYFSSSCSRSKCL 60
Query: 49 RLKRLVVKAAARPEGGRRQRR----VYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFV 104
+LKR++V+A++ G R+ VY++SQ+ T PV QIASFVVPAG FV +FV
Sbjct: 61 QLKRVIVRASSSSSTGSRRSSSSRRVYKESQAQPP--TLPVDQIASFVVPAGAFVVISFV 118
Query: 105 LWKLVEKLLMPKPSRPS---KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKEL 161
LWKLVEK+L PKP+R S + EG+ W + GTNLL GF K+ RESK LNEFAKEL
Sbjct: 119 LWKLVEKILQPKPARTSAEESKSTEGVKWFIAPGTNLLPGFGEKIERESKLRLNEFAKEL 178
Query: 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221
R+FS VDMSGRNFG++GL FLAESL YNQTAEEV+FAANGITA G+KAFDG+LQSNIALK
Sbjct: 179 RSFSIVDMSGRNFGNDGLIFLAESLAYNQTAEEVNFAANGITAEGLKAFDGILQSNIALK 238
Query: 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLEL 281
TLNLSGN IGDEG KCLC+IL +N+G+++LQL+S L DEGAKAI E+LK NS LRV+EL
Sbjct: 239 TLNLSGNAIGDEGAKCLCEILANNSGIQKLQLNSTGLGDEGAKAIGEMLKTNSTLRVVEL 298
Query: 282 NNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
NNN IDYSGF+ LA +LLEN +++SLHLNGNYGG LGA ALAKGLEGNKSLREL+L GNS
Sbjct: 299 NNNQIDYSGFSGLAGSLLENKSLQSLHLNGNYGGPLGAAALAKGLEGNKSLRELYLQGNS 358
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
IGDEG+RAL+SGLSSRKGKL +LD+ NNSI+A+GA+HVAEY K KSLLW+NLYMNDI D
Sbjct: 359 IGDEGVRALISGLSSRKGKLVLLDMANNSITARGAYHVAEYAKKSKSLLWLNLYMNDIKD 418
Query: 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461
EGAEKIA+ALK+NR+IT IDLGGN+IH+KG SA+A VLKDNSVITSL+L YNPIG +GAK
Sbjct: 419 EGAEKIAEALKENRSITNIDLGGNDIHAKGISALAEVLKDNSVITSLELGYNPIGPEGAK 478
Query: 462 ALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
AL+EVLKFHGN+ L LGWCQIGA GAE +ADML+YN+TIS LDLRANGLRDEGA CLA+
Sbjct: 479 ALAEVLKFHGNVKDLMLGWCQIGAKGAEAIADMLKYNSTISNLDLRANGLRDEGAICLAR 538
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
S KVVNEALT+++L FNEIRD+GAF+IAQALKANEDV +TS+NL +NFLTK GQ+ALTDA
Sbjct: 539 SLKVVNEALTTLNLGFNEIRDEGAFSIAQALKANEDVRLTSINLTSNFLTKLGQTALTDA 598
Query: 582 KDLVYEMSEKEVNIFF 597
+D V+EM+EKE+ + F
Sbjct: 599 RDHVFEMTEKELAVMF 614
|
Source: Nicotiana benthamiana Species: Nicotiana benthamiana Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452044|ref|XP_004143770.1| PREDICTED: LOW QUALITY PROTEIN: protein NLRC3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/607 (68%), Positives = 487/607 (80%), Gaps = 21/607 (3%)
Query: 3 STSTISLYSHPKLSHRAQPVLSRSF--------CQARDAPLSFALPFSGTRRCFRLKRLV 54
STSTIS SHPK+ R + S A A LS + R FRL+ LV
Sbjct: 5 STSTISFCSHPKIFLRLHSLGSPRVGFGASGLNYHANGAFLSV----THRTRGFRLRNLV 60
Query: 55 VKAAARPEGGRRQ----RRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVE 110
+KA R + G R+ RRVYR SQ+ ++ APVKQ+AS V+PAGV V TFVLWKLVE
Sbjct: 61 LKATLRSDSGSRRAATSRRVYRDSQTQSSSLVAPVKQLASTVLPAGVLVVFTFVLWKLVE 120
Query: 111 KLLMPKPSRPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMS 170
+L++ K + S ++ GAG NL K+ RE+K LN+FAKELR F SVDM+
Sbjct: 121 RLMVQKSDKSSSSVKNKWSF--GAGINLFPDLAAKVDREAKLKLNDFAKELRTFRSVDMT 178
Query: 171 GRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230
RNFGDEGLFFLAESLGYNQT EEV+F+ANGITA GIKAFDGVLQSNI LKTL+LSGNPI
Sbjct: 179 ARNFGDEGLFFLAESLGYNQTVEEVNFSANGITAEGIKAFDGVLQSNIILKTLDLSGNPI 238
Query: 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG 290
GD+GVK LCD+LV+N+ +E L+L+S D+ DEGAKA++E+LKNNS LR++ELNNNMIDYSG
Sbjct: 239 GDDGVKTLCDLLVNNSSIETLRLNSTDVGDEGAKAVSEMLKNNSSLRIIELNNNMIDYSG 298
Query: 291 FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350
FTSL LEN+TIR++HL GNYGGALGANALAKGLEGNKSLRELHL+GNSIGDEG+R L
Sbjct: 299 FTSLX---LENNTIRNIHLTGNYGGALGANALAKGLEGNKSLRELHLNGNSIGDEGVRTL 355
Query: 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410
+SGLSSRKGKLA+LDIGNNSI+AKGAFHVAE++K KSL+ +NLYMNDIGDEGAEKIAD+
Sbjct: 356 ISGLSSRKGKLALLDIGNNSITAKGAFHVAEFVKRTKSLVLLNLYMNDIGDEGAEKIADS 415
Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH 470
LKQNRTI T+DLGGNNIH +G S +A+ LKDN IT+L+++YNPIG +GA+ALSEVLKFH
Sbjct: 416 LKQNRTIKTLDLGGNNIHGEGISKVAQALKDNDTITTLEISYNPIGPEGAEALSEVLKFH 475
Query: 471 GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
GN+ LKLGWC+IG GAEF+A+ L+YN TIS+LDLR NGLRDEGA CLA+S KVVNEAL
Sbjct: 476 GNVKNLKLGWCKIGPKGAEFIAETLKYNTTISVLDLRGNGLRDEGATCLARSLKVVNEAL 535
Query: 531 TSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSE 590
TS+DL FNEIRD GAFAIAQALKAN D+AVTSLNLANNFLTKFGQSALTDA+D V+EM E
Sbjct: 536 TSLDLGFNEIRDPGAFAIAQALKANGDIAVTSLNLANNFLTKFGQSALTDARDHVHEMCE 595
Query: 591 KEVNIFF 597
+EV I +
Sbjct: 596 REVCISY 602
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 597 | ||||||
| TAIR|locus:2194604 | 605 | emb2004 "embryo defective 2004 | 0.993 | 0.980 | 0.668 | 1.4e-204 | |
| UNIPROTKB|Q7RTR2 | 1065 | NLRC3 "Protein NLRC3" [Homo sa | 0.716 | 0.401 | 0.339 | 4.7e-52 | |
| MGI|MGI:2444070 | 1064 | Nlrc3 "NLR family, CARD domain | 0.705 | 0.395 | 0.319 | 1.9e-46 | |
| RGD|2321956 | 456 | LOC100360501 "ribonuclease inh | 0.623 | 0.815 | 0.269 | 2.2e-28 | |
| RGD|621398 | 456 | Rnh1 "ribonuclease/angiogenin | 0.634 | 0.831 | 0.264 | 3.6e-28 | |
| MGI|MGI:1195456 | 456 | Rnh1 "ribonuclease/angiogenin | 0.604 | 0.791 | 0.266 | 1e-26 | |
| UNIPROTKB|P10775 | 456 | RNH1 "Ribonuclease inhibitor" | 0.644 | 0.844 | 0.263 | 1e-26 | |
| UNIPROTKB|P13489 | 461 | RNH1 "Ribonuclease inhibitor" | 0.664 | 0.861 | 0.258 | 7.5e-26 | |
| RGD|1562269 | 953 | Nod1 "nucleotide-binding oligo | 0.376 | 0.236 | 0.330 | 1.4e-24 | |
| ZFIN|ZDB-GENE-110913-19 | 1252 | si:dkey-156k2.3 "si:dkey-156k2 | 0.649 | 0.309 | 0.257 | 3.7e-24 |
| TAIR|locus:2194604 emb2004 "embryo defective 2004" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1979 (701.7 bits), Expect = 1.4e-204, P = 1.4e-204
Identities = 403/603 (66%), Positives = 464/603 (76%)
Query: 3 STSTISLYSHPKLSHRAQPVLSRSFCQARDAPLS----FALPFSGTRRCFRLKRLVVKAA 58
STS+++L+S PK S S + + +S F P R RL +KAA
Sbjct: 5 STSSLNLHSLPKASSGLGQWKSGFRYELLGSSVSRNRLFVSPVVIHHRSPRLP--AIKAA 62
Query: 59 ARPEGGXXXXXXXXXXXXDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
+GG + A V+QIAS V+P G F TFVLWK+V K + PK
Sbjct: 63 YNSDGGSKRSRVYKESQAASGFPNAKVQQIASSVLPLGSFAVVTFVLWKVVGKFMSPKSP 122
Query: 119 RPS----KPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNF 174
+ S + +G+ WS+GAGTNLL GF K+ RE+KQ LNEFAKELR+F SVDMSG NF
Sbjct: 123 KTSAGENNSSTQGVKWSIGAGTNLLQGFAAKVDREAKQRLNEFAKELRSFRSVDMSGCNF 182
Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEG 234
GDEGLFFLAESLGYNQT EEVSF+ANGITAAG+KAFDGVLQSNI LK LNLSGNPIGDEG
Sbjct: 183 GDEGLFFLAESLGYNQTVEEVSFSANGITAAGVKAFDGVLQSNIMLKILNLSGNPIGDEG 242
Query: 235 VKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
K LC L++N+ +E LQL+S D+ DEGAK IAELLK NS LR++ELNNNMIDYSGFTSL
Sbjct: 243 AKTLCATLMENSSIEILQLNSTDIGDEGAKEIAELLKRNSTLRIIELNNNMIDYSGFTSL 302
Query: 295 AEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGL 354
A ALLEN+TIR+LH KSLRELHLHGNSIGDEG RALM+GL
Sbjct: 303 AGALLENNTIRNLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGTRALMAGL 362
Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
SS KGK+A+LD+GNNSISAKGAF+VAEYIK KSL+W+NLYMNDIGDEGAEKIAD+LKQN
Sbjct: 363 SSHKGKVALLDLGNNSISAKGAFYVAEYIKRSKSLVWLNLYMNDIGDEGAEKIADSLKQN 422
Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
R+I TIDLGGNNIH++G +AIA+ LKDN++IT+L++ YNPIG DGAKALSE+LKFHGN+
Sbjct: 423 RSIATIDLGGNNIHAEGVNAIAQALKDNAIITTLEVGYNPIGPDGAKALSEILKFHGNVK 482
Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
TLKLGWCQI A GAE VADMLRYNNTIS+LDLRANGLRDEGA CLA+S KVVNEALTS+D
Sbjct: 483 TLKLGWCQIAAKGAEHVADMLRYNNTISVLDLRANGLRDEGASCLARSLKVVNEALTSVD 542
Query: 535 LAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKEVN 594
L FNEIRDDGAFAIAQALKANEDV VTS+NL NNF+TKFGQSALTDA+D V EM+EKEV
Sbjct: 543 LGFNEIRDDGAFAIAQALKANEDVTVTSINLGNNFITKFGQSALTDARDHVLEMTEKEVE 602
Query: 595 IFF 597
IFF
Sbjct: 603 IFF 605
|
|
| UNIPROTKB|Q7RTR2 NLRC3 "Protein NLRC3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.7e-52, P = 4.7e-52
Identities = 147/433 (33%), Positives = 220/433 (50%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
S+ L +L + + F D + L L G + +++S A N I+ G K
Sbjct: 625 SQGVLQSLLPQLLYCRKLRLDTNQFQDPVMELLGSVLSGKDCRIQKISLAENQISNKGAK 684
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
A L N +L +L+L GN IG +G K L D L N + L L +RD+GA+++AE
Sbjct: 685 ALARSLLVNRSLTSLDLRGNSIGPQGAKALADALKINRTLTSLSLQGNTVRDDGARSMAE 744
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXX 328
L +N L +L L N I G +A+AL +N +++ L
Sbjct: 745 ALASNRTLSMLHLQKNSIGPMGAQRMADALKQNRSLKELMFSSNSIGDGGAKALAEALKV 804
Query: 329 XKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
+ L L L NSI D G+ ALM L + + L+ L + NSIS +GA +A + +
Sbjct: 805 NQGLESLDLQSNSISDAGVAALMGALCTNQTLLS-LSLRENSISPEGAQAIAHALCANST 863
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L ++L N + D+GA IA A+++NRT+T++ L N I + A A+ + L+ N +TSL
Sbjct: 864 LKNLDLTANLLHDQGARAIAVAVRENRTLTSLHLQWNFIQAGAAQALGQALQLNRSLTSL 923
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
DL N IG DGA A++ LK + + L L IGASGA+ + + L N T+ ILDLR
Sbjct: 924 DLQENAIGDDGACAVARALKVNTALTALYLQVASIGASGAQVLGEALAVNRTLEILDLRG 983
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
N + GAK LA + KV N +L ++L N + DGA IA AL N + +NL N
Sbjct: 984 NAIGVAGAKALANALKV-NSSLRRLNLQENSLGMDGAICIATALSGNH--RLQHINLQGN 1040
Query: 569 FLTKFGQSALTDA 581
+ G +++A
Sbjct: 1041 HIGDSGARMISEA 1053
|
|
| MGI|MGI:2444070 Nlrc3 "NLR family, CARD domain containing 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 497 (180.0 bits), Expect = 1.9e-46, P = 1.9e-46
Identities = 137/429 (31%), Positives = 212/429 (49%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIK 208
S+ L +L S+ + F D + L L G + ++S A N I G K
Sbjct: 624 SQHVLQSLLPQLLYCQSLRLDNNQFQDPVMELLGSVLSGKDCRIRKISLAENQIGNKGAK 683
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
A L N +L TL+L N IG G K L D L N + L L S ++D+G +AE
Sbjct: 684 ALARSLLVNRSLITLDLRSNSIGPPGAKALADALKINRTLTSLSLQSNVIKDDGVMCVAE 743
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHXXXXXXXXXXXXXXXXXXXX 328
L +N + +L+L N+I G +A+AL +N ++++L
Sbjct: 744 ALVSNQTISMLQLQKNLIGLIGAQQMADALKQNRSLKALMFSSNTIGDRGAIALAEALKV 803
Query: 329 XKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
+ L L L NSI D G+ LM L S + L+ L++ NSIS +GA + + + +
Sbjct: 804 NQILENLDLQSNSISDMGVTVLMRALCSNQ-TLSSLNLRENSISPEGAQALTQALCRNNT 862
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L ++L N + D GA+ IA A+ +N ++T + L N I + A A+ + L+ N +T+L
Sbjct: 863 LKHLDLTANLLHDRGAQAIAVAVGENHSLTHLHLQWNFIQAGAARALGQALQLNRTLTTL 922
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
DL N IG +GA +++ LK + + L L IG+ GA+ + + L N T+ ILDLR
Sbjct: 923 DLQENAIGDEGASSVAGALKVNTTLIALYLQVASIGSQGAQALGEALTVNRTLEILDLRG 982
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
N + GAK LA + K+ N +L ++L N + DGA +A AL N + +NL N
Sbjct: 983 NDVGAAGAKALANALKL-NSSLRRLNLQENSLGMDGAIFVASALSENH--GLHHINLQGN 1039
Query: 569 FLTKFGQSA 577
G+SA
Sbjct: 1040 ---PIGESA 1045
|
|
| RGD|2321956 LOC100360501 "ribonuclease inhibitor-like" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.2e-28, P = 2.2e-28
Identities = 102/379 (26%), Positives = 180/379 (47%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S +T AG VL+S L
Sbjct: 52 ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GDEG+K LC+ L D +E+LQL +L + +A +L+ + L
Sbjct: 111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
L+NN +G +L + L +++ + SL SL+EL L
Sbjct: 171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL SGL +L L + + ++A+G + ++ +SL ++L N+
Sbjct: 231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290
Query: 399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA+ + ++L + + ++ + ++ + VL N + L ++ NP+G
Sbjct: 291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
G L + L + + L LG C + SG +A +L N ++ LDL N + D G
Sbjct: 351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDTGV 410
Query: 517 KCLAQSFKVVNEALTSIDL 535
L +S K + AL + L
Sbjct: 411 LQLLESLKQPSCALQQLVL 429
|
|
| RGD|621398 Rnh1 "ribonuclease/angiogenin inhibitor 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 3.6e-28, P = 3.6e-28
Identities = 103/390 (26%), Positives = 185/390 (47%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S +T AG VL+S L
Sbjct: 52 ALTELSLRTNELGDAGVGLVLQGL-QNPTCKIQKLSLQNCSLTEAGCGVLPDVLRSLSTL 110
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GDEG+K LC+ L D +E+LQL +L + +A +L+ + L
Sbjct: 111 RELHLNDNPLGDEGLKLLCEGLRDPQCRLEKLQLEYCNLTATSCEPLASVLRVKPDFKEL 170
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
L+NN +G +L + L +++ + SL SL+EL L
Sbjct: 171 VLSNNDFHEAGIHTLCQGLKDSACQLESLKLENCGITSANCKDLCDVVASKASLQELDLG 230
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL SGL +L L + + ++A+G + ++ +SL ++L N+
Sbjct: 231 SNKLGNTGIAALCSGLLLPSCRLRTLWLWDCDVTAEGCKDLCRVLRAKQSLKELSLAGNE 290
Query: 399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA+ + ++L + + ++ + ++ + VL N + L ++ NP+G
Sbjct: 291 LKDEGAQLLCESLLEPGCQLESLWVKTCSLTAASCPHFCSVLTKNRSLFELQMSSNPLGD 350
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
G L + L + + L LG C + SG +A +L N ++ LDL N + D G
Sbjct: 351 SGVVELCKALGYPDTVLRVLWLGDCDVTDSGCSSLATVLLANRSLRELDLSNNCMGDNGV 410
Query: 517 KCLAQSFK---VVNEALTSIDLAF-NEIRD 542
L +S K + + L D+ + +E+ D
Sbjct: 411 LQLLESLKQPSCILQQLVLYDIYWTDEVED 440
|
|
| MGI|MGI:1195456 Rnh1 "ribonuclease/angiogenin inhibitor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 98/368 (26%), Positives = 174/368 (47%)
Query: 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITAAGIKAFDGVLQSNIAL 220
A + + + GD G+ + + L N T +++S G+T AG G+L+S L
Sbjct: 52 ALTELSLRTNELGDGGVGLVLQGL-QNPTCKIQKLSLQNCGLTEAGCGILPGMLRSLSTL 110
Query: 221 KTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L+L+ NP+GD G+K LC+ L D +E+LQL +L + +A +L+ + + L
Sbjct: 111 RELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKEL 170
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLH 338
L+NN + G L + L +++ + SL SL+EL L
Sbjct: 171 VLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQELDLS 230
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N +G+ GI AL GL KL L + I+A+G + ++ +SL ++L N+
Sbjct: 231 SNKLGNAGIAALCPGLLLPSCKLRTLWLWECDITAEGCKDLCRVLRAKQSLKELSLASNE 290
Query: 399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ DEGA + ++L + + ++ + ++ + VL + + L ++ NP+G
Sbjct: 291 LKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGD 350
Query: 458 DGAKALSEVLKFHGNI-NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA 516
+G + L + L + L LG C + SG +A++L N ++ LDL N + G
Sbjct: 351 EGVQELCKALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRELDLSNNCMGGPGV 410
Query: 517 KCLAQSFK 524
L +S K
Sbjct: 411 LQLLESLK 418
|
|
| UNIPROTKB|P10775 RNH1 "Ribonuclease inhibitor" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 104/395 (26%), Positives = 182/395 (46%)
Query: 150 SKQTLNEFAKELRAFSSVD---MSGRNFGDEGLFFLAESLGYNQTA--EEVSFAANGITA 204
+++ + LRA S+ + GD G+ + + L + T +++S +T
Sbjct: 36 TEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGL-QSPTCKIQKLSLQNCSLTE 94
Query: 205 AGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGA 263
AG L+S L+ L+LS NP+GD G++ LC+ L+D +E+LQL L
Sbjct: 95 AGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASC 154
Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHXXXXXXXXXXXXXX 322
+ +A +L+ L+ L ++NN I +G L + L +++ + +L
Sbjct: 155 EPLASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDL 214
Query: 323 XXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
SLREL L N +GD GI L GL S +L L + I+A G +
Sbjct: 215 CGIVASQASLRELDLGSNGLGDAGIAELCPGLLSPASRLKTLWLWECDITASGCRDLCRV 274
Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD 441
++ ++L ++L N +GDEGA + ++L Q + ++ + ++ + ++ +L
Sbjct: 275 LQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAACCQHVSLMLTQ 334
Query: 442 NSVITSLDLAYNPIGADGAKALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNT 500
N + L L+ N +G G + L + L G + L LG C++ SG +A +L N +
Sbjct: 335 NKHLLELQLSSNKLGDSGIQELCQALSQPGTTLRVLCLGDCEVTNSGCSSLASLLLANRS 394
Query: 501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
+ LDL N + D G L S + AL + L
Sbjct: 395 LRELDLSNNCVGDPGVLQLLGSLEQPGCALEQLVL 429
|
|
| UNIPROTKB|P13489 RNH1 "Ribonuclease inhibitor" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 7.5e-26, P = 7.5e-26
Identities = 104/403 (25%), Positives = 171/403 (42%)
Query: 183 AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242
AE L Q + V G+T A K L+ N AL LNL N +GD GV C+ L
Sbjct: 21 AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80
Query: 243 -VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE- 300
+ +++L L + L G ++ L+ L+ L L++N++ +G L E LL+
Sbjct: 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140
Query: 301 NSTIRSLHXXXXXXXXXXXXXXXXXXXXXKSLRELHLHGNSIGDEGIRALMSGLSSRKGK 360
+ L +EL + N I + G+R L GL +
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200
Query: 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG-AEKIADALKQNRTITT 419
L L + + +++ + + + SL + L N +GD G AE L + + T
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260
Query: 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG-NINTLKL 478
+ + I +KG + RVL+ + L LA N +G +GA+ L E L G + +L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320
Query: 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538
C A+ + +L N + L + N L D G + L Q L + LA
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380
Query: 539 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
++ D ++A L AN ++ L+L+NN L G L ++
Sbjct: 381 DVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAGILQLVES 421
|
|
| RGD|1562269 Nod1 "nucleotide-binding oligomerization domain containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 76/230 (33%), Positives = 123/230 (53%)
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
L L N++ D G+R L S +L V+ + N I+ G + E + K + ++ L
Sbjct: 708 LDLDNNNLNDYGVRELQPCFS----RLTVIRLSVNQITDMGVKVLCEELTKYKIVTFLGL 763
Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
Y N I D GA +A L + R +T + LG N I S+G +A+ +K+++ I + + N
Sbjct: 764 YNNQITDIGARYVAQILDECRGLTHLKLGKNRITSEGGRCVAQAVKNSTSIVEVGMWGNQ 823
Query: 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514
IG +GAKA +E L+ H ++ TL L + I G + +A L+ N T++I+ L N L DE
Sbjct: 824 IGDEGAKAFAEALRDHPSLTTLSLAFNGISPEGGKSLAQALKQNTTLTIIWLTKNELNDE 883
Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
A+C A+ +V N+ L + L N I +G +A+AL+ N + LN
Sbjct: 884 AAECFAEMLRV-NQTLKHLWLIQNHITAEGTAQLARALQKNTTITEICLN 932
|
|
| ZFIN|ZDB-GENE-110913-19 si:dkey-156k2.3 "si:dkey-156k2.3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 310 (114.2 bits), Expect = 3.7e-24, P = 3.7e-24
Identities = 103/400 (25%), Positives = 187/400 (46%)
Query: 202 ITAAGIKAFDGVLQS-NIALKTLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLR 259
+T ++ LQS N L+ L+LS N + D GVK L D L + +E L+L L
Sbjct: 699 LTTQSCESLSSALQSSNCVLRELDLSNNDLQDSGVKLLSDGLKSPDCKLETLRLVMCKLT 758
Query: 260 DEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHXXXXXXXXX 317
++++ L++ N +LR L+L+NN + SG L++ L N + +L
Sbjct: 759 VRSCESLSSALQSSNCVLRELDLSNNDLQDSGVKLLSDGLKSPNCKLETLRFVLCNITAD 818
Query: 318 XXXXXXXXXXXXKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376
LREL L N + D G++ L GL S KL L + +++ +
Sbjct: 819 SCESLSSALQSSNCVLRELDLSNNGLQDSGVKLLSDGLKSPDFKLETLSLQGCNLTTQSF 878
Query: 377 FHVAEYIKNCKSLLW-INLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASA 434
++ +++ +L ++L ND+ + ++D LK N + T+ L + + +
Sbjct: 879 ESLSSALQSSNCVLRELDLSNNDLQHSAVKLLSDGLKSPNCKLETLRLQWCKLTVQSCES 938
Query: 435 IARVLKD-NSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVA 492
++ L+ N V+ LDL+ N + G K S+ LK + + TL+L C + E ++
Sbjct: 939 LSSALQSSNCVLRELDLSNNDLQDSGVKLHSDGLKTVNSKLETLRLAMCNLTVQCCESLS 998
Query: 493 DMLRYNN-TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
L+ +N + LDL N L+D G K L+ K +N L ++ L+ + ++G ++ A
Sbjct: 999 SALQSSNYVLRELDLSNNDLQDSGVKKLSDGLKSLNCKLETLRLSGCMVTEEGCGFLSSA 1058
Query: 552 LKANEDVAVTSLNLANNFLTKFGQSALTDA-KDLVYEMSE 590
L +N + L+L+ N G L++ +D Y + +
Sbjct: 1059 LTSNPS-HLRELDLSYNHPGDSGVKLLSEKLEDANYTLDK 1097
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 597 | |||
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-37 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 2e-35 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-30 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 1e-27 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 4e-08 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 3e-07 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 9e-06 | |
| COG5238 | 388 | COG5238, RNA1, Ran GTPase-activating protein (RanG | 2e-04 | |
| smart00368 | 28 | smart00368, LRR_RI, Leucine rich repeat, ribonucle | 4e-04 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 85/291 (29%), Positives = 133/291 (45%), Gaps = 32/291 (10%)
Query: 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAA---------------- 199
E +L + + G G+E LA +L + +E+ +
Sbjct: 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQG 76
Query: 200 --------------NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 245
N + G + +L+S+ +L+ L L+ N +GD G++ L L D
Sbjct: 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSS-SLQELKLNNNGLGDRGLRLLAKGLKDL 135
Query: 246 A-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI 304
+E+L L L +A+A+ L+ N L+ L L NN I +G +LAE L N +
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195
Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
L LN N GA+ALA+ L KSL L+L N++ D G AL S L S L L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255
Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR 415
+ N I+ GA +AE + +SLL ++L N G+EGA+ +A++L +
Sbjct: 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 100/296 (33%), Positives = 148/296 (50%), Gaps = 7/296 (2%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVER 250
+ + N + KA L+ +LK L LS N G G++ L L G++
Sbjct: 26 QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85
Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHL 309
L LS L +G + LL+++S L+ L+LNNN + G LA+ L + + L L
Sbjct: 86 LDLSDNALGPDGCGVLESLLRSSS-LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
N ALAK L N+ L+EL+L N IGD GIRAL GL + L VLD+ NN
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-NLEVLDLNNN 203
Query: 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIH 428
++ +GA +AE + + KSL +NL N++ D GA +A AL N ++ T+ L N+I
Sbjct: 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263
Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQI 483
GA +A VL + + LDL N G +GA+ L+E L + +L +
Sbjct: 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 93/280 (33%), Positives = 141/280 (50%), Gaps = 8/280 (2%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENSTI 304
++ L+L L +E AKA+A L+ L+ L L+ N I G SL + L + +
Sbjct: 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR-GLQSLLQGLTKGCGL 83
Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
+ L L+ N G G L + L + SL+EL L+ N +GD G+R L GL L L
Sbjct: 84 QELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142
Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424
+G N + +A+ ++ + L +NL N IGD G +A+ LK N + +DL
Sbjct: 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202
Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN--TLKLGWCQ 482
N + +GASA+A L + L+L N + GA AL+ L NI+ TL L
Sbjct: 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL-SPNISLLTLSLSCND 261
Query: 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522
I GA+ +A++L ++ LDLR N +EGA+ LA+S
Sbjct: 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 89/273 (32%), Positives = 133/273 (48%), Gaps = 7/273 (2%)
Query: 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG--DEGIRALMSGLSSRKGKLAV 363
L L GN G A ALA L SL+EL L N G G+++L+ GL+ L
Sbjct: 27 VLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQE 85
Query: 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR-TITTIDL 422
LD+ +N++ G V E + SL + L N +GD G +A LK + + L
Sbjct: 86 LDLSDNALGPDGC-GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144
Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482
G N + A+A+ L+ N + L+LA N IG G +AL+E LK + N+ L L
Sbjct: 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG 204
Query: 483 IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542
+ GA +A+ L ++ +L+L N L D GA LA + N +L ++ L+ N+I D
Sbjct: 205 LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD 264
Query: 543 DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQ 575
DGA +A+ L E + L+L N + G
Sbjct: 265 DGAKDLAEVLAEKES--LLELDLRGNKFGEEGA 295
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 4e-08
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 25/219 (11%)
Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
LE L E+ L GN+IG E + L + +++ + L + N S A E N
Sbjct: 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRN----LRVVNFS-DAFTGRDKDELYSN 80
Query: 386 CKSLL----------WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435
LL ++L N G E E++ D + + + + L N + I
Sbjct: 81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI 140
Query: 436 ARVL---------KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486
+ L D + + N + + + +L+ H N+ +K+ I
Sbjct: 141 GKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPE 200
Query: 487 GAEFVADM-LRYNNTISILDLRANGLRDEGAKCLAQSFK 524
G +A + L Y++++ +LDL+ N EG++ LA +
Sbjct: 201 GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239
|
Length = 388 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 63/303 (20%), Positives = 115/303 (37%), Gaps = 29/303 (9%)
Query: 203 TAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV---DLR 259
T +K L+ L ++LSGN IG E ++ LC+++ + + + S +
Sbjct: 15 TKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDK 74
Query: 260 DEGAKAIAELLK---NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
DE + LLK L+ ++L++N L + + ++ + L LN N G
Sbjct: 75 DELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134
Query: 317 LGANALAKGLEG---NKS------LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
+ + K L NK L + N + + + L S + L + I
Sbjct: 135 IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN-LKEVKIQ 193
Query: 368 NNSISAKGAFHVAEY-IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
N I +G +A + SL ++L N EG+ +ADAL + + + L
Sbjct: 194 QNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253
Query: 427 IHSKGASAIARVL--KDNSVITSLDLAYNPIGADGAK----------ALSEVLKFHGNIN 474
+ ++G ++ R K + L YN A+ ++ N N
Sbjct: 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313
Query: 475 TLK 477
+K
Sbjct: 314 RIK 316
|
Length = 388 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 9e-06
Identities = 52/268 (19%), Positives = 98/268 (36%), Gaps = 47/268 (17%)
Query: 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDG------V 213
+ VD+SG G E + L + + V+F+ + +
Sbjct: 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKA 87
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL--- 270
L L+ ++LS N G E + L D++ + + L+L++ L I + L
Sbjct: 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL 147
Query: 271 ------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
+ L V+ N LEN + A
Sbjct: 148 AYNKKAADKPKLEVVICGRNR-------------LENGS---------------KELSAA 179
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
LE +++L+E+ + N I EG+ L L VLD+ +N+ + +G+ ++A+ +
Sbjct: 180 LLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC 239
Query: 385 NCKSLLWINLYMND--IGDEGAEKIADA 410
L + L ND + +EG + +
Sbjct: 240 EWNLLRELRL--NDCLLSNEGVKSVLRR 265
|
Length = 388 |
| >gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 38/232 (16%)
Query: 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433
KG E + ++L N IG E E++ + + R + ++ +
Sbjct: 20 KGVVEELEMMDELVE---VDLSGNTIGTEAMEELCNVIANVRNLRVVNF---------SD 67
Query: 434 AIARVLKDNSV---------------ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478
A KD + +DL+ N G++ + L +++ ++ LKL
Sbjct: 68 AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKL 127
Query: 479 GWCQIGASGAEFVADMLR---YNNTIS------ILDLRANGLRDEGAKCLAQSFKVVNEA 529
+G + L YN + ++ N L + + A + +E
Sbjct: 128 NNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES-HEN 186
Query: 530 LTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
L + + N IR +G +A L ++ L+L +N T G L DA
Sbjct: 187 LKEVKIQQNGIRPEGVTMLAF-LGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237
|
Length = 388 |
| >gnl|CDD|197686 smart00368, LRR_RI, Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSS 356
N SLREL L N +GDEG RAL L
Sbjct: 1 NPSLRELDLSNNKLGDEGARALAEALKD 28
|
Length = 28 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.97 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.97 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.97 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.95 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.95 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.95 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.95 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.93 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.91 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.88 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 99.86 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.8 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 99.8 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.76 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.75 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.75 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 99.71 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.66 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.66 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.65 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.65 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.61 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.59 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.58 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.57 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.55 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.5 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.49 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.39 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.38 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.32 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.22 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.12 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.98 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.92 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.91 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.91 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.75 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.65 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.61 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.61 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.61 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.6 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.49 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.38 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.33 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.3 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.25 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.0 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.9 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.86 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.82 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.81 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.79 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.74 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 97.69 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 97.54 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.5 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.48 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.41 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.36 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.25 | |
| KOG3735 | 353 | consensus Tropomodulin and leiomodulin [Cytoskelet | 97.03 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.02 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.93 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.38 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 96.3 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.24 | |
| KOG3735 | 353 | consensus Tropomodulin and leiomodulin [Cytoskelet | 96.08 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 95.99 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.93 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.85 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 95.69 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.64 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 93.65 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 92.32 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 86.51 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.47 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 84.83 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 81.04 |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=246.00 Aligned_cols=315 Identities=31% Similarity=0.400 Sum_probs=216.6
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCC--hhhHHHHHHHHh
Q 007577 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID--YSGFTSLAEALL 299 (597)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~--~~~~~~l~~~l~ 299 (597)
.|+|.++.+++..+..+... ..+|++|++++|.+++.+...++..+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 45666666664444333332 3557777777777777777777777777777777777777766 455666666666
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|+.|++++|.+.......+...... ++|++|++++|.+++.+...+...+....++|+.|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 67777777777777665444444333333 56888888888777666666665554433577888888887776666666
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHH
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (597)
...+..+++|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+..+++|++|++++|.+++.+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence 67777777788888888888777777777777777788888888888877777777777777777888888888777766
Q ss_pred HHHHHHHHh-hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 460 AKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 460 ~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+..+...+. ..+.|++|++++|.+++.+...+...+..+++|+.+++++|.+++.+...++..+....+.|++||+.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 666655433 2457777777777777666666666666667777777777777777777776666543356777777666
Q ss_pred CC
Q 007577 539 EI 540 (597)
Q Consensus 539 ~i 540 (597)
.+
T Consensus 318 ~~ 319 (319)
T cd00116 318 SF 319 (319)
T ss_pred CC
Confidence 53
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=241.49 Aligned_cols=311 Identities=33% Similarity=0.441 Sum_probs=197.7
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC--hhHHHHHHHHHh
Q 007577 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILV 243 (597)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~ 243 (597)
.|+|..+.+.+..+..+... ..+|++|++++|.+++.+...+...+...++|++|+++++.+. ..++..++..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~---l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~ 78 (319)
T cd00116 2 QLSLKGELLKTERATELLPK---LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLT 78 (319)
T ss_pred ccccccCcccccchHHHHHH---HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHH
Confidence 46677777765554444433 3458888888888888777777777777778888888887776 456666667777
Q ss_pred cCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhC-CCccEEEcCCCCCChHHHHHH
Q 007577 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l 322 (597)
.+++|++|++++|.+.......+...... ++|++|++++|++++.+...+...+..+ ++|++|++++|.++..+...+
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 77788888888888776555555555444 5688888888887777666666666666 677777777777765555555
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcH
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (597)
...+..++.|++|++++|.+++.++..+...+... ++|+.|++++|.+++.+...+...+..+++|++|++++|.+++.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 55666666677777777766665555554444322 35666666666666555555555555566666666666666655
Q ss_pred HHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEecCC
Q 007577 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKLGW 480 (597)
Q Consensus 403 ~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~ 480 (597)
++..+...+.. .+.|++|++++|.+++.+...+...+..+++|+++++++|.+++++...+...+... +.|++|++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 55555444322 345566666666555555555555555555555555555555555555555554444 4555555544
Q ss_pred C
Q 007577 481 C 481 (597)
Q Consensus 481 n 481 (597)
+
T Consensus 317 ~ 317 (319)
T cd00116 317 D 317 (319)
T ss_pred C
Confidence 4
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-32 Score=271.40 Aligned_cols=399 Identities=18% Similarity=0.155 Sum_probs=301.0
Q ss_pred CCCccccccCcccccccchhhhHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHH
Q 007577 126 EGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA 205 (597)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~ 205 (597)
++..|.|.. .+++|.+..+...+...+..++ .+..+.||+++|.+.+.++ ..|..+++|+++++..|.++
T Consensus 46 cpa~c~c~~--~lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~----~~f~nl~nLq~v~l~~N~Lt-- 115 (873)
T KOG4194|consen 46 CPATCPCNT--RLLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDF----EFFYNLPNLQEVNLNKNELT-- 115 (873)
T ss_pred CCCcCCCCc--eeeecCccccccccccccCCcC--ccceeeeeccccccccCcH----HHHhcCCcceeeeeccchhh--
Confidence 455666653 3466666666665555444442 3456789999999988764 34567799999999999876
Q ss_pred HHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 206 GIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 206 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
.++.......+|+.|+|.+|.|.......+... +.|+.|||+.|.|+......++.. .++++|+|++|+
T Consensus 116 ---~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l----~alrslDLSrN~is~i~~~sfp~~----~ni~~L~La~N~ 184 (873)
T KOG4194|consen 116 ---RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL----PALRSLDLSRNLISEIPKPSFPAK----VNIKKLNLASNR 184 (873)
T ss_pred ---hcccccccccceeEEeeeccccccccHHHHHhH----hhhhhhhhhhchhhcccCCCCCCC----CCceEEeecccc
Confidence 345554555679999999999988866666554 899999999999887644444443 689999999999
Q ss_pred CChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee
Q 007577 286 IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 286 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
|++-+.. .|..+.+|..|.|+.|.++..+. ..|.+++.|+.|+|..|.|.....-.+ ..+++|+.|.
T Consensus 185 It~l~~~----~F~~lnsL~tlkLsrNrittLp~----r~Fk~L~~L~~LdLnrN~irive~ltF-----qgL~Sl~nlk 251 (873)
T KOG4194|consen 185 ITTLETG----HFDSLNSLLTLKLSRNRITTLPQ----RSFKRLPKLESLDLNRNRIRIVEGLTF-----QGLPSLQNLK 251 (873)
T ss_pred ccccccc----cccccchheeeecccCcccccCH----HHhhhcchhhhhhccccceeeehhhhh-----cCchhhhhhh
Confidence 9875533 34456799999999999998877 557789999999999998865322222 4566899999
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
|..|+|..- -...|..+.++++|+|+.|++.... ..++..++.|+.|+|+.|.|....+..+.- |++|
T Consensus 252 lqrN~I~kL----~DG~Fy~l~kme~l~L~~N~l~~vn----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf----tqkL 319 (873)
T KOG4194|consen 252 LQRNDISKL----DDGAFYGLEKMEHLNLETNRLQAVN----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSF----TQKL 319 (873)
T ss_pred hhhcCcccc----cCcceeeecccceeecccchhhhhh----cccccccchhhhhccchhhhheeecchhhh----cccc
Confidence 999988762 1235678899999999999987642 234556899999999999887766555543 5999
Q ss_pred CEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh---HHHHHHHHH
Q 007577 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD---EGAKCLAQS 522 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~---~~~~~l~~~ 522 (597)
++|+|++|.|+......+... ..|++|+|+.|.|+......+.. .++|++|||++|.|.- ++...+..+
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af~~----lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAFVG----LSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred eeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHHHH----hhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 999999999887655555444 79999999999997665444443 4899999999996642 234444443
Q ss_pred HhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhhhh
Q 007577 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMS 589 (597)
Q Consensus 523 l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~l~ 589 (597)
+.|+.|++.+|++.....+++... ..|++|||.+|.|..+-..+|..+.-....|+
T Consensus 392 -----~~LrkL~l~gNqlk~I~krAfsgl------~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 392 -----PSLRKLRLTGNQLKSIPKRAFSGL------EALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred -----hhhhheeecCceeeecchhhhccC------cccceecCCCCcceeecccccccchhhhhhhc
Confidence 779999999999998877777665 34999999999999999999998833333333
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-29 Score=290.69 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=179.1
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|+|++|.+... ++..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+...
T Consensus 159 ~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~--- 227 (968)
T PLN00113 159 DIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPRELGQMKSLKWIYLGYNNLSGE--- 227 (968)
T ss_pred HHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CChHHcCcCCccEEECcCCccCCc---
Confidence 345667777777777765432 344555667777777777765432 233344556677777766666543
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
++..+..+++|++|++++|.++.. ++..+.++++|++|++++|.+.+ .++..+..+++|++|++++|.+..
T Consensus 228 -~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 228 -IPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSG----PIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred -CChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeec----cCchhHhhccCcCEEECcCCeecc
Confidence 333344456666666666665543 33344445666666666665542 123334445555555555555432
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
. ++..+..+++|+.|++++|.+.+.....+ ..+++|+.|++++|.++.. ++..+..+++|+.|++++
T Consensus 299 ~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 299 E----IPELVIQLQNLEILHLFSNNFTGKIPVAL-----TSLPRLQVLQLWSNKFSGE----IPKNLGKHNNLTVLDLST 365 (968)
T ss_pred C----CChhHcCCCCCcEEECCCCccCCcCChhH-----hcCCCCCEEECcCCCCcCc----CChHHhCCCCCcEEECCC
Confidence 2 11233445555555555554433211111 1223444444444444431 333344444444444444
Q ss_pred CCCCcHHHH--------------------HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 397 NDIGDEGAE--------------------KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 397 n~l~~~~~~--------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
|.++..... .++..+..+++|+.|++++|.++... +..+..++.|+.|++++|.++
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL----PSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC----ChhHhcCCCCCEEECcCCccc
Confidence 433321000 02223333444555555555444321 112223344444444444443
Q ss_pred HHHHHHHHHHHhhC-----------------------CCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 457 ADGAKALSEVLKFH-----------------------GNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 457 ~~~~~~l~~~l~~~-----------------------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
.... ..+..+ ++|++|++++|+++...+..+. .+++|+.|++++|.+..
T Consensus 442 ~~~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 442 GRIN----SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG----SLSELMQLKLSENKLSG 513 (968)
T ss_pred CccC----hhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhh----hhhccCEEECcCCccee
Confidence 2211 111112 3455555555555443333222 23566666666666655
Q ss_pred HHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHH
Q 007577 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 579 (597)
Q Consensus 514 ~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 579 (597)
..+..+..+ ++|++|+|++|.++...+..+... .+|+.|+|++|.++......+.
T Consensus 514 ~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 514 EIPDELSSC-----KKLVSLDLSHNQLSGQIPASFSEM------PVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred eCChHHcCc-----cCCCEEECCCCcccccCChhHhCc------ccCCEEECCCCcccccCChhHh
Confidence 444444332 556777777776665555555443 2377777777777654444443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-29 Score=287.81 Aligned_cols=361 Identities=18% Similarity=0.199 Sum_probs=165.8
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+++|++|+|++|.+... ++..+..+++|+.|++++|.+... ++..+.++++|++|++++|.+... ++.
T Consensus 139 l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~ 206 (968)
T PLN00113 139 IPNLETLDLSNNMLSGE----IPNDIGSFSSLKVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQ----IPR 206 (968)
T ss_pred cCCCCEEECcCCccccc----CChHHhcCCCCCEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCc----CCh
Confidence 34444444444444321 233344445555555555544321 222233444555555555554332 223
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|+.|++++|.++.. ++..+.++++|++|++++|.++. .++..+..+++|++|++++|.+....
T Consensus 207 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~-- 276 (968)
T PLN00113 207 ELGQMKSLKWIYLGYNNLSGE----IPYEIGGLTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPI-- 276 (968)
T ss_pred HHcCcCCccEEECcCCccCCc----CChhHhcCCCCCEEECcCceecc----ccChhHhCCCCCCEEECcCCeeeccC--
Confidence 333445555555555554432 22333444555555555555432 23334445555555555555543221
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+.++++|++|++++|.+.......+ ..+++|+.|++++|.++.. ++..+..+++|+.|++++|.++
T Consensus 277 --p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 277 --PPSIFSLQKLISLDLSDNSLSGEIPELV-----IQLQNLEILHLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFS 345 (968)
T ss_pred --chhHhhccCcCEEECcCCeeccCCChhH-----cCCCCCcEEECCCCccCCc----CChhHhcCCCCCEEECcCCCCc
Confidence 1223445555566665555443211111 2334566666666655542 4445556666666666666555
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
.. ++..+..+++|+.|++++|.++.... ..+..+++|+.|++++|.+... +...+..+++|+.|++++
T Consensus 346 ~~----~p~~l~~~~~L~~L~Ls~n~l~~~~p----~~~~~~~~L~~L~l~~n~l~~~----~p~~~~~~~~L~~L~L~~ 413 (968)
T PLN00113 346 GE----IPKNLGKHNNLTVLDLSTNNLTGEIP----EGLCSSGNLFKLILFSNSLEGE----IPKSLGACRSLRRVRLQD 413 (968)
T ss_pred Cc----CChHHhCCCCCcEEECCCCeeEeeCC----hhHhCcCCCCEEECcCCEeccc----CCHHHhCCCCCCEEECcC
Confidence 43 33444455666666666665543211 1122224444444444443322 122233445566666666
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH--------------------HhhcCccccEEEccCCCC
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS--------------------FKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~--------------------l~~~n~~L~~L~Ls~n~i 540 (597)
|.++...+.. +..++.|+.|++++|.+++.....+... +. .++|+.|++++|++
T Consensus 414 n~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l 487 (968)
T PLN00113 414 NSFSGELPSE----FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQF 487 (968)
T ss_pred CEeeeECChh----HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCcc
Confidence 6554332222 2233555555555554443322222111 00 13455566666655
Q ss_pred ChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHH
Q 007577 541 RDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 541 ~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 578 (597)
+...+..+... .+|+.|+|++|.++......+
T Consensus 488 ~~~~~~~~~~l------~~L~~L~Ls~N~l~~~~p~~~ 519 (968)
T PLN00113 488 SGAVPRKLGSL------SELMQLKLSENKLSGEIPDEL 519 (968)
T ss_pred CCccChhhhhh------hccCEEECcCCcceeeCChHH
Confidence 54444444333 126666666666654444433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-30 Score=258.10 Aligned_cols=352 Identities=21% Similarity=0.214 Sum_probs=265.2
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.++.++++|++++|..|.++. ++.......+|+.|+|.+|.|+...-+.+.. .+.|++||||.|.|.....
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~-----IP~f~~~sghl~~L~L~~N~I~sv~se~L~~----l~alrslDLSrN~is~i~~ 166 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTR-----IPRFGHESGHLEKLDLRHNLISSVTSEELSA----LPALRSLDLSRNLISEIPK 166 (873)
T ss_pred HHHhcCCcceeeeeccchhhh-----cccccccccceeEEeeeccccccccHHHHHh----HhhhhhhhhhhchhhcccC
Confidence 566789999999999997765 4444444668999999999988766555543 3669999999999877655
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
..++.. .++++|+|++|.|++.+...|..+ .+|..|.|+.|+|+. .-...|.++++|+.|+|..|.|.
T Consensus 167 ~sfp~~----~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNritt----Lp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 167 PSFPAK----VNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITT----LPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred CCCCCC----CCceEEeecccccccccccccccc----chheeeecccCcccc----cCHHHhhhcchhhhhhcccccee
Confidence 444443 789999999999999877777665 789999999999963 22345556899999999999886
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
.... -.|.++++|+.|.|..|+|.. +-.+.+-.+.++++|+|..|++... -..++-++..|+.|+|+
T Consensus 235 ive~----ltFqgL~Sl~nlklqrN~I~k-----L~DG~Fy~l~kme~l~L~~N~l~~v----n~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 235 IVEG----LTFQGLPSLQNLKLQRNDISK-----LDDGAFYGLEKMEHLNLETNRLQAV----NEGWLFGLTSLEQLDLS 301 (873)
T ss_pred eehh----hhhcCchhhhhhhhhhcCccc-----ccCcceeeecccceeecccchhhhh----hcccccccchhhhhccc
Confidence 5422 347789999999999998765 4445555666899999999988873 33456678899999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCE
Q 007577 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (597)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (597)
+|.|... -.+.+..+++|+.|+|+.|+|+......+..+ ..|++|+|+.|.|+...-..+ ....+|++
T Consensus 302 ~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af----~~lssL~~ 369 (873)
T KOG4194|consen 302 YNAIQRI----HIDSWSFTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAF----VGLSSLHK 369 (873)
T ss_pred hhhhhee----ecchhhhcccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHH----HHhhhhhh
Confidence 9987654 23456667899999999999988777777666 889999999998865433333 33479999
Q ss_pred EecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhC
Q 007577 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKAN 555 (597)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 555 (597)
|+|+.|.++... +.-+..+..++.|+.|++.+|+|....-.++... +.|++|||.+|.|....+.+|... .
T Consensus 370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl-----~~LE~LdL~~NaiaSIq~nAFe~m-~-- 440 (873)
T KOG4194|consen 370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGL-----EALEHLDLGDNAIASIQPNAFEPM-E-- 440 (873)
T ss_pred hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhccC-----cccceecCCCCcceeecccccccc-h--
Confidence 999999865311 1122334456899999999999888877777665 779999999998887777777554 2
Q ss_pred CCCceeEEEcc
Q 007577 556 EDVAVTSLNLA 566 (597)
Q Consensus 556 ~~~~L~~L~L~ 566 (597)
|++|-+.
T Consensus 441 ----Lk~Lv~n 447 (873)
T KOG4194|consen 441 ----LKELVMN 447 (873)
T ss_pred ----hhhhhhc
Confidence 6666654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=217.35 Aligned_cols=349 Identities=25% Similarity=0.327 Sum_probs=250.6
Q ss_pred HHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC------hHHHHHHHHHHHcCCCccEEEecc
Q 007577 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKNNSILRVLELNN 283 (597)
Q Consensus 210 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~~L~Ls~ 283 (597)
+...+.....+++++||+|.++......++..+.+.++|+..++++-... ...+..+...+..++.|++||||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33333444455555555555555555555555555555555555543211 122344555555666677777777
Q ss_pred CCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccce
Q 007577 284 NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (597)
Q Consensus 284 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 363 (597)
|-++..++..+...+.++..|++|.|.+|.++..+...+..++..+. .++ .....++|+.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~k------------k~~~~~~Lrv 161 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNK------------KAASKPKLRV 161 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHh------------ccCCCcceEE
Confidence 77777766666666666667777777777666666655554433221 000 0023347888
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCC
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 443 (597)
+...+|++-+.+...++..++..+.|+.+.++.|.|..+|+..+..++..|++|+.|||.+|-++..+...++..++..+
T Consensus 162 ~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 162 FICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred EEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 88888888888888888888888899999999998888888888888888999999999999999999889999888888
Q ss_pred CcCEEECcCCCCCHHHHHHHHHHHhh-CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC--ChHHHHHHH
Q 007577 444 VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL--RDEGAKCLA 520 (597)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i--~~~~~~~l~ 520 (597)
.|++|++++|.+.+.|...+.+.+.. .++|++|.+.+|.|+..+...++.++..-+.|+.|+|++|.+ .+++...+.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~ 321 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIA 321 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHH
Confidence 99999999999988888888777654 688999999999998888888888887788999999999988 777777777
Q ss_pred HHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 521 ~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
..+......+...+-+.+.+.+++-............ -+.++..++.+.+.+.+.+..
T Consensus 322 ~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t--~~e~~ed~e~ie~e~~ee~~e 379 (382)
T KOG1909|consen 322 SKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKET--FKELNEDGEVIEEEGIEELKE 379 (382)
T ss_pred HhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCc--chhhcccccccchhHHHHhhh
Confidence 7652222346677778888888888777766555444 677888888888888776654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=218.09 Aligned_cols=352 Identities=24% Similarity=0.339 Sum_probs=250.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC------HHHHHHHHHHhhhCCCcc
Q 007577 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT------AAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~------~~~~~~l~~~l~~~~~L~ 221 (597)
..+.+.+.+......++++|+|+||.++.+..+.++..+...++|+..++++--.+ ...+..|...+..++.|+
T Consensus 16 ~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~ 95 (382)
T KOG1909|consen 16 EEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQ 95 (382)
T ss_pred HhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCcee
Confidence 34455566666677889999999999999999999999999999999999886311 123555666677777788
Q ss_pred EEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhC
Q 007577 222 TLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN 301 (597)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 301 (597)
+||||.|-++..+...+...+.+|..|++|.|.+|.+...+...++..+ .+|. .+ ..+...
T Consensus 96 ~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al------~~l~--~~-----------kk~~~~ 156 (382)
T KOG1909|consen 96 KLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRAL------FELA--VN-----------KKAASK 156 (382)
T ss_pred EeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHH------HHHH--HH-----------hccCCC
Confidence 8888888888777777777777778888888888887777777666653 2222 11 111234
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
+.|+.+...+|.+.+.+...++..++.++.|+.+.+..|.|...++..+...+. .+++|+.|||.+|-++..+...++.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHH
Confidence 678888888888888888888888888888888888888888888866666665 5568888888888888888888888
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC--CHH
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI--GAD 458 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i--~~~ 458 (597)
.++.+++|+.|++++|.+.+.|...+..++.. .+.|+.|.+.+|.|+.++...++..+...|.|+.|+|++|.+ .++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de 315 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDE 315 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccch
Confidence 88888888888888888888888888888775 678888888888888888888877777778888888888887 555
Q ss_pred HHHHHHHHHhh-CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 459 GAKALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 459 ~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
++..+...+.. ...+...+.+.+.+.+.+.............-+.+++.++.+.+.+...+
T Consensus 316 ~i~ei~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~ 377 (382)
T KOG1909|consen 316 GIDEIASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEEL 377 (382)
T ss_pred hHHHHHHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHh
Confidence 55555544311 11233333344444444444444444444444555555555555444443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-28 Score=235.31 Aligned_cols=377 Identities=21% Similarity=0.244 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC
Q 007577 148 RESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227 (597)
Q Consensus 148 ~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 227 (597)
..+.+.+.+-++++..+++|++.+|++.. ++.+++....++.++.++|++. .++..+....+|++++.++
T Consensus 54 ~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-----lp~aig~l~~l~~l~vs~n~ls-----~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 54 HNDLEVLREDLKNLACLTVLNVHDNKLSQ-----LPAAIGELEALKSLNVSHNKLS-----ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cCchhhccHhhhcccceeEEEeccchhhh-----CCHHHHHHHHHHHhhcccchHh-----hccHHHhhhhhhhhhhccc
Confidence 33444455566778889999999887654 4556666677888888888754 3555555666777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCcCEEEecCCCCCh-----------------------HHHHHHHHHHHcCCCccEEEeccC
Q 007577 228 NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRD-----------------------EGAKAIAELLKNNSILRVLELNNN 284 (597)
Q Consensus 228 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~-----------------------~~~~~l~~~l~~~~~L~~L~Ls~n 284 (597)
|.+.. +...++.+..++.|+..+|+++. .....+. ++.|++||...|
T Consensus 124 n~~~e-----l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-----m~~L~~ld~~~N 193 (565)
T KOG0472|consen 124 NELKE-----LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-----MKRLKHLDCNSN 193 (565)
T ss_pred cceee-----cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-----HHHHHhcccchh
Confidence 76543 22333334455555555555443 2111111 245666666665
Q ss_pred CCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccccee
Q 007577 285 MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364 (597)
Q Consensus 285 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 364 (597)
.+ ..++..++.+.+|+.|++.+|++...+ .|.+|..|++|+++.|.|.- +.+.....++.+..|
T Consensus 194 ~L-----~tlP~~lg~l~~L~~LyL~~Nki~~lP------ef~gcs~L~Elh~g~N~i~~-----lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 194 LL-----ETLPPELGGLESLELLYLRRNKIRFLP------EFPGCSLLKELHVGENQIEM-----LPAEHLKHLNSLLVL 257 (565)
T ss_pred hh-----hcCChhhcchhhhHHHHhhhcccccCC------CCCccHHHHHHHhcccHHHh-----hHHHHhcccccceee
Confidence 54 455666666666777777777655432 24556666666666665433 333333455567777
Q ss_pred eccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC-----------------
Q 007577 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI----------------- 427 (597)
Q Consensus 365 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l----------------- 427 (597)
||.+|++.. +|+.+..+++|.+||+++|.|+. ++-.++++ +|+.|.+.||.+
T Consensus 258 DLRdNklke-----~Pde~clLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 258 DLRDNKLKE-----VPDEICLLRSLERLDLSNNDISS-----LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred ecccccccc-----CchHHHHhhhhhhhcccCCcccc-----CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 777777666 55666666667777777766654 33444444 555555555544
Q ss_pred ------------------------------------------------ChHHHH--------------------------
Q 007577 428 ------------------------------------------------HSKGAS-------------------------- 433 (597)
Q Consensus 428 ------------------------------------------------~~~~~~-------------------------- 433 (597)
+....+
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 111111
Q ss_pred -------------------HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHH
Q 007577 434 -------------------AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM 494 (597)
Q Consensus 434 -------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 494 (597)
.++..+++.++|..|+|++|.+.+. +..+.....|+.|+++.|.+ ..+..+
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-----P~e~~~lv~Lq~LnlS~NrF-----r~lP~~ 476 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-----PEEMGSLVRLQTLNLSFNRF-----RMLPEC 476 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-----chhhhhhhhhheeccccccc-----ccchHH
Confidence 1122233445555555555544332 11112223455555555544 223333
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhh
Q 007577 495 LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574 (597)
Q Consensus 495 l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~ 574 (597)
++....++.+-.++|+|+...+..+..+ .+|.+||+.+|++. ..+..++++ ++|++|+++||+|....
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm-----~nL~tLDL~nNdlq-~IPp~Lgnm------tnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNM-----RNLTTLDLQNNDLQ-QIPPILGNM------TNLRHLELDGNPFRQPR 544 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhh-----hhcceeccCCCchh-hCChhhccc------cceeEEEecCCccCCCH
Confidence 3334455555556666666666666665 77999999999987 456667766 45999999999999999
Q ss_pred HHHHHHHHHHHhhhhhcce
Q 007577 575 QSALTDAKDLVYEMSEKEV 593 (597)
Q Consensus 575 ~~~l~~~~~~~~~l~~~~l 593 (597)
.+.+..++..+..+-...+
T Consensus 545 ~~iLmkgT~aiL~ylrdrI 563 (565)
T KOG0472|consen 545 HQILMKGTAAILSYLRDRI 563 (565)
T ss_pred HHHhccChHHHHHHhcccC
Confidence 9999999988888766554
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-26 Score=232.56 Aligned_cols=334 Identities=19% Similarity=0.187 Sum_probs=252.7
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEcc
Q 007577 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (597)
Q Consensus 147 ~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls 226 (597)
.+.....+.+-+..+..|++|.+++|++.. +...+..++.|+.+.+.+|++...| ++.-+..+..|..||||
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~-----vhGELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLIS-----VHGELSDLPRLRSVIVRDNNLKNSG---IPTDIFRLKDLTILDLS 111 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHh-----hhhhhccchhhHHHhhhccccccCC---CCchhcccccceeeecc
Confidence 344455566667788889999999887654 3445567788999999998876554 23334566789999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccE
Q 007577 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRS 306 (597)
Q Consensus 227 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 306 (597)
+|++.+ .+..+.+-+++-.|+|++|+|..+.-..+.. +..|-.|||++|++ +.++..+..+..|++
T Consensus 112 hNqL~E-----vP~~LE~AKn~iVLNLS~N~IetIPn~lfin----LtDLLfLDLS~NrL-----e~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 112 HNQLRE-----VPTNLEYAKNSIVLNLSYNNIETIPNSLFIN----LTDLLFLDLSNNRL-----EMLPPQIRRLSMLQT 177 (1255)
T ss_pred hhhhhh-----cchhhhhhcCcEEEEcccCccccCCchHHHh----hHhHhhhccccchh-----hhcCHHHHHHhhhhh
Confidence 999876 5667777799999999999988764444444 37788999999998 777888888899999
Q ss_pred EEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC
Q 007577 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386 (597)
Q Consensus 307 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 386 (597)
|.|++|.+...... -+..+.+|+.|++++.+-+-..++.-...+ .+|..+|++.|++.. +|+.+-++
T Consensus 178 L~Ls~NPL~hfQLr----QLPsmtsL~vLhms~TqRTl~N~Ptsld~l----~NL~dvDlS~N~Lp~-----vPecly~l 244 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLR----QLPSMTSLSVLHMSNTQRTLDNIPTSLDDL----HNLRDVDLSENNLPI-----VPECLYKL 244 (1255)
T ss_pred hhcCCChhhHHHHh----cCccchhhhhhhcccccchhhcCCCchhhh----hhhhhccccccCCCc-----chHHHhhh
Confidence 99999987665553 345677888999998865544333333333 389999999999988 88999999
Q ss_pred CCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHH
Q 007577 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV 466 (597)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (597)
++|+.|+|++|.|+.- ......-.+|++|+|+.|+++. ++..+.++++|+.|.+.+|+++-+| ++..
T Consensus 245 ~~LrrLNLS~N~iteL-----~~~~~~W~~lEtLNlSrNQLt~-----LP~avcKL~kL~kLy~n~NkL~FeG---iPSG 311 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITEL-----NMTEGEWENLETLNLSRNQLTV-----LPDAVCKLTKLTKLYANNNKLTFEG---IPSG 311 (1255)
T ss_pred hhhheeccCcCceeee-----eccHHHHhhhhhhccccchhcc-----chHHHhhhHHHHHHHhccCcccccC---Cccc
Confidence 9999999999999873 2223334689999999999886 6677777799999999999887665 4566
Q ss_pred HhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007577 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (597)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~ 539 (597)
++.+.+|+++...+|.+ +.....+..|..|+.|.++.|++-.. .+.+.. -+.|+.||+..|.
T Consensus 312 IGKL~~Levf~aanN~L-----ElVPEglcRC~kL~kL~L~~NrLiTL-----PeaIHl-L~~l~vLDlreNp 373 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKL-----ELVPEGLCRCVKLQKLKLDHNRLITL-----PEAIHL-LPDLKVLDLRENP 373 (1255)
T ss_pred hhhhhhhHHHHhhcccc-----ccCchhhhhhHHHHHhcccccceeec-----hhhhhh-cCCcceeeccCCc
Confidence 66678999999999987 34566777889999999999976542 222221 1679999999984
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-25 Score=221.41 Aligned_cols=348 Identities=18% Similarity=0.226 Sum_probs=265.5
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.-+++.+.++.|.|....+ ..+++.++++.+|+.|.+++|++. .+...+..++.|+.+++..|++.+.|
T Consensus 26 ~~v~qMt~~~WLkLnrt~L-----~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGELs~Lp~LRsv~~R~N~LKnsG- 94 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKL-----EQVPEELSRLQKLEHLSMAHNQLI-----SVHGELSDLPRLRSVIVRDNNLKNSG- 94 (1255)
T ss_pred hhHHHhhheeEEEechhhh-----hhChHHHHHHhhhhhhhhhhhhhH-----hhhhhhccchhhHHHhhhccccccCC-
Confidence 3345677788888876544 447888888999999999999864 34556677889999999999998776
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH-hhCCCccEEEcCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL-LENSTIRSLHLNGNYG 314 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i 314 (597)
++.-+.++..|..|+|++|++.. .+..+..-+++..|+|++|+| +.|+..+ .+++.|-.|+|++|.+
T Consensus 95 --iP~diF~l~dLt~lDLShNqL~E-----vP~~LE~AKn~iVLNLS~N~I-----etIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 95 --IPTDIFRLKDLTILDLSHNQLRE-----VPTNLEYAKNSIVLNLSYNNI-----ETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred --CCchhcccccceeeecchhhhhh-----cchhhhhhcCcEEEEcccCcc-----ccCCchHHHhhHhHhhhccccchh
Confidence 55556677999999999999876 445555668999999999998 4455443 3577888999999987
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEc
Q 007577 315 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394 (597)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 394 (597)
...+ .-+..+..|+.|+|++|.+....++.+ ..+..|+.|.+++.+-+-. .+|..+..+.+|..+|+
T Consensus 163 e~LP-----PQ~RRL~~LqtL~Ls~NPL~hfQLrQL-----PsmtsL~vLhms~TqRTl~---N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 163 EMLP-----PQIRRLSMLQTLKLSNNPLNHFQLRQL-----PSMTSLSVLHMSNTQRTLD---NIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hhcC-----HHHHHHhhhhhhhcCCChhhHHHHhcC-----ccchhhhhhhcccccchhh---cCCCchhhhhhhhhccc
Confidence 6544 446678899999999998877656555 3445788899988654433 46777888899999999
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcC
Q 007577 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474 (597)
Q Consensus 395 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 474 (597)
+.|.+.. +++++.++++|+.|+|++|.|+.... ....+ .+|++|++|.|+++. ++..+..+++|+
T Consensus 230 S~N~Lp~-----vPecly~l~~LrrLNLS~N~iteL~~-~~~~W----~~lEtLNlSrNQLt~-----LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 230 SENNLPI-----VPECLYKLRNLRRLNLSGNKITELNM-TEGEW----ENLETLNLSRNQLTV-----LPDAVCKLTKLT 294 (1255)
T ss_pred cccCCCc-----chHHHhhhhhhheeccCcCceeeeec-cHHHH----hhhhhhccccchhcc-----chHHHhhhHHHH
Confidence 9998876 78888899999999999999987432 22333 789999999998864 566667779999
Q ss_pred EEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHh
Q 007577 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKA 554 (597)
Q Consensus 475 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 554 (597)
.|.+.+|+++-.| +..++.+..+|+.+..++|.+.- .+..++.+ ..|+.|.|+.|++- ..+.+|--.
T Consensus 295 kLy~n~NkL~FeG---iPSGIGKL~~Levf~aanN~LEl-VPEglcRC-----~kL~kL~L~~NrLi-TLPeaIHlL--- 361 (1255)
T KOG0444|consen 295 KLYANNNKLTFEG---IPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC-----VKLQKLKLDHNRLI-TLPEAIHLL--- 361 (1255)
T ss_pred HHHhccCcccccC---CccchhhhhhhHHHHhhcccccc-Cchhhhhh-----HHHHHhccccccee-echhhhhhc---
Confidence 9999999987654 34556666889999999997654 35567776 56999999999754 123344222
Q ss_pred CCCCceeEEEcccCcc
Q 007577 555 NEDVAVTSLNLANNFL 570 (597)
Q Consensus 555 ~~~~~L~~L~L~~N~i 570 (597)
..|..||+..|.-
T Consensus 362 ---~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 362 ---PDLKVLDLRENPN 374 (1255)
T ss_pred ---CCcceeeccCCcC
Confidence 2389999998753
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-22 Score=203.95 Aligned_cols=415 Identities=29% Similarity=0.394 Sum_probs=344.3
Q ss_pred HHHHHhcCCCcEEEcCCCCCCHHH---HHHHHHHhcc--CCC--ccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC
Q 007577 155 NEFAKELRAFSSVDMSGRNFGDEG---LFFLAESLGY--NQT--AEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227 (597)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l~~~~---~~~l~~~l~~--~~~--L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 227 (597)
.......+.+..+.++.+...+.+ .......+.. .+. +..|+|.+|.+.+.+...+...+..+++|..|++++
T Consensus 45 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~ 124 (478)
T KOG4308|consen 45 RSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSG 124 (478)
T ss_pred HHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhccc
Confidence 344444566677777777666555 2222233332 222 889999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcC-CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhh----CC
Q 007577 228 NPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE----NS 302 (597)
Q Consensus 228 n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~----~~ 302 (597)
|.+++.+...+++.+... +.++.|++..|.++..+...++..+..+..++.++++.|.+...+...+..++.. ..
T Consensus 125 n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~ 204 (478)
T KOG4308|consen 125 NNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLS 204 (478)
T ss_pred CCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccc
Confidence 999999999999998885 7899999999999999999999999999999999999999988888888888875 67
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
++++|.+.+|.++......+...+...+. +.+|++..|.+.+.++..+...+....+.++.++++.|.|++.+...+.+
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 89999999999999888888888888887 88899999999999999998888766578999999999999999999999
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC-ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHH
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (597)
.+..++.++.|.++.|.+.+.+...+.+.+.....+.++-+.++.. +..+...++........+.....+++...+++.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGL 364 (478)
T ss_pred HHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHH
Confidence 9999999999999999999999999999988888888888886644 443444444444444556667778888888777
Q ss_pred HHHHHHHhhCCC-cCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCC
Q 007577 461 KALSEVLKFHGN-INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539 (597)
Q Consensus 461 ~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~ 539 (597)
..+......... +..+++..+.+.+.+...++..+..+..+++++++.|...+++...+....+... .++.++++.|.
T Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 365 ALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred HHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 776666544333 7778888888888888888888888999999999999999998888888776655 89999999999
Q ss_pred CChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 540 i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
++..+.....+....+.. +....+.+|.++-
T Consensus 444 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 474 (478)
T KOG4308|consen 444 ITALGTEELQRALALNPG--ILAIRLRGNVIGR 474 (478)
T ss_pred hhhcchHHHHHHHhcCCC--cceeecccCcccc
Confidence 999999999988887776 8888888887764
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-21 Score=200.69 Aligned_cols=374 Identities=20% Similarity=0.203 Sum_probs=207.0
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.-+|+.|||++|++.+.+ ..+....+|+.|+++.|.|... +..+.++.+|++|+|.+|.+.. ++.
T Consensus 44 ~v~L~~l~lsnn~~~~fp-----~~it~l~~L~~ln~s~n~i~~v-----p~s~~~~~~l~~lnL~~n~l~~-----lP~ 108 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFP-----IQITLLSHLRQLNLSRNYIRSV-----PSSCSNMRNLQYLNLKNNRLQS-----LPA 108 (1081)
T ss_pred eeeeEEeeccccccccCC-----chhhhHHHHhhcccchhhHhhC-----chhhhhhhcchhheeccchhhc-----Cch
Confidence 444888888888877643 2233345777777777765432 2334455677777777776543 444
Q ss_pred HHhcCCCcCEEEecCCCCChHHH--HHHHHH-------------HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGA--KAIAEL-------------LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR 305 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~--~~l~~~-------------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 305 (597)
.+..+.+|++|++++|+++.... ...... ++. ..++++++..|.+.+. +...+..+..
T Consensus 109 ~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-~~ik~~~l~~n~l~~~----~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 109 SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-TSIKKLDLRLNVLGGS----FLIDIYNLTH-- 181 (1081)
T ss_pred hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-ccchhhhhhhhhcccc----hhcchhhhhe--
Confidence 55556777777777776553110 000000 111 1134444444443321 1111111122
Q ss_pred EEEcCCCCCChHHHHHHHH-------------HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCC
Q 007577 306 SLHLNGNYGGALGANALAK-------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (597)
Q Consensus 306 ~L~L~~n~i~~~~~~~l~~-------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (597)
.|+|.+|.+.......+.. .--..++|+.|+.+.|.++..... ....+|+.+++++|.++
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~-------p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH-------PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-------cccccceeeecchhhhh
Confidence 3566665554222111100 000124555666666655422111 11127888888888888
Q ss_pred hhHHHHHHHHHHcCCCCcEEEccCCCCCcHH------------------HHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEG------------------AEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 373 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
. ++.++..|.+|+.|+..+|.+...- ++.++..+...+.|++|+|..|+|.......
T Consensus 255 ~-----lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 255 N-----LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred c-----chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence 7 6788888888888888888764311 1122223334567888999888775432211
Q ss_pred HHHH------h---------------hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHH
Q 007577 435 IARV------L---------------KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (597)
Q Consensus 435 l~~~------l---------------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (597)
+.-. + ...+.|+.|.+.+|.+++..+..+. ...+||.|+|++|++.......+.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~----~~~hLKVLhLsyNrL~~fpas~~~- 404 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV----NFKHLKVLHLSYNRLNSFPASKLR- 404 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc----cccceeeeeecccccccCCHHHHh-
Confidence 1110 0 0123455666666777666544443 347888888888877655444443
Q ss_pred HHhcCCCccEEEccCCCCChHHHHHHHH--HH----hhc-----------CccccEEEccCCCCChHHHHHHHHHHHhCC
Q 007577 494 MLRYNNTISILDLRANGLRDEGAKCLAQ--SF----KVV-----------NEALTSIDLAFNEIRDDGAFAIAQALKANE 556 (597)
Q Consensus 494 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~--~l----~~~-----------n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 556 (597)
+...|++|+++||+++.... .++. .+ .+. .+.|+.+|++.|+++.........
T Consensus 405 ---kle~LeeL~LSGNkL~~Lp~-tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p------ 474 (1081)
T KOG0618|consen 405 ---KLEELEELNLSGNKLTTLPD-TVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALP------ 474 (1081)
T ss_pred ---chHHhHHHhcccchhhhhhH-HHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCC------
Confidence 34778888888887765432 1111 00 001 177999999999998654443322
Q ss_pred CCceeEEEcccCccchhhHHHHHHHHH
Q 007577 557 DVAVTSLNLANNFLTKFGQSALTDAKD 583 (597)
Q Consensus 557 ~~~L~~L~L~~N~i~~~~~~~l~~~~~ 583 (597)
..+|++|||+||.-.....+.|.....
T Consensus 475 ~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred CcccceeeccCCcccccchhhhHHhhh
Confidence 246999999999877777776655533
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-20 Score=189.61 Aligned_cols=405 Identities=25% Similarity=0.324 Sum_probs=255.9
Q ss_pred HHHHhccCCCccEEEeccCCCCHHHH---HHHHHHhhhC--CC--ccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEec
Q 007577 182 LAESLGYNQTAEEVSFAANGITAAGI---KAFDGVLQSN--IA--LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLS 254 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~~~---~~l~~~l~~~--~~--L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 254 (597)
+...+...+.+..+.+.+|..+..+. ......+... +- +..|.|.+|.+.+.+...++..+..++.|+.|+++
T Consensus 44 l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~ 123 (478)
T KOG4308|consen 44 LRSLLRRNTTLTELVLQSCSLSGRGRCFVLELLELLREPLNKLASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS 123 (478)
T ss_pred HHHhhhhccchhhhhhhhhhccccccchHHHHHHhhccccchhhhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcc
Confidence 44444456778888888887666552 1111121111 11 66677777777777777777777767777777777
Q ss_pred CCCCChHHHHHHHHHHHcC-CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhc----C
Q 007577 255 SVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG----N 329 (597)
Q Consensus 255 ~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~ 329 (597)
+|.+++.+...+...+... ..+++|++..|.+++.+...+...+..+..++.++++.|.+...+...+...+.. .
T Consensus 124 ~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~ 203 (478)
T KOG4308|consen 124 GNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPL 203 (478)
T ss_pred cCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhccc
Confidence 7777777777776666654 5566677777777777767777666666667777777766665555555555553 4
Q ss_pred CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC-CCCcEEEccCCCCCcHHHHHHH
Q 007577 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKIA 408 (597)
Q Consensus 330 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~ 408 (597)
.++++|++++|.++..+...+...+......+..|++.+|.+.+.+...+...+... ..++++++..|.|++.+...+.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 456666666666666655555555544433355566666666666666666666555 5666666666666666666666
Q ss_pred HHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH-HHHHHHHHHhhCCCcCEEecCCCCCChhH
Q 007577 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFHGNINTLKLGWCQIGASG 487 (597)
Q Consensus 409 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (597)
+.+..++.++++.++.|.+.+.+...+...+.....+..+-+.++..... +...+.........+.....+++...+.+
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEG 363 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHH
Confidence 66666666666666666666666666666666555565665554433222 22222222222233333444444555555
Q ss_pred HHHHHHHHhcCCC-ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 488 AEFVADMLRYNNT-ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 488 ~~~l~~~l~~~~~-L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
...+......-+. +..+++..+.+.+.+...++.... .++.+..++++.|...+++...+....+.+- .++.+.++
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~--~~~~~~l~ 440 (478)
T KOG4308|consen 364 LALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLA-SNEKLEILDLSLNSLHDEGAEVLTEQLSRNG--SLKALRLS 440 (478)
T ss_pred HHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhh-hcchhhhhhhhcCccchhhHHHHHHhhhhcc--cchhhhhc
Confidence 4444444333333 667777777777777777766654 3578999999999988888888888877766 59999999
Q ss_pred cCccchhhHHHHHHHHHHHhhhh
Q 007577 567 NNFLTKFGQSALTDAKDLVYEMS 589 (597)
Q Consensus 567 ~N~i~~~~~~~l~~~~~~~~~l~ 589 (597)
.|.++..+.+...+.......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~ 463 (478)
T KOG4308|consen 441 RNPITALGTEELQRALALNPGIL 463 (478)
T ss_pred cChhhhcchHHHHHHHhcCCCcc
Confidence 99999999988888765554443
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-20 Score=196.01 Aligned_cols=269 Identities=23% Similarity=0.228 Sum_probs=176.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 297 (597)
++|+.|+.++|.+....... ...+|+++++++|+++. +++++..+.+|+.++..+|++ ..++..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p------~p~nl~~~dis~n~l~~-----lp~wi~~~~nle~l~~n~N~l-----~~lp~r 282 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP------VPLNLQYLDISHNNLSN-----LPEWIGACANLEALNANHNRL-----VALPLR 282 (1081)
T ss_pred cchheeeeccCcceeecccc------ccccceeeecchhhhhc-----chHHHHhcccceEecccchhH-----HhhHHH
Confidence 44555566666554221111 12567777777776665 456666667777777777776 444555
Q ss_pred HhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHH
Q 007577 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (597)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (597)
+....+|+.|.+..|.+... +..+...+.|++|+|..|.+.+.... +.. .....|..|+.+.|.+...-
T Consensus 283 i~~~~~L~~l~~~~nel~yi-----p~~le~~~sL~tLdL~~N~L~~lp~~-~l~---v~~~~l~~ln~s~n~l~~lp-- 351 (1081)
T KOG0618|consen 283 ISRITSLVSLSAAYNELEYI-----PPFLEGLKSLRTLDLQSNNLPSLPDN-FLA---VLNASLNTLNVSSNKLSTLP-- 351 (1081)
T ss_pred HhhhhhHHHHHhhhhhhhhC-----CCcccccceeeeeeehhccccccchH-HHh---hhhHHHHHHhhhhccccccc--
Confidence 55566777777776655432 23345577888888888887653221 111 11113666666666655410
Q ss_pred HHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
...=...+.|+.|.+.+|.++|. ....+...++||.|+|++|++..-....+.+ ++.|++|+||+|+++.
T Consensus 352 --~~~e~~~~~Lq~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k----le~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 352 --SYEENNHAALQELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPASKLRK----LEELEELNLSGNKLTT 421 (1081)
T ss_pred --cccchhhHHHHHHHHhcCccccc----chhhhccccceeeeeecccccccCCHHHHhc----hHHhHHHhcccchhhh
Confidence 00011234688899999999987 4455666789999999999888755444444 4889999999998865
Q ss_pred HHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007577 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~ 537 (597)
++..+..+..|++|...+|++.... .++ ..++|+.+|++.|.++.......... ++|++||+++
T Consensus 422 -----Lp~tva~~~~L~tL~ahsN~l~~fP--e~~----~l~qL~~lDlS~N~L~~~~l~~~~p~-----p~LkyLdlSG 485 (1081)
T KOG0618|consen 422 -----LPDTVANLGRLHTLRAHSNQLLSFP--ELA----QLPQLKVLDLSCNNLSEVTLPEALPS-----PNLKYLDLSG 485 (1081)
T ss_pred -----hhHHHHhhhhhHHHhhcCCceeech--hhh----hcCcceEEecccchhhhhhhhhhCCC-----cccceeeccC
Confidence 5566677789999999999986543 333 34899999999999887654443322 7899999999
Q ss_pred CC
Q 007577 538 NE 539 (597)
Q Consensus 538 n~ 539 (597)
|.
T Consensus 486 N~ 487 (1081)
T KOG0618|consen 486 NT 487 (1081)
T ss_pred Cc
Confidence 95
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=151.42 Aligned_cols=260 Identities=19% Similarity=0.201 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCH------HHHHHHHHHhhhCCCccE
Q 007577 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITA------AGIKAFDGVLQSNIALKT 222 (597)
Q Consensus 149 ~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~------~~~~~l~~~l~~~~~L~~ 222 (597)
.+.+..-+-+.....+++++||||.|+.+.+..++..+..-++|+..++++-..+. ..+..+..++-.||.|+.
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 33444444444567788888888888888888888888877788888877653211 123333444445555555
Q ss_pred EEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC
Q 007577 223 LNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302 (597)
Q Consensus 223 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 302 (597)
++||.|-++......+.+.+.+...|++|.+++|.+...+-..++..+.. | ..|+ -...-|
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~------l--a~nK-----------Kaa~kp 157 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH------L--AYNK-----------KAADKP 157 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH------H--HHHh-----------hhccCC
Confidence 55555555555555555555555555555555555554444444433211 0 0110 001235
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
.|+......|++..-+...++..+..-..|+++.+..|.|...|+..+...-...+.+|+.||+.+|-++..+...++..
T Consensus 158 ~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~a 237 (388)
T COG5238 158 KLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADA 237 (388)
T ss_pred CceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHH
Confidence 66677776666655555555555555567777777777777776665544322334467777777777777666667777
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhc--CCCccEEEccCCCC
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNI 427 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l 427 (597)
++..+.|+.|.+..|-++..|...+...+.. .++|..|...+|.+
T Consensus 238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 7777777777777777777666666666543 45666666666543
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-21 Score=181.61 Aligned_cols=307 Identities=21% Similarity=0.222 Sum_probs=182.0
Q ss_pred HHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChH
Q 007577 182 LAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDE 261 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~ 261 (597)
++.-++.+.+|+.|++..|+|.. ++ .+..|..|++|+++.|+|.-.. ++.+.++++|..||+++|+++.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~-----lP-ef~gcs~L~Elh~g~N~i~~lp----ae~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRF-----LP-EFPGCSLLKELHVGENQIEMLP----AEHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred CChhhcchhhhHHHHhhhccccc-----CC-CCCccHHHHHHHhcccHHHhhH----HHHhcccccceeeecccccccc-
Confidence 44455555666666666666541 22 3455666777777766664432 1223345777777777777765
Q ss_pred HHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH-------HHHHHHhhc------
Q 007577 262 GAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA-------NALAKGLEG------ 328 (597)
Q Consensus 262 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~------ 328 (597)
++..+..+++|+.||+++|.|+ .++-.++++ +|+.|.+.||.+...-. +.+.+.+..
T Consensus 267 ----~Pde~clLrsL~rLDlSNN~is-----~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg 336 (565)
T KOG0472|consen 267 ----VPDEICLLRSLERLDLSNNDIS-----SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG 336 (565)
T ss_pred ----CchHHHHhhhhhhhcccCCccc-----cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence 3344444567777777777763 344455555 67777777775433211 111111111
Q ss_pred ------------------------CCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 329 ------------------------NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 329 ------------------------~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
..+.+.|++++-.+++... .+++..... -....+++.|++.. +|..+.
T Consensus 337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPd-EVfea~~~~--~Vt~VnfskNqL~e-----lPk~L~ 408 (565)
T KOG0472|consen 337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPD-EVFEAAKSE--IVTSVNFSKNQLCE-----LPKRLV 408 (565)
T ss_pred CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCH-HHHHHhhhc--ceEEEecccchHhh-----hhhhhH
Confidence 1123444444443332111 111111111 24556666665554 444444
Q ss_pred cCCCC-cEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 385 NCKSL-LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 385 ~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
.++.+ +.+.+++|.++- ++..++..++|..|+|++|.+.+ ++.-++..-.|+.||+++|.+. .+
T Consensus 409 ~lkelvT~l~lsnn~isf-----v~~~l~~l~kLt~L~L~NN~Ln~-----LP~e~~~lv~Lq~LnlS~NrFr-----~l 473 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISF-----VPLELSQLQKLTFLDLSNNLLND-----LPEEMGSLVRLQTLNLSFNRFR-----ML 473 (565)
T ss_pred HHHHHHHHHHhhcCcccc-----chHHHHhhhcceeeecccchhhh-----cchhhhhhhhhheecccccccc-----cc
Confidence 43333 233455555543 45566778999999999998776 3334444567999999999764 34
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
++.+.....++.+-.++|+++...+..+. .+.+|..||+.+|.+... +..++.+ .+|++|++++|.|..
T Consensus 474 P~~~y~lq~lEtllas~nqi~~vd~~~l~----nm~nL~tLDL~nNdlq~I-Pp~Lgnm-----tnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 474 PECLYELQTLETLLASNNQIGSVDPSGLK----NMRNLTTLDLQNNDLQQI-PPILGNM-----TNLRHLELDGNPFRQ 542 (565)
T ss_pred hHHHhhHHHHHHHHhccccccccChHHhh----hhhhcceeccCCCchhhC-Chhhccc-----cceeEEEecCCccCC
Confidence 45544456788888888999887666444 448999999999987765 4456666 789999999999983
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=143.70 Aligned_cols=271 Identities=18% Similarity=0.171 Sum_probs=186.6
Q ss_pred ccccchhhhHHHHHHHHHHHHhcCCCcEEEcCCCCCC------HHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHH
Q 007577 139 LSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFG------DEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDG 212 (597)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~ 212 (597)
+...+..+..+..+.+...+.+-++|+..+++.-..+ ...+..+.+++.+|++|+.++|++|.++......+..
T Consensus 35 vdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 35 VDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred EeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 3445667788888999999999999999999875332 2356677888899999999999999999888888999
Q ss_pred HhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHH
Q 007577 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292 (597)
Q Consensus 213 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 292 (597)
.+.+.+.|++|.+++|.++..+-..++..+.++.. | +-..+-|.|+......|++..-...
T Consensus 115 ~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~--------n-----------KKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 115 LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY--------N-----------KKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH--------H-----------hhhccCCCceEEEeccchhccCcHH
Confidence 99999999999999999987766666655432110 1 0111225666666666666444333
Q ss_pred HHHHHHhhCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCC
Q 007577 293 SLAEALLENSTIRSLHLNGNYGGALGANALA-KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371 (597)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 371 (597)
..+..+..-..|+++.+..|.|...+..++. ..+..+.+|+.|++..|.++..+-..++..+..+. .|+.|.+.+|-+
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDCll 254 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhh
Confidence 3343443335677777777777766665543 34667788888888888888888888887776554 588999999988
Q ss_pred ChhHHHHHHHHHHc--CCCCcEEEccCCCCCcHHHHH--HHHHHh-cCCCccEEEccCCCCCh
Q 007577 372 SAKGAFHVAEYIKN--CKSLLWINLYMNDIGDEGAEK--IADALK-QNRTITTIDLGGNNIHS 429 (597)
Q Consensus 372 ~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~--l~~~l~-~~~~L~~L~L~~n~l~~ 429 (597)
+..|...+...+.. .|+|..|...+|.+....+.. +..... .++-|..|.+.||+|..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 88888777776654 578888888888544321111 111111 23445555555665544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=172.90 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=168.5
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
..-..|+++++.++. ++..+. .+|+.|++.+|+++.. +. ..++|++|++++|+++... ..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsLP-----~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSLP-----VL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCccc-----Cc
Confidence 446678888887764 344333 4788888888887642 21 1367888888888887532 11
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
.++|+.|++++|.++. ++... .+|+.|++++|+++. ++. ..++|+.|++++|.+...+.
T Consensus 261 ---p~sL~~L~Ls~N~L~~-----Lp~lp---~~L~~L~Ls~N~Lt~-----LP~---~p~~L~~LdLS~N~L~~Lp~-- 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLTH-----LPALP---SGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 319 (788)
T ss_pred ---ccccceeeccCCchhh-----hhhch---hhcCEEECcCCcccc-----ccc---cccccceeECCCCccccCCC--
Confidence 3678888888887765 22221 457888888888752 222 23678888888887765321
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
....|+.|++++|.++.. +.+ ..+|+.|+|++|+++. ++.. ..+|+.|++++|.|+.
T Consensus 320 ------lp~~L~~L~Ls~N~L~~L--P~l-------p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 ------LPSELCKLWAYNNQLTSL--PTL-------PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred ------CcccccccccccCccccc--ccc-------ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 123577788888877641 111 1268888888888776 3321 3467778888887764
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
++.. ..+|+.|++++|.|+.. +.. .++|+.|++++|.++.. +.. ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~L-----P~l---~s~L~~LdLS~N~LssI-----P~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSL-----PVL---PSELKELMVSGNRLTSL-----PML---PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCC-----CCc---ccCCCEEEccCCcCCCC-----Ccc---hhhhhhhhhccC
Confidence 2221 24678888888877642 111 25678888888877642 111 135677788888
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 521 (597)
+|+.. ...+..+++|+.|++++|.+++..+..+..
T Consensus 433 qLt~L-----P~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRL-----PESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccccc-----ChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77643 223444577888888888877766665544
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=153.03 Aligned_cols=282 Identities=21% Similarity=0.255 Sum_probs=145.6
Q ss_pred hhCCCccEEEccCC-CCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHHHHHHHHHHcCCCccEEEeccC-CCChhhH
Q 007577 215 QSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGF 291 (597)
Q Consensus 215 ~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 291 (597)
.+|+++++|++.++ ++++.....++. .|+.|++|++..| .+|+..++.+++. |++|++|+++++ .|++.++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~---~C~~l~~l~L~~c~~iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLAR---YCRKLRHLNLHSCSSITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHH---hcchhhhhhhcccchhHHHHHHHHHHh---hhhHHHhhhccCchhhcCcc
Confidence 34444555544442 334433333332 2455555555553 3444444333332 455555555555 4444444
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHHHhhhcCccccceeeccCC-
Q 007577 292 TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN- 369 (597)
Q Consensus 292 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 369 (597)
+.+.+ .+..++.+.+.+|. +.+.+.+...-..+..+..+++..| .++++++..+..+.. .|+.|+.++|
T Consensus 235 ~~~~r---G~~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~----~lq~l~~s~~t 305 (483)
T KOG4341|consen 235 QALQR---GCKELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH----ALQVLCYSSCT 305 (483)
T ss_pred hHHhc---cchhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh----HhhhhcccCCC
Confidence 44443 23345555444442 1222233232334455555555454 456665554443322 5666666665
Q ss_pred CCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE
Q 007577 370 SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 448 (597)
.+++. .+...-.++++|+.|-++.| ++++.++..+.. +++.|+.+++.++....++ .+...-.+|+.|+.|
T Consensus 306 ~~~d~---~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r---n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 306 DITDE---VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR---NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVL 377 (483)
T ss_pred CCchH---HHHHHhcCCCceEEEeccccchhhhhhhhhhhc---CChhhhhhcccccceehhh--hHhhhccCCchhccC
Confidence 33332 12223345666777777666 566665544443 3566777777776544433 344444556777777
Q ss_pred ECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCC-ChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHH
Q 007577 449 DLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSF 523 (597)
Q Consensus 449 ~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l 523 (597)
.++.| .|+++|+..+...-.....|..+.+++|.. ++...+ -+..|++|+.+++.++ .++..++..+...+
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le----~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE----HLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----HHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 77766 456666666666555556677777777753 333222 2344567777777666 56666666665554
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-16 Score=152.78 Aligned_cols=302 Identities=21% Similarity=0.270 Sum_probs=220.6
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHHHHHHHHHHcCCCccEEEeccC-CCChhhHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNN-MIDYSGFTSLAE 296 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 296 (597)
.|++|.+.++.= .+...+......|+++++|.+.+| ++++.....+++. |++|++|++..| .+++..++.+.+
T Consensus 139 ~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~---C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 139 FLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY---CRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred cccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh---cchhhhhhhcccchhHHHHHHHHHH
Confidence 588888888632 233345555667999999999998 4788766666554 789999999995 788877776665
Q ss_pred HHhhCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHHHhhhcCccccceeeccCC-CCCh
Q 007577 297 ALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISA 373 (597)
Q Consensus 297 ~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 373 (597)
.|++|++|+++.|. ++..+++.+ ..+++.++.+.+.|| .++.+.+..+. ..+..+..+++.+| .+++
T Consensus 214 ---gC~kL~~lNlSwc~qi~~~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~----~~~~~i~~lnl~~c~~lTD 283 (483)
T KOG4341|consen 214 ---GCRKLKYLNLSWCPQISGNGVQAL---QRGCKELEKLSLKGCLELELEALLKAA----AYCLEILKLNLQHCNQLTD 283 (483)
T ss_pred ---hhhhHHHhhhccCchhhcCcchHH---hccchhhhhhhhcccccccHHHHHHHh----ccChHhhccchhhhccccc
Confidence 48999999999884 555555444 456777888888877 34444333332 34446788887776 5777
Q ss_pred hHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECc
Q 007577 374 KGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLA 451 (597)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls 451 (597)
.+...+. ..+..|+.|+.+++ ++++..+..+.+ ++.+|+.|-+++| ++++.+...++.. |+.|+.+++.
T Consensus 284 ~~~~~i~---~~c~~lq~l~~s~~t~~~d~~l~aLg~---~~~~L~~l~l~~c~~fsd~~ft~l~rn---~~~Le~l~~e 354 (483)
T KOG4341|consen 284 EDLWLIA---CGCHALQVLCYSSCTDITDEVLWALGQ---HCHNLQVLELSGCQQFSDRGFTMLGRN---CPHLERLDLE 354 (483)
T ss_pred hHHHHHh---hhhhHhhhhcccCCCCCchHHHHHHhc---CCCceEEEeccccchhhhhhhhhhhcC---Chhhhhhccc
Confidence 7544433 56788999999887 777764444433 4789999999999 5888887776544 7999999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCcc
Q 007577 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEA 529 (597)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~ 529 (597)
.+....++ .+.+.-.+|+.|++|.++.|. |++.+...+...-.....|..+.++++ .+++.....+..+ ++
T Consensus 355 ~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-----~~ 427 (483)
T KOG4341|consen 355 ECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-----RN 427 (483)
T ss_pred ccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-----cc
Confidence 99655443 455666779999999999996 888888888777677788999999999 5555555545443 77
Q ss_pred ccEEEccCC-CCChHHHHHHHHH
Q 007577 530 LTSIDLAFN-EIRDDGAFAIAQA 551 (597)
Q Consensus 530 L~~L~Ls~n-~i~~~~~~~l~~~ 551 (597)
|+.+++-++ +++..+...+.+.
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhh
Confidence 999999888 6777777777654
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-16 Score=173.25 Aligned_cols=267 Identities=17% Similarity=0.163 Sum_probs=154.9
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
..-..|+++++.++. ++..+. ++|+.|++++|+++.. +. ..++|++|++++|+++.. +..
T Consensus 201 ~~~~~LdLs~~~Lts-----LP~~l~--~~L~~L~L~~N~Lt~L-----P~---lp~~Lk~LdLs~N~LtsL-----P~l 260 (788)
T PRK15387 201 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSL-----PVL 260 (788)
T ss_pred CCCcEEEcCCCCCCc-----CCcchh--cCCCEEEccCCcCCCC-----CC---CCCCCcEEEecCCccCcc-----cCc
Confidence 345567777777653 222222 3577777777777642 21 136777777777777653 211
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
.++|+.|++++|.++ .++.. ...|+.|++++|.++..+. ..++|+.|++++|.+... +.
T Consensus 261 ---p~sL~~L~Ls~N~L~-----~Lp~l---p~~L~~L~Ls~N~Lt~LP~--------~p~~L~~LdLS~N~L~~L--p~ 319 (788)
T PRK15387 261 ---PPGLLELSIFSNPLT-----HLPAL---PSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASL--PA 319 (788)
T ss_pred ---ccccceeeccCCchh-----hhhhc---hhhcCEEECcCCccccccc--------cccccceeECCCCccccC--CC
Confidence 256777777777763 23321 2467777777777664321 235677777777776541 11
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+ ..+|+.|++++|.++. ++.. ..+|++|+|++|+|+. ++.. ..+|+.|++++|.|+.
T Consensus 320 l-------p~~L~~L~Ls~N~L~~-----LP~l---p~~Lq~LdLS~N~Ls~-----LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 320 L-------PSELCKLWAYNNQLTS-----LPTL---PSGLQELSVSDNQLAS-----LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred C-------cccccccccccCcccc-----cccc---ccccceEecCCCccCC-----CCCC---Ccccceehhhcccccc
Confidence 1 1257777777777765 3321 1367777777777764 2221 2467777777777664
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
++.. ..+|+.|++++|+++... .. .++|+.|++++|+++.... + ..+|+.|++++|
T Consensus 377 -----LP~l---~~~L~~LdLs~N~Lt~LP-----~l---~s~L~~LdLS~N~LssIP~--l------~~~L~~L~Ls~N 432 (788)
T PRK15387 377 -----LPAL---PSGLKELIVSGNRLTSLP-----VL---PSELKELMVSGNRLTSLPM--L------PSGLLSLSVYRN 432 (788)
T ss_pred -----Cccc---ccccceEEecCCcccCCC-----Cc---ccCCCEEEccCCcCCCCCc--c------hhhhhhhhhccC
Confidence 2221 145777777777765321 11 2467777777777764321 1 135677777777
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHH
Q 007577 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 550 (597)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~ 550 (597)
+|+.. +..+..+ +.|+.|+|++|.++...+..+..
T Consensus 433 qLt~L-P~sl~~L-----~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 433 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccccc-ChHHhhc-----cCCCeEECCCCCCCchHHHHHHH
Confidence 77643 2334433 56777777777777666665533
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-16 Score=180.11 Aligned_cols=199 Identities=18% Similarity=0.227 Sum_probs=105.0
Q ss_pred HHHhcCCCcEEEcCCCCCCH--HHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChh
Q 007577 157 FAKELRAFSSVDMSGRNFGD--EGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 233 (597)
.+..+++|+.|.+..+.+.. .....++..+..+ .+|+.|.+.++.+.. ++..+ ...+|++|++++|.+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~- 625 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK- 625 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-
Confidence 35566777777775543211 0000122223332 356667766665432 22112 23567777777776653
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCC-CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCC
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 312 (597)
+...+..+++|+.|+|+++. +.. ++. +..+++|++|++++|..- ..++..+..+++|+.|++++|
T Consensus 626 ----L~~~~~~l~~Lk~L~Ls~~~~l~~-----ip~-ls~l~~Le~L~L~~c~~L----~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 626 ----LWDGVHSLTGLRNIDLRGSKNLKE-----IPD-LSMATNLETLKLSDCSSL----VELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred ----cccccccCCCCCEEECCCCCCcCc-----CCc-cccCCcccEEEecCCCCc----cccchhhhccCCCCEEeCCCC
Confidence 33334456777888877654 222 211 344577778888776431 345566667777888888776
Q ss_pred C-CChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcE
Q 007577 313 Y-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (597)
Q Consensus 313 ~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 391 (597)
. +...+ ..+ ++++|+.|++++|..... ++ ....+|+.|++++|.+.. ++..+ .+++|++
T Consensus 692 ~~L~~Lp-----~~i-~l~sL~~L~Lsgc~~L~~----~p----~~~~nL~~L~L~~n~i~~-----lP~~~-~l~~L~~ 751 (1153)
T PLN03210 692 ENLEILP-----TGI-NLKSLYRLNLSGCSRLKS----FP----DISTNISWLDLDETAIEE-----FPSNL-RLENLDE 751 (1153)
T ss_pred CCcCccC-----CcC-CCCCCCEEeCCCCCCccc----cc----cccCCcCeeecCCCcccc-----ccccc-ccccccc
Confidence 3 32221 111 466777777777743211 11 112367777777776554 33222 3445555
Q ss_pred EEccC
Q 007577 392 INLYM 396 (597)
Q Consensus 392 L~Ls~ 396 (597)
|++.+
T Consensus 752 L~l~~ 756 (1153)
T PLN03210 752 LILCE 756 (1153)
T ss_pred ccccc
Confidence 55544
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-16 Score=152.70 Aligned_cols=382 Identities=19% Similarity=0.213 Sum_probs=203.3
Q ss_pred HHHHHHhc-CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC-CCCC
Q 007577 154 LNEFAKEL-RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-NPIG 231 (597)
Q Consensus 154 l~~~~~~~-~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~ 231 (597)
+.++-.++ +...+|+|..|.|+... ..+|..+++|+.|||++|.|+.++..+|.+. ++|.+|-+.+ |+|+
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNNKIT 129 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCC----hhhccchhhhceecccccchhhcChHhhhhh----HhhhHHHhhcCCchh
Confidence 33444455 44778999999887654 4567778999999999999988777776644 5566555544 9998
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHH-HHhhCCCccEEEcC
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLN 310 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~L~~L~L~ 310 (597)
+.....+.. +..++.|.+.-|++.-.-..++.+ +++|..|.+.+|.+ +.++. .+..+..++++.+.
T Consensus 130 ~l~k~~F~g----L~slqrLllNan~i~Cir~~al~d----L~~l~lLslyDn~~-----q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 130 DLPKGAFGG----LSSLQRLLLNANHINCIRQDALRD----LPSLSLLSLYDNKI-----QSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhhHhhh----HHHHHHHhcChhhhcchhHHHHHH----hhhcchhcccchhh-----hhhccccccchhccchHhhh
Confidence 876655554 478888999888887764444444 48899999988877 55555 45557788888877
Q ss_pred CCCC-ChHHHHHHH-------HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 311 GNYG-GALGANALA-------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 311 ~n~i-~~~~~~~l~-------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
.|.+ .+-....++ ..+....-..-..+.+.++.......+...+. .+..=-.+.|.+... .....
T Consensus 197 ~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e----sl~s~~~~~d~~d~~---cP~~c 269 (498)
T KOG4237|consen 197 QNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE----SLPSRLSSEDFPDSI---CPAKC 269 (498)
T ss_pred cCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH----hHHHhhccccCcCCc---ChHHH
Confidence 6652 111111111 11111111222222333332222222211111 011000111211111 12344
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
|+.+++|++|+|++|+|+...- .++.....+++|.|..|+|....-..|.. ...|+.|+|.+|+|+....-+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~----~aFe~~a~l~eL~L~~N~l~~v~~~~f~~----ls~L~tL~L~~N~it~~~~~a 341 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIED----GAFEGAAELQELYLTRNKLEFVSSGMFQG----LSGLKTLSLYDNQITTVAPGA 341 (498)
T ss_pred HhhcccceEeccCCCccchhhh----hhhcchhhhhhhhcCcchHHHHHHHhhhc----cccceeeeecCCeeEEEeccc
Confidence 6666666666666666665322 22333456666666666665543333322 366666666666665443322
Q ss_pred HHHHHhhCCCcCEEecCCCCCC-hhHHHHHHHHHhcC-----------CCccEEEccCCCCChHH---H-----------
Q 007577 463 LSEVLKFHGNINTLKLGWCQIG-ASGAEFVADMLRYN-----------NTISILDLRANGLRDEG---A----------- 516 (597)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~-----------~~L~~L~l~~n~i~~~~---~----------- 516 (597)
+. ....|.+|++-.|.+. +-...++.+-+++. ..++.+++++..+++.. .
T Consensus 342 F~----~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~c 417 (498)
T KOG4237|consen 342 FQ----TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPC 417 (498)
T ss_pred cc----ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCC
Confidence 22 2245666666544321 11122333322211 13445555554333211 1
Q ss_pred ----HHHHHHHhhcC-----------ccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 517 ----KCLAQSFKVVN-----------EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 517 ----~~l~~~l~~~n-----------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
.++....+.+| ..-.+|++.+|.++..... . ++ ++ .+|+++|+|+...-..|..+
T Consensus 418 P~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~-~---~~-----~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 418 PPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE-L---LR-----SL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH-H---Hh-----hh-hcccccCceehhhcccccch
Confidence 01111111122 2345778888888754333 2 11 26 78999999888887777777
Q ss_pred HHHH
Q 007577 582 KDLV 585 (597)
Q Consensus 582 ~~~~ 585 (597)
..+.
T Consensus 488 tql~ 491 (498)
T KOG4237|consen 488 TQLS 491 (498)
T ss_pred hhhh
Confidence 6554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-15 Score=161.92 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=15.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
+|+.|++++|+|+.. +..+ .++|++|++++|.++
T Consensus 200 ~L~~L~Ls~N~LtsL-----P~~l--~~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 200 QITTLILDNNELKSL-----PENL--QGNIKTLYANSNQLT 233 (754)
T ss_pred CCcEEEecCCCCCcC-----Chhh--ccCCCEEECCCCccc
Confidence 455555555555422 1111 134555555555554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-15 Score=163.99 Aligned_cols=258 Identities=21% Similarity=0.241 Sum_probs=152.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
+...|+++++.++.. +..+ .+.|+.|++++|.++.. +..+. ++|++|++++|+++. ++..+
T Consensus 179 ~~~~L~L~~~~LtsL-----P~~I--p~~L~~L~Ls~N~LtsL-----P~~l~--~nL~~L~Ls~N~Lts-----LP~~l 239 (754)
T PRK15370 179 NKTELRLKILGLTTI-----PACI--PEQITTLILDNNELKSL-----PENLQ--GNIKTLYANSNQLTS-----IPATL 239 (754)
T ss_pred CceEEEeCCCCcCcC-----Cccc--ccCCcEEEecCCCCCcC-----Chhhc--cCCCEEECCCCcccc-----CChhh
Confidence 567788887777643 2211 25688888888887753 22222 468888888887742 23322
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+|+.|+|++|.+...+. .+. .+|+.|++++|+++. ++..+. .+|+.|++++|.++.
T Consensus 240 --~~~L~~L~Ls~N~L~~LP~-----~l~--s~L~~L~Ls~N~L~~-----LP~~l~---~sL~~L~Ls~N~Lt~----- 297 (754)
T PRK15370 240 --PDTIQEMELSINRITELPE-----RLP--SALQSLDLFHNKISC-----LPENLP---EELRYLSVYDNSIRT----- 297 (754)
T ss_pred --hccccEEECcCCccCcCCh-----hHh--CCCCEEECcCCccCc-----cccccC---CCCcEEECCCCcccc-----
Confidence 2468888888887765432 121 367888888887764 222221 368888888887765
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (597)
++..+. ++|++|++++|.++. ++..+ .++|++|++++|.++.. +..+ +++|+.|++++|+++..
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~L-----P~~l--~~sL~~L~Ls~N~L~~L 361 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTSL-----PASL--PPELQVLDVSKNQITVL 361 (754)
T ss_pred Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCccccC-----Chhh--cCcccEEECCCCCCCcC
Confidence 332222 357777888877764 22222 25678888888877652 2222 26788888888877532
Q ss_pred HHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+..+ .++|++|++++|+++..... +. ..|+.|++++|++... +..+..... ..+.+..|++.+|
T Consensus 362 -----P~~l--p~~L~~LdLs~N~Lt~LP~~-l~------~sL~~LdLs~N~L~~L-P~sl~~~~~-~~~~l~~L~L~~N 425 (754)
T PRK15370 362 -----PETL--PPTITTLDVSRNALTNLPEN-LP------AALQIMQASRNNLVRL-PESLPHFRG-EGPQPTRIIVEYN 425 (754)
T ss_pred -----Chhh--cCCcCEEECCCCcCCCCCHh-HH------HHHHHHhhccCCcccC-chhHHHHhh-cCCCccEEEeeCC
Confidence 1111 25788888888877654322 21 2477777888877642 222222211 1255777888888
Q ss_pred CCChHHHHHHH
Q 007577 539 EIRDDGAFAIA 549 (597)
Q Consensus 539 ~i~~~~~~~l~ 549 (597)
.++......+.
T Consensus 426 pls~~tl~~L~ 436 (754)
T PRK15370 426 PFSERTIQNMQ 436 (754)
T ss_pred CccHHHHHHHH
Confidence 77765554443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-15 Score=171.18 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=179.7
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC-CChhHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCD 240 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~ 240 (597)
+.|+.|++.++.+.. ++..+ ...+|+.|++.+|.+.. +...+..+++|+.|+|+++. +... +
T Consensus 589 ~~Lr~L~~~~~~l~~-----lP~~f-~~~~L~~L~L~~s~l~~-----L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p- 651 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-----MPSNF-RPENLVKLQMQGSKLEK-----LWDGVHSLTGLRNIDLRGSKNLKEI-----P- 651 (1153)
T ss_pred cccEEEEecCCCCCC-----CCCcC-CccCCcEEECcCccccc-----cccccccCCCCCEEECCCCCCcCcC-----C-
Confidence 458899998886654 23333 35789999999998753 33445677899999998854 3332 2
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|+.|++++|.... .++..+.++++|+.|++++|..- ..++..+ .+++|+.|++++|....
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L----~~Lp~~i-~l~sL~~L~Lsgc~~L~---- 718 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENL----EILPTGI-NLKSLYRLNLSGCSRLK---- 718 (1153)
T ss_pred ccccCCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCc----CccCCcC-CCCCCCEEeCCCCCCcc----
Confidence 23456899999999886433 25566677789999999987421 2333332 57889999999885321
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChh--HHH-HHHHHHHcCCCCcEEEccCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAF-HVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~--~~~-~l~~~l~~~~~L~~L~Ls~n 397 (597)
.++. ...+|+.|++++|.+.. ++..+ .+++|+.|++.++..... ... ..+......++|+.|+|++|
T Consensus 719 ~~p~---~~~nL~~L~L~~n~i~~-----lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 719 SFPD---ISTNISWLDLDETAIEE-----FPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred cccc---ccCCcCeeecCCCcccc-----ccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 1111 23578888998887654 22111 234666666665431110 000 00111223456777777777
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCC-CChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEE
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNN-IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 476 (597)
..... ++..+..+++|++|++++|. +.. ++..+ .+++|+.|+|++|..-. .+.. ..++|++|
T Consensus 789 ~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~-----LP~~~-~L~sL~~L~Ls~c~~L~----~~p~---~~~nL~~L 851 (1153)
T PLN03210 789 PSLVE----LPSSIQNLHKLEHLEIENCINLET-----LPTGI-NLESLESLDLSGCSRLR----TFPD---ISTNISDL 851 (1153)
T ss_pred CCccc----cChhhhCCCCCCEEECCCCCCcCe-----eCCCC-CccccCEEECCCCCccc----cccc---cccccCEe
Confidence 43332 45556667777777777763 332 22211 34677777777763211 1111 12467777
Q ss_pred ecCCCCCChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 477 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
++++|.++.. ...+..+++|+.|++++| .+..... .+... +.|+.+++++|
T Consensus 852 ~Ls~n~i~~i-----P~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L-----~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEV-----PWWIEKFSNLSFLDMNGCNNLQRVSL-NISKL-----KHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccC-----hHHHhcCCCCCEEECCCCCCcCccCc-ccccc-----cCCCeeecCCC
Confidence 7777776543 223445577777777775 4443211 12221 55677777776
|
syringae 6; Provisional |
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.9e-14 Score=130.00 Aligned_cols=194 Identities=15% Similarity=0.245 Sum_probs=125.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~ 438 (597)
.|+.|||+...|+.. .+...++.|.+|+.|.|.++.++|. ++..+.++.+|+.|+|++| .++..+++.+
T Consensus 186 Rlq~lDLS~s~it~s---tl~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS---TLHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hhHHhhcchhheeHH---HHHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHH---
Confidence 577777777777665 3444567777888888888888776 5666667788888888876 5776665555
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEEccCC-CCChHH
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLRAN-GLRDEG 515 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~ 515 (597)
+.+|+.|.+|+|+.|.+..+.+..+...+. ++|+.|+++|+. +... .+..+...|++|.+||+++| .+++.-
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~s---h~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKS---HLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhh---HHHHHHHhCCceeeeccccccccCchH
Confidence 455788888888888776666665554444 678888888874 3222 45555667888888888877 666654
Q ss_pred HHHHHHHHhhcCccccEEEccCC-CCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 516 AKCLAQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 516 ~~~l~~~l~~~n~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
...+.+. +.|++|.++.| .|.......+. ..+++.+||+.|+ ..+-..+.+..
T Consensus 331 ~~~~~kf-----~~L~~lSlsRCY~i~p~~~~~l~------s~psl~yLdv~g~-vsdt~mel~~e 384 (419)
T KOG2120|consen 331 FQEFFKF-----NYLQHLSLSRCYDIIPETLLELN------SKPSLVYLDVFGC-VSDTTMELLKE 384 (419)
T ss_pred HHHHHhc-----chheeeehhhhcCCChHHeeeec------cCcceEEEEeccc-cCchHHHHHHH
Confidence 4555444 56888888888 44433222222 2245888888776 33333344433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-15 Score=147.08 Aligned_cols=279 Identities=22% Similarity=0.205 Sum_probs=143.1
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCC-CCCChHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG-NYGGALGANALAK 324 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~ 324 (597)
+....++|..|+|+.....+|..+ ++|+.|||++|.|+..+ +++|..++.|.+|-+.+ |+|++... .
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l----~~LRrLdLS~N~Is~I~----p~AF~GL~~l~~Lvlyg~NkI~~l~k----~ 134 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL----HRLRRLDLSKNNISFIA----PDAFKGLASLLSLVLYGNNKITDLPK----G 134 (498)
T ss_pred CcceEEEeccCCcccCChhhccch----hhhceecccccchhhcC----hHhhhhhHhhhHHHhhcCCchhhhhh----h
Confidence 556777888888877655444444 77888888888775332 44555566666665555 67776655 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH-HHHcCCCCcEEEccCCC-CCcH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMND-IGDE 402 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~-l~~~ 402 (597)
.|.++..++.|.+.-|++.-.-.+.+ ..++++..|.+-+|.+.. ++. .+..+..++.+.+..|. +.+-
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al-----~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDAL-----RDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHH-----HHhhhcchhcccchhhhh-----hccccccchhccchHhhhcCcccccc
Confidence 34566667777776666543222222 233356666666665544 333 45556667777776664 3332
Q ss_pred HHHHHHHHHhc-------CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEE--EC-cCCCCCHHHHHHHHHHHhhCCC
Q 007577 403 GAEKIADALKQ-------NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL--DL-AYNPIGADGAKALSEVLKFHGN 472 (597)
Q Consensus 403 ~~~~l~~~l~~-------~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L--~L-s~n~i~~~~~~~l~~~l~~~~~ 472 (597)
.+..+.+.+.. ........+.+.++..+....+... ++.+ .+ +.+...... -...++.+++
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~------~esl~s~~~~~d~~d~~c---P~~cf~~L~~ 275 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS------LESLPSRLSSEDFPDSIC---PAKCFKKLPN 275 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh------HHhHHHhhccccCcCCcC---hHHHHhhccc
Confidence 22222222111 1111222222333333222222211 1111 11 111111111 1122445566
Q ss_pred cCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHH
Q 007577 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (597)
Q Consensus 473 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l 552 (597)
|++|++++|+|+.....+|..+ ..+++|.+..|+|....-..|... ..|+.|+|.+|+|+...+.+|....
T Consensus 276 L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~~v~~~~f~~l-----s~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLEFVSSGMFQGL-----SGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred ceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHHHHHHHhhhcc-----ccceeeeecCCeeEEEecccccccc
Confidence 6666666666666655555544 556666666666554433333322 4566666666666666665555442
Q ss_pred HhCCCCceeEEEcccCcc
Q 007577 553 KANEDVAVTSLNLANNFL 570 (597)
Q Consensus 553 ~~~~~~~L~~L~L~~N~i 570 (597)
. |.+|+|-.|.+
T Consensus 347 ~------l~~l~l~~Np~ 358 (498)
T KOG4237|consen 347 S------LSTLNLLSNPF 358 (498)
T ss_pred e------eeeeehccCcc
Confidence 2 66666666554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=121.16 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=81.1
Q ss_pred CCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHH
Q 007577 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIADA 410 (597)
Q Consensus 332 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 410 (597)
|++|||+...|+...+..+.. ++.+|+.|.+.++.+.+ .+...+.+..+|+.|+|+.+ .++..++..+
T Consensus 187 lq~lDLS~s~it~stl~~iLs----~C~kLk~lSlEg~~LdD----~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--- 255 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILS----QCSKLKNLSLEGLRLDD----PIVNTIAKNSNLVRLNLSMCSGFTENALQLL--- 255 (419)
T ss_pred hHHhhcchhheeHHHHHHHHH----HHHhhhhccccccccCc----HHHHHHhccccceeeccccccccchhHHHHH---
Confidence 455555555554443333332 22345555555555555 24444445555555555554 4444433332
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHH
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAE 489 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 489 (597)
+.+++.|..|+|+.|.++.+.+..+...++ ++|+.|+|+++.= ..+...+.-..+.|++|.+|+|++|. +++....
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rr-nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRR-NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHh-hhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 223455555555555554444433333222 4455555555410 01111233333445555555555543 4332222
Q ss_pred HHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 490 FVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 490 ~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
.+. +.+.|++|.++.| .|.......+... ++|.+||+.++
T Consensus 333 ~~~----kf~~L~~lSlsRCY~i~p~~~~~l~s~-----psl~yLdv~g~ 373 (419)
T KOG2120|consen 333 EFF----KFNYLQHLSLSRCYDIIPETLLELNSK-----PSLVYLDVFGC 373 (419)
T ss_pred HHH----hcchheeeehhhhcCCChHHeeeeccC-----cceEEEEeccc
Confidence 222 2355555555555 3333333333332 55555555554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-14 Score=140.17 Aligned_cols=230 Identities=19% Similarity=0.148 Sum_probs=97.4
Q ss_pred HHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC
Q 007577 177 EGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV 256 (597)
Q Consensus 177 ~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~ 256 (597)
.|+..++.-=+++++|+++.|.++.+...+.. +....|++++.||||+|-+.. +..++.....+++|+.|+|+.|
T Consensus 108 iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 108 IGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred ecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccccc
Confidence 33333443333345555555555544433322 233445555555555554432 2334444444555555555555
Q ss_pred CCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEE
Q 007577 257 DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLREL 335 (597)
Q Consensus 257 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L 335 (597)
++....-..... ..++|+.|.|+.|.++...+..+. ..+|+|+.|+|..|. +... .. .......|++|
T Consensus 183 rl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~---~~--~~~i~~~L~~L 251 (505)
T KOG3207|consen 183 RLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWIL---LTFPSLEVLYLEANEIILIK---AT--STKILQTLQEL 251 (505)
T ss_pred cccCCccccchh---hhhhhheEEeccCCCCHHHHHHHH---HhCCcHHHhhhhccccccee---cc--hhhhhhHHhhc
Confidence 432211001111 124455555555555543333322 234555555555552 1110 00 01123355555
Q ss_pred EccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH--HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc
Q 007577 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH--VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413 (597)
Q Consensus 336 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 413 (597)
+|++|++-+...-... ..++.|..|+++.|++++..... ..+-...+++|++|++..|+|.+- . ....+..
T Consensus 252 dLs~N~li~~~~~~~~----~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w--~-sl~~l~~ 324 (505)
T KOG3207|consen 252 DLSNNNLIDFDQGYKV----GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW--R-SLNHLRT 324 (505)
T ss_pred cccCCccccccccccc----ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc--c-ccchhhc
Confidence 5555554332110010 23345555555555554421000 001123355666666666665442 0 1112333
Q ss_pred CCCccEEEccCCCCCh
Q 007577 414 NRTITTIDLGGNNIHS 429 (597)
Q Consensus 414 ~~~L~~L~L~~n~l~~ 429 (597)
+++|++|.+..|.++.
T Consensus 325 l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNK 340 (505)
T ss_pred cchhhhhhcccccccc
Confidence 4555666655555543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-13 Score=134.95 Aligned_cols=234 Identities=17% Similarity=0.127 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEcc
Q 007577 147 FRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226 (597)
Q Consensus 147 ~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls 226 (597)
+....+.+.+--+++..|+++.|+++.+.+.+.. .....|++++.|||++|-+.. +..+.+....+|+|+.|+|+
T Consensus 106 E~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~n--w~~v~~i~eqLp~Le~LNls 180 (505)
T KOG3207|consen 106 EFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHN--WFPVLKIAEQLPSLENLNLS 180 (505)
T ss_pred EEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHh--HHHHHHHHHhcccchhcccc
Confidence 3444555555566788899999999988776543 345568999999999997764 66777888899999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCcc
Q 007577 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIR 305 (597)
Q Consensus 227 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~ 305 (597)
.|.+..-.-..... ..++|+.|.|+.|+++.. .+...+..+|+|+.|++..|. +.. .... ..-+..|+
T Consensus 181 ~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~---~~~~--~~i~~~L~ 249 (505)
T KOG3207|consen 181 SNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILI---KATS--TKILQTLQ 249 (505)
T ss_pred cccccCCccccchh---hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccce---ecch--hhhhhHHh
Confidence 99875321111111 248899999999999854 566666678999999999994 321 1111 12357899
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHH-hhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-GLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 306 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
+|+|++|.+-+.+.. .....++.|..|+++.|++.+........ ......++|+.|++..|++.+- .....+.
T Consensus 250 ~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w---~sl~~l~ 323 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW---RSLNHLR 323 (505)
T ss_pred hccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc---cccchhh
Confidence 999999987654422 33567899999999999887643222100 0113456999999999998762 1224466
Q ss_pred cCCCCcEEEccCCCCCcH
Q 007577 385 NCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~ 402 (597)
.+++|++|.+..|.++.+
T Consensus 324 ~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 324 TLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccchhhhhhccccccccc
Confidence 778899999888877654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-13 Score=118.40 Aligned_cols=198 Identities=17% Similarity=0.207 Sum_probs=136.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.+..|.|++|+++. ++..+..+.+|+.|++++|+|.+ ++..+..++.|++|+++-|++.. +++.+
T Consensus 34 ~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprgf 98 (264)
T KOG0617|consen 34 NITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRGF 98 (264)
T ss_pred hhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Ccccc
Confidence 56777788888776 66777778888888888888765 66777778888888888776544 56667
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
+.+|.|+.|||.+|.+.... ++.-+-..+.|+.|.+++|.+.- +..-+.+.++|+.|.+++|.+-.. +..+
T Consensus 99 gs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~l-pkei 169 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLSL-PKEI 169 (264)
T ss_pred CCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhhC-cHHH
Confidence 77788888888888776532 22222333578888888887633 333445568999999999866543 4456
Q ss_pred HHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhhhhh
Q 007577 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSE 590 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~l~~ 590 (597)
... ..|++|.+++|+++. .+..+++.-.- .+-+.+.+.+|.......+.|.-+.++++++..
T Consensus 170 g~l-----t~lrelhiqgnrl~v-lppel~~l~l~---~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yir 231 (264)
T KOG0617|consen 170 GDL-----TRLRELHIQGNRLTV-LPPELANLDLV---GNKQVMRMEENPWVNPIAEQFLLGISHVIDYIR 231 (264)
T ss_pred HHH-----HHHHHHhcccceeee-cChhhhhhhhh---hhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHh
Confidence 665 559999999999884 34444433110 013455667888877777777777777777654
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.1e-13 Score=113.54 Aligned_cols=155 Identities=21% Similarity=0.277 Sum_probs=93.1
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
.+++.|.|++|+++.. +..+..+.+|+.|++++|+| +.++..+..+++|++|+++-|.+. .++.+
T Consensus 33 s~ITrLtLSHNKl~~v-----ppnia~l~nlevln~~nnqi-----e~lp~~issl~klr~lnvgmnrl~-----~lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVV-----PPNIAELKNLEVLNLSNNQI-----EELPTSISSLPKLRILNVGMNRLN-----ILPRG 97 (264)
T ss_pred hhhhhhhcccCceeec-----CCcHHHhhhhhhhhcccchh-----hhcChhhhhchhhhheecchhhhh-----cCccc
Confidence 4444455555554431 11122225555555555555 344555555566666666555432 22345
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (597)
|+.+|.|+.||+++|++.+..++.-+-. +..|+.|+|++|.+.- ++.-++++++|+.|.+..|++-.
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~----m~tlralyl~dndfe~-----lp~dvg~lt~lqil~lrdndll~---- 164 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFY----MTTLRALYLGDNDFEI-----LPPDVGKLTNLQILSLRDNDLLS---- 164 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhH----HHHHHHHHhcCCCccc-----CChhhhhhcceeEEeeccCchhh----
Confidence 6666777777777776655433222211 2257778888887665 67777888888888888886644
Q ss_pred HHHHHHhcCCCccEEEccCCCCCh
Q 007577 406 KIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
++..++.+..|++|.+.+|+++-
T Consensus 165 -lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 165 -LPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred -CcHHHHHHHHHHHHhcccceeee
Confidence 66667777888888888888765
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-10 Score=103.68 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=22.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+|+.|++++|.|+. + +.+..+++|++|++++|.|++. ...+ ..+++|++|++++|+|.+..- + ..
T Consensus 43 ~L~~L~Ls~N~I~~-----l-~~l~~L~~L~~L~L~~N~I~~i-----~~~l~~~lp~L~~L~L~~N~I~~l~~--l-~~ 108 (175)
T PF14580_consen 43 KLEVLDLSNNQITK-----L-EGLPGLPRLKTLDLSNNRISSI-----SEGLDKNLPNLQELYLSNNKISDLNE--L-EP 108 (175)
T ss_dssp T--EEE-TTS--S--------TT----TT--EEE--SS---S------CHHHHHH-TT--EEE-TTS---SCCC--C-GG
T ss_pred CCCEEECCCCCCcc-----c-cCccChhhhhhcccCCCCCCcc-----ccchHHhCCcCCEEECcCCcCCChHH--h-HH
Confidence 45555555555554 1 2234455555555555555442 1111 123555555555555443211 1 11
Q ss_pred hhcCCCcCEEECcCCCCC
Q 007577 439 LKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~ 456 (597)
+..+++|+.|+|.+|++.
T Consensus 109 L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 109 LSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGG-TT--EEE-TT-GGG
T ss_pred HHcCCCcceeeccCCccc
Confidence 333455555555555544
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-10 Score=106.73 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=101.0
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
..+.|++|||++|.|+. +-..++-.|.++.|++++|.|...+- ++. +++|+.|||++|.++.. .
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La~----L~~L~~LDLS~N~Ls~~-----~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LAE----LPQLQLLDLSGNLLAEC-----V 345 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hhh----cccceEeecccchhHhh-----h
Confidence 34567888888887764 33445556788888888888876432 333 48888888888876542 2
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHHHHhhcCccccEEEccCCCCC--
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG-AKCLAQSFKVVNEALTSIDLAFNEIR-- 541 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~n~~L~~L~Ls~n~i~-- 541 (597)
..-..+.++++|.|++|.|.+. .++.+..+|..||+++|+|.... +..++.. |.|+.|.|.+|.+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS 414 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence 2223356889999998887543 34455578999999999887643 3334443 77999999999765
Q ss_pred -hHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 542 -DDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 542 -~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+.-...+..+-. .-.++.|.+-.-++.
T Consensus 415 vdYRTKVLa~FGE-----RaSE~~LD~~~~~~~ 442 (490)
T KOG1259|consen 415 VDYRTKVLARFGE-----RASEISLDNEPGNQQ 442 (490)
T ss_pred chHHHHHHHHHhh-----hhhheecCCCCcchh
Confidence 333334443322 134666666544433
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-10 Score=101.32 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=40.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHH-cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIK-NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++++|+|.+|.|+. + +.+. .+.+|+.|+|++|.|+.. ..+..++.|++|++++|+|++.+. .+.
T Consensus 20 ~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l------~~l~~L~~L~~L~L~~N~I~~i~~-~l~-- 84 (175)
T PF14580_consen 20 KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKL------EGLPGLPRLKTLDLSNNRISSISE-GLD-- 84 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHH--
T ss_pred cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCccc------cCccChhhhhhcccCCCCCCcccc-chH--
Confidence 56677777776665 2 2233 356777777777777652 234446777777777777766321 111
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
..+|+|++|++++|+|.+... + ..+..+++|++|++.+|.+... ..+-...+..+|+|+.||-.
T Consensus 85 -~~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 85 -KNLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -HH-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred -HhCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 234777777777776654211 1 2334456777777777766543 12222334455666666643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-09 Score=102.54 Aligned_cols=218 Identities=21% Similarity=0.173 Sum_probs=113.8
Q ss_pred HHHHHHcCCCccEEEeccCC--CChhhH--HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCC
Q 007577 266 IAELLKNNSILRVLELNNNM--IDYSGF--TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341 (597)
Q Consensus 266 l~~~l~~~~~L~~L~Ls~n~--i~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 341 (597)
++..+.-+..|..|-+++.. |....+ ..++-.+....+|+.+.++.|.-..+ ......-|.|+.+.+.+..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-----~~~~~~kptl~t~~v~~s~ 248 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-----VDIELLKPTLQTICVHNTT 248 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-----eceeecCchhheeeeeccc
Confidence 45555556778888887652 222111 11111122245677777776642211 1111234567777666554
Q ss_pred CChHHH----HHHHHhh--------------hcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHH
Q 007577 342 IGDEGI----RALMSGL--------------SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403 (597)
Q Consensus 342 i~~~~~----~~l~~~l--------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 403 (597)
+.+... ..+...+ ......|++|||++|.|+. +.+.++-.|.++.|++++|.|...
T Consensus 249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v- 322 (490)
T KOG1259|consen 249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTV- 322 (490)
T ss_pred ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeee-
Confidence 432110 0000000 0111246777777777666 556666677777777777766642
Q ss_pred HHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCC
Q 007577 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 404 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (597)
+.+..+++|++|||++|.++.. ..+-.++-++++|.|++|.|.+. ..+..+-+|..|++++|+|
T Consensus 323 -----~nLa~L~~L~~LDLS~N~Ls~~-----~Gwh~KLGNIKtL~La~N~iE~L------SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 323 -----QNLAELPQLQLLDLSGNLLAEC-----VGWHLKLGNIKTLKLAQNKIETL------SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred -----hhhhhcccceEeecccchhHhh-----hhhHhhhcCEeeeehhhhhHhhh------hhhHhhhhheeccccccch
Confidence 2244567777777777766542 22222335677777777765332 1223334677777777776
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 484 GASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
..... ...+.+.|-|+++.+.+|.+..
T Consensus 387 e~lde---V~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 387 EELDE---VNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhHHH---hcccccccHHHHHhhcCCCccc
Confidence 54321 1234445667777777776553
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=102.45 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=25.7
Q ss_pred CccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC-CCChHHHH
Q 007577 500 TISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN-EIRDDGAF 546 (597)
Q Consensus 500 ~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n-~i~~~~~~ 546 (597)
.++.|+++.+ ..++..+......+ .+++.+++.++ .++.....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~----~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSC----SNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred ccceEecccCccccccchHHHhhhh----hccccCCccCcccccchhhh
Confidence 3777787777 45665555554421 45777777777 44544433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=97.61 Aligned_cols=239 Identities=23% Similarity=0.273 Sum_probs=134.1
Q ss_pred hCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCCCEEEccCC--CCChHHHHHHHHhhhcCccccceeeccCCC-CChhH
Q 007577 300 ENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGN--SIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKG 375 (597)
Q Consensus 300 ~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 375 (597)
.++.|+.|.+.++. +++.. +......++.|++|+++++ .+...+..... +...+.+|+.|+++.+. +++.+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLL--LLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhh--hhhhcCCcCccchhhhhccCchh
Confidence 37888888888774 44433 3344567888999998873 22222211111 22344678888888887 77765
Q ss_pred HHHHHHHHHcCCCCcEEEccCCC-CCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007577 376 AFHVAEYIKNCKSLLWINLYMND-IGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN 453 (597)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (597)
+..+. ..|++|++|.+.+|. +++.|+..+... ++.|++|++++| .+++.+...+ ..+|++|+.|.+...
T Consensus 261 l~~l~---~~c~~L~~L~l~~c~~lt~~gl~~i~~~---~~~L~~L~l~~c~~~~d~~l~~~---~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 261 LSALA---SRCPNLETLSLSNCSNLTDEGLVSIAER---CPSLRELDLSGCHGLTDSGLEAL---LKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHH---hhCCCcceEccCCCCccchhHHHHHHHh---cCcccEEeeecCccchHHHHHHH---HHhCcchhhhhhhhc
Confidence 55444 338888888877775 788877776654 577888888888 4445555555 333777776655443
Q ss_pred C----CCHHHHHHHH---------HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHH
Q 007577 454 P----IGADGAKALS---------EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCL 519 (597)
Q Consensus 454 ~----i~~~~~~~l~---------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l 519 (597)
. +++.++..+. -.+..+++++.+.+..+.+++.+. .+.+.+| .++ .+....
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------------~~~l~gc~~l~-~~l~~~ 396 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL--------------ELSLRGCPNLT-ESLELR 396 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch--------------HHHhcCCcccc-hHHHHH
Confidence 2 3333222111 112234444444444444322221 1222222 122 222222
Q ss_pred HHHHhhcCccccEEEccCC-CCChHHHHHHHHHHHhCCCCceeEEEcccCcc-chhhHH
Q 007577 520 AQSFKVVNEALTSIDLAFN-EIRDDGAFAIAQALKANEDVAVTSLNLANNFL-TKFGQS 576 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i-~~~~~~ 576 (597)
... ...++.|+++.+ ..++......... + ..+..+++.++.. +..+..
T Consensus 397 ~~~----~~~l~~L~l~~~~~~t~~~l~~~~~~---~--~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 397 LCR----SDSLRVLNLSDCRLVTDKGLRCLADS---C--SNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred hcc----CCccceEecccCccccccchHHHhhh---h--hccccCCccCcccccchhhh
Confidence 111 123899999999 4677777666543 1 2378888888644 434433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.7e-08 Score=103.90 Aligned_cols=150 Identities=29% Similarity=0.355 Sum_probs=77.5
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhh
Q 007577 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354 (597)
Q Consensus 275 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 354 (597)
+|+.|++++|.+ ..++..+..++.|+.|++++|.+.+.+. .....+.|+.|++++|.+.+.....
T Consensus 141 nL~~L~l~~N~i-----~~l~~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~~~L~~L~ls~N~i~~l~~~~----- 205 (394)
T COG4886 141 NLKELDLSDNKI-----ESLPSPLRNLPNLKNLDLSFNDLSDLPK-----LLSNLSNLNNLDLSGNKISDLPPEI----- 205 (394)
T ss_pred hcccccccccch-----hhhhhhhhccccccccccCCchhhhhhh-----hhhhhhhhhheeccCCccccCchhh-----
Confidence 455555555555 2222334445555555555555544332 1114455666666666655421110
Q ss_pred hcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 355 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
.....|++|++++|.+.. ....+..+.++..|.+.+|.+.+ +...+..++.+++|++++|.+++...
T Consensus 206 -~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~-----~~~~~~~l~~l~~L~~s~n~i~~i~~-- 272 (394)
T COG4886 206 -ELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLED-----LPESIGNLSNLETLDLSNNQISSISS-- 272 (394)
T ss_pred -hhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeee-----ccchhccccccceecccccccccccc--
Confidence 011146666666664222 33445566666666666666554 12334445667777777776666322
Q ss_pred HHHHhhcCCCcCEEECcCCCCC
Q 007577 435 IARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 435 l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
+....+++.|++++|.+.
T Consensus 273 ----~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 273 ----LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----ccccCccCEEeccCcccc
Confidence 333466777777776554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-10 Score=112.84 Aligned_cols=184 Identities=23% Similarity=0.269 Sum_probs=81.7
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCC
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 443 (597)
.|++.|++.. ++..+..+..|+.+.|+.|.+.. ++.++.++..|.+|+|+.|+++. ++..++.|+
T Consensus 80 aDlsrNR~~e-----lp~~~~~f~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----lp~~lC~lp 144 (722)
T KOG0532|consen 80 ADLSRNRFSE-----LPEEACAFVSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----LPDGLCDLP 144 (722)
T ss_pred hhcccccccc-----CchHHHHHHHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----CChhhhcCc
Confidence 4444444444 33333444444444444444432 33334444444555555544433 233333333
Q ss_pred CcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHH
Q 007577 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523 (597)
Q Consensus 444 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l 523 (597)
|+.|-+++|+++. +...++...+|..|+.+.|++... ..-+.+...|+.|.++.|++.+.. ..++ .+
T Consensus 145 -Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~sl-----psql~~l~slr~l~vrRn~l~~lp-~El~-~L 211 (722)
T KOG0532|consen 145 -LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQSL-----PSQLGYLTSLRDLNVRRNHLEDLP-EELC-SL 211 (722)
T ss_pred -ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhhc-----hHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CC
Confidence 4555555554432 112222234455555555554222 112222345555555555544431 1222 11
Q ss_pred hhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHHHHhh
Q 007577 524 KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYE 587 (597)
Q Consensus 524 ~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~~~~~ 587 (597)
.|..||+|.|+|+. .+..|.++ ..|++|-|.+|.+.....+.+.+++-++++
T Consensus 212 -----pLi~lDfScNkis~-iPv~fr~m------~~Lq~l~LenNPLqSPPAqIC~kGkVHIFK 263 (722)
T KOG0532|consen 212 -----PLIRLDFSCNKISY-LPVDFRKM------RHLQVLQLENNPLQSPPAQICEKGKVHIFK 263 (722)
T ss_pred -----ceeeeecccCceee-cchhhhhh------hhheeeeeccCCCCCChHHHHhccceeeee
Confidence 25566666666552 33344333 126666666666666666665555444443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-08 Score=104.24 Aligned_cols=196 Identities=26% Similarity=0.310 Sum_probs=115.3
Q ss_pred cEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCChHHHHHHHHhhh
Q 007577 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLS 355 (597)
Q Consensus 277 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~ 355 (597)
..+++..+.+... ...+...+.++.|++.+|.+++.... .... ++|+.|++++|.+.... ..+
T Consensus 96 ~~l~~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~i~~i~~~-----~~~~~~nL~~L~l~~N~i~~l~-----~~~- 159 (394)
T COG4886 96 PSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPPL-----IGLLKSNLKELDLSDNKIESLP-----SPL- 159 (394)
T ss_pred ceeeccccccccC-----chhhhcccceeEEecCCcccccCccc-----cccchhhcccccccccchhhhh-----hhh-
Confidence 3577777766211 11222346788888888877665431 2233 26788888888776531 111
Q ss_pred cCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (597)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 435 (597)
..+++|+.|++++|.+++ ++......++|+.|++++|++.+ ++........|++|.+++|.+.. .
T Consensus 160 ~~l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~ 224 (394)
T COG4886 160 RNLPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----L 224 (394)
T ss_pred hccccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----c
Confidence 244577888888887777 45444466777788888877766 33322233457777777774221 2
Q ss_pred HHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
...+.+..++..+.+.+|++.+. ...+...++++.|++++|++++... +....+++.|++++|.+...
T Consensus 225 ~~~~~~~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 225 LSSLSNLKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhhhhcccccccccCCceeeec-----cchhccccccceecccccccccccc------ccccCccCEEeccCcccccc
Confidence 22234446666777777765441 2333445667777777777765432 33346777777777766543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-09 Score=112.55 Aligned_cols=151 Identities=24% Similarity=0.237 Sum_probs=75.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+..+.++..++.+...... . ..+..++.+++..|.+.. +...+..+.+|+.|++.+|.|... ...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~-~----~~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~ 113 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDL-V----ESLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENL 113 (414)
T ss_pred chhhhhcchhccccchhhh-H----HHhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccc
Confidence 4455555555544332211 1 223556666666665543 223334456677777777766542 111
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.|++. ..+..++.|+.|++++|.|.+ ...+..+..|+.+++++|.+......
T Consensus 114 l~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~------~~~~~~l~~L~~l~l~~n~i~~ie~~- 180 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISD------ISGLESLKSLKLLDLSYNRIVDIEND- 180 (414)
T ss_pred hhhhhcchheeccccccccc------cchhhccchhhheeccCcchh------ccCCccchhhhcccCCcchhhhhhhh-
Confidence 33456667777777666653 112223456666666666632 11222245566666666655443221
Q ss_pred HHHHhhcCCCCCEEEccCCCCC
Q 007577 322 LAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
. +..+.+++.+++.+|.+.
T Consensus 181 --~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 181 --E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred --h-hhhccchHHHhccCCchh
Confidence 0 234455555556555543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=89.97 Aligned_cols=220 Identities=18% Similarity=0.191 Sum_probs=110.6
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+..++.++|.+|.|++ +..++..+.++|.|+.|+|+.|.+... +..++ ....+|+.|-|.+..+...... .
T Consensus 70 ~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp---~p~~nl~~lVLNgT~L~w~~~~---s 140 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP---LPLKNLRVLVLNGTGLSWTQST---S 140 (418)
T ss_pred hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---ccccceEEEEEcCCCCChhhhh---h
Confidence 3445555555555544 444555555555555555555554321 11111 1234566666666555443332 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+..+|.+++|+++.|++.......- ......+.+++|.+..|.. .-+......-+.+|++..+-+..|.+.+...
T Consensus 141 ~l~~lP~vtelHmS~N~~rq~n~Dd~--c~e~~s~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 141 SLDDLPKVTELHMSDNSLRQLNLDDN--CIEDWSTEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred hhhcchhhhhhhhccchhhhhccccc--cccccchhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 34456666666666663221100000 0001122455565555532 2222333444567888888888887766422
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH--HHHHhhCCCcCEEecCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL--SEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l~~~~~L~~L~L~~n~ 482 (597)
+ +.....+.+..|+|+.++|.+... + ..+..++.|..|.++++++.+.--..- .-.+..+++++.|+=+ .
T Consensus 217 e---k~se~~p~~~~LnL~~~~idswas--v-D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--k 288 (418)
T KOG2982|consen 217 E---KGSEPFPSLSCLNLGANNIDSWAS--V-DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--K 288 (418)
T ss_pred c---ccCCCCCcchhhhhcccccccHHH--H-HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--c
Confidence 2 223345667778888888876432 2 234556888888888887765311100 0112335666666543 5
Q ss_pred CCh
Q 007577 483 IGA 485 (597)
Q Consensus 483 i~~ 485 (597)
|+.
T Consensus 289 Iss 291 (418)
T KOG2982|consen 289 ISS 291 (418)
T ss_pred cch
Confidence 543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-09 Score=110.67 Aligned_cols=248 Identities=24% Similarity=0.256 Sum_probs=157.9
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.+..++.+.++.|.+.. +...+..+++|+.|++.+|+|... ...+..+++|++|++++|.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i------ 133 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKL------ 133 (414)
T ss_pred HhHhHHhhccchhhhhh-----hhcccccccceeeeeccccchhhc-----ccchhhhhcchheeccccccccc------
Confidence 34555566677666654 334456678999999999987542 22255678899999999999875
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+..++.|+.|++++|.|++.. .+..++.|+.+++++|++...... . +..+..++.+++.+|.+.....
T Consensus 134 ~~l~~l~~L~~L~l~~N~i~~~~------~~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i~~ 203 (414)
T KOG0531|consen 134 EGLSTLTLLKELNLSGNLISDIS------GLESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREIEG 203 (414)
T ss_pred cchhhccchhhheeccCcchhcc------CCccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcccc
Confidence 34445577999999999988742 222357899999999998543221 1 3567899999999998765432
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcc--ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~--~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
+..+..+..+++..|.+.... .+ .... .|+.+++++|.+.. +...+..++.+..|++..|
T Consensus 204 ------~~~~~~l~~~~l~~n~i~~~~--~l-----~~~~~~~L~~l~l~~n~i~~-----~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 204 ------LDLLKKLVLLSLLDNKISKLE--GL-----NELVMLHLRELYLSGNRISR-----SPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred ------hHHHHHHHHhhcccccceecc--Cc-----ccchhHHHHHHhcccCcccc-----ccccccccccccccchhhc
Confidence 223334445577777765421 01 0111 37888899988876 2245567788888888888
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
.+... ..+...+.+..+....+.+.......-.......+.++.+.+.+|.+..
T Consensus 266 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 266 RISNL------EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccc------ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 77652 1122345555666666665532111111113344777778887776544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.6e-08 Score=90.68 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG-AKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~-~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
...+..+++..+-+..|.+.+...+. .....+.+-.|+++.|+|.+.. +..+..+ +.|..|.+++|.+.+.
T Consensus 193 ~l~r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~~idswasvD~Ln~f-----~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 193 KLSRIFPNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGANNIDSWASVDALNGF-----PQLVDLRVSENPLSDP 264 (418)
T ss_pred hHHhhcccchheeeecCcccchhhcc---cCCCCCcchhhhhcccccccHHHHHHHcCC-----chhheeeccCCccccc
Confidence 33345678888888888776543322 2223466778888888888743 3444444 7799999999988764
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-08 Score=105.30 Aligned_cols=174 Identities=23% Similarity=0.272 Sum_probs=102.8
Q ss_pred cCCCcEEEcCCCCCCH-HHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhC----------CCccEEEccCCC
Q 007577 161 LRAFSSVDMSGRNFGD-EGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN----------IALKTLNLSGNP 229 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~-~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~----------~~L~~L~Ls~n~ 229 (597)
++.|++|.+++|.+.. .|+..|- ..|++|...+. +.++..++..| ..|...+.++|.
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr------~qLe~LIC~~S------l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELR------HQLEKLICHNS------LDALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHH------Hhhhhhhhhcc------HHHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 6778888888887753 2333222 24555443321 12222222221 146677777776
Q ss_pred CChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEc
Q 007577 230 IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (597)
Q Consensus 230 l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 309 (597)
+.. +-..+.-.+.|+.|+|++|++++. +.+..+++|++|||++|.+.. ++..=..-..|+.|.+
T Consensus 176 L~~-----mD~SLqll~ale~LnLshNk~~~v------~~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 176 LVL-----MDESLQLLPALESLNLSHNKFTKV------DNLRRLPKLKHLDLSYNCLRH-----VPQLSMVGCKLQLLNL 239 (1096)
T ss_pred HHh-----HHHHHHHHHHhhhhccchhhhhhh------HHHHhcccccccccccchhcc-----ccccchhhhhheeeee
Confidence 642 223333347788899999888774 356667889999999888742 2221111234888888
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCC
Q 007577 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372 (597)
Q Consensus 310 ~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 372 (597)
++|.++.. ..+.++++|+.||+++|-+.+..--.....+ ..|+.|+|.+|.+-
T Consensus 240 rnN~l~tL------~gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL------RGIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh------hhHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCccc
Confidence 88876543 3466788888889888866543211111122 26888888888653
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-07 Score=98.02 Aligned_cols=180 Identities=22% Similarity=0.183 Sum_probs=108.1
Q ss_pred hcCCCCCEEEccCCCCCh-HHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH-HHHHc------CCCCcEEEccCCC
Q 007577 327 EGNKSLRELHLHGNSIGD-EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA-EYIKN------CKSLLWINLYMND 398 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~------~~~L~~L~Ls~n~ 398 (597)
....+|++|.+.+|.+.. .|+..+-. +|++|--.+ .+ +.+..+. ...+. ...|...+.++|.
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~-------qLe~LIC~~-Sl--~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRH-------QLEKLICHN-SL--DALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHH-------hhhhhhhhc-cH--HHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 356789999999998754 33333322 455554332 11 1111111 11111 1246666677775
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+.- +-..+.-++.|++|+|++|++++.. .+..|++|++|||++|.+.... .+... . .+|+.|++
T Consensus 176 L~~-----mD~SLqll~ale~LnLshNk~~~v~------~Lr~l~~LkhLDlsyN~L~~vp--~l~~~--g-c~L~~L~l 239 (1096)
T KOG1859|consen 176 LVL-----MDESLQLLPALESLNLSHNKFTKVD------NLRRLPKLKHLDLSYNCLRHVP--QLSMV--G-CKLQLLNL 239 (1096)
T ss_pred HHh-----HHHHHHHHHHhhhhccchhhhhhhH------HHHhcccccccccccchhcccc--ccchh--h-hhheeeee
Confidence 542 3334444577899999999888743 3556799999999999775421 12111 1 35899999
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
.+|.++.. . .+.+.++|+.||+++|-|.+-.--.....+ ..|+.|+|.+|.+-.
T Consensus 240 rnN~l~tL--~----gie~LksL~~LDlsyNll~~hseL~pLwsL----s~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNNALTTL--R----GIENLKSLYGLDLSYNLLSEHSELEPLWSL----SSLIVLWLEGNPLCC 293 (1096)
T ss_pred cccHHHhh--h----hHHhhhhhhccchhHhhhhcchhhhHHHHH----HHHHHHhhcCCcccc
Confidence 99887553 2 233448889999999877664322222222 348889999997753
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=92.22 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=20.4
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
-++...++.+..+.....+.+ ... .|++|.+.+.
T Consensus 60 f~ltki~l~~~~~~~~~~~~l----~~~-~L~sl~LGnl 93 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEML----RKQ-DLESLKLGNL 93 (699)
T ss_pred heeEEeeccceecchhHHHHH----hhc-cccccCCcch
Confidence 467777777776665555332 233 3777777654
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.1e-06 Score=92.65 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCC
Q 007577 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV 256 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~ 256 (597)
.-++...++.+..+.......+.. ..|++|.+.+.
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~-----~~L~sl~LGnl 93 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRK-----QDLESLKLGNL 93 (699)
T ss_pred hheeEEeeccceecchhHHHHHhh-----ccccccCCcch
Confidence 346888888887776664444332 33888888654
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.3e-08 Score=101.65 Aligned_cols=195 Identities=22% Similarity=0.223 Sum_probs=131.5
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
-...+++.|++... +..+..+-.|+.+.++.|.| ..++..+.++..|..|+|+.|+++..+. .+.
T Consensus 77 t~~aDlsrNR~~el-----p~~~~~f~~Le~liLy~n~~-----r~ip~~i~~L~~lt~l~ls~NqlS~lp~-----~lC 141 (722)
T KOG0532|consen 77 TVFADLSRNRFSEL-----PEEACAFVSLESLILYHNCI-----RTIPEAICNLEALTFLDLSSNQLSHLPD-----GLC 141 (722)
T ss_pred hhhhhccccccccC-----chHHHHHHHHHHHHHHhccc-----eecchhhhhhhHHHHhhhccchhhcCCh-----hhh
Confidence 34567888877652 22223335578888888877 5667777788888999999988765543 233
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (597)
.+ -|+.|-+++|+++. ++..+. ..+.|..||.+.|.+.. ++..+..+.+|+.|.+..|++.+ +
T Consensus 142 ~l-pLkvli~sNNkl~~-----lp~~ig-~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-----l 204 (722)
T KOG0532|consen 142 DL-PLKVLIVSNNKLTS-----LPEEIG-LLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-----L 204 (722)
T ss_pred cC-cceeEEEecCcccc-----CCcccc-cchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-----C
Confidence 33 48888888888765 222232 33478888888888776 67777888888888888887765 5
Q ss_pred HHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+..+. .-.|..||+++|+|+. ++-.+.+++.|++|-|.+|++........... ...=.|+|+..-|+
T Consensus 205 p~El~-~LpLi~lDfScNkis~-----iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kG--kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 205 PEELC-SLPLIRLDFSCNKISY-----LPVDFRKMRHLQVLQLENNPLQSPPAQICEKG--KVHIFKYLSTQACQ 271 (722)
T ss_pred CHHHh-CCceeeeecccCceee-----cchhhhhhhhheeeeeccCCCCCChHHHHhcc--ceeeeeeecchhcc
Confidence 55555 3458889999998877 33445556888999999988876533322222 12345667776664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=8.4e-06 Score=89.53 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred cceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhh
Q 007577 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440 (597)
Q Consensus 361 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 440 (597)
++.|+|++|.+.. .++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|+++.. ++..+.
T Consensus 420 v~~L~L~~n~L~g----~ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~----iP~~l~ 487 (623)
T PLN03150 420 IDGLGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGS----IPESLG 487 (623)
T ss_pred EEEEECCCCCccc----cCCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCC----CchHHh
Confidence 5667777776665 3555666677777777777766543 445556666777777777766653 233344
Q ss_pred cCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 441 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
++++|+.|+|++|.++......+... ..++..+++.+|.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 55677777777776654433333221 1244556666554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.9e-06 Score=96.79 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=58.9
Q ss_pred cCCCcEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
++.|++|-+.+|.. .+..+ ...|..++.|..|||++|.= ...++..+..+-+|++|+++++.+.. ++
T Consensus 544 ~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~~-----LP 611 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGISH-----LP 611 (889)
T ss_pred CCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCccc-----cc
Confidence 34566666665531 11111 22355567777777776531 12345555555667777777766653 55
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
.++.++..|.+|++..+.--.. ++.....+.+|++|.+....
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hHHHHHHhhheecccccccccc----ccchhhhcccccEEEeeccc
Confidence 6666666777777766542221 13333345667777665543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.9e-05 Score=86.71 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=79.2
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
.++.|+|++|.+...-...+ ..+++|+.|+|++|.+.. .++..+..+++|+.|+|++|.++.. ++..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-----~~L~~L~~L~Ls~N~l~g----~iP~~~~~l~~L~~LdLs~N~lsg~----iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-----SKLRHLQSINLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGS----IPES 485 (623)
T ss_pred EEEEEECCCCCccccCCHHH-----hCCCCCCEEECCCCcccC----cCChHHhCCCCCCEEECCCCCCCCC----CchH
Confidence 36788888888765422222 345689999999998876 3777788899999999999988765 5666
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 454 (597)
+..+++|++|+|++|.++......+... ..++..+++.+|.
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 7788899999999998876544444332 2456788888874
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.9e-07 Score=65.08 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.0
Q ss_pred CCcCEEecCCCCCC
Q 007577 471 GNINTLKLGWCQIG 484 (597)
Q Consensus 471 ~~L~~L~L~~n~i~ 484 (597)
++|++|++++|.++
T Consensus 25 ~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 25 PNLETLDLSNNNLT 38 (61)
T ss_dssp TTESEEEETSSSES
T ss_pred CCCCEeEccCCccC
Confidence 44444444444443
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.2e-05 Score=67.23 Aligned_cols=94 Identities=21% Similarity=0.222 Sum_probs=54.9
Q ss_pred CCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHH
Q 007577 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIA 549 (597)
Q Consensus 470 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~ 549 (597)
...|+.++|++|.+.+...+.-. ..+.++.|++++|.|.+.... ++.+ +.|+.|++++|.+. ..++.+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~----kf~t~t~lNl~~neisdvPeE-~Aam-----~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTI----KFPTATTLNLANNEISDVPEE-LAAM-----PALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhhhCCHHHhh----ccchhhhhhcchhhhhhchHH-Hhhh-----HHhhhcccccCccc-cchHHHH
Confidence 34555566666665544333222 225666777777777665443 5555 56777777777766 3344555
Q ss_pred HHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 550 QALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 550 ~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
...+ +-.|+..+|.+-.+..+.|..
T Consensus 121 ~L~~------l~~Lds~~na~~eid~dl~~s 145 (177)
T KOG4579|consen 121 PLIK------LDMLDSPENARAEIDVDLFYS 145 (177)
T ss_pred HHHh------HHHhcCCCCccccCcHHHhcc
Confidence 5433 666777777777666665544
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.7e-06 Score=63.51 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=26.8
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
+|+.|++++|.++.- ....+..+++|++|++++|.++.. -..++..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i----~~~~f~~l~~L~~L~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI----PPDSFSNLPNLETLDLSNNNLTSI----PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEE----CTTTTTTGTTESEEEETSSSESEE----ETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCcc----CHHHHcCCCCCCEeEccCCccCcc----CHHHHcCCCCCCEEeCcCCc
Confidence 445555555544441 112344455555555555554432 11233444555555555544
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.1e-05 Score=90.90 Aligned_cols=108 Identities=25% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCcCEEEecCCC--CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHH
Q 007577 245 NAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 245 ~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 322 (597)
++.|+.|-+..|. +... -..++..++.|+.|||++|.= ...+|..++.+-+|+.|+++++.+. .+
T Consensus 544 ~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~----l~~LP~~I~~Li~LryL~L~~t~I~-----~L 610 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSS----LSKLPSSIGELVHLRYLDLSDTGIS-----HL 610 (889)
T ss_pred CCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCc----cCcCChHHhhhhhhhcccccCCCcc-----cc
Confidence 4567777666664 2221 122344557777777776532 1455666666777777777777655 33
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCC
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 370 (597)
+..+.+++.|.+|++..+..-..- .+....+++|++|.+....
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESI-----PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred chHHHHHHhhheeccccccccccc-----cchhhhcccccEEEeeccc
Confidence 455666777777777665421110 1111223467777766543
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=97.69 E-value=1.7e-05 Score=79.41 Aligned_cols=347 Identities=16% Similarity=0.054 Sum_probs=173.9
Q ss_pred ccCCCccEEEeccCCCCHHHHHHHHHHh--hhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 187 GYNQTAEEVSFAANGITAAGIKAFDGVL--QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 187 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
..-..++.+.+.-|.+.......+.... ..++.+++++++.|.+.+....+|..- .--++++.|+.++..+.
T Consensus 132 ~~s~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis 205 (553)
T KOG4242|consen 132 SPSAPLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFIS 205 (553)
T ss_pred cccccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHH
Confidence 3345666667766665544333333222 224457778888887777655554431 12266777777766444
Q ss_pred HHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh-hcCCCCCEEEccCCCCC
Q 007577 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL-EGNKSLRELHLHGNSIG 343 (597)
Q Consensus 265 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~i~ 343 (597)
.+..--. -..+.+++++.|...+.. ..+.........++.++.+...+.-... +...+ ..-..+...+++.|...
T Consensus 206 ~l~~qsg-~~~lteldls~n~~Kddi-p~~~n~~a~~~vl~~ld~s~tgirlD~l--~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 206 KLLIQSG-RLWLTELDLSTNGGKDDI-PRTLNKKAGTLVLFKLDRSTTGIRLDLL--TSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred Hhhhhhc-cccccccccccCCCCccc-hhHHHHhhhhhhhhcccccccccchhhc--ccccccccccccchhhhccCCCC
Confidence 3331111 124667777777654332 2223333334566666666654432211 00111 12235666666665442
Q ss_pred h----HHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCC--cEEEccCCCCCcHHHHHHHHHHhcCCCc
Q 007577 344 D----EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL--LWINLYMNDIGDEGAEKIADALKQNRTI 417 (597)
Q Consensus 344 ~----~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~l~~~~~~~l~~~l~~~~~L 417 (597)
. ++....-+. ++..+++ +|++..+...++....+.-.+...... -.+|+..|...+..+ ..+-..-..+
T Consensus 282 ~skg~Egg~~~k~~-fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~v---leaci~g~R~ 356 (553)
T KOG4242|consen 282 PSKGEEGGGAEKDT-FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEV---LEACIFGQRV 356 (553)
T ss_pred cccccccccccccc-cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccch---hhccccceee
Confidence 2 222211111 1233355 666666666655443333222222221 234555554443211 1111112346
Q ss_pred cEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCC---CCHHHH--HHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP---IGADGA--KALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 418 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
++|.+.+|++..++-... .+.+.+.++.+++..-. +-+.+. ..+...-....-+..+.++.|..... ...+.
T Consensus 357 q~l~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~i 433 (553)
T KOG4242|consen 357 QVLLQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAI 433 (553)
T ss_pred eEeecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHH
Confidence 777777776655443332 34444666666665431 111111 11111112234566777777766443 34444
Q ss_pred HHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHH
Q 007577 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l 552 (597)
+.+...+.+.+|++++|..++.+...+...++ .|..++....+.|.+++.+..-+....
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~ 492 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEER 492 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhc
Confidence 55566677788888888777776666666554 456677777777777777666655443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=1.6e-05 Score=74.29 Aligned_cols=114 Identities=25% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEA 297 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 297 (597)
.+.++|+..++.++|.. ...+++.|+.|.|+-|+|+.. .-+..|+.|++|+|..|.|.+- .. ...
T Consensus 19 ~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sl--dE-L~Y 83 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESL--DE-LEY 83 (388)
T ss_pred HHhhhhcccCCCccHHH------HHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccH--HH-HHH
Confidence 45788888888888763 233468888888888888763 2345568888888888888542 22 235
Q ss_pred HhhCCCccEEEcCCCCCCh-HHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 298 LLENSTIRSLHLNGNYGGA-LGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
+.++++|+.|+|..|.... .+...=...+.-+|+|+.|| +-.++.+.+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle 133 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELE 133 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHH
Confidence 6678888888888775322 22223334566777888776 2345554443
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=97.54 E-value=5.1e-05 Score=76.11 Aligned_cols=343 Identities=16% Similarity=0.109 Sum_probs=177.9
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
..++.+++.-|-+.......+..... .++.+++++++.|.+.+...-.+..- .--+.++.+.+++..+..++
T Consensus 135 ~~l~~l~l~~cml~pdf~~kl~hs~~~rpnpr~r~~dls~npi~dkvpihl~~p------~~pl~lr~c~lsskfis~l~ 208 (553)
T KOG4242|consen 135 APLPPLGLLPCMLLPDFGQKLRHSTRARPNPRARQHDLSPNPIGDKVPIHLPQP------GNPLSLRVCELSSKFISKLL 208 (553)
T ss_pred ccCCccCchhccCchhhcccccchhhcCCcchhhhhccCCCcccccCCccccCC------CCccchhhhhhhhhHHHHhh
Confidence 34556666666555444433333332 24566777777777665543333321 11166666766666555444
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH--hhCCCccEEEcCCCCCCh-
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL--LENSTIRSLHLNGNYGGA- 316 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~n~i~~- 316 (597)
.-- .-..+.+++++.|...+.... +.........+++++.+...+.- ..+...+ ..-++++..+++.|....
T Consensus 209 ~qs-g~~~lteldls~n~~Kddip~-~~n~~a~~~vl~~ld~s~tgirl---D~l~~~l~~g~~tkl~~~kls~ng~s~s 283 (553)
T KOG4242|consen 209 IQS-GRLWLTELDLSTNGGKDDIPR-TLNKKAGTLVLFKLDRSTTGIRL---DLLTSPLAAGRTTKLTFGKLSRNGTSPS 283 (553)
T ss_pred hhh-ccccccccccccCCCCccchh-HHHHhhhhhhhhcccccccccch---hhcccccccccccccchhhhccCCCCcc
Confidence 110 124467777777765443222 22222223446677776655432 1112211 123466666666554321
Q ss_pred ---HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccc-ceeeccCCCCChhHHHHHHHHHHcCCCCcEE
Q 007577 317 ---LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL-AVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (597)
Q Consensus 317 ---~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (597)
++....-..+..-+++ +|++.++...++....+.-++..+-+.+ -.+|+..|...+.. ..+.-..-..+++|
T Consensus 284 kg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q~l 359 (553)
T KOG4242|consen 284 KGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQVL 359 (553)
T ss_pred cccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeeeEe
Confidence 1122222333344556 7777777776666666655554333222 34666666544421 11111222347777
Q ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC---ChHHHHH--HHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI---HSKGASA--IARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 393 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~~~~~--l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
.+..|.+..++-... .+...+.++.+++.+-.- ...+..+ +...-...--+..+.++.|....+ ...+...+
T Consensus 360 ~~rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l 436 (553)
T KOG4242|consen 360 LQRDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKL 436 (553)
T ss_pred ecccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhh
Confidence 777776665543333 344556677776654321 1111111 111111223466777777766543 33344444
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
...+.+.+|++++|..++.+...+...++.+-.++.+..+.|.+++.+...+...
T Consensus 437 ~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~ 491 (553)
T KOG4242|consen 437 LSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEE 491 (553)
T ss_pred ccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhh
Confidence 5567777777777777777666666666667777777777777777665555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.50 E-value=3.5e-05 Score=68.87 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=51.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+...+||++|.+... ..+..++.|.+|.|++|.|+.. ...+.. +++|+.|.|.+|.|...+- + .-
T Consensus 43 ~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d--l-~p 108 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD--L-DP 108 (233)
T ss_pred ccceecccccchhhc------ccCCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh--c-ch
Confidence 667777777776652 3456677777777877777652 112221 4667777777776655321 1 11
Q ss_pred hhcCCCcCEEECcCCCCCH
Q 007577 439 LKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~ 457 (597)
+..||+|++|.+-+|++..
T Consensus 109 La~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred hccCCccceeeecCCchhc
Confidence 4456777777777776644
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.2e-05 Score=64.01 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=16.3
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~ 259 (597)
.++.|++++|.+.+.... ++ .++.|+.|++++|.+.
T Consensus 78 t~t~lNl~~neisdvPeE-~A----am~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 78 TATTLNLANNEISDVPEE-LA----AMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhcchhhhhhchHH-Hh----hhHHhhhcccccCccc
Confidence 455555555555443222 22 2245555555555444
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=5.6e-05 Score=70.81 Aligned_cols=105 Identities=21% Similarity=0.180 Sum_probs=77.2
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+.+.++|++.+|.++++ .++..++.|+.|.||-|+|+.. .-+..|++|++|+|..|.|.+.. .+ .
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~sld--EL-~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIESLD--EL-E 82 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeeccccccc------hhHHHHHHHHHHHHHhcccccHH--HH-H
Confidence 56888999999999876 3345678899999999999753 34456799999999999988742 22 4
Q ss_pred HHHcCCCccEEEeccCCCChh-hHHHHHHHHhhCCCccEEE
Q 007577 269 LLKNNSILRVLELNNNMIDYS-GFTSLAEALLENSTIRSLH 308 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~L~~L~ 308 (597)
.++++++|+.|.|..|.-... +-..=...+..+++|+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 577889999999998854332 2222334455688898876
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=49.21 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=18.3
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+|++|++++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 34345555555555555555543
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00019 Score=48.31 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=17.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+|++|++++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45555555555554 33334445555555555555543
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.25 E-value=9.5e-05 Score=66.18 Aligned_cols=67 Identities=27% Similarity=0.311 Sum_probs=27.8
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
|..++.|..|.+++|+|+.. ...+....++|+.|.|.+|.|..-+- ...+..||+|++|.+-+|+++
T Consensus 60 lp~l~rL~tLll~nNrIt~I-----~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI-----DPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceee-----ccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchh
Confidence 33444555555555555431 11111222345555555544433100 012344555555555555443
|
|
| >KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0018 Score=62.55 Aligned_cols=120 Identities=27% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 386 CKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 386 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
-+.++..+++++ .|....+..+..++..++..+.+.+.+.+..+....+++..+..|+.|++|++++|.|+..|+..+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 356777777776 6777777778888888888888888888888877777888888888888888888888888888888
Q ss_pred HHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEE
Q 007577 465 EVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
.++..+.+|..+.+.+-. ++......++.++..+.+|-..-
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~g 319 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFG 319 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccc
Confidence 777777777777664432 34444455666666555554443
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00032 Score=62.92 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=45.7
Q ss_pred CccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHH
Q 007577 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVAD 493 (597)
Q Consensus 416 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 493 (597)
.++.+|-+++.|..+|...+... +.|+.|.+.+| .+.|.++..+... .++|+.|+|++|. |++.+...+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHHH
Confidence 45666666666666665554433 66666666666 3555555555442 3566666666553 55555554443
Q ss_pred HHhcCCCccEEEccC
Q 007577 494 MLRYNNTISILDLRA 508 (597)
Q Consensus 494 ~l~~~~~L~~L~l~~ 508 (597)
. ++|+.|.|.+
T Consensus 175 l----knLr~L~l~~ 185 (221)
T KOG3864|consen 175 L----KNLRRLHLYD 185 (221)
T ss_pred h----hhhHHHHhcC
Confidence 3 5555555544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00038 Score=62.48 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=57.7
Q ss_pred CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHH
Q 007577 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLA 520 (597)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~ 520 (597)
-.++.+|-++..|..+|...+... +.|+.|.+.+|. +.+.+.+.+... .++|+.|+|++| +|++.|+..+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~~---~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGGL---APSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhccc---ccchheeeccCCCeechhHHHHHH
Confidence 356777777777777776655543 677777777775 666666666653 367777777777 77777777776
Q ss_pred HHHhhcCccccEEEccCC
Q 007577 521 QSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 521 ~~l~~~n~~L~~L~Ls~n 538 (597)
.. ++|+.|.|.+=
T Consensus 174 ~l-----knLr~L~l~~l 186 (221)
T KOG3864|consen 174 KL-----KNLRRLHLYDL 186 (221)
T ss_pred Hh-----hhhHHHHhcCc
Confidence 65 66777776654
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.001 Score=62.26 Aligned_cols=82 Identities=24% Similarity=0.296 Sum_probs=38.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc-HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD-EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
.|+.|++.++.++.. ..+..+++|++|.++.|.... .++..+.. .+++|++|++++|+|.. +..+..
T Consensus 44 ~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~Nki~~--lstl~p- 111 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSGNKIKD--LSTLRP- 111 (260)
T ss_pred chhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecCCcccc--ccccch-
Confidence 566666666655551 233455666666666662221 12222222 23566666666665553 112211
Q ss_pred hhcCCCcCEEECcCC
Q 007577 439 LKDNSVITSLDLAYN 453 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n 453 (597)
++..++|..|++.+|
T Consensus 112 l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 112 LKELENLKSLDLFNC 126 (260)
T ss_pred hhhhcchhhhhcccC
Confidence 223355555555555
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0063 Score=36.38 Aligned_cols=24 Identities=42% Similarity=0.637 Sum_probs=12.3
Q ss_pred ccccEEEccCCCCChHHHHHHHHH
Q 007577 528 EALTSIDLAFNEIRDDGAFAIAQA 551 (597)
Q Consensus 528 ~~L~~L~Ls~n~i~~~~~~~l~~~ 551 (597)
++|++|||++|.|++.|...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 345555555555555555555444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.002 Score=60.44 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=31.2
Q ss_pred cccceeeccCC--CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 359 GKLAVLDIGNN--SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 359 ~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
++|+.|.++.| .++. .+......+|+|++|++++|+|.+ +..+ ..++.+.+|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~----~l~vl~e~~P~l~~l~ls~Nki~~--lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSG----GLEVLAEKAPNLKVLNLSGNKIKD--LSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccc----cceehhhhCCceeEEeecCCcccc--cccc-chhhhhcchhhhhcccCC
Confidence 45666666666 3332 133334445666666666666554 1112 123344556666666653
|
|
| >KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=55.39 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=72.9
Q ss_pred CCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 414 NRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 414 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
-+.++..+++++ +|.......+...+..+...+...+.+...++.....+...+..|..|++|++.+|.|+..+...+.
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 356777777666 5666667777777777777777777776666666666667777777777777777777777777777
Q ss_pred HHHhcCCCccEEEccCC--CCChHHHHHHHHHHh
Q 007577 493 DMLRYNNTISILDLRAN--GLRDEGAKCLAQSFK 524 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n--~i~~~~~~~l~~~l~ 524 (597)
.++..+.+|.++-+.+- .++...-..++.++.
T Consensus 277 ~al~~n~tl~el~~dnqrq~lg~~vemeia~~le 310 (353)
T KOG3735|consen 277 RALQSNKSLTELKNDNQRQVLGNAVEMEIALELE 310 (353)
T ss_pred HHHhccchhhHhhhhhHHhhcccHHHHHHHHHHH
Confidence 77777777766655432 344444444444443
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.011 Score=35.27 Aligned_cols=25 Identities=44% Similarity=0.668 Sum_probs=20.0
Q ss_pred CCccEEEccCCCCChHHHHHHHHHH
Q 007577 499 NTISILDLRANGLRDEGAKCLAQSF 523 (597)
Q Consensus 499 ~~L~~L~l~~n~i~~~~~~~l~~~l 523 (597)
++|++|||++|.|++.|...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5788888888888888888887764
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0042 Score=63.19 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=77.6
Q ss_pred hccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCC-CCChhHHHHHHHHHhcCCCcCEEEecCC-CCChHHH
Q 007577 186 LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGA 263 (597)
Q Consensus 186 l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~~-~l~~~~~ 263 (597)
+..+.+++.|++++|.++.. +. +. .+|++|+++++ .++. +++.+ .++|++|++++| .+..
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-----P~-LP--~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-----PV-LP--NELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-----CC-CC--CCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc---
Confidence 45568899999999976532 21 11 36999999874 3322 22222 267899999988 4432
Q ss_pred HHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007577 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 264 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
++ ++|+.|++..+.... +..++ ++|+.|.+.++.... ...++..+ .++|++|++++|...
T Consensus 110 --LP------~sLe~L~L~~n~~~~--L~~LP------ssLk~L~I~~~n~~~--~~~lp~~L--PsSLk~L~Is~c~~i 169 (426)
T PRK15386 110 --LP------ESVRSLEIKGSATDS--IKNVP------NGLTSLSINSYNPEN--QARIDNLI--SPSLKTLSLTGCSNI 169 (426)
T ss_pred --cc------cccceEEeCCCCCcc--cccCc------chHhheecccccccc--cccccccc--CCcccEEEecCCCcc
Confidence 22 468888887765432 12222 467777775432110 00000001 147888888887643
Q ss_pred hHHHHHHHHhhhcCccccceeeccCC
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNN 369 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (597)
. ++..+. .+|+.|+++.+
T Consensus 170 ~-----LP~~LP---~SLk~L~ls~n 187 (426)
T PRK15386 170 I-----LPEKLP---ESLQSITLHIE 187 (426)
T ss_pred c-----Cccccc---ccCcEEEeccc
Confidence 2 111111 36888888765
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0058 Score=35.01 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=7.3
Q ss_pred ccEEEccCCCCChHHHHHH
Q 007577 530 LTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 530 L~~L~Ls~n~i~~~~~~~l 548 (597)
|++|+|++|+|++.++..|
T Consensus 4 L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 4 LETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -SEEE-TSSBEHHHHHHHH
T ss_pred CCEEEccCCcCCHHHHHHh
Confidence 4444444444444444433
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.0097 Score=60.63 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=84.0
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCC-CCChhHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGN-PIGDEGV 235 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~ 235 (597)
-+..+++++.|++++|.+... +. -..+|++|.+++|.- +..++..+. ++|++|++++| .+..
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-----P~---LP~sLtsL~Lsnc~n----LtsLP~~LP--~nLe~L~Ls~Cs~L~s--- 109 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-----PV---LPNELTEITIENCNN----LTTLPGSIP--EGLEKLTVCHCPEISG--- 109 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-----CC---CCCCCcEEEccCCCC----cccCCchhh--hhhhheEccCcccccc---
Confidence 355679999999999976642 31 135799999998742 112232232 47999999988 4432
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 314 (597)
++ .+|+.|++..+..... ..++ ++|+.|.+.+++ ... ..++.. -.++|++|++++|..
T Consensus 110 --LP------~sLe~L~L~~n~~~~L--~~LP------ssLk~L~I~~~n~~~~---~~lp~~--LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 110 --LP------ESVRSLEIKGSATDSI--KNVP------NGLTSLSINSYNPENQ---ARIDNL--ISPSLKTLSLTGCSN 168 (426)
T ss_pred --cc------cccceEEeCCCCCccc--ccCc------chHhheeccccccccc---cccccc--cCCcccEEEecCCCc
Confidence 32 6799999987765431 1222 357788775432 111 001110 136899999988874
Q ss_pred ChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 315 GALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 315 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
...+ ..+. .+|+.|+++.+
T Consensus 169 i~LP-----~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 169 IILP-----EKLP--ESLQSITLHIE 187 (426)
T ss_pred ccCc-----cccc--ccCcEEEeccc
Confidence 3211 1122 47888888765
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.0076 Score=34.50 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=11.4
Q ss_pred CCccEEEccCCCCChHHHHHHH
Q 007577 499 NTISILDLRANGLRDEGAKCLA 520 (597)
Q Consensus 499 ~~L~~L~l~~n~i~~~~~~~l~ 520 (597)
++|++|+|++|.|++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555666666666655555543
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.076 Score=31.00 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=8.4
Q ss_pred CCccEEEccCC-CCChHHHHH
Q 007577 499 NTISILDLRAN-GLRDEGAKC 518 (597)
Q Consensus 499 ~~L~~L~l~~n-~i~~~~~~~ 518 (597)
++|++|++++| .|+|.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 34444444444 344444433
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.16 Score=29.63 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=9.1
Q ss_pred CCCcEEEccCC-CCCcHHHHH
Q 007577 387 KSLLWINLYMN-DIGDEGAEK 406 (597)
Q Consensus 387 ~~L~~L~Ls~n-~l~~~~~~~ 406 (597)
++|++|+|++| .++|.++..
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~ 22 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQA 22 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHH
Confidence 34444444444 344444433
|
|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.9 Score=45.29 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.8
Q ss_pred CCCCCEEEccCCCC
Q 007577 329 NKSLRELHLHGNSI 342 (597)
Q Consensus 329 ~~~L~~L~Ls~n~i 342 (597)
.+.+..+.|++|++
T Consensus 217 ~p~i~sl~lsnNrL 230 (585)
T KOG3763|consen 217 FPEILSLSLSNNRL 230 (585)
T ss_pred Ccceeeeecccchh
Confidence 34445555555544
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=85.47 E-value=0.55 Score=24.23 Aligned_cols=11 Identities=36% Similarity=0.661 Sum_probs=3.6
Q ss_pred ccEEEccCCCC
Q 007577 530 LTSIDLAFNEI 540 (597)
Q Consensus 530 L~~L~Ls~n~i 540 (597)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
|
... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=84.83 E-value=0.21 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=9.7
Q ss_pred eeEEEcccCccchhh
Q 007577 560 VTSLNLANNFLTKFG 574 (597)
Q Consensus 560 L~~L~L~~N~i~~~~ 574 (597)
|++|||++|.|+.+.
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 666777777666544
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.04 E-value=2.4 Score=44.55 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHhc--CCCcEEEcCCCCCC
Q 007577 146 LFRESKQTLNEFAKEL--RAFSSVDMSGRNFG 175 (597)
Q Consensus 146 ~~~~~~~~l~~~~~~~--~~L~~L~Ls~~~l~ 175 (597)
+.....+.+..++... +.=+.|||.+-+.+
T Consensus 157 lkpe~IE~l~~v~~kRyd~~~~~LDL~nl~~D 188 (585)
T KOG3763|consen 157 LKPEEIEILKLVMNKRYDVSQQALDLQNLRFD 188 (585)
T ss_pred cCHHHHHHHHHHHhccccHHHhhhhhhccccC
Confidence 3455555555554432 33445676655444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 597 | ||||
| 2bnh_A | 457 | Porcine Ribonuclease Inhibitor Length = 457 | 2e-26 | ||
| 2bnh_A | 457 | Porcine Ribonuclease Inhibitor Length = 457 | 3e-24 | ||
| 3tsr_E | 457 | X-Ray Structure Of Mouse Ribonuclease Inhibitor Com | 8e-26 | ||
| 1a4y_A | 460 | Ribonuclease Inhibitor-Angiogenin Complex Length = | 1e-22 | ||
| 1z7x_W | 461 | X-Ray Structure Of Human Ribonuclease Inhibitor Com | 1e-22 | ||
| 3un9_A | 372 | Crystal Structure Of An Immune Receptor Length = 37 | 8e-06 | ||
| 1yrg_A | 385 | The Crystal Structure Of Rna1p: A New Fold For A Gt | 4e-05 | ||
| 1k5d_C | 386 | Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Compl | 5e-05 |
| >pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor Length = 457 | Back alignment and structure |
|
| >pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed With Mouse Ribonuclease 1 Length = 457 | Back alignment and structure |
|
| >pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex Length = 460 | Back alignment and structure |
|
| >pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed With Ribonuclease I Length = 461 | Back alignment and structure |
|
| >pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor Length = 372 | Back alignment and structure |
|
| >pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase- Activating Protein Length = 385 | Back alignment and structure |
|
| >pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex Length = 386 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 378 bits (973), Expect = e-126
Identities = 109/420 (25%), Positives = 180/420 (42%), Gaps = 9/420 (2%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
S+D+ D AE L Q + V G+T A K L+ N AL LNL
Sbjct: 7 SLDIQCEELSDARW---AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 226 SGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
N +GD GV C+ L + +++L L + L G ++ L+ L+ L L++N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 285 MIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
++ +G L E LL+ + L L A LA L +EL + N I
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
+ G+R L GL +L L + + +++ + + + SL + L N +GD G
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 404 AEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
++ L + + T+ + I +KG + RVL+ + L LA N +G +GA+
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 463 LSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
L E L + +L + C A+ + +L N + L + N L D G + L Q
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
L + LA ++ D ++A L AN ++ L+L+NN L G L ++
Sbjct: 364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAGILQLVES 421
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 330 bits (847), Expect = e-107
Identities = 96/404 (23%), Positives = 177/404 (43%), Gaps = 7/404 (1%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224
+++ GD G+ + + L +++S +T AG L++ L+ L+
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 225 LSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN 283
LS N +GD G++ LC+ L+D +E+LQL L + +A +L+ + L ++N
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 284 NMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342
N I+ +G L + L ++ + +L L + L + SLREL L N +
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 343 GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402
GD G+ L GL +L L I I+AKG + ++ +SL ++L N++GDE
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 403 GAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK 461
GA + + L + + ++ + + + S + VL N + L ++ N + G +
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 462 ALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLA 520
L + L + L L C + S +A L N+++ LDL N L D G L
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 419
Query: 521 QSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
+S + L + L ++ + K ++ ++
Sbjct: 420 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP--SLRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = 3e-96
Identities = 82/368 (22%), Positives = 146/368 (39%), Gaps = 8/368 (2%)
Query: 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
++ +++L++ + D L +L + ++L L + K I+ L+ N L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 58
Query: 277 RVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
L L +N + G + + L + I+ L L G L+ L +L+EL
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
HL N +GD G++ L GL + +L L + S+SA +A ++ + +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 396 MNDIGDEGAEKIADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
NDI + G + LK + + + L + S + ++ + + L L N
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 455 IGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
+G G L +L + TL + C I A G + +LR ++ L L N L D
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
EGA+ L ++ L S+ + + L N + L ++NN L
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR--FLLELQISNNRLEDA 356
Query: 574 GQSALTDA 581
G L
Sbjct: 357 GVRELCQG 364
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 1e-91
Identities = 86/345 (24%), Positives = 151/345 (43%), Gaps = 5/345 (1%)
Query: 165 SSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQSNIALKTL 223
+ +S GD GL L E L Q E++ ++AA + VL++ K L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175
Query: 224 NLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
+S N I + GV+ LC L D+ +E L+L S + + + + ++ + + LR L L
Sbjct: 176 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235
Query: 283 NNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS 341
+N + G L LL +S +R+L + A G L + L +SL+EL L GN
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401
+GDEG R L L +L L + + S +A H + + + LL + + N + D
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355
Query: 402 EGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460
G ++ L Q + + L ++ S++A L N + LDL+ N +G G
Sbjct: 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415
Query: 461 KALSEVLKF-HGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
L E ++ + L L + + + + ++ ++
Sbjct: 416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 1e-95
Identities = 74/394 (18%), Positives = 140/394 (35%), Gaps = 35/394 (8%)
Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
+ +++ +L + I E K + +L+++ V+ + LS + E A+ ++E + +
Sbjct: 2 ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 276 LRVLELNNNMID------YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
L + E ++ L +ALL+ + ++ L+ N G L L +
Sbjct: 62 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
L L+LH N +G + + L V + KN L
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQE--------------------LAVNKKAKNAPPL 161
Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS-AIARVLKDNSVITSL 448
I N + + ++ A + +R + T+ + N I +G + L + L
Sbjct: 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVL 221
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY--NNTISILDL 506
DL N G+ AL+ LK N+ L L C + A GA V D N + L L
Sbjct: 222 DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281
Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF--AIAQALKANEDVAVTSLN 564
+ N + + + L L ++L N ++ I + + L+
Sbjct: 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELD 341
Query: 565 LANNFLTKFGQSALTDA----KDLVYEMSEKEVN 594
+ + +A + EKE
Sbjct: 342 DMEELTDEEEEDEEEEAESQSPEPETSEEEKEDK 375
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 9e-76
Identities = 65/338 (19%), Positives = 124/338 (36%), Gaps = 22/338 (6%)
Query: 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221
+ + E + L + + +E+ + N I + + S L+
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 222 TLNLSGNPIGD------EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
S G E ++ L L+ + ++LS + + + L ++
Sbjct: 64 IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123
Query: 276 LRVLELNNNMIDYSGFTSLAEALLE---------NSTIRSLHLNGNYGGALGANALAKGL 326
L L L+NN + +A AL E +RS+ N AK
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 327 EGNKSLRELHLHGNSIGDEGI-RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
+ ++ L + + N I EGI L+ GL+ + +L VLD+ +N+ + G+ +A +K+
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKS 242
Query: 386 CKSLLWINLYMNDIGDEGAEKIADALKQ--NRTITTIDLGGNNIHSKGASAIARVLKDN- 442
+L + L + GA + DA + N + T+ L N I + V+ +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302
Query: 443 SVITSLDLAYNPIGADGA--KALSEVLKFHGNINTLKL 478
+ L+L N + + EV G +L
Sbjct: 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 5e-72
Identities = 61/299 (20%), Positives = 116/299 (38%), Gaps = 18/299 (6%)
Query: 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK 358
+ +I L + ++ L + S++E+ L GN+IG E R L ++S+K
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 359 GKLAVLDIGNNSIS------AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
L + + + + + + + C L + L N G E + D L
Sbjct: 61 -DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVL---------KDNSVITSLDLAYNPIGADGAKAL 463
++ + + L N + + + IAR L K+ + S+ N + K
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179
Query: 464 SEVLKFHGNINTLKLGWCQIGASGAE-FVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522
++ + H ++T+K+ I G E + + L Y + +LDL+ N G+ LA +
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239
Query: 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
K L + L + GA A+ A E++ + +L L N + L
Sbjct: 240 LK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-40
Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 26/277 (9%)
Query: 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFD 211
+ L +F + + + G + +A +L ++
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK----------------- 154
Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK-AIAELL 270
++ L+++ N + + +K + + +++ +R EG + + E L
Sbjct: 155 --AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE--G 328
L+VL+L +N + G ++LA AL +R L LN A GA A+
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNC 386
N L+ L L N I + +R L + + + L L++ N S + + E
Sbjct: 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 332
Query: 387 K--SLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
L ++ +E ++ +A Q+ T +
Sbjct: 333 GRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSE 369
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-32
Identities = 40/202 (19%), Positives = 65/202 (32%), Gaps = 6/202 (2%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIK- 208
+ +N+ AK S+ + + A++ ++ V NGI GI+
Sbjct: 147 QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
L LK L+L N G L L + L L+ L GA A+ +
Sbjct: 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266
Query: 269 LLKN--NSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGA--NALA 323
N L+ L L N I+ +L + E + L LNGN + +
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326
Query: 324 KGLEGNKSLRELHLHGNSIGDE 345
+ L +
Sbjct: 327 EVFSTRGRGELDELDDMEELTD 348
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 268 bits (686), Expect = 8e-85
Identities = 56/354 (15%), Positives = 129/354 (36%), Gaps = 10/354 (2%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDL 258
G + + +L+LS N + L + A V L LS L
Sbjct: 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL 63
Query: 259 RDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGA 316
+ + + ++L + + L L+ N + Y L + L TI L L N +
Sbjct: 64 GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123
Query: 317 LGANALAKGLEG-NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375
++ + S+ L+L GN +G + L+ L++ + L++ N++++K
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183
Query: 376 AFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGAS 433
+A+++ + S+ ++L N +G + ++A + +++L N +H
Sbjct: 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243
Query: 434 AIARVLKDNSVITSLDLAYNP---IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490
+ + + ++ L Y+ + + KAL I + +I S +
Sbjct: 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303
Query: 491 VADMLR-YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
+++++R + + L L + + L + +
Sbjct: 304 ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 250 bits (641), Expect = 3e-78
Identities = 50/355 (14%), Positives = 122/355 (34%), Gaps = 10/355 (2%)
Query: 225 LSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNN 283
++ G + + GV L LS +L + + + + L L+
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 284 NMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGANALAKGLEG-NKSLRELHLHGNS 341
N + + L + L + + SL+L+GN+ ++ L K L ++ L L N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 342 IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIG 400
+ S+ + L++ N + K + + + + ++ +NL N++
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 401 DEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGAD 458
+ ++A L ++T++DL N + K + +A + + + SL+L N +
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240
Query: 459 GAKALSEVLKFHGNINTLKLGW---CQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515
+ L + ++ T+ L + + + + I ++D +
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300
Query: 516 AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
+ ++ + ++ L + D + L
Sbjct: 301 SIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD-ELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 5e-77
Identities = 64/351 (18%), Positives = 127/351 (36%), Gaps = 11/351 (3%)
Query: 175 GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIA-LKTLNLSGNPIGDE 233
G + E + + N + + + A + +LNLSGN +G +
Sbjct: 7 LHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK 66
Query: 234 GVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGF 291
L IL A V L LS L + + + + L + VL+L N
Sbjct: 67 NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126
Query: 292 TSLAEALL-ENSTIRSLHLNGNYGGALGANALAKGLEG-NKSLRELHLHGNSIGDEGIRA 349
+ +A ++I SL+L GN G ++ L + L ++ L+L GN++ +
Sbjct: 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE 186
Query: 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIA 408
L L+S + LD+ N + K +A + ++ +NL +N + E +
Sbjct: 187 LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246
Query: 409 DALKQNRTITTIDLGGN---NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465
+ + T+ L + N+ + A+ + I +D I + +S
Sbjct: 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306
Query: 466 VLK-FHGNINTLKLGWCQI-GASGAEFVADMLRYNNTISILDLRANGLRDE 514
+++ G + L + A + + L + + L +
Sbjct: 307 LIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEH 357
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 4e-71
Identities = 51/310 (16%), Positives = 126/310 (40%), Gaps = 12/310 (3%)
Query: 281 LNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK-SLRELHLHG 339
+N + + G + E + SL L+ N ++ L + S+ L+L G
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK-SLLWINLYMND 398
NS+G + L+ L++ + L++ N +S K + + + + ++ ++L ND
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 399 IGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLAYNPIG 456
+ + + A +IT+++L GN++ K + + ++L + + SL+L N +
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 457 ADGAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNN-TISILDLRANGLRDE 514
+ L++ L ++ +L L +G +A + + L+L N L
Sbjct: 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240
Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRD---DGAFAIAQALKANEDVAVTSLNLANNFLT 571
+ L + L ++ L ++ +++ + A+ A + + ++ +
Sbjct: 241 SLENLKLLKD-SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK--IILVDKNGKEIH 297
Query: 572 KFGQSALTDA 581
+++
Sbjct: 298 PSHSIPISNL 307
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 2e-50
Identities = 43/298 (14%), Positives = 100/298 (33%), Gaps = 33/298 (11%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDGVLQS-NIALKTL 223
S+++SG + L ++L + N ++ F + ++ +L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143
Query: 224 NLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLEL 281
NL GN +G + L IL A V L L +L + +A+ L + + L+L
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203
Query: 282 NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340
+ N++ + LA + + SL+L N L + K L+ ++L +
Sbjct: 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263
Query: 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400
+ + +S + + N + ++ ++ +I
Sbjct: 264 IVKN--------------------------MSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Query: 401 DEGAEKIADALKQ-NRTITTIDLGGNNI-HSKGASAIARVLKDNSVITSLDLAYNPIG 456
+ I++ +++ + L + ++ L + P+
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 2e-32
Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 7/220 (3%)
Query: 166 SVDMSGRNFGDEGLFFLAESL-GYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTL 223
S+++ G + G + L + L ++ N + + L S ++ +L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 224 NLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
+LS N +G + L I V L L L + + L + L+ + L+
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261
Query: 283 NNMIDYSG---FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL-EGNKSLRELHLH 338
+++ +L A I + NG + ++ + E + L
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378
+ + +L + H
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLEHHHHH 361
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 4e-74
Identities = 54/309 (17%), Positives = 110/309 (35%), Gaps = 19/309 (6%)
Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGALGANAL 322
+ + S LR L L + T +A L + ++L G L
Sbjct: 62 QNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL 121
Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
R+L L NS+G E + L L + ++ L + NN ++A G + E
Sbjct: 122 LPVF---LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178
Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
+ S+ ++L +GDEG E +A L +NR + +++ N A A+AR +++
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW---CQIGASGAEFVADMLRYNN 499
+ L L +N + ++G + L ++ + + + + ++++ R N
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298
Query: 500 -----------TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548
+ + DL + AQ + V + ++
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR-VEGEVRALLEQLGSSGSPSGSWS 357
Query: 549 AQALKANED 557
+
Sbjct: 358 HPQFEKGAG 366
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 1e-67
Identities = 68/310 (21%), Positives = 122/310 (39%), Gaps = 19/310 (6%)
Query: 155 NEFAKE-LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGIKAFDG 212
F+ E L + ++++G +A LG + A +EV+ A+ + AG++
Sbjct: 64 QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-- 121
Query: 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLK 271
L + + L L N +G E K L D+L D + L+LS+ L G + E L
Sbjct: 122 -LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180
Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
N+ + L L + + G LA L N ++ L++ N G A ALA+ + S
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240
Query: 332 LRELHLHGNSIGDEGIRALMSGLSSRKG--KLAVLDIGNNSISAKGAFHVAEYIKNCKS- 388
L LHL+ N + EG + L + +G ++ V ++S + ++E +N S
Sbjct: 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSW 300
Query: 389 ----------LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438
LL +L + + A L+ + + + S S
Sbjct: 301 DRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQ 360
Query: 439 LKDNSVITSL 448
+ +
Sbjct: 361 FEKGAGHHHH 370
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 3e-59
Identities = 57/290 (19%), Positives = 106/290 (36%), Gaps = 38/290 (13%)
Query: 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353
+ L + + L + E SLR+L+L G + + +
Sbjct: 42 GRQVLPPSELLDHLFFH------YEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAV 95
Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
L S + L +++ + + G + + L L +N +G E + + D L
Sbjct: 96 LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL---GLQLNSLGPEACKDLRDLLLH 152
Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 473
+ IT+L L+ NP+ A G L E L + ++
Sbjct: 153 D---------------------------QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSV 185
Query: 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
L L +G G E +A L N + L++ NG D A LA++ + + +L +
Sbjct: 186 THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAARE-HPSLELL 244
Query: 534 DLAFNEIRDDGAFAIAQALKANEDVA-VTSLNLANNFLTKFGQSALTDAK 582
L FNE+ +G + A E A V ++++ L++ +
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 4e-33
Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 14/183 (7%)
Query: 168 DMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG 227
+ GDEGL LA L N+ +E++ A NG A + + +L+ L+L
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 228 NPIGDEGVKCLCDILVDNAGVERLQLSSVD---LRDEGAKAIAELLKNNSI--------- 275
N + EG + L D+ G R+ +S + + + + ++E+ +N +
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH 308
Query: 276 --LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
L + +L ++ A+ L +R+L G+ + E
Sbjct: 309 LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHPQFEKGAGHH 368
Query: 334 ELH 336
H
Sbjct: 369 HHH 371
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-39
Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 7/175 (4%)
Query: 387 KSLLWINLYMNDIGD-EGAEKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSV 444
K + + + + E + + + ++L NI A A LK N+
Sbjct: 7 KPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY 66
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
+ + A AL+E+LK + + +L + I SG + + L+ N ++ L
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 505 DLR--ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557
+ + L + +A + N L F + + A+ N D
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQ--GPRLRASNAMMNNND 178
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-37
Identities = 38/210 (18%), Positives = 78/210 (37%), Gaps = 32/210 (15%)
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAE 268
+ V++ + N + + L I ++ +E + L+++ ++ KA AE
Sbjct: 2 LNSVIKPTKYKPVPDEEPNS--TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAE 59
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
LK N+ ++ + + +LAE L N+T++SL++ N+ G AL + L+
Sbjct: 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS 119
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
N SL EL + S + +A ++ +
Sbjct: 120 NTSLIELRIDNQS---------------------------QPLGNNVEMEIANMLEKNTT 152
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTIT 418
LL + G ++A+ N +
Sbjct: 153 LLKFGYHFTQQGPRLR--ASNAMMNNNDLV 180
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 4e-37
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 3/144 (2%)
Query: 380 AEYIKNCKSLLWINLY-MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438
N L +NL + +I + A+ALK N + + G + A A+A +
Sbjct: 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88
Query: 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC--QIGASGAEFVADMLR 496
LK N+ + SL++ N I G AL E L+ + ++ L++ +G + +A+ML
Sbjct: 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148
Query: 497 YNNTISILDLRANGLRDEGAKCLA 520
N T+ A
Sbjct: 149 KNTTLLKFGYHFTQQGPRLRASNA 172
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-34
Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 5/175 (2%)
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKS 388
K + + + + + + L +++ N +I AE +K
Sbjct: 7 KPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY 66
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
+ ++ D A +A+ LK N T+ ++++ N I G A+ L+ N+ + L
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 449 DLA--YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501
+ P+G + ++ +L+ + + + Q G ++ + NN +
Sbjct: 127 RIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNNDL 179
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-32
Identities = 26/156 (16%), Positives = 61/156 (39%), Gaps = 8/156 (5%)
Query: 429 SKGASAIARVLKDNSVITSLDLA-YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487
+ + R+ ++ + ++L I KA +E LK + + + +
Sbjct: 22 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV 81
Query: 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFN--EIRDDGA 545
A +A+ML+ NNT+ L++ +N + G L ++ + N +L + + + ++
Sbjct: 82 AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVE 140
Query: 546 FAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
IA L+ N + + ++A
Sbjct: 141 MEIANMLEKNT--TLLKFGYHFTQQG--PRLRASNA 172
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-30
Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 31/168 (18%)
Query: 182 LAESLGYNQTAEEVSFA-ANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240
L + EEV+ I +KA L++N +K ++ G
Sbjct: 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--------- 78
Query: 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300
D A A+AE+LK N+ L+ L + +N I SG +L EAL
Sbjct: 79 -------------------DPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS 119
Query: 301 NSTIRSLHL--NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346
N+++ L + G +A LE N +L + H G
Sbjct: 120 NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 7e-29
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 5/160 (3%)
Query: 151 KQTLNEFAKELRAFSSVDMSGRN-FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKA 209
++TL V+++ L AE+L N ++ S A
Sbjct: 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA 84
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLS--SVDLRDEGAKAIA 267
+L+ N LK+LN+ N I G+ L + L N + L++ S L + IA
Sbjct: 85 LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144
Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
+L+ N+ L + + A++ N+ +
Sbjct: 145 NMLEKNTTLLKFGYHFTQQG--PRLRASNAMMNNNDLVRK 182
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 7e-31
Identities = 31/219 (14%), Positives = 79/219 (36%), Gaps = 31/219 (14%)
Query: 209 AFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSV-DLRDEGAKAIA 267
F+G++QS + + N E C+ + D+ ++ + ++++ + E +++
Sbjct: 6 TFNGIMQSYVPRIVPDEPDNDTDVE--SCINRLREDDTDLKEVNINNMKRVSKERIRSLI 63
Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
E N+ + L N I S L E + + ++R L++ N+ L +
Sbjct: 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTL 123
Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
+S+ E + + + + I+ +
Sbjct: 124 VTQSIVEFKADNQRQ--------------------------SVLGNQVEMDMMMAIEENE 157
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
SLL + + + ++++AL++N + G +
Sbjct: 158 SLLRVGISFASME--ARHRVSEALERNYERVRLRRLGKD 194
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 1e-29
Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 208 KAFDGVLQSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
+ + + + LK +N++ + E ++ L + ++ +E+ L++ + D A+ +
Sbjct: 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 90
Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG---ANALA 323
EL++ + LRVL + +N + L + L +I + LG +
Sbjct: 91 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150
Query: 324 KGLEGNKSLRELHLHGNSIG 343
+E N+SL + + S+
Sbjct: 151 MAIEENESLLRVGISFASME 170
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-27
Identities = 19/158 (12%), Positives = 58/158 (36%), Gaps = 7/158 (4%)
Query: 404 AEKIADALKQNRTITTIDL-GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
I + + + +++ + + ++ ++ I LA I A+
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89
Query: 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL---RANGLRDEGAKCL 519
L E+++ ++ L + + + +I R + L ++ +
Sbjct: 90 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557
+ + NE+L + ++F + + +++AL+ N +
Sbjct: 150 MMAIE-ENESLLRVGISFASM--EARHRVSEALERNYE 184
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-26
Identities = 22/185 (11%), Positives = 62/185 (33%), Gaps = 35/185 (18%)
Query: 321 ALAKGLEGNKSLRELHL-HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
+ + E + L+E+++ + + E IR+L
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSL----------------------------- 62
Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439
E N K + +L I D A + + ++ + ++ +++ N + + + + R
Sbjct: 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122
Query: 440 KDNSVITSLDLA---YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496
I + +G + ++ + ++ + + + + A V++ L
Sbjct: 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEARHR--VSEALE 180
Query: 497 YNNTI 501
N
Sbjct: 181 RNYER 185
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 7e-24
Identities = 21/164 (12%), Positives = 61/164 (37%), Gaps = 7/164 (4%)
Query: 182 LAESLGYNQTAEEVSF-AANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240
+ + +EV+ ++ I++ ++ ++ +L+ I D + L +
Sbjct: 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIE 92
Query: 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNN---NMIDYSGFTSLAEA 297
++ + + L + S L E + + + +N +++ + A
Sbjct: 93 LIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA 152
Query: 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSL-RELHLHGN 340
+ EN ++ + ++ A + +++ LE N R L +
Sbjct: 153 IEENESLLRVGISFASMEA--RHRVSEALERNYERVRLRRLGKD 194
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-22
Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)
Query: 172 RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231
+ E + L E+ ++ E+ S A I+ + + +++++ +L+ LN+ N +
Sbjct: 52 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111
Query: 232 DEGVKCLCDILVDNAGVERLQLS---SVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY 288
E + L + + + L ++ + ++ N L L + +
Sbjct: 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESL--LRVGISFASM 169
Query: 289 SGFTSLAEALLENSTI-RSLHLNGN 312
++EAL N R L +
Sbjct: 170 EARHRVSEALERNYERVRLRRLGKD 194
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 2e-22
Identities = 20/139 (14%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 434 AIARVLKDNSVITSLDL-AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492
I R+ +D++ + +++ + + ++L E +I L I S A +
Sbjct: 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 91
Query: 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA---FNEIRDDGAFAIA 549
+++ + ++ +L++ +N L E L +S V +++ + + + +
Sbjct: 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMM 150
Query: 550 QALKANEDVAVTSLNLANN 568
A++ NE ++ + ++
Sbjct: 151 MAIEENE--SLLRVGISFA 167
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 6/124 (4%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTL-- 223
++ D L E + + + ++ +N +T + ++
Sbjct: 74 KFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKA 133
Query: 224 -NLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLEL 281
N + +G++ + + +N + R+ +S E ++E L+ N +R+ L
Sbjct: 134 DNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS--MEARHRVSEALERNYERVRLRRL 191
Query: 282 NNNM 285
+
Sbjct: 192 GKDP 195
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-12
Identities = 14/95 (14%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 488 AEFVADMLRYNNTISILDL-RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546
+ + + + +++ + E + L ++ ++ + LA I D A
Sbjct: 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACN-SKHIEKFSLANTAISDSEAR 88
Query: 547 AIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
+ + ++ + ++ LN+ +NFLT + L +
Sbjct: 89 GLIELIETSP--SLRVLNVESNFLTPELLARLLRS 121
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-25
Identities = 70/453 (15%), Positives = 138/453 (30%), Gaps = 73/453 (16%)
Query: 154 LNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAA-NGITAAGIKAFDG 212
+ E + LR SV D L LA++ + E + +G T G+ +
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD--LETLKLDKCSGFTTDGLLS--- 158
Query: 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272
++ +KTL + + ++ K L ++ N +E L + K + + +N
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218
Query: 273 NSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL-------------- 317
L +++ + +++ GF A L E G +
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278
Query: 318 --GANALAKGLEGNKSLRELHLHG------------------------NSIGDEGIRALM 351
G N + +R+L L N IGD G+ L
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338
Query: 352 SGLS-------SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404
R ++ +S +G +A+ C+ L ++ +Y++DI +E
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---GCQELEYMAVYVSDITNESL 395
Query: 405 EKIADALKQNRTITTIDLGG-----NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459
E I LK + L + G ++ K + G
Sbjct: 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK---LRRFAFYLRQ-GGLT 451
Query: 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
LS + ++ N+ + LG+ G + + L++R +
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP---NLQKLEMRGCCFSERAIAAA 508
Query: 520 AQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552
+L + + G + A
Sbjct: 509 VTKLP----SLRYLWVQGYRASMTGQDLMQMAR 537
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 3e-20
Identities = 46/368 (12%), Positives = 112/368 (30%), Gaps = 48/368 (13%)
Query: 213 VLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLK 271
+ + LK+++ + D + L D+ +E L+L +G +I +
Sbjct: 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD--LETLKLDKCSGFTTDGLLSIVTHCR 164
Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
++ L + + L E N+++ L+ + L +S
Sbjct: 165 K---IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221
Query: 332 LRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
L + + + G + L + + + + ++ K C+ L
Sbjct: 222 LVSVKVGDFEILELVGFFKAAANLE----EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277
Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
+G + Q I +DL + ++ + + + + L+
Sbjct: 278 S------YMGPNEMPILFPFAAQ---IRKLDLLYALLETEDHCTLIQKCPN---LEVLET 325
Query: 451 AYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510
IG G + L++ K + L++ ++
Sbjct: 326 RNV-IGDRGLEVLAQYCK---QLKRLRIERG-----------------ADEQGMEDEEGL 364
Query: 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
+ G LAQ + L + + ++I ++ +I LK D + L+
Sbjct: 365 VSQRGLIALAQGCQ----ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420
Query: 571 TKFGQSAL 578
+ +
Sbjct: 421 DLPLDNGV 428
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 8e-15
Identities = 36/256 (14%), Positives = 84/256 (32%), Gaps = 35/256 (13%)
Query: 175 GDEGLFFLAES--------LGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLS 226
GD GL LA+ + + + ++ G+ A + Q L+ + +
Sbjct: 330 GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA---LAQGCQELEYMAVY 386
Query: 227 GNPIGDEGVKCLCDILVDNAGVERLQLSSVD--------LRDEGAKAIAELLKNNSILRV 278
+ I +E ++ + L + +L +D D G +++ K
Sbjct: 387 VSDITNESLESIGTYL---KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443
Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
+ D G + + + +R + L G ++G +L++L +
Sbjct: 444 YLRQGGLTD-LGLSYIGQYS---PNVRWMLLGYVGESDEGLMEFSRGC---PNLQKLEMR 496
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL-YMN 397
G + I A ++ L L L + S G + + ++ I +
Sbjct: 497 GCCFSERAIAAAVTKLP----SLRYLWVQGYRASMTGQDLMQMA-RPYWNIELIPSRRVP 551
Query: 398 DIGDEGAEKIADALKQ 413
++ +G + +
Sbjct: 552 EVNQQGEIREMEHPAH 567
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 1e-13
Identities = 37/321 (11%), Positives = 90/321 (28%), Gaps = 41/321 (12%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
++ V + L + LR L+L G A
Sbjct: 47 IDSETREHVTMALCYTATPDRLSRRFPNLRSLKL-------KGKPRAA----------MF 89
Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI- 366
+L G + + + L+ +H + D + L +R L L +
Sbjct: 90 NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL---AKARADDLETLKLD 146
Query: 367 GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426
+ + G + +C+ + + + + ++ + + + + N ++ ++
Sbjct: 147 KCSGFTTDGLLSIV---THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
Query: 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486
+ + ++ + S+ + I K N+ G
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVG-----FFKAAANLEEFCGGSLNED-- 256
Query: 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546
+ +Y N + L GL G + F + +DL + + +
Sbjct: 257 ----IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP-FAAQIRKLDLLYALLETEDHC 311
Query: 547 AIAQALKANEDVAVTSLNLAN 567
+ Q + L N
Sbjct: 312 TLIQKCP-----NLEVLETRN 327
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 71/420 (16%), Positives = 141/420 (33%), Gaps = 75/420 (17%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ + F N I + + +LNL+GN I + D+A + L
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNGNDI-----AGIEPGAFDSAVFQSLN 208
Query: 253 LSSVDLRDEGAKAIAELLKNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
I + LKN++I L + + + L ++ S++L
Sbjct: 209 FGGTQNLLV----IFKGLKNSTIQSLWLGTFEDMDD--EDISPAVFEGLCEMSVESINLQ 262
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
+Y + +N L+EL L + + + + GLS+ L L + N
Sbjct: 263 KHYFFNISSNTFH----CFSGLQELDLTATHL--SELPSGLVGLST----LKKLVLSANK 312
Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
+ + N SL +++ N E L+ + +DL ++I
Sbjct: 313 FENLCQISA------SNFPSLTHLSIKGNTK---RLELGTGCLENLENLRELDLSHDDIE 363
Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGN----------- 472
+ + L++ S + SL+L+YN + +A E+L
Sbjct: 364 TSDCCNLQ--LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 473 -----INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 527
+ L L + + + L+L+ N + S + +
Sbjct: 422 QNLHLLKVLNLSHSLL----DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN-SLQTL- 475
Query: 528 EALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLV 585
L + L+F ++ D AF + + ++L++N LT AL+ K +
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMN--------HVDLSHNRLTSSSIEALSHLKGIY 527
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 71/407 (17%), Positives = 134/407 (32%), Gaps = 77/407 (18%)
Query: 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ---LSSVDLRDEGA 263
I + + ++LN G K L N+ ++ L +D D
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL-----KNSTIQSLWLGTFEDMDDEDISP 245
Query: 264 KAIAEL---------LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLEN 301
L L+ + L+ L+L + + L L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-----SELPSGLVGL 300
Query: 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
ST++ L L+ N L + + SL L + GN+ E + L + L
Sbjct: 301 STLKKLVLSANKFENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLENLEN----L 352
Query: 362 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
LD+ ++ I ++ ++N L +NL N+ +A K+ + +D
Sbjct: 353 RELDLSHDDIETSDCCNLQ--LRNLSHLQSLNLSYNEPLSL----KTEAFKECPQLELLD 406
Query: 422 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTLKLG 479
L + K A + ++ ++ L+L+++ + SE L F G + L L
Sbjct: 407 LAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLL-----DISSEQL-FDGLPALQHLNLQ 457
Query: 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
G + L+ + IL L L + + +DL+ N
Sbjct: 458 GNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDLSHNR 511
Query: 540 IR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
+ A + + + LNLA+N ++ S L
Sbjct: 512 LTSSSIEALSHLKGIY---------LNLASNHISIILPSLLPILSQQ 549
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 72/423 (17%), Positives = 124/423 (29%), Gaps = 90/423 (21%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL- 269
+ QS L TL L+ NP+ L ++ L + +
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSG----PKALKHLFFIQTGISSIDFIPLHNQK 129
Query: 270 ------LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
L +N I L+VL+ NN I + + L+ +T SL+LN
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLN 187
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNN 369
GN + A + + L+ G + L S + S L + +
Sbjct: 188 GNDIAGIEPGAFD-----SAVFQSLNFGGTQNLLVIFKGLKNSTIQS----LWLGTFEDM 238
Query: 370 SISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
F + S+ INL + + ++ + +DL ++
Sbjct: 239 DDEDISPAVFEGLCEM----SVESINLQKHYFFNI----SSNTFHCFSGLQELDLTATHL 290
Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGN---------- 472
S + L S + L L+ N + S L GN
Sbjct: 291 -----SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345
Query: 473 ------INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVV 526
+ L L I S + LR + + L+L N + +
Sbjct: 346 LENLENLRELDLSHDDIETS--DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC---- 399
Query: 527 NEALTSIDLAFNEIR---DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 583
L +DLAF ++ F L LNL+++ L +
Sbjct: 400 -PQLELLDLAFTRLKVKDAQSPFQNLHLL--------KVLNLSHSLLDISSEQLFDGLPA 450
Query: 584 LVY 586
L +
Sbjct: 451 LQH 453
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-13
Identities = 54/343 (15%), Positives = 102/343 (29%), Gaps = 52/343 (15%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL-AEALLENSTIRS 306
E L+ S L + L+ L L+L I + + + +
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLIN----LTFLDLTRCQI-----YWIHEDTFQSQHRLDT 85
Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI 366
L L N + AL+ G K+L+ L I L + L L +
Sbjct: 86 LVLTANPLIFMAETALS----GPKALKHLFFIQTGISSIDFIPL-HNQKT----LESLYL 136
Query: 367 GNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424
G+N IS+ + L ++ N I E ++ Q T +++L G
Sbjct: 137 GSNHISSIKLPKGF------PTEKLKVLDFQNNAIHYLSKEDMSSL--QQATNLSLNLNG 188
Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484
N+I + I D++V SL+ K L ++
Sbjct: 189 NDI-----AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQ-SLWLGTFEDMDDE 241
Query: 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-D 543
+ ++ ++L+ + + + L +DL + +
Sbjct: 242 DISPAVFEGL--CEMSVESINLQKHYFFNISSNTFHCF-----SGLQELDLTATHLSELP 294
Query: 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
LK L L+ N Q + ++ L +
Sbjct: 295 SGLVGLSTLK--------KLVLSANKFENLCQISASNFPSLTH 329
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 8e-13
Identities = 49/365 (13%), Positives = 107/365 (29%), Gaps = 57/365 (15%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L L+L+ I D ++ L L++ L L L+ L
Sbjct: 59 LTFLDLTRCQIYWIHE----DTFQSQHRLDTLVLTANPLIF----MAETALSGPKALKHL 110
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
I +S+ L N + SL+L N+ ++ + L+ L
Sbjct: 111 FFIQTGI-----SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF----PTEKLKVLDFQ 161
Query: 339 GNSIGDEGIRA-LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
N+I + MS L L++ N I+ + + +N
Sbjct: 162 NNAI--HYLSKEDMSSLQQA--TNLSLNLNGNDIA-----GIEPGAFDSAVFQSLNFGGT 212
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ + ++ +++ + + + + + + S++L +
Sbjct: 213 QNLLVIFKGLKNS--TIQSLWLGTFEDMDDEDISPAVFEGLCEMS--VESINLQKHYFFN 268
Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
+ + L L + + L +T+ L L AN +
Sbjct: 269 ISSNTFHC----FSGLQELDLTATHL-----SELPSGLVGLSTLKKLVLSANKFENLCQI 319
Query: 518 CLAQSFKVVNEALTSIDLAFNEIR---DDGAFAIAQALKANEDVAVTSLNLANNFLTKFG 574
+ +LT + + N R G + L+ L+L+++ +
Sbjct: 320 SASN-----FPSLTHLSIKGNTKRLELGTGCLENLENLR--------ELDLSHDDIETSD 366
Query: 575 QSALT 579
L
Sbjct: 367 CCNLQ 371
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 32/248 (12%)
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
G L++ L+ L+LS + I E C L + + ++ L LS + +A E
Sbjct: 342 GTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ L +L+L + S ++ L+L+ + G
Sbjct: 400 PQ----LELLDLAFTRLKVKDAQS---PFQNLHLLKVLNLSHSLLDISSEQLFD----GL 448
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCK 387
+L+ L+L GN + G+L +L + +S+ + AF + K
Sbjct: 449 PALQHLNLQGNHF--PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT------SLK 500
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
+ ++L N + + + ++L N+I S L S +
Sbjct: 501 MMNHVDLSHNRL-----TSSSIEALSHLKGIYLNLASNHISIILPSL----LPILSQQRT 551
Query: 448 LDLAYNPI 455
++L NP+
Sbjct: 552 INLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 30/230 (13%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
+ I + L++ L++LNLS N + + +E L L+ L+
Sbjct: 360 DDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLK 413
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALG 318
+ A++ + L L+VL L+++++ +E L + ++ L+L GN+
Sbjct: 414 VKDAQSPFQNLHL---LKVLNLSHSLL-----DISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378
L+ L L L + A + L + +D+ +N ++
Sbjct: 466 IQKTN-SLQTLGRLEILVLSFCDLSSIDQHAF-TSLKM----MNHVDLSHNRLT-----S 514
Query: 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
+ + +++NL N I + + L TI+L N +
Sbjct: 515 SSIEALSHLKGIYLNLASNHI----SIILPSLLPILSQQRTINLRQNPLD 560
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 45/314 (14%), Positives = 79/314 (25%), Gaps = 50/314 (15%)
Query: 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
+ N G + L + L + N + + +L L
Sbjct: 15 KTYNCENL-----GLNEIPGTLPNS--TECLEFSFNVLPTIQNTTFS----RLINLTFLD 63
Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINL 394
L I L L + N + A+ A K+L +
Sbjct: 64 LTRCQIYWIHEDTF-QSQHR----LDTLVLTANPLIFMAETAL------SGPKALKHLFF 112
Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
I + L +T+ ++ LG N+I S + LD N
Sbjct: 113 IQTGI----SSIDFIPLHNQKTLESLYLGSNHIS----SIKLPKGFPTEKLKVLDFQNNA 164
Query: 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514
I + +S L+ +L L I + + L+
Sbjct: 165 IHYLSKEDMS-SLQ-QATNLSLNLNGNDI-----AGIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 515 GAKCLAQSFKVVNEALTSIDLAFNEIRD--DGAFAIAQALKANEDVAVTSLNLANNFLTK 572
K L S ++L + D F + V S+NL ++
Sbjct: 218 IFKGLKNS---TIQSLWLGTFEDMDDEDISPAVFEGLCEMS------VESINLQKHYFFN 268
Query: 573 FGQSALTDAKDLVY 586
+ L
Sbjct: 269 ISSNTFHCFSGLQE 282
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 7e-22
Identities = 69/451 (15%), Positives = 145/451 (32%), Gaps = 70/451 (15%)
Query: 153 TLNEFAKELRAFSSVDMSG-RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFD 211
L AK + F + +S F +GL +A + + +E+ + +
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC---RNLKELDLRESDVDDVSGHWLS 177
Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL-----QLSSVDLRD-EGAKA 265
+ +L +LN+S V + +ERL L S+ L +
Sbjct: 178 HFPDTYTSLVSLNISC-----------LASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226
Query: 266 IAELLKNNSILRVLELN--NNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 323
+A LL+ L L + ++ L+ AL +R L + L
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD----AVPAYLP 282
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
L L+L ++ + L+ KL L + + I G +A
Sbjct: 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP----KLQRLWVLDY-IEDAGLEVLA--- 334
Query: 384 KNCKSLLWINLYMND---------IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434
CK L + ++ ++ + ++G ++ + + ++ + +
Sbjct: 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK---LESVLYFCRQMTNAALIT 391
Query: 435 IARVLKDNSVITSLDLAY-NPIGADGA------KALSEVLKFHGNINTLKLGWCQIGASG 487
IAR + +T L P D +++ ++ L L +
Sbjct: 392 IARNRPN---MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKV 447
Query: 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547
E++ Y + +L + G D G + +L +++ D A
Sbjct: 448 FEYIG---TYAKKMEMLSVAFAGDSDLGMHHVLSGCD----SLRKLEIRDCPFGDKALLA 500
Query: 548 IAQALKANEDVAVTSLNLANNFLTKFGQSAL 578
A L+ + SL +++ ++ L
Sbjct: 501 NASKLE-----TMRSLWMSSCSVSFGACKLL 526
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 6e-20
Identities = 55/384 (14%), Positives = 128/384 (33%), Gaps = 38/384 (9%)
Query: 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244
L + + +G + + S L+ + L + D+ ++ +
Sbjct: 72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSF-- 129
Query: 245 NAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303
+ L LSS + +G AIA +N L+ L+L + +D L+ ++
Sbjct: 130 -KNFKVLVLSSCEGFSTDGLAAIAATCRN---LKELDLRESDVDDVSGHWLSHFPDTYTS 185
Query: 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363
+ SL+++ + +AL + + +L+ L L+ ++ E + L+ L
Sbjct: 186 LVSLNISC-LASEVSFSALERLVTRCPNLKSLKLNR-AVPLEKLATLLQRAPQ----LEE 239
Query: 364 LDIG--NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
L G + ++ + CK L ++ D + + +TT++
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSR---LTTLN 295
Query: 422 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481
L + S + + L + I G + L+ K ++ L++
Sbjct: 296 LSYATVQSYDLVKLLCQCPK---LQRLWVLDY-IEDAGLEVLASTCK---DLRELRVFPS 348
Query: 482 QIGASGAEF------VADMLRYNNTISILDLRANGLRDEGAKCLAQS------FKVVNEA 529
+ + + + + + + +A++ F++
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408
Query: 530 LTSIDLAFNEIRDDGAFAIAQALK 553
+ D E D G AI + K
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCK 432
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 4e-17
Identities = 46/385 (11%), Positives = 104/385 (27%), Gaps = 61/385 (15%)
Query: 145 KLFRESKQTLNEFAKELRAFSSVDMSG--RNFGDEGLFFLAE--------SLGYNQTAEE 194
+ S L+ F + S+++S L L L E+
Sbjct: 167 DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226
Query: 195 VSFAANG---------------ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239
++ + L L+ L+ + + +
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD-AVPAYLPAVY 285
Query: 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALL 299
+ + + L LS ++ + L+ L + + + D +G LA
Sbjct: 286 SVC---SRLTTLNLSYATVQSYDLVKLLCQCPK---LQRLWVLDYIED-AGLEVLASTC- 337
Query: 300 ENSTIRSLHLNG------NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353
+R L + AL L G L + + + + +
Sbjct: 338 --KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395
Query: 354 LSS------RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407
+ + D G + ++CK L ++L + D+ E I
Sbjct: 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV---EHCKDLRRLSLSGL-LTDKVFEYI 451
Query: 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467
K+ + + + G + + L++ P G A + L
Sbjct: 452 GTYAKK---MEMLSVAFAGDSDLGMHHVLSGCDS---LRKLEIRDCPFGDKALLANASKL 505
Query: 468 KFHGNINTLKLGWCQIGASGAEFVA 492
+ + +L + C + + +
Sbjct: 506 E---TMRSLWMSSCSVSFGACKLLG 527
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 38/326 (11%), Positives = 97/326 (29%), Gaps = 44/326 (13%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
+ER V + + A + A +++ +R +EL G A+ L
Sbjct: 40 IERWCRRKVFIGNCYAVSPATVIRRFPKVRSVEL-------KGKPHFADFNLVPDGW--- 89
Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
G + L E+ L + D+ + + + VL +
Sbjct: 90 -------GGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKN----FKVLVLS 138
Query: 368 N-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG-- 424
+ S G +A C++L ++L +D+ D ++ ++ ++++
Sbjct: 139 SCEGFSTDGLAAIA---ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195
Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484
+ + + + + SL L L+ +L+ + L G
Sbjct: 196 SEVSFSALERLVTRCPN---LKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAE 248
Query: 485 ASGAEFVADMLRYNNTISILDLR-ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
+ + + + L + LT+++L++ ++
Sbjct: 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS----RLTTLNLSYATVQSY 304
Query: 544 GAFAIAQALKANEDVAVTSLNLANNF 569
+ + L + +
Sbjct: 305 DLVKLLCQCP-----KLQRLWVLDYI 325
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 4e-14
Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 50/294 (17%)
Query: 139 LSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFA 198
LSGF L +++++S L L + +
Sbjct: 270 LSGFWDA----VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC----PKLQRLWV 321
Query: 199 ANGITAAGIKAFDGVLQSNIALKTLNLSG---------NPIGDEGVKCLCDILVDNAGVE 249
+ I AG++ + + L+ L + + ++G+ + G
Sbjct: 322 LDYIEDAGLEV---LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM------GCP 372
Query: 250 RLQ---LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDY-------SGFTSLAEALL 299
+L+ + + IA N + R+ + DY GF ++ E
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC- 431
Query: 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG 359
+R L L+G + K + L + D G+ ++SG S
Sbjct: 432 --KDLRRLSLSGLLTDK-VFEYIGTYA---KKMEMLSVAFAGDSDLGMHHVLSGCDS--- 482
Query: 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
L L+I + K A +++ + + + + + + +
Sbjct: 483 -LRKLEIRDCPFGDKALLANA---SKLETMRSLWMSSCSVSFGACKLLGQKMPK 532
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 93.1 bits (230), Expect = 1e-20
Identities = 23/201 (11%), Positives = 64/201 (31%), Gaps = 10/201 (4%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
++ I + L+ L + +L + G ++G L+ L
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN-------LKSL 198
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN--CKSLLWIN 393
+ + D + ++ KL + + +L W+
Sbjct: 199 EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258
Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
+ + + E ++ + T+D+ + +GA + + + +++ YN
Sbjct: 259 IVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317
Query: 454 PIGADGAKALSEVLKFHGNIN 474
+ + K L + L +++
Sbjct: 318 YLSDEMKKELQKSLPMKIDVS 338
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 89.2 bits (220), Expect = 2e-19
Identities = 27/209 (12%), Positives = 65/209 (31%), Gaps = 17/209 (8%)
Query: 266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
++ +L +L L++ +L+ ++SL + +
Sbjct: 164 LSPVLDAMPLLNNLKIKGT-------NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216
Query: 326 LEGNKSLRELHLHG---NSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAE 381
+L +L L+ + D + S R L L I + E
Sbjct: 217 D--LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE 274
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
L +++ + DEGA + D + + + + I++ N + + + + L
Sbjct: 275 -SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPM 333
Query: 442 NSVITSLDLAYNPIGADGAKALSEVLKFH 470
+ + ++E+ H
Sbjct: 334 K---IDVSDSQEYDDDYSYPMITELEHHH 359
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 85.4 bits (210), Expect = 4e-18
Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 8/146 (5%)
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQL---SSVDLRDEGAKAIAELL 270
+ LK+L + + D V+ + + N +E+L L D L
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPN--LEKLVLYVGVEDYGFDGDMNVFRPLF 246
Query: 271 KNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
+ L+ L + + E+ + + ++ ++ GA L ++
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDK 305
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGL 354
K L+ +++ N + DE + L L
Sbjct: 306 IKHLKFINMKYNYLSDEMKKELQKSL 331
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 64.2 bits (155), Expect = 3e-11
Identities = 22/173 (12%), Positives = 63/173 (36%), Gaps = 11/173 (6%)
Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC--- 481
NN+ KG + ++ K + SL++ + + + N+ L L
Sbjct: 175 NNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLP--NLEKLVLYVGVED 232
Query: 482 QIGASGAEFVADMLRYNN--TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
+ + + L + ++ + +S + L ++D++
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD--ILPQLETMDISAGV 290
Query: 540 IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYEMSEKE 592
+ D+GA + + + + +N+ N+L+ + L + + ++S+ +
Sbjct: 291 LTDEGARLLLDHVDKIK--HLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 9e-07
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 4/112 (3%)
Query: 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN 217
+ + + + ES E + +A +T G + +
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESD-ILPQLETMDISAGVLTDEGARLLLDHVDKI 306
Query: 218 IALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
LK +N+ N + DE K L L V Q D I EL
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ---EYDDDYSYPMITEL 355
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 56/380 (14%), Positives = 129/380 (33%), Gaps = 51/380 (13%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN-AGVERLQLSSVDLRDEGAKAIAEL 269
L+S + L L + L +I D + V L+L +L + +
Sbjct: 165 SQSLKSIRDIHHLTLHLSES-----AFLLEIFADILSSVRYLELRDTNLARFQFSPLP-V 218
Query: 270 LKNNSILRVLELNNNMI---DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326
+ +S ++ L +++ ++ L +LE S + N G + +
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV-V 277
Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIK 384
+ + + I + +S + S K+ + + N+ + +
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS------Q 331
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
+ KSL +++L N + +E + + ++ T+ L N++ S +L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKN 388
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
+TSLD++ N + + ++ + L L I + + T+ +L
Sbjct: 389 LTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGI----RVVKTCIPQ---TLEVL 436
Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
D+ N L SF + L + ++ N+++ ++ L +
Sbjct: 437 DVSNNNL---------DSFSLFLPRLQELYISRNKLKTLPDASLFPVLL--------VMK 479
Query: 565 LANNFLTKFGQSALTDAKDL 584
++ N L L
Sbjct: 480 ISRNQLKSVPDGIFDRLTSL 499
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 51/375 (13%), Positives = 116/375 (30%), Gaps = 51/375 (13%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
S +L+ L+LS N + + ++ L L + G ++ L
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLS----SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 271 KNNSILRVLEL-NNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEG 328
N L+ L + N + + T + L + + + L+
Sbjct: 123 TN---LQTLRIGNVETF-----SEIRRIDFAGLTSLNELEIKALSLRNYQSQS----LKS 170
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNC 386
+ + L LH + L+ + + L++ + +++ V E
Sbjct: 171 IRDIHHLTLHLSE-----SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV-- 444
K L + + D K+ + + + D N + S V + V
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285
Query: 445 --ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 502
I L + + D + S + + + + ++ ++ ++
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLL----EKVKRITVENSKVF----LVPCSFSQHLKSLE 337
Query: 503 ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI----RDDGAFAIAQALKANEDV 558
LDL N + +E + K +L ++ L+ N + + + L
Sbjct: 338 FLDLSENLMVEEY--LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL------ 389
Query: 559 AVTSLNLANNFLTKF 573
TSL+++ N
Sbjct: 390 --TSLDISRNTFHPM 402
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 55/352 (15%), Positives = 116/352 (32%), Gaps = 54/352 (15%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL-AEALLENSTIRS 306
++ L LS + G + L+VL L ++ I ++ +A ++
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACAN----LQVLILKSSRI-----NTIEGDAFYSLGSLEH 78
Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI 366
L L+ N+ +L ++ SL+ L+L GN G+ +L L++ L L I
Sbjct: 79 LDLSDNHLSSLSSSWFG----PLSSLKYLNLMGNPYQTLGVTSLFPNLTN----LQTLRI 130
Query: 367 G-NNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDL 422
G + S + F SL + + + + +LK R I + L
Sbjct: 131 GNVETFSEIRRIDF------AGLTSLNELEIKALSL-----RNYQSQSLKSIRDIHHLTL 179
Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482
+ + S + L+L + L V + + L
Sbjct: 180 HLSESA----FLLEIFADILSSVRYLELRDTNLARFQFSPLP-VDEVSSPMKKLAFRGSV 234
Query: 483 IGASGAEFVADMLRY---NNTISILDLRANGL---RDEGAKCLAQSFKVVNEALTSIDLA 536
+ + +LRY + + D NGL + +++ KV + + +
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294
Query: 537 FNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
+ +++ + + + + N+ + S K L +
Sbjct: 295 QFYLFYDLSTVYSLLEKV--------KRITVENSKVFLVPCSFSQHLKSLEF 338
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 34/221 (15%), Positives = 69/221 (31%), Gaps = 40/221 (18%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
Q +L+ L+LS N + +E + ++ L LS LR E+L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYL-KNSACKGAWPSLQTLVLSQNHLRSMQK--TGEIL 383
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
L L+++ N + ++ +R L+L+ + +
Sbjct: 384 LTLKNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP-------Q 431
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
+L L + N++ + L L L I N + +
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPR----LQELYISRNKLKTLPDASLF--------PV 474
Query: 389 LLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
LL + + N + + + + ++ I L N
Sbjct: 475 LLVMKISRNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 31/197 (15%)
Query: 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI 218
+ L++ +D+S N E + G + + + + N + + ++ +L +
Sbjct: 331 QHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLK 387
Query: 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS---VDLRDEGAKAIAEL-LKNNS 274
L +L++S N + D + L LSS ++ + + L + NN+
Sbjct: 388 NLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442
Query: 275 I---------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
+ L+ L ++ N + +L +A L + + ++ N ++
Sbjct: 443 LDSFSLFLPRLQELYISRNKL-----KTLPDASLFPV-LLVMKISRNQLKSVPDGI---- 492
Query: 326 LEGNKSLRELHLHGNSI 342
+ SL+++ LH N
Sbjct: 493 FDRLTSLQKIWLHTNPW 509
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 3e-19
Identities = 69/401 (17%), Positives = 134/401 (33%), Gaps = 68/401 (16%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQS--NIALKTLNLSGNPIGDEGVKCLCD--------IL 242
S AAN + + + + N+ L+ L++SGN + + L
Sbjct: 177 SFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236
Query: 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS 302
+ + +++D A L +++ +R L+L++ + SL + E
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRHLDLSHGFV-----FSLNSRVFETL 289
Query: 303 T-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
++ L+L N + A G +L+ L+L N +G+ GL +
Sbjct: 290 KDLKVLNLAYNKINKIADEAF----YGLDNLQVLNLSYNLLGELYSSNF-YGLPK----V 340
Query: 362 AVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITT 419
A +D+ N I+ F + L ++L N + + +I
Sbjct: 341 AYIDLQKNHIAIIQDQTFK------FLEKLQTLDLRDNALTT---------IHFIPSIPD 385
Query: 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479
I L GN + + + K N + L+ N + + ++ L L
Sbjct: 386 IFLSGNKLVT--------LPKINLTANLIHLSENRLENLDILYFLLRVP---HLQILILN 434
Query: 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE 539
+ + + ++ L L N L+ L L + L N
Sbjct: 435 QNRFSSCSGDQTPSENP---SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491
Query: 540 IR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578
+ G F+ AL+ L+L +N LT + L
Sbjct: 492 LNSLPPGVFSHLTALR--------GLSLNSNRLTVLSHNDL 524
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 7e-16
Identities = 68/417 (16%), Positives = 134/417 (32%), Gaps = 57/417 (13%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ + N I + + +LK+++ S N I L + +
Sbjct: 126 TRLDLSKNQIRSLYL---HPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFS 180
Query: 253 LSSVDLRDEGAKAIAELLKN--NSILRVLELNNNMIDY-------SGFTSL-AEALLENS 302
L++ L + + + N +L +L+++ N + + A +L+
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
I + N GL S+R L L + +L S + L
Sbjct: 241 HIMGAGFGFHNIKDPDQNTF-AGLA-RSSVRHLDLSHGF-----VFSLNSRVFETLKDLK 293
Query: 363 VLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
VL++ N I+ A AF+ +L +NL N +G E + + I
Sbjct: 294 VLNLAYNKINKIADEAFY------GLDNLQVLNLSYNLLG----ELYSSNFYGLPKVAYI 343
Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA-DGAKALSEVLKFHGNI------ 473
DL N+I + K + +LDL N + ++ ++ +
Sbjct: 344 DLQKNHIAIIQDQTFKFLEK----LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399
Query: 474 ----NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEA 529
N + L ++ + + +LR + + IL L N C N +
Sbjct: 400 NLTANLIHLSENRL--ENLDILYFLLRVPH-LQILILNQNRFSS----CSGDQTPSENPS 452
Query: 530 LTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
L + L N ++ + + + L L +N+L + L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTALRG 508
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 58/383 (15%), Positives = 111/383 (28%), Gaps = 58/383 (15%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ L LS N I +E+LQL + + E +N LR+L
Sbjct: 26 TERLLLSFNYIRTVTASSF-------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKG-LEGNKSLRELHL 337
+L ++ I L + + L L L L G K+L L L
Sbjct: 79 DLGSSKI-----YFLHPDAFQGLFHLFELRLYFCG---LSDAVLKDGYFRNLKALTRLDL 130
Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLY 395
N I + L+S L +D +N I + + K+L + +L
Sbjct: 131 SKNQIRSLYLHPSFGKLNS----LKSIDFSSNQIFLVCEHELEPLQG----KTLSFFSLA 182
Query: 396 MNDIG--DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR--------VLKDNSVI 445
N + +N + +D+ GN + L I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242
Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505
++ I + + ++ L L + + + + +L+
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGL--ARSSVRHLDLSHGFV----FSLNSRVFETLKDLKVLN 296
Query: 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSL 563
L N + +A + L ++L++N + F + +
Sbjct: 297 LAYNKINK-----IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA--------YI 343
Query: 564 NLANNFLTKFGQSALTDAKDLVY 586
+L N + + L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQT 366
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 2e-15
Identities = 63/417 (15%), Positives = 113/417 (27%), Gaps = 84/417 (20%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
Q L L L + D +K + + RL LS +R L
Sbjct: 90 PDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG-- 328
+ L+ ++ ++N I L L+ T+ L N + + K +
Sbjct: 148 NS---LKSIDFSSNQIFLVCEHELEP--LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSS-------------------------------- 356
N L L + GN + + +S
Sbjct: 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262
Query: 357 -RKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA-DALK 412
+ + LD+ + + + F K L +NL N I KIA +A
Sbjct: 263 LARSSVRHLDLSHGFVFSLNSRVFE------TLKDLKVLNLAYNKI-----NKIADEAFY 311
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
+ ++L N + + + +DL N I + +
Sbjct: 312 GLDNLQVLNLSYNLLG----ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL----EK 363
Query: 473 INTLKLGWCQIGA-SGAEFVAD-MLRYNNTISI---------LDLRANGLRDEGAKCLAQ 521
+ TL L + + D L N +++ + L N L +
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578
L + L N ++ L L N L ++ L
Sbjct: 424 RVP----HLQILILNQNRFSSCSGDQTPSENP-----SLEQLFLGENMLQLAWETEL 471
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 63/368 (17%), Positives = 127/368 (34%), Gaps = 61/368 (16%)
Query: 211 DGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
++ L+ L+L + I + L+L L D K
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDA------FQGLFHLFELRLYFCGLSDAVLK--DG 117
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
+N L L+L+ N I L + + ++++S+ + N + + L + L+
Sbjct: 118 YFRNLKALTRLDLSKNQIRS---LYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQ- 172
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNCK 387
K+L L NS+ ++ + L +LD+ N
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW---------------- 216
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
++ + N I ++ A +L I G +NI + A + + + +
Sbjct: 217 TVDITGNFSNAI----SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS--VRH 270
Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
LDL++ + + S V + ++ L L + +I + + + + +L+L
Sbjct: 271 LDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKI----NKIADEAFYGLDNLQVLNLS 322
Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNL 565
N L + + + IDL N I D F + L+ +L+L
Sbjct: 323 YNLLGELYSSNFYG-----LPKVAYIDLQKNHIAIIQDQTFKFLEKLQ--------TLDL 369
Query: 566 ANNFLTKF 573
+N LT
Sbjct: 370 RDNALTTI 377
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 46/288 (15%), Positives = 83/288 (28%), Gaps = 50/288 (17%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK---GAFH--------- 378
+ L L N IR + + +L +L++G+ AF
Sbjct: 25 TTERLLLSFNY-----IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 379 ---------VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
+ + L + LY + D + + + +T +DL N I S
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRS 137
Query: 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG--ASG 487
L + S+D + N I L L+ ++ L + S
Sbjct: 138 LYLHPSFGKLNS---LKSIDFSSNQIFLVCEHELE-PLQ-GKTLSFFSLAANSLYSRVSV 192
Query: 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVV-------NEALTSIDLAFNEI 540
N + ILD+ NG + + + + F+ I
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252
Query: 541 R--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
+ D F +V L+L++ F+ KDL
Sbjct: 253 KDPDQNTF------AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 59/272 (21%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ ++ A N I +AF G L + L+ LNLS N +G+ V +
Sbjct: 293 KVLNLAYNKINKIADEAFYG-LDN---LQVLNLSYNLLGELY----SSNFYGLPKVAYID 344
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLEL-NNNMIDYSGFTSLAEALLENSTIRS----- 306
L + + L K L+ L+L +N + S+ + L + + +
Sbjct: 345 LQKNHIAIIQDQTFKFLEK----LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 307 -----LHLNGNYGGALGANALAKGL----------------------EGNKSLRELHLHG 339
+HL+ N L + N SL +L L
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMN 397
N + L + L VL + +N +++ G F + +L ++L N
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS------HLTALRGLSLNSN 514
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
+ + L+ +D+ N + +
Sbjct: 515 RLTVLSHNDLPANLE------ILDISRNQLLA 540
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 25/168 (14%)
Query: 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN 474
T + L N I + AS+ + L+L E + N+
Sbjct: 24 NTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLR 76
Query: 475 TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID 534
L LG +I D + + L L GL D L + +ALT +D
Sbjct: 77 ILDLGSSKI----YFLHPDAFQGLFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLD 129
Query: 535 LAFNEIRD---DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 579
L+ N+IR +F +LK S++ ++N + + L
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLK--------SIDFSSNQIFLVCEHELE 169
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 6e-19
Identities = 69/407 (16%), Positives = 124/407 (30%), Gaps = 56/407 (13%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+S + + ++ F G+ +N L L+LS N + G D +E
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSYNNLNVVG----NDSFAWLPQLEYFF 278
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNM----IDYSGFTSLAEALLEN-STIRSL 307
L +++ + ++ L +R L L + I + + + + + L
Sbjct: 279 LEYNNIQHLFSHSLHGLFN----VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDI 366
++ N + +N G +L+ L L + + L+ L +L++
Sbjct: 335 NMEDNDIPGIKSNMFT----GLINLKYLSLSNSFTSLRTLTNETFVSLAHSP--LHILNL 388
Query: 367 GNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGG 424
N IS AF L ++L +N+IG E + I I L
Sbjct: 389 TKNKISKIESDAFS------WLGHLEVLDLGLNEIGQELT---GQEWRGLENIFEIYLSY 439
Query: 425 NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484
N + L L + + + N+ L L I
Sbjct: 440 NKYLQ----LTRNSFALVPSLQRLMLRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNI- 492
Query: 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTS---IDLAFNEIR 541
A DML + ILDL+ N L + L+ ++L N
Sbjct: 493 ---ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549
Query: 542 D--DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
+ F L ++L N L S + L
Sbjct: 550 EIPVEVFKDLFEL--------KIIDLGLNNLNTLPASVFNNQVSLKS 588
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-18
Identities = 67/381 (17%), Positives = 114/381 (29%), Gaps = 54/381 (14%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCD-----ILVDNAGVERLQLSSVDLRDEGAKA 265
+ L+ L N I L L + +S L K
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP----KI 320
Query: 266 IAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAK 324
+ L L + +N I + + ++ L L+ ++
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDI-----PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
+ L L+L N I A S L L VLD+G N I + +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAF-SWLGH----LEVLDLGLNEIGQELTGQE---WR 427
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
+++ I L N ++ ++ + L + + +
Sbjct: 428 GLENIFEIYLSYNKYLQL----TRNSFALVPSLQRLMLRRVALK--NVDSSPSPFQPLRN 481
Query: 445 ITSLDLAYNPIGADGAKALS-----EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499
+T LDL+ N I L E+L N L A+ + L+ +
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHN----NLARLWKHANPGGPI-YFLKGLS 536
Query: 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANED 557
+ IL+L +NG + + F+ L IDL N + F +LK
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFE-----LKIIDLGLNNLNTLPASVFNNQVSLK---- 587
Query: 558 VAVTSLNLANNFLTKFGQSAL 578
SLNL N +T +
Sbjct: 588 ----SLNLQKNLITSVEKKVF 604
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-17
Identities = 56/384 (14%), Positives = 112/384 (29%), Gaps = 48/384 (12%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
+ Q LK LNL N + + L L S ++
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQL----SDKTFAFCTNLTELHLMSNSIQKI----KNNPF 117
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
L L+L++N + +S ++ L L+ N AL + L + N
Sbjct: 118 VKQKNLITLDLSHNGL-----SSTKLGTQVQLENLQELLLSNNKIQALKSEEL--DIFAN 170
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
SL++L L N I + + L L + N + + + N S+
Sbjct: 171 SSLKKLELSSNQIKEFSPGCF-HAIGR----LFGLFLNNVQLGPSLTEKLCLELAN-TSI 224
Query: 390 LWINLYMNDIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
++L + + + +T +DL NN++ +
Sbjct: 225 RNLSLSNSQLSTT----SNTTFLGLKWTNLTMLDLSYNNLN----VVGNDSFAWLPQLEY 276
Query: 448 LDLAYNPIGADGAKALS-----EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTIS 502
L YN I + +L L + + + + ++ +
Sbjct: 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL----PKIDDFSFQWLKCLE 332
Query: 503 ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTS 562
L++ N + + L + L+ + + + +
Sbjct: 333 HLNMEDNDIPGIKSNMFTG-----LINLKYLSLSNSFT--SLRTLTNETFVSLAHSPLHI 385
Query: 563 LNLANNFLTKFGQSALTDAKDLVY 586
LNL N ++K A + L
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEV 409
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 68/381 (17%), Positives = 124/381 (32%), Gaps = 61/381 (16%)
Query: 217 NIALKTLNLSGN-----PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK 271
++ + + S P D+ + + L L+ LR A +
Sbjct: 3 TVSHEVADCSHLKLTQVPD---------DLPTN---ITVLNLTHNQLRRLPAANFTRYSQ 50
Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNK 330
L L++ N I + L L + ++ L+L N L A
Sbjct: 51 ----LTSLDVGFNTI-----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA----FCT 97
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCKS 388
+L ELHL NSI + L LD+ +N +S G ++
Sbjct: 98 NLTELHLMSNSIQKI-KNNPFVKQKN----LITLDLSHNGLSSTKLGTQV------QLEN 146
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L + L N I + + + N ++ ++L N I + + + L
Sbjct: 147 LQELLLSNNKI--QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR----LFGL 200
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
L +G + L L + +I L L Q+ + + N +++LDL
Sbjct: 201 FLNNVQLGPSLTEKLCLELA-NTSIRNLSLSNSQLSTTSNTTFLGLKWTN--LTMLDLSY 257
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKA-NEDVAVTSLNL 565
N L G A + L L +N I+ + ++ N + T ++
Sbjct: 258 NNLNVVGNDSFAWLPQ-----LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 566 ANNFLTKFGQSALTDAKDLVY 586
+ L K + K L +
Sbjct: 313 SLASLPKIDDFSFQWLKCLEH 333
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 46/243 (18%), Positives = 79/243 (32%), Gaps = 35/243 (14%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ L+L N IG E + + LS L+ L
Sbjct: 407 LEVLDLGLNEIGQELTG---QEWRGLENIFEIYLSYNKYLQ----LTRNSFALVPSLQRL 459
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
L + S + L L+ N + + L EG + L L L
Sbjct: 460 MLRRVAL--KNVDSSPSPFQPLRNLTILDLSNNNIANINDDML----EGLEKLEILDLQH 513
Query: 340 NSI-------GDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
N++ G + GLS L +L++ +N E K+ L I
Sbjct: 514 NNLARLWKHANPGGPIYFLKGLSH----LHILNLESNGFD----EIPVEVFKDLFELKII 565
Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
+L +N++ A ++ +++L N I S ++ +T LD+ +
Sbjct: 566 DLGLNNLNTL----PASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRN---LTELDMRF 618
Query: 453 NPI 455
NP
Sbjct: 619 NPF 621
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 28/222 (12%)
Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK 271
+ + + LS N + ++RL L V L++ + +
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTR----NSFALVPSLQRLMLRRVALKNVDS--SPSPFQ 477
Query: 272 NNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG----L 326
L +L+L+NN I ++ + +LE + L L N L +A G L
Sbjct: 478 PLRNLTILDLSNNNI-----ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
+G L L+L N DE + L L ++D+G N+++ A N
Sbjct: 533 KGLSHLHILNLESNGF-DEIPVEVFKDLFE----LKIIDLGLNNLN----TLPASVFNNQ 583
Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
SL +NL N I + A + +T +D+ N
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRN---LTELDMRFNPFD 622
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 17/137 (12%)
Query: 211 DGVLQSNIALKTLNLSGNPI----GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI 266
D +L+ L+ L+L N + L + + L L S +
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI----P 552
Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG 325
E+ K+ L++++L N + +L ++ N +++SL+L N ++
Sbjct: 553 VEVFKDLFELKIIDLGLNNL-----NTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
Query: 326 LEGNKSLRELHLHGNSI 342
++L EL + N
Sbjct: 608 F---RNLTELDMRFNPF 621
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 61/418 (14%), Positives = 122/418 (29%), Gaps = 72/418 (17%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
V + N I + + ++ +L++S NPI + ++
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG----------IK 205
Query: 253 LSSVDLRD--EGAKAIAELLKNNSILRVLELNNNMI-DYSGFTSLAEALLE---NSTIRS 306
L + LR + + L+N + L V L D +++E + TI
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265
Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK-------- 358
L + L ++ + L G SI S
Sbjct: 266 FRLTYTNDFSDDIVKF-HCL---ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321
Query: 359 ------GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
L L + N S SL +++L N + G + +
Sbjct: 322 FPTLDLPFLKSLTLTMNKGSISFKKV------ALPSLSYLDLSRNALSFSGCC--SYSDL 373
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG- 471
++ +DL N ++ + LD ++ + K ++E F
Sbjct: 374 GTNSLRHLDLSFNGAII-----MSANFMGLEELQHLDFQHSTL-----KRVTEFSAFLSL 423
Query: 472 -NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
+ L + + + +++ L + N +D + + L
Sbjct: 424 EKLLYLDISYTNT----KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT----NL 475
Query: 531 TSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
T +DL+ ++ G F L+ LN+++N L S L
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQ--------LLNMSHNNLLFLDSSHYNQLYSLST 525
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 1e-14
Identities = 58/408 (14%), Positives = 121/408 (29%), Gaps = 70/408 (17%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N I +AF I L L L GN +K L AG+ +L + +
Sbjct: 191 NPIDFIQDQAF-----QGIKLHELTLRGNFNSSNIMKTCLQNL---AGLHVHRLILGEFK 242
Query: 260 DEGAKAI--AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317
DE I +++ + + E + + L N + ++ L G L
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN--VSAMSLAGVSIKYL 300
Query: 318 GANALAKGLE---------------GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
+ L+ L L N + + L+
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP-------SLS 353
Query: 363 VLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
LD+ N++S ++ SL ++L N ++ + +
Sbjct: 354 YLDLSRNALSFSGCCSYS----DLGTNSLRHLDLSFNGA-----IIMSANFMGLEELQHL 404
Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480
D + + + + LD++Y D + ++NTLK+
Sbjct: 405 DFQHSTLKRVTEFS---AFLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAG 457
Query: 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540
+ ++++ ++ LDL L + L ++++ N +
Sbjct: 458 NSFKDN---TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR-----LQLLNMSHNNL 509
Query: 541 R--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
D + +L ++L+ + N + K L +
Sbjct: 510 LFLDSSHYNQLYSL--------STLDCSFNRIETSKGILQHFPKSLAF 549
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 5e-14
Identities = 54/377 (14%), Positives = 92/377 (24%), Gaps = 84/377 (22%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
D L L L+GN + S
Sbjct: 73 DKAWHGLHHLSNLILTGN-----------------------PIQSF---------SPGSF 100
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
+ L L + SL + ++ L++ N+ + + L
Sbjct: 101 SGLTSLENLVAVETKL-----ASLESFPIGQLITLKKLNVAHNF---IHSCKLPAYFSNL 152
Query: 330 KSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNC 386
+L + L N I + I L LD+ N I AF
Sbjct: 153 TNLVHVDLSYNYI--QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-------QG 203
Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRT---ITTIDLGGNNIHSKGASAIARVLKDNS 443
L + L N + L I N+ S + + +
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL--CDV 261
Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
I L Y +D N++ + L I + +
Sbjct: 262 TIDEFRLTYTNDFSDD----IVKFHCLANVSAMSLAGVSIKYLED------VPKHFKWQS 311
Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
L + L+ L L S+ L N+ +L L
Sbjct: 312 LSIIRCQLKQFPTLDLPF--------LKSLTLTMNKGSISFKKVALPSLS--------YL 355
Query: 564 NLANNFLTKFGQSALTD 580
+L+ N L+ G + +D
Sbjct: 356 DLSRNALSFSGCCSYSD 372
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 37/234 (15%), Positives = 72/234 (30%), Gaps = 50/234 (21%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L L+LS N + G + + L +DL GA ++ L+ L
Sbjct: 352 LSYLDLSRNALSFSGCCSY-------SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL 404
Query: 280 ELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
+ ++ + ++S F SL + L ++ G SL L
Sbjct: 405 DFQHSTLKRVTEFSAFLSL-------EKLLYLDISYTNTKIDFDGIF----LGLTSLNTL 453
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHV-------------- 379
+ GNS D + + + ++ L LD+ + G F
Sbjct: 454 KMAGNSFKDNTLSNVFANTTN----LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 380 ----AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
+ + SL ++ N I +++ +L N++
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRI----ETSKGILQHFPKSLAFFNLTNNSVAC 559
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 8e-11
Identities = 49/330 (14%), Positives = 104/330 (31%), Gaps = 41/330 (12%)
Query: 248 VERLQLSSVDLRDEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIR 305
+E + + D+ + ++ + + ++L+ N + L N S ++
Sbjct: 8 IEVVPNITYQCMDQKLSKVPDDIPSS---TKNIDLSFNPL-----KILKSYSFSNFSELQ 59
Query: 306 SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365
L L+ + A G L L L GN I SGL+S L L
Sbjct: 60 WLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPI-QSFSPGSFSGLTS----LENLV 110
Query: 366 IGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG 423
++ +L +N+ N I K+ + +DL
Sbjct: 111 AVETKLASLESFPIG------QLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVHVDLS 161
Query: 424 GNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483
N I + + + + ++ V SLD++ NPI +A + ++ L L
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-----KLHELTLRGNFN 216
Query: 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
++ + L + ++ R+ + + + + L + D
Sbjct: 217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276
Query: 544 GAFAIAQALKANEDVAVTSLNLANNFLTKF 573
V++++LA +
Sbjct: 277 DIVKFHCLAN------VSAMSLAGVSIKYL 300
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 9e-18
Identities = 60/418 (14%), Positives = 128/418 (30%), Gaps = 71/418 (16%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
E + ++N I + + Q + +L+LS NP+ + + +L
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-----NFIQPGAFKEIRLHKLT 206
Query: 253 LS----SVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAEALLENSTIRS 306
L S+++ + +A L + +L N+ D S L N TI
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-----LCNLTIEE 261
Query: 307 LHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS---------- 356
L + + ++ L +I + G
Sbjct: 262 FRLAYLD---YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 357 ----RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
+ L L +N + + SL +++L N + +G + +
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGC--CSQSDF 370
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG- 471
++ +DL N + + ++ + LD ++ + K +SE F
Sbjct: 371 GTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSL 420
Query: 472 -NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530
N+ L + + +++ +L + N ++ + L
Sbjct: 421 RNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNL 472
Query: 531 TSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
T +DL+ ++ AF +L+ LN+A+N L L
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQ--------VLNMASNQLKSVPDGIFDRLTSLQK 522
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 70/403 (17%), Positives = 111/403 (27%), Gaps = 100/403 (24%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
DG QS L TL L+GN + S+
Sbjct: 69 DGAYQSLSHLSTLILTGN-----------------------PIQSLA---------LGAF 96
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
S L+ L + SL + + ++ L++ N + + L +
Sbjct: 97 SGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNL 148
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNCK 387
+L L L N I + L LD+ N ++ GAF
Sbjct: 149 TNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-------EI 200
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD--NSVI 445
L + L N + L + + LG L+ N I
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGL-AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 446 TSLDLAYNPIGADGAKALSEVLK-------------------FHGNINTLKLGWCQIGAS 486
LAY D L L ++ L+L C+ G
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
Query: 487 GAEFVAD----MLRYNNTISI-----------LDLRANGLRDEGAKCLAQSFKVVNEALT 531
+ N + LDL NGL +G C +QS +L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDF-GTTSLK 376
Query: 532 SIDLAFNEIRD-DGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
+DL+FN + F + L L+ ++ L +
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQL--------EHLDFQHSNLKQM 411
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 40/216 (18%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ L+LS N + +G C ++ L LS + ++ L L
Sbjct: 349 LEFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHL 401
Query: 280 ELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
+ ++ + ++S F SL + L ++ + G SL L
Sbjct: 402 DFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIF----NGLSSLEVL 450
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWIN 393
+ GNS + + + + L + L LD+ + AF + SL +N
Sbjct: 451 KMAGNSFQENFLPDIFTELRN----LTFLDLSQCQLEQLSPTAF------NSLSSLQVLN 500
Query: 394 LYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
+ N + + + + ++ I L N
Sbjct: 501 MASNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 54/322 (16%), Positives = 105/322 (32%), Gaps = 38/322 (11%)
Query: 255 SVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNY 313
+ + I + L + + L+L+ N + L + ++ L L+
Sbjct: 11 TYQCMELNFYKIPDNLPFS--TKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCE 63
Query: 314 GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS- 372
+ A L L L GN I ++L G S L L +++
Sbjct: 64 IQTIEDGAYQ----SLSHLSTLILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 373 -AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431
+ K+L +N+ N I K+ + + +DL N I S
Sbjct: 115 LENFPIG------HLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491
+ + + + + SLDL+ NP+ A E+ ++ L L + +
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVMKTC 220
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
L + L R+EG L + K E L ++ + + +
Sbjct: 221 IQGLAGL---EVHRLVLGEFRNEG--NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275
Query: 552 LKANEDVAVTSLNLANNFLTKF 573
N V+S +L + + +
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERV 297
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 63/366 (17%), Positives = 130/366 (35%), Gaps = 59/366 (16%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ + + +P E + + + L L +
Sbjct: 450 LQIIYFANSPFTY---------DNIAVDWEDANSDYAKQYENEELSWSNLKD----LTDV 496
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-----GGALGANALAKGLEGNKSLRE 334
EL N T L + L + ++SL++ N LA + ++
Sbjct: 497 ELYNC----PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
++ N++ + A + + L +LD +N + AF L + L
Sbjct: 553 FYMGYNNLEEFPASASLQKMVK----LGLLDCVHNKVRHLEAF------GTNVKLTDLKL 602
Query: 395 YMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHS--KGASAIARVLKDNSVITSLDLA 451
N I E+I D + + N + + K V+ S+D +
Sbjct: 603 DYNQI-----EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN-----AKSVYVMGSVDFS 652
Query: 452 YNPIGADGAKALSEVLKFHG-NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510
YN IG++G + + G N +T+ L + +I +F ++ + IS + L N
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEI----QKFPTELFATGSPISTIILSNNL 708
Query: 511 LR---DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLAN 567
+ + K ++K LT+IDL FN++ ++ +A +++++++
Sbjct: 709 MTSIPENSLKPKDGNYK-NTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSY 762
Query: 568 NFLTKF 573
N + F
Sbjct: 763 NCFSSF 768
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 3e-14
Identities = 57/387 (14%), Positives = 128/387 (33%), Gaps = 54/387 (13%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
LK L+ + G + L + ER + + L + L +
Sbjct: 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM-------FLDYDQRLNLS 401
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
+L + I + + ++ + SL ++K ++ L+ ++
Sbjct: 402 DLLQDAI--NRNPEMKP--IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457
Query: 340 NSIGDEGIRALMSGLSSRKGK--------------LAVLDIGNNSISAKGAFHVAEYIKN 385
+ + I +S K L +++ N + + +++ +
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYD 513
Query: 386 CKSLLWINLYMNDI-----GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440
L +N+ N ++AD I +G NN+ ASA + +
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573
Query: 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
+ LD +N + + L + LKL + QI E D + +
Sbjct: 574 K---LGLLDCVHNKV-----RHLEAFGTNV-KLTDLKLDYNQI----EEIPEDFCAFTDQ 620
Query: 501 ISILDLRANGLRDEGAKCLAQSFKVVN-EALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559
+ L N L+ + F + + S+D ++N+I +G I+ ++ + +
Sbjct: 621 VEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGR-NISCSMDDYKGIN 674
Query: 560 VTSLNLANNFLTKFGQSALTDAKDLVY 586
+++ L+ N + KF +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPIST 701
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 30/242 (12%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRD-EGAKAIAELLKNNSILRV 278
+ +++ S N IG EG +I + + S+V L E K EL S +
Sbjct: 646 MGSVDFSYNKIGSEGR----NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701
Query: 279 LELNNNMIDY---SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
+ L+NN++ + + ++ L N +L + A L L +
Sbjct: 702 IILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL---PYLSNM 758
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNCKSLLWIN 393
+ N S +L I + + I C SL+ +
Sbjct: 759 DVSYNCF--SSFPTQPLNSS----QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
+ NDI K+ + L + +D+ N S +++ ++ L Y+
Sbjct: 813 IGSNDI-----RKVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAG----MYVLLYD 861
Query: 454 PI 455
Sbjct: 862 KT 863
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 3e-16
Identities = 59/381 (15%), Positives = 114/381 (29%), Gaps = 58/381 (15%)
Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEG--AKAIAELLKNN 273
I L L L N +K L AG+E +L + R+EG K L+
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGL---AGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254
Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
L + E +DY + + + + S L + + N +
Sbjct: 255 CNLTIEEFRLAYLDYY-LDDIIDLFNCLTNVSSFSLVSVTIERVKDFS------YNFGWQ 307
Query: 334 ELHLHGNSIGDEGIRALMSGLSSRK--------------GKLAVLDIGNNSISAKGAFHV 379
L L G L S L LD+ N +S KG
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439
+ SL +++L N + ++ + +D +N+ ++
Sbjct: 368 S--DFGTTSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV---F 417
Query: 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNN 499
+ LD+++ A + + ++ LK+ + F+ D+
Sbjct: 418 LSLRNLIYLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQEN---FLPDIFTELR 470
Query: 500 TISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANED 557
++ LDL L +L ++++ N D + +L
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMSHNNFFSLDTFPYKCLNSL----- 520
Query: 558 VAVTSLNLANNFLTKFGQSAL 578
L+ + N + + L
Sbjct: 521 ---QVLDYSLNHIMTSKKQEL 538
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 59/413 (14%), Positives = 125/413 (30%), Gaps = 61/413 (14%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
E + ++N I + + Q + +L+LS NP+ + + +L
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-----NFIQPGAFKEIRLHKLT 206
Query: 253 LSSVDLRDEGAKAIAELLKNNSILR-VLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311
L + K + L + R VL N + F A L N TI L
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS--------------R 357
+ + ++ L +I + G +
Sbjct: 267 LD---YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323
Query: 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
L L +N + + SL +++L N + +G + + ++
Sbjct: 324 LKSLKRLTFTSNKGGNAFSE------VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSL 375
Query: 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINT 475
+DL N + + ++ + LD ++ + K +SE F N+
Sbjct: 376 KYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIY 425
Query: 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
L + + +++ +L + N ++ + + LT +DL
Sbjct: 426 LDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR----NLTFLDL 477
Query: 536 AFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
+ ++ AF +L+ LN+++N L
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQ--------VLNMSHNNFFSLDTFPYKCLNSLQV 522
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 37/240 (15%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ L+LS N + +G + L +DL G ++ L L
Sbjct: 349 LEFLDLSRNGLSFKG-------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 401
Query: 280 ELNNN----MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
+ ++ M ++S F SL + L ++ + G SL L
Sbjct: 402 DFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTRVAFNGIFN----GLSSLEVL 450
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
+ GNS + + + + L + L LD+ + + SL +N+
Sbjct: 451 KMAGNSFQENFLPDIFTELRN----LTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMS 502
Query: 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
N+ K ++ +D N+I + + + L+L N
Sbjct: 503 HNNFFSL----DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS---LAFLNLTQNDF 555
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 71/416 (17%), Positives = 129/416 (31%), Gaps = 99/416 (23%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
DG QS L TL L+GN + S+
Sbjct: 69 DGAYQSLSHLSTLILTGN-----------------------PIQSL---------ALGAF 96
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGN 329
S L+ L SL + + T++ L++ N + + L +
Sbjct: 97 SGLSSLQKLVAVET-----NLASLENFPIGHLKTLKELNVAHNL---IQSFKLPEYFSNL 148
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFH--------- 378
+L L L N I + L LD+ N ++ GAF
Sbjct: 149 TNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 379 ---------VAEYIKNCKSLLWINLYMNDIGDEG--AEKIADALKQNRTITTIDLGGNNI 427
+ I+ L L + + +EG + AL+ +T + +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487
I + + ++S L I + ++ L+L C+ G
Sbjct: 268 DYYL-DDIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFP 320
Query: 488 AEFVADM--LRYNN-------------TISILDLRANGLRDEGAKCLAQSFKVVNEALTS 532
+ + L + + ++ LDL NGL +G C +QS +L
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG--CCSQSDF-GTTSLKY 377
Query: 533 IDLAFNEIRD-DGAFAIAQALKANEDVAVTSLNLANNFLTKFG-QSALTDAKDLVY 586
+DL+FN + F + L+ L+ ++ L + S ++L+Y
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLE--------HLDFQHSNLKQMSEFSVFLSLRNLIY 425
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 38/230 (16%), Positives = 76/230 (33%), Gaps = 31/230 (13%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
NG++ G + +LK L+LS N + + + +E L +L+
Sbjct: 357 NGLSFKGCCSQS--DFGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLK 409
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319
+ + L L++++ + S++ L + GN
Sbjct: 410 QMSEF---SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNS---FQE 459
Query: 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
N L ++L L L + + LSS L VL++ +N+
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQL-SPTAFNSLSS----LQVLNMSHNNFF----SLD 510
Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIH 428
K SL ++ +N I L+ ++ ++L N+
Sbjct: 511 TFPYKCLNSLQVLDYSLNHI----MTSKKQELQHFPSSLAFLNLTQNDFA 556
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 65/368 (17%), Positives = 116/368 (31%), Gaps = 66/368 (17%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
K L+LS NP+ G ++ L LS +++ ++ S L L
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFP----ELQVLDLSRCEIQTI----EDGAYQSLSHLSTL 81
Query: 280 ELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L N I SLA + ++ L +L + K+L+EL++
Sbjct: 82 ILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLENFPIG----HLKTLKELNVA 132
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N I + S L++ L LD+ +N I + ++ + +NL
Sbjct: 133 HNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQS----IYCTDLRVLHQMPLLNL---- 180
Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
++DL N ++ A + L L N +
Sbjct: 181 --------------------SLDLSLNPMNFIQPGAFK-----EIRLHKLTLRNNFDSLN 215
Query: 459 GAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKC 518
K + L ++ L LG + + +F L ++I + R L
Sbjct: 216 VMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274
Query: 519 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578
+ + N ++S L I F+ + L L N +F L
Sbjct: 275 IDLFNCLTN--VSSFSLVSVTIERVKDFSYNFGWQ--------HLELVNCKFGQFPTLKL 324
Query: 579 TDAKDLVY 586
K L +
Sbjct: 325 KSLKRLTF 332
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 41/245 (16%), Positives = 71/245 (28%), Gaps = 64/245 (26%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
S + L L N + L VLD+ I GA+ +
Sbjct: 29 STKNLDLSFNPL-RHLGSYSFFSFPE----LQVLDLSRCEIQTIEDGAYQ------SLSH 77
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L + L N I A ++ + N+ S + + L
Sbjct: 78 LSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLA----SLENFPIGHLKTLKEL 129
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
++A+N I + KL + + LDL +
Sbjct: 130 NVAHN------------------LIQSFKLP-------------EYFSNLTNLEHLDLSS 158
Query: 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLA 566
N ++ L + + S+DL+ N + GAF ++ + L L
Sbjct: 159 NKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFK---------EIRLHKLTLR 208
Query: 567 NNFLT 571
NNF +
Sbjct: 209 NNFDS 213
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 6e-16
Identities = 64/351 (18%), Positives = 118/351 (33%), Gaps = 64/351 (18%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N I F L+ L L+ N + + + L L S L+
Sbjct: 42 NRIKTLNQDEFASFPH----LEELELNENIVSAVEPGA----FNNLFNLRTLGLRSNRLK 93
Query: 260 DEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGAL 317
I + S L L+++ N I L + + ++ ++SL + N +
Sbjct: 94 -----LIPLGVFTGLSNLTKLDISENKI-----VILLDYMFQDLYNLKSLEVGDNDLVYI 143
Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KG 375
A + G SL +L L ++ AL S L L VL + + +I+A
Sbjct: 144 SHRAFS----GLNSLEQLTLEKCNLTSIPTEAL-SHLHG----LIVLRLRHLNINAIRDY 194
Query: 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435
+F K L + + D + +T++ + N+ +A+
Sbjct: 195 SF------KRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNL-----TAV 239
Query: 436 -ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVA 492
++ + L+L+YNPI H + ++L Q+ A
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSM------LHELLRLQEIQLVGGQL----AVVEP 289
Query: 493 DMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543
R N + +L++ N L L +S L ++ L N + D
Sbjct: 290 YAFRGLNYLRVLNVSGNQLT-----TLEESVFHSVGNLETLILDSNPLACD 335
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 60/346 (17%)
Query: 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-ST 303
L L ++ + L LELN N++ +++ N
Sbjct: 31 PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIV-----SAVEPGAFNNLFN 81
Query: 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363
+R+L L N + G +L +L + N I L + L
Sbjct: 82 LRTLGLRSNRLKLIPLGVFT----GLSNLTKLDISENKIVILLDYMF-QDLYN----LKS 132
Query: 364 LDIGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTI 420
L++G+N + + AF SL + L ++ I +AL + +
Sbjct: 133 LEVGDNDLVYISHRAF------SGLNSLEQLTLEKCNL-----TSIPTEALSHLHGLIVL 181
Query: 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480
L NI++ + K + L++++ P ++ + N+ +L +
Sbjct: 182 RLRHLNINAIRDYS----FKRLYRLKVLEISHWPY----LDTMTPNCLYGLNLTSLSITH 233
Query: 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540
C + +R+ + L+L N + L + L I L ++
Sbjct: 234 CNL----TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE-----LLRLQEIQLVGGQL 284
Query: 541 R--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
+ AF L+ LN++ N LT +S +L
Sbjct: 285 AVVEPYAFRGLNYLR--------VLNVSGNQLTTLEESVFHSVGNL 322
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 40/172 (23%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ I A +F L LK L +S P + + + + L
Sbjct: 179 IVLRLRHLNINAIRDYSFKR-LYR---LKVLEISHWPY----LDTMTPNCLYGLNLTSLS 230
Query: 253 LSSVDLR--DEGAKAIAELLKNNSILRVLELNNNMIDY------SGFTSL---------- 294
++ +L A +++ LR L L+ N I L
Sbjct: 231 ITHCNLTAVPYLA------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
Query: 295 ----AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSI 342
A + +R L+++GN L + +L L L N +
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF----HSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 5e-05
Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 27/175 (15%)
Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 473
+DLG N I + + L+L N + A A + + N+
Sbjct: 31 PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENIVSAVEPGAFNNL----FNL 82
Query: 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
TL L ++ + + ++ LD+ N + L S+
Sbjct: 83 RTLGLRSNRL----KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-----LYNLKSL 133
Query: 534 DLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
++ N++ AF+ +L L L LT AL+ L+
Sbjct: 134 EVGDNDLVYISHRAFSGLNSL--------EQLTLEKCNLTSIPTEALSHLHGLIV 180
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 9e-16
Identities = 64/345 (18%), Positives = 119/345 (34%), Gaps = 75/345 (21%)
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLN 310
L V D G + + + L + +L+L NN I T + + +N + +L L
Sbjct: 32 HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKI-----TEIKDGDFKNLKNLHTLILI 84
Query: 311 GNYGGALGANALAK-------GLEGNK----------SLRELHLHGNSIGDEGIRALMSG 353
N + A A L N+ +L+EL +H N I +
Sbjct: 85 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE-----ITKVRKS 139
Query: 354 LSSRKGKLAVLDIGNNSISA----KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409
+ + ++ V+++G N + + GAF + K L +I + +I I
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAF------QGMKKLSYIRIADTNI-----TTIPQ 188
Query: 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469
L + +T + L GN I A++ LK + + L L++N I A +L+
Sbjct: 189 GLPPS--LTELHLDGNKITKVDAAS----LKGLNNLAKLGLSFNSISAVDNGSLANT--- 239
Query: 470 HGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR--DEGAKCLAQSFKVVN 527
++ L L ++ V L + I ++ L N + C
Sbjct: 240 -PHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Query: 528 EALTSIDLAFNEIR----DDGAFAIAQALKANEDVAVTSLNLANN 568
+ + L N ++ F ++ L N
Sbjct: 294 S-YSGVSLFSNPVQYWEIQPSTFRCVYVR--------AAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 50/270 (18%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA--GVER 250
+ N I+ AF +++ L+ L LS N + L + ++
Sbjct: 79 HTLILINNKISKISPGAFAPLVK----LERLYLSKNQL---------KELPEKMPKTLQE 125
Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
L++ ++ L + + V+EL N + SG + A ++ + + +
Sbjct: 126 LRVHENEITKVRKSVFNGLNQ----MIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIA 179
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNN 369
+ SL ELHL GN I + A GL++ LA L + N
Sbjct: 180 DTNITTIPQGLPP-------SLTELHLDGNKI--TKVDAASLKGLNN----LAKLGLSFN 226
Query: 370 SIS--AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
SIS G+ N L ++L N + K+ L ++ I + L NNI
Sbjct: 227 SISAVDNGSL------ANTPHLRELHLNNNKL-----VKVPGGLADHKYIQVVYLHNNNI 275
Query: 428 HSKGASAIARVLKDNSV--ITSLDLAYNPI 455
+ G++ + + + L NP+
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 45/228 (19%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+E+ N IT F+G+ Q + + L NP+ G++ + ++
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQ----MIVVELGTNPLKSSGIEN--GAFQGMKKLSYIR 177
Query: 253 LSSVDLR--DEGA-KAIAEL-LKNNSI-------------LRVLELNNNMIDYSGFTSLA 295
++ ++ +G ++ EL L N I L L L+ N I +++
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-----SAVD 232
Query: 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-G 353
L N +R LHLN N L + GL +K ++ ++LH N+I G G
Sbjct: 233 NGSLANTPHLRELHLNNN---KL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287
Query: 354 LSSRKGKLAVLDIGNNSISA----KGAFHVAEYIKNCKSLLWINLYMN 397
+++K + + + +N + F + L
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFR------CVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 44/261 (16%), Positives = 79/261 (30%), Gaps = 53/261 (20%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
LR + G+ + L A+LD+ NN I+ G F N K+
Sbjct: 32 HLRVVQCSDL-----GLEKVPKDLPPD---TALLDLQNNKITEIKDGDFK------NLKN 77
Query: 389 LLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
L + L N I KI A + + L N + + + +
Sbjct: 78 LHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKE-----LPEKMPKT--LQE 125
Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
L + N I + + + ++LG + +SG E + +S + +
Sbjct: 126 LRVHENEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIE--NGAFQGMKKLSYIRIA 179
Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNL 565
+ LT + L N+I D + L L L
Sbjct: 180 DTNITTIPQGLPPS--------LTELHLDGNKITKVDAASLKGLNNLA--------KLGL 223
Query: 566 ANNFLTKFGQSALTDAKDLVY 586
+ N ++ +L + L
Sbjct: 224 SFNSISAVDNGSLANTPHLRE 244
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 59/419 (14%), Positives = 108/419 (25%), Gaps = 98/419 (23%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
K ++ + + + V+ L LS L A +A K L +L
Sbjct: 12 YKIEKVTDSSLKQALA----SLRQSAWNVKELDLSGNPLSQISAADLAPFTK----LELL 63
Query: 280 ELNNNMI----DYSGFTSLAE---------ALLENSTIRSLHLNGNYGGALGANALAK-- 324
L++N++ D ++L LL +I +LH N + +
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKK 123
Query: 325 --GLEGNK-------------SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
L NK ++ L L N I L + + L L++ N
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----LEHLNLQYN 179
Query: 370 SISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
I L ++L N + + + +T I L N +
Sbjct: 180 FIYDVKGQVV--------FAKLKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNNKL 226
Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA----LSEVLKFHGNINT-------- 475
I + L+ + + DL N + V
Sbjct: 227 -----VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281
Query: 476 -------LKLGWCQIGASGAEFVADMLRYNNT-ISILDLRANGLRDEGAKCLAQSFKVVN 527
G A F ++ ++L + + + +
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER------LECERENQ 335
Query: 528 EALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
ID + R D QA +L L + + +L
Sbjct: 336 ARQREIDALKEQYRTVIDQVTLRKQAK--------ITLEQKKKALDEQVSNGRRAHAEL 386
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 58/309 (18%), Positives = 107/309 (34%), Gaps = 61/309 (19%)
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
AI E+ +N + ++ ++ ++ + +L +++ ++ L L+GN + A LA
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLA 55
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
L L+L N + L LS+ L LD+ NN + +
Sbjct: 56 ----PFTKLELLNLSSNVL--YETLDL-ESLST----LRTLDLNNNYVQE---------L 95
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
S+ ++ N+I +++ + Q I L N I +
Sbjct: 96 LVGPSIETLHAANNNI-----SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR--- 145
Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
+ LDL N I L+ + L L + I + V L+
Sbjct: 146 -VQYLDLKLNEIDTVNFAELAASSD---TLEHLNLQYNFIYDVKGQVVFAKLKT------ 195
Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKANEDVAVTS 562
LDL +N L + F+ +T I L N++ + A +Q L+
Sbjct: 196 LDLSSNKLAF-----MGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLE--------H 241
Query: 563 LNLANNFLT 571
+L N
Sbjct: 242 FDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 31/281 (11%), Positives = 72/281 (25%), Gaps = 47/281 (16%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ-LSSVDLRDEGAKAIAEL 269
D ++ L+L N I + L ++L+ +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ L+ L+L++N + + + + + L N L + K L +
Sbjct: 188 VVFAK-LKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNN---KL--VLIEKALRFS 236
Query: 330 KSLRELHLHGN------------------SIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
++L L GN ++ + ++ L + G
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
Query: 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG 431
A + +L + E++ + ID
Sbjct: 297 EDLP----APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY---- 348
Query: 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472
+ I +V +L+ + + + G
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGT 389
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 24/169 (14%)
Query: 207 IKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC--DILVDNAGVERLQLSSVDLRDEGAK 264
+ + L+ + L+ +L GN C D N V+ + +V K
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRVQTVAKQTV------KK 274
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAE-ALLENSTIRSLHLNGNYGGALGANALA 323
+ + ++ + + L+ L G+ L
Sbjct: 275 LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC---- 330
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372
E RE+ R ++ ++ RK L+ ++
Sbjct: 331 -ERENQARQREIDALKEQ-----YRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 69/365 (18%), Positives = 137/365 (37%), Gaps = 75/365 (20%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDI----LVDN-----AGVERL-QLSSVDLRDEGAKAIAE 268
+ L ++G + +G++ L ++ L N + + L +L+++ + I+
Sbjct: 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA 105
Query: 269 LLKNNSILRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
L +N + LR L LN + I D S +L + + SL+L N+ + L
Sbjct: 106 L-QNLTNLRELYLNEDNISDISPLANL-------TKMYSLNLGANHNLSD-----LSPLS 152
Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
L L + + + + + + + L+ L L + N I + +
Sbjct: 153 NMTGLNYLTVTESKV--KDVTPI-ANLTD----LYSLSLNYNQIE------DISPLASLT 199
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
SL + Y+N I D + + ++ +G N I L + S +T
Sbjct: 200 SLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITDLSP------LANLSQLTW 247
Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
L++ N I ++ +K + L +G QI S + ++ + ++ L L
Sbjct: 248 LEIGTNQI-----SDINA-VKDLTKLKMLNVGSNQI--SDISVLNNL----SQLNSLFLN 295
Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLAN 567
N L +E + + LT++ L+ N I D A + S + AN
Sbjct: 296 NNQLGNEDMEVIGG-----LTNLTTLFLSQNHITDIRPLASLSKM--------DSADFAN 342
Query: 568 NFLTK 572
+ K
Sbjct: 343 QVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 68/383 (17%), Positives = 127/383 (33%), Gaps = 85/383 (22%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRD----EGAKAIAEL-LKNNS 274
TL PI D A R L + D E ++I +L +
Sbjct: 2 AATLATLPAPINQ------IFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEK 55
Query: 275 I-----------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALA 323
+ L L LN N I T + L + +L++ N + A
Sbjct: 56 VASIQGIEYLTNLEYLNLNGNQI-----TDI-SPLSNLVKLTNLYIGTNKITDISA---- 105
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
L+ +LREL+L+ ++I I L + L+ K+ L++G N +
Sbjct: 106 --LQNLTNLRELYLNEDNI--SDISPL-ANLT----KMYSLNLGANHNL-----SDLSPL 151
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
N L ++ + + + D + + ++ L N I L +
Sbjct: 152 SNMTGLNYLTVTESKVKD------VTPIANLTDLYSLSLNYNQIEDISP------LASLT 199
Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
+ N I ++ + +N+LK+G +I + +A++ + ++
Sbjct: 200 SLHYFTAYVNQI--TDITPVAN-MT---RLNSLKIGNNKI--TDLSPLANL----SQLTW 247
Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
L++ N + D A + L +++ N+I D L SL
Sbjct: 248 LEIGTNQISDINA--VKD-----LTKLKMLNVGSNQISDISVLNNLSQL--------NSL 292
Query: 564 NLANNFLTKFGQSALTDAKDLVY 586
L NN L + +L
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTT 315
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 8e-07
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 35/186 (18%)
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
L S +L N I D + + + L++ + + D L N
Sbjct: 195 LASLTSLHYFTAYVNQITDI------TPVANMTRLNSLKIGNNKITD------LSPLANL 242
Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
S L LE+ N I + + A+ + + ++ L++ N + L L
Sbjct: 243 SQLTWLEIGTNQI-----SDI-NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLN 290
Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
L L+ N +G+E + + GL+ L L + N I+ + + + +
Sbjct: 291 SLFLNNNQLGNEDMEVI-GGLT----NLTTLFLSQNHITD------IRPLASLSKMDSAD 339
Query: 394 LYMNDI 399
I
Sbjct: 340 FANQVI 345
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-14
Identities = 47/336 (13%), Positives = 97/336 (28%), Gaps = 63/336 (18%)
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311
Q +V R K I L+ + + + ++ D + + L N + +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQD--VYFGFEDITLNN--QKIVTFKN 60
Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
+ L A L + + L+L+ I + + + + L +G N+I
Sbjct: 61 STMRKLPAALLD----SFRQVELLNLNDLQI-----EEIDTYAFAYAHTIQKLYMGFNAI 111
Query: 372 SA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
F N L + L ND+ + +TT+ + NN+
Sbjct: 112 RYLPPHVFQ------NVPLLTVLVLERNDL-----SSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488
+ + + +L L+ N + + ++ + + +
Sbjct: 161 RIEDDT----FQATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLLST--- 206
Query: 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548
L + LD N + + LT + L N + D
Sbjct: 207 ------LAIPIAVEELDASHNSINVVRGPVNVE--------LTILKLQHNNLTDTAWLLN 252
Query: 549 AQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
L ++L+ N L K + L
Sbjct: 253 YPGLV--------EVDLSYNELEKIMYHPFVKMQRL 280
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 73.4 bits (180), Expect = 8e-14
Identities = 57/303 (18%), Positives = 105/303 (34%), Gaps = 71/303 (23%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRE 334
+++ N+ + L ALL++ + L+LN + A A ++++
Sbjct: 53 QKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQK 103
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWI 392
L++ N+ IR L + L VL + N +S+ +G FH N L +
Sbjct: 104 LYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH------NTPKLTTL 152
Query: 393 NLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
++ N++ E+I D + ++ + L N + S I + +++
Sbjct: 153 SMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-------FHANVS 200
Query: 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511
YN + L + L I N ++IL L+ N L
Sbjct: 201 YNLL---------STLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL 244
Query: 512 RDEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANN 568
D L +DL++NE+ F Q L L ++NN
Sbjct: 245 TDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKMQRL--------ERLYISNN 288
Query: 569 FLT 571
L
Sbjct: 289 RLV 291
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 3e-13
Identities = 50/379 (13%), Positives = 101/379 (26%), Gaps = 101/379 (26%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
+L S ++ LNL+ Q+ +D
Sbjct: 68 AALLDSFRQVELLNLNDL-----------------------QIEEID---------TYAF 95
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGN 329
++ L + N I L + +N + L L N +L
Sbjct: 96 AYAHTIQKLYMGFNAI-----RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH----NT 146
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCK 387
L L + N++ + L L + +N ++
Sbjct: 147 PKLTTLSMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI---------P 192
Query: 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITS 447
SL N+ N + L + +D N+I+ +T
Sbjct: 193 SLFHANVSYNLL---------STLAIPIAVEELDASHNSINVVRGPVNVE-------LTI 236
Query: 448 LDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507
L L +N + L + + + L + ++ + + + L +
Sbjct: 237 LKLQHNNLTDTAW------LLNYPGLVEVDLSYNEL----EKIMYHPFVKMQRLERLYIS 286
Query: 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNL 565
N L L + L +DL+ N + + + + +L L
Sbjct: 287 NNRLVA-----LNLYGQP-IPTLKVLDLSHNHLLHVERNQPQFDR---------LENLYL 331
Query: 566 ANNFLTKFGQSALTDAKDL 584
+N + S K+L
Sbjct: 332 DHNSIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 29/267 (10%)
Query: 212 GVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL-QLSSVDLRDEGAKAIAELL 270
L + L ++LS N + + ++ +L + + + A+
Sbjct: 248 AWLLNYPGLVEVDLSYNELEK----------IMYHPFVKMQRLERLYISNNRLVALNLYG 297
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
+ L+VL+L++N + + + + +L+L+ N L +
Sbjct: 298 QPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHNSIVTLKLSTH-------H 345
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
+L+ L L N +RAL ++ + AV D + H ++ K L
Sbjct: 346 TLKNLTLSHNDWDCNSLRALFRNVA----RPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401
Query: 391 WINLYMNDIGD--EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L + E ++ TI ++ + I +G + + + + L
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
Query: 449 DLAYNPIGADGAKALSEVLKFHGNINT 475
+ + + + H I+T
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGLHAEIDT 488
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 47/333 (14%), Positives = 97/333 (29%), Gaps = 63/333 (18%)
Query: 255 SVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG 314
+V R K I L+ + + + ++ D + + L N + + +
Sbjct: 2 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQD--VYFGFEDITLNN--QKIVTFKNSTM 57
Query: 315 GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA- 373
L A L + + L+L+ I + A + + + L +G N+I
Sbjct: 58 RKLPAALLD----SFRQVELLNLNDLQIEEIDTYAF-AYAHT----IQKLYMGFNAIRYL 108
Query: 374 -KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKG 431
F N L + L ND+ + +TT+ + NN+
Sbjct: 109 PPHVFQ------NVPLLTVLVLERNDL-----SSLPRGIFHNTPKLTTLSMSNNNLERIE 157
Query: 432 ASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491
+ + + +L L+ N + + ++ + + +
Sbjct: 158 DDT----FQATTSLQNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLL-------- 198
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551
L + LD N + + LT + L N + D
Sbjct: 199 -STLAIPIAVEELDASHNSINVVRGPVNVE--------LTILKLQHNNLTDTAWLLNYPG 249
Query: 552 LKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
L ++L+ N L K + L
Sbjct: 250 LV--------EVDLSYNELEKIMYHPFVKMQRL 274
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 57/303 (18%), Positives = 106/303 (34%), Gaps = 71/303 (23%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRE 334
+++ N+ + L ALL++ + L+LN + A A ++++
Sbjct: 47 QKIVTFKNSTM-----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQK 97
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWI 392
L++ N+ IR L + L VL + N +S+ +G FH N L +
Sbjct: 98 LYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH------NTPKLTTL 146
Query: 393 NLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
++ N++ E+I D + ++ + L N + S I + +++
Sbjct: 147 SMSNNNL-----ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-------FHANVS 194
Query: 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511
YN + L + L I N ++IL L+ N L
Sbjct: 195 YNLL---------STLAIPIAVEELDASHNSINVVRGPV-------NVELTILKLQHNNL 238
Query: 512 RDEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANN 568
D L +DL++NE+ F Q L+ L ++NN
Sbjct: 239 TDTAWLLNYPG--------LVEVDLSYNELEKIMYHPFVKMQRLE--------RLYISNN 282
Query: 569 FLT 571
L
Sbjct: 283 RLV 285
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 52/375 (13%), Positives = 113/375 (30%), Gaps = 103/375 (27%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAI-AEL 269
+L S ++ LNL+ I + + A + + + + + +
Sbjct: 62 AALLDSFRQVELLNLNDLQIEE---------IDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEG 328
+N +L VL L N + +SL + N + +L ++ N + +
Sbjct: 113 FQNVPLLTVLVLERNDL-----SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ----A 163
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
SL+ L L N + + + S L ++ N +S + +
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPS--------LFHANVSYNLLST---------LAIPIA 206
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
+ ++ N I + + +T + L NN+ L + + +
Sbjct: 207 VEELDASHNSI-----NVVRGPVNVE--LTILKLQHNNLTDTAW------LLNYPGLVEV 253
Query: 449 DLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
DL+YN + + + F + L + NN + L+L
Sbjct: 254 DLSYNEL-----EKIMYHP-FVKMQRLERLYI------------------SNNRLVALNL 289
Query: 507 RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLN 564
+ L +DL+ N + + + + +L
Sbjct: 290 YGQPIP----------------TLKVLDLSHNHLLHVERNQPQFDR---------LENLY 324
Query: 565 LANNFLTKFGQSALT 579
L +N + S
Sbjct: 325 LDHNSIVTLKLSTHH 339
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 51/245 (20%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
D Q+ +L+ L LS N + + + + +S L L
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTHVDLSLI-------PSLFHANVSYNLLST---------L 201
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNK 330
+ L+ ++N I + + + L L N L
Sbjct: 202 AIPIAVEELDASHNSI-----NVVRGPVNVE--LTILKLQHNNLTDTAW------LLNYP 248
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
L E+ L N + +M + +L L I NN + + Y + +L
Sbjct: 249 GLVEVDLSYNE-----LEKIMYHPFVKMQRLERLYISNNRLV-----ALNLYGQPIPTLK 298
Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
++L N + + Q + + L N+I + S + +L L
Sbjct: 299 VLDLSHNHL-----LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT-------LKNLTL 346
Query: 451 AYNPI 455
++N
Sbjct: 347 SHNDW 351
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 25/147 (17%)
Query: 212 GVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
L + L ++LS N + V +ERL +S+ L +
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYH------PFVKMQRLERLYISNNRLVA-----LNLY 290
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ L+VL+L++N + + + + +L+L+ N L +
Sbjct: 291 GQPIPTLKVLDLSHNHL-----LHVERNQPQFDRLENLYLDHNSIVTLKLSTH------- 338
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSS 356
+L+ L L N +RAL ++
Sbjct: 339 HTLKNLTLSHNDWDCNSLRALFRNVAR 365
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 67/373 (17%), Positives = 117/373 (31%), Gaps = 74/373 (19%)
Query: 204 AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGA 263
A+G + G+ L +L + + + G C C L V D G
Sbjct: 4 ASGAETTSGIPD----LDSLPPTYSAMCPFG--CHCH------------LRVVQCSDLGL 45
Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANAL 322
KA+ + + + +L+L NN I + L + + + +L L N + A
Sbjct: 46 KAVPKEISPD--TTLLDLQNNDI-----SELRKDDFKGLQHLYALVLVNNKISKIHEKAF 98
Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVA 380
+ + L++L++ N + + L S L L I +N I KG F
Sbjct: 99 S----PLRKLQKLYISKNHL-----VEIPPNLPS---SLVELRIHDNRIRKVPKGVFS-- 144
Query: 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLK 440
+++ I + N + + G + + + +
Sbjct: 145 ----GLRNMNCIEMGGNPLENSG---FEPGAFDGLKLNYLRISEAKLTGIPKDLPET--- 194
Query: 441 DNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
+ L L +N I A + L + L LG QI L + T
Sbjct: 195 ----LNELHLDHNKIQAIELEDLLRY----SKLYRLGLGHNQI----RMIENGSLSFLPT 242
Query: 501 ISILDLRANGLRD--EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 558
+ L L N L G L + L + L N I G +
Sbjct: 243 LRELHLDNNKLSRVPAGLPDL--------KLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 559 AVTSLNLANNFLT 571
++L NN +
Sbjct: 295 YYNGISLFNNPVP 307
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 46/225 (20%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
E+ N I F G+ + + + GNP+ + G + D + L+
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRN----MNCIEMGGNPLENSGFE---PGAFDGLKLNYLR 178
Query: 253 LSSVDLRDEGAKAIAEL----LKNNSI-------------LRVLELNNNMIDYSGFTSLA 295
+S L L L +N I L L L +N I +
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-----RMIE 233
Query: 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMS-G 353
L T+R LHL+ N L + + GL K L+ ++LH N+I G+ G
Sbjct: 234 NGSLSFLPTLRELHLDNN---KL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288
Query: 354 LSSRKGKLAVLDIGNNSIS----AKGAFHVAEYIKNCKSLLWINL 394
++ + + NN + F L I
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFR------CVTDRLAIQF 327
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 74/408 (18%), Positives = 130/408 (31%), Gaps = 100/408 (24%)
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDI---------LVDNAGVERL-QLS 254
GIK+ DG ++ L +N S N + D +K L + + D + L L+
Sbjct: 57 GIKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT 115
Query: 255 SVDLRD---EGAKAIAEL-------LKNNSI-----------LRVLELNNNMIDYSGFTS 293
+ L + + L L +N+I L+ L N + D +
Sbjct: 116 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 175
Query: 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353
L +T+ L ++ N + L +L L N I I L
Sbjct: 176 L-------TTLERLDISSNKVSDI------SVLAKLTNLESLIATNNQI--SDITPL-GI 219
Query: 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
L+ L L + N + G + +L ++L N I + L
Sbjct: 220 LT----NLDELSLNGNQLKDIGTL------ASLTNLTDLDLANNQISNL------APLSG 263
Query: 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNI 473
+T + LG N I + L + +T+L+L N + + +S + N+
Sbjct: 264 LTKLTELKLGANQISNISP------LAGLTALTNLELNENQL-----EDISPISNLK-NL 311
Query: 474 NTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD-EGAKCLAQSFKVVNEALTS 532
L L + I S V+ + + L N + D L +
Sbjct: 312 TYLTLYFNNI--SDISPVSSL----TKLQRLFFYNNKVSDVSSLANLTN--------INW 357
Query: 533 IDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580
+ N+I D A + T L L + T + +
Sbjct: 358 LSAGHNQISDLTPLANLTRI--------TQLGLNDQAWTNAPVNYKAN 397
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 53/317 (16%), Positives = 100/317 (31%), Gaps = 78/317 (24%)
Query: 269 LLKNNSI-----------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317
+ ++ I L + + S + L+ + +L + ++
Sbjct: 8 ITQDTPINQIFTDTALAEKMKTVLGKTNV--TDTVSQTD--LDQ--VTTLQADRLGIKSI 61
Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377
G+E +L +++ N + I L L+ KL + + NN I+
Sbjct: 62 ------DGVEYLNNLTQINFSNNQL--TDITPL-KNLT----KLVDILMNNNQIA----- 103
Query: 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437
+ N +L + L+ N I D D LK + ++L N I A
Sbjct: 104 -DITPLANLTNLTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTISDISA----- 151
Query: 438 VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY 497
L + + L L+ + L + ++ S +A +
Sbjct: 152 -LSGLTSLQQLSFGNQVTDLKPLANLT-------TLERLDISSNKV--SDISVLAKL--- 198
Query: 498 NNTISILDLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANE 556
+ L N + D L L + L N+++D G A L
Sbjct: 199 -TNLESLIATNNQISDITPLGILTN--------LDELSLNGNQLKDIGTLASLTNL---- 245
Query: 557 DVAVTSLNLANNFLTKF 573
T L+LANN ++
Sbjct: 246 ----TDLDLANNQISNL 258
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-12
Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 48/207 (23%)
Query: 263 AKAIAELLKNNSI----------LRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNG 311
+ LL +S L + L N + D +G I+ L +N
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYA-------HNIKDLTINN 75
Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSI 371
+ + G +L L + G + + I L SGL+ L +LDI +++
Sbjct: 76 IHATNY------NPISGLSNLERLRIMGKDVTSDKIPNL-SGLT----SLTLLDISHSAH 124
Query: 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD--ALKQNRTITTIDLGGNNIHS 429
I + I+L N I D LK + ++++ + +H
Sbjct: 125 DDSI----LTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173
Query: 430 KGASAIARVLKDNSVITSLDLAYNPIG 456
R ++D + L IG
Sbjct: 174 ------YRGIEDFPKLNQLYAFSQTIG 194
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 25/185 (13%), Positives = 62/185 (33%), Gaps = 36/185 (19%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
L + L+ + D G++ ++ L ++++ + + S L
Sbjct: 46 LTYITLANINVTDLTGIEYA-------HNIKDLTINNIHATN------YNPISGLSNLER 92
Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L + + +L+ L + + L ++ + +++ + + + L
Sbjct: 93 LRIMGKDVTSDKIPNLSG--LTS--LTLLDISHSAHD----DSILTKINTLPKVNSIDLS 144
Query: 339 GNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
N I D I L L +L L+I + + I++ L + +
Sbjct: 145 YNGAITD--IMPL-KTLP----ELKSLNIQFDGVHD------YRGIEDFPKLNQLYAFSQ 191
Query: 398 DIGDE 402
IG +
Sbjct: 192 TIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 23/134 (17%)
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
+ L+ L + G + + + L + + L +S D I L K
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGL----TSLTLLDISHSAHDDSILTKINTLPK-- 137
Query: 274 SILRVLELNNNMI--DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
+ ++L+ N D +L ++SL++ + +G+E
Sbjct: 138 --VNSIDLSYNGAITDIMPLKTL-------PELKSLNIQFDGVHDY------RGIEDFPK 182
Query: 332 LRELHLHGNSIGDE 345
L +L+ +IG +
Sbjct: 183 LNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 53/200 (26%)
Query: 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD-EGAEKIADALKQNRTITTIDL 422
+G +S + SL +I L ++ D G E I + +
Sbjct: 28 GLLGQSSTANI-------TEAQMNSLTYITLANINVTDLTGIEY----AHN---IKDLTI 73
Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482
+ + + S + L + + +D LS L ++ L +
Sbjct: 74 NNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSG-LT---SLTLLDISHSA 123
Query: 483 IGASGAEFVADM-------LRYNNTIS------------ILDLRANGLRD-EGAKCLAQS 522
S + + L YN I+ L+++ +G+ D G + +
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPK- 182
Query: 523 FKVVNEALTSIDLAFNEIRD 542
L + I
Sbjct: 183 -------LNQLYAFSQTIGG 195
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 50/303 (16%), Positives = 98/303 (32%), Gaps = 55/303 (18%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
K ++ + + L + V+ L LS L A +A K L +L
Sbjct: 12 YKIEKVTDSSLKQA----LASLRQSAWNVKELDLSGNPLSQISAADLAPFTK----LELL 63
Query: 280 ELNNNMI----DYSGFTSLAE---------ALLENSTIRSLHLNGNYGGALGANALAKGL 326
L++N++ D ++L LL +I +LH N + +
Sbjct: 64 NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG---- 119
Query: 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
+ + ++L N I L + ++ LD+ N I + AE +
Sbjct: 120 ---QGKKNIYLANNK-----ITMLRDLDEGCRSRVQYLDLKLNEID---TVNFAELAASS 168
Query: 387 KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVIT 446
+L +NL N I + + T+DL N + + + + + +T
Sbjct: 169 DTLEHLNLQYNFI-----YDV-KGQVVFAKLKTLDLSSNKL-----AFMGPEFQSAAGVT 217
Query: 447 SLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
+ L N + + + L+F N+ L D N + +
Sbjct: 218 WISLRNNKL-----VLIEKALRFSQNLEHFDLRGNGFHCGTLR---DFFSKNQRVQTVAK 269
Query: 507 RAN 509
+
Sbjct: 270 QTV 272
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 56/309 (18%), Positives = 107/309 (34%), Gaps = 61/309 (19%)
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALA 323
AI E+ +N + ++ ++ ++ + +L +++ ++ L L+GN + A LA
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSL-----KQALASLRQSAWNVKELDLSGNPLSQISAADLA 55
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
L L+L N + L LS+ L LD+ NN + +
Sbjct: 56 ----PFTKLELLNLSSNVL--YETLDL-ESLST----LRTLDLNNNYVQE---------L 95
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
S+ ++ N+I +++ + Q I L N I +
Sbjct: 96 LVGPSIETLHAANNNI-----SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSR--- 145
Query: 444 VITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISI 503
+ LDL N I L+ + L L + I + ++ +
Sbjct: 146 -VQYLDLKLNEIDTVNFAELAASSD---TLEHLNLQYNFI----YDVKGQVV--FAKLKT 195
Query: 504 LDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALKANEDVAVTS 562
LDL +N L + F+ +T I L N++ + A +Q L+
Sbjct: 196 LDLSSNKLAF-----MGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLE--------H 241
Query: 563 LNLANNFLT 571
+L N
Sbjct: 242 FDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 23/163 (14%), Positives = 49/163 (30%), Gaps = 27/163 (16%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ-LSSVDLRDEGAKAIAEL 269
D ++ L+L N I + L ++L+ +
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDT---------VNFAELAASSDTLEHLNLQYNFIYDVKGQ 187
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ L+ L+L++N + + + + + L N L + K L +
Sbjct: 188 VVFAK-LKTLDLSSNKL-----AFMGPEFQSAAGVTWISLRNNK---L--VLIEKALRFS 236
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372
++L L GN +R S V + ++
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKN------QRVQTVAKQTVK 273
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 44/251 (17%)
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
IK+ G +Q + L L+GN + D + + L ++ L L ++D
Sbjct: 54 DIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNL-------GWLFLDENKIKD---- 101
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
+ LK+ L+ L L +N I + + L+ + SL+L N +
Sbjct: 102 -L-SSLKDLKKLKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKITDI------T 147
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
L L L L N I D + L+ KL L + N IS +
Sbjct: 148 VLSRLTKLDTLSLEDNQISD------IVPLAGLT-KLQNLYLSKNHIS------DLRALA 194
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
K+L + L+ + ++ ++ L T+ D ++ + + + +V
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKNTD---GSLVTPEIISDDGDYEKPNV 250
Query: 445 ITSLDLAYNPI 455
L N +
Sbjct: 251 KWHLPEFTNEV 261
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 48/284 (16%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
+ + + + I +G++ L V +L L+ L D + L N L
Sbjct: 45 IDQIIANNSDIKSVQGIQYL-------PNVTKLFLNGNKLTD------IKPLTNLKNLGW 91
Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
L L+ N I D S L ++SL L N + GL L L+L
Sbjct: 92 LFLDENKIKDLSSLKDL-------KKLKSLSLEHNGISDI------NGLVHLPQLESLYL 138
Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
N I D ++ LS KL L + +N IS + L + L N
Sbjct: 139 GNNKITD------ITVLSRLT-KLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKN 185
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
I D AL + + ++L +K + + ++ N+ + + D +
Sbjct: 186 HISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT-VKNTDGSLVTPEI 238
Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501
E ++ I R++ +
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 7e-11
Identities = 46/239 (19%), Positives = 75/239 (31%), Gaps = 55/239 (23%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL--LKNNSILR 277
NL + D ++ + + + K++ + L N +
Sbjct: 23 TIKDNLKKKSVTD--AVTQNEL---------NSIDQIIANNSDIKSVQGIQYLPN---VT 68
Query: 278 VLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
L LN N + D T+L + L L+ N L L+ K L+ L
Sbjct: 69 KLFLNGNKLTDIKPLTNL-------KNLGWLFLDENKIKDL------SSLKDLKKLKSLS 115
Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396
L N I D ++GL +L L +GNN I+ + L ++L
Sbjct: 116 LEHNGISD------INGLVH-LPQLESLYLGNNKIT------DITVLSRLTKLDTLSLED 162
Query: 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
N I D L + + L N+I R L + L+L
Sbjct: 163 NQISD------IVPLAGLTKLQNLYLSKNHISD------LRALAGLKNLDVLELFSQEC 209
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 52.4 bits (125), Expect = 3e-07
Identities = 47/264 (17%), Positives = 86/264 (32%), Gaps = 58/264 (21%)
Query: 281 LNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
+ I + AE +L S+ ++ +
Sbjct: 6 TVSTPIKQIFPDDAFAE-------TIKDNLKKKSVTDA------VTQNELNSIDQIIANN 52
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
+ I + G+ + L + N ++ + + N K+L W+ L N I
Sbjct: 53 SDIKS------VQGIQYLP-NVTKLFLNGNKLT------DIKPLTNLKNLGWLFLDENKI 99
Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459
+ + +LK + + ++ L N I S I L + SL L N I
Sbjct: 100 -----KDL-SSLKDLKKLKSLSLEHNGI-----SDIN-GLVHLPQLESLYLGNNKI---- 143
Query: 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519
++ VL ++TL L QI S +A + + L L N + D + L
Sbjct: 144 -TDIT-VLSRLTKLDTLSLEDNQI--SDIVPLAGL----TKLQNLYLSKNHISD--LRAL 193
Query: 520 AQSFKVVNEALTSIDLAFNEIRDD 543
A + L ++L E +
Sbjct: 194 AG-----LKNLDVLELFSQECLNK 212
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 47/263 (17%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N + + FD + Q L L+LS N + +G D + ++ L LS +
Sbjct: 38 NKLQSLPHGVFDKLTQ----LTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVI 91
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMI----DYSGFTSLAEALLENSTIRSLHLNGNYGG 315
++ L L+ ++ + ++S F SL + L ++ +
Sbjct: 92 T-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-------RNLIYLDISHTHTR 139
Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-- 373
GL SL L + GNS + + + L LD+ +
Sbjct: 140 VAFNGIFN-GLS---SLEVLKMAGNSF----QENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGA 432
AF+ + SL +N+ N+ + K ++ +D N+I +
Sbjct: 192 PTAFN------SLSSLQVLNMSHNNF-----FSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 433 SAIARVLKDNSVITSLDLAYNPI 455
+ + L+L N
Sbjct: 241 QELQHFPSS---LAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 39/201 (19%)
Query: 270 LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
L++N + L L L++N + + G S ++ + ++ L L+ N
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS--LKYLDLSFN---- 88
Query: 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--K 374
G ++ G + L L +++ ++ L + L LDI +
Sbjct: 89 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN----LIYLDISHTHTRVAFN 143
Query: 375 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434
G F SL + + N + I L+ +T +DL + +A
Sbjct: 144 GIF------NGLSSLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTA 194
Query: 435 IARVLKDNSVITSLDLAYNPI 455
S + L++++N
Sbjct: 195 ----FNSLSSLQVLNMSHNNF 211
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-08
Identities = 40/257 (15%), Positives = 87/257 (33%), Gaps = 47/257 (18%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
S L L N + ++L G+ + +L L + +N +S KG ++ SL
Sbjct: 29 SATRLELESNKL-----QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD--FGTTSLK 81
Query: 391 WINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450
+++L N + ++ + +D +N+ + V + LD+
Sbjct: 82 YLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDI 133
Query: 451 AYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508
++ F+G ++ LK+ + F+ D+ ++ LDL
Sbjct: 134 SHTHTRVAFNGI------FNGLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQ 184
Query: 509 NGLR--DEGA-KCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSL 563
L A L+ L ++++ N D + +L+ L
Sbjct: 185 CQLEQLSPTAFNSLSS--------LQVLNMSHNNFFSLDTFPYKCLNSLQ--------VL 228
Query: 564 NLANNFLTKFGQSALTD 580
+ + N + + L
Sbjct: 229 DYSLNHIMTSKKQELQH 245
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 54/239 (22%)
Query: 361 LAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTIT 418
L++ +N + + G F L ++L N + +G + + ++
Sbjct: 30 ATRLELESNKLQSLPHGVFD------KLTQLTKLSLSSNGLSFKGCC--SQSDFGTTSLK 81
Query: 419 TIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTL 476
+DL N + + ++ + LD ++ + K +SE F N+ L
Sbjct: 82 YLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYL 131
Query: 477 KLGWCQIGASGAEFVADM-------LRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEA 529
+ + + + N+ + + L
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL--PDIFTE-----LRN-------- 176
Query: 530 LTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVY 586
LT +DL+ ++ AF +L+ LN+++N L
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQ--------VLNMSHNNFFSLDTFPYKCLNSLQV 227
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 49/174 (28%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
A F+G L S L+ L ++GN +
Sbjct: 136 THTRVAFNGIFNG-LSS---LEVLKMAGNSF----------------------QENF--- 166
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALG 318
+ ++ L L+L+ + L+ + + ++ L+++ N +L
Sbjct: 167 ------LPDIFTELRNLTFLDLSQCQL-----EQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS 372
+ SL+ L N I + L SS LA L++ N +
Sbjct: 216 TFP----YKCLNSLQVLDYSLNHIMTSKKQELQHFPSS----LAFLNLTQNDFA 261
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 58/287 (20%), Positives = 102/287 (35%), Gaps = 53/287 (18%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAG---VERLQLSSVDLRD----EGA 263
+ L+L+ N + K +C+ + N L+LSS+ L+D
Sbjct: 147 ASFFLNMRRFHVLDLTFNKV-----KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 264 KAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY--GGALGANA 321
N+ + L+L+ N S + + I+SL L+ +Y G + G
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESM-AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260
Query: 322 LAK-------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA- 373
GLE + ++ L + I AL+ + S L L + N I+
Sbjct: 261 FKDPDNFTFKGLEAS-GVKTCDLSKSK-----IFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 374 -KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432
AF LL +NL N +G ++ + L + + +DL N+I +
Sbjct: 315 DDNAFW------GLTHLLKLNLSQNFLG-SIDSRMFENLDK---LEVLDLSYNHIRA--- 361
Query: 433 SAI-ARVLKDNSVITSLDLAYN-----PIGA-DGAKALSEVLKFHGN 472
+ + + L L N P G D +L + + H N
Sbjct: 362 --LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK-IWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 66/348 (18%), Positives = 105/348 (30%), Gaps = 63/348 (18%)
Query: 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-I 304
A V + LS + + + + L L+ L++ + + +
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQD----LQFLKVEQQTPG----LVIRNNTFRGLSSL 81
Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAV 363
L L+ N L A G +L L L ++ + L+S L +
Sbjct: 82 IILKLDYNQFLQLETGAF----NGLANLEVLTLTQCNLDGAVLSGNFFKPLTS----LEM 133
Query: 364 LDIGNN---SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
L + +N I F N + ++L N + E+ Q + T +
Sbjct: 134 LVLRDNNIKKIQPASFFL------NMRRFHVLDLTFNKV-KSICEEDLLNF-QGKHFTLL 185
Query: 421 DLGGNNIHS----KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTL 476
L + N+ IT+LDL+ N AK + + I +L
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT-KIQSL 244
Query: 477 KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL-----------AQSFKV 525
L S + N + GL G K F
Sbjct: 245 ILSNSYNMGSS-------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH 297
Query: 526 VNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLT 571
+ L + LA NEI DD AF L LNL+ NFL
Sbjct: 298 FTD-LEQLTLAQNEINKIDDNAFWGLTHL--------LKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 48/300 (16%), Positives = 97/300 (32%), Gaps = 45/300 (15%)
Query: 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
+ + + L+ N L + + + L+ L + + G + + L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFS----RLQDLQFLKVEQQTPG----LVIRNNTFRGLSSL 81
Query: 362 AVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITT 419
+L + N GAF +L + L ++ + K ++
Sbjct: 82 IILKLDYNQFLQLETGAF------NGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEM 133
Query: 420 IDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS-------EVLKFHGN 472
+ L NNI ++ ++ LDL +N + + + L +L+
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190
Query: 473 ----INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNE 528
+N LGW + G N +I+ LDL NG ++ AK +
Sbjct: 191 TLQDMNEYWLGWEKCGN---------PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
Query: 529 ALTSIDLAFNEIRDDGAFAIAQ----ALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
+ ++N G K E V + +L+ + + +S + DL
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 52/316 (16%), Positives = 93/316 (29%), Gaps = 71/316 (22%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
G L+ L L+ + + + +E L L +++ + +
Sbjct: 96 TGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN- 329
+ VL+L N + + L L+ + L GN
Sbjct: 154 RR---FHVLDLTFNKVKSI--CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 330 ---KSLRELHLHGNSIGDEGIRALMSGLSSRK---------------------------- 358
S+ L L GN + + ++ K
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 359 ------GKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-AD 409
+ D+ + I A K F + L + L N+I KI +
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFS------HFTDLEQLTLAQNEI-----NKIDDN 317
Query: 410 ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKF 469
A + ++L N + S + + K + LDL+YN I A G ++ F
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDK----LEVLDLSYNHIRALGDQS------F 367
Query: 470 HG--NINTLKLGWCQI 483
G N+ L L Q+
Sbjct: 368 LGLPNLKELALDTNQL 383
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 56/263 (21%), Positives = 92/263 (34%), Gaps = 57/263 (21%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
+ + + + I +G++ L V +L L+ L D I L N L
Sbjct: 48 IDQIIANNSDIKSVQGIQYL-------PNVTKLFLNGNKLTD-----IKPL-ANLKNLGW 94
Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
L L+ N + D S L ++SL L N + GL L L+L
Sbjct: 95 LFLDENKVKDLSSLKDL-------KKLKSLSLEHNGISDI------NGLVHLPQLESLYL 141
Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
N I D I L S L+ KL L + +N IS + L + L N
Sbjct: 142 GNNKITD--ITVL-SRLT----KLDTLSLEDNQISD------IVPLAGLTKLQNLYLSKN 188
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
I D AL + + ++L +K + + ++ N+V +
Sbjct: 189 HISD------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT---------- 232
Query: 458 DGAKALSEVLKFHGNINTLKLGW 480
DG+ E++ G+ + W
Sbjct: 233 DGSLVTPEIISDDGDYEKPNVKW 255
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 41/217 (18%)
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
IK+ G +Q + L L+GN + D + + L ++ L L ++D
Sbjct: 57 DIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNL-------GWLFLDENKVKD---- 104
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
LK+ L+ L L +N I + + L+ + SL+L N +
Sbjct: 105 --LSSLKDLKKLKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKITDI------T 150
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
L L L L N I D + L+ KL L + N IS +
Sbjct: 151 VLSRLTKLDTLSLEDNQISD------IVPLAGLT-KLQNLYLSKNHIS------DLRALA 197
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
K+L + L+ + ++ ++ L T+ D
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSN-LVVPNTVKNTD 233
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 54/261 (20%)
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
+ + +L S+ D + + + N+ I + + I+
Sbjct: 19 SDDAFAETIKDNLKKKSVTD------AVTQNELN-SIDQIIANNSDIKS------VQGIQ 65
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
++ + L N + D L + + + L N + LKD
Sbjct: 66 YLPNVTKLFLNGNKLTDI------KPLANLKNLGWLFLDENKVKD------LSSLKDLKK 113
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
+ SL L +N I + L + +L LG +I +L + L
Sbjct: 114 LKSLSLEHNGI-----SDI-NGLVHLPQLESLYLGNNKI------TDITVLSRLTKLDTL 161
Query: 505 DLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
L N + D L + L ++ L+ N I D A A + L L
Sbjct: 162 SLEDNQISDIVPLAGLTK--------LQNLYLSKNHISDLRALAGLKNL--------DVL 205
Query: 564 NLANNFLTKFGQSALTDAKDL 584
L + + ++
Sbjct: 206 ELFSQECLNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 43/252 (17%), Positives = 76/252 (30%), Gaps = 56/252 (22%)
Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
E I + + + ++ S++ A S+ I
Sbjct: 6 ETITVPTPIKQ------IFSDDAFA-ETIKDNLKKKSVTD------AVTQNELNSIDQII 52
Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
+DI ++ +T + L GN + + L + + L L N
Sbjct: 53 ANNSDIKS------VQGIQYLPNVTKLFLNGNKLTD------IKPLANLKNLGWLFLDEN 100
Query: 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
+ K L LK + +L L I + L + + L L N + D
Sbjct: 101 KV-----KDL-SSLKDLKKLKSLSLEHNGIS------DINGLVHLPQLESLYLGNNKITD 148
Query: 514 -EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572
L + L ++ L N+I D A L +L L+ N ++
Sbjct: 149 ITVLSRLTK--------LDTLSLEDNQISDIVPLAGLTKL--------QNLYLSKNHISD 192
Query: 573 FGQSALTDAKDL 584
AL K+L
Sbjct: 193 L--RALAGLKNL 202
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 24/210 (11%)
Query: 208 KAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVD-LRDEGAKAI 266
G+L L+ L+L G + D V L N+ + RL LS + + +
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQTL 163
Query: 267 AELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
L L L+ + E I L+L+G Y L + L+
Sbjct: 164 LSSCSR---LDELNLSWCFDFTEKHVQVAVAHVSET--ITQLNLSG-YRKNLQKSDLSTL 217
Query: 326 LEGNKSLRELHLHG-NSIGDEGIRALMSGLSSRKGKLAVLDI-GNNSISAKGAFHVAEYI 383
+ +L L L + ++ + L L + I + +
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQL-----NYLQHLSLSRCYDIIPETLLELG--- 269
Query: 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQ 413
+L + + + D + + +AL
Sbjct: 270 -EIPTLKTLQV-FGIVPDGTLQLLKEALPH 297
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 33/226 (14%), Positives = 81/226 (35%), Gaps = 29/226 (12%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
V+ + LS+ + I L+ L L + +LA +NS + L
Sbjct: 95 VQHMDLSNSVIEVSTLHGILSQCSK---LQNLSLEGLRLSDPIVNTLA----KNSNLVRL 147
Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHG-NSIGDEGIRALMSGLSSRKGKLAVLDI 366
+L+G G AL L L EL+L ++ ++ ++ +S + L++
Sbjct: 148 NLSGCSG--FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---TITQLNL 202
Query: 367 G--NNSISAKGAFHVAEYIKNCKSLLWINL-YMNDIGDEGAEKIADALKQNRTITTIDLG 423
++ ++ ++ C +L+ ++L + ++ ++ + + L
Sbjct: 203 SGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL----NYLQHLSLS 255
Query: 424 G-NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468
+I + + + + +L + + + L E L
Sbjct: 256 RCYDIIPETLLELGEIPT----LKTLQVFGI-VPDGTLQLLKEALP 296
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 41/255 (16%), Positives = 84/255 (32%), Gaps = 31/255 (12%)
Query: 277 RVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
R+L S R H++ + + + L L L+ L
Sbjct: 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLS 124
Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINL- 394
L G + D + L ++ L L++ + S + +C L +NL
Sbjct: 125 LEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFALQTLLS---SCSRLDELNLS 176
Query: 395 YMNDIGDEGAEKIADALKQN-RTITTIDLGG--NNIHSKGASAIARVLKDNSVITSLDLA 451
+ D ++ + A+ TIT ++L G N+ S + R + + LDL+
Sbjct: 177 WCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN---LVHLDLS 230
Query: 452 YNP-IGADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRAN 509
+ + D + + + L L C I + ++ + L +
Sbjct: 231 DSVMLKNDCFQEFFQ----LNYLQHLSLSRCYDIIPETLLELGEIPT----LKTLQVF-G 281
Query: 510 GLRDEGAKCLAQSFK 524
+ D + L ++
Sbjct: 282 IVPDGTLQLLKEALP 296
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 2e-10
Identities = 100/667 (14%), Positives = 199/667 (29%), Gaps = 215/667 (32%)
Query: 20 QPVLSRSFCQARDAPLSFALPFSGTRR---CFRLKR------------------LVVKAA 58
+ +LS+ D + SGT R K+ L+
Sbjct: 43 KSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 59 ARPEGGRRQRRVYRQSQSDNALTTAPVKQIASFVVPAGVFVSATFVLWKLVEKLLMPKPS 118
R+Y Q D V VS KL + LL +P+
Sbjct: 100 TEQRQPSMMTRMY-IEQRDRLYNDNQV------FAK--YNVSRLQPYLKLRQALLELRPA 150
Query: 119 RPSKPTAEGMNWSVGAGTNLLSGFTGKLFRESKQTLNEFAKE-LRAFSSVDMSGRNFGDE 177
+ +G+ +G+G K + A + ++
Sbjct: 151 K--NVLIDGV---LGSG---------------KTWV---ALDVCLSYKVQ----CKMDF- 182
Query: 178 GLFFLAESLGYNQTAEEV-------------SFAANGITAAGIKAFDGVLQSNIALKTLN 224
+F+L +L + E V ++ + ++ IK + L+ L
Sbjct: 183 KIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK--LRIHSIQAELRRL- 237
Query: 225 LSGNPIGDEGVKCLCDILVDNAGVERLQ-LSSVDL--------RDEGAKAIAELLKNNSI 275
L P CL +L N V+ + ++ +L R K + + L +
Sbjct: 238 LKSKP----YENCL-LVL-LN--VQNAKAWNAFNLSCKILLTTRF---KQVTDFLSAATT 286
Query: 276 LRVLELNNNMIDYSGFT-SLAEALLENSTIRSLHLNGNYGG----ALGANALAKGLEGNK 330
+ L+++ T ++LL +L+ L N + +
Sbjct: 287 THI-SLDHHS---MTLTPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIA-E 335
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH-VAEYIKNCK-- 387
S+R+ ++ L + + S L VL+ + F ++ + +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIES---SLNVLE----PAEYRKMFDRLSVFPPSAHIP 388
Query: 388 ----SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNS 443
SL+W ++ +D+ + + L H S + + K+++
Sbjct: 389 TILLSLIWFDVIKSDV-----MVVVNKL----------------HKY--SLVEKQPKEST 425
Query: 444 V-ITSLDLAYNPIGADGAKALSEVL--------KFHGNINTLKLG----WCQ-IG----- 484
+ I S+ L + + AL + F + + + + IG
Sbjct: 426 ISIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKN 483
Query: 485 ASGAEFVADMLR--YNNTISILDLR--ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNE- 539
E + + R + LD R +R + A ++N T L F +
Sbjct: 484 IEHPERM-TLFRMVF------LDFRFLEQKIRHDSTAWNASG-SILN---TLQQLKFYKP 532
Query: 540 -IRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFG------------QSALTDAKDLVY 586
I D N+ +N +FL K + AL + ++
Sbjct: 533 YICD------------NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 587 EMSEKEV 593
E + K+V
Sbjct: 581 EEAHKQV 587
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 45/265 (16%), Positives = 83/265 (31%), Gaps = 57/265 (21%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
+ + + D D G+ L + E ++ + L L
Sbjct: 21 AIKIAAGKSNVTD------TVTQADLDGITTLSAFGTGVTT------IEGVQYLNNLIGL 68
Query: 280 ELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
EL +N I D + +L + I L L+GN + + G +S++ L L
Sbjct: 69 ELKDNQITDLAPLKNL-------TKITELELSGNPLKNV------SAIAGLQSIKTLDLT 115
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
I D ++ L+ L VL + N I+ + +L ++++
Sbjct: 116 STQITD------VTPLAGLS-NLQVLYLDLNQIT------NISPLAGLTNLQYLSIGNAQ 162
Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458
+ + L +TT+ N I L + + L N I
Sbjct: 163 V-----SDL-TPLANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQI--- 207
Query: 459 GAKALSEVLKFHGNINTLKLGWCQI 483
+S L N+ + L I
Sbjct: 208 --SDVSP-LANTSNLFIVTLTNQTI 229
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 54/247 (21%)
Query: 214 LQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272
+Q L L L N I D +K L +++ ++L K + +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNL------------TKITELELSGNPLKNV-SAIAG 105
Query: 273 NSILRVLELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS 331
++ L+L + I D + L S ++ L+L+ N + L G +
Sbjct: 106 LQSIKTLDLTSTQITDVTPLAGL-------SNLQVLYLDLNQITNI------SPLAGLTN 152
Query: 332 LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391
L+ L + + D ++ L++ KL L +N IS + + +L+
Sbjct: 153 LQYLSIGNAQVSD------LTPLANLS-KLTTLKADDNKISD------ISPLASLPNLIE 199
Query: 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
++L N I D L + + L I ++ N+ + ++
Sbjct: 200 VHLKNNQISDV------SPLANTSNLFIVTLTNQTITNQPVFY-------NNNLVVPNVV 246
Query: 452 YNPIGAD 458
P GA
Sbjct: 247 KGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 44/249 (17%), Positives = 78/249 (31%), Gaps = 54/249 (21%)
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384
+ L G + + G+ L L++ +N I+ +K
Sbjct: 36 TQADLDGITTLSAFGTGVTT------IEGVQYLN-NLIGLELKDNQIT------DLAPLK 82
Query: 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
N + + L N + + A+ ++I T+DL I L S
Sbjct: 83 NLTKITELELSGNPLKN------VSAIAGLQSIKTLDLTSTQITDVTP------LAGLSN 130
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
+ L L N I +S + N+ L +G Q+ S +A++ + ++ L
Sbjct: 131 LQVLYLDLNQI-----TNISPLAGLT-NLQYLSIGNAQV--SDLTPLANL----SKLTTL 178
Query: 505 DLRANGLRD-EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563
N + D L L + L N+I D A L +
Sbjct: 179 KADDNKISDISPLASLPN--------LIEVHLKNNQISDVSPLANTSNL--------FIV 222
Query: 564 NLANNFLTK 572
L N +T
Sbjct: 223 TLTNQTITN 231
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-10
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 317 LGANALAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374
L A + + REL L G I + L + + +D +N I
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPV------IENLGATLDQFDAIDFSDNEIR-- 55
Query: 375 GAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGAS 433
+ + L + + N I +I + L Q +T + L N++
Sbjct: 56 ----KLDGFPLLRRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNNSLVE---L 103
Query: 434 AIARVLKDNSVITSLDLAYNPI 455
L +T L + NP+
Sbjct: 104 GDLDPLASLKSLTYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 19/130 (14%)
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
N R L+L I +L L ++ + N L G
Sbjct: 15 YTNAVRDRELDLRGYKI--PVIENLGATL---DQFDAIDFSDNEIRKL------DGFPLL 63
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
+ L+ L ++ N I + GL L L + NNS+ + + + KSL
Sbjct: 64 RRLKTLLVNNNRICR-----IGEGLDQALPDLTELILTNNSLV---ELGDLDPLASLKSL 115
Query: 390 LWINLYMNDI 399
++ + N +
Sbjct: 116 TYLCILRNPV 125
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 22/131 (16%)
Query: 214 LQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN 272
+ + + L+L G I E + D + + S ++R +
Sbjct: 15 YTNAVRDRELDLRGYKIPVIENLGATLDQF------DAIDFSDNEIRK------LDGFPL 62
Query: 273 NSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKS 331
L+ L +NNN I + E L + + L L N +L L KS
Sbjct: 63 LRRLKTLLVNNNRI-----CRIGEGLDQALPDLTELILTNN---SLVELGDLDPLASLKS 114
Query: 332 LRELHLHGNSI 342
L L + N +
Sbjct: 115 LTYLCILRNPV 125
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 7e-10
Identities = 51/241 (21%), Positives = 78/241 (32%), Gaps = 56/241 (23%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD------EGVKCLCDI-LVDNAGVERLQ 252
N I+ +F L L L N + G+ L + L DNA Q
Sbjct: 42 NRISHVPAASFRACRN----LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-----Q 92
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNG 311
L SVD L L L+ + L L + ++ L+L
Sbjct: 93 LRSVD---------PATFHGLGRLHTLHLDRCGL-----QELGPGLFRGLAALQYLYLQD 138
Query: 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNS 370
N AL + +L L LHGN I + GL S L L + N
Sbjct: 139 NALQALPDDTFR----DLGNLTHLFLHGNRI--SSVPERAFRGLHS----LDRLLLHQNR 188
Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNI 427
++ AF + L+ + L+ N++ + +AL R + + L N
Sbjct: 189 VAHVHPHAFR------DLGRLMTLYLFANNL-----SALPTEALAPLRALQYLRLNDNPW 237
Query: 428 H 428
Sbjct: 238 V 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 34/175 (19%)
Query: 287 DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346
G ++ + + + L+GN + A + ++L L LH N +
Sbjct: 19 PQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFR----ACRNLTILWLHSNVLARID 72
Query: 347 IRALMSGLSSRKGKLAVLDIGNN----SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402
A +GL+ L LD+ +N S+ FH L ++L +
Sbjct: 73 AAAF-TGLAL----LEQLDLSDNAQLRSVDP-ATFH------GLGRLHTLHLDRCGL--- 117
Query: 403 GAEKI-ADALKQNRTITTIDLGGNNIHSKGASAI-ARVLKDNSVITSLDLAYNPI 455
+++ + + + L N + + + +D +T L L N I
Sbjct: 118 --QELGPGLFRGLAALQYLYLQDNALQA-----LPDDTFRDLGNLTHLFLHGNRI 165
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 43/262 (16%), Positives = 75/262 (28%), Gaps = 75/262 (28%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKS 388
+ + + LHGN I + + L +L + +N ++ AF
Sbjct: 33 ASQRIFLHGNRI-----SHVPAASFRACRNLTILWLHSNVLARIDAAAFT------GLAL 81
Query: 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
L ++L N + ++D + +L
Sbjct: 82 LEQLDLS-----------------DNAQLRSVD--------------PATFHGLGRLHTL 110
Query: 449 DLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGASGAEFVADMLRYNNTISILDL 506
L + + L L F G + L L + D R ++ L L
Sbjct: 111 HLDRCGL-----QELGPGL-FRGLAALQYLYLQDNAL----QALPDDTFRDLGNLTHLFL 160
Query: 507 RANGLR--DEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTS 562
N + E A F+ ++ L + L N + AF L +
Sbjct: 161 HGNRISSVPERA------FRGLHS-LDRLLLHQNRVAHVHPHAFRDLGRLM--------T 205
Query: 563 LNLANNFLTKFGQSALTDAKDL 584
L L N L+ AL + L
Sbjct: 206 LYLFANNLSALPTEALAPLRAL 227
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 61/289 (21%), Positives = 99/289 (34%), Gaps = 49/289 (16%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N I + +F + L+ L LS N I + + A + L+L L
Sbjct: 74 NQIQIIKVNSFKHLRH----LEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLT 125
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHL-NGNYGGAL 317
A L K L+ L L NN I S+ ++R L L +
Sbjct: 126 TIPNGAFVYLSK----LKELWLRNNPI-----ESIPSYAFNRIPSLRRLDLGELKRLSYI 176
Query: 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KG 375
A GL +LR L+L ++ + I L + L L LD+ N +SA G
Sbjct: 177 SEGAFE-GLS---NLRYLNLAMCNLRE--IPNL-TPLIK----LDELDLSGNHLSAIRPG 225
Query: 376 AFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASA 434
+F + L + + + I + I +A +++ I+L NN+
Sbjct: 226 SF------QGLMHLQKLWMIQSQI-----QVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274
Query: 435 IARVLKDNSVITSLDLAYNPIGAD-GAKALSEVLKFHGNINTLKLGWCQ 482
+ + L +NP + LS +K NT C
Sbjct: 275 ----FTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCN 319
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 52/225 (23%)
Query: 270 LKNNSI-------------LRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGG 315
L N I L +L+L+ N I ++ + + +L L N
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHI-----RTIEIGAFNGLANLNTLELFDNRLT 125
Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG-NNSIS-- 372
+ A L+EL L N I ++ S +R L LD+G +S
Sbjct: 126 TIPNGAFV----YLSKLKELWLRNNP-----IESIPSYAFNRIPSLRRLDLGELKRLSYI 176
Query: 373 AKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGA 432
++GAF +L ++NL M ++ +I L + +DL GN++ +
Sbjct: 177 SEGAFE------GLSNLRYLNLAMCNL-----REI-PNLTPLIKLDELDLSGNHLSAIRP 224
Query: 433 SAIARVLKDNSVITSLDLAYNPIGADGAKALS-----EVLKFHGN 472
+ ++ + L + + I A + N
Sbjct: 225 GSFQGLMH----LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 61/357 (17%), Positives = 103/357 (28%), Gaps = 123/357 (34%)
Query: 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAE 296
C C Q S V + + + + + N R+L L+ N I +
Sbjct: 39 CSCSN----------QFSKVICVRKNLREVPDGISTN--TRLLNLHENQI-----QIIKV 81
Query: 297 ALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA-LMSGL 354
++ + L L+ N+ + A G +L L L N + I L
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFN----GLANLNTLELFDNRL--TTIPNGAFVYL 135
Query: 355 SSRKGKLAVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412
S L L + NN I + AF+ SL ++L
Sbjct: 136 SK----LKELWLRNNPIESIPSYAFN------RIPSLRRLDLGEL--------------- 170
Query: 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG- 471
R ++ I G + S + L+LA + E+
Sbjct: 171 -KR-LSYISEG--------------AFEGLSNLRYLNLAMCNL--------REIPNLTPL 206
Query: 472 -NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA-NGLRDEGAKCLAQSFKVVNEA 529
++ L L N +S + + GL
Sbjct: 207 IKLDELDL------------------SGNHLSAIRPGSFQGLM----------------H 232
Query: 530 LTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
L + + ++I+ + AF Q+L +NLA+N LT T L
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLV--------EINLAHNNLTLLPHDLFTPLHHL 281
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 63/365 (17%), Positives = 136/365 (37%), Gaps = 55/365 (15%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ + +P E +C+ + Q + DL+ + LK+ L +
Sbjct: 208 LRQFYMGNSPFVAEN---ICEAWENENSEYAQQYKTEDLKWDN-------LKD---LTDV 254
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG----LEGNKSLREL 335
E+ N T L L ++ +++ N G + + ++ +
Sbjct: 255 EVYNC----PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
++ N++ + + + KL +L+ N + + L +NL
Sbjct: 311 YIGYNNLKTFPVETSLQKMK----KLGMLECLYNQLEG-----KLPAFGSEIKLASLNLA 361
Query: 396 MNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNP 454
N I +I A+ + + N + A+ + SV++++D +YN
Sbjct: 362 YNQI-----TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV---SVMSAIDFSYNE 413
Query: 455 IGADGAKALSEVLKFHG---NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN-- 509
IG+ K + N++++ L QI ++F ++ + +S ++L N
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQI----SKFPKELFSTGSPLSSINLMGNML 469
Query: 510 -GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
+ K ++FK LTSIDL FN++ ++ +A + ++L+ N
Sbjct: 470 TEIPKNSLKDENENFK-NTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYN 523
Query: 569 FLTKF 573
+KF
Sbjct: 524 SFSKF 528
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 49/244 (20%), Positives = 76/244 (31%), Gaps = 32/244 (13%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
+ ++ S N IG K + V + LS+ + K EL S L
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS----KFPKELFSTGSPL 459
Query: 277 RVLELNNNM---IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
+ L NM I + E + S+ L N L + A L L
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL---PYLV 516
Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF--HVAEYIKNCKSLLW 391
+ L NS S+ L I N + E I C SL
Sbjct: 517 GIDLSYNSF--SKFPTQPLNSST----LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLA 451
+ + NDI K+ + + N I+ +D+ N S S + ++ L
Sbjct: 571 LQIGSNDI-----RKVNEKITPN--ISVLDIKDNPNISIDLSYVCPYIE----AGMYMLF 619
Query: 452 YNPI 455
Y+
Sbjct: 620 YDKT 623
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 61/386 (15%), Positives = 122/386 (31%), Gaps = 76/386 (19%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ L L + + N E+ Q + + + S L
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE--DFSDLIKD 164
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
+N++ S+ ++ + N ++K + LR+ ++
Sbjct: 165 CINSD----PQQKSIKKSSRITLKDTQIGQLSN-----NITFVSKAVMRLTKLRQFYMGN 215
Query: 340 NSIGDEGIRALMSGLSSRKG--------------KLAVLDIGNNSISAKGAFHVAEYIKN 385
+ E I +S L +++ N K + ++K
Sbjct: 216 SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKA 271
Query: 386 CKSLLWINLYMNDIGDEGAEKIADALK------QNRTITTIDLGGNNIHSKGASAIARVL 439
+ IN+ N E++ D + I I +G NN+ + + L
Sbjct: 272 LPEMQLINVACNRG--ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSL 326
Query: 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNIN---------TLKLGWCQIGASGAEF 490
+ + L+ YN + G + +L L + QI E
Sbjct: 327 QKMKKLGMLECLYN--------------QLEGKLPAFGSEIKLASLNLAYNQI----TEI 368
Query: 491 VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN-EALTSIDLAFNEIR--DDGAFA 547
A+ + + L N L+ + F + +++ID ++NEI D F
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 548 IAQALKANEDVAVTSLNLANNFLTKF 573
+ V+S+NL+NN ++KF
Sbjct: 424 PLDPTPFK-GINVSSINLSNNQISKF 448
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 55/429 (12%), Positives = 130/429 (30%), Gaps = 112/429 (26%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
+G + +N++ + V + + + ++S +
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD--LIKDCINSDPQQ 172
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY--GGAL 317
K+I + + + +N I T +++A++ + +R ++ + +
Sbjct: 173 ----KSIKKSSRITLKDTQIGQLSNNI-----TFVSKAVMRLTKLRQFYMGNSPFVAENI 223
Query: 318 GANALAKGLEGN-------------------------------------KSLRELHLHGN 340
+ E ++ +++ N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283
Query: 341 SI-GDEGIRALMSGLSS--RKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
E ++ L+ K+ ++ IG N++ F V ++ K L + N
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT---FPVETSLQKMKKLGMLECLYN 340
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457
+ E A + +++L N I A + +L A+N +
Sbjct: 341 QL-----EGKLPAFGSEIKLASLNLAYNQITE----IPANFCGFTEQVENLSFAHNKL-- 389
Query: 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAK 517
K + + +++ + +D N + K
Sbjct: 390 ---KYIPNIF-DAKSVSVMS-------------------------AIDFSYNEIGSVDGK 420
Query: 518 CL----AQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTSLNLANNFLT 571
FK +N ++SI+L+ N+I F+ L +S+NL N LT
Sbjct: 421 NFDPLDPTPFKGIN--VSSINLSNNQISKFPKELFSTGSPL--------SSINLMGNMLT 470
Query: 572 KFGQSALTD 580
+ +++L D
Sbjct: 471 EIPKNSLKD 479
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 48/369 (13%), Positives = 113/369 (30%), Gaps = 73/369 (19%)
Query: 231 GDEGVKCLCDILVDNAG-VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289
GV ++ G V L L AI +L + L VL L ++ +
Sbjct: 71 AQPGVSL------NSNGRVTGLSLEGFGASGRVPDAIGQLTE----LEVLALGSHGEKVN 120
Query: 290 GFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349
+ + N + + ++ + L + I + +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRM-------HYQKTFVDYDPREDFSDLIKDCINSDPQQK 173
Query: 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIA- 408
+ S K + +N+I+ V++ + L + + E +
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNIT-----FVSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228
Query: 409 ----DALKQNRTI----------TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN- 453
+ +Q +T T +++ +K + + + + + +++A N
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE----MQLINVACNR 284
Query: 454 ----PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509
D +AL++ I + +G+ + E ++ + +L+ N
Sbjct: 285 GISGEQLKDDWQALAD-APVGEKIQIIYIGYNNLKTFPVETSLQKMK---KLGMLECLYN 340
Query: 510 ---GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD--DGAFAIAQALKANEDVAVTSLN 564
G L S++LA+N+I + + + +L+
Sbjct: 341 QLEGKLPAFGSE---------IKLASLNLAYNQITEIPANFCGFTEQV--------ENLS 383
Query: 565 LANNFLTKF 573
A+N L
Sbjct: 384 FAHNKLKYI 392
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 51/268 (19%), Positives = 83/268 (30%), Gaps = 62/268 (23%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI-------LVDNAGVERLQ 252
N I F + L+ L L N I V + L DN
Sbjct: 85 NNIQMIQADTFRHLHH----LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN------W 134
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHL-N 310
L+ + + + S LR L L NN I S+ ++ L L
Sbjct: 135 LTVIP---------SGAFEYLSKLRELWLRNNPI-----ESIPSYAFNRVPSLMRLDLGE 180
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
+ A GL +L+ L+L +I D + L + L L L++ N
Sbjct: 181 LKKLEYISEGAFE-GLF---NLKYLNLGMCNIKD--MPNL-TPLVG----LEELEMSGNH 229
Query: 371 ISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNI 427
G+F SL + + + + I +A ++ ++L NN+
Sbjct: 230 FPEIRPGSF------HGLSSLKKLWVMNSQV-----SLIERNAFDGLASLVELNLAHNNL 278
Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPI 455
S + L L +NP
Sbjct: 279 SSLPHDL----FTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 40/215 (18%), Positives = 74/215 (34%), Gaps = 39/215 (18%)
Query: 267 AELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKG 325
A+ ++ L VL+L N I + +++ +L L N+ + + A
Sbjct: 92 ADTFRHLHHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE-- 144
Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG-NNSIS--AKGAFHVAEY 382
LREL L N I ++ S +R L LD+G + ++GAF
Sbjct: 145 --YLSKLRELWLRNNP-----IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE---- 193
Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
+L ++NL M +I D L + +++ GN+ + +
Sbjct: 194 --GLFNLKYLNLGMCNIKD------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS-- 243
Query: 443 SVITSLDLAYNPIGADGAKALS-----EVLKFHGN 472
+ L + + + A L N
Sbjct: 244 --LKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 35/223 (15%), Positives = 62/223 (27%), Gaps = 64/223 (28%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270
G + L+ L L N + S+ +
Sbjct: 140 SGAFEYLSKLRELWLRNN-----------------------PIESIP---------SYAF 167
Query: 271 KNNSILRVLEL-NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEG 328
L L+L + ++E E ++ L+L + L
Sbjct: 168 NRVPSLMRLDLGELKKL-----EYISEGAFEGLFNLKYLNLGMCNIKDMPN------LTP 216
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAEYIKNC 386
L EL + GN + G L L + N+ +S + AF
Sbjct: 217 LVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD------GL 265
Query: 387 KSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
SL+ +NL N++ + D R + + L N +
Sbjct: 266 ASLVELNLAHNNL-----SSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 53/342 (15%), Positives = 93/342 (27%), Gaps = 113/342 (33%)
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLN 310
Q S V G + + + +N R L L N I + + + L L
Sbjct: 55 QFSKVVCTRRGLSEVPQGIPSN--TRYLNLMENNI-----QMIQADTFRHLHHLEVLQLG 107
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNN 369
N + A G SL L L N + I + LS L L + NN
Sbjct: 108 RNSIRQIEVGAFN----GLASLNTLELFDNWL--TVIPSGAFEYLSK----LRELWLRNN 157
Query: 370 SISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
I + AF+ SL+ ++L + + I
Sbjct: 158 PIESIPSYAFN------RVPSLMRLDLGEL----------------KK-LEYIS------ 188
Query: 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG--NINTLKLGWCQIGA 485
+ + L+L I ++ + L++
Sbjct: 189 --------EGAFEGLFNLKYLNLGMCNI--------KDMPNLTPLVGLEELEM------- 225
Query: 486 SGAEFVADMLRYNNTISILDLRA-NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--D 542
N + + +GL +L + + +++ +
Sbjct: 226 -----------SGNHFPEIRPGSFHGLS----------------SLKKLWVMNSQVSLIE 258
Query: 543 DGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKDL 584
AF +L LNLA+N L+ T + L
Sbjct: 259 RNAFDGLASL--------VELNLAHNNLSSLPHDLFTPLRYL 292
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 42/239 (17%), Positives = 79/239 (33%), Gaps = 55/239 (23%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
NL + D K L + + + + +++ ++ + L+
Sbjct: 21 AVKQNLGKQSVTDLVSQKEL------------SGVQNFNGDNSNIQSL-AGMQFFTNLKE 67
Query: 279 LELNNNMI-DYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHL 337
L L++N I D S L + + L +N N L G+ + L L L
Sbjct: 68 LHLSHNQISDLSPLKDL-------TKLEELSVNRNRLKNL------NGIP-SACLSRLFL 113
Query: 338 HGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397
N + D L K L +L I NN + + L ++L+ N
Sbjct: 114 DNNELRD------TDSLIHLK-NLEILSIRNNKLK------SIVMLGFLSKLEVLDLHGN 160
Query: 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456
+I + L + + + IDL G ++ +K + + +P G
Sbjct: 161 EITN------TGGLTRLKKVNWIDLTGQKCVNE-------PVKYQPELYITNTVKDPDG 206
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 50/235 (21%)
Query: 220 LKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRV 278
++ N + I G++ ++ + L LS + D + LK+ + L
Sbjct: 43 VQNFNGDNSNIQSLAGMQFFTNL-------KELHLSHNQISD-----L-SPLKDLTKLEE 89
Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
L +N N + +L + ++ + L L+ N L K+L L +
Sbjct: 90 LSVNRNRL-----KNLNG--IPSACLSRLFLDNNELRDT------DSLIHLKNLEILSIR 136
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N + + L KL VLD+ N I+ + K + WI+L
Sbjct: 137 NNKLKS------IVMLGFLS-KLEVLDLHGNEIT------NTGGLTRLKKVNWIDLTGQK 183
Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
+E + + L T+ D G I + + + +
Sbjct: 184 CVNEPVKYQPE-LYITNTVKDPD--GRWISPYY-------ISNGGSYVDGCVLWE 228
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 29/197 (14%), Positives = 64/197 (32%), Gaps = 41/197 (20%)
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI 383
+ ++ + ++I ++G+ L L + +N IS +
Sbjct: 35 VSQKELSGVQNFNGDNSNIQS------LAGMQFFT-NLKELHLSHNQIS------DLSPL 81
Query: 384 KNCKSLLWINLYMNDIGD-EGAE------------KIAD--ALKQNRTITTIDLGGNNIH 428
K+ L +++ N + + G ++ D +L + + + + N +
Sbjct: 82 KDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK 141
Query: 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488
S +L S + LDL N I L +N + L +
Sbjct: 142 S------IVMLGFLSKLEVLDLHGNEI-----TNTGG-LTRLKKVNWIDLTGQKCVNEPV 189
Query: 489 EFVADMLRYNNTISILD 505
++ + L NT+ D
Sbjct: 190 KYQPE-LYITNTVKDPD 205
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-08
Identities = 44/270 (16%), Positives = 89/270 (32%), Gaps = 21/270 (7%)
Query: 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244
S ++ + S A N + AA ++ + G LK ++ + ++
Sbjct: 14 SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTD-------IIK 66
Query: 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI 304
+ ++RL + + + +L S L+ L L N + + L E +
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLE--ATGPDL 123
Query: 305 RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
L+L A L+ L + + + L+ L
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPA----LSTL 178
Query: 365 DIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLG 423
D+ +N + A +L + L + E + AL R + +DL
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGM--ETPSGVCSALAAARVQLQGLDLS 236
Query: 424 GNNIHSKGASAIARVLKDNSVITSLDLAYN 453
N++ +A A S + SL+L++
Sbjct: 237 HNSLRD---AAGAPSCDWPSQLNSLNLSFT 263
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 36/262 (13%)
Query: 133 GAGTNLLSGFTGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA 192
G G +L + K L + + LF LG +
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSL-KRLTVRAARIPSRILFGALRVLGISGL- 97
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+E++ +T G + + L LNL G++ L
Sbjct: 98 QELTLENLEVT--GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN--STIRSLHLN 310
++ + + + L L+L++N G L AL T++ L L
Sbjct: 156 IAQAHSLNFSCEQVRVF----PALSTLDLSDNPE--LGERGLISALCPLKFPTLQVLALR 209
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDE--------------------GIRAL 350
A L+ L L NS+ D G++ +
Sbjct: 210 NAGMETPSGVCSA-LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 351 MSGLSSRKGKLAVLDIGNNSIS 372
GL + KL+VLD+ N +
Sbjct: 269 PKGLPA---KLSVLDLSYNRLD 287
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 33/222 (14%), Positives = 67/222 (30%), Gaps = 30/222 (13%)
Query: 212 GVLQSNIALKTLNLSGNPI---GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
+ +L LNL GNP G+ + L + + +
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---------RK 168
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLE 327
+ L LE++ + + S L++ + L L+ L ++
Sbjct: 169 DFAGLTFLEELEIDASDL-----QSYEPKSLKSIQNVSHLILHMKQHILLLEIF----VD 219
Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
S+ L L + L +G ++ K N I+ + F V + +
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR--NVKITDESLFQVMKLLNQIS 277
Query: 388 SLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNIH 428
LL + N + + + + ++ I L N
Sbjct: 278 GLLELEFSRNQL-----KSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 39/273 (14%), Positives = 78/273 (28%), Gaps = 62/273 (22%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVD 257
N IT + L+ L L+ N I +E +E L LS
Sbjct: 62 NRITYISNSDLQRCVN----LQALVLTSNGINTIEEDS------FSSLGSLEHLDLSYNY 111
Query: 258 LRDEGAKAI-AELLKNNSILRVLELNNNMI----DYSGFTSL----AEALLENSTIRSLH 308
L + + K S L L L N + S F+ L + T +
Sbjct: 112 L-----SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 309 LNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368
K G L EL + + +++ ++ L +
Sbjct: 167 --------------RKDFAGLTFLEELEIDASD-----LQSYEPKSLKSIQNVSHLILHM 207
Query: 369 NSISA--KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI----ADALKQNRTITTIDL 422
+ S+ + L D+ ++ ++L + T + +
Sbjct: 208 KQHILLLEIFV------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261
Query: 423 GGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
++ + ++L S + L+ + N +
Sbjct: 262 TDESLFQ-----VMKLLNQISGLLELEFSRNQL 289
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 25/164 (15%), Positives = 55/164 (33%), Gaps = 24/164 (14%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE-L 269
L+ L + + + + + + +S + L + + E
Sbjct: 167 RKDFAGLTFLEELEIDASDL-----QSYEPKSLKSIQ----NVSHLILHMKQHILLLEIF 217
Query: 270 LKNNSILRVLELNNNMIDYSGFTSL----AEALLENSTIRSLHLNGNYGGALGANALAKG 325
+ S + LEL + +D F+ L +L++ T R++ + + K
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-----SLFQVMKL 272
Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
L L EL N ++++ G+ R L + + N
Sbjct: 273 LNQISGLLELEFSRNQ-----LKSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 5e-05
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
D ++ L L + L N+ +++ +V +
Sbjct: 208 KQHILLLEIFVDVTSS----VECLELRDTDLDTFHFSELSTG-ETNSLIKKFTFRNVKIT 262
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGN 312
DE + +LL S L LE + N + S+ + + + ++++ + L+ N
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQL-----KSVPDGIFDRLTSLQKIWLHTN 311
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 6e-08
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
++EL L + + + L +L L N ++ + L
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFE----ELEFLSTINVGLT------SIANLPKLNKL 66
Query: 390 LWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSL 448
+ L N + + L + +T ++L GN I + LK + SL
Sbjct: 67 KKLELSDNRV-----SGGLEVLAEKCPNLTHLNLSGNKIKDL---STIEPLKKLENLKSL 118
Query: 449 DLAYNPI 455
DL +
Sbjct: 119 DLFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)
Query: 264 KAIAELLKNNSI--LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321
+ I L+N + ++ L L+N+ + L + + L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEF---EELEFLSTINVG-------- 53
Query: 322 LAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379
L L L++L L N + + L+ + L L++ N I
Sbjct: 54 LTSIANLPKLNKLKKLELSDNRVSG-----GLEVLAEKCPNLTHLNLSGNKIK---DLST 105
Query: 380 AEYIKNCKSLLWINLYMNDI 399
E +K ++L ++L+ ++
Sbjct: 106 IEPLKKLENLKSLDLFNCEV 125
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 9e-08
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 25/155 (16%)
Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
L + +RVL L + + T L L + + L L+ N AL L
Sbjct: 435 VLKMEYADVRVLHLAHKDL-----TVL-CHLEQLLLVTHLDLSHN-----RLRALPPALA 483
Query: 328 GNKSLRELHLHGNSIGD-EGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC 386
+ L L N++ + +G+ L +L L + NN + + + +C
Sbjct: 484 ALRCLEVLQASDNALENVDGVANL--------PRLQELLLCNNRLQQ---SAAIQPLVSC 532
Query: 387 KSLLWINLYMNDIGDEGA--EKIADALKQNRTITT 419
L+ +NL N + E E++A+ L +I T
Sbjct: 533 PRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 41/225 (18%), Positives = 77/225 (34%), Gaps = 35/225 (15%)
Query: 214 LQSNIALKTLNLSGN-----PIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
++ L LS E K L ++ +N L + + + E
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKE 403
Query: 269 LLKNNSILRVLE----LNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
L+ S L+ ++ + + + +E + +R LHL L
Sbjct: 404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK--------DLTV 455
Query: 325 --GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382
LE + L L N +RAL L++ + L VL +N++ +V
Sbjct: 456 LCHLEQLLLVTHLDLSHN-----RLRALPPALAALR-CLEVLQASDNALE-----NVDG- 503
Query: 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
+ N L + L N + A + L + ++L GN++
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQP---LVSCPRLVLLNLQGNSL 545
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 21/168 (12%)
Query: 233 EGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFT 292
+GV C + V + LSS L + A++ L + + L L L+N+
Sbjct: 43 DGVTC------RDDKVTSIDLSSKPLNVGFS-AVSSSLLSLTGLESLFLSNS-----HIN 90
Query: 293 SLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
++++ SL L+ N G + L L+ L++ N++ G +
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTL---TSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
L+S L VLD+ NSIS C L + + N I
Sbjct: 148 LKLNS----LEVLDLSANSISGANVVGWV-LSDGCGELKHLAISGNKI 190
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 83/383 (21%), Positives = 134/383 (34%), Gaps = 85/383 (22%)
Query: 220 LKTLNLSGNPIGDE--GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILR 277
L++L LS + I G KC + L LS L G L + S L+
Sbjct: 79 LESLFLSNSHINGSVSGFKCSAS-------LTSLDLSRNSL--SGPVTTLTSLGSCSGLK 129
Query: 278 VLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL-GANALAKGLEGN-KSLREL 335
L +++N +D+ G S L +++ L L+ N + GAN + L L+ L
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKL---NSLEVLDLSANS---ISGANVVGWVLSDGCGELKHL 183
Query: 336 HLHGNSIGDEGIRALMSG------LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
+ GN I SG + L LD+ +N+ S + +C +L
Sbjct: 184 AISGNKI---------SGDVDVSRCVN----LEFLDVSSNNFS--TGIPF---LGDCSAL 225
Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
+++ N + G + A+ + +++ N + L L
Sbjct: 226 QHLDISGNKL--SG--DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL------QYLS 275
Query: 450 LAYN----PIGADGAKALS--EVL-----KFHGNI----------NTLKLGWCQIGASGA 488
LA N I + A L F+G + +L L SG
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF--SG- 332
Query: 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548
E D L + +LDL N E L +S ++ +L ++DL+ N I
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGE----LPESLTNLSASLLTLDLSSNNFSGP----I 384
Query: 549 AQALKANEDVAVTSLNLANNFLT 571
L N + L L NN T
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFT 407
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 65/313 (20%), Positives = 108/313 (34%), Gaps = 56/313 (17%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY-GGALGANALAKGLEGNKSLRE 334
L+ L L NN +G + L S + SLHL+ NY G + ++ L LR+
Sbjct: 396 LQELYLQNNGF--TG--KIPPTLSNCSELVSLHLSFNYLSGTIPSS-----LGSLSKLRD 446
Query: 335 LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINL 394
L L N + EG + L K L L + N ++ G + + NC +L WI+L
Sbjct: 447 LKLWLNML--EG--EIPQELMYVK-TLETLILDFNDLT--G--EIPSGLSNCTNLNWISL 497
Query: 395 YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN- 453
N + E I + + + + L N+ G I L D + LDL N
Sbjct: 498 SNNRLTGE----IPKWIGRLENLAILKLSNNSFS--G--NIPAELGDCRSLIWLDLNTNL 549
Query: 454 -----PIGADGAKALSEVLKFHGNI-----NTLKLGWCQIGASGAEFVADMLRYNNTIS- 502
P G N C + EF N +S
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 503 --ILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF--AIAQALKANEDV 558
++ + + N ++ +D+++N + G I +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDN-----NGSMMFLDMSYNML--SGYIPKEIGS-MP----- 656
Query: 559 AVTSLNLANNFLT 571
+ LNL +N ++
Sbjct: 657 YLFILNLGHNDIS 669
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 19/126 (15%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
++REL L D I L + L L + N + + L
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFV----NLEFLSLINVGLI------SVSNLPKLPKLK 74
Query: 391 WINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
+ L N I D L + +T ++L GN + + LK + SLD
Sbjct: 75 KLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLKDI---STLEPLKKLECLKSLD 126
Query: 450 LAYNPI 455
L +
Sbjct: 127 LFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 215 QSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNS 274
++ A++ L L D ++ L V+ +E L L +V L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVN---LEFLSLINVGLIS------VSNLPKLP 71
Query: 275 ILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALGANALAKGLEGNKSLR 333
L+ LEL+ N I + L E + L+L+GN + + L+ + L+
Sbjct: 72 KLKKLELSENRI-----FGGLDMLAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLK 123
Query: 334 ELHLHGNSI 342
L L +
Sbjct: 124 SLDLFNCEV 132
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 50/366 (13%), Positives = 90/366 (24%), Gaps = 107/366 (29%)
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN 273
L N L L N + + + + L + L + N
Sbjct: 81 LSQNTNLTYLACDSNKLTN-------LDVTPLTKLTYLNCDTNKLTKLD-------VSQN 126
Query: 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
+L L N + T + + N+ + L + N + L
Sbjct: 127 PLLTYLNCARNTL-----TEI--DVSHNTQLTELDCHLN------KKITKLDVTPQTQLT 173
Query: 334 ELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWIN 393
L N I + + S L L+ N+I+ + L +++
Sbjct: 174 TLDCSFNKITELDV----SQNK----LLNRLNCDTNNITKLD-------LNQNIQLTFLD 218
Query: 394 LYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453
N + D + +T D N + S S +T+L
Sbjct: 219 CSSNKL------TEID-VTPLTQLTYFDCSVNPLTELDVST-------LSKLTTLHCIQT 264
Query: 454 PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513
+ + N + I LD+
Sbjct: 265 DL---------LEIDLTHNTQLIYF---------------QAEGCRKIKELDVTH----- 295
Query: 514 EGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
N L +D I + L +++ + L L N LT+
Sbjct: 296 -------------NTQLYLLDCQAAGITE---------LDLSQNPKLVYLYLNNTELTEL 333
Query: 574 GQSALT 579
S T
Sbjct: 334 DVSHNT 339
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 47/314 (14%), Positives = 89/314 (28%), Gaps = 88/314 (28%)
Query: 279 LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLH 338
D L +T+ SL + + + G+E L +L
Sbjct: 26 AAFEMQATDTISEEQL-------ATLTSLDCHNSSITDM------TGIEKLTGLTKLICT 72
Query: 339 GNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398
N+I + L L +N ++ + L ++N N
Sbjct: 73 SNNITTLDLSQN--------TNLTYLACDSNKLTNL-------DVTPLTKLTYLNCDTNK 117
Query: 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN----P 454
+ + QN +T ++ N + + N+ +T LD N
Sbjct: 118 LTK-------LDVSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITK 163
Query: 455 IGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY----NNTISILDLRANG 510
+ L+ + I L + + +L N I+ LDL N
Sbjct: 164 LDVTPQTQLTTLDCSFNKITELDVSQNK-----------LLNRLNCDTNNITKLDLNQN- 211
Query: 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFL 570
LT +D + N++ + + +T + + N L
Sbjct: 212 -----------------IQLTFLDCSSNKLTE---------IDVTPLTQLTYFDCSVNPL 245
Query: 571 TKFGQSALTDAKDL 584
T+ S L+ L
Sbjct: 246 TELDVSTLSKLTTL 259
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 51/316 (16%), Positives = 100/316 (31%), Gaps = 74/316 (23%)
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ + L L+ +N+ I T + + + + + L N L L N
Sbjct: 38 EEQLATLTSLDCHNSSI-----TDM-TGIEKLTGLTKLICTSNNITTLD-------LSQN 84
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
+L L N + + + L KL L+ N ++ + L
Sbjct: 85 TNLTYLACDSNKLTNLDVTPLT--------KLTYLNCDTNKLTKLD-------VSQNPLL 129
Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449
++N N + +I + N +T +D N +K + + +T+LD
Sbjct: 130 TYLNCARNTL-----TEID--VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLD 176
Query: 450 LAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509
++N I L + + +N L I + + N ++ LD +N
Sbjct: 177 CSFNKI-----TELD--VSQNKLLNRLNCDTNNI--TKLDL-----NQNIQLTFLDCSSN 222
Query: 510 GLRDEGAKCLAQSFKVVN-EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568
L V LT D + N + + L + +T+L+
Sbjct: 223 KL---------TEIDVTPLTQLTYFDCSVNPLTE---------LDVSTLSKLTTLHCIQT 264
Query: 569 FLTKFGQSALTDAKDL 584
L + + T
Sbjct: 265 DLLEIDLTHNTQLIYF 280
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 58/223 (26%)
Query: 214 LQSNIALKTLNLSGNPIGDEGVKCLCDI----LVDNAGVERLQLSSVDLRDEGAKAIAEL 269
+ L + S NP+ + V L + + L +D
Sbjct: 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT------DLLEID------------ 270
Query: 270 LKNNSILRVLELNNN----MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
L +N+ L + +D + T L + + I L L+
Sbjct: 271 LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS--------------- 315
Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
N L L+L+ + + + KL L N I +
Sbjct: 316 --QNPKLVYLYLNNTELTELDVSHNT--------KLKSLSCVNAHIQD------FSSVGK 359
Query: 386 CKSLLWINLYMNDIGDEGAEKI-ADALKQNRTITTIDLGGNNI 427
+L E + ++L + +D GN +
Sbjct: 360 IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 31/173 (17%), Positives = 55/173 (31%), Gaps = 29/173 (16%)
Query: 261 EGAKAIAEL-LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319
+ + E + +EL+ + L + L L+ N
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGM---IPPIEKMDATLSTLKACKHLALSTN------- 58
Query: 320 NALAK--GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377
+ K L G ++LR L L N I + L + L L I N I+
Sbjct: 59 -NIEKISSLSGMENLRILSLGRNLIKK------IENLDAVADTLEELWISYNQIA----- 106
Query: 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430
I+ +L + + N I + D L + + L GN +++
Sbjct: 107 -SLSGIEKLVNLRVLYMSNNKITN---WGEIDKLAALDKLEDLLLAGNPLYND 155
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 29/141 (20%), Positives = 50/141 (35%), Gaps = 22/141 (15%)
Query: 206 GIKAFDGVLQSNIALKTLNLSGNPIGD-EGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264
I+ D L + A K L LS N I + + ++ L L ++
Sbjct: 36 PIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENL-------RILSLGRNLIKK---- 84
Query: 265 AIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324
I L L L ++ N I SL + + +R L+++ N +
Sbjct: 85 -IENLDAVADTLEELWISYNQI-----ASL-SGIEKLVNLRVLYMSNNK---ITNWGEID 134
Query: 325 GLEGNKSLRELHLHGNSIGDE 345
L L +L L GN + ++
Sbjct: 135 KLAALDKLEDLLLAGNPLYND 155
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 39/201 (19%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N + + + L LNL + V L L ++DL
Sbjct: 41 NLLYTFSLATLMPYTR----LTQLNLDRAELTKLQVD---GTLP--------VLGTLDLS 85
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALG 318
+++ L + L VL+++ N + TSL L ++ L+L GN L
Sbjct: 86 HNQLQSLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGA 376
L L +L L N+ + L +GL + L L + NS+ KG
Sbjct: 141 PGLLTP-T---PKLEKLSLANNN-----LTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 377 FHVAEYIKNCKSLLWINLYMN 397
F L + L+ N
Sbjct: 192 F-------GSHLLPFAFLHGN 205
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 49/369 (13%), Positives = 111/369 (30%), Gaps = 52/369 (14%)
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERL--QLSSVDLRDEGAKAIA 267
V +++ L+L I + L + L SV +
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM------- 215
Query: 268 ELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327
+ L++ + N + + L T+ ++ L + L +
Sbjct: 216 -SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274
Query: 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK--GAFHVAEYIKN 385
+ + L+++ +I + R + + L + + N +
Sbjct: 275 -PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY------SV 327
Query: 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445
+ L ++D + T ++ N + + + +
Sbjct: 328 FAEMNIKMLSISDTPFI----HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR----L 379
Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML-RYNNTISIL 504
+L L N + K +V N+++L+ + S D + +I +L
Sbjct: 380 QTLILQRNGL-----KNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVL 433
Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED--VAVTS 562
+L +N L +CL + +DL N I ++ + A+
Sbjct: 434 NLSSNMLTGSVFRCLPPK-------VKVLDLHNNRI---------MSIPKDVTHLQALQE 477
Query: 563 LNLANNFLT 571
LN+A+N L
Sbjct: 478 LNVASNQLK 486
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 31/207 (14%), Positives = 63/207 (30%), Gaps = 39/207 (18%)
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
+ + + LS + + C L + D + + L
Sbjct: 321 KEALYSVFAEMNIKMLSISDTPFIHMVCP-PSPSS---FTFLNFTQNVFTDSVFQGCSTL 376
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
+ L+ L L N G + + L + SL +L ++A +
Sbjct: 377 KR----LQTLILQRN-----GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 330 KSLRELHLHGNSIGDE-----------------GIRALMSGLSSRKGKLAVLDIGNNSIS 372
+S+ L+L N + I ++ + + L L++ +N +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLK 486
Query: 373 A--KGAFHVAEYIKNCKSLLWINLYMN 397
+ G F SL +I L+ N
Sbjct: 487 SVPDGVF------DRLTSLQYIWLHDN 507
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 34/180 (18%), Positives = 61/180 (33%), Gaps = 39/180 (21%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+ L+ N + L ++ A ++ L + + L + EL L +
Sbjct: 102 LEYLDACDNRL-----STLPELP---ASLKHLDVDNNQLT-----MLPELPAL---LEYI 145
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
+NN + T L E +++ L + N L L + E SL L +
Sbjct: 146 NADNNQL-----TMLPELP---TSLEVLSVRNN---QL--TFLPELPE---SLEALDVST 189
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
N + E + A+ + N I+ H+ E I + I L N +
Sbjct: 190 NLL--ESLPAVPVRNHHSEETEIFFRCRENRIT-----HIPENILSLDPTCTIILEDNPL 242
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 54/236 (22%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L L+ + L D L + L+++ L ++ EL + L L
Sbjct: 61 FSELQLNRLNL-----SSLPDNLPPQ--ITVLEITQNALI-----SLPELPAS---LEYL 105
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
+ +N + ++L E ++++ L ++ N L E L ++
Sbjct: 106 DACDNRL-----STLPELP---ASLKHLDVDNNQLTMLP--------ELPALLEYINADN 149
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
N + + L L VL + NN ++ + E ++ ++L ++ N +
Sbjct: 150 NQL---------TMLPELPTSLEVLSVRNNQLT-----FLPELPESLEAL---DVSTNLL 192
Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455
+ T N I I + ++ L NP+
Sbjct: 193 -ESLPAVPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPL 242
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 56/361 (15%), Positives = 124/361 (34%), Gaps = 88/361 (24%)
Query: 220 LKTLNLSGNPIGD--EGVKCLCDILVDNAGVERL-----QLSSVDLRDEGAKAIAELLKN 272
L++L S N + + E + L +LVDN ++ L L + + + + + EL +
Sbjct: 93 LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNS 152
Query: 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSL 332
+ L++++++NN + L + ++ + N L L+ L
Sbjct: 153 SF-LKIIDVDNNSL-----KKLPDLP---PSLEFIAAGNNQLEEL------PELQNLPFL 197
Query: 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392
++ NS+ L L + GNN + + E ++N L I
Sbjct: 198 TAIYADNNSL---------KKLPDLPLSLESIVAGNNILE-----ELPE-LQNLPFLTTI 242
Query: 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY 452
N + + + D + +++ N + + + +T LD++
Sbjct: 243 YADNNLL-----KTLPDLPPS---LEALNVRDNYLTD--------LPELPQSLTFLDVSE 286
Query: 453 NPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512
N LSE+ N+ L +I + ++ L++ N L
Sbjct: 287 NIF-----SGLSELP---PNLYYLNASSNEIRSLCDLP--------PSLEELNVSNNKL- 329
Query: 513 DEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572
+ L + +FN + + + + + + L++ N L +
Sbjct: 330 --------IELPALPPRLERLIASFNHLAE-----VPELPQN-----LKQLHVEYNPLRE 371
Query: 573 F 573
F
Sbjct: 372 F 372
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 62/397 (15%), Positives = 122/397 (30%), Gaps = 112/397 (28%)
Query: 216 SNIALKTLNLSGN-----PIGDEGVKCLCDI-LVDNAGVERLQLSSVDLRDEGAKAIAEL 269
SN L+ + P+ E VK + + + + R+ + +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN 329
L LELNN G +SL E + SL + N +L L + +
Sbjct: 69 LDRQ--AHELELNNL-----GLSSLPELP---PHLESLVASCN---SL--TELPELPQSL 113
Query: 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
KSL + + ++ D L L L + NN + + E ++N L
Sbjct: 114 KSLLVDNNNLKALSD-----LPPLLEY-------LGVSNNQLE-----KLPE-LQNSSFL 155
Query: 390 LWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSL- 448
I++ N + +K+ D + I G N + L + + L
Sbjct: 156 KIIDVDNNSL-----KKLPDLPPS---LEFIAAGNNQLEE---------LPELQNLPFLT 198
Query: 449 --DLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADM----------LR 496
N + K L ++ ++ ++ G + E + ++
Sbjct: 199 AIYADNNSL-----KKLPDLP---LSLESIVAGNNIL-----EELPELQNLPFLTTIYAD 245
Query: 497 YNN------------TISILDLRANGLRDEGAKC--------LAQSFKVVNEALTSIDLA 536
N +++ D L + + + L ++ +
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305
Query: 537 FNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573
NEIR + + + LN++NN L +
Sbjct: 306 SNEIRS-----LCDLPPS-----LEELNVSNNKLIEL 332
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 47/220 (21%)
Query: 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGD-------EGVKCLCDILV 243
A E+ F + AF G L+ + +S N + + + L +I +
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSG----FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86
Query: 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303
+ A L ++ E +N L+ L ++N I L + +S
Sbjct: 87 EKAN----NLLYIN---------PEAFQNLPNLQYLLISNTGI-----KHLPDVHKIHSL 128
Query: 304 -IRSLHLNGNYG-GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
L + N + N+ GL L L+ N GI+ + + +
Sbjct: 129 QKVLLDIQDNINIHTIERNSFV-GLSFE--SVILWLNKN-----GIQEIHNSAFNGTQLD 180
Query: 362 AVLDIGNNSISA--KGAFHVAEYIKNCKSLLWINLYMNDI 399
+ NN++ FH + +++ I
Sbjct: 181 ELNLSDNNNLEELPNDVFH------GASGPVILDISRTRI 214
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 44/258 (17%), Positives = 78/258 (30%), Gaps = 63/258 (24%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
N + G +F + L+ L+LS ++ +++
Sbjct: 38 NPLRHLGSYSFFSFPE----LQVLDLSRC-----------------------EIQTIE-- 68
Query: 260 DEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGGALG 318
A L L L L N I SLA + ++ L +L
Sbjct: 69 ---DGAYQSLSH----LSTLILTGNPI-----QSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA--KGA 376
L K+L+EL++ N I + S L++ L LD+ +N I +
Sbjct: 117 NFP-IGHL---KTLKELNVAHNLIQSFKLPEYFSNLTN----LEHLDLSSNKIQSIYCTD 168
Query: 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA 436
V + L L +N + I + + + L N + S
Sbjct: 169 LRVLHQMPLLNLSLD--LSLNPM-----NFIQPGAFKEIRLKELALDTNQLKSVPDGI-- 219
Query: 437 RVLKDNSVITSLDLAYNP 454
+ + + L NP
Sbjct: 220 --FDRLTSLQKIWLHTNP 235
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 1e-04
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 324 KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSIS--AKGAFHVAE 381
L G ++L EL++ + ++ L G+L L I + + A AFH
Sbjct: 25 HHLPGAENLTELYIENQ----QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH--- 77
Query: 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428
L +NL N + E ++ Q ++ + L GN +H
Sbjct: 78 ---FTPRLSRLNLSFNAL-----ESLSWKTVQGLSLQELVLSGNPLH 116
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 56/210 (26%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
LN+ + + L D L + + L + +L + L LR L
Sbjct: 42 NAVLNVGESGLTT-----LPDCLPAH--ITTLVIPDNNLTS-----LPALPPE---LRTL 86
Query: 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHG 339
E++ N + TSL + + AL L +L + G
Sbjct: 87 EVSGNQL-----TSLPVLPPGLLELSIFSNPLTHLPAL-----------PSGLCKLWIFG 130
Query: 340 NSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399
N + + L L L + +N ++ + L Y N +
Sbjct: 131 NQL---------TSLPVLPPGLQELSVSDNQLA-----SLPALPSELCKL---WAYNNQL 173
Query: 400 GDEGAEKIADALKQNRTITTIDLGGNNIHS 429
+ + + + N + S
Sbjct: 174 -----TSLPMLPSG---LQELSVSDNQLAS 195
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 6e-04
Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 60/224 (26%)
Query: 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL----LKNNS 274
L L + GN L + V G++ L +S L +EL NN
Sbjct: 122 GLCKLWIFGNQ--------LTSLPVLPPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQ 172
Query: 275 I---------LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325
+ L+ L +++N + SL S + L N +L
Sbjct: 173 LTSLPMLPSGLQELSVSDNQL-----ASLPTLP---SELYKLWAYNN-----RLTSLPAL 219
Query: 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
L+EL + GN + + L +L L + N +++ +
Sbjct: 220 PS---GLKELIVSGNRL---------TSLPVLPSELKELMVSGNRLTS-----LPMLPSG 262
Query: 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
SL ++Y N + ++ ++L + TT++L GN +
Sbjct: 263 LLSL---SVYRNQL-----TRLPESLIHLSSETTVNLEGNPLSE 298
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 35/190 (18%), Positives = 59/190 (31%), Gaps = 33/190 (17%)
Query: 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENS 302
+ L LS +L A+ L N L L L++N I F +
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTN---LHSLLLSHNHLNFISSEAFVPV-------P 88
Query: 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362
+R L L+ N+ L ++L L L+ N I + +L
Sbjct: 89 NLRYLDLSSNHLHTLDEFLF----SDLQALEVLLLYNNH-----IVVVDRNAFEDMAQLQ 139
Query: 363 VLDIGNNSIS--AKGAFHVAEYIKNCKSLLWINLYMNDIG--DEGAEKIADALKQNRTIT 418
L + N IS + L+ ++L N + + A +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKL---PKLMLLDLSSNKLKKLPLTDLQKLPAWVKN---- 192
Query: 419 TIDLGGNNIH 428
+ L N +
Sbjct: 193 GLYLHNNPLE 202
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 39/200 (19%)
Query: 216 SNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSI 275
SN+ +K +SG + + L S+ L D + L +
Sbjct: 300 SNMNIKNFTVSGTRMVHMLC---PSKISP---FLHLDFSNNLLTDTVFENCGHLTE---- 349
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
L L L N + + +AE + +++ L ++ N ++ + KSL L
Sbjct: 350 LETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQN---SVSYDEKKGDCSWTKSLLSL 404
Query: 336 HLHGNSIGDEGIRALMSGLSS----------------RKGKLAVLDIGNNSISA--KGAF 377
++ N + D R L + + L L++ +N + + G F
Sbjct: 405 NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIF 464
Query: 378 HVAEYIKNCKSLLWINLYMN 397
SL I L+ N
Sbjct: 465 ------DRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 56/436 (12%), Positives = 124/436 (28%), Gaps = 101/436 (23%)
Query: 211 DGVLQSNIALKTLNLSGNPIGDEGVKCL-CDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
V + N L+ L+LS N + + C V ++ L LS
Sbjct: 62 ISVFKFNQELEYLDLSHNKL-----VKISCHPTV---NLKHLDLSFNAFDALPICKEFGN 113
Query: 270 LKNNSILRVLELNNNMIDYSGFTSLAE--------------------ALLENSTIRSLHL 309
+ L+ L L+ ++ S +A L++ SLH+
Sbjct: 114 MSQ---LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHI 170
Query: 310 NGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSS--RKGKLAVLDIG 367
+ + + EL + D +S L+ KL+ L +
Sbjct: 171 VFPTNKEF--HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427
N + + + + + ++ + ++ + + + D + +I +++
Sbjct: 229 NIETTWNSFIRILQLVWH-TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287
Query: 428 HSKGASAIARVLKDNSV---------------------ITSLDLAYNPIGADGAKALS-- 464
S I + + ++ LD + N + +
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL 347
Query: 465 ---EVLKFHGN-----------------INTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
E L N + L + + + + ++ L
Sbjct: 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK---SLLSL 404
Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR--DDGAFAIAQALKANEDVAVTS 562
++ +N L D +CL + +DL N+I+ + +
Sbjct: 405 NMSSNILTDTIFRCLPPR-------IKVLDLHSNKIKSIPKQVVKLEA---------LQE 448
Query: 563 LNLANNFLTKFGQSAL 578
LN+A+N L
Sbjct: 449 LNVASNQLKSVPDGIF 464
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 30/177 (16%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ F+ N +T + + + L+TL L N + + + + ++ +++L
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTE----LETLILQMNQL--KELSKIAEMTTQMKSLQQLD 380
Query: 253 LSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN 312
+S + + K K+ L L +++N++ + F L I+ L L+ N
Sbjct: 381 ISQNSVSYDEKKGDCSWTKS---LLSLNMSSNILTDTIFRCLP------PRIKVLDLHSN 431
Query: 313 YGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369
++ K + ++L+EL++ N ++++ G+ R L + + N
Sbjct: 432 -----KIKSIPKQVVKLEALQELNVASNQ-----LKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 41/204 (20%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIG--DEGVKCLCDILVDNAGVERLQLSSVD 257
N +++ KAF + + L+ L L+ N + G+ L L ++
Sbjct: 47 NKLSSLPSKAFHRLTK----LRLLYLNDNKLQTLPAGI---FKELK--------NLETLW 91
Query: 258 LRDEGAKAI-AELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNYGG 315
+ D +A+ + L L L+ N + SL + ++ T + L L N
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA-- 373
+L K L SL+EL L+ N ++ + G + +L L + NN +
Sbjct: 147 SLPKGVFDK-L---TSLKELRLYNNQ-----LKRVPEGAFDKLTELKTLKLDNNQLKRVP 197
Query: 374 KGAFHVAEYIKNCKSLLWINLYMN 397
+GAF + + L + L N
Sbjct: 198 EGAF------DSLEKLKMLQLQEN 215
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 100.0 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.98 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.98 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.97 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.96 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.95 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.95 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.95 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.94 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.94 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.94 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.94 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.94 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.93 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.93 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.93 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.93 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.92 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.91 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.91 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.91 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.91 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.9 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.9 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.89 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.89 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.89 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.88 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.87 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.87 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.86 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.85 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.84 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.84 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.82 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.81 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.81 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.81 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.81 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.8 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.8 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.8 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.77 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.77 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.77 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.76 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.76 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.76 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.76 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.73 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.73 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.73 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.73 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.73 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.72 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.71 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.7 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.68 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 99.66 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.65 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.64 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.64 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.63 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.63 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.62 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.6 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.59 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.56 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.55 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.53 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.52 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.49 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.48 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.48 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.48 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.48 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.47 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.45 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.44 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.43 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.42 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.41 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.29 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.28 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.28 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.25 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.24 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.24 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.22 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.22 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.22 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.2 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.2 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.2 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.2 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.2 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.19 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.18 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.18 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.17 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.16 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.13 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.11 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.08 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.07 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.02 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.96 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.91 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.89 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.87 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.86 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.86 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.84 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.78 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.74 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.57 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.54 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.41 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.21 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.18 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.18 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.01 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.98 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.88 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.82 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.8 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.31 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.14 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 81.22 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 80.52 |
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=389.14 Aligned_cols=413 Identities=26% Similarity=0.379 Sum_probs=206.2
Q ss_pred CCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH
Q 007577 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (597)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (597)
++++|+|+++.+++..+..+ +..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHH---HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhHHHH---HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 34555555555554442221 222345555555555555555555555555555555555555555544444444332
Q ss_pred hcCC-CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhh-CCCccEEEcCCCCCChHHHH
Q 007577 243 VDNA-GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE-NSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 243 ~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~ 320 (597)
.... +|++|++++|.+++.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.++..+..
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 2211 455555555555555444555555555555555555555554444444444332 33455555555555555444
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.++..+..+++|++|++++|.+++.+...+...+....++|+.|++++|.+++.+...++..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 44455555555555555555555554444444444334455555555555555544445555555555555555555555
Q ss_pred cHHHHHHHHHHh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEec
Q 007577 401 DEGAEKIADALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKL 478 (597)
Q Consensus 401 ~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L 478 (597)
+.++..+...+. .+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.++..+...+... ++|++|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 554444444433 2445555555555555555555555555555555555555555555544444444322 35555555
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCC
Q 007577 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDV 558 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 558 (597)
++|.+++.+...+...+..+++|++|++++|.+++.++..+.+.+...+++|++|++++|.+++.+...+...+..++.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~- 399 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS- 399 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC-
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC-
Confidence 5555555554455555555555555555555555555555554443323445555555555555555555544444443
Q ss_pred ceeEEEcccCccchhhHHHHHH
Q 007577 559 AVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 559 ~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
|++|+|++|.|++.+...+.+
T Consensus 400 -L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 400 -LRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp -CCEEECCSSSCCHHHHHHHHH
T ss_pred -ccEEECCCCCCCHHHHHHHHH
Confidence 555555555555555544443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=369.51 Aligned_cols=428 Identities=19% Similarity=0.260 Sum_probs=380.2
Q ss_pred HHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCC-CccEEEccCCCCC
Q 007577 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLNLSGNPIG 231 (597)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~ 231 (597)
....++..+++|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...+...+.... +|++|++++|.++
T Consensus 19 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 19 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 355667789999999999999999999999999999999999999999999988888877665444 7999999999999
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHc-CCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKN-NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
+.++..++..+..+++|++|++++|.+++.+...+...+.. .++|++|++++|.+++.+...++..+..+++|++|+++
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence 99999999999999999999999999999988888887654 46899999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHhh-cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH-cCCC
Q 007577 311 GNYGGALGANALAKGLE-GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK-NCKS 388 (597)
Q Consensus 311 ~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~ 388 (597)
+|.+++.+...+...+. ..++|++|++++|.+++.+...+...+. .+++|++|++++|.+++.+...+...+. .+++
T Consensus 179 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 99999888877777665 4669999999999999988877777765 4558999999999999988877776655 5899
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
|++|++++|.+++.+...++..+..+++|++|++++|.+++.+...++..+... ++|++|++++|.+++.+...+...+
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998887765 6999999999999999999999999
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRY-NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~ 546 (597)
..+++|++|++++|.+++.++..+...+.. +++|++|++++|.+++.+...+...+.. +++|++|++++|+|++.+..
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~~~~~ 416 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGIL 416 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHHH
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHh-CCCccEEECCCCCCCHHHHH
Confidence 999999999999999999999888887765 7899999999999999998888887764 48999999999999999999
Q ss_pred HHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHH
Q 007577 547 AIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 583 (597)
Q Consensus 547 ~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~ 583 (597)
.+.+.+.... ..|+.|++.++.+.....+.+.....
T Consensus 417 ~l~~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~l~~ 452 (461)
T 1z7x_W 417 QLVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEK 452 (461)
T ss_dssp HHHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCC-cchhheeecccccCHHHHHHHHHHhc
Confidence 9998876432 35999999999998876666555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=276.24 Aligned_cols=293 Identities=21% Similarity=0.299 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCC------hHHHHHHHHHHHcCCC
Q 007577 202 ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR------DEGAKAIAELLKNNSI 275 (597)
Q Consensus 202 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~------~~~~~~l~~~l~~~~~ 275 (597)
+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..++..+..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3333334443334444444444444444444444344333333444444444443222 1233334444444444
Q ss_pred ccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcC---------CCCCEEEccCCCCChHH
Q 007577 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGN---------KSLRELHLHGNSIGDEG 346 (597)
Q Consensus 276 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~Ls~n~i~~~~ 346 (597)
|++|+|++|.+++.+...++..+..+++|++|+|++|.++..+...++..+..+ ++|++|++++|.+++.+
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 445555444444444444444444444555555555544444444444444443 55666666666665555
Q ss_pred HHHHHHhhhcCccccceeeccCCCCChhHHHHHHH-HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 347 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 347 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
+..+...+.. +++|+.|++++|.+++.++..+.. .+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|
T Consensus 176 ~~~l~~~l~~-~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 MKEWAKTFQS-HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHHH-CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHh-CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 5544444432 235666666666666555544444 55666667777777776666666666666666667777777777
Q ss_pred CCChHHHHHHHHHhhc--CCCcCEEECcCCCCCHHHHHHHHHHH-hhCCCcCEEecCCCCCChhH--HHHHHHHH
Q 007577 426 NIHSKGASAIARVLKD--NSVITSLDLAYNPIGADGAKALSEVL-KFHGNINTLKLGWCQIGASG--AEFVADML 495 (597)
Q Consensus 426 ~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~--~~~l~~~l 495 (597)
.|++.+...++..+.. +++|++|+|++|.+++.++..+...+ ..+++|++|++++|.++..+ ...+...+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 7777666666666644 66777777777777766666666665 44577777777777766655 34454444
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=274.66 Aligned_cols=298 Identities=21% Similarity=0.290 Sum_probs=160.6
Q ss_pred cCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCC------hhhHHHHHHHHh
Q 007577 226 SGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMID------YSGFTSLAEALL 299 (597)
Q Consensus 226 s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~l~ 299 (597)
..+.+++.++..+...+..+++|++|+|++|.+++.+...++..+..+++|++|+|++|.+. ..++..+..++.
T Consensus 12 ~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~ 91 (386)
T 2ca6_A 12 KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91 (386)
T ss_dssp EESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHh
Confidence 33445555555555555555555555555555555555555555555555555555554332 224444555555
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCc--------cccceeeccCCCC
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRK--------GKLAVLDIGNNSI 371 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~--------~~L~~L~Ls~n~l 371 (597)
.+++|++|+|++|.++..+...++..+..+++|++|++++|.+++.+...+...+.... ++|++|++++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 55555555555555555555555555555555555555555555544444443332110 3555555555555
Q ss_pred ChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHH-HHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEEC
Q 007577 372 SAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450 (597)
Q Consensus 372 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 450 (597)
++.++..+...+..+++|++|++++|.+++.++..+.. .+..+++|++|+|++|.|++.+...++..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 55544445455555555555555555555555555544 55555555555555555555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHhh--CCCcCEEecCCCCCChhHHHHHHHHH-hcCCCccEEEccCCCCChHH--HHHHHHHH
Q 007577 451 AYNPIGADGAKALSEVLKF--HGNINTLKLGWCQIGASGAEFVADML-RYNNTISILDLRANGLRDEG--AKCLAQSF 523 (597)
Q Consensus 451 s~n~i~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~i~~~~--~~~l~~~l 523 (597)
++|.+++.+...+...+.. +++|++|+|++|.+++.+...+...+ ..+++|+.|++++|.+++.+ ...+...+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 5555555555555555533 55555555555555555555454444 33455555555555555544 24444443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-31 Score=291.74 Aligned_cols=390 Identities=16% Similarity=0.199 Sum_probs=298.3
Q ss_pred HHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCHHHHHHHHHHhhhCCCccEEEccCCCC
Q 007577 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (597)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (597)
..+..+...+++|++|+|++|.+++.....++..+. .+|++|++++|. ++..++ ......+++|++|+|++|.+
T Consensus 102 ~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~L~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~ 176 (592)
T 3ogk_B 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGL---LSIVTHCRKIKTLLMEESSF 176 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEEEESCEEEEHHHH---HHHHHHCTTCSEEECTTCEE
T ss_pred HHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEECcCCCCcCHHHH---HHHHhhCCCCCEEECccccc
Confidence 345566778999999999999999988777766532 249999999996 555444 44446789999999999998
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
++.+...+...+..+++|++|++++|.++......+...+..+++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 177 ~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 177 SEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-----LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp ECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-----GHHHHHHCTTCCEEEEC
T ss_pred cCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-----HHHHHhhhhHHHhhccc
Confidence 7777666666677789999999999998744455677778889999999999998753 45667778899999887
Q ss_pred CCCCC----------------------hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccC
Q 007577 311 GNYGG----------------------ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (597)
Q Consensus 311 ~n~i~----------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (597)
..... ......++..+..+++|++|++++|.+++.++..+. ..+++|+.|+++
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~----~~~~~L~~L~L~- 326 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLI----QKCPNLEVLETR- 326 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH----TTCTTCCEEEEE-
T ss_pred ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH----HhCcCCCEEecc-
Confidence 42111 011122334566788999999999998887665443 455689999999
Q ss_pred CCCChhHHHHHHHHHHcCCCCcEEEcc-----------CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 369 NSISAKGAFHVAEYIKNCKSLLWINLY-----------MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (597)
Q Consensus 369 n~l~~~~~~~l~~~l~~~~~L~~L~Ls-----------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (597)
+.+++.+ +......+++|++|+++ .+.+++.++..+.. .+++|++|++..+.+++.++..++.
T Consensus 327 ~~~~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 327 NVIGDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp GGGHHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH---HCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CccCHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh---hCccCeEEEeecCCccHHHHHHHHh
Confidence 5565543 44455778999999999 36888877665543 4789999999999999988777765
Q ss_pred HhhcCCCcCEEECc----CCCCCH----HHHHHHHHHHhhCCCcCEEecCCCC--CChhHHHHHHHHHhcCCCccEEEcc
Q 007577 438 VLKDNSVITSLDLA----YNPIGA----DGAKALSEVLKFHGNINTLKLGWCQ--IGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 438 ~l~~~~~L~~L~Ls----~n~i~~----~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
. +++|++|+++ .|.+++ .++. ..+..+++|++|++++|. +++.+...+. ..+++|+.|+++
T Consensus 401 ~---~~~L~~L~l~~~~~~n~l~~~p~~~~~~---~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~---~~~~~L~~L~L~ 471 (592)
T 3ogk_B 401 Y---LKNLCDFRLVLLDREERITDLPLDNGVR---SLLIGCKKLRRFAFYLRQGGLTDLGLSYIG---QYSPNVRWMLLG 471 (592)
T ss_dssp H---CCSCCEEEEEECSCCSCCSSCCCHHHHH---HHHHHCTTCCEEEEECCGGGCCHHHHHHHH---HSCTTCCEEEEC
T ss_pred h---CCCCcEEEEeecCCCccccCchHHHHHH---HHHHhCCCCCEEEEecCCCCccHHHHHHHH---HhCccceEeecc
Confidence 3 6899999996 667775 2443 345668999999998664 7877666554 457999999999
Q ss_pred CCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 508 ANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 508 ~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
+|.+++.++..+...+ ++|++|+|++|.+++.+...+...+ + +|+.|+|++|++++.|.+.+..
T Consensus 472 ~n~l~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~~~~~l---~--~L~~L~ls~n~it~~~~~~l~~ 535 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGC----PNLQKLEMRGCCFSERAIAAAVTKL---P--SLRYLWVQGYRASMTGQDLMQM 535 (592)
T ss_dssp SCCSSHHHHHHHHTCC----TTCCEEEEESCCCBHHHHHHHHHHC---S--SCCEEEEESCBCCTTCTTGGGG
T ss_pred CCCCCHHHHHHHHhcC----cccCeeeccCCCCcHHHHHHHHHhc---C--ccCeeECcCCcCCHHHHHHHHH
Confidence 9999998877765543 6799999999999988877775532 3 4999999999999998877754
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-30 Score=282.90 Aligned_cols=384 Identities=16% Similarity=0.186 Sum_probs=282.2
Q ss_pred HHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccC-CCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 153 TLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAAN-GITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 153 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
.+..+...+++|++|+|++|.+++..+..++.. +++|++|++++| .+++.++..+ ...+++|++|++++|.++
T Consensus 96 ~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 96 WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVD 169 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEE
T ss_pred HHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccC
Confidence 455666788999999999999998876666533 689999999999 6776554443 456788999999998877
Q ss_pred hhHHHHHHHHHhcCCCcCEEEecCCC--CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEc
Q 007577 232 DEGVKCLCDILVDNAGVERLQLSSVD--LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (597)
Q Consensus 232 ~~~~~~l~~~l~~~~~L~~L~Ls~~~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 309 (597)
+.+...+......+++|++|++++|. ++... +......+++|++|++++|.- +..++..+..+++|++|++
T Consensus 170 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~----~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVP----LEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSC----HHHHHHHHHHCTTCSEEEC
T ss_pred CcchHHHHHHhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCc----HHHHHHHHhcCCcceEccc
Confidence 66555555554567889999999886 55543 444455578899999988832 1335666667788888876
Q ss_pred CCCC--CChHHHHHH------------------------HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccce
Q 007577 310 NGNY--GGALGANAL------------------------AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAV 363 (597)
Q Consensus 310 ~~n~--i~~~~~~~l------------------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 363 (597)
+.+. +.......+ ...+..+++|++|++++|.+++.++..+. ..+++|+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~----~~~~~L~~ 318 (594)
T 2p1m_B 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL----CQCPKLQR 318 (594)
T ss_dssp SBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH----TTCTTCCE
T ss_pred ccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH----hcCCCcCE
Confidence 6553 222222222 22223567889999999998877655543 35568999
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEc---------cCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINL---------YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA 434 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 434 (597)
|++++| +++.+ +......+++|++|++ ..+.+++.++..+.. .+++|++|.+..+.+++.+...
T Consensus 319 L~l~~~-~~~~~---l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~---~~~~L~~L~~~~~~l~~~~~~~ 391 (594)
T 2p1m_B 319 LWVLDY-IEDAG---LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM---GCPKLESVLYFCRQMTNAALIT 391 (594)
T ss_dssp EEEEGG-GHHHH---HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH---HCTTCCEEEEEESCCCHHHHHH
T ss_pred EeCcCc-cCHHH---HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH---hchhHHHHHHhcCCcCHHHHHH
Confidence 999988 55543 3344456899999998 345888887766554 3689999999999999988776
Q ss_pred HHHHhhcCCCcCEEECc--C----CCCC----HHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEE
Q 007577 435 IARVLKDNSVITSLDLA--Y----NPIG----ADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504 (597)
Q Consensus 435 l~~~l~~~~~L~~L~Ls--~----n~i~----~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 504 (597)
+... +++|++|+++ + +.++ +.++.. .+..+++|++|++++ .+++.+...+.. .+++|+.|
T Consensus 392 l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~---l~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L 461 (594)
T 2p1m_B 392 IARN---RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA---IVEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEML 461 (594)
T ss_dssp HHHH---CTTCCEEEEEESSTTCCCTTTCCCTHHHHHH---HHHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEE
T ss_pred HHhh---CCCcceeEeecccCCCcccccCCchhhHHHH---HHhhCCCccEEeecC-cccHHHHHHHHH---hchhccEe
Confidence 6543 6899999999 4 5677 555444 356688999999988 888887766655 36899999
Q ss_pred EccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHH
Q 007577 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALT 579 (597)
Q Consensus 505 ~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~ 579 (597)
++++|.+++.++..+...+ ++|++|+|++|.+++.+...+...+ .+|+.|++++|.++..+.+.+.
T Consensus 462 ~L~~~~i~~~~~~~l~~~~----~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~ 527 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGC----DSLRKLEIRDCPFGDKALLANASKL-----ETMRSLWMSSCSVSFGACKLLG 527 (594)
T ss_dssp EEESCCSSHHHHHHHHHHC----TTCCEEEEESCSCCHHHHHHTGGGG-----GGSSEEEEESSCCBHHHHHHHH
T ss_pred eccCCCCcHHHHHHHHhcC----CCcCEEECcCCCCcHHHHHHHHHhC-----CCCCEEeeeCCCCCHHHHHHHH
Confidence 9999999999988886654 6799999999999988877665432 2499999999999888887764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=264.80 Aligned_cols=277 Identities=16% Similarity=0.215 Sum_probs=128.9
Q ss_pred CCccEEEccCCCCChhHHHHHHHHHhcCC-CcCEEEecCCCCChHHHHHHHHHHHcC-CCccEEEeccCCCChhhHHHHH
Q 007577 218 IALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLA 295 (597)
Q Consensus 218 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~ 295 (597)
++|++|++++|.+++.+...++..+..++ +|++|++++|.+++.+...+...+... ++|++|++++|.+++.+...+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 33555555555555554444444444444 455555555555554444444444443 4455555555555444444444
Q ss_pred HHHhhC-CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChh
Q 007577 296 EALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAK 374 (597)
Q Consensus 296 ~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 374 (597)
..+..+ ++|++|++++|.++..+...+...+..+ ..+|++|++++|.+++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~----------------------------~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL----------------------------PASITSLNLRGNDLGIK 153 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS----------------------------CTTCCEEECTTSCGGGS
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC----------------------------CCceeEEEccCCcCCHH
Confidence 444443 4444444444444444444443333331 12344444444444444
Q ss_pred HHHHHHHHHHcCC-CCcEEEccCCCCCcHHHHHHHHHHhcC-CCccEEEccCCCCChHHHHHHHHHhhc-CCCcCEEECc
Q 007577 375 GAFHVAEYIKNCK-SLLWINLYMNDIGDEGAEKIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKD-NSVITSLDLA 451 (597)
Q Consensus 375 ~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls 451 (597)
+...++..+..++ +|++|+|++|.+++.+...+...+..+ ++|++|+|++|.|++.+...++..+.. +++|++|+|+
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 3334444444433 444444444444444444444444444 244444444444444444444444443 2345555555
Q ss_pred CCCCCHHHHHHHHHHHhhCCCcCEEecCCCC---CChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 452 YNPIGADGAKALSEVLKFHGNINTLKLGWCQ---IGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 452 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
+|.+++.++..+...+..+++|++|++++|. ++..+...+...+..+++|+.||+++|.+.+.....+...
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~ 307 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNL 307 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHH
Confidence 5555444444444444444455555555554 3333344444444445555555555555555444444433
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=263.14 Aligned_cols=299 Identities=21% Similarity=0.274 Sum_probs=243.9
Q ss_pred EEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC-CccEEEcCCCCCChHHHHHHHHHhhcC
Q 007577 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGALGANALAKGLEGN 329 (597)
Q Consensus 251 L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~ 329 (597)
+++++|.++.. ++..+...++|++|++++|.+++.+...+..++..++ +|++|++++|.++..+...+...+...
T Consensus 3 ~~ls~n~~~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNP----VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCH----HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred cccccccchHH----HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence 45666776654 4455555556777777777777777777777777777 777888877777777666666666665
Q ss_pred -CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC-CCCcEEEccCCCCCcHHHHHH
Q 007577 330 -KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC-KSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 330 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l 407 (597)
++|++|++++|.+++.+...+...+....++|+.|++++|.+++.+...+...+..+ ++|++|+|++|.+++.+...+
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 788888888888887777777666654435889999999988887777777777774 699999999999999999999
Q ss_pred HHHHhcCC-CccEEEccCCCCChHHHHHHHHHhhcCC-CcCEEECcCCCCCHHHHHHHHHHHhh-CCCcCEEecCCCCCC
Q 007577 408 ADALKQNR-TITTIDLGGNNIHSKGASAIARVLKDNS-VITSLDLAYNPIGADGAKALSEVLKF-HGNINTLKLGWCQIG 484 (597)
Q Consensus 408 ~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~ 484 (597)
+..+...+ +|++|+|++|+|++.+...++..+..++ +|++|+|++|.|++.+...+...+.. +++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 99988876 9999999999999999999999999885 99999999999999999989888877 459999999999999
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCC---CChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHh
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANG---LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKA 554 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~---i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 554 (597)
+.+...+...+..+++|++|++++|. +++.+...+...+.. .++|+.||+++|.+.+..+..+.+.++.
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~-l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN-IQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTT-CCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhcc-CCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 99998888888899999999999997 777777777766653 3779999999999998877777766553
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=271.66 Aligned_cols=389 Identities=15% Similarity=0.178 Sum_probs=289.8
Q ss_pred HHHHhcCCCcEEEcCCCCC-----------CHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEE
Q 007577 156 EFAKELRAFSSVDMSGRNF-----------GDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLN 224 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l-----------~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~ 224 (597)
.++..+++|++|+++++.. +......+......+++|++|+|++|.+++..+..+...+. .+|++|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~--~~L~~L~ 144 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA--DDLETLK 144 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG--GGCCEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc--ccCcEEE
Confidence 5677899999999987531 11111223444456899999999999999888777765432 2499999
Q ss_pred ccCCC-CChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCC
Q 007577 225 LSGNP-IGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST 303 (597)
Q Consensus 225 Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 303 (597)
+++|. +++.++ ......+++|++|+|++|.+++.+...+......+++|++|++++|.++......+...+..+++
T Consensus 145 L~~~~~~~~~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 145 LDKCSGFTTDGL---LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EESCEEEEHHHH---HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred CcCCCCcCHHHH---HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 99986 444443 34444689999999999998776655677777788999999999999875455666777778999
Q ss_pred ccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC-------------------------hHHHHHHHHhhhcCc
Q 007577 304 IRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG-------------------------DEGIRALMSGLSSRK 358 (597)
Q Consensus 304 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~-------------------------~~~~~~l~~~l~~~~ 358 (597)
|++|++++|.+... +..+..+++|++|+++..... ...+. .+...+
T Consensus 222 L~~L~L~~~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~----~~~~~~ 292 (592)
T 3ogk_B 222 LVSVKVGDFEILEL-----VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP----ILFPFA 292 (592)
T ss_dssp CCEEECSSCBGGGG-----HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGG----GGGGGG
T ss_pred CcEEeccCccHHHH-----HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHH----HHHhhc
Confidence 99999999987653 244667888888888642111 11111 122345
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEcc-----------CCCC
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG-----------GNNI 427 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l 427 (597)
++|++|++++|.+++.+ +...+..+++|++|+++ +.+++.++..+. ..+++|++|+++ .+.+
T Consensus 293 ~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~---~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 293 AQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVIGDRGLEVLA---QYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGGHHHHHHHHH---HHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred CCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-CccCHHHHHHHH---HhCCCCCEEEeecCccccccccccCcc
Confidence 68999999999988764 33457889999999999 667776655554 357899999999 3689
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC----CCCCChhHH-HHHHHHHhcCCCcc
Q 007577 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG----WCQIGASGA-EFVADMLRYNNTIS 502 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~----~n~i~~~~~-~~l~~~l~~~~~L~ 502 (597)
++.++..+.. .|++|++|+++.|.+++.++..+.. .+++|++|+++ .+.+++... ..+...+..+++|+
T Consensus 366 ~~~~~~~l~~---~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 366 SQRGLIALAQ---GCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp CHHHHHHHHH---HCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred CHHHHHHHHh---hCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 9887766644 4799999999999999987776654 46899999996 556776311 12344466789999
Q ss_pred EEEccCC--CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 503 ILDLRAN--GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 503 ~L~l~~n--~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
.|++++| .+++.++..+...+ ++|++|++++|.+++.+...+.. .++ +|++|+|++|.|++.+...+..
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~---~~~--~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYS----PNVRWMLLGYVGESDEGLMEFSR---GCP--NLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSC----TTCCEEEECSCCSSHHHHHHHHT---CCT--TCCEEEEESCCCBHHHHHHHHH
T ss_pred EEEEecCCCCccHHHHHHHHHhC----ccceEeeccCCCCCHHHHHHHHh---cCc--ccCeeeccCCCCcHHHHHHHHH
Confidence 9999865 48998888877643 67999999999999887766643 333 4999999999998877766543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=262.37 Aligned_cols=372 Identities=16% Similarity=0.199 Sum_probs=266.0
Q ss_pred HHHHHHhcCCCcEEEcCCC-CCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC--C
Q 007577 154 LNEFAKELRAFSSVDMSGR-NFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP--I 230 (597)
Q Consensus 154 l~~~~~~~~~L~~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l 230 (597)
+..+.+.+++|++|+|++| .+++.++..+ +..+++|++|++++|.+++.+...+......+++|++|++++|. +
T Consensus 122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 198 (594)
T 2p1m_B 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAI---AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEV 198 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCEEEEHHHHHHH---HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCC
T ss_pred HHHHHHhCCCCcEEeCCCcCCCCHHHHHHH---HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcC
Confidence 3444456788888888888 6666654433 34578888888888877665555555555567788888888875 5
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC--CChhhHHHHHH------------
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM--IDYSGFTSLAE------------ 296 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~------------ 296 (597)
+...+ ......+++|++|++++|.- . ..+...+..+++|++|+++.+. +....+..+..
T Consensus 199 ~~~~l---~~l~~~~~~L~~L~L~~~~~-~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls 271 (594)
T 2p1m_B 199 SFSAL---ERLVTRCPNLKSLKLNRAVP-L---EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271 (594)
T ss_dssp CHHHH---HHHHHHCTTCCEEECCTTSC-H---HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred CHHHH---HHHHHhCCCCcEEecCCCCc-H---HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc
Confidence 44443 33334478888888887731 1 1255666667777777765542 22222222222
Q ss_pred ------------HHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcccccee
Q 007577 297 ------------ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364 (597)
Q Consensus 297 ------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 364 (597)
.+..+++|++|++++|.+++.. +...+..+++|++|++++| +++.++..+... +++|+.|
T Consensus 272 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~----~~~L~~L 343 (594)
T 2p1m_B 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST----CKDLREL 343 (594)
T ss_dssp CCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH----CTTCCEE
T ss_pred CCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh----CCCCCEE
Confidence 2224678999999999987654 3345678999999999998 777666666543 4589999
Q ss_pred ec---------cCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEcc--C----CCCC-
Q 007577 365 DI---------GNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLG--G----NNIH- 428 (597)
Q Consensus 365 ~L---------s~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~----n~l~- 428 (597)
++ ..+.+++.+...+ ...+++|++|++..|.+++.++..+.. .+++|++|+++ + +.++
T Consensus 344 ~L~~~~~~g~~~~~~l~~~~l~~l---~~~~~~L~~L~~~~~~l~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 344 RVFPSEPFVMEPNVALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIAR---NRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEECSCTTCSSCSSCCCHHHHHHH---HHHCTTCCEEEEEESCCCHHHHHHHHH---HCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEecCcccccccCCCCCHHHHHHH---HHhchhHHHHHHhcCCcCHHHHHHHHh---hCCCcceeEeecccCCCcccccC
Confidence 98 3457887654433 356899999999999999987666554 36899999999 4 5777
Q ss_pred ---hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEE
Q 007577 429 ---SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 429 ---~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
+.++..+ +..|++|++|++++ .+++.++..+.. .+++|++|++++|.+++.+...+. ..+++|++|+
T Consensus 418 ~~~~~~~~~l---~~~~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~ 487 (594)
T 2p1m_B 418 EPLDIGFGAI---VEHCKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVL---SGCDSLRKLE 487 (594)
T ss_dssp CCTHHHHHHH---HHHCTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHH---HHCTTCCEEE
T ss_pred CchhhHHHHH---HhhCCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHH---hcCCCcCEEE
Confidence 5555544 55689999999988 789888777665 468999999999999988776654 3479999999
Q ss_pred ccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccC
Q 007577 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (597)
Q Consensus 506 l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 568 (597)
+++|.+++.++..+...+ ++|+.|++++|.+++.+...+...+ + .++...+..+
T Consensus 488 L~~n~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~l~~~l---p--~l~i~~~~~~ 541 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKL----ETMRSLWMSSCSVSFGACKLLGQKM---P--KLNVEVIDER 541 (594)
T ss_dssp EESCSCCHHHHHHTGGGG----GGSSEEEEESSCCBHHHHHHHHHHC---T--TEEEEEECSS
T ss_pred CcCCCCcHHHHHHHHHhC----CCCCEEeeeCCCCCHHHHHHHHHhC---C--CCEEEEecCC
Confidence 999999988877665543 6799999999999998888875442 2 2555555544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-28 Score=249.03 Aligned_cols=305 Identities=22% Similarity=0.236 Sum_probs=168.2
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++|+++++.+.+. ..+..+++|++|++++|.+++... +..+++|++|++++|.+++.
T Consensus 42 ~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------
T ss_pred hcccccEEEEeCCccccc------hhhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------
Confidence 567788888888877653 235667788888888887765321 55667777787777777653
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+..+++|++|++++|.+++... +..+++|++|++++|..... ...+..+++|++|++++|.+.....
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSD-----LSPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCC-----CGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred hHHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCccc-----ccchhhCCCCcEEEecCCCcCCchh
Confidence 124556777777777777765321 44567777777777733211 1124456666666666666554432
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
+..+++|++|++++|.+.+... ...+++|+.|++++|.++.. .. +..+++|++|++++|.+
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAYVNQITDI-----TP-VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCCGG-------GGGCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred ------hccCCCCCEEEccCCccccccc-------ccCCCccceeecccCCCCCC-----ch-hhcCCcCCEEEccCCcc
Confidence 4456666666666666554211 12334566666666665552 11 45556666666666655
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++.. . +..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 234 ~~~~-----~-~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 TDLS-----P-LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLN 295 (347)
T ss_dssp CCCG-----G-GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred CCCc-----c-hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECc
Confidence 5421 1 44455666666666655542 1234445555555555555442 123444555555555
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
+|.+++..+..+ ..+++|++|++++|.+++... +... ++|++|++++|.|+
T Consensus 296 ~n~l~~~~~~~l----~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 296 NNQLGNEDMEVI----GGLTNLTTLFLSQNHITDIRP--LASL-----SKMDSADFANQVIK 346 (347)
T ss_dssp SSCCCGGGHHHH----HTCTTCSEEECCSSSCCCCGG--GGGC-----TTCSEESSSCC---
T ss_pred CCcCCCcChhHh----hccccCCEEEccCCccccccC--hhhh-----hccceeehhhhccc
Confidence 555554433322 233555555555555554322 1111 44555555555543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-28 Score=247.83 Aligned_cols=305 Identities=23% Similarity=0.256 Sum_probs=242.5
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|++|++++|.++... .+..+++|++|++++|.+++... +..+++|++|++++|.+++. .
T Consensus 43 l~~L~~L~l~~~~i~~~~------~~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~------~ 104 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ------GIEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDI------S 104 (347)
T ss_dssp HTTCSEEECCSSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCC------G
T ss_pred cccccEEEEeCCccccch------hhhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCc------h
Confidence 489999999999987531 25678999999999999987532 56789999999999999874 2
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.+++... +..+++|++|++++|...... ..+..+++|++|++++|.+.+...
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~- 172 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP- 172 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh-
Confidence 36678999999999999875321 667899999999999533221 226789999999999999876432
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
...+++|+.|++++|.+... +. +..+++|+.|++++|.+++... +..+++|++|++++|.++
T Consensus 173 ------~~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 173 ------IANLTDLYSLSLNYNQIEDI-----SP-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ------GGGCTTCSEEECTTSCCCCC-----GG-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC
T ss_pred ------hccCCCCCEEEccCCccccc-----cc-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccC
Confidence 13556899999999999873 22 7789999999999999887421 667899999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 508 (597)
.... +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++
T Consensus 235 ~~~~------~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 235 DLSP------LANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCGG------GTTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCS
T ss_pred CCcc------hhcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcC
Confidence 7532 67789999999999998864 3456789999999999999875 2356789999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
|.+++..+..+..+ ++|++|++++|.+++..+ +.. . .+|++|++++|.|+.
T Consensus 297 n~l~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~--~~~----l--~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 297 NQLGNEDMEVIGGL-----TNLTTLFLSQNHITDIRP--LAS----L--SKMDSADFANQVIKK 347 (347)
T ss_dssp SCCCGGGHHHHHTC-----TTCSEEECCSSSCCCCGG--GGG----C--TTCSEESSSCC----
T ss_pred CcCCCcChhHhhcc-----ccCCEEEccCCccccccC--hhh----h--hccceeehhhhcccC
Confidence 99998887777665 789999999999987544 322 2 349999999999863
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=256.52 Aligned_cols=328 Identities=21% Similarity=0.224 Sum_probs=254.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+.+.. . +..+++|++|++++|.++.... +..+++|++|++++|.+++...
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~-- 129 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITDIDP-- 129 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG--
T ss_pred hhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCCChH--
Confidence 346888999999999887642 2 6778999999999998875421 5678899999999998877531
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
+..+++|++|++++|.+++.. .+..+++|++|++++ .+.+. ..+..+++|++|++++|.++..
T Consensus 130 ----~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~------~~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDL------KPLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ----GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCC------GGGTTCTTCCEEECCSSCCCCC
T ss_pred ----HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCc------hhhccCCCCCEEECcCCcCCCC
Confidence 566899999999999887632 256678999999974 34321 1266789999999999998765
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
. .+..+++|++|++++|.+.+... ...+++|+.|++++|.++.. ..+..+++|++|++++|
T Consensus 193 ~------~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 193 S------VLAKLTNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANN 253 (466)
T ss_dssp G------GGGGCTTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred h------hhccCCCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCC
Confidence 3 36788999999999998876422 13456899999999998873 34678899999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEe
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 477 (597)
.+++.. .+..+++|++|++++|.++.... +..+++|++|++++|.+++... +..+++|++|+
T Consensus 254 ~l~~~~------~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~ 315 (466)
T 1o6v_A 254 QISNLA------PLSGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------ISNLKNLTYLT 315 (466)
T ss_dssp CCCCCG------GGTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GGGCTTCSEEE
T ss_pred ccccch------hhhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hcCCCCCCEEE
Confidence 988742 16678999999999999987432 6677999999999999876432 56789999999
Q ss_pred cCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCC
Q 007577 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED 557 (597)
Q Consensus 478 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 557 (597)
+++|.+++..+ +..+++|+.|++++|.+++. ..+..+ ++|+.|++++|++++..+ +.. .
T Consensus 316 L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~l~~n~l~~~~~--~~~----l-- 374 (466)
T 1o6v_A 316 LYFNNISDISP------VSSLTKLQRLFFYNNKVSDV--SSLANL-----TNINWLSAGHNQISDLTP--LAN----L-- 374 (466)
T ss_dssp CCSSCCSCCGG------GGGCTTCCEEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCBCGG--GTT----C--
T ss_pred CcCCcCCCchh------hccCccCCEeECCCCccCCc--hhhccC-----CCCCEEeCCCCccCccch--hhc----C--
Confidence 99999887643 46789999999999998875 223322 789999999999987654 322 2
Q ss_pred CceeEEEcccCccchhh
Q 007577 558 VAVTSLNLANNFLTKFG 574 (597)
Q Consensus 558 ~~L~~L~L~~N~i~~~~ 574 (597)
.+|+.|++++|.++...
T Consensus 375 ~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 375 TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp TTCCEEECCCEEEECCC
T ss_pred CCCCEEeccCCcccCCc
Confidence 34999999999988743
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-31 Score=289.29 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=40.5
Q ss_pred hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHH
Q 007577 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l 548 (597)
.+++|++|++++|.++...+.. +..+++|++|++++|.+++..+..+... +.| .|++++|+++...+..+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSHNRLTSSSIEALSHL-----KGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCGGGGGGGTTC-----CSC-EEECCSSCCCCCCGGGH
T ss_pred cCCCccEEECCCCccCccChhh----hccccCCCEEECCCCccCcCChhHhCcc-----ccc-EEECcCCcccccCHhhc
Confidence 3445555555555554432221 2334555555555555555443333322 444 55555555554433333
Q ss_pred HHHHHhCCCCceeEEEcccCccc
Q 007577 549 AQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 549 ~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
...- +|+.|++++|+++
T Consensus 544 ~~l~------~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 544 PILS------QQRTINLRQNPLD 560 (606)
T ss_dssp HHHH------TSSEEECTTCCEE
T ss_pred ccCC------CCCEEeCCCCCcc
Confidence 3331 2555555555554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-32 Score=303.02 Aligned_cols=259 Identities=23% Similarity=0.271 Sum_probs=170.5
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|++|++++|.+++ .++..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+.. +..
T Consensus 394 ~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~----p~~ 461 (768)
T 3rgz_A 394 NTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEI----PQE 461 (768)
T ss_dssp CCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCC----CGG
T ss_pred CCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcC----CHH
Confidence 456666666665542 234455667777778877776653222 34567777888888887776431 111
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.++..
T Consensus 462 ~-~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~--- 529 (768)
T 3rgz_A 462 L-MYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN--- 529 (768)
T ss_dssp G-GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE---
T ss_pred H-cCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc---
Confidence 2 2445788888888887752 556677788888888888877754 455566778888888888877643
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH------------------------------------------------
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSE------------------------------------------------ 465 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------------------------------------------------ 465 (597)
++..+..+++|++|++++|.++..-...+..
T Consensus 530 -~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 530 -IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp -CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred -CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 3344666788888888888654211111100
Q ss_pred ------------------HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcC
Q 007577 466 ------------------VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVN 527 (597)
Q Consensus 466 ------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n 527 (597)
.+..+++|+.|++++|+++...+. .+..+++|+.|++++|.++...+..+..+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L----- 679 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK----EIGSMPYLFILNLGHNDISGSIPDEVGDL----- 679 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGC-----
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCH----HHhccccCCEEeCcCCccCCCCChHHhCC-----
Confidence 112246788888888887755333 34556888888888888886655555554
Q ss_pred ccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 528 EALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 528 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
++|+.|||++|+++...+..+... ..|+.|+|++|+++.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSAL------TMLTEIDLSNNNLSG 718 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGC------CCCSEEECCSSEEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCC------CCCCEEECcCCcccc
Confidence 678888888888887666666544 348888888888764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-31 Score=302.59 Aligned_cols=373 Identities=21% Similarity=0.193 Sum_probs=233.1
Q ss_pred HHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhh-CCCccEEEccCCCCChh
Q 007577 155 NEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPIGDE 233 (597)
Q Consensus 155 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~ 233 (597)
...+..+++|++|++++|.+... ++. ..+++|++|++++|.++.. ++..+.. +++|++|++++|.+...
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~----~~~--~~l~~L~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGP----IPP--LPLKSLQYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEES----CCC--CCCTTCCEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred cHHHhcCCCCCEEECCCCcccCc----cCc--cccCCCCEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCCc
Confidence 34566789999999999987532 111 1456777777777755421 1111112 35566666666655432
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHH-HHHHcCCCccEEEeccCCCChhhHHHHH-----------------
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLKNNSILRVLELNNNMIDYSGFTSLA----------------- 295 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~----------------- 295 (597)
++..+..+++|++|++++|.++.. ++ ..+..+++|++|++++|.+++.....+.
T Consensus 310 ----~p~~~~~l~~L~~L~L~~n~l~~~----ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 310 ----VPPFFGSCSLLESLALSSNNFSGE----LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp ----CCGGGGGCTTCCEEECCSSEEEEE----CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred ----cchHHhcCCCccEEECCCCcccCc----CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 223344456666666666655421 11 1233445566666655554321111111
Q ss_pred ----HHHhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC
Q 007577 296 ----EALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN 369 (597)
Q Consensus 296 ----~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n 369 (597)
..+.. +++|++|++++|.++.. ++..+..+++|++|++++|.+++... ..+ ..+++|+.|++++|
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l-~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIP----SSL-GSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCC----GGG-GGCTTCCEEECCSS
T ss_pred CCcChhhhhcccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCccc----HHH-hcCCCCCEEECCCC
Confidence 11111 44566666666655432 22446677888888888887654311 112 34457888888888
Q ss_pred CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEE
Q 007577 370 SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLD 449 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 449 (597)
.++.. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++.. ++..+..+++|++|+
T Consensus 453 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 453 MLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILK 520 (768)
T ss_dssp CCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEE
T ss_pred cccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEE
Confidence 88763 566677888888888888888754 455677788888888888888754 344466678899999
Q ss_pred CcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHH------------------------------------
Q 007577 450 LAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD------------------------------------ 493 (597)
Q Consensus 450 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~------------------------------------ 493 (597)
|++|.++.. +...+..+++|++|++++|.++..-+..+..
T Consensus 521 L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (768)
T 3rgz_A 521 LSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596 (768)
T ss_dssp CCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEEC
T ss_pred CCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccc
Confidence 998887643 2344566788999999988765322221111
Q ss_pred ------------------------------HHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 494 ------------------------------MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 494 ------------------------------~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
.+..+++|+.||+++|.++...+..+..+ +.|+.|+|++|.++..
T Consensus 597 ~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-----PYLFILNLGHNDISGS 671 (768)
T ss_dssp TTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-----TTCCEEECCSSCCCSC
T ss_pred ccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-----ccCCEEeCcCCccCCC
Confidence 12234678899999998887655555554 7799999999999877
Q ss_pred HHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 544 GAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 544 ~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
.+..+... .+|+.|||++|+++......+..+
T Consensus 672 ip~~l~~L------~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 672 IPDEVGDL------RGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCGGGGGC------TTCCEEECCSSCCEECCCGGGGGC
T ss_pred CChHHhCC------CCCCEEECCCCcccCcCChHHhCC
Confidence 77777655 349999999999987666655443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=253.80 Aligned_cols=327 Identities=21% Similarity=0.233 Sum_probs=261.3
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++|+++++.+... . .+..+++|++|++++|.++... . +..+++|++|++++|.+.....
T Consensus 44 ~l~~l~~L~l~~~~i~~l-----~-~~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~---- 107 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-----D-GVEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP---- 107 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG----
T ss_pred HhccccEEecCCCCCccC-----c-chhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh----
Confidence 357899999999988753 2 3677899999999999988642 1 6788999999999999987532
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
+..+++|++|++++|.+++... +..+++|++|++++|.+++.. .+..+++|++|++++ .+....
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~-~~~~~~- 171 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP------LKNLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGN-QVTDLK- 171 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG------GTTCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEE-SCCCCG-
T ss_pred --hcCCCCCCEEECCCCCCCCChH------HcCCCCCCEEECCCCccCCCh------hhccCCcccEeecCC-cccCch-
Confidence 6678999999999999987521 677899999999999887532 367899999999974 343322
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
.+..+++|++|++++|.+++.. .+ ..+++|+.|++++|.++.. .. +..+++|++|++++|.+
T Consensus 172 -----~~~~l~~L~~L~l~~n~l~~~~------~l-~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 172 -----PLANLTTLERLDISSNKVSDIS------VL-AKLTNLESLIATNNQISDI-----TP-LGILTNLDELSLNGNQL 233 (466)
T ss_dssp -----GGTTCTTCCEEECCSSCCCCCG------GG-GGCTTCSEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCC
T ss_pred -----hhccCCCCCEEECcCCcCCCCh------hh-ccCCCCCEEEecCCccccc-----cc-ccccCCCCEEECCCCCc
Confidence 2678999999999999987642 12 3556999999999999873 12 67799999999999999
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++. ..+..+++|++|++++|.++.... +..+++|++|++++|.++.... +..+++|++|+++
T Consensus 234 ~~~------~~l~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 234 KDI------GTLASLTNLTDLDLANNQISNLAP------LSGLTKLTELKLGANQISNISP------LAGLTALTNLELN 295 (466)
T ss_dssp CCC------GGGGGCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECC
T ss_pred ccc------hhhhcCCCCCEEECCCCccccchh------hhcCCCCCEEECCCCccCcccc------ccCCCccCeEEcC
Confidence 874 246678999999999999987432 6778999999999999886432 5678999999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCc
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~ 559 (597)
+|.+++..+ +..+++|+.|++++|.+++... +.. .++|++|++++|.+++. ..+ ... .+
T Consensus 296 ~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~--~~l----~~l--~~ 354 (466)
T 1o6v_A 296 ENQLEDISP------ISNLKNLTYLTLYFNNISDISP--VSS-----LTKLQRLFFYNNKVSDV--SSL----ANL--TN 354 (466)
T ss_dssp SSCCSCCGG------GGGCTTCSEEECCSSCCSCCGG--GGG-----CTTCCEEECCSSCCCCC--GGG----TTC--TT
T ss_pred CCcccCchh------hcCCCCCCEEECcCCcCCCchh--hcc-----CccCCEeECCCCccCCc--hhh----ccC--CC
Confidence 999987543 5678999999999999988644 222 27899999999999875 223 223 35
Q ss_pred eeEEEcccCccchhhH
Q 007577 560 VTSLNLANNFLTKFGQ 575 (597)
Q Consensus 560 L~~L~L~~N~i~~~~~ 575 (597)
|+.|++++|.+++...
T Consensus 355 L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP 370 (466)
T ss_dssp CCEEECCSSCCCBCGG
T ss_pred CCEEeCCCCccCccch
Confidence 9999999999987654
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-29 Score=268.67 Aligned_cols=367 Identities=15% Similarity=0.133 Sum_probs=206.6
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|++++|.+... .+..+..+++|++|++++|+++.. +.. .+++|++|++++|.++...
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~--~l~~L~~L~L~~N~l~~~~-- 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYL----DISVFKFNQELEYLDLSHNKLVKI-----SCH--PTVNLKHLDLSFNAFDALP-- 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEE----EGGGGTTCTTCCEEECCSSCCCEE-----ECC--CCCCCSEEECCSSCCSSCC--
T ss_pred hccccccccEEecCCCccCCc----ChHHhhcccCCCEEecCCCceeec-----Ccc--ccCCccEEeccCCcccccc--
Confidence 445667777777777777643 134556677777777777776632 111 4567777777777765421
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCc--cEEEeccCCC--ChhhHHHHHH----------------
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL--RVLELNNNMI--DYSGFTSLAE---------------- 296 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L--~~L~Ls~n~i--~~~~~~~l~~---------------- 296 (597)
++..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ +......+..
T Consensus 107 -~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 107 -ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp -CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred -chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 223444567777777777777652 12333555 7777777766 2111111100
Q ss_pred ------HHhhCCCccEEEcCCCCC--ChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccC
Q 007577 297 ------ALLENSTIRSLHLNGNYG--GALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGN 368 (597)
Q Consensus 297 ------~l~~~~~L~~L~L~~n~i--~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 368 (597)
.+..+++|+.|++++|.. ...........+..+++|+.|++++|.+++..+..+..... .++|+.|++++
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~ 256 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH--TSSCSEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhh--hCcccEEEeec
Confidence 001123333333333320 00001111123455555555655555555544444333221 11344444444
Q ss_pred CCCChh----------------------------HHHHHHHH---------------------HHcCCCCcEEEccCCCC
Q 007577 369 NSISAK----------------------------GAFHVAEY---------------------IKNCKSLLWINLYMNDI 399 (597)
Q Consensus 369 n~l~~~----------------------------~~~~l~~~---------------------l~~~~~L~~L~Ls~n~l 399 (597)
|.++.. ....+... ...+++|++|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 332210 00011111 14677888888888888
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
++. ++..+..+++|++|++++|+++.. ..++..+..+++|++|++++|.++..... ..+..+++|++|+++
T Consensus 337 ~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 337 TDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMS 407 (520)
T ss_dssp CTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECC
T ss_pred Chh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECc
Confidence 764 344556778888888888888863 23455567778888888888887652111 123445788888888
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCc
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~ 559 (597)
+|.+++..+..+ .++|+.|++++|.|+... ..+... ++|++|++++|+++......+.. . .+
T Consensus 408 ~N~l~~~~~~~l------~~~L~~L~Ls~N~l~~ip-~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~----l--~~ 469 (520)
T 2z7x_B 408 SNILTDTIFRCL------PPRIKVLDLHSNKIKSIP-KQVVKL-----EALQELNVASNQLKSVPDGIFDR----L--TS 469 (520)
T ss_dssp SSCCCGGGGGSC------CTTCCEEECCSSCCCCCC-GGGGGC-----TTCCEEECCSSCCCCCCTTTTTT----C--TT
T ss_pred CCCCCcchhhhh------cccCCEEECCCCcccccc-hhhhcC-----CCCCEEECCCCcCCccCHHHhcc----C--Cc
Confidence 888875433222 168999999999888432 222222 77999999999888533322222 2 34
Q ss_pred eeEEEcccCccchh
Q 007577 560 VTSLNLANNFLTKF 573 (597)
Q Consensus 560 L~~L~L~~N~i~~~ 573 (597)
|+.|++++|+++-.
T Consensus 470 L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 470 LQKIWLHTNPWDCS 483 (520)
T ss_dssp CCEEECCSSCBCCC
T ss_pred ccEEECcCCCCccc
Confidence 99999999998753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-29 Score=267.29 Aligned_cols=368 Identities=17% Similarity=0.118 Sum_probs=256.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|+|++|.+... .+..+..+++|++|++++|.+... .-...+..+++|++|++++|.+.... +..
T Consensus 30 ~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 98 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLV---IRNNTFRGLSSLIILKLDYNQFLQLE----TGA 98 (455)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCE---ECTTTTTTCTTCCEEECTTCTTCEEC----TTT
T ss_pred CccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccce---ECcccccccccCCEEeCCCCccCccC----hhh
Confidence 6799999999999764 245678899999999999987421 01234567889999999999997652 344
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.+++..... ..+..+++|++|++++|.++..... ..+..+++|++|++++|.++......
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPA---SFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCC---GGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred ccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcc---cccCCCCcccEEeCCCCcccccChhh
Confidence 556799999999999998742211 2256679999999999998653211 12567899999999999887654422
Q ss_pred HHHHhhcC--CCCCEEEccCCCCChHHHHHHH----HhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 322 LAKGLEGN--KSLRELHLHGNSIGDEGIRALM----SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 322 l~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~----~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
+..+ ++|+.|++++|.+.+.....+. ..+ ...++|+.|++++|.++......+...+ ..++|+.|+++
T Consensus 174 ----l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~~~~L~~L~l~ 247 (455)
T 3v47_A 174 ----LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSITTLDLSGNGFKESMAKRFFDAI-AGTKIQSLILS 247 (455)
T ss_dssp ----SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEEEEEECTTSCCCHHHHHHHHHHT-TTCCEEEEECT
T ss_pred ----hhccccccccccccccCcccccchhhccccccccc-cccceeeeEecCCCcccccchhhhhccc-cccceeeEeec
Confidence 2222 6789999999987653211111 011 1335899999999999985333332221 23789999998
Q ss_pred CCCCCcHHHHH------HHHHHh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 396 MNDIGDEGAEK------IADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 396 ~n~l~~~~~~~------l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|.+....... ....+. ..++|++|++++|.++.. +...+..+++|++|++++|.+++... ..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDD----NAF 319 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECT----TTT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccCh----hHh
Confidence 88543210000 000011 136899999999998875 33446667999999999998876432 234
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHH
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFA 547 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~ 547 (597)
..+++|++|++++|.++...+. .+..+++|++|++++|.+++.....+..+ ++|++|++++|+++......
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSR----MFENLDKLEVLDLSYNHIRALGDQSFLGL-----PNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGG----GGTTCTTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCTTT
T ss_pred cCcccCCEEECCCCccCCcChh----HhcCcccCCEEECCCCcccccChhhcccc-----ccccEEECCCCccccCCHhH
Confidence 5568999999999998776443 34566999999999999987755555443 77999999999998654433
Q ss_pred HHHHHHhCCCCceeEEEcccCccchhh
Q 007577 548 IAQALKANEDVAVTSLNLANNFLTKFG 574 (597)
Q Consensus 548 l~~~l~~~~~~~L~~L~L~~N~i~~~~ 574 (597)
+... .+|+.|+|++|+++...
T Consensus 391 ~~~l------~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 391 FDRL------TSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTC------TTCCEEECCSSCBCCCT
T ss_pred hccC------CcccEEEccCCCcccCC
Confidence 3322 34999999999997644
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-28 Score=264.99 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=98.9
Q ss_pred ccceeeccCCCCChhHHHHHHHHH-HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYI-KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
+|+.|++++|.+.. ++..+ ..+++|++|++++|.+++..... ...+..+++|++|++++|+++.... ....
T Consensus 311 ~L~~L~l~~n~l~~-----ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~ 382 (549)
T 2z81_A 311 KVKRITVENSKVFL-----VPCSFSQHLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TGEI 382 (549)
T ss_dssp TCCEEEEESSCCCC-----CCHHHHHHCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HHHH
T ss_pred cceEEEeccCcccc-----CCHHHHhcCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--chhh
Confidence 34455555555443 22222 45666777777766666532111 1113445666666666666665321 1223
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHH-------------HHHHhcCCCccEEE
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV-------------ADMLRYNNTISILD 505 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------~~~l~~~~~L~~L~ 505 (597)
+..+++|++|++++|+++. +...+..+++|++|++++|.++....... ......+++|++|+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp GGGCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred hhcCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 4555666666666666542 11222333445555555554432110000 00012467788888
Q ss_pred ccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 506 LRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 506 l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+++|+++.... ... .++|+.|+|++|+++...+..+... .+|+.|++++|+++..
T Consensus 458 Ls~N~l~~ip~--~~~-----l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 458 ISRNKLKTLPD--ASL-----FPVLLVMKISRNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CCSSCCSSCCC--GGG-----CTTCCEEECCSSCCCCCCTTGGGGC------TTCCEEECCSSCBCCC
T ss_pred CCCCccCcCCC--ccc-----CccCCEEecCCCccCCcCHHHHhcC------cccCEEEecCCCccCC
Confidence 88887774321 111 2678888888888876544444333 2488888888887653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-30 Score=279.95 Aligned_cols=294 Identities=20% Similarity=0.222 Sum_probs=218.4
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (597)
+|++|++++|.++... ...+..+++|++|++++|.++ .++..+..+++|++|++++|.+..... ..+
T Consensus 255 ~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~ 321 (606)
T 3t6q_A 255 SVESINLQKHYFFNIS----SNTFHCFSGLQELDLTATHLS-----ELPSGLVGLSTLKKLVLSANKFENLCQ----ISA 321 (606)
T ss_dssp EEEEEECTTCCCSSCC----TTTTTTCTTCSEEECTTSCCS-----CCCSSCCSCTTCCEEECTTCCCSBGGG----GCG
T ss_pred ceeEEEeecCccCccC----HHHhccccCCCEEeccCCccC-----CCChhhcccccCCEEECccCCcCcCch----hhh
Confidence 4555566666555431 223556789999999999986 345566778999999999999987543 446
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEK 406 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 406 (597)
..+++|++|++++|.+... +.......+++|+.|++++|.++.... .+..+..+++|++|++++|.+.+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~---- 391 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLE----LGTGCLENLENLRELDLSHDDIETSDC--CNLQLRNLSHLQSLNLSYNEPLSL---- 391 (606)
T ss_dssp GGCTTCSEEECCSCSSCCB----CCSSTTTTCTTCCEEECCSSCCCEEEE--STTTTTTCTTCCEEECCSCSCEEE----
T ss_pred hccCcCCEEECCCCCcccc----cchhhhhccCcCCEEECCCCccccccC--cchhcccCCCCCEEECCCCcCCcC----
Confidence 7899999999999987532 111212456799999999999987310 134577899999999999998764
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
.+..+..+++|++|++++|.++.... ...+..+++|++|++++|.++.... ..+..+++|++|++++|.+++.
T Consensus 392 ~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 392 KTEAFKECPQLELLDLAFTRLKVKDA---QSPFQNLHLLKVLNLSHSLLDISSE----QLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp CTTTTTTCTTCSEEECTTCCEECCTT---CCTTTTCTTCCEEECTTCCCBTTCT----TTTTTCTTCCEEECTTCBCGGG
T ss_pred CHHHhcCCccCCeEECCCCcCCCccc---chhhhCcccCCEEECCCCccCCcCH----HHHhCCCCCCEEECCCCCCCcc
Confidence 34456778999999999998865321 1225667999999999998875432 3445679999999999998653
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
... ....+..+++|++|++++|.+++..+..+... ++|++|++++|+++...+..+... ..| .|+++
T Consensus 465 ~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l------~~L-~L~L~ 531 (606)
T 3t6q_A 465 NIQ-KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL-----KMMNHVDLSHNRLTSSSIEALSHL------KGI-YLNLA 531 (606)
T ss_dssp EEC-SSCGGGGCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCGGGGGGGTTC------CSC-EEECC
T ss_pred ccc-cchhhccCCCccEEECCCCccCccChhhhccc-----cCCCEEECCCCccCcCChhHhCcc------ccc-EEECc
Confidence 211 01235667999999999999998765555544 789999999999998777666543 348 99999
Q ss_pred cCccchhhHHHHHHHHH
Q 007577 567 NNFLTKFGQSALTDAKD 583 (597)
Q Consensus 567 ~N~i~~~~~~~l~~~~~ 583 (597)
+|.++......+..+..
T Consensus 532 ~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 532 SNHISIILPSLLPILSQ 548 (606)
T ss_dssp SSCCCCCCGGGHHHHHT
T ss_pred CCcccccCHhhcccCCC
Confidence 99999988877766543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-30 Score=282.38 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=82.7
Q ss_pred HHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 157 FAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
.+..+++|++|++++|.+... .+..+..+++|++|++++|.++... +..+..+++|++|++++|.+.....
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i----~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~~~~~- 121 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETI----EDKAWHGLHHLSNLILTGNPIQSFS----PGSFSGLTSLENLVAVETKLASLES- 121 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCCCC----TTSSTTCTTCCEEECTTSCCCCSSS-
T ss_pred hccCCccCcEEeCCCCccccc----CHHHhhchhhcCEeECCCCcccccC----hhhcCCcccCCEEEccCCccccccc-
Confidence 345678888888888887653 2345677788888888888876432 3445677888888888888765421
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYS 289 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 289 (597)
..+..+++|++|++++|.++... ++..+.++++|++|++++|+++..
T Consensus 122 ---~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 122 ---FPIGQLITLKKLNVAHNFIHSCK---LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp ---SCCTTCTTCCEEECCSSCCCCCC---CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred ---cccCCCCCCCEEeCCCCccccee---chHhHhhcCCCCEEEccCCcceec
Confidence 12445688888888888876421 344566778888888888887654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-30 Score=282.25 Aligned_cols=364 Identities=17% Similarity=0.196 Sum_probs=268.1
Q ss_pred HHHhcCCCcEEEcCCCCCCHH-------------HHHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCcc
Q 007577 157 FAKELRAFSSVDMSGRNFGDE-------------GLFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~ 221 (597)
.+..+++|++|+|++|.+... ....++..+. ++++|++|++++|.+... ++..+.++++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~ 276 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCSSCC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCCCCC
Confidence 356789999999999999872 1122567777 899999999999987643 445677889999
Q ss_pred EEEccCCC-CCh-hHHHHHHHHHhc------CCCcCEEEecCCCCChHHHHHHHH--HHHcCCCccEEEeccCCCChhhH
Q 007577 222 TLNLSGNP-IGD-EGVKCLCDILVD------NAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGF 291 (597)
Q Consensus 222 ~L~Ls~n~-l~~-~~~~~l~~~l~~------~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~ 291 (597)
+|++++|. ++. . ++..+.. +++|++|++++|.++. ++. .+..+++|++|++++|++++
T Consensus 277 ~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g--- 344 (636)
T 4eco_A 277 LINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEG--- 344 (636)
T ss_dssp EEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEE---
T ss_pred EEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCcc---
Confidence 99999998 876 3 3333333 4899999999999984 444 67788999999999999862
Q ss_pred HHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhc-CccccceeeccCC
Q 007577 292 TSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNN 369 (597)
Q Consensus 292 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n 369 (597)
.++ .+..+++|++|++++|.++.. +..+..+++ |++|++++|.++. ++..+.. ..++|+.|++++|
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~~l-----p~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQITEI-----PANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEEEC-----CTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSS
T ss_pred -chh-hhCCCCCCCEEECCCCccccc-----cHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCC
Confidence 223 566788999999999987733 244778888 9999999999874 2222221 1337999999999
Q ss_pred CCChhHHHHHHHHHH-------cCCCCcEEEccCCCCCcHHHHHHHH-HHhcCCCccEEEccCCCCChHHHHHHHHH---
Q 007577 370 SISAKGAFHVAEYIK-------NCKSLLWINLYMNDIGDEGAEKIAD-ALKQNRTITTIDLGGNNIHSKGASAIARV--- 438 (597)
Q Consensus 370 ~l~~~~~~~l~~~l~-------~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--- 438 (597)
.++.. ++..+. .+++|++|+|++|.++. ++. .+..+++|++|+|++|.++......+...
T Consensus 413 ~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 413 EIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISK-----FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp CTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCS-----CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCCCc----chhhhcccccccccCCCCCEEECcCCccCc-----CCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 99873 444455 66799999999999885 222 33457999999999999985221111100
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHh--hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc------CCC
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR------ANG 510 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~------~n~ 510 (597)
+.++++|++|+|++|.++. +...+. .+++|++|++++|+++.. ...+..+++|++|+++ +|.
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~i-----p~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSKF-----PTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp CTTGGGCCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred ccccCCccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCCc-----ChhhhcCCCCCEEECCCCcccccCc
Confidence 1112389999999999983 334443 679999999999999862 2335567999999995 465
Q ss_pred CChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHH
Q 007577 511 LRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581 (597)
Q Consensus 511 i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~ 581 (597)
+....+..+..+ ++|++|+|++|+++.. +..+. .+|+.|+|++|+++.++...+...
T Consensus 554 l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~i-p~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~~ 610 (636)
T 4eco_A 554 TLREWPEGITLC-----PSLTQLQIGSNDIRKV-NEKIT--------PNISVLDIKDNPNISIDLSYVCPY 610 (636)
T ss_dssp CCCCCCTTGGGC-----SSCCEEECCSSCCCBC-CSCCC--------TTCCEEECCSCTTCEEECTTTHHH
T ss_pred ccccChHHHhcC-----CCCCEEECCCCcCCcc-CHhHh--------CcCCEEECcCCCCccccHHhcchh
Confidence 655444444443 7899999999999643 22222 249999999999998776555443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-29 Score=282.35 Aligned_cols=371 Identities=15% Similarity=0.177 Sum_probs=266.3
Q ss_pred HHHhcCCCcEEEcCCCCCCHHH-------------HHHHHHHhc--cCCCccEEEeccCCCCHHHHHHHHHHhhhCCCcc
Q 007577 157 FAKELRAFSSVDMSGRNFGDEG-------------LFFLAESLG--YNQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~l~~~~-------------~~~l~~~l~--~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~ 221 (597)
.+..+++|++|+|++|.+.... -..++..+. .+++|+.|+|++|.+... ++..+..+++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~ 518 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ----LPDFLYDLPELQ 518 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS----CCGGGGGCSSCC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc----ChHHHhCCCCCC
Confidence 3667899999999999998721 112566666 899999999999986543 446677899999
Q ss_pred EEEccCCC-CCh-hHHHHHHHH---HhcCCCcCEEEecCCCCChHHHHHHHH--HHHcCCCccEEEeccCCCChhhHHHH
Q 007577 222 TLNLSGNP-IGD-EGVKCLCDI---LVDNAGVERLQLSSVDLRDEGAKAIAE--LLKNNSILRVLELNNNMIDYSGFTSL 294 (597)
Q Consensus 222 ~L~Ls~n~-l~~-~~~~~l~~~---l~~~~~L~~L~Ls~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l 294 (597)
+|+|++|+ ++. .-...+... +..+++|++|++++|.++. ++. .+.++++|++|++++|.++. +
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~~-----l 588 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRH-----L 588 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCCB-----C
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCccc-----c
Confidence 99999998 876 322223222 2235699999999999984 444 67788999999999999972 2
Q ss_pred HHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-CCEEEccCCCCChHHHHHHHHhhhc-CccccceeeccCCCCC
Q 007577 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSS-RKGKLAVLDIGNNSIS 372 (597)
Q Consensus 295 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~n~l~ 372 (597)
+ .+..+++|+.|++++|.++..+ ..+..+++ |++|++++|.++. ++..+.. ..++|+.|++++|.++
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~~lp-----~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIEEIP-----EDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCSCCC-----TTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECCSSCTT
T ss_pred h-hhcCCCcceEEECcCCccccch-----HHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECcCCcCC
Confidence 3 5677899999999999987433 44778888 9999999999874 2222211 1235999999999987
Q ss_pred hhHHHHHHHHHH--cCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCCccEEEccCCCCChHHHHHHHHH---hhcCCCcC
Q 007577 373 AKGAFHVAEYIK--NCKSLLWINLYMNDIGDEGAEKIADAL-KQNRTITTIDLGGNNIHSKGASAIARV---LKDNSVIT 446 (597)
Q Consensus 373 ~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~---l~~~~~L~ 446 (597)
.... .++..+. .+++|++|+|++|.++. ++..+ ..+++|++|+|++|.|+......+... +.+|++|+
T Consensus 658 g~ip-~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 658 SEGR-NISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp TTSS-SCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred Cccc-cchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence 6200 0111111 34589999999999985 33333 367999999999999884221111100 11234899
Q ss_pred EEECcCCCCCHHHHHHHHHHHh--hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC------CCCChHHHHH
Q 007577 447 SLDLAYNPIGADGAKALSEVLK--FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA------NGLRDEGAKC 518 (597)
Q Consensus 447 ~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~------n~i~~~~~~~ 518 (597)
+|+|++|.++. +...+. .+++|+.|+|++|.++.. ...+..+++|+.|++++ |.+....+..
T Consensus 732 ~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~l-----p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 732 TIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSF-----PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp EEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSC-----CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred EEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCcc-----chhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 99999999873 334444 679999999999999763 33455789999999977 6565544444
Q ss_pred HHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHH
Q 007577 519 LAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 582 (597)
Q Consensus 519 l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~ 582 (597)
+..+ ++|+.|+|++|+++. .+..+. .+|+.|+|++|++..+....+....
T Consensus 802 l~~L-----~~L~~L~Ls~N~L~~-Ip~~l~--------~~L~~LdLs~N~l~~i~~~~~~~~~ 851 (876)
T 4ecn_A 802 ITTC-----PSLIQLQIGSNDIRK-VDEKLT--------PQLYILDIADNPNISIDVTSVCPYI 851 (876)
T ss_dssp GGGC-----SSCCEEECCSSCCCB-CCSCCC--------SSSCEEECCSCTTCEEECGGGHHHH
T ss_pred HhcC-----CCCCEEECCCCCCCc-cCHhhc--------CCCCEEECCCCCCCccChHHccccc
Confidence 4443 789999999999953 222222 2599999999999998877776653
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-30 Score=281.67 Aligned_cols=344 Identities=14% Similarity=0.144 Sum_probs=246.3
Q ss_pred HHHHhccCCCccEEEeccCCCCHH-------------HHHHHHHHhh--hCCCccEEEccCCCCChhHHHHHHHHHhcCC
Q 007577 182 LAESLGYNQTAEEVSFAANGITAA-------------GIKAFDGVLQ--SNIALKTLNLSGNPIGDEGVKCLCDILVDNA 246 (597)
Q Consensus 182 l~~~l~~~~~L~~L~L~~~~l~~~-------------~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 246 (597)
++..+.++++|++|++++|.++.. ....++..+. ++++|++|++++|.+... ++..+..++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~ 273 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK----LPTFLKALP 273 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS----CCTTTTTCS
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc----ChHHHhcCC
Confidence 445677899999999999998862 1112555666 889999999999987654 556666789
Q ss_pred CcCEEEecCCC-CCh-HHHHHHHHH--HHcCCCccEEEeccCCCChhhHHHHHH--HHhhCCCccEEEcCCCCCC-hHHH
Q 007577 247 GVERLQLSSVD-LRD-EGAKAIAEL--LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGNYGG-ALGA 319 (597)
Q Consensus 247 ~L~~L~Ls~~~-l~~-~~~~~l~~~--l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~-~~~~ 319 (597)
+|++|++++|. ++. .....+... +..+++|++|++++|+++ .++. .+..+++|++|++++|.++ ..+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 99999999998 887 433333332 123488999999999986 2444 6778999999999999887 433
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccc-cceeeccCCCCChhHHHHHHHHHHcC--CCCcEEEccC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGK-LAVLDIGNNSISAKGAFHVAEYIKNC--KSLLWINLYM 396 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~~~--~~L~~L~Ls~ 396 (597)
.+..+++|++|++++|.++. ++..+ ..+++ |+.|++++|.++. ++..+... ++|++|++++
T Consensus 348 -----~~~~l~~L~~L~L~~N~l~~-----lp~~l-~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 348 -----AFGSEIKLASLNLAYNQITE-----IPANF-CGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp -----CCEEEEEESEEECCSSEEEE-----CCTTS-EEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCS
T ss_pred -----hhCCCCCCCEEECCCCcccc-----ccHhh-hhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcC
Confidence 46778899999999998763 33333 34456 9999999999885 55544443 3899999999
Q ss_pred CCCCcHHHHHHHHHHh-------cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHH---
Q 007577 397 NDIGDEGAEKIADALK-------QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEV--- 466 (597)
Q Consensus 397 n~l~~~~~~~l~~~l~-------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~--- 466 (597)
|.++.. ++..+. .+++|++|++++|.++.... ..+..+++|++|+|++|.++......+...
T Consensus 412 N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 412 NEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQISKFPK----ELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp SCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT----HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred CcCCCc----chhhhcccccccccCCCCCEEECcCCccCcCCH----HHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 998764 333344 56799999999999985322 223446999999999998873211111100
Q ss_pred HhhCCCcCEEecCCCCCChhHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEcc------CC
Q 007577 467 LKFHGNINTLKLGWCQIGASGAEFVADMLR--YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLA------FN 538 (597)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls------~n 538 (597)
++.+++|++|++++|.++... ..+. .+++|++|++++|.++.. +..+..+ ++|++|+|+ +|
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp-----~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~~l-----~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLS-----DDFRATTLPYLVGIDLSYNSFSKF-PTQPLNS-----STLKGFGIRNQRDAQGN 552 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCC-----GGGSTTTCTTCCEEECCSSCCSSC-CCGGGGC-----SSCCEEECCSCBCTTCC
T ss_pred ccccCCccEEECcCCcCCccC-----hhhhhccCCCcCEEECCCCCCCCc-ChhhhcC-----CCCCEEECCCCcccccC
Confidence 111238999999999998432 2333 679999999999999862 3333332 789999995 56
Q ss_pred CCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHH
Q 007577 539 EIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQS 576 (597)
Q Consensus 539 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~ 576 (597)
++....+..+... .+|+.|+|++|.|+.+...
T Consensus 553 ~l~~~~p~~l~~l------~~L~~L~Ls~N~l~~ip~~ 584 (636)
T 4eco_A 553 RTLREWPEGITLC------PSLTQLQIGSNDIRKVNEK 584 (636)
T ss_dssp BCCCCCCTTGGGC------SSCCEEECCSSCCCBCCSC
T ss_pred cccccChHHHhcC------CCCCEEECCCCcCCccCHh
Confidence 6665555555443 3599999999999776544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-28 Score=267.43 Aligned_cols=318 Identities=13% Similarity=0.144 Sum_probs=205.5
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+... .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~--- 114 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTI----EGDAFYSLGSLEHLDLSDNHLSSLSS----SWFGPLSSLKYLNLMGNPYQTLG--- 114 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCSCCH----HHHTTCTTCCEEECTTCCCSSSC---
T ss_pred hhcCCcccEEECCCCCcCcc----ChhhccccccCCEEECCCCccCccCH----HHhccCCCCcEEECCCCcccccc---
Confidence 45678888888888887653 23456677888888888888765432 33456778888888888776421
Q ss_pred HHHHHhcCCCcCEEEecCCC-CChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVD-LRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
++..+..+++|++|++++|. ++... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..
T Consensus 115 ~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 115 VTSLFPNLTNLQTLRIGNVETFSEIR----RIDFAGLTSLNELEIKALSLRNY----QSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp SSCSCTTCTTCCEEEEEESSSCCEEC----TTTTTTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSBSTT
T ss_pred hhhhhhccCCccEEECCCCccccccC----HhhhhcccccCeeeccCCccccc----ChhhhhccccCceEecccCcccc
Confidence 11234456788888888886 44321 12345567888888888887643 23455667888888888887765
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHH-------------
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYI------------- 383 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------- 383 (597)
.+. ..+..+++|++|++++|.+++.... ...+....++|+.|++++|.+++.....+...+
T Consensus 187 ~~~----~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 187 LLE----IFADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp HHH----HHHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cch----hhHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 443 2234688999999999887652100 000111233455555555555544333333222
Q ss_pred ----------------------------------------------HcCCCCcEEEccCCCCCcHHHHHHHHHH-hcCCC
Q 007577 384 ----------------------------------------------KNCKSLLWINLYMNDIGDEGAEKIADAL-KQNRT 416 (597)
Q Consensus 384 ----------------------------------------------~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~ 416 (597)
...++|++|++++|.++. ++..+ ..+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-----ip~~~~~~l~~ 335 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-----VPCSFSQHLKS 335 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-----CCHHHHHHCTT
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-----CCHHHHhcCcc
Confidence 233456666666666553 33333 45899
Q ss_pred ccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHh
Q 007577 417 ITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLR 496 (597)
Q Consensus 417 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 496 (597)
|++|++++|.+++..... ...+..+++|++|++++|.++... .....+..+++|++|++++|+++.. ...+.
T Consensus 336 L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~~ 407 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHPM-----PDSCQ 407 (549)
T ss_dssp CCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCCC-----CSCCC
T ss_pred ccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCccC-----Chhhc
Confidence 999999999999854322 122566799999999999997642 2234567789999999999998743 22344
Q ss_pred cCCCccEEEccCCCCCh
Q 007577 497 YNNTISILDLRANGLRD 513 (597)
Q Consensus 497 ~~~~L~~L~l~~n~i~~ 513 (597)
.+++|++|++++|.++.
T Consensus 408 ~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCTTCCEEECTTSCCSC
T ss_pred ccccccEEECCCCCccc
Confidence 56778888888887654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-29 Score=262.47 Aligned_cols=366 Identities=15% Similarity=0.129 Sum_probs=261.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcC
Q 007577 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDN 245 (597)
Q Consensus 166 ~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 245 (597)
.++.+++.++.. +. -.++|++|++++|.++... +..+..+++|++|++++|.+...- -...+..+
T Consensus 14 ~~~c~~~~l~~l-----p~---l~~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l 78 (455)
T 3v47_A 14 NAICINRGLHQV-----PE---LPAHVNYVDLSLNSIAELN----ETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGL 78 (455)
T ss_dssp EEECCSSCCSSC-----CC---CCTTCCEEECCSSCCCEEC----TTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTC
T ss_pred ccCcCCCCcccC-----CC---CCCccCEEEecCCccCcCC----hhHhccCccccEEECcCCcccceE---Cccccccc
Confidence 566666666542 22 1378999999999987542 344667899999999999875220 12334567
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
++|++|++++|.++.. .+..+..+++|++|++++|.+++.... ...+..+++|++|++++|.++..... ..
T Consensus 79 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~---~~ 149 (455)
T 3v47_A 79 SSLIILKLDYNQFLQL----ETGAFNGLANLEVLTLTQCNLDGAVLS--GNFFKPLTSLEMLVLRDNNIKKIQPA---SF 149 (455)
T ss_dssp TTCCEEECTTCTTCEE----CTTTTTTCTTCCEEECTTSCCBTHHHH--SSTTTTCTTCCEEECCSSBCCSCCCC---GG
T ss_pred ccCCEEeCCCCccCcc----ChhhccCcccCCEEeCCCCCCCccccC--cccccCcccCCEEECCCCccCccCcc---cc
Confidence 9999999999999875 234556679999999999999753211 12266789999999999998765321 12
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH----HHHHHHcCCCCcEEEccCCCCCc
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH----VAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~----l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+.++++|++|++++|.++......+.. + ...+|+.|++++|.+....... ....+..+++|++|++++|.+++
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~-l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-F--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGG-G--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhc-c--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc
Confidence 678999999999999987643222211 1 1247999999999887632111 11113356789999999999998
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHH----------HHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGA----------SAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHG 471 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 471 (597)
.....+...+ ..++|+.|++++|.+..... ..+.. ..+++|++|++++|.++... ...+..++
T Consensus 227 ~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~~----~~~~~~l~ 299 (455)
T 3v47_A 227 SMAKRFFDAI-AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG--LEASGVKTCDLSKSKIFALL----KSVFSHFT 299 (455)
T ss_dssp HHHHHHHHHT-TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG--GTTSCCCEEECCSSCCCEEC----TTTTTTCT
T ss_pred cchhhhhccc-cccceeeEeeccccccccccchhhhccCccccccc--ccccCceEEEecCccccccc----hhhcccCC
Confidence 7666665543 34899999999885433110 00000 12368999999999987642 33456679
Q ss_pred CcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHH
Q 007577 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~ 551 (597)
+|++|++++|.+++..+.. +..+++|++|++++|.+++.....+... ++|++|++++|+++...+..+...
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcChhHhcCc-----ccCCEEECCCCcccccChhhcccc
Confidence 9999999999998764433 4556999999999999987655555443 789999999999997766555443
Q ss_pred HHhCCCCceeEEEcccCccchhhHHHHHH
Q 007577 552 LKANEDVAVTSLNLANNFLTKFGQSALTD 580 (597)
Q Consensus 552 l~~~~~~~L~~L~L~~N~i~~~~~~~l~~ 580 (597)
.+|+.|+|++|.|+......+..
T Consensus 371 ------~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 371 ------PNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ------TTCCEEECCSSCCSCCCTTTTTT
T ss_pred ------ccccEEECCCCccccCCHhHhcc
Confidence 35999999999999877665543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-28 Score=273.70 Aligned_cols=349 Identities=15% Similarity=0.168 Sum_probs=257.3
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCC-CCH-HHHHHHHH---HhhhCCCccEEEccCCCCChhH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANG-ITA-AGIKAFDG---VLQSNIALKTLNLSGNPIGDEG 234 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~-l~~-~~~~~l~~---~l~~~~~L~~L~Ls~n~l~~~~ 234 (597)
.+++|++|+|++|.+... ++..+..+++|+.|++++|+ ++. .-...+.. .+..+++|++|++++|.+..
T Consensus 489 ~L~~L~~L~Ls~N~l~~~----iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-- 562 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ----LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-- 562 (876)
T ss_dssp GCTTCCEEEEESCTTCCS----CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB--
T ss_pred cCCCCCEEECcCCCCCcc----ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc--
Confidence 789999999999987543 56778889999999999998 886 32333322 23456699999999999984
Q ss_pred HHHHHH--HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCC-ccEEEcCC
Q 007577 235 VKCLCD--ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNG 311 (597)
Q Consensus 235 ~~~l~~--~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~ 311 (597)
++. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++..+..+++ |+.|++++
T Consensus 563 ---ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~-----~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 563 ---FPASASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIE-----EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp ---CCCHHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCS-----CCCTTSCEECTTCCEEECCS
T ss_pred ---cCChhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCccc-----cchHHHhhccccCCEEECcC
Confidence 444 66778999999999999984 33 5667799999999999986 34555777888 99999999
Q ss_pred CCCChHHHHHHHHHhhcC--CCCCEEEccCCCCChHHHHHHHHhhh-cCccccceeeccCCCCChhHHHHHHH-HHHcCC
Q 007577 312 NYGGALGANALAKGLEGN--KSLRELHLHGNSIGDEGIRALMSGLS-SRKGKLAVLDIGNNSISAKGAFHVAE-YIKNCK 387 (597)
Q Consensus 312 n~i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~i~~~~~~~l~~~l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~ 387 (597)
|.++..+ ..+... ++|+.|++++|.+.+.. +.+...+. ...++|+.|++++|.++. ++. .+..++
T Consensus 629 N~L~~lp-----~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-----lp~~~~~~l~ 697 (876)
T 4ecn_A 629 NKLKYIP-----NIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-----FPTELFATGS 697 (876)
T ss_dssp SCCCSCC-----SCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-----CCHHHHHTTC
T ss_pred CCCCcCc-----hhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-----cCHHHHccCC
Confidence 9987433 233344 34999999999987531 11111110 123479999999999996 444 345789
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhc--------CCCccEEEccCCCCChHHHHHHHHHhh--cCCCcCEEECcCCCCCH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQ--------NRTITTIDLGGNNIHSKGASAIARVLK--DNSVITSLDLAYNPIGA 457 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~--------~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~ 457 (597)
+|++|+|++|.++. ++..+.. +++|++|+|++|+|+. ++..+. .+++|+.|+|++|.++.
T Consensus 698 ~L~~L~Ls~N~L~~-----ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 698 PISTIILSNNLMTS-----IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCSEEECCSCCCSC-----CCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCEEECCCCcCCc-----cChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 99999999999874 3332222 2389999999999984 445555 78999999999999975
Q ss_pred HHHHHHHHHHhhCCCcCEEecCC------CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCcccc
Q 007577 458 DGAKALSEVLKFHGNINTLKLGW------CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~ 531 (597)
+...+..+++|+.|+|++ |.+.... ...+..+++|+.|++++|.++..... + .++|+
T Consensus 768 -----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i----p~~l~~L~~L~~L~Ls~N~L~~Ip~~-----l---~~~L~ 830 (876)
T 4ecn_A 768 -----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW----PTGITTCPSLIQLQIGSNDIRKVDEK-----L---TPQLY 830 (876)
T ss_dssp -----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC----CTTGGGCSSCCEEECCSSCCCBCCSC-----C---CSSSC
T ss_pred -----cchhhhcCCCCCEEECCCCCCcccccccccC----hHHHhcCCCCCEEECCCCCCCccCHh-----h---cCCCC
Confidence 344566789999999977 5555442 23456689999999999999653211 1 15799
Q ss_pred EEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 532 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
.|||++|++....+..+..... +..+.|.+|...+
T Consensus 831 ~LdLs~N~l~~i~~~~~~~~~~------~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 831 ILDIADNPNISIDVTSVCPYIE------AGMYVLLYDKTQD 865 (876)
T ss_dssp EEECCSCTTCEEECGGGHHHHH------TTCCEEECCTTSE
T ss_pred EEECCCCCCCccChHHcccccc------chheeecCCCccc
Confidence 9999999998766666666554 4455666665544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-28 Score=260.81 Aligned_cols=366 Identities=14% Similarity=0.143 Sum_probs=241.0
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|++++|.+.... +..+..+++|++|++++|+++... +..+..+++|++|++++|.++... ..
T Consensus 21 ~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELW----TSDILSLSKLRILIISHNRIQYLD----ISVFKFNQELEYLDLSHNKLVKIS-----CH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSCCCEEE----GGGGTTCTTCCEEECCSSCCCEEE-----CC
T ss_pred ccccEEECCCCcccccC----hhhccccccccEEecCCCccCCcC----hHHhhcccCCCEEecCCCceeecC-----cc
Confidence 68999999999887642 356778899999999999987542 345667889999999999988532 22
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc--cEEEcCCCCC--ChH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (597)
.+++|++|++++|.++... ++..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ ...
T Consensus 88 --~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKS-------SVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp --CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGG-------GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred --ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchh-------hccccccceeeEEEeeccccccccc
Confidence 5799999999999987521 234566779999999999999753 24456677 9999999887 322
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCC--ChHHHHHHHHhhhcCccccceeeccCCCCCh
Q 007577 318 GANALAK----------------------GLEGNKSLRELHLHGNSI--GDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (597)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~i--~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (597)
....+.. .+..+++|+.|++++|.. .-..+......+ ...++|+.|++++|.++.
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGG-GGCTTCCEEEEEEEEEEH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhh-ccccchhhccccccccCH
Confidence 2211111 122356777777777751 111122222233 345689999999999988
Q ss_pred hHHHHHHHHHHcCCCCcEEEccCCCCCcH---HH-------------------------HHHHHHH--------------
Q 007577 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDE---GA-------------------------EKIADAL-------------- 411 (597)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~---~~-------------------------~~l~~~l-------------- 411 (597)
.....+...+. .++|++|++++|.+++. .+ ..+...+
T Consensus 235 ~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~ 313 (520)
T 2z7x_B 235 NSFIRILQLVW-HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313 (520)
T ss_dssp HHHHHHHHHHH-TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHHhh-hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc
Confidence 76665555443 46788888887765421 00 1122211
Q ss_pred -------hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 412 -------KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 412 -------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+++|++|++++|.+++.. ...+..+++|++|++++|.++.. ..+...+..+++|++|++++|.++
T Consensus 314 l~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 314 MVHMLCPSKISPFLHLDFSNNLLTDTV----FENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp CCCCCCCSSCCCCCEEECCSSCCCTTT----TTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCB
T ss_pred cccccchhhCCcccEEEeECCccChhh----hhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCC
Confidence 34667788888888777632 23345667888888888877642 334455667788888888888876
Q ss_pred h-hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEE
Q 007577 485 A-SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (597)
Q Consensus 485 ~-~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L 563 (597)
. .... .+..+++|++|++++|.+++..+..+ .++|+.|++++|+|+. .+..+... .+|+.|
T Consensus 388 ~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l-------~~~L~~L~Ls~N~l~~-ip~~~~~l------~~L~~L 449 (520)
T 2z7x_B 388 YDEKKG----DCSWTKSLLSLNMSSNILTDTIFRCL-------PPRIKVLDLHSNKIKS-IPKQVVKL------EALQEL 449 (520)
T ss_dssp CCGGGC----SCCCCTTCCEEECCSSCCCGGGGGSC-------CTTCCEEECCSSCCCC-CCGGGGGC------TTCCEE
T ss_pred cccccc----hhccCccCCEEECcCCCCCcchhhhh-------cccCCEEECCCCcccc-cchhhhcC------CCCCEE
Confidence 5 2211 23445788888888888775432221 1568888888888873 22223222 348899
Q ss_pred EcccCccchhhHHHH
Q 007577 564 NLANNFLTKFGQSAL 578 (597)
Q Consensus 564 ~L~~N~i~~~~~~~l 578 (597)
+|++|+|+.+....+
T Consensus 450 ~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 450 NVASNQLKSVPDGIF 464 (520)
T ss_dssp ECCSSCCCCCCTTTT
T ss_pred ECCCCcCCccCHHHh
Confidence 999998887665533
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-28 Score=265.97 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=109.0
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.+++. ++..+..+++|++|++++|+++... .++..+..+++|++|++++|.++.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~-- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDVSLNSLNSHAYD-- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEECTTSCCBSCCSS--
T ss_pred cCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEECCCCcCCCccCh--
Confidence 4567888888888888764 3445667788888888888887622 2344566778888888888887641110
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
..+..+++|++|++++|.+++..+..+. ++|+.|++++|.|+..... +.. .++|++|++++|+++..
T Consensus 422 -~~~~~l~~L~~L~l~~n~l~~~~~~~l~------~~L~~L~L~~N~l~~ip~~-~~~-----l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 422 -RTCAWAESILVLNLSSNMLTGSVFRCLP------PKVKVLDLHNNRIMSIPKD-VTH-----LQALQELNVASNQLKSV 488 (562)
T ss_dssp -CCCCCCTTCCEEECCSSCCCGGGGSSCC------TTCSEEECCSSCCCCCCTT-TTS-----SCCCSEEECCSSCCCCC
T ss_pred -hhhcCcccCCEEECCCCCCCcchhhhhc------CcCCEEECCCCcCcccChh-hcC-----CCCCCEEECCCCCCCCC
Confidence 1234457888889988888754322111 5899999999988743211 222 26799999999988853
Q ss_pred HHHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 544 GAFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 544 ~~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
....+.. . .+|+.|++++|++.-
T Consensus 489 ~~~~~~~----l--~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 489 PDGVFDR----L--TSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTSTTT----C--TTCCCEECCSCCBCC
T ss_pred CHHHHhc----C--CCCCEEEecCCCcCC
Confidence 3221222 2 248999999998874
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-29 Score=272.11 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=59.6
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+....
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~--- 144 (606)
T 3vq2_A 76 WHGLHHLSNLILTGNPIQSF----SPGSFSGLTSLENLVAVETKLASLES----FPIGQLITLKKLNVAHNFIHSCK--- 144 (606)
T ss_dssp TTTCTTCCEEECTTCCCCCC----CTTSSTTCTTCCEEECTTSCCCCSSS----SCCTTCTTCCEEECCSSCCCCCC---
T ss_pred hhchhhcCEeECCCCccccc----ChhhcCCcccCCEEEccCCccccccc----cccCCCCCCCEEeCCCCccccee---
Confidence 34567788888887777653 24456667778888887777653221 12456677777777777775421
Q ss_pred HHHHHhcCCCcCEEEecCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDE 261 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~ 261 (597)
++..+..+++|++|++++|.++..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEE
T ss_pred chHhHhhcCCCCEEEccCCcceec
Confidence 234455667777777777776654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-29 Score=271.61 Aligned_cols=364 Identities=14% Similarity=0.116 Sum_probs=216.3
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.+.... ...+..+++|++|++++|.++... ...+..+++|++|++++|.+......
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~- 118 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLASLENF- 118 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTSCCCCSTTC-
T ss_pred hhCCCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCcCCccC----HhhhcCccccccccccccccccCCCc-
Confidence 456788888888888776531 345667788888888888876432 23455677888888888877654221
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc----cEEEcCCCC
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI----RSLHLNGNY 313 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L----~~L~L~~n~ 313 (597)
.+..+++|++|++++|.++... ++..+.++++|++|++++|+++...... +..+.+| +.|++++|.
T Consensus 119 ---~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 119 ---PIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD----LRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp ---SCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSCCCEECGGG----GHHHHTCTTCCCEEECTTCC
T ss_pred ---cccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCccceecHHH----ccchhccchhhhhcccCCCC
Confidence 2445788888888888876521 2344566788888888888876532111 1122222 445554444
Q ss_pred CChHHHHH------------------------------------------------------------------------
Q 007577 314 GGALGANA------------------------------------------------------------------------ 321 (597)
Q Consensus 314 i~~~~~~~------------------------------------------------------------------------ 321 (597)
+.......
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 33211100
Q ss_pred -----HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhh-----------------------------------------
Q 007577 322 -----LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLS----------------------------------------- 355 (597)
Q Consensus 322 -----l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----------------------------------------- 355 (597)
.+..+..+++|++|++++|.+.. +...+.
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECS-----CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC
T ss_pred hhhhhchhhhcCcCcccEEEecCccchh-----hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc
Confidence 00112233455555555544332 000000
Q ss_pred cCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 356 SRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAI 435 (597)
Q Consensus 356 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 435 (597)
..+++|+.|++++|.++..+. .+..+..+++|++|++++|.+... ...+..+++|++|++++|.++....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~--- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE--- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESCTT---
T ss_pred ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccc-----cccccccCCCCEEEccCCccccccc---
Confidence 123455566666665554210 023455666666666666665542 1124456677777777776554211
Q ss_pred HHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHH
Q 007577 436 ARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEG 515 (597)
Q Consensus 436 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~ 515 (597)
...+..+++|++|++++|.+.... ...+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++..
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred hhhhhcCCCCCEEeCcCCcccccc----hhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCC
Confidence 012455678888888888765432 233455688888888888875311 1234556789999999999888765
Q ss_pred HHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchh
Q 007577 516 AKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKF 573 (597)
Q Consensus 516 ~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~ 573 (597)
+..+..+ ++|++|++++|++++..+..+... .+|+.|++++|+++..
T Consensus 487 ~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l------~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 487 PTAFNSL-----SSLQVLNMASNQLKSVPDGIFDRL------TSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTTTTTC-----TTCCEEECCSSCCSCCCTTTTTTC------TTCCEEECCSSCBCCC
T ss_pred hhhhhcc-----cCCCEEeCCCCcCCCCCHHHhhcc------cCCcEEEecCCcccCC
Confidence 5555443 779999999998886544444332 3489999999988753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-28 Score=270.44 Aligned_cols=363 Identities=17% Similarity=0.132 Sum_probs=193.6
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccC--CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYN--QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~--~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
.++|++|++++|.+.... +..+..+ ++|+.|++++|.++... ...+..+++|++|++++|.+....
T Consensus 221 ~~~L~~L~L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~---- 288 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVG----NDSFAWLPQLEYFFLEYNNIQHLF---- 288 (680)
T ss_dssp TSCCCEEECTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSCCBSEEC----
T ss_pred hccccEEEccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccC----cccccCcccccEeeCCCCccCccC----
Confidence 367777777777765432 2223333 34777777777765432 223445667777777777665432
Q ss_pred HHHHhcCCCcCEEEecCCCCChH-HHHHHHH----HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc--------
Q 007577 239 CDILVDNAGVERLQLSSVDLRDE-GAKAIAE----LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR-------- 305 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~-~~~~l~~----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~-------- 305 (597)
...+..+++|++|++++|..... ....++. .+..+++|++|++++|.++... +..+..+++|+
T Consensus 289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK----SNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC----TTTTTTCTTCCEEECTTCB
T ss_pred hhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC----hhHhccccCCcEEECCCCc
Confidence 22233345555555554432210 0000100 1233455555555555543211 12233344444
Q ss_pred --------------------EEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee
Q 007577 306 --------------------SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 306 --------------------~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
.|++++|.++.... ..+..+++|+.|++++|.+.+. +.......+++|+.|+
T Consensus 365 ~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~~l~~L~~L~ 436 (680)
T 1ziw_A 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIES----DAFSWLGHLEVLDLGLNEIGQE----LTGQEWRGLENIFEIY 436 (680)
T ss_dssp SCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCEEE----CCSGGGTTCTTCCEEE
T ss_pred hhhhhcchhhhcccccCcCceEECCCCCCCeECh----hhhhCCCCCCEEeCCCCcCccc----cCcccccCcccccEEe
Confidence 44555554443322 2344556666666666655421 1101112334566666
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
+++|.++.. .+..+..+++|++|++++|.+... ..++..+..+++|++|++++|+|+... ...+..+++|
T Consensus 437 Ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~--~~~p~~~~~l~~L~~L~Ls~N~l~~i~----~~~~~~l~~L 506 (680)
T 1ziw_A 437 LSYNKYLQL----TRNSFALVPSLQRLMLRRVALKNV--DSSPSPFQPLRNLTILDLSNNNIANIN----DDMLEGLEKL 506 (680)
T ss_dssp CCSCSEEEC----CTTTTTTCTTCCEEECTTSCCBCT--TCSSCTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTC
T ss_pred cCCCCccee----ChhhhhcCcccccchhcccccccc--ccCCcccccCCCCCEEECCCCCCCcCC----hhhhcccccc
Confidence 666655441 223344566666666666655421 113344556677888888887776532 1234556778
Q ss_pred CEEECcCCCCCHHHHHHHH----HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 446 TSLDLAYNPIGADGAKALS----EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~ 521 (597)
++|++++|.++......+. ..+..+++|++|++++|+++..... .+..+++|+.|++++|.++......+..
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE----VFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHH----HcccccCcceeECCCCCCCcCCHhHhCC
Confidence 8888888877543211111 1145567788888888877644322 2445678888888888777543333322
Q ss_pred HHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 522 ~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
. ++|+.|++++|+++......+...+ .+|+.|++++|++.
T Consensus 583 l-----~~L~~L~L~~N~l~~~~~~~~~~~~-----~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 583 Q-----VSLKSLNLQKNLITSVEKKVFGPAF-----RNLTELDMRFNPFD 622 (680)
T ss_dssp C-----TTCCEEECTTSCCCBCCHHHHHHHH-----TTCSEEECTTCCCC
T ss_pred C-----CCCCEEECCCCcCCccChhHhcccc-----cccCEEEccCCCcc
Confidence 2 6688888888888766655554222 24788888877654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-27 Score=242.93 Aligned_cols=316 Identities=16% Similarity=0.115 Sum_probs=197.7
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+++++.|+++++.++... ...+..+++|+.|++++|.++.... ..+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~----~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCC----hhHhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcCC----HH
Confidence 577888888887766532 1234556788888888887764322 23456677888888888776542 23
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|++|++++|.++... ...+..+++|++|++++|.++... +..+..+++|++|++++|.++..+
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred HhcCCCCCCEEECCCCccCcCC----HHHhcCCCCCcEEECCCCccCccC----hhhccCCCCCCEEECCCCcCCccc--
Confidence 3445678888888888777531 122355677888888888775422 233456777888888887776543
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+++|++|++++|.++.. ...+.|+.|++++|.++.. +. ...++|++|++++|.++
T Consensus 182 -----~~~l~~L~~L~l~~n~l~~~----------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 182 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCSSCSEEECCSSCCCEE-----EC--CCCSSCCEEECCSSCCC
T ss_pred -----cccccccceeeccccccccc----------CCCCcceEEECCCCeeeec-----cc--cccccccEEECCCCCCc
Confidence 34567778888877776642 2233677777777777662 11 22467777777777776
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
+. ..+..+++|++|++++|.++... +..+..+++|++|++++|.++... .....+++|++|++++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVALN-----LYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECCSSCCCEEE-----CSSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcC----hhHccccccCCEEECCCCcCcccC-----cccCCCCCCCEEECCC
Confidence 53 24556777777777777776542 233455577777777777765421 1223456777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHH
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAI 548 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l 548 (597)
|.++..... +. .+++|+.|++++|.|++.. +.. .++|+.|++++|.+.......+
T Consensus 305 n~l~~~~~~-~~----~l~~L~~L~L~~N~i~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 305 NHLLHVERN-QP----QFDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SCCCCCGGG-HH----HHTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHHHH
T ss_pred CcceecCcc-cc----ccCcCCEEECCCCccceeC---chh-----hccCCEEEcCCCCccchhHHHH
Confidence 776643221 22 2367777777777766542 111 1567777777777776554444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-28 Score=271.80 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (597)
+.+|+.|++.++.+.......++..+ ..++|++|++++|.+.+.....+. .+ ..++|+.|++++|.++.. .+
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~-~l--~~~~L~~L~Ls~n~l~~~----~~ 265 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFL-GL--KWTNLTMLDLSYNNLNVV----GN 265 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTG-GG--GGSCCCEEECTTSCCCEE----CT
T ss_pred hhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhh-cc--CcCCCCEEECCCCCcCcc----Cc
Confidence 34444444444444333332332222 235566666666655443211110 00 012377777777766652 23
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHH-HHHHHH----HhhcCCCcCEEECcCCCC
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKG-ASAIAR----VLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~----~l~~~~~L~~L~Ls~n~i 455 (597)
..+..+++|++|++++|.+++. .+..+..+++|++|++++|...... ...+.. .+..+++|++|++++|.+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHL----FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEE----CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ccccCcccccEeeCCCCccCcc----ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 4456677777777777766653 2233444556666666554322100 000110 234456666666666665
Q ss_pred CHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 456 GADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 456 ~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+.... ..+..+++|++|++++|.
T Consensus 342 ~~~~~----~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 342 PGIKS----NMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCCT----TTTTTCTTCCEEECTTCB
T ss_pred CCCCh----hHhccccCCcEEECCCCc
Confidence 54221 223344566666665554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-26 Score=241.09 Aligned_cols=316 Identities=18% Similarity=0.164 Sum_probs=243.3
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+.+++.|+++++.++..... .+..+++|++|++++|.+.+... ..+..+++|++|++++|.++... +.
T Consensus 44 l~~l~~l~l~~~~l~~l~~~----~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 111 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA----LLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 111 (390)
T ss_dssp GCCCSEEEEESCEESEECTH----HHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred cCCceEEEecCCchhhCChh----HhcccccCcEEECCCCcccccCh----hhccCCCCcCEEECCCCCCCcCC----HH
Confidence 47999999999987754332 34567899999999999987532 24456799999999999998752 33
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.++.-. ...+..+++|++|++++|.++.... ..+..+++|++|++++|.++..+.
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~- 182 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLSSNRLTHVDL- 182 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEECCSSCCSBCCG-
T ss_pred HhcCCCCCCEEECCCCccCcCC----HHHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEECCCCcCCcccc-
Confidence 4566799999999999986321 2224678999999999999876543 346789999999999999887431
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
...++|+.|++++|.++.. ...++|++|++++|.++... . ...++|++|++++|.++
T Consensus 183 -------~~l~~L~~L~l~~n~l~~~---------~~~~~L~~L~l~~n~l~~~~-----~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 183 -------SLIPSLFHANVSYNLLSTL---------AIPIAVEELDASHNSINVVR-----G--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp -------GGCTTCSEEECCSSCCSEE---------ECCSSCSEEECCSSCCCEEE-----C--CCCSSCCEEECCSSCCC
T ss_pred -------ccccccceeeccccccccc---------CCCCcceEEECCCCeeeecc-----c--cccccccEEECCCCCCc
Confidence 3446899999999998872 34578999999999988631 1 23579999999999998
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRA 508 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 508 (597)
+. ..+..+++|++|++++|.++.... ..+..+++|++|++++|.++.... .+..+++|++|++++
T Consensus 240 ~~------~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 DT------AWLLNYPGLVEVDLSYNELEKIMY----HPFVKMQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSH 304 (390)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEES----GGGTTCSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCS
T ss_pred cc------HHHcCCCCccEEECCCCcCCCcCh----hHccccccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCC
Confidence 74 346778999999999999986532 344567999999999999976432 224578999999999
Q ss_pred CCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccchhhHHHH
Q 007577 509 NGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSAL 578 (597)
Q Consensus 509 n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l 578 (597)
|.++... ..+... ++|++|++++|.|+... +... .+|+.|++++|+++......+
T Consensus 305 n~l~~~~-~~~~~l-----~~L~~L~L~~N~i~~~~-------~~~~--~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 305 NHLLHVE-RNQPQF-----DRLENLYLDHNSIVTLK-------LSTH--HTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp SCCCCCG-GGHHHH-----TTCSEEECCSSCCCCCC-------CCTT--CCCSEEECCSSCEEHHHHHHH
T ss_pred CcceecC-cccccc-----CcCCEEECCCCccceeC-------chhh--ccCCEEEcCCCCccchhHHHH
Confidence 9988643 234444 77999999999998653 2222 359999999999987654433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-27 Score=253.30 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=142.5
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|+|++|.+.... ...+..+++|++|+|++|.++... +..+..+++|++|+|++|.++.... ..
T Consensus 32 ~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 99 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVE----PGAFNNLFNLRTLGLRSNRLKLIPL----GV 99 (477)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCSCCT----TS
T ss_pred CCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeC----hhhhhCCccCCEEECCCCcCCccCc----cc
Confidence 45666677666665431 234555666666666666655431 2234455666666666666654321 12
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..+..+++|++|++++|.++....
T Consensus 100 ~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~-- 169 (477)
T 2id5_A 100 FTGLSNLTKLDISENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYIS----HRAFSGLNSLEQLTLEKCNLTSIPT-- 169 (477)
T ss_dssp STTCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEEECCTTCCEEC----TTSSTTCTTCCEEEEESCCCSSCCH--
T ss_pred ccCCCCCCEEECCCCccccC----ChhHccccccCCEEECCCCccceeC----hhhccCCCCCCEEECCCCcCcccCh--
Confidence 23456666666666665543 1223344566666666666554321 1223345566666666665554433
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
..+..+++|+.|++++|.+..... .....+++|+.|++++|..... ++..+....+|++|++++|.++.
T Consensus 170 --~~l~~l~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 170 --EALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp --HHHTTCTTCCEEEEESCCCCEECT-----TCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCSEEEEESSCCCS
T ss_pred --hHhcccCCCcEEeCCCCcCcEeCh-----hhcccCcccceeeCCCCccccc----cCcccccCccccEEECcCCcccc
Confidence 234455566666666655543211 1112334555555555543321 12222223355555555555543
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
.. ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|++++|
T Consensus 239 ~~----~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 239 VP----YLAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLAVVEP----YAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CC----HHHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCSEECT----TTBTTCTTCCEEECCSS
T ss_pred cC----HHHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccceECH----HHhcCcccCCEEECCCC
Confidence 21 1223344555555555555543221 122334555555555554443211 12233445555555555
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
+++...... +..+++|++|++++|.+
T Consensus 307 ~l~~~~~~~----~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 307 QLTTLEESV----FHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCSCCCGGG----BSCGGGCCEEECCSSCE
T ss_pred cCceeCHhH----cCCCcccCEEEccCCCc
Confidence 544332211 22234455555555543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-27 Score=255.02 Aligned_cols=367 Identities=16% Similarity=0.165 Sum_probs=239.0
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|++++|.+.... +..+..+++|++|++++|.++... +..+..+++|++|++++|.++... ..
T Consensus 52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~lp-----~~ 118 (562)
T 3a79_B 52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLD----FHVFLFNQDLEYLDVSHNRLQNIS-----CC 118 (562)
T ss_dssp TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC-----SC
T ss_pred CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCC----HHHhCCCCCCCEEECCCCcCCccC-----cc
Confidence 67889999998887532 346677889999999999887532 234566788999999998887532 22
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCc--cEEEcCCCCC--ChH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTI--RSLHLNGNYG--GAL 317 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~i--~~~ 317 (597)
.+++|++|++++|.++... ++..+.++++|++|++++|+++... +..+++| ++|++++|.+ +..
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLP---VCKEFGNLTKLTFLGLSAAKFRQLD-------LLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCC---CCGGGGGCTTCCEEEEECSBCCTTT-------TGGGTTSCEEEEEEEESSCCCCSS
T ss_pred --ccccCCEEECCCCCccccC---chHhhcccCcccEEecCCCccccCc-------hhhhhhceeeEEEeeccccccccc
Confidence 4688999999999887631 2234566788999999998887532 2334445 8999988877 332
Q ss_pred HHHHHHH----------------------HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhH
Q 007577 318 GANALAK----------------------GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKG 375 (597)
Q Consensus 318 ~~~~l~~----------------------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 375 (597)
....+.. .+..+++|+.|++++|...-..+......+. ..++|+.|++.++.++...
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEECHHH
T ss_pred CcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCcHHH
Confidence 2111100 0113446777777777544333333333333 4457888999888888876
Q ss_pred HHHHHHHHHcCCCCcEEEccCCCCCcHH---H-------------------------HHHHHHH----------------
Q 007577 376 AFHVAEYIKNCKSLLWINLYMNDIGDEG---A-------------------------EKIADAL---------------- 411 (597)
Q Consensus 376 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~---~-------------------------~~l~~~l---------------- 411 (597)
...++..+. .++|++|++++|.+++.. + ..+...+
T Consensus 266 ~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 666665543 458999999998766310 0 1121111
Q ss_pred -----hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 412 -----KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 412 -----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
..+++|++|++++|.+++. +...+..+++|++|++++|.++.. ..+...+..+++|++|++++|.++..
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred cccCccCCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCc
Confidence 4567788888888888763 233456668888888888887642 22334456678888888888887652
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcc
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLA 566 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~ 566 (597)
.+. ..+..+++|++|++++|.+++..+..+ .++|++|++++|+++.. +..+.. . .+|+.|+|+
T Consensus 419 ~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~l-------~~~L~~L~L~~N~l~~i-p~~~~~----l--~~L~~L~L~ 481 (562)
T 3a79_B 419 AYD---RTCAWAESILVLNLSSNMLTGSVFRCL-------PPKVKVLDLHNNRIMSI-PKDVTH----L--QALQELNVA 481 (562)
T ss_dssp CSS---CCCCCCTTCCEEECCSSCCCGGGGSSC-------CTTCSEEECCSSCCCCC-CTTTTS----S--CCCSEEECC
T ss_pred cCh---hhhcCcccCCEEECCCCCCCcchhhhh-------cCcCCEEECCCCcCccc-ChhhcC----C--CCCCEEECC
Confidence 111 123445788888888888875432211 14699999999988832 222221 2 359999999
Q ss_pred cCccchhhHHHH
Q 007577 567 NNFLTKFGQSAL 578 (597)
Q Consensus 567 ~N~i~~~~~~~l 578 (597)
+|+|+.+....+
T Consensus 482 ~N~l~~l~~~~~ 493 (562)
T 3a79_B 482 SNQLKSVPDGVF 493 (562)
T ss_dssp SSCCCCCCTTST
T ss_pred CCCCCCCCHHHH
Confidence 999987665533
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-27 Score=269.02 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=154.3
Q ss_pred HhcCCCcEEEcCCCCCCHHHHHHH-HHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 159 KELRAFSSVDMSGRNFGDEGLFFL-AESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l-~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
..+++|++|+|++|..... + +..+..+++|+.|+|++|.++.. .+..+..+++|++|+|++|.+.+.....
T Consensus 45 ~~l~~L~~LdLs~n~~~~~----i~~~~f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLT----IDKEAFRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp SSCCSCSEEEECTTCCCCE----ECTTTTSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred cccccCeEEeCCCCCCccc----cCHHHhcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCcccccC
Confidence 3455566666665532110 1 23345556666666666655432 1233445556666666666554321000
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
..+..+++|++|++++|.++... .+..+.++++|++|++++|.++......+... . .++|+.|++++|.+...
T Consensus 117 --~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l-~-~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 117 --GYFRNLKALTRLDLSKNQIRSLY---LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL-Q-GKTLSFFSLAANSLYSR 189 (844)
T ss_dssp --CCCSSCSSCCEEEEESCCCCCCC---CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH-H-HCSSCCCEECCSBSCCC
T ss_pred --ccccccCCCCEEECCCCcccccc---cchhHhhCCCCCEEECCCCcCCeeCHHHcccc-c-CCccceEECCCCccccc
Confidence 11334566666666666554421 11234445666666666665543211111110 0 04445555544443321
Q ss_pred HHHHHHHHhhcCC------CCCEEEccCCCCChHHHHHHHHhhh-------------------------------c--Cc
Q 007577 318 GANALAKGLEGNK------SLRELHLHGNSIGDEGIRALMSGLS-------------------------------S--RK 358 (597)
Q Consensus 318 ~~~~l~~~l~~~~------~L~~L~Ls~n~i~~~~~~~l~~~l~-------------------------------~--~~ 358 (597)
.. ..+..++ .|+.|++++|.++......+...+. . ..
T Consensus 190 ~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 190 VS----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp CC----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cc----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 11 0111122 2677777776554332221111100 0 01
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++|+.|++++|.+... .+..+..+++|+.|+|++|.++.. .+..+..+++|++|+|++|.++... ...
T Consensus 266 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~ 333 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGELY----SSN 333 (844)
T ss_dssp SCCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCCC----SCS
T ss_pred CCccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCccC----HHH
Confidence 3577777777766652 234455667777777777777653 2234555677777777777765431 223
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
+..+++|++|++++|.++.... ..+..+++|++|++++|.++... .+++|+.|++++|.++
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~i~---------~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCCSCCCS---------SCCSCSEEEEESCCCC
T ss_pred hcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCCCCccc---------CCCCcchhccCCCCcc
Confidence 4455777777777776654321 12344567777777777765431 1355666666665554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-26 Score=248.86 Aligned_cols=314 Identities=16% Similarity=0.105 Sum_probs=180.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+.+++.++++++.++... ...+..+++|+.|++++|.++.... ..+..+++|++|+|++|.++... +.
T Consensus 50 l~~l~~l~l~~~~l~~lp----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 117 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLP----AALLDSFRQVELLNLNDLQIEEIDT----YAFAYAHTIQKLYMGFNAIRYLP----PH 117 (597)
T ss_dssp GCCCSEEEESSCEESEEC----THHHHHCCCCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCCCC----TT
T ss_pred CCCceEEEeeCCCCCCcC----HHHHccCCCCcEEECCCCCCCCCCh----HHhcCCCCCCEEECCCCcCCCCC----HH
Confidence 456677777776655432 1233445677777777776654321 23445666777777777666542 22
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..+++|++|+|++|.++... ...+..+++|++|++++|.++... +..+..+++|++|++++|.++..+
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 118 VFQNVPLLTVLVLERNDLSSLP----RGIFHNTPKLTTLSMSNNNLERIE----DDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCBCC----TTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred HHcCCCCCCEEEeeCCCCCCCC----HHHhccCCCCCEEEeeCCcCCCCC----hhhhhcCCcCcEEECcCCCCCCcC--
Confidence 3344577777777777666431 122345567777777777665321 233455667777777777666542
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+++|+.|++++|.++.. .....|+.|++++|.++.. +. ...++|+.|+|++|.++
T Consensus 188 -----~~~l~~L~~L~l~~n~l~~l----------~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 188 -----LSLIPSLFHANVSYNLLSTL----------AIPIAVEELDASHNSINVV-----RG--PVNVELTILKLQHNNLT 245 (597)
T ss_dssp -----GGGCTTCSEEECCSSCCSEE----------ECCTTCSEEECCSSCCCEE-----EC--SCCSCCCEEECCSSCCC
T ss_pred -----hhhhhhhhhhhcccCccccc----------cCCchhheeeccCCccccc-----cc--ccCCCCCEEECCCCCCC
Confidence 33566677777777766542 1223577777777766552 11 11356777777777666
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGW 480 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 480 (597)
+. ..+..+++|++|+|++|.++... +..+..+++|++|+|++|.++.. ......+++|++|+|++
T Consensus 246 ~~------~~l~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 DT------AWLLNYPGLVEVDLSYNELEKIM----YHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CC------GGGGGCTTCSEEECCSSCCCEEE----SGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCS
T ss_pred CC------hhhccCCCCCEEECCCCccCCCC----HHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCC
Confidence 52 33555667777777777766542 22344556777777777766542 12223356777777777
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHH
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAF 546 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~ 546 (597)
|.++.... .+ ..+++|+.|++++|.++... +.. .++|+.|++++|.+......
T Consensus 311 N~l~~i~~-~~----~~l~~L~~L~L~~N~l~~~~---~~~-----~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 311 NHLLHVER-NQ----PQFDRLENLYLDHNSIVTLK---LST-----HHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp SCCCCCGG-GH----HHHTTCSEEECCSSCCCCCC---CCT-----TCCCSEEECCSSCEEHHHHH
T ss_pred CCCCccCc-cc----ccCCCCCEEECCCCCCCCcC---hhh-----cCCCCEEEeeCCCCCChhHH
Confidence 77664321 12 22367777777777666542 111 15677777777776655433
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-29 Score=281.97 Aligned_cols=246 Identities=20% Similarity=0.196 Sum_probs=125.4
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.+... .+..+..+++|++|++++|.++..... ...+..+++|++|++++|.+....
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~l~~~~--- 139 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFL----HPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIRSLY--- 139 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEE----CTTSSCSCSSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCCCCCCC---
T ss_pred hcCCCCCCEEECCCCcCccc----CHhHccCCcccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCcccccc---
Confidence 34567777777777776643 244566677777777777776532111 012445667777777777765432
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHH----------------------cCC------CccEEEeccCCCChh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK----------------------NNS------ILRVLELNNNMIDYS 289 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~----------------------~~~------~L~~L~Ls~n~i~~~ 289 (597)
....+..+++|++|++++|.++......+..... .+. .|++|++++|.++..
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchh
Confidence 1123445677777777777665432222332210 011 255555555544332
Q ss_pred hHHHHHHH--------------------------------Hhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEE
Q 007577 290 GFTSLAEA--------------------------------LLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335 (597)
Q Consensus 290 ~~~~l~~~--------------------------------l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 335 (597)
....+... +.. .++|++|++++|.+..... ..+..+++|+.|
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L 295 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS----RVFETLKDLKVL 295 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS----CCSSSCCCCCEE
T ss_pred HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh----hhhhcCCCCCEE
Confidence 21111111 000 1456666666665544322 234455666666
Q ss_pred EccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCC
Q 007577 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNR 415 (597)
Q Consensus 336 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 415 (597)
++++|.++...... ...+++|+.|++++|.++.. .+..+..+++|++|++++|.++... ...+..++
T Consensus 296 ~L~~n~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~ 362 (844)
T 3j0a_A 296 NLAYNKINKIADEA-----FYGLDNLQVLNLSYNLLGEL----YSSNFYGLPKVAYIDLQKNHIAIIQ----DQTFKFLE 362 (844)
T ss_dssp EEESCCCCEECTTT-----TTTCSSCCEEEEESCCCSCC----CSCSCSSCTTCCEEECCSCCCCCCC----SSCSCSCC
T ss_pred ECCCCcCCCCChHH-----hcCCCCCCEEECCCCCCCcc----CHHHhcCCCCCCEEECCCCCCCccC----hhhhcCCC
Confidence 66666655421111 12344666666666665541 2334455566666666666554421 11234455
Q ss_pred CccEEEccCCCCCh
Q 007577 416 TITTIDLGGNNIHS 429 (597)
Q Consensus 416 ~L~~L~L~~n~l~~ 429 (597)
+|++|+|++|.++.
T Consensus 363 ~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 363 KLQTLDLRDNALTT 376 (844)
T ss_dssp CCCEEEEETCCSCC
T ss_pred CCCEEECCCCCCCc
Confidence 66666666665543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-27 Score=251.54 Aligned_cols=321 Identities=18% Similarity=0.144 Sum_probs=236.7
Q ss_pred cEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhc
Q 007577 165 SSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVD 244 (597)
Q Consensus 165 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 244 (597)
+.++.+++.+... +..+ .++++.|++++|.++... ...+..+++|++|+|++|.++... +..+..
T Consensus 14 ~~v~c~~~~l~~i-----p~~~--~~~l~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~----~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAV-----PEGI--PTETRLLDLGKNRIKTLN----QDEFASFPHLEELELNENIVSAVE----PGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECTTSCCCEEC----TTTTTT
T ss_pred CEEEeCCCCcCcC-----CCCC--CCCCcEEECCCCccceEC----HhHccCCCCCCEEECCCCccCEeC----hhhhhC
Confidence 3566666665532 2222 368999999999987643 234567899999999999998753 334556
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+++|++|+|++|.++.... ..+..+++|++|++++|+++... +..+..+++|++|++++|.+..... .
T Consensus 79 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~----~ 146 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPL----GVFTGLSNLTKLDISENKIVILL----DYMFQDLYNLKSLEVGDNDLVYISH----R 146 (477)
T ss_dssp CTTCCEEECCSSCCCSCCT----TSSTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEEECCTTCCEECT----T
T ss_pred CccCCEEECCCCcCCccCc----ccccCCCCCCEEECCCCccccCC----hhHccccccCCEEECCCCccceeCh----h
Confidence 7999999999999886422 23456799999999999986432 3445678999999999998876544 3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+.++++|++|++++|.++......+ ..+++|+.|++++|.+... ....+..+++|++|++++|.+.+.
T Consensus 147 ~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~-- 215 (477)
T 2id5_A 147 AFSGLNSLEQLTLEKCNLTSIPTEAL-----SHLHGLIVLRLRHLNINAI----RDYSFKRLYRLKVLEISHWPYLDT-- 215 (477)
T ss_dssp SSTTCTTCCEEEEESCCCSSCCHHHH-----TTCTTCCEEEEESCCCCEE----CTTCSCSCTTCCEEEEECCTTCCE--
T ss_pred hccCCCCCCEEECCCCcCcccChhHh-----cccCCCcEEeCCCCcCcEe----ChhhcccCcccceeeCCCCccccc--
Confidence 46788999999999999876433333 4566899999999988873 234567789999999999865443
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
++.......+|++|++++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|++++|+++
T Consensus 216 --~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 216 --MTPNCLYGLNLTSLSITHCNLTAVPY----LAVRHLVYLRFLNLSYNPISTIEG----SMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp --ECTTTTTTCCCSEEEEESSCCCSCCH----HHHTTCTTCCEEECCSSCCCEECT----TSCTTCTTCCEEECCSSCCS
T ss_pred --cCcccccCccccEEECcCCcccccCH----HHhcCccccCeeECCCCcCCccCh----hhccccccCCEEECCCCccc
Confidence 22223334689999999999986533 335667999999999998876432 23456789999999999988
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
...+. .+..+++|+.|++++|.++......+..+ ++|++|++++|.+..
T Consensus 286 ~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 286 VVEPY----AFRGLNYLRVLNVSGNQLTTLEESVFHSV-----GNLETLILDSNPLAC 334 (477)
T ss_dssp EECTT----TBTTCTTCCEEECCSSCCSCCCGGGBSCG-----GGCCEEECCSSCEEC
T ss_pred eECHH----HhcCcccCCEEECCCCcCceeCHhHcCCC-----cccCEEEccCCCccC
Confidence 76443 34566999999999998887544433333 679999999998763
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-24 Score=229.91 Aligned_cols=302 Identities=17% Similarity=0.145 Sum_probs=223.6
Q ss_pred HhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 159 KELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 159 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
..+++|++|++++|.+.+. + .+..+++|+.|++++|.++... +..+++|++|++++|.++...
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-----~-~l~~l~~L~~L~Ls~n~l~~~~-------~~~l~~L~~L~Ls~N~l~~~~---- 101 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-----T-GIEKLTGLTKLICTSNNITTLD-------LSQNTNLTYLACDSNKLTNLD---- 101 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-----T-TGGGCTTCSEEECCSSCCSCCC-------CTTCTTCSEEECCSSCCSCCC----
T ss_pred hHcCCCCEEEccCCCcccC-----h-hhcccCCCCEEEccCCcCCeEc-------cccCCCCCEEECcCCCCceee----
Confidence 3578999999999998863 2 5778899999999999988641 567889999999999998742
Q ss_pred HHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCC-CCChH
Q 007577 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGN-YGGAL 317 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~ 317 (597)
+..+++|++|++++|.++... +..+++|++|++++|++++. .+..+++|++|++++| .++..
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc
Confidence 556899999999999998741 56779999999999999763 1567899999999999 45443
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN 397 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 397 (597)
.+..+++|++|++++|.++... ...+++|+.|++++|.++.. .+..+++|++|++++|
T Consensus 165 -------~~~~l~~L~~L~ls~n~l~~l~--------l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 165 -------DVTPQTQLTTLDCSFNKITELD--------VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp -------CCTTCTTCCEEECCSSCCCCCC--------CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSS
T ss_pred -------ccccCCcCCEEECCCCccceec--------cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCC
Confidence 2567899999999999988732 14556899999999999883 2678899999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHH------HHHHHHhhCC
Q 007577 398 DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAK------ALSEVLKFHG 471 (597)
Q Consensus 398 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------~l~~~l~~~~ 471 (597)
.+++. + +..+++|++|++++|.++... +..+++|+.|++++|.+....+. .+. ...++
T Consensus 223 ~l~~i-----p--~~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~ 286 (457)
T 3bz5_A 223 KLTEI-----D--VTPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCR 286 (457)
T ss_dssp CCSCC-----C--CTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCT
T ss_pred ccccc-----C--ccccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccc
Confidence 99872 2 667899999999999998742 34456666666655543221100 000 23467
Q ss_pred CcCEEecCCCCCChhHH------HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 472 NINTLKLGWCQIGASGA------EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~------~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
+|+.|++++|.....-+ ..+ -+..+++|++|++++|.++... +..+ ++|+.|++++|++++
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l~---l~~l-----~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTELD---VSHN-----TKLKSLSCVNAHIQD 353 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCCC---CTTC-----TTCSEEECCSSCCCB
T ss_pred cCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCcccccc---cccC-----CcCcEEECCCCCCCC
Confidence 88888888886322100 001 1455678888888888877641 2222 668888888888875
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-25 Score=239.09 Aligned_cols=297 Identities=16% Similarity=0.179 Sum_probs=234.9
Q ss_pred HHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHH
Q 007577 156 EFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGV 235 (597)
Q Consensus 156 ~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 235 (597)
.++..+++|++|+|++|.+.... +..+..+++|+.|+|++|.++... +..+..+++|++|+|++|.++...
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~- 139 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEID----TYAFAYAHTIQKLYMGFNAIRYLP----PHVFQNVPLLTVLVLERNDLSSLP- 139 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCC-
T ss_pred HHHccCCCCcEEECCCCCCCCCC----hHHhcCCCCCCEEECCCCcCCCCC----HHHHcCCCCCCEEEeeCCCCCCCC-
Confidence 45678999999999999997642 346778899999999999987542 234567899999999999998542
Q ss_pred HHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 236 KCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 236 ~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
...+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... +..+++|+.|++++|.++
T Consensus 140 ---~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 140 ---RGIFHNTPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ---TTTTTTCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSCCS
T ss_pred ---HHHhccCCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCccc
Confidence 12345679999999999999875 2334566799999999999997642 446799999999999886
Q ss_pred hHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEcc
Q 007577 316 ALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395 (597)
Q Consensus 316 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 395 (597)
.. ...++|+.|++++|.++.... ...++|+.|++++|.+++. ..+..+++|++|+|+
T Consensus 206 ~l---------~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~L~~n~l~~~------~~l~~l~~L~~L~Ls 262 (597)
T 3oja_B 206 TL---------AIPIAVEELDASHNSINVVRG--------PVNVELTILKLQHNNLTDT------AWLLNYPGLVEVDLS 262 (597)
T ss_dssp EE---------ECCTTCSEEECCSSCCCEEEC--------SCCSCCCEEECCSSCCCCC------GGGGGCTTCSEEECC
T ss_pred cc---------cCCchhheeeccCCccccccc--------ccCCCCCEEECCCCCCCCC------hhhccCCCCCEEECC
Confidence 53 356789999999999875321 1224899999999999983 457889999999999
Q ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCE
Q 007577 396 MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475 (597)
Q Consensus 396 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 475 (597)
+|.+++. .+..+..+++|++|+|++|.++.. ...+..+++|++|+|++|.++.. ...+..+++|++
T Consensus 263 ~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~~l~~L~~ 328 (597)
T 3oja_B 263 YNELEKI----MYHPFVKMQRLERLYISNNRLVAL-----NLYGQPIPTLKVLDLSHNHLLHV-----ERNQPQFDRLEN 328 (597)
T ss_dssp SSCCCEE----ESGGGTTCSSCCEEECTTSCCCEE-----ECSSSCCTTCCEEECCSSCCCCC-----GGGHHHHTTCSE
T ss_pred CCccCCC----CHHHhcCccCCCEEECCCCCCCCC-----CcccccCCCCcEEECCCCCCCcc-----CcccccCCCCCE
Confidence 9999875 345677789999999999999873 33345579999999999998743 222344589999
Q ss_pred EecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 476 LKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 476 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
|++++|.++... +..+++|+.|++++|.+.......+
T Consensus 329 L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 329 LYLDHNSIVTLK-------LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp EECCSSCCCCCC-------CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred EECCCCCCCCcC-------hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 999999997763 4556999999999999987654444
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=200.76 Aligned_cols=211 Identities=20% Similarity=0.283 Sum_probs=139.8
Q ss_pred CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHH
Q 007577 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIAD 409 (597)
Q Consensus 330 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 409 (597)
+.|++|++++|.+++.+...+...+....++|+.|+|++|.+++.+...+...+. +|++|+|++|.+++.+...++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 4566666666666666666666555544446666777766666665554444433 5677777777777777777776
Q ss_pred HHh-cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHH
Q 007577 410 ALK-QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA 488 (597)
Q Consensus 410 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 488 (597)
.+. .+++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.++..+...+..+++|++|+|++|.|++.+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 664 3567777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEE--ccCCCCChH
Q 007577 489 EFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSID--LAFNEIRDD 543 (597)
Q Consensus 489 ~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~--Ls~n~i~~~ 543 (597)
..++..+..+++|++|+|++|.|++.+...+..........|+.+. +..|.+++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 7777777777777777777777777777777664331111266666 666666654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-26 Score=252.46 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=141.1
Q ss_pred hcCCCCCEEEccCCCCChHH--HHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEG--IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
..+++|++|++++|.++..+ ...+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.+.+...
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSD-----FGTTSLKYLDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHH-----HTCSCCCEEECCSCSEEE-----EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccc-----cccCccCEEECCCCcccc-----ccccccccCCCCEEEccCCccccccc
Confidence 35678899999999886532 1112 345689999999998877 23336789999999999998765311
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
...+..+++|++|++++|.++.. ....+..+++|++|++++|.+++.. +...+..+++|++|++++|+++
T Consensus 414 ---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 414 ---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCC
T ss_pred ---hhhhhcCCCCCEEeCcCCccccc----chhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccc
Confidence 12356789999999999998764 2334667799999999999876321 2244567899999999999998
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+..+.. +..+++|++|++++|.+++.....+... ++|++|++++|.++..
T Consensus 484 ~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 484 QLSPTA----FNSLSSLQVLNMASNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCS 533 (570)
T ss_dssp EECTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCC
T ss_pred cCChhh----hhcccCCCEEeCCCCcCCCCCHHHhhcc-----cCCcEEEecCCcccCC
Confidence 765443 4567999999999999988654444433 7899999999998754
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.7e-25 Score=230.12 Aligned_cols=316 Identities=17% Similarity=0.168 Sum_probs=235.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|++++|.++.. .+..+++|+.|++++|.++... +..+++|++|++++|.++...
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~L~~L~L~~N~l~~l~--- 122 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNKLTNLD-------VTPLTKLTYLNCDTNKLTKLD--- 122 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECCSSCCSCCC---
T ss_pred hcccCCCCEEEccCCcCCeE-------ccccCCCCCEEECcCCCCceee-------cCCCCcCCEEECCCCcCCeec---
Confidence 45789999999999999873 1677899999999999988641 567899999999999998642
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+..+++|++|++++|.++.. .+..+++|++|++++|. ++.. .+..+++|++|++++|.++.
T Consensus 123 ----~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 123 ----VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTELDCHLNKKITKL-------DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ----CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEEECTTCSCCCCC-------CCTTCTTCCEEECCSSCCCC
T ss_pred ----CCCCCcCCEEECCCCcccee-------ccccCCcCCEEECCCCCccccc-------ccccCCcCCEEECCCCccce
Confidence 55689999999999999874 15567999999999994 4332 25578999999999999887
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
.+ +..+++|+.|++++|.+++.. ...+++|+.|++++|.++. ++ +..+++|++|++++
T Consensus 185 l~-------l~~l~~L~~L~l~~N~l~~~~--------l~~l~~L~~L~Ls~N~l~~-----ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTNNITKLD--------LNQNIQLTFLDCSSNKLTE-----ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CC-------CTTCTTCCEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSC-----CC--CTTCTTCSEEECCS
T ss_pred ec-------cccCCCCCEEECcCCcCCeec--------cccCCCCCEEECcCCcccc-----cC--ccccCCCCEEEeeC
Confidence 53 568899999999999988742 1456799999999999998 33 67899999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH------HHHHHhhcCCCcCEEECcCCCCCHHH------HHHHH
Q 007577 397 NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS------AIARVLKDNSVITSLDLAYNPIGADG------AKALS 464 (597)
Q Consensus 397 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------~l~~~l~~~~~L~~L~Ls~n~i~~~~------~~~l~ 464 (597)
|.+++.. +..+++|+.|++++|++....+. .++ ...|++|+.|++++|.....- +..+
T Consensus 243 N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L- 312 (457)
T 3bz5_A 243 NPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL- 312 (457)
T ss_dssp SCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe-
Confidence 9998742 23456666555555544321100 011 245689999999999632110 0111
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHH
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDG 544 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~ 544 (597)
.+..+++|++|++++|+++... +..+++|+.|++++|++++. +.|..|++++|.+...+
T Consensus 313 -~l~~~~~L~~L~L~~N~l~~l~-------l~~l~~L~~L~l~~N~l~~l-------------~~L~~L~l~~n~l~g~~ 371 (457)
T 3bz5_A 313 -DLSQNPKLVYLYLNNTELTELD-------VSHNTKLKSLSCVNAHIQDF-------------SSVGKIPALNNNFEAEG 371 (457)
T ss_dssp -CCTTCTTCCEEECTTCCCSCCC-------CTTCTTCSEEECCSSCCCBC-------------TTGGGSSGGGTSEEEEE
T ss_pred -chhhcccCCEEECCCCcccccc-------cccCCcCcEEECCCCCCCCc-------------cccccccccCCcEEecc
Confidence 1456789999999999998751 56789999999999999972 34666677777766431
Q ss_pred HHHHHHHHHhCCCCceeEEEcccCccch
Q 007577 545 AFAIAQALKANEDVAVTSLNLANNFLTK 572 (597)
Q Consensus 545 ~~~l~~~l~~~~~~~L~~L~L~~N~i~~ 572 (597)
. ...+..+++++|.++.
T Consensus 372 -----~------~~~l~~l~l~~N~l~g 388 (457)
T 3bz5_A 372 -----Q------TITMPKETLTNNSLTI 388 (457)
T ss_dssp -----E------EEECCCBCCBTTBEEE
T ss_pred -----e------eeecCccccccCcEEE
Confidence 1 1236667777777663
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-21 Score=193.89 Aligned_cols=211 Identities=26% Similarity=0.323 Sum_probs=179.8
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccC-CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYN-QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.+++++|+|++|.+++.+...++..+... ++|++|+|++|.+++.++..+...+. +|++|+|++|.+++.+...++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHH
Confidence 47799999999999999999999888865 69999999999999998888877665 599999999999999999999
Q ss_pred HHHhc-CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHH
Q 007577 240 DILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (597)
Q Consensus 240 ~~l~~-~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (597)
..+.. +++|++|+|++|.+++.++..++..+..+++|++|+|++|.|++.++..++.++..+++|++|+|++|.+++.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 88864 78999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceee--ccCCCCChh
Q 007577 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLD--IGNNSISAK 374 (597)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~--Ls~n~l~~~ 374 (597)
...++.++..+++|++|++++|.|++.++..+........+.|+.+. +..+.++..
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 98999989899999999999999999988887764433212377777 677766654
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-24 Score=220.49 Aligned_cols=296 Identities=19% Similarity=0.175 Sum_probs=165.6
Q ss_pred CCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH
Q 007577 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL 242 (597)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 242 (597)
+++.++++++.+... +..+ .++++.|++++|.++.... ..+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~l-----p~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-----PKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSC-----CCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCcccc-----CccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 366777777666532 2111 2577778888877764321 23456677888888877776542 2334
Q ss_pred hcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHH
Q 007577 243 VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322 (597)
Q Consensus 243 ~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 322 (597)
..+++|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.+...+. .
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~--~ 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--E 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--C
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccC----HhHhcCCccccEEECCCCcCCccCc--C
Confidence 4567788888877777642 1111 156777777777776432 3345567777777777777654221 1
Q ss_pred HHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcH
Q 007577 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDE 402 (597)
Q Consensus 323 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 402 (597)
...+..+++|++|++++|.++.. ...+ .++|+.|++++|.++.. .+..+..+++|++|++++|.+++.
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l-----~~~~---~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTI-----PQGL---PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSC-----CSSC---CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhhccCCCCcCEEECCCCccccC-----Cccc---cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 13456677777777777776541 1111 14677777777777662 234456667777777777776653
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH--hhCCCcCEEecCC
Q 007577 403 GAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL--KFHGNINTLKLGW 480 (597)
Q Consensus 403 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~L~L~~ 480 (597)
....+..+++|++|++++|.++. ++..+..+++|++|++++|.|+..+...+.... .....++.|++++
T Consensus 232 ----~~~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 232 ----DNGSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp ----CTTTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred ----ChhhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 11234556677777777776663 333455566677777777666543322221110 0123455555555
Q ss_pred CCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 481 CQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 481 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
|.+..... ....+..+++++.+++++|
T Consensus 303 N~~~~~~i--~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 303 NPVQYWEI--QPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSSCGGGS--CGGGGTTCCCGGGEEC---
T ss_pred Cccccccc--CccccccccceeEEEeccc
Confidence 55443211 0122333455555555544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-23 Score=214.52 Aligned_cols=260 Identities=15% Similarity=0.124 Sum_probs=127.8
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
|+.....+++++.++.. +..+ .++|++|++++|.++.... ..+..+++|++|++++|.++... ..
T Consensus 30 C~~~~~c~~~~~~l~~i-----P~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~ 94 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-----PSGL--TEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIE----ED 94 (353)
T ss_dssp ECTTSEEECCSTTCSSC-----CTTC--CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----TT
T ss_pred CCCCeEeeCCCCCcccc-----cccc--cccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccC----Hh
Confidence 55666677777766532 1111 1467777777777765422 12344577777777777766531 22
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCC-CChHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNS-IGDEGI 347 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~ 347 (597)
.+..+++|++|++++|+++... ...+..+++|++|++++|.++..+.. ..+..+++|++|++++|. ++....
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~---~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLS----SSWFKPLSSLTFLNLLGNPYKTLGET---SLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCC----HHHHTTCTTCSEEECTTCCCSSSCSS---CSCTTCTTCCEEEEEESSSCCEECT
T ss_pred hcCCCCCCCEEECCCCcCCcCC----HhHhCCCccCCEEECCCCCCcccCch---hhhccCCCCcEEECCCCccccccCH
Confidence 3444566777777777665321 22344566666666666665533210 124456666666666652 333211
Q ss_pred HHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
..+ ..+++|+.|++++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.+
T Consensus 168 ~~~-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 168 KDF-----AGLTFLEELEIDASDLQSY----EPKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp TTT-----TTCCEEEEEEEEETTCCEE----CTTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEESCBC
T ss_pred HHc-----cCCCCCCEEECCCCCcCcc----CHHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCCCcc
Confidence 111 2334556666666555542 23344455555555555555543211 1122245555555555555
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
+......+.. ...++.++.++++++.+++.+...+...+..+++|++|++++|+++
T Consensus 235 ~~~~~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 235 DTFHFSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred cccccccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 4432221211 1223444444444444444444444444444444444444444443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-25 Score=241.88 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=114.1
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|||++|.|+... ...|..+++|+.|+|++|+|+... ...+..+++|++|+|++|+++.... ..
T Consensus 52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~l~~l~~----~~ 119 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLAL----GA 119 (635)
T ss_dssp TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEECG----GG
T ss_pred cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCcCCCCCH----HH
Confidence 46899999999987642 346778899999999999987542 2345678899999999999886532 34
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|+++.... ..+.++++|++|++++|.++... ++..+..+++|++|++++|.++......
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hcCCCCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcccccccccc
Confidence 5567999999999999886421 23566789999999999886422 2445667899999999999887654433
Q ss_pred HHHHhhcCC-CCCEEEccCCCC
Q 007577 322 LAKGLEGNK-SLRELHLHGNSI 342 (597)
Q Consensus 322 l~~~l~~~~-~L~~L~Ls~n~i 342 (597)
+.. +...+ ....++++.|.+
T Consensus 193 l~~-L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 193 LRV-LHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp GHH-HHTCTTCCCEEECTTCCC
T ss_pred ccc-hhhhhhhhhhhhcccCcc
Confidence 322 22322 233455554443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.3e-21 Score=194.51 Aligned_cols=255 Identities=18% Similarity=0.220 Sum_probs=133.8
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
..++.++++++.+.+.. +...+. +.++.|++++|.+++... .+..+++|++|++++|.++... +...
T Consensus 47 ~~~~~l~l~~~~~~~~~---~~~~~~--~~l~~L~l~~n~l~~~~~-----~~~~~~~L~~L~L~~~~l~~~~---~~~~ 113 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPDV---TGRLLS--QGVIAFRCPRSFMDQPLA-----EHFSPFRVQHMDLSNSVIEVST---LHGI 113 (336)
T ss_dssp TTSSEEECTTCBCCHHH---HHHHHH--TTCSEEECTTCEECSCCC-----SCCCCBCCCEEECTTCEECHHH---HHHH
T ss_pred hhheeeccccccCCHHH---HHhhhh--ccceEEEcCCccccccch-----hhccCCCCCEEEccCCCcCHHH---HHHH
Confidence 44777788777776432 222221 567777777776643211 1234566666666666654332 2234
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEG 403 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~ 403 (597)
+..+++|++|++++|.+++.....+ ..+++|++|++++| .+++.+ ++..+..+++|++|++++| .+++.+
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHH-----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 5566666666666666665433333 23446666666666 455532 3344555666666666666 665543
Q ss_pred HHHHHHHHhcCC-CccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCCC-CCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 404 AEKIADALKQNR-TITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYNP-IGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 404 ~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
+. ..+..++ +|++|++++| .+++..+. ..+..+++|++|++++|. +++..+..+ ..+++|++|+++
T Consensus 186 ~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l----~~l~~L~~L~l~ 255 (336)
T 2ast_B 186 VQ---VAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEF----FQLNYLQHLSLS 255 (336)
T ss_dssp HH---HHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGG----GGCTTCCEEECT
T ss_pred HH---HHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHHH----hCCCCCCEeeCC
Confidence 22 2233455 6666666666 45543322 233445666666666665 454433322 334566666666
Q ss_pred CC-CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 480 WC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 480 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+| .+++.+.. .+..+++|+.|++++| +++.+...+... ++.|++++|.++..
T Consensus 256 ~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~~~~~~~l~~~-------l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 256 RCYDIIPETLL----ELGEIPTLKTLQVFGI-VPDGTLQLLKEA-------LPHLQINCSHFTTI 308 (336)
T ss_dssp TCTTCCGGGGG----GGGGCTTCCEEECTTS-SCTTCHHHHHHH-------STTSEESCCCSCCT
T ss_pred CCCCCCHHHHH----HHhcCCCCCEEeccCc-cCHHHHHHHHhh-------CcceEEecccCccc
Confidence 65 34433321 1233456666666655 555444444332 44444555555543
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-24 Score=220.21 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=125.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (597)
+++.++++++.++.. +..+ .++++.|++++|.++.... ..+..+++|++|++++|.++... +..+
T Consensus 32 ~l~~l~~~~~~l~~l-----p~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKV-----PKDL--PPDTALLDLQNNKITEIKD----GDFKNLKNLHTLILINNKISKIS----PGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSC-----CCSC--CTTCCEEECCSSCCCCBCT----TTTTTCTTCCEEECCSSCCCCBC----TTTT
T ss_pred CCeEEEecCCCcccc-----CccC--CCCCeEEECCCCcCCEeCh----hhhccCCCCCEEECCCCcCCeeC----HHHh
Confidence 677777777766532 1111 2467777777777765422 22344677777777777776531 2334
Q ss_pred HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHH
Q 007577 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (597)
Q Consensus 271 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 350 (597)
..+++|++|++++|+++.- +..+ .++|++|++++|.++.... ..+.++++|++|++++|.+...+..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l-----~~~~--~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 163 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKEL-----PEKM--PKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGIE-- 163 (330)
T ss_dssp TTCTTCCEEECCSSCCSBC-----CSSC--CTTCCEEECCSSCCCBBCH----HHHTTCTTCCEEECCSSCCCGGGBC--
T ss_pred cCCCCCCEEECCCCcCCcc-----Chhh--cccccEEECCCCcccccCH----hHhcCCccccEEECCCCcCCccCcC--
Confidence 4557777777777766421 1111 2566777777666665443 2345666666666666666532110
Q ss_pred HHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
... ...+++|+.|++++|.++. ++..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 164 ~~~-~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 164 NGA-FQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp TTG-GGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE
T ss_pred hhh-ccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCcee
Confidence 011 1233456666666665554 11111 14555555555555542 122334445555555555555442
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
.. ..+..+++|++|++++|.++. +...+..+++|++|++++|.|+.
T Consensus 232 ~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 232 DN----GSLANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CT----TTGGGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCC
T ss_pred Ch----hhccCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCc
Confidence 21 123334555555555554442 11223334455555555554443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=191.54 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=104.2
Q ss_pred CCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC-CCChHHHHHHH
Q 007577 273 NSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN-SIGDEGIRALM 351 (597)
Q Consensus 273 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~ 351 (597)
+++|++|++++|.+++.+ ++..+..+++|++|++++|.+++... ..+..+++|++|++++| .+++.++..+.
T Consensus 92 ~~~L~~L~L~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIV----NTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CBCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHHHH----HHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCCEEEccCCCcCHHH---HHHHHhhCCCCCEEeCcCcccCHHHH----HHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 345555555555544321 23333445555555555555443322 23344555555555555 45554443332
Q ss_pred HhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCC-CCcEEEccCC--CCCcHHHHHHHHHHhcCCCccEEEccCCC-
Q 007577 352 SGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCK-SLLWINLYMN--DIGDEGAEKIADALKQNRTITTIDLGGNN- 426 (597)
Q Consensus 352 ~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~- 426 (597)
. .+++|++|++++| .+++.+ ++..+..++ +|++|++++| .+++.+ +...+..+++|++|++++|.
T Consensus 165 ~----~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 165 S----SCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp H----HCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTT
T ss_pred h----cCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCc
Confidence 2 2235666666665 555432 334445556 6666666666 444432 22233445666666666665
Q ss_pred CChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEE
Q 007577 427 IHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILD 505 (597)
Q Consensus 427 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 505 (597)
+++..... +..+++|++|++++| .+++.++. .+..+++|++|++++| +++.....+.. +++.|+
T Consensus 235 l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~-i~~~~~~~l~~------~l~~L~ 299 (336)
T 2ast_B 235 LKNDCFQE----FFQLNYLQHLSLSRCYDIIPETLL----ELGEIPTLKTLQVFGI-VPDGTLQLLKE------ALPHLQ 299 (336)
T ss_dssp CCGGGGGG----GGGCTTCCEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTS-SCTTCHHHHHH------HSTTSE
T ss_pred CCHHHHHH----HhCCCCCCEeeCCCCCCCCHHHHH----HHhcCCCCCEEeccCc-cCHHHHHHHHh------hCcceE
Confidence 55443322 334466666666666 44444332 2234566666666666 55554444432 244444
Q ss_pred ccCCCCChH
Q 007577 506 LRANGLRDE 514 (597)
Q Consensus 506 l~~n~i~~~ 514 (597)
+++|.+++.
T Consensus 300 l~~n~l~~~ 308 (336)
T 2ast_B 300 INCSHFTTI 308 (336)
T ss_dssp ESCCCSCCT
T ss_pred EecccCccc
Confidence 666666553
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-23 Score=208.81 Aligned_cols=262 Identities=17% Similarity=0.161 Sum_probs=145.5
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
++|++|++++|.++.... ..+..+++|++|++++|.++... ...+..+++|++|++++|.++... ...
T Consensus 52 ~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~----~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIE----EDSFSSLGSLEHLDLSYNYLSNLS----SSW 119 (353)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCSSCC----HHH
T ss_pred ccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccC----HhhcCCCCCCCEEECCCCcCCcCC----HhH
Confidence 356666666665553211 12344556666666666655431 122334566666666666665431 122
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHH--HHhhCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCCCEEEccCCCCChHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAE--ALLENSTIRSLHLNGN-YGGALGANALAKGLEGNKSLRELHLHGNSIGDEG 346 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 346 (597)
+..+++|++|++++|+++. ++. .+..+++|++|++++| .++.... ..+..+++|++|++++|.++...
T Consensus 120 ~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTKIQR----KDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp HTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEEETTCCEEC
T ss_pred hCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCccccccCH----HHccCCCCCCEEECCCCCcCccC
Confidence 3445666666666666542 111 2344566666666666 3443322 23455667777777777665431
Q ss_pred HHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCC
Q 007577 347 IRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNN 426 (597)
Q Consensus 347 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 426 (597)
...+ ..+++|++|++++|.++.. ....+..+++|++|++++|.+++.....+.. ......++.++++++.
T Consensus 191 ~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 191 PKSL-----KSIQNVSHLILHMKQHILL----LEIFVDVTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFTFRNVK 260 (353)
T ss_dssp TTTT-----TTCSEEEEEEEECSCSTTH----HHHHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCB
T ss_pred HHHH-----hccccCCeecCCCCccccc----hhhhhhhcccccEEECCCCcccccccccccc-ccccchhhcccccccc
Confidence 1111 3345677777777776552 2223445677777777777666532222221 2335677788888888
Q ss_pred CChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 427 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
+++.....++..+..+++|++|++++|.++.... ..+..+++|++|++++|.+...
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~----~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD----GIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCH----HHHhcCCCCCEEEeeCCCccCc
Confidence 8887777777777777888888888887763211 1124456677777776665543
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-24 Score=218.75 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=56.7
Q ss_pred CcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHh
Q 007577 164 FSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILV 243 (597)
Q Consensus 164 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 243 (597)
++.++++++.+... +..+ .++|+.|++++|.++... ...+..+++|++|++++|.++... +..+.
T Consensus 35 l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~ 99 (332)
T 2ft3_A 35 LRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELR----KDDFKGLQHLYALVLVNNKISKIH----EKAFS 99 (332)
T ss_dssp TTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----GGGST
T ss_pred CCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccC----HhHhhCCCCCcEEECCCCccCccC----HhHhh
Confidence 55566665554421 1111 245566666666554321 122344555566666555555431 12233
Q ss_pred cCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCC
Q 007577 244 DNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGG 315 (597)
Q Consensus 244 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 315 (597)
.+++|++|++++|.++.. +..+ .++|++|++++|.++... ...+..+++|++|++++|.++
T Consensus 100 ~l~~L~~L~L~~n~l~~l-----~~~~--~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 100 PLRKLQKLYISKNHLVEI-----PPNL--PSSLVELRIHDNRIRKVP----KGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp TCTTCCEEECCSSCCCSC-----CSSC--CTTCCEEECCSSCCCCCC----SGGGSSCSSCCEEECCSCCCB
T ss_pred CcCCCCEEECCCCcCCcc-----Cccc--cccCCEEECCCCccCccC----HhHhCCCccCCEEECCCCccc
Confidence 345555555555555431 1111 134555555555553211 112334455555555555443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-25 Score=221.13 Aligned_cols=293 Identities=15% Similarity=0.121 Sum_probs=182.9
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELL 270 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l 270 (597)
+++.++++++.++.. +..+ .++|++|++++|.+..... ..+..+++|++|++++|.++.. .+..+
T Consensus 34 ~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV-----PKEI--SPDTTLLDLQNNDISELRK----DDFKGLQHLYALVLVNNKISKI----HEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSC-----CSCC--CTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEE----CGGGS
T ss_pred cCCEEECCCCCcccc-----CCCC--CCCCeEEECCCCcCCccCH----hHhhCCCCCcEEECCCCccCcc----CHhHh
Confidence 688999999887632 2111 2579999999998876522 3345678999999999988864 23445
Q ss_pred HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHH
Q 007577 271 KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRAL 350 (597)
Q Consensus 271 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 350 (597)
..+++|++|++++|.++. ++..+ .++|++|++++|.++.... ..+..+++|++|++++|.++..+..
T Consensus 99 ~~l~~L~~L~L~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-- 165 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVE-----IPPNL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGFE-- 165 (332)
T ss_dssp TTCTTCCEEECCSSCCCS-----CCSSC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGSC--
T ss_pred hCcCCCCEEECCCCcCCc-----cCccc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCCC--
Confidence 667889999999998853 22221 2688999999988876543 3466788899999998888642211
Q ss_pred HHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 351 MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 351 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
...+ ... +|+.|++++|.++. ++..+ .++|++|++++|.+++. .+..+..+++|++|++++|.++..
T Consensus 166 ~~~~-~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 166 PGAF-DGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAI----ELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp TTSS-CSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCC----CTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred cccc-cCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCcCCcC
Confidence 1111 223 78888888888776 33222 26788888888877763 223455667788888888877663
Q ss_pred HHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHH--hcCCCccEEEccC
Q 007577 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADML--RYNNTISILDLRA 508 (597)
Q Consensus 431 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l--~~~~~L~~L~l~~ 508 (597)
.. ..+..+++|++|++++|.++. +...+..+++|++|++++|.++..+...+.... ...+.|+.|++++
T Consensus 233 ~~----~~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 233 EN----GSLSFLPTLRELHLDNNKLSR-----VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CT----TGGGGCTTCCEEECCSSCCCB-----CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred Ch----hHhhCCCCCCEEECCCCcCee-----cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 22 234556777777777777763 223345567777777777777655443332210 0124566666666
Q ss_pred CCCChH--HHHHHHHHHhhcCccccEEEccCC
Q 007577 509 NGLRDE--GAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 509 n~i~~~--~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
|.+... ....+.. .+.|+.+++++|
T Consensus 304 N~~~~~~~~~~~~~~-----l~~L~~l~l~~n 330 (332)
T 2ft3_A 304 NPVPYWEVQPATFRC-----VTDRLAIQFGNY 330 (332)
T ss_dssp SSSCGGGSCGGGGTT-----BCCSTTEEC---
T ss_pred CcccccccCcccccc-----cchhhhhhcccc
Confidence 665521 1111111 155666666665
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7e-23 Score=215.71 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=28.5
Q ss_pred CcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
+|++|++++|+++.... .+++|++|++++|.++.... . .++|++|++++|.++.
T Consensus 318 ~L~~L~Ls~N~l~~lp~--------~~~~L~~L~L~~N~l~~lp~-----~----l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNKLIELPA--------LPPRLERLIASFNHLAEVPE-----L----PQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCCCC-----C----CTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCccccccc--------cCCcCCEEECCCCccccccc-----h----hhhccEEECCCCCCCc
Confidence 56666666666543211 13566666666666553211 0 1456666666666654
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-21 Score=202.77 Aligned_cols=315 Identities=16% Similarity=0.187 Sum_probs=187.9
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.++|++|++++|.+... +. ..++|++|++++|.++.. + .+..+++|++|++++|+++.. +.
T Consensus 110 ~~~L~~L~l~~n~l~~l-----~~---~~~~L~~L~L~~n~l~~l-----p-~~~~l~~L~~L~l~~N~l~~l-----p~ 170 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-----SD---LPPLLEYLGVSNNQLEKL-----P-ELQNSSFLKIIDVDNNSLKKL-----PD 170 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CS---CCTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSCC-----CC
T ss_pred cCCCcEEECCCCccCcc-----cC---CCCCCCEEECcCCCCCCC-----c-ccCCCCCCCEEECCCCcCccc-----CC
Confidence 36788888888877641 11 125888888888887642 2 256778888888888887642 11
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
. ..+|++|++++|.++.. + .+..+++|++|++++|+++.- +. ..++|++|++++|.++..+
T Consensus 171 ~---~~~L~~L~L~~n~l~~l-----~-~~~~l~~L~~L~l~~N~l~~l-----~~---~~~~L~~L~l~~n~l~~lp-- 231 (454)
T 1jl5_A 171 L---PPSLEFIAAGNNQLEEL-----P-ELQNLPFLTAIYADNNSLKKL-----PD---LPLSLESIVAGNNILEELP-- 231 (454)
T ss_dssp C---CTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSSCC--
T ss_pred C---cccccEEECcCCcCCcC-----c-cccCCCCCCEEECCCCcCCcC-----CC---CcCcccEEECcCCcCCccc--
Confidence 1 35788888888888763 2 256678888888888887531 11 1358889999988877443
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.+..+++|++|++++|.++.. . ...++|+.|++++|.++. ++. ..++|++|++++|.++
T Consensus 232 ----~~~~l~~L~~L~l~~N~l~~l-----~----~~~~~L~~L~l~~N~l~~-----l~~---~~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 232 ----ELQNLPFLTTIYADNNLLKTL-----P----DLPPSLEALNVRDNYLTD-----LPE---LPQSLTFLDVSENIFS 290 (454)
T ss_dssp ----CCTTCTTCCEEECCSSCCSSC-----C----SCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCS
T ss_pred ----ccCCCCCCCEEECCCCcCCcc-----c----ccccccCEEECCCCcccc-----cCc---ccCcCCEEECcCCccC
Confidence 256788899999999987652 1 122479999999998876 222 2478999999999887
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecC
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLG 479 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 479 (597)
+. .. -.++|++|++++|.++. +... ++|++|++++|+++... . .+++|++|+++
T Consensus 291 ~l-----~~---~~~~L~~L~l~~N~l~~---------i~~~~~~L~~L~Ls~N~l~~lp-----~---~~~~L~~L~L~ 345 (454)
T 1jl5_A 291 GL-----SE---LPPNLYYLNASSNEIRS---------LCDLPPSLEELNVSNNKLIELP-----A---LPPRLERLIAS 345 (454)
T ss_dssp EE-----SC---CCTTCCEEECCSSCCSE---------ECCCCTTCCEEECCSSCCSCCC-----C---CCTTCCEEECC
T ss_pred cc-----cC---cCCcCCEEECcCCcCCc---------ccCCcCcCCEEECCCCcccccc-----c---cCCcCCEEECC
Confidence 62 11 12689999999999886 2233 58999999999887521 1 24799999999
Q ss_pred CCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh--HHHHHHHHH--------HhhcCccccEEEccCCCCChHHHHHHH
Q 007577 480 WCQIGASGAEFVADMLRYNNTISILDLRANGLRD--EGAKCLAQS--------FKVVNEALTSIDLAFNEIRDDGAFAIA 549 (597)
Q Consensus 480 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~--~~~~~l~~~--------l~~~n~~L~~L~Ls~n~i~~~~~~~l~ 549 (597)
+|+++.... .+++|++|++++|.++. ..+..+... +....++|+.|++++|.++..+ .+-
T Consensus 346 ~N~l~~lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~--~iP 415 (454)
T 1jl5_A 346 FNHLAEVPE--------LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP--DIP 415 (454)
T ss_dssp SSCCSCCCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred CCccccccc--------hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc--cch
Confidence 999875432 25899999999998876 211111000 0000145888888888877521 121
Q ss_pred HHHHhCCCCceeEEEcccCccchhhHHH
Q 007577 550 QALKANEDVAVTSLNLANNFLTKFGQSA 577 (597)
Q Consensus 550 ~~l~~~~~~~L~~L~L~~N~i~~~~~~~ 577 (597)
. +++.|.+.+|.+.......
T Consensus 416 ~--------sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 416 E--------SVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ----------------------------
T ss_pred h--------hHhheeCcCcccCCccccC
Confidence 1 2677777777776554433
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-20 Score=205.36 Aligned_cols=285 Identities=16% Similarity=0.141 Sum_probs=205.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
.++++|++++|.++. ++..+. ++|+.|++++|.|+.. +. .+++|++|+|++|+++... .
T Consensus 40 ~~l~~L~ls~n~L~~-----lp~~l~--~~L~~L~L~~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~lp-----~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-----LPDCLP--AHITTLVIPDNNLTSL-----PA---LPPELRTLEVSGNQLTSLP-----V- 98 (622)
T ss_dssp HCCCEEECCSSCCSC-----CCSCCC--TTCSEEEECSCCCSCC-----CC---CCTTCCEEEECSCCCSCCC-----C-
T ss_pred CCCcEEEecCCCcCc-----cChhhC--CCCcEEEecCCCCCCC-----CC---cCCCCCEEEcCCCcCCcCC-----C-
Confidence 569999999998874 333332 7899999999998742 21 4578999999999987532 2
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
.+++|++|++++|.++.. +. ..++|++|++++|+++. ++. .+++|++|++++|.++..+.
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l~~-- 158 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTS-----LPV---LPPGLQELSVSDNQLASLPA-- 158 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCc-----CCC---CCCCCCEEECcCCcCCCcCC--
Confidence 468999999999998863 22 35789999999998864 222 24789999999998875431
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
..++|+.|++++|.++... ...++|+.|++++|.++. ++. ..++|+.|++++|.++.
T Consensus 159 ------~~~~L~~L~L~~N~l~~l~---------~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 159 ------LPSELCKLWAYNNQLTSLP---------MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp ------CCTTCCEEECCSSCCSCCC---------CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred ------ccCCCCEEECCCCCCCCCc---------ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 3568999999999887621 234589999999998876 322 34789999999998875
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
++. ..++|++|++++|.|+... ..+++|++|++++|.|+.... .+++|++|++++|
T Consensus 216 -----l~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 -----LPA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp -----CCC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred -----cCC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 221 2478999999999888622 345889999999998874321 4578999999999
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhh--cCccccEEEccCCC
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV--VNEALTSIDLAFNE 539 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~--~n~~L~~L~Ls~n~ 539 (597)
+|+.. ...+..+++|+.|++++|.+.+..+..+...... ....+..++++++.
T Consensus 272 ~L~~l-----p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~ 326 (622)
T 3g06_A 272 QLTRL-----PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326 (622)
T ss_dssp CCCSC-----CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC-
T ss_pred CCCcC-----CHHHhhccccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCc
Confidence 88743 2335667899999999999988877777655321 11234455555543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-20 Score=204.68 Aligned_cols=285 Identities=15% Similarity=0.106 Sum_probs=203.2
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
.+++.|++++|.++.. +..+. ++|++|++++|.++... . .+++|++|+|++|+++.. +.
T Consensus 40 ~~l~~L~ls~n~L~~l-----p~~l~--~~L~~L~L~~N~l~~lp-----~---~l~~L~~L~Ls~N~l~~l-----p~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTL-----PDCLP--AHITTLVIPDNNLTSLP-----A---LPPELRTLEVSGNQLTSL-----PV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCC-----CSCCC--TTCSEEEECSCCCSCCC-----C---CCTTCCEEEECSCCCSCC-----CC-
T ss_pred CCCcEEEecCCCcCcc-----ChhhC--CCCcEEEecCCCCCCCC-----C---cCCCCCEEEcCCCcCCcC-----CC-
Confidence 3688999999987632 22222 67999999999887532 2 358899999999988763 22
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
.+++|++|++++|.++.- +. .+++|+.|++++|.++..+. .+++|++|++++|.++..
T Consensus 99 --~l~~L~~L~Ls~N~l~~l-----~~---~l~~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~~l---- 156 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHL-----PA---LPSGLCKLWIFGNQLTSLPV--------LPPGLQELSVSDNQLASL---- 156 (622)
T ss_dssp --CCTTCCEEEECSCCCCCC-----CC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCC----
T ss_pred --CCCCCCEEECcCCcCCCC-----CC---CCCCcCEEECCCCCCCcCCC--------CCCCCCEEECcCCcCCCc----
Confidence 458899999999988642 21 46789999999998876432 347899999999988652
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
. ....+|+.|++++|.++. ++ ..+++|+.|++++|.++. ++. ..++|+.|++++|.++.
T Consensus 157 -~----~~~~~L~~L~L~~N~l~~-----l~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L~L~~N~l~~ 215 (622)
T 3g06_A 157 -P----ALPSELCKLWAYNNQLTS-----LP---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS 215 (622)
T ss_dssp -C----CCCTTCCEEECCSSCCSC-----CC---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred -C----CccCCCCEEECCCCCCCC-----Cc---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEEECcCCcccc
Confidence 1 123479999999998887 33 456889999999998875 221 24789999999998876
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 430 KGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
. .. ..++|++|++++|.++... ..+++|++|++++|.|+.... .+++|+.|++++|
T Consensus 216 l-----~~---~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 216 L-----PA---LPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRN 271 (622)
T ss_dssp C-----CC---CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSS
T ss_pred c-----CC---CCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCC
Confidence 2 11 2378999999999887532 345789999999998875432 3578999999999
Q ss_pred CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCC-CceeEEEcccC
Q 007577 510 GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANED-VAVTSLNLANN 568 (597)
Q Consensus 510 ~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~-~~L~~L~L~~N 568 (597)
.|+.. +..+..+ ++|+.|+|++|.++...+..+......+.. ..+..++++++
T Consensus 272 ~L~~l-p~~l~~l-----~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~ 325 (622)
T 3g06_A 272 QLTRL-PESLIHL-----SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325 (622)
T ss_dssp CCCSC-CGGGGGS-----CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC
T ss_pred CCCcC-CHHHhhc-----cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCC
Confidence 88853 2223332 779999999999998888877765443211 12455555543
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-22 Score=197.94 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=82.2
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|++|++++|.++.. ...++|++|++++|.+++... ...++|+.|++++|.++.. .
T Consensus 78 ~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~----~ 136 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRVSC--------SRGQGKKNIYLANNKITML----R 136 (317)
T ss_dssp TCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSG----G
T ss_pred hcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCcCc--------cccCCCCEEECCCCCCCCc----c
Confidence 344555555555544321 123455555555555543211 1223455555555555541 1
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHH
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADG 459 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 459 (597)
+..+..+++|++|++++|.+++.....+ ...+++|++|++++|.|+... ....+++|++|++++|.++...
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~l~~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAEL---AASSDTLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGG---GGGTTTCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCEEC
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHH---hhccCcCCEEECCCCcCcccc------cccccccCCEEECCCCcCCcch
Confidence 2234445556666666665554311111 113455666666666555421 1112455666666666555321
Q ss_pred HHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 460 AKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 460 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
. .+..+++|++|++++|.++... ..+..+++|+.|++++|.+.
T Consensus 208 ~-----~~~~l~~L~~L~L~~N~l~~l~-----~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 208 P-----EFQSAAGVTWISLRNNKLVLIE-----KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp G-----GGGGGTTCSEEECTTSCCCEEC-----TTCCCCTTCCEEECTTCCCB
T ss_pred h-----hhcccCcccEEECcCCcccchh-----hHhhcCCCCCEEEccCCCcc
Confidence 1 1333456666666666655321 12344456666666666665
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-22 Score=198.54 Aligned_cols=14 Identities=43% Similarity=0.453 Sum_probs=5.9
Q ss_pred CCCccEEEccCCCC
Q 007577 217 NIALKTLNLSGNPI 230 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l 230 (597)
+++|++|++++|.+
T Consensus 57 l~~L~~L~Ls~n~l 70 (317)
T 3o53_A 57 FTKLELLNLSSNVL 70 (317)
T ss_dssp CTTCCEEECTTSCC
T ss_pred CCcCCEEECCCCcC
Confidence 34444444444444
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-23 Score=208.59 Aligned_cols=250 Identities=14% Similarity=0.186 Sum_probs=119.8
Q ss_pred CCCcEEEcCCCCCCH--HHHHHHHHHhccCCCccEEEecc-CCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 162 RAFSSVDMSGRNFGD--EGLFFLAESLGYNQTAEEVSFAA-NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~--~~~~~l~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
.++++|+|++|.+.. . ++..+..+++|+.|++++ |.++.. ++..+..+++|++|++++|.+... +
T Consensus 50 ~~l~~L~L~~~~l~~~~~----~~~~l~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP----IPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGA----I 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEE----CCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEE----C
T ss_pred ceEEEEECCCCCccCCcc----cChhHhCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCCc----C
Confidence 457777777776653 2 334556666666666663 544321 223344556666666666665432 2
Q ss_pred HHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHH
Q 007577 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318 (597)
Q Consensus 239 ~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 318 (597)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|++++. ++..+..++
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~---------------- 173 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFS---------------- 173 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCC----------------
T ss_pred CHHHhCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhh----------------
Confidence 23334455566666665555432 222333445555555555555321 122233333
Q ss_pred HHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC
Q 007577 319 ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (597)
Q Consensus 319 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (597)
+.|++|++++|.++.... ..+ ... .|+.|++++|.++.. ++..+..+++|++|+|++|.
T Consensus 174 -----------~~L~~L~L~~N~l~~~~~----~~~-~~l-~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 174 -----------KLFTSMTISRNRLTGKIP----PTF-ANL-NLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp -----------TTCCEEECCSSEEEEECC----GGG-GGC-CCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSE
T ss_pred -----------hcCcEEECcCCeeeccCC----hHH-hCC-cccEEECcCCcccCc----CCHHHhcCCCCCEEECCCCc
Confidence 045555555554432111 111 111 255555555554431 23334455555566665555
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
++.. ++ .+..+++|++|++++|.|+.. ++..+..+++|++|++++|++++... .. ..+++|+.|++
T Consensus 233 l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ip----~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 233 LAFD----LG-KVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFNNLCGEIP----QG-GNLQRFDVSAY 298 (313)
T ss_dssp ECCB----GG-GCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSSEEEEECC----CS-TTGGGSCGGGT
T ss_pred eeee----cC-cccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCCcccccCC----CC-ccccccChHHh
Confidence 5432 11 133445566666666655532 22334445666666666665543211 11 23355666666
Q ss_pred CCCC
Q 007577 479 GWCQ 482 (597)
Q Consensus 479 ~~n~ 482 (597)
++|.
T Consensus 299 ~~N~ 302 (313)
T 1ogq_A 299 ANNK 302 (313)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6665
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.2e-23 Score=206.25 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=107.2
Q ss_pred hcCCCcCEEEecC-CCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 243 VDNAGVERLQLSS-VDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 243 ~~~~~L~~L~Ls~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
..+++|++|++++ |.++.. ++..+.++++|++|++++|.++. .++..+..+++|++|++++|.++...
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~--- 141 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIKTLVTLDFSYNALSGTL--- 141 (313)
T ss_dssp GGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCTTCCEEECCSSEEESCC---
T ss_pred hCCCCCCeeeCCCCCccccc----CChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCCCCCEEeCCCCccCCcC---
Confidence 3345555555552 444322 22233444566666666665542 12333445566666666666544211
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
+..+..+++|++|++++|.+++. ++..+....++|+.|++++|.++.. ++..+..++ |++|++++|.+++
T Consensus 142 -p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 142 -PPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp -CGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEE
T ss_pred -ChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccC
Confidence 13355677777777777776532 1222222222677777777766642 344455554 7777777776654
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
. .+..+..+++|++|++++|.++... ..+..+++|++|++++|.+++. +...+..+++|++|++++|
T Consensus 212 ~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 212 D----ASVLFGSDKNTQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRNNRIYGT----LPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp C----CGGGCCTTSCCSEEECCSSEECCBG-----GGCCCCTTCCEEECCSSCCEEC----CCGGGGGCTTCCEEECCSS
T ss_pred c----CCHHHhcCCCCCEEECCCCceeeec-----CcccccCCCCEEECcCCcccCc----CChHHhcCcCCCEEECcCC
Confidence 3 3334445666666666666665321 1133445666666666655432 1122334455555555555
Q ss_pred CCC
Q 007577 482 QIG 484 (597)
Q Consensus 482 ~i~ 484 (597)
+++
T Consensus 279 ~l~ 281 (313)
T 1ogq_A 279 NLC 281 (313)
T ss_dssp EEE
T ss_pred ccc
Confidence 544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-22 Score=217.01 Aligned_cols=372 Identities=17% Similarity=0.151 Sum_probs=219.1
Q ss_pred HHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 158 AKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 158 ~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
+..+++|++|+|++|.|+... ..+|..+++|++|+|++|+|+... ...+..+++|++|++++|+++....
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~l~~l~----~~~f~~L~~L~~L~Ls~N~l~~l~~-- 141 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNPIQSLA----LGAFSGLSSLQKLVAVETNLASLEN-- 141 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCCCCEEC----GGGGTTCTTCCEEECTTSCCCCSTT--
T ss_pred HhCCCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCcCCCCC----HHHhcCCCCCCEEECCCCcCCCCCh--
Confidence 456889999999999887532 345778899999999999987542 2345678899999999998876421
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCC-CccEEEcCCCCCCh
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENS-TIRSLHLNGNYGGA 316 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~ 316 (597)
..+..+++|++|++++|.++... ++..+..+++|++|++++|+++......+. .+.+.. ....++++.|.+..
T Consensus 142 --~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 142 --FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp --CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCCCE
T ss_pred --hhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcccc
Confidence 23456799999999999886531 234456678999999999988653322221 122221 22344444443321
Q ss_pred HH--------------------HHHHHHHhhcCCC---------------------------------------------
Q 007577 317 LG--------------------ANALAKGLEGNKS--------------------------------------------- 331 (597)
Q Consensus 317 ~~--------------------~~~l~~~l~~~~~--------------------------------------------- 331 (597)
.. .......+..+..
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 11 1111122222222
Q ss_pred ----------------------------------CCEEEccCCCCChHHHHHHHH--------------hhhcCccccce
Q 007577 332 ----------------------------------LRELHLHGNSIGDEGIRALMS--------------GLSSRKGKLAV 363 (597)
Q Consensus 332 ----------------------------------L~~L~Ls~n~i~~~~~~~l~~--------------~l~~~~~~L~~ 363 (597)
++.|++.+|.+.......+.. .....+++|+.
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~ 375 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 375 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCE
T ss_pred cchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccccc
Confidence 222222222211100000000 00001234555
Q ss_pred eeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC-----------------------CCcHHHHHHHHHHhcCCCccEE
Q 007577 364 LDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND-----------------------IGDEGAEKIADALKQNRTITTI 420 (597)
Q Consensus 364 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----------------------l~~~~~~~l~~~l~~~~~L~~L 420 (597)
|++++|.+...+. .+..+..+.+|++|++..|. ..... -...+..++.++.+
T Consensus 376 L~ls~n~l~~~~~--~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~---~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 376 LDLSRNGLSFKGC--CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS---EFSVFLSLRNLIYL 450 (635)
T ss_dssp EECCSSCCBEEEE--CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT---SSCTTTTCTTCCEE
T ss_pred chhhccccccccc--cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc---cccccccccccccc
Confidence 5555554432110 11122233334444333321 11100 01124456788999
Q ss_pred EccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCC
Q 007577 421 DLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500 (597)
Q Consensus 421 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 500 (597)
++++|.+.... ...+..++.|+.|++++|.+.... ....+..+++|++|+|++|+++...+.. +..+++
T Consensus 451 ~ls~n~l~~~~----~~~~~~~~~L~~L~Ls~N~~~~~~---~~~~~~~l~~L~~L~Ls~N~L~~l~~~~----f~~l~~ 519 (635)
T 4g8a_A 451 DISHTHTRVAF----NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTA----FNSLSS 519 (635)
T ss_dssp ECTTSCCEECC----TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTT----TTTCTT
T ss_pred ccccccccccc----ccccccchhhhhhhhhhccccccc---CchhhhhccccCEEECCCCccCCcChHH----HcCCCC
Confidence 99999876542 223455689999999999643211 1234456789999999999998765433 456699
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 501 ISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 501 L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
|++|+|++|+|+......+... ++|+.|||++|+|+...+..+.... .+|+.|+|++|++.
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~l~~l~-----~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCL-----NSLQVLDYSLNHIMTSKKQELQHFP-----SSLAFLNLTQNDFA 580 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTC-----TTCCEEECTTSCCCBCCSSCTTCCC-----TTCCEEECTTCCBC
T ss_pred CCEEECCCCcCCCCChhHHhCC-----CCCCEEECCCCcCCCCCHHHHHhhh-----CcCCEEEeeCCCCc
Confidence 9999999999887654444433 7799999999999876555443221 24999999999886
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-20 Score=189.04 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHH--hcCCCcCEEEecCCCCChHHHHHHHHHHH-cCCCccEEEeccCCCChhhHH
Q 007577 216 SNIALKTLNLSGNPIGDEGVKCLCDIL--VDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFT 292 (597)
Q Consensus 216 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~ 292 (597)
.+++|++|++++|.++.. ++..+ ..+++|++|++++|.++.. ...+..... ..++|++|++++|+++...
T Consensus 93 ~l~~L~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-- 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT----APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS-- 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC----CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC--
T ss_pred CcCCccEEEccCCcccch----hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch--
Confidence 345566666666655432 11111 3345566666666655543 111211100 0145555555555553211
Q ss_pred HHHHHHhhCCCccEEEcCCCCC
Q 007577 293 SLAEALLENSTIRSLHLNGNYG 314 (597)
Q Consensus 293 ~l~~~l~~~~~L~~L~L~~n~i 314 (597)
+..+..+++|++|++++|.+
T Consensus 166 --~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 166 --CEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp --TTTCCCCSSCCEEECCSCTT
T ss_pred --HHHhccCCCCCEEECCCCCc
Confidence 12233344455555555443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-20 Score=187.46 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHH-HhhhcCccccceeeccCCCCChhHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM-SGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~-~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
+++|++|++++|.++.... ..+..+++|++|++++|.+..... +. ......+++|++|++++|.++.... ..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~ 216 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----EQVRAFPALTSLDLSDNPGLGERG--LMAALCPHKFPAIQNLALRNTGMETPTG-VC 216 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----TSCCCCTTCCEEECCSCTTCHHHH--HHTTSCTTSSCCCCSCBCCSSCCCCHHH-HH
T ss_pred ccCCCEEEeeCCCcchhhH----HHhccCCCCCEEECCCCCCccchh--hhHHHhhhcCCCCCEEECCCCCCCchHH-HH
Confidence 4444444444444433221 223445555555555555433211 11 0111233456666666666553111 01
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcC---CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN---RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
...+..+++|++|+|++|.+++. .+..+..+ ++|++|+|++|+|+. ++..+ .++|++|+|++|+++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSCCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCCcCC
Confidence 11234556666666666665542 11112222 466666666666653 11111 156666666666665
Q ss_pred HHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 457 ADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
... .+..+++|++|++++|.+++
T Consensus 286 ~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 286 RAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCC------CTTSCCCCSCEECSSTTTSC
T ss_pred CCc------hhhhCCCccEEECcCCCCCC
Confidence 421 12344666666666666654
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-21 Score=194.10 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH-H---HHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC-L---CDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~-l---~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
.++|+.|++++|.+ .. ...+... |+.|++++|.+....... + .-....+++|++|++++|.+++.
T Consensus 42 ~~~L~~l~l~~n~l-~~-p~~~~~~------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 110 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-AD-LGQFTDI------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--- 110 (312)
T ss_dssp EEECTTHHHHCCTT-CC-CHHHHHH------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC---
T ss_pred CCCceeEeeccccc-cc-HHHHHHH------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch---
Confidence 34666666777766 11 2222222 555566665553211000 0 01112357888888888877643
Q ss_pred HHHHHH--HcCCCccEEEeccCCCChhhHHHHHHHHhh--CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC
Q 007577 265 AIAELL--KNNSILRVLELNNNMIDYSGFTSLAEALLE--NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340 (597)
Q Consensus 265 ~l~~~l--~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 340 (597)
++..+ ..+++|++|++++|++++. ...+. .+.. +++|++|++++|.++.... ..+..+++|++|++++|
T Consensus 111 -~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N 183 (312)
T 1wwl_A 111 -APPPLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSC----EQVRVFPALSTLDLSDN 183 (312)
T ss_dssp -CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCT----TTCCCCSSCCEEECCSC
T ss_pred -hHHHHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchH----HHhccCCCCCEEECCCC
Confidence 22222 4567788888888877653 11111 1111 2677777777777665443 23556667777777777
Q ss_pred CCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 341 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
.+.+.. ..........+++|+.|++++|.++..+. .....+..+++|++|++++|.+++
T Consensus 184 ~l~~~~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 184 PELGER-GLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCHHH-HHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CcCcch-HHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCc
Confidence 654421 00111111334466666666666653111 111233455566666666665554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-21 Score=191.13 Aligned_cols=248 Identities=14% Similarity=0.153 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHhhh--CCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEE
Q 007577 202 ITAAGIKAFDGVLQS--NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279 (597)
Q Consensus 202 l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L 279 (597)
........+...+.. .++++.|++++|.++. ++..+..+++|++|++++|.++. ++..+..+++|++|
T Consensus 63 ~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L 132 (328)
T 4fcg_A 63 RTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETL 132 (328)
T ss_dssp SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEE
T ss_pred cCCcchhhhHHHHhcccccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEE
Confidence 333334444433332 3577788888877763 33444456777777777777663 33444555777777
Q ss_pred EeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCcc
Q 007577 280 ELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKG 359 (597)
Q Consensus 280 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 359 (597)
++++|.++ .++..+..+++|++|++++|.+..... . .+....+.+. ...++
T Consensus 133 ~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p----~------~~~~~~~~~~--------------~~~l~ 183 (328)
T 4fcg_A 133 TLARNPLR-----ALPASIASLNRLRELSIRACPELTELP----E------PLASTDASGE--------------HQGLV 183 (328)
T ss_dssp EEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCCCCC----S------CSEEEC-CCC--------------EEEST
T ss_pred ECCCCccc-----cCcHHHhcCcCCCEEECCCCCCccccC----h------hHhhccchhh--------------hccCC
Confidence 77777664 224445556666666666643221100 0 0111000000 01233
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.++. ++..+..+++|++|+|++|.++. ++..+..+++|++|++++|++... ++..+
T Consensus 184 ~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~ 249 (328)
T 4fcg_A 184 NLQSLRLEWTGIRS-----LPASIANLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIF 249 (328)
T ss_dssp TCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCT
T ss_pred CCCEEECcCCCcCc-----chHhhcCCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHh
Confidence 55555555555553 33445555555566655555553 222344455555555555544432 22223
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
..+++|++|++++|.+... +...+..+++|++|++++|.+....+ ..+..+++|+.+++..+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~iP----~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKLDLRGCVNLSRLP----SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCEEECTTCTTCCCCC----GGGGGSCTTCEEECCGGG
T ss_pred cCCCCCCEEECCCCCchhh----cchhhhcCCCCCEEeCCCCCchhhcc----HHHhhccCceEEeCCHHH
Confidence 4445555555555544322 11223344555555555555433322 223334555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=152.01 Aligned_cols=136 Identities=24% Similarity=0.237 Sum_probs=66.9
Q ss_pred HHHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 379 VAEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
+...+..+++|++|+|++| .++++++..++.++..+++|++|+|++|.|++.+...++..+..++.|++|+|++|.|++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344444455555555555 555555555555554444555555555555555555555544444445555555555555
Q ss_pred HHHHHHHHHHhhCCCcCEEec--CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 458 DGAKALSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
.+...+.+.+..+++|++|+| ++|.|++.+...++..+..+++|++|++++|.|++.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 544444444444444444444 444444444444444444444444444444444443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-22 Score=198.65 Aligned_cols=265 Identities=15% Similarity=0.144 Sum_probs=163.1
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
-+.++.+++.++.. +.. -.++|++|++++|.++... ...+..+++|++|++++|.++..+.. +..+.
T Consensus 9 ~~~l~c~~~~l~~i-----p~~--~~~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~ 75 (306)
T 2z66_A 9 GTEIRCNSKGLTSV-----PTG--IPSSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLSFKGCC--SQSDF 75 (306)
T ss_dssp TTEEECCSSCCSSC-----CSC--CCTTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCEEEEE--EHHHH
T ss_pred CCEEEcCCCCcccC-----CCC--CCCCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccCcccCc--ccccc
Confidence 35778887777653 221 1257888888888876321 22345678888888888887754210 01234
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKI 407 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 407 (597)
.+++|++|++++|.+... ...+ ..+++|+.|++++|.++.... ...+..+++|++|++++|.++.. .
T Consensus 76 ~~~~L~~L~Ls~n~i~~l-----~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~ 142 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITM-----SSNF-LGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----F 142 (306)
T ss_dssp SCSCCCEEECCSCSEEEE-----EEEE-ETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----S
T ss_pred cccccCEEECCCCccccC-----hhhc-CCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----c
Confidence 678888888888877541 1122 345678888888887765210 12456778888888888877653 2
Q ss_pred HHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhH
Q 007577 408 ADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASG 487 (597)
Q Consensus 408 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 487 (597)
...+..+++|++|++++|.+++.. +...+..+++|++|++++|.+++... ..+..+++|++|++++|.++...
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSP----TAFNSLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCSBCC
T ss_pred hhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCH----HHhcCCCCCCEEECCCCccCccC
Confidence 334556778888888888765411 22334556778888888887765422 23345577888888888776543
Q ss_pred HHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh-HHHHHHHHHHH
Q 007577 488 AEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD-DGAFAIAQALK 553 (597)
Q Consensus 488 ~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~-~~~~~l~~~l~ 553 (597)
... +..+++|+.|++++|.+++.....+... .++|+.|++++|.++. .....+.++++
T Consensus 216 ~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~~----~~~L~~L~L~~N~~~~~c~~~~~~~~l~ 274 (306)
T 2z66_A 216 TFP----YKCLNSLQVLDYSLNHIMTSKKQELQHF----PSSLAFLNLTQNDFACTCEHQSFLQWIK 274 (306)
T ss_dssp SGG----GTTCTTCCEEECTTSCCCBCSSSSCCCC----CTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred hhh----ccCcccCCEeECCCCCCcccCHHHHHhh----hccCCEEEccCCCeecccChHHHHHHHH
Confidence 322 3455777888888777776543333221 1357777777777653 23334444444
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-20 Score=188.45 Aligned_cols=223 Identities=17% Similarity=0.151 Sum_probs=124.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
.+++++|+|++|.+.. ++..+..+++|++|++++|.++. ++..+..+++|++|++++|.+.. ++.
T Consensus 80 ~~~l~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA-----LPA 144 (328)
T ss_dssp STTCCEEEEESSCCSS-----CCSCGGGGTTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC-----CCG
T ss_pred ccceeEEEccCCCchh-----cChhhhhCCCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc-----CcH
Confidence 4778899999888763 45556667888888888888762 33445667788888888888773 445
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHH---------HcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCC
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELL---------KNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNG 311 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l---------~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~ 311 (597)
.+..+++|++|++++|.+... ++..+ ..+++|++|++++|.++ .++..+..+++|++|++++
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~----~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTE----LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-----SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCC----CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-----CCCGGGGGCTTCCEEEEES
T ss_pred HHhcCcCCCEEECCCCCCccc----cChhHhhccchhhhccCCCCCEEECcCCCcC-----cchHhhcCCCCCCEEEccC
Confidence 566678888888888654432 22222 12466666666666654 2233445556666666666
Q ss_pred CCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcE
Q 007577 312 NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLW 391 (597)
Q Consensus 312 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 391 (597)
|.++... ..+..+++|++|++++|.+... +...+ ..+++|+.|++++|.+... ++..+..+++|++
T Consensus 216 N~l~~l~-----~~l~~l~~L~~L~Ls~n~~~~~----~p~~~-~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 216 SPLSALG-----PAIHHLPKLEELDLRGCTALRN----YPPIF-GGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEK 281 (328)
T ss_dssp SCCCCCC-----GGGGGCTTCCEEECTTCTTCCB----CCCCT-TCCCCCCEEECTTCTTCCB----CCTTGGGCTTCCE
T ss_pred CCCCcCc-----hhhccCCCCCEEECcCCcchhh----hHHHh-cCCCCCCEEECCCCCchhh----cchhhhcCCCCCE
Confidence 6555322 2244555566666655544332 11111 2233455555555443331 3333444444555
Q ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 392 INLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 392 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
|+|++|.+... ++..+..+++|+.+++..+
T Consensus 282 L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 282 LDLRGCVNLSR----LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCC----CCGGGGGSCTTCEEECCGG
T ss_pred EeCCCCCchhh----ccHHHhhccCceEEeCCHH
Confidence 55544443332 3333444444444444433
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-19 Score=180.73 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHH--hcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDIL--VDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l--~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
.++.+.+.++.+++..+..+...+.. ++|++|++++|.+..... ..+ ..+++|++|++++|.++......-..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~----~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~ 139 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMP----PLPLEATGLALSSLRLRNVSWATGRSWLAEL 139 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCC----CCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchh----hhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence 45555555555555544444443322 445555555555543211 111 23455555555555554311100001
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|++++|.++... +..+..+++|++|++++|.+...........+..+++|++|++++|.++.. .
T Consensus 140 ~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--~ 213 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHSPAFS----CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--T 213 (310)
T ss_dssp HTTBCSCCCEEEEECCSSCCCC----TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--H
T ss_pred HhhhccCCCEEEeeCCCcchhh----HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--H
Confidence 1223455555555555553211 222334455555555555543221100011123445555555555555421 1
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcC---CCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNC---KSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN 425 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~---~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 425 (597)
.....+...+++|++|++++|.++.. .+..+..+ ++|++|+|++|.++. ++..+ .++|++|+|++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~----~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRAT----VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCC----CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCSC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCcc----chhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCCC
Confidence 11111112223555555555555441 12222222 355555555555542 22211 145555555555
Q ss_pred CCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 426 NIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 426 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
+|+... .+..+++|++|+|++|++++
T Consensus 283 ~l~~~~------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRAP------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCC------CTTSCCCCSCEECSSTTTSC
T ss_pred cCCCCc------hhhhCCCccEEECcCCCCCC
Confidence 555320 02334555555555555543
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-17 Score=149.43 Aligned_cols=137 Identities=19% Similarity=0.242 Sum_probs=69.0
Q ss_pred HHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 406 KIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
.+...+..+++|++|+|++| .|++.++..++..+..+++|++|+|++|.|++++...+.+.+..+++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34444444555555555555 55555555555555555555555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhcCCCccEEEc--cCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChH
Q 007577 485 ASGAEFVADMLRYNNTISILDL--RANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDD 543 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l--~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~ 543 (597)
+.+...++..+..+++|++|++ ++|.|++.+...+++.+.. +++|++|+|++|.|++.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-NTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-CSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-CCCcCEEeccCCCCChH
Confidence 5555555555544445555555 4445554444444444432 24444444444444433
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-20 Score=198.35 Aligned_cols=247 Identities=16% Similarity=0.151 Sum_probs=152.7
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
..+.++.+++.++.. +..+ .++++.|+|++|.++.... ..+..+++|++|+|++|.++... ...+
T Consensus 44 ~~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~----~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIE----IGAF 108 (440)
T ss_dssp TSCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEEC----GGGG
T ss_pred CCCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccC----hhhc
Confidence 456777777766542 2211 2678888888888876432 33455688888888888876432 2345
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAF 377 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~ 377 (597)
..+++|++|+|++|.++.... ..+..+++|++|++++|.++.. .......+++|+.|++++| .+...
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~-----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPN----GAFVYLSKLKELWLRNNPIESI-----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCT----TTSCSCSSCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCeeCH----hHhhccccCceeeCCCCccccc-----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 567788888888887765443 2356777888888888877652 1222244567777777774 33331
Q ss_pred HHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
....+..+++|++|+|++|.+++. + .+..+++|++|+|++|.|+... ...+..+++|++|+|++|.++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~-----~-~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREI-----P-NLTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSC-----C-CCTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCccc-----c-ccCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCCCceeE
Confidence 112356677777777777777642 1 2455667777777777776542 2234455777777777776665
Q ss_pred HHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 458 DGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 458 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
... ..+..+++|++|+|++|+++..... .+..+++|+.|++++|.+
T Consensus 246 ~~~----~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 246 IER----NAFDNLQSLVEINLAHNNLTLLPHD----LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp ECT----TSSTTCTTCCEEECTTSCCCCCCTT----TTSSCTTCCEEECCSSCE
T ss_pred ECh----hhhcCCCCCCEEECCCCCCCccChh----HhccccCCCEEEcCCCCc
Confidence 422 2234456777777777776654332 233456677777777644
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6e-20 Score=195.22 Aligned_cols=237 Identities=21% Similarity=0.236 Sum_probs=154.0
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
..++|++|+|++|.+... .+..+..+++|+.|+|++|.++.... +..+++|++|+|++|.++...
T Consensus 32 ~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~----- 96 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI----SAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL----- 96 (487)
T ss_dssp TGGGCCEEECCSSCCCCC----CGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE-----
T ss_pred cCCCccEEEeeCCcCCCC----CHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC-----
Confidence 345788888888887653 23456777888888888888764321 566778888888888776431
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..++|++|++++|.++.... ..+++|++|++++|.+++.. +..+..+++|+.|++++|.++....
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCC----chhhcCCCCCCEEECCCCCCCCcCh
Confidence 23778888888888776421 12467888888888876432 2334556788888888887776433
Q ss_pred HHHHHHh-hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCC
Q 007577 320 NALAKGL-EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMND 398 (597)
Q Consensus 320 ~~l~~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 398 (597)
..+ ..+++|+.|++++|.+++.. .. ..+++|+.|+|++|.++. ++..+..+++|+.|+|++|.
T Consensus 162 ----~~l~~~l~~L~~L~Ls~N~l~~~~------~~-~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 162 ----AELAASSDTLEHLNLQYNFIYDVK------GQ-VVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ----GGGGGGTTTCCEEECTTSCCCEEE------CC-CCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSC
T ss_pred ----HHHhhhCCcccEEecCCCcccccc------cc-ccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCc
Confidence 222 25677888888888776531 11 134577778888877776 33446677777777777777
Q ss_pred CCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEEC
Q 007577 399 IGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDL 450 (597)
Q Consensus 399 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 450 (597)
++. ++..+..+++|+.|++++|.+.... +...+..++.|+.+++
T Consensus 226 l~~-----lp~~l~~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 226 LVL-----IEKALRFSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCE-----ECTTCCCCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHH
T ss_pred Ccc-----cchhhccCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEec
Confidence 765 3444555677777777777776332 3334444455555444
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-20 Score=195.12 Aligned_cols=226 Identities=19% Similarity=0.187 Sum_probs=134.8
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
+++++|+|++|.++... ...+..+++|++|+|++|.|+... +..+..+++|++|+|++|.++.... ..
T Consensus 75 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIE----VGAFNGLASLNTLELFDNWLTVIPS----GA 142 (452)
T ss_dssp TTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCSBCCT----TT
T ss_pred CCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcC----hhhccCcccCCEEECCCCcCCccCh----hh
Confidence 67888888888887642 233455688888888888876432 2345567788888888887765443 33
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
+..+++|++|++++|.++.. .......+++|+.|++++| .+... ....+..+++|++|+|++|.+++.
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~l~~~~~l~~i----~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI-----PSYAFNRVPSLMRLDLGELKKLEYI----SEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE-----CTTTTTTCTTCCEEECCCCTTCCEE----CTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred hcccCCCCEEECCCCCccee-----CHhHHhcCCcccEEeCCCCCCcccc----ChhhccCCCCCCEEECCCCccccc--
Confidence 55677788888887777642 2222244557777777774 33331 112345666777777777766642
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+..+++|++|+|++|.|+... ...+..+++|++|+|++|.++.... ..+..+++|++|+|++|+++
T Consensus 212 ----~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 212 ----PNLTPLVGLEELEMSGNHFPEIR----PGSFHGLSSLKKLWVMNSQVSLIER----NAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ----CCCTTCTTCCEEECTTSCCSEEC----GGGGTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCS
T ss_pred ----ccccccccccEEECcCCcCcccC----cccccCccCCCEEEeCCCcCceECH----HHhcCCCCCCEEECCCCcCC
Confidence 12445566777777777666532 2234445666666666666654322 22334466666666666665
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 485 ASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
..... .+..+++|+.|++++|.
T Consensus 280 ~~~~~----~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHD----LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTT----SSTTCTTCCEEECCSSC
T ss_pred ccChH----HhccccCCCEEEccCCC
Confidence 43322 12334566666666664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-20 Score=196.40 Aligned_cols=260 Identities=17% Similarity=0.128 Sum_probs=187.3
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHh
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGL 326 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 326 (597)
....++.++..++.. +..+ .++++.|+|++|+|+... ...+..+++|++|+|++|.++.... ..+
T Consensus 44 ~~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~i~~----~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREV-----PDGI--STNTRLLNLHENQIQIIK----VNSFKHLRHLEILQLSRNHIRTIEI----GAF 108 (440)
T ss_dssp TSCEEECCSCCCSSC-----CSCC--CTTCSEEECCSCCCCEEC----TTTTSSCSSCCEEECCSSCCCEECG----GGG
T ss_pred CCCEEEeCCCCcCcC-----CCCC--CCCCcEEEccCCcCCeeC----HHHhhCCCCCCEEECCCCcCCccCh----hhc
Confidence 456788888777652 2222 267999999999987543 2456678999999999999887654 457
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHH
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (597)
.++++|++|++++|.++.. .......+++|+.|++++|.++.. ....+..+++|++|++++| .++..
T Consensus 109 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i--- 176 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTI-----PNGAFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYI--- 176 (440)
T ss_dssp TTCSSCCEEECCSSCCSSC-----CTTTSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEE---
T ss_pred cCCccCCEEECCCCcCCee-----CHhHhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCccee---
Confidence 7899999999999988753 222224567899999999998872 2345678899999999985 55442
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCCh
Q 007577 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
-...+..+++|++|+|++|.++... .+..+++|++|+|++|.++.... ..+..+++|++|++++|+++.
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREIP------NLTPLIKLDELDLSGNHLSAIRP----GSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSCC------CCTTCSSCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCE
T ss_pred -CcchhhcccccCeecCCCCcCcccc------ccCCCcccCEEECCCCccCccCh----hhhccCccCCEEECCCCceeE
Confidence 1124566889999999999888632 25667899999999998876432 344567899999999999887
Q ss_pred hHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC-hHHHHHHHHHHH
Q 007577 486 SGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR-DDGAFAIAQALK 553 (597)
Q Consensus 486 ~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~-~~~~~~l~~~l~ 553 (597)
..... +..+++|+.|+|++|.++......+... ++|+.|+|++|.+. +-....+..+++
T Consensus 246 ~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 246 IERNA----FDNLQSLVEINLAHNNLTLLPHDLFTPL-----HHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp ECTTS----STTCTTCCEEECTTSCCCCCCTTTTSSC-----TTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred EChhh----hcCCCCCCEEECCCCCCCccChhHhccc-----cCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 65433 4456899999999998886544433332 67999999999764 223444555544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-20 Score=183.50 Aligned_cols=113 Identities=21% Similarity=0.197 Sum_probs=48.3
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
+..+++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.++....
T Consensus 125 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-- 194 (285)
T 1ozn_A 125 FRGLAALQYLYLQDNALQAL----PDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHP-- 194 (285)
T ss_dssp TTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECT--
T ss_pred hhCCcCCCEEECCCCccccc----CHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCCCcccccCH--
Confidence 33444455555555444432 11123334455555555554443211 112334555555555554443211
Q ss_pred HHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 463 LSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 463 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+..+++|++|++++|.++...... +..+++|+.|++++|.+
T Consensus 195 --~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 195 --HAFRDLGRLMTLYLFANNLSALPTEA----LAPLRALQYLRLNDNPW 237 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCSCCCHHH----HTTCTTCCEEECCSSCE
T ss_pred --hHccCcccccEeeCCCCcCCcCCHHH----cccCcccCEEeccCCCc
Confidence 12233345555555555554433222 23345555555555544
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-20 Score=196.77 Aligned_cols=247 Identities=18% Similarity=0.125 Sum_probs=177.3
Q ss_pred cCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 248 L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
...++.++..++.. +..+ .+++++|+|++|.|+... +..+..+++|+.|+|++|.++.... ..+.
T Consensus 56 ~~~v~c~~~~l~~i-----P~~~--~~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~ 120 (452)
T 3zyi_A 56 FSKVVCTRRGLSEV-----PQGI--PSNTRYLNLMENNIQMIQ----ADTFRHLHHLEVLQLGRNSIRQIEV----GAFN 120 (452)
T ss_dssp SCEEECCSSCCSSC-----CSCC--CTTCSEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECT----TTTT
T ss_pred CcEEEECCCCcCcc-----CCCC--CCCccEEECcCCcCceEC----HHHcCCCCCCCEEECCCCccCCcCh----hhcc
Confidence 45677776666542 2211 257999999999987532 3456678999999999999887654 4467
Q ss_pred cCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHH
Q 007577 328 GNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEK 406 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~ 406 (597)
++++|++|++++|.++.. .......+++|+.|++++|.++.. ....+..+++|++|++++| .++...
T Consensus 121 ~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~--- 188 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVI-----PSGAFEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS--- 188 (452)
T ss_dssp TCTTCCEEECCSSCCSBC-----CTTTSSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC---
T ss_pred CcccCCEEECCCCcCCcc-----ChhhhcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC---
Confidence 889999999999988753 222234567899999999998862 2335678899999999985 554421
Q ss_pred HHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 407 IADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 407 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
...+..+++|++|+|++|+++... .+..+++|++|+|++|.++.... ..+..+++|++|++++|+++..
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKDMP------NLTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSSCC------CCTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTTSCCCEE
T ss_pred -hhhccCCCCCCEEECCCCcccccc------cccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCCCcCceE
Confidence 123556789999999999887632 25667889999999998876432 3455678999999999988776
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
.... +..+++|+.|++++|.++......+... ++|+.|+|++|.+.
T Consensus 258 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 258 ERNA----FDGLASLVELNLAHNNLSSLPHDLFTPL-----RYLVELHLHHNPWN 303 (452)
T ss_dssp CTTT----TTTCTTCCEEECCSSCCSCCCTTSSTTC-----TTCCEEECCSSCEE
T ss_pred CHHH----hcCCCCCCEEECCCCcCCccChHHhccc-----cCCCEEEccCCCcC
Confidence 4433 4456889999999998876544333322 67889999888764
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-20 Score=188.73 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=17.0
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCC
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIG 231 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 231 (597)
++|++|++++|.++... ...+..+++|++|++++|.++
T Consensus 28 ~~l~~L~L~~n~l~~i~----~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 28 SSATRLELESNKLQSLP----HGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp TTCCEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCC
T ss_pred CCCCEEECCCCccCccC----HhHhhccccCCEEECCCCccC
Confidence 35555555555544211 112234445555555555444
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-20 Score=181.87 Aligned_cols=218 Identities=18% Similarity=0.143 Sum_probs=148.1
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCC-CChhHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVA 380 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~ 380 (597)
++|++|++++|.++.... ..+..+++|++|++++|.+++.....+ ..+++|+.|++++|. ++.. .+
T Consensus 32 ~~l~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~l~~~----~~ 98 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPA----ASFRACRNLTILWLHSNVLARIDAAAF-----TGLALLEQLDLSDNAQLRSV----DP 98 (285)
T ss_dssp TTCSEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTTT-----TTCTTCCEEECCSCTTCCCC----CT
T ss_pred CCceEEEeeCCcCCccCH----HHcccCCCCCEEECCCCccceeCHhhc-----CCccCCCEEeCCCCCCcccc----CH
Confidence 466666666666655433 234566777777777777665321111 344577788887775 5552 23
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHH
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (597)
..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++.... ..+..+++|++|++++|.++....
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECT
T ss_pred HHhcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCCCcccccCH
Confidence 4567788899999999988763 23446678899999999998876422 235567899999999998875422
Q ss_pred HHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007577 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i 540 (597)
..+..+++|++|++++|.++...+.. +..+++|+.|++++|.+++.....+... ++|+.|++++|.+
T Consensus 171 ----~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 171 ----RAFRGLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYLRLNDNPW 237 (285)
T ss_dssp ----TTTTTCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEEECCSSCE
T ss_pred ----HHhcCccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcCCHHHcccC-----cccCEEeccCCCc
Confidence 23455689999999999988764433 4456899999999998887665555443 7799999999987
Q ss_pred Ch-HHHHHHHHHHH
Q 007577 541 RD-DGAFAIAQALK 553 (597)
Q Consensus 541 ~~-~~~~~l~~~l~ 553 (597)
.. .....+..+++
T Consensus 238 ~c~~~~~~~~~~l~ 251 (285)
T 1ozn_A 238 VCDCRARPLWAWLQ 251 (285)
T ss_dssp ECSGGGHHHHHHHH
T ss_pred cCCCCcHHHHHHHH
Confidence 52 33334445533
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-19 Score=186.92 Aligned_cols=218 Identities=18% Similarity=0.150 Sum_probs=143.2
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|+.|+|++|.++... +..+..+++|++|+|++|.++.... +..+++|++|+|++|.+++..
T Consensus 33 ~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------ 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQIS----AADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQELL------ 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCC----GGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEEE------
T ss_pred CCCccEEEeeCCcCCCCC----HHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCCC------
Confidence 447888888888876532 2345667788888888888765321 455688888888888776531
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
..++|++|++++|.++.... ..+++|+.|++++|.++.... ..+..+++|+.|++++|.+++....
T Consensus 97 ---~~~~L~~L~L~~N~l~~~~~-------~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (487)
T 3oja_A 97 ---VGPSIETLHAANNNISRVSC-------SRGQGKKNIYLANNKITMLRD----LDEGCRSRVQYLDLKLNEIDTVNFA 162 (487)
T ss_dssp ---ECTTCCEEECCSSCCCCEEE-------CCCSSCEEEECCSSCCCSGGG----BCGGGGSSEEEEECTTSCCCEEEGG
T ss_pred ---CCCCcCEEECcCCcCCCCCc-------cccCCCCEEECCCCCCCCCCc----hhhcCCCCCCEEECCCCCCCCcChH
Confidence 23678888888888764321 135678888888887766433 2345677788888888877664222
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIH 428 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 428 (597)
.+...+++|+.|+|++|.++.. ..+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.|+
T Consensus 163 ----~l~~~l~~L~~L~Ls~N~l~~~------~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 163 ----ELAASSDTLEHLNLQYNFIYDV------KGQVVFAKLKTLDLSSNKLAF-----MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp ----GGGGGTTTCCEEECTTSCCCEE------ECCCCCTTCCEEECCSSCCCE-----ECGGGGGGTTCSEEECTTSCCC
T ss_pred ----HHhhhCCcccEEecCCCccccc------cccccCCCCCEEECCCCCCCC-----CCHhHcCCCCccEEEecCCcCc
Confidence 2222345777888888777762 112346777777777777775 2233556677777777777777
Q ss_pred hHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 429 SKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 429 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
. ++..+..+++|+.|++++|++.
T Consensus 228 ~-----lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 L-----IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp E-----ECTTCCCCTTCCEEECTTCCBC
T ss_pred c-----cchhhccCCCCCEEEcCCCCCc
Confidence 5 3334555677777777777776
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=166.87 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=85.6
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
++|++|++++|.+++. . .+..+++|++|++++|.+++.. . +..+++|++|++++|.++... .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~-----~-~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLA-----P-LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCG-----G-GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCCh-----h-HccCCCCCEEEccCCcCCCch------h
Confidence 5667777777766652 1 2344566666666666665422 1 445566666666666655432 2
Q ss_pred hhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHH
Q 007577 326 LEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAE 405 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 405 (597)
+..+++|++|++++|.+++.. . ...+++|+.|++++|.++.. +. +..+++|++|++++|.+++.
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~--~-----l~~l~~L~~L~l~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~~--- 166 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVT--P-----LAGLSNLQVLYLDLNQITNI-----SP-LAGLTNLQYLSIGNAQVSDL--- 166 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCG--G-----GTTCTTCCEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC---
T ss_pred hcCCCCCCEEECCCCCCCCch--h-----hcCCCCCCEEECCCCccCcC-----cc-ccCCCCccEEEccCCcCCCC---
Confidence 445566666666666554421 0 12334555555555555542 11 44455555555555555442
Q ss_pred HHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 406 KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 406 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
.. +..+++|++|++++|.+++... +..+++|++|++++|++++
T Consensus 167 --~~-l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 167 --TP-LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp --GG-GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCB
T ss_pred --hh-hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCc
Confidence 11 3344555555555555444211 3334445555555554443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-18 Score=168.18 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=138.9
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|++|++++|.++.- + .+..+++|++|++++|.++.... +..+++|++|++++|.+++.. .
T Consensus 41 ~~L~~L~l~~~~i~~l-----~-~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~~~------~ 102 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI-----E-GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKNVS------A 102 (308)
T ss_dssp HTCCEEECTTSCCCCC-----T-TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEEeeCCCccCc-----h-hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCCch------h
Confidence 6788899988888642 1 35678888888888888876543 667888888888888877631 1
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|++++|.++.. + .+..+++|++|++++|.+++.. .+..+++|++|++++|.+++...
T Consensus 103 ~-~~l~~L~~L~l~~n~l~~~-----~-~l~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 103 I-AGLQSIKTLDLTSTQITDV-----T-PLAGLSNLQVLYLDLNQITNIS------PLAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp G-TTCTTCCEEECTTSCCCCC-----G-GGTTCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG-
T ss_pred h-cCCCCCCEEECCCCCCCCc-----h-hhcCCCCCCEEECCCCccCcCc------cccCCCCccEEEccCCcCCCChh-
Confidence 2 3456788888888888772 2 2677888888888888877632 16667888888888888876321
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRD 513 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~ 513 (597)
+..+++|++|++++|.+++... +..+++|++|++++|.+++... +..+++|+.|++++|.++.
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~~------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVSP------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCGG------GTTCTTCCEEEEEEEEEEC
T ss_pred -----hcCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCcccc------ccCCCCCCEEEccCCeeec
Confidence 5667888888888887765432 5567788888888888776541 4567888888888887654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=137.60 Aligned_cols=135 Identities=15% Similarity=0.217 Sum_probs=81.5
Q ss_pred HHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 434 AIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
.+...+.+.+.|++|+|++| .|++++...+.+.++.++.|++|+|++|+|++.+...++.+++.+++|++|+|++|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34445555556666666653 66666666666666666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHhhcCccccEEEccCC---CCChHHHHHHHHHHHhCCCCceeEEEcccCccc
Q 007577 513 DEGAKCLAQSFKVVNEALTSIDLAFN---EIRDDGAFAIAQALKANEDVAVTSLNLANNFLT 571 (597)
Q Consensus 513 ~~~~~~l~~~l~~~n~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N~i~ 571 (597)
+.|...++++++. |++|++|+|++| .|++.+...|+.+++.|+. |++|+++.|.+.
T Consensus 112 ~~Ga~ala~aL~~-N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t--L~~L~l~~~~~g 170 (197)
T 1pgv_A 112 PELLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES--LLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS--CCEEECCCCCHH
T ss_pred HHHHHHHHHHHhh-CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC--cCeEeccCCCcc
Confidence 6666666666542 455666666543 4566666666666666655 666666655443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=137.51 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred HHHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH
Q 007577 380 AEYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (597)
...+...+.|++|+|++| .|+++|+..+++++..++.|++|+|++|.|++.+..++++.|..++.|++|+|++|.|++.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 333444455555555553 5555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhCCCcCEEecCCC---CCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 459 GAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 459 ~~~~l~~~l~~~~~L~~L~L~~n---~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
|...+.+.++.++.|++|+|++| .+++.+...++.++..+++|+.|+++.|.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 55555555555555555555432 34555545555555555555555554443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.4e-18 Score=166.57 Aligned_cols=176 Identities=22% Similarity=0.210 Sum_probs=79.9
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
+++.|++++|.++.... ..+..+++|++|++++|.++.... ...+++|++|++++|+++. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCccCH----HHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 45555555555544321 222334555555555555544211 0234555555555555531 22223
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+++|++|++++|.++.... ..+..+++|++|++++|.++.. .......+++|+.|++++|.++..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~----~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~l---- 163 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANNNLTEL---- 163 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCSCC----
T ss_pred ccCCCCCEEECCCCcCcccCH----HHHcCCCCCCEEECCCCCCCcc-----ChhhcccccCCCEEECCCCcCCcc----
Confidence 344555555555555543322 2234455555555555555431 111112333555555555555441
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
....+..+++|++|+|++|.++. ++..+..++.|++|+|++|.+
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 11223344555555555555543 223333344455555555543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-18 Score=165.50 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=18.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|++++|.+++.. ++..+..+++|++|++++|.++.
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCE
T ss_pred ccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCc
Confidence 33444555555544443310 12233344445555555544443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-18 Score=168.37 Aligned_cols=209 Identities=17% Similarity=0.108 Sum_probs=117.3
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHH
Q 007577 303 TIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEY 382 (597)
Q Consensus 303 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 382 (597)
+|++|++++|.++.... ..+.++++|++|++++|.++..... ....+++|+.|++++|.++.. .+..
T Consensus 29 ~l~~L~ls~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~----~~~~ 95 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDG-----AYQSLSHLSTLILTGNPIQSL----ALGA 95 (276)
T ss_dssp TCCEEECTTCCCCEECT----TTTTTCTTCSEEECTTCCCCEECTT-----TTTTCTTCCEEECTTCCCCEE----CTTT
T ss_pred CccEEECCCCcccccCH----hHhccccCCcEEECCCCcCCccCHH-----HccCCcCCCEEECCCCccCcc----Chhh
Confidence 46666666665554432 2344566666666666666542111 113344677777777766652 2234
Q ss_pred HHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 383 IKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 383 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
+..+++|++|++++|.++... ...+..+++|++|++++|.++... ++..+..+++|++|++++|.++......
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred hcCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 566777777777777766531 112455677888888888776522 2234555677777787777776543332
Q ss_pred HHHHHhhCCCcC-EEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 463 LSEVLKFHGNIN-TLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 463 l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
+... ...+.|. +|++++|.++......+ ...+|++|++++|.++......+... ++|++|++++|.+.
T Consensus 169 ~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 169 LRVL-HQMPLLNLSLDLSLNPMNFIQPGAF-----KEIRLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWD 237 (276)
T ss_dssp GHHH-HTCTTCCEEEECCSSCCCEECTTSS-----CSCCEEEEECCSSCCSCCCTTTTTTC-----CSCCEEECCSSCBC
T ss_pred hhhh-hhccccceeeecCCCcccccCcccc-----CCCcccEEECCCCceeecCHhHhccc-----ccccEEEccCCccc
Confidence 3222 2223333 67777777765432211 22467777777777665433222222 56777777777665
Q ss_pred h
Q 007577 542 D 542 (597)
Q Consensus 542 ~ 542 (597)
.
T Consensus 238 c 238 (276)
T 2z62_A 238 C 238 (276)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-17 Score=163.09 Aligned_cols=217 Identities=20% Similarity=0.157 Sum_probs=166.0
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++++++++++++.++.. +..+ .++++.|++++|.++... ...+..+++|++|++++|.++.....
T Consensus 8 ~l~~l~~l~~~~~~l~~i-----p~~~--~~~l~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~--- 73 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-----PPDL--PKDTTILHLSENLLYTFS----LATLMPYTRLTQLNLDRAELTKLQVD--- 73 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-----CSCC--CTTCCEEECTTSCCSEEE----GGGGTTCTTCCEEECTTSCCCEEECC---
T ss_pred ccCCccEEECCCCCCCcC-----CCCC--CCCCCEEEcCCCcCCccC----HHHhhcCCCCCEEECCCCccCcccCC---
Confidence 467899999999988752 2222 368999999999987543 23456789999999999999865321
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
..+++|++|++++|.++. ++..+..+++|++|++++|+++... +..+..+++|++|++++|.++....
T Consensus 74 ---~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 ---GTLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp ---SCCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ---CCCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccCh
Confidence 457999999999999885 4445567789999999999986422 2446678999999999999886554
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
..+..+++|+.|++++|.++. +.......+++|+.|++++|.++. ++..+...++|++|+|++|.+
T Consensus 142 ----~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 142 ----GLLTPTPKLEKLSLANNNLTE-----LPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ----TTTTTCTTCCEEECTTSCCSC-----CCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred ----hhcccccCCCEEECCCCcCCc-----cCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCc
Confidence 345678999999999999875 333333556799999999999986 666677788999999999977
Q ss_pred C-cHHHHHHHHHHhcCCC
Q 007577 400 G-DEGAEKIADALKQNRT 416 (597)
Q Consensus 400 ~-~~~~~~l~~~l~~~~~ 416 (597)
. +-++..+..++...+.
T Consensus 208 ~C~c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 208 LCNCEILYFRRWLQDNAE 225 (290)
T ss_dssp CCSGGGHHHHHHHHHTGG
T ss_pred cCcCccHHHHHHHHhCcc
Confidence 6 3344555566555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-17 Score=163.49 Aligned_cols=13 Identities=8% Similarity=0.238 Sum_probs=5.7
Q ss_pred CCccEEEeccCCC
Q 007577 190 QTAEEVSFAANGI 202 (597)
Q Consensus 190 ~~L~~L~L~~~~l 202 (597)
++|+.|++++|.+
T Consensus 41 ~~L~~L~l~~~~i 53 (272)
T 3rfs_A 41 NSIDQIIANNSDI 53 (272)
T ss_dssp TTCCEEECTTSCC
T ss_pred cceeeeeeCCCCc
Confidence 3444444444443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-17 Score=161.42 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=17.9
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|++++|.+++. ....+..+++|++|++++|.++.
T Consensus 154 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQSL----PEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccCccCCEEECCCCCcCcc----CHHHhcCCccCCEEECCCCcCCc
Confidence 3444455555555544432 11112334444555555444443
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-17 Score=163.07 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=48.2
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.++.. ....+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++....
T Consensus 106 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~--- 174 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSL----PPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYNNQLKRVPE--- 174 (270)
T ss_dssp TTCSSCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred ccccCCCEEECCCCccCee----CHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecCCcCcEeCh---
Confidence 3444555555555544432 11123334555555555555443211 112334555555555554443211
Q ss_pred HHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+..+++|++|++++|.++..... .+..+++|+.|++++|.+
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKRVPEG----AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred -hHhccCCCcCEEECCCCcCCcCCHH----HhccccCCCEEEecCCCe
Confidence 1122334555555555554433221 122345555555555543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-17 Score=160.29 Aligned_cols=134 Identities=20% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVA 380 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 380 (597)
+++|++|++++|.++..+. ..+..+++|++|++++|.++.... .....+++|+.|++++|.++.. ..
T Consensus 84 l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~----~~ 150 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPI----GVFDQLVNLAELRLDRNQLKSLPP-----RVFDSLTKLTYLSLGYNELQSL----PK 150 (270)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCSSCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCC----CT
T ss_pred CCCCCEEECCCCcCCcCCH----hHcccccCCCEEECCCCccCeeCH-----HHhCcCcCCCEEECCCCcCCcc----CH
Confidence 4444444444444433222 123344555555555554443211 1112333455555555544441 11
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
..+..+++|++|+|++|.++.. ....+..+++|++|++++|.|+.... ..+..+++|+.|+|++|++
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRV----PEGAFDKLTELKTLKLDNNQLKRVPE----GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSSCB
T ss_pred hHccCCcccceeEecCCcCcEe----ChhHhccCCCcCEEECCCCcCCcCCH----HHhccccCCCEEEecCCCe
Confidence 2234455555555555555432 11123334555555555555543211 1123345555555555543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=148.58 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 344 (597)
++|++|++++|.+++. ..+..+++|++|++++|.++.... +..+++|++|++++|.+++
T Consensus 46 ~~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC
T ss_pred CcccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC
Confidence 4556666666555431 123345555555555555544321 3445555555555555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-15 Score=149.16 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=6.4
Q ss_pred CCccEEEeccCCCC
Q 007577 190 QTAEEVSFAANGIT 203 (597)
Q Consensus 190 ~~L~~L~L~~~~l~ 203 (597)
++|+.|++++|.++
T Consensus 46 ~~L~~L~l~~~~i~ 59 (291)
T 1h6t_A 46 NSIDQIIANNSDIK 59 (291)
T ss_dssp HTCCEEECTTSCCC
T ss_pred CcccEEEccCCCcc
Confidence 34444444444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-15 Score=137.34 Aligned_cols=14 Identities=14% Similarity=-0.005 Sum_probs=5.4
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|++++|+|
T Consensus 180 l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 180 FPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSCCEEEECBC--
T ss_pred CCCCCEEEeeCccc
Confidence 34444444444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-15 Score=138.28 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=16.4
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+++|++|++++|.+++.. .+..+++|++|++++|+|+
T Consensus 156 ~~l~~L~~L~l~~n~i~~~~------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 156 KTLPELKSLNIQFDGVHDYR------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGCSSCCEEECTTBCCCCCT------TGGGCSSCCEEEECBC---
T ss_pred cCCCCCCEEECCCCCCcChH------HhccCCCCCEEEeeCcccC
Confidence 33444555555554444321 2333455555555555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-14 Score=156.28 Aligned_cols=170 Identities=25% Similarity=0.196 Sum_probs=122.4
Q ss_pred CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh
Q 007577 274 SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG 353 (597)
Q Consensus 274 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 353 (597)
++|+.|++++|.+..- ..+..+++|+.|+|++|.+..... +..+++|+.|+|++|.+.+.. .
T Consensus 43 ~~L~~L~l~~n~i~~l------~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l~------~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDLS------S 104 (605)
T ss_dssp TTCCCCBCTTCCCCCC------TTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCCT------T
T ss_pred CCCCEEECcCCCCCCC------hHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCCh------h
Confidence 7788888888887642 135678888888888888776543 667888888888888876521 1
Q ss_pred hhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHH
Q 007577 354 LSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGAS 433 (597)
Q Consensus 354 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 433 (597)
+ ..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.|+....
T Consensus 105 l-~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 105 L-KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp S-TTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred h-ccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh-
Confidence 1 3456788888888887762 2366788888888888887763 346667888888888888776422
Q ss_pred HHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChh
Q 007577 434 AIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 434 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
+..+++|+.|+|++|.|++. ..+..+++|+.|+|++|.+...
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l------~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDL------RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBC------GGGTTCTTCSEEECCSEEEECC
T ss_pred -----hccCCCCCEEECcCCCCCCC------hHHccCCCCCEEEccCCcCcCC
Confidence 56678888888888877653 2355677888888888776543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-16 Score=152.02 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=69.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.++.|++++|.++.. .+..+..+++|++|+|++|.+++. ....+..+++|++|+|++|.++.... ..+
T Consensus 36 ~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~ 103 (251)
T 3m19_A 36 DTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVFDDLTELGTLGLANNQLASLPL----GVF 103 (251)
T ss_dssp TCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCCCT----TTT
T ss_pred CCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHhccCCcCCEEECCCCcccccCh----hHh
Confidence 344444444444431 112234444555555555544432 11223334455555555555443211 122
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCL 519 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l 519 (597)
..+++|++|+|++|.++.... ..+..+++|++|++++|+++..... .+..+++|++|++++|.++......+
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPS----GVFDRLTKLKELRLNTNQLQSIPAG----AFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCCCCEEEcCCCcCCCcCh----hHhccCCcccEEECcCCcCCccCHH----HcCcCcCCCEEECCCCcCCccCHHHH
Confidence 334555555555555442211 1123345555555555555443221 12334556666666665554332222
Q ss_pred HHHHhhcCccccEEEccCCCCCh
Q 007577 520 AQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 520 ~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
... ++|+.|++++|.+..
T Consensus 176 ~~l-----~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 176 DRL-----GKLQTITLFGNQFDC 193 (251)
T ss_dssp TTC-----TTCCEEECCSCCBCT
T ss_pred hCC-----CCCCEEEeeCCceeC
Confidence 221 456666666665543
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-15 Score=145.76 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=7.3
Q ss_pred cCCCCCEEEccCCCCC
Q 007577 328 GNKSLRELHLHGNSIG 343 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~ 343 (597)
.+++|++|++++|.++
T Consensus 105 ~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLK 120 (251)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred ccCCCCEEEcCCCcCC
Confidence 3444444444444443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-14 Score=157.25 Aligned_cols=169 Identities=23% Similarity=0.215 Sum_probs=96.0
Q ss_pred CCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 189 NQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 189 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
+++|+.|++++|.+.... .+..+++|+.|+|++|.+.+... +..+++|+.|+|++|.+++. .
T Consensus 42 L~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l------~ 103 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIKDL------S 103 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCCCC------T
T ss_pred CCCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCCCC------h
Confidence 467777777777765421 24566777777777777665421 44567777777777766652 1
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIR 348 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 348 (597)
.+..+++|++|+|++|.+++. ..+..+++|+.|+|++|.++.. ..+..+++|+.|+|++|.+.+...
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcCCcCCCchh-
Confidence 244556666666666666541 2344566666666666665543 224555666666666665554211
Q ss_pred HHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
...+++|+.|+|++|.+++ + ..+..+++|+.|+|++|.+.
T Consensus 171 ------l~~l~~L~~L~Ls~N~i~~-----l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 ------LAGLTKLQNLYLSKNHISD-----L-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp ------GTTCTTCCEEECCSSCCCB-----C-GGGTTCTTCSEEECCSEEEE
T ss_pred ------hccCCCCCEEECcCCCCCC-----C-hHHccCCCCCEEEccCCcCc
Confidence 1234455666666655554 1 22445555555555555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.7e-16 Score=148.60 Aligned_cols=179 Identities=11% Similarity=0.143 Sum_probs=81.7
Q ss_pred CccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCC-CChhHHHHHHHHHhcCCCcCEEEecC-CCCChHHHHHHHH
Q 007577 191 TAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNP-IGDEGVKCLCDILVDNAGVERLQLSS-VDLRDEGAKAIAE 268 (597)
Q Consensus 191 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~-~~l~~~~~~~l~~ 268 (597)
+|+.|++++|+++.... ..+..+++|++|++++|. ++.... ..+..+++|++|++++ |.++... ..
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~~l~~i~~----~~f~~l~~L~~L~l~~~n~l~~i~----~~ 99 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDVTLQQLES----HSFYNLSKVTHIEIRNTRNLTYID----PD 99 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCSSCCEECT----TTEESCTTCCEEEEEEETTCCEEC----TT
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCCCcceeCH----hHcCCCcCCcEEECCCCCCeeEcC----HH
Confidence 45555555555443211 122344555555555554 443211 1223345555555555 5554421 11
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCcc---EEEcCCC-CCChHHHHHHHHHhhcCCCCC-EEEccCCCCC
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIR---SLHLNGN-YGGALGANALAKGLEGNKSLR-ELHLHGNSIG 343 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~---~L~L~~n-~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~ 343 (597)
.+..+++|++|++++|.++. ++. +..+++|+ +|++++| .++.... ..+.++++|+ +|++++|.++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~----~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTSIPV----NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCEECT----TTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhhcCc----ccccchhcceeEEEcCCCCCc
Confidence 23334556666666655542 111 33344444 5555555 5544332 2244555666 6666666554
Q ss_pred hHHHHHHHHhhhcCccccceeeccCCC-CChhHHHHHHHHHHcC-CCCcEEEccCCCCCc
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNNS-ISAKGAFHVAEYIKNC-KSLLWINLYMNDIGD 401 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~ 401 (597)
... ...... ++|+.|++++|. ++.. .+..+..+ ++|++|++++|.++.
T Consensus 170 ~i~-----~~~~~~-~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 170 SVQ-----GYAFNG-TKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EEC-----TTTTTT-CEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred ccC-----HhhcCC-CCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCcccc
Confidence 321 111112 356666666663 5541 12234445 556666666655543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-16 Score=148.29 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=16.0
Q ss_pred CcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCC
Q 007577 247 GVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNM 285 (597)
Q Consensus 247 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 285 (597)
+|++|++++|+++.... ..+..+++|++|++++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~----~~~~~l~~L~~L~l~~n~ 66 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPS----HAFSNLPNISRIYVSIDV 66 (239)
T ss_dssp TCCEEEEESCCCSEECT----TTTTTCTTCCEEEEECCS
T ss_pred cccEEEEeCCcceEECH----HHccCCCCCcEEeCCCCC
Confidence 45555555555544211 122333455555555553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-15 Score=157.57 Aligned_cols=188 Identities=19% Similarity=0.206 Sum_probs=116.2
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
.+|+.|++++|.++. ++..+ .++|++|+|++|.++.. + ..+++|++|++++|.++.. +.
T Consensus 59 ~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~i-----p---~~l~~L~~L~Ls~N~l~~i-----p~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISL-----P---ELPASLEYLDACDNRLSTL-----PE- 117 (571)
T ss_dssp TTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSCC-----CC-
T ss_pred CCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCccc-----c---cccCCCCEEEccCCCCCCc-----ch-
Confidence 478888888887763 22211 25688888888887743 2 2357788888888877762 22
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
+. .+|++|++++|.|+. ++. .+++|+.|++++|.++..+. .+++|++|++++|.++..
T Consensus 118 l~--~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L~~l---- 175 (571)
T 3cvr_A 118 LP--ASLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQLTFL---- 175 (571)
T ss_dssp CC--TTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSCC----
T ss_pred hh--cCCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcCCC--------cCCCcCEEECCCCCCCCc----
Confidence 22 268888888887754 222 45777888888777765332 356777777777776652
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCC-------cEEEccCCCCCcHHHHHHHHHHhcCCCccEEEc
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL-------LWINLYMNDIGDEGAEKIADALKQNRTITTIDL 422 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L-------~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 422 (597)
.. +. ++|+.|+|++|.|+. ++. +.. +| +.|+|++|.|+. ++..+..+++|++|+|
T Consensus 176 -p~-l~---~~L~~L~Ls~N~L~~-----lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 176 -PE-LP---ESLEALDVSTNLLES-----LPA-VPV--RNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIIL 237 (571)
T ss_dssp -CC-CC---TTCCEEECCSSCCSS-----CCC-CC----------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEEC
T ss_pred -ch-hh---CCCCEEECcCCCCCc-----hhh-HHH--hhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEe
Confidence 11 11 467777777777765 222 211 34 777777776664 4444555666777777
Q ss_pred cCCCCChHHHHHHHHH
Q 007577 423 GGNNIHSKGASAIARV 438 (597)
Q Consensus 423 ~~n~l~~~~~~~l~~~ 438 (597)
++|.++......+...
T Consensus 238 ~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CSSSCCHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHh
Confidence 7777766655555443
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-14 Score=155.09 Aligned_cols=195 Identities=18% Similarity=0.211 Sum_probs=141.6
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
..+++.|+|++|.++. ++..+ .++|+.|++++|.|+... ..+++|++|++++|.++.. +.
T Consensus 58 ~~~L~~L~Ls~n~L~~-----lp~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-----p~ 117 (571)
T 3cvr_A 58 INQFSELQLNRLNLSS-----LPDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-----PE 117 (571)
T ss_dssp HTTCSEEECCSSCCSC-----CCSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-----CC
T ss_pred cCCccEEEeCCCCCCc-----cCHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-----ch
Confidence 3589999999998875 23322 378999999999987432 2457899999999998763 22
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
+. .+|++|++++|.++.. +. .+++|++|++++|.|+. ++. .+++|++|++++|.++..+.
T Consensus 118 -l~--~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 118 -LP--ASLKHLDVDNNQLTML-----PE---LPALLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp -CC--TTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred -hh--cCCCEEECCCCcCCCC-----CC---cCccccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-
Confidence 22 3899999999998873 22 46889999999999864 222 46799999999999876443
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+. ++|+.|++++|.++.... +...+....+.|+.|+|++|.|+. ++..+..+++|+.|+|++|.++
T Consensus 178 -----l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~-----lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 178 -----LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITH-----IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp -----CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCC-----CCGGGGGSCTTEEEECCSSSCC
T ss_pred -----hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCccee-----cCHHHhcCCCCCEEEeeCCcCC
Confidence 22 789999999999874211 211111122234999999999986 6777778999999999999999
Q ss_pred cHHHHHHHH
Q 007577 401 DEGAEKIAD 409 (597)
Q Consensus 401 ~~~~~~l~~ 409 (597)
......+..
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 875555544
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-15 Score=142.13 Aligned_cols=124 Identities=19% Similarity=0.274 Sum_probs=60.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.++. ++ .+..+++|++|++++|.+++. .. +..+++|++|++++|+++... . +
T Consensus 42 ~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~L~~N~i~~~-----~~-l~~l~~L~~L~L~~N~l~~l~-----~-~ 103 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-----LA-GMQFFTNLKELHLSHNQISDL-----SP-LKDLTKLEELSVNRNRLKNLN-----G-I 103 (263)
T ss_dssp TCSEEECTTSCCCC-----CT-TGGGCTTCCEEECCSSCCCCC-----GG-GTTCSSCCEEECCSSCCSCCT-----T-C
T ss_pred cCcEEECcCCCccc-----ch-HHhhCCCCCEEECCCCccCCC-----hh-hccCCCCCEEECCCCccCCcC-----c-c
Confidence 55555555555554 22 344555555555555555542 11 444555555555555554421 1 1
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
.. ++|++|++++|.+++. ..+..+++|++|++++|++++.. .+..+++|+.|++++|.+++.
T Consensus 104 ~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~N~i~~~~------~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 104 PS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRNNKLKSIV------MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTTSCCCBCG------GGGGCTTCCEEECTTSCCCBC
T ss_pred cc-CcccEEEccCCccCCC------hhhcCcccccEEECCCCcCCCCh------HHccCCCCCEEECCCCcCcch
Confidence 11 4555555555555442 12344455555555555554431 233445555555555555543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=138.23 Aligned_cols=157 Identities=10% Similarity=0.104 Sum_probs=74.9
Q ss_pred HhhcCCCCCEEEccCCC-CChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC---CCC
Q 007577 325 GLEGNKSLRELHLHGNS-IGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIG 400 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~ 400 (597)
.+..+|+|++|++++|. +. +.. + ..++|+.|++..|.++..++..+. ...+|+|++|+|+.+ ...
T Consensus 167 ll~~~P~L~~L~L~g~~~l~------l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~ 235 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS------IGK-K--PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGF 235 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB------CCS-C--BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTC
T ss_pred HHhcCCCCcEEEEeCCCCce------ecc-c--cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEecccccccc
Confidence 34556667777776652 11 000 0 134677777777776665443322 125677777776421 111
Q ss_pred cHHHHHHHHHHh--cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 401 DEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 401 ~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+.++..+...+. .+++|++|+|.+|.+++.+...++.. ..+++|++|+|++|.+++.++..+...+..+++|+.|++
T Consensus 236 ~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 236 DGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred chhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 211111222121 24556666666555555444444332 223555555555555555555555444444445555555
Q ss_pred CCCCCChhHHHHHHH
Q 007577 479 GWCQIGASGAEFVAD 493 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~ 493 (597)
++|.|++.+...+..
T Consensus 315 ~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 315 KYNYLSDEMKKELQK 329 (362)
T ss_dssp CSBBCCHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH
Confidence 555554444444443
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-14 Score=139.47 Aligned_cols=125 Identities=21% Similarity=0.235 Sum_probs=62.0
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
.+++|++|++++|.++.... +..+++|++|++++|.+++.. . +. . ++|+.|++++|.++..
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~------l~~l~~L~~L~L~~N~l~~l~--~----~~-~-~~L~~L~L~~N~l~~~----- 121 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP------LKDLTKLEELSVNRNRLKNLN--G----IP-S-ACLSRLFLDNNELRDT----- 121 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG------GTTCSSCCEEECCSSCCSCCT--T----CC-C-SSCCEEECCSSCCSBS-----
T ss_pred hCCCCCEEECCCCccCCChh------hccCCCCCEEECCCCccCCcC--c----cc-c-CcccEEEccCCccCCC-----
Confidence 34444444444444443321 344555555555555554310 0 10 1 3566666666655551
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
..+..+++|++|++++|.+++. ..+..+++|++|++++|.|++. ..+..+++|+.|++++|+++
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~~------~~l~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKSI------VMLGFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBC------GGGGGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEEEEE
T ss_pred -hhhcCcccccEEECCCCcCCCC------hHHccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCCccc
Confidence 1245556666666666665552 1344455666666666655553 22444455666666555443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-13 Score=134.86 Aligned_cols=221 Identities=13% Similarity=0.162 Sum_probs=104.1
Q ss_pred CccEEEccCCCCC-h---hHHHHHHHHHhcCCCcCEEEecCCCCChH-----HHHHHHHHHHcCCCccEEEeccCC-CCh
Q 007577 219 ALKTLNLSGNPIG-D---EGVKCLCDILVDNAGVERLQLSSVDLRDE-----GAKAIAELLKNNSILRVLELNNNM-IDY 288 (597)
Q Consensus 219 ~L~~L~Ls~n~l~-~---~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 288 (597)
.++.|.+....+. + ..+..+...+..+++|+.|.+.+....+. ....+...+..+|+|+.|+|++|. +.-
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 5778888755443 1 12333443344567888888765432110 001133445555666666666551 110
Q ss_pred hhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCC--C-CChHHHHHHHHhhhcCccccceee
Q 007577 289 SGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN--S-IGDEGIRALMSGLSSRKGKLAVLD 365 (597)
Q Consensus 289 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~-i~~~~~~~l~~~l~~~~~~L~~L~ 365 (597)
.. + ..++|++|++..|.++......+. ...+|+|++|+|+.+ . ..+.++..+...+..
T Consensus 188 ------~~-~-~~~~L~~L~L~~~~l~~~~l~~l~--~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~--------- 248 (362)
T 2ra8_A 188 ------GK-K-PRPNLKSLEIISGGLPDSVVEDIL--GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--------- 248 (362)
T ss_dssp ------CS-C-BCTTCSEEEEECSBCCHHHHHHHH--HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT---------
T ss_pred ------cc-c-cCCCCcEEEEecCCCChHHHHHHH--HccCCCCcEEEEeccccccccchhHHHHHHHHhc---------
Confidence 10 1 245556666555555544443322 124555555555321 1 111111111111110
Q ss_pred ccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCc
Q 007577 366 IGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVI 445 (597)
Q Consensus 366 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 445 (597)
..+++|++|+|.+|.+++.+...+..+ ..+++|++|+|+.|.|++.+...+...+..+++|
T Consensus 249 ------------------~~~p~Lr~L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 249 ------------------DRFPNLKWLGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp ------------------TTCTTCCEEEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred ------------------CCCCCcCEEeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 124555555555555555443333321 1245566666666666665555555444455566
Q ss_pred CEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 446 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+.|+|++|.|++.++..+.+.+ ...+++++++
T Consensus 310 ~~L~L~~n~i~d~~~~~l~~al-----g~~~~~~~~~ 341 (362)
T 2ra8_A 310 KFINMKYNYLSDEMKKELQKSL-----PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSBBCCHHHHHHHHHHC-----CSEEECCSBC
T ss_pred eEEECCCCcCCHHHHHHHHHHc-----CCEEEecCCc
Confidence 6666666666666555555442 2345555554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.1e-15 Score=162.51 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=63.5
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
.|+.|+|++|.++. ++. +..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+.. + .+
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-----p-~l 504 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GV 504 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GG
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-----c-cc
Confidence 46667777666654 233 5556667777777776663 333455566777777777766542 1 34
Q ss_pred hhCCCcCEEecCCCCCChhH-HHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 468 KFHGNINTLKLGWCQIGASG-AEFVADMLRYNNTISILDLRANGLRDE 514 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~L~~L~l~~n~i~~~ 514 (597)
..+++|++|+|++|+|+... +. .+..+++|+.|++++|.++..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~----~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQ----PLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTG----GGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCcEEECCCCCCCCCCCcH----HHhcCCCCCEEEecCCcCCCC
Confidence 55667777777777665542 22 234456777777777766543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-14 Score=153.76 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=84.0
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
.|+.|++++|.++.. +. + ..+++|+.|+|++|.++. ++..+..+++|++|+|++|.|+. ++ .
T Consensus 442 ~L~~L~Ls~n~l~~l--p~----~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~-----lp-~ 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL--CH----L-EQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALEN-----VD-G 503 (567)
T ss_dssp TCSEEECTTSCCSSC--CC----G-GGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCC-----CG-G
T ss_pred CceEEEecCCCCCCC--cC----c-cccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCC-----Cc-c
Confidence 577778877777652 11 1 344578888888887775 56667778888888888888776 33 5
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
+..+++|++|+|++|+|+... .+..+..+++|+.|+|++|+++... ..+...+..+++|+.|++
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~---~p~~l~~l~~L~~L~L~~N~l~~~~-~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA---AIQPLVSCPRLVLLNLQGNSLCQEE-GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS---TTGGGGGCTTCCEEECTTSGGGGSS-SCTTHHHHHCTTCSEEEC
T ss_pred cCCCCCCcEEECCCCCCCCCC---CcHHHhcCCCCCEEEecCCcCCCCc-cHHHHHHHHCcccCccCC
Confidence 667788888888888877632 0344566788888888888775431 122233444678888764
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-13 Score=140.32 Aligned_cols=105 Identities=24% Similarity=0.193 Sum_probs=52.1
Q ss_pred cEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHH-cCCCccEEEeccCCCChhhHHHHHHHHh
Q 007577 221 KTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLK-NNSILRVLELNNNMIDYSGFTSLAEALL 299 (597)
Q Consensus 221 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 299 (597)
+.++++++.++.. +..+ ...++.|+|++|.|+.... ..+. .+++|++|+|++|+|+... ...+.
T Consensus 21 ~~l~c~~~~l~~i-----P~~~--~~~l~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~L~~N~i~~i~----~~~~~ 85 (361)
T 2xot_A 21 NILSCSKQQLPNV-----PQSL--PSYTALLDLSHNNLSRLRA----EWTPTRLTNLHSLLLSHNHLNFIS----SEAFV 85 (361)
T ss_dssp TEEECCSSCCSSC-----CSSC--CTTCSEEECCSSCCCEECT----TSSSSCCTTCCEEECCSSCCCEEC----TTTTT
T ss_pred CEEEeCCCCcCcc-----CccC--CCCCCEEECCCCCCCccCh----hhhhhcccccCEEECCCCcCCccC----hhhcc
Confidence 5666766666542 1111 2446666666666665321 1122 3456666666666654321 12234
Q ss_pred hCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCCh
Q 007577 300 ENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGD 344 (597)
Q Consensus 300 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 344 (597)
.+++|++|+|++|.++.... ..+..+++|+.|+|++|.+..
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCCEEECCCCcCCcCCH----HHhCCCcCCCEEECCCCcccE
Confidence 45555555555555544322 223445555555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-14 Score=142.68 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=27.0
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
++|+.|+|++|.|+.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.
T Consensus 64 ~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFI----SSEAFVPVPNLRYLDLSSNHLHTL----DEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCEEECCCCcCCcc----ChhhccCCCCCCEEECCCCcCCcC----CHHHhCCCcCCCEEECCCCcccE
Confidence 3455555555554441 112334444555555555544432 11123334444444444444443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-12 Score=111.59 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARV 438 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 438 (597)
++|+.|++++|.+++. .++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. ++..
T Consensus 17 ~~l~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~~ 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG---KLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEVL 83 (149)
T ss_dssp GGCSEEECTTCBCBTT---BCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THHH
T ss_pred ccCeEEEccCCcCChh---HHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHHH
Confidence 3566666666655511 1333344556666666666665542 3344455666666666666553 2222
Q ss_pred hhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEcc
Q 007577 439 LKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLR 507 (597)
Q Consensus 439 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 507 (597)
+..+++|++|++++|.+++.. ....+..+++|++|++++|.++.... .....+..+++|+.||++
T Consensus 84 ~~~l~~L~~L~ls~N~i~~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNKIKDLS---TIEPLKKLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSCCCSHH---HHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCcCCChH---HHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 333466666666666655421 11233445556666666665544322 011223334556655554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.1e-13 Score=148.44 Aligned_cols=154 Identities=16% Similarity=0.255 Sum_probs=49.0
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhh-----HHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG-----FTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~-----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
+.++.|+|.++.+.... . ..|+.++|+.+.|.+.. +...+..+..+..|+.|+|++|.+.....
T Consensus 173 ~~~~~l~L~~n~~~~~~-----~-----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~- 241 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-----Q-----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA- 241 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSCCCG-
T ss_pred CccceEEeeCCCCCcch-----h-----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh-
Confidence 56788888887766521 1 12444445444443211 12223334445555555555555443221
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.+..+++|++|+|++|.++. ++..+ ..+++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+
T Consensus 242 ----~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 242 ----NIFKYDFLTRLYLNGNSLTE-----LPAEI-KNLSNLRVLDLSHNRLTS-----LPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp ----GGGGCCSCSCCBCTTSCCSC-----CCGGG-GGGTTCCEEECTTSCCSS-----CCSSGGGGTTCSEEECCSSCCC
T ss_pred ----hhcCCCCCCEEEeeCCcCcc-----cChhh-hCCCCCCEEeCcCCcCCc-----cChhhcCCCCCCEEECCCCCCC
Confidence 12244555555555555442 11111 223345555555555443 3334444455555555555444
Q ss_pred cHHHHHHHHHHhcCCCccEEEccCCCCChH
Q 007577 401 DEGAEKIADALKQNRTITTIDLGGNNIHSK 430 (597)
Q Consensus 401 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 430 (597)
. ++..+..+++|++|+|++|.|+..
T Consensus 307 ~-----lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 307 T-----LPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp C-----CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred c-----cChhhhcCCCccEEeCCCCccCCC
Confidence 2 233344444555555555554443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-13 Score=125.86 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=27.3
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
.+++|++|+|++|.++. ++..+..+++|++|+|++|+|+.... ..+..+++|+.|++++|++.
T Consensus 110 ~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH----GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECTTSCBC
T ss_pred cchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH----HHHhCCCCCCEEEeeCCCcc
Confidence 34444444444444442 22233344445555555554443211 12333455555555555443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-12 Score=116.99 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=61.8
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.+++. .++..+..+++|++|++++|.+++. ..+..+++|++|++++|.++.. +...+
T Consensus 25 ~L~~L~l~~n~l~~~---~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~~~ 91 (168)
T 2ell_A 25 AVRELVLDNCKSNDG---KIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDMLA 91 (168)
T ss_dssp SCSEEECCSCBCBTT---BCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCHHH
T ss_pred cCCEEECCCCCCChh---hHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHHHH
Confidence 455555555554410 1233334455555555555555442 2334455555555555555442 12222
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
..+++|++|++++|.+++... ...+..+++|++|++++|.++.... .....+..+++|+.|++++|.+.
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred hhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence 334555555555555544210 0223334555555555555543321 11123344455555555555443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-13 Score=126.55 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=38.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|+|++|.++.. ....+..+++|++|+|++|+|+. ++..+..+++|++|+|++|.++....
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~~--- 152 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVL----PSAVFDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIPH--- 152 (229)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCCT---
T ss_pred ccCCCcCEEECCCCcCCcc----ChhHhCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccCH---
Confidence 3444455555555544431 11122334555555555555542 22223444555555555554443211
Q ss_pred HHHHhhCCCcCEEecCCCCCC
Q 007577 464 SEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~ 484 (597)
..+..+++|++|++++|.+.
T Consensus 153 -~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 153 -GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp -TTTTTCTTCCEEECTTSCBC
T ss_pred -HHHhCCCCCCEEEeeCCCcc
Confidence 12233445555555555443
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-12 Score=111.10 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=88.4
Q ss_pred CCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH
Q 007577 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (597)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (597)
.++|++|++++|.+++.. ++..+..+++|++|++++|.++.. ..+..+++|++|++++|.++.. +..
T Consensus 16 ~~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~----~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGG----LEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSC----THH
T ss_pred CccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccch----HHH
Confidence 367888888888887211 334455678888888888888764 4466678888888888888763 233
Q ss_pred HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccC
Q 007577 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAF 537 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~---~~l~~~l~~~n~~L~~L~Ls~ 537 (597)
.+..+++|++|++++|.+++... ...+..+++|++|++++|.+++... ..+..+ ++|+.||+++
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~d 149 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGYD 149 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTBC
T ss_pred HhhhCCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCCC
Confidence 44456788888888888876421 1335567888888888887776543 233332 6678877753
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-13 Score=124.80 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=6.2
Q ss_pred cCCCCCEEEccCCCC
Q 007577 328 GNKSLRELHLHGNSI 342 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i 342 (597)
.+++|++|++++|.+
T Consensus 74 ~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQL 88 (208)
T ss_dssp TCTTCCEEECCSSCC
T ss_pred CCCCcCEEECCCCcC
Confidence 334444444444433
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.9e-13 Score=123.27 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAE 381 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 381 (597)
++|++|++++|.++.... ..+..+++|++|++++|.++.. .......+++|++|++++|.++.. .+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQSL-----PNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccCcc-----ChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 455666666665554332 2244566677777777666542 111113344667777777666641 222
Q ss_pred HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 382 YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 382 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
.+..+++|++|++++|.++.. ....+..+++|++|++++|.++.... ..+..+++|++|++++|.+
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSL----PDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCSCCB
T ss_pred HhcCccCCCEEEcCCCcCccc----CHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecCCCe
Confidence 345566666666666666542 11223445566666666665554211 1233445566666665544
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-12 Score=145.14 Aligned_cols=192 Identities=16% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHH-----HHHHHHHHhhhCCCccEEEccCCCCChhHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAA-----GIKAFDGVLQSNIALKTLNLSGNPIGDEGVK 236 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~-----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 236 (597)
+.++.|+|.++.+... ... .++.++|+.+.|... .+......+..++.|+.|+|++|.+..
T Consensus 173 ~~~~~l~L~~n~~~~~-----~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~---- 238 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-----NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFN---- 238 (727)
T ss_dssp -----------------------------------------------------------CCCCCCEEECTTSCCSC----
T ss_pred CccceEEeeCCCCCcc-----hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCC----
Confidence 4466777777665542 111 233333443333221 122344556677889999999988874
Q ss_pred HHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 237 CLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 237 ~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+...+..+++|++|+|++|.|+. ++..+..+++|++|+|++|.|+ .++..+..+++|++|+|++|.++.
T Consensus 239 -l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 239 -ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLT-----SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp -CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCS-----SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred -CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCC-----ccChhhcCCCCCCEEECCCCCCCc
Confidence 33334467889999999998874 4455667788999999999885 345667778899999999998875
Q ss_pred HHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccC
Q 007577 317 LGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396 (597)
Q Consensus 317 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 396 (597)
.+ ..+..+++|+.|+|++|.+.......+...- ..+..|+|++|.++.. + ...|+.|+++.
T Consensus 308 lp-----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~----~~~~~l~l~~N~l~~~----~------p~~l~~l~l~~ 368 (727)
T 4b8c_D 308 LP-----WEFGNLCNLQFLGVEGNPLEKQFLKILTEKS----VTGLIFYLRDNRPEIP----L------PHERRFIEINT 368 (727)
T ss_dssp CC-----SSTTSCTTCCCEECTTSCCCSHHHHHHHHHH----HHHHHHHHHHCCCCCC----C------CCC--------
T ss_pred cC-----hhhhcCCCccEEeCCCCccCCCChHHHhhcc----hhhhHHhhccCcccCc----C------ccccceeEeec
Confidence 43 3477888999999999998765333332110 1233466777766652 1 23566666666
Q ss_pred C
Q 007577 397 N 397 (597)
Q Consensus 397 n 397 (597)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.5e-13 Score=124.50 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=6.6
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|+|++|++
T Consensus 152 l~~L~~L~L~~N~l 165 (220)
T 2v70_A 152 LHSLSTLNLLANPF 165 (220)
T ss_dssp CTTCCEEECCSCCE
T ss_pred CCCCCEEEecCcCC
Confidence 34444445544443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-13 Score=130.38 Aligned_cols=151 Identities=19% Similarity=0.204 Sum_probs=84.0
Q ss_pred CEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHh
Q 007577 333 RELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALK 412 (597)
Q Consensus 333 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 412 (597)
+.++.+++.++. ++..+ .++|+.|++++|.++.. .+..+..+++|++|+|++|.++.. .+..+.
T Consensus 14 ~~v~c~~~~l~~-----iP~~l---~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLTE-----IPTNL---PETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQ 77 (220)
T ss_dssp TEEECTTSCCSS-----CCSSC---CTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTT
T ss_pred CEEEcCCCCcCc-----CCCcc---CcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhh
Confidence 567777776654 22111 13677777777777652 222455667777777777777653 233455
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
.+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+.... ..+..+++|++|++++|.++.....
T Consensus 78 ~l~~L~~L~Ls~N~l~~l~~----~~f~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--- 146 (220)
T 2v9t_B 78 GLRSLNSLVLYGNKITELPK----SLFEGLFSLQLLLLNANKINCLRV----DAFQDLHNLNLLSLYDNKLQTIAKG--- 146 (220)
T ss_dssp TCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCSCCCTT---
T ss_pred CCcCCCEEECCCCcCCccCH----hHccCCCCCCEEECCCCCCCEeCH----HHcCCCCCCCEEECCCCcCCEECHH---
Confidence 56677777777776664211 123445666777777666654321 2233445666666666665544322
Q ss_pred HHHhcCCCccEEEccCCCC
Q 007577 493 DMLRYNNTISILDLRANGL 511 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n~i 511 (597)
.+..+++|+.|++++|.+
T Consensus 147 -~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 147 -TFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -TTTTCTTCCEEECCSSCE
T ss_pred -HHhCCCCCCEEEeCCCCc
Confidence 123345566666666644
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-13 Score=126.32 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=18.3
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
..+++|++|+|++|.++.. .+..+..+++|++|+|++|.|+.
T Consensus 101 ~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCL----RVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCCEEECCCCCCCEe----CHHHcCCCCCCCEEECCCCcCCE
Confidence 3444455555555544432 11223334445555555554443
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-12 Score=115.66 Aligned_cols=135 Identities=16% Similarity=0.064 Sum_probs=89.3
Q ss_pred CCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHH
Q 007577 386 CKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSE 465 (597)
Q Consensus 386 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 465 (597)
.++|++|++++|.+++.. ++..+..+++|++|++++|.|+.. ..+..+++|++|++++|.++.. +..
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~----~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG----LDM 89 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC----CCH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH----HHH
Confidence 467888888888877211 334455678888888888888764 3456678888888888887653 223
Q ss_pred HHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHH---HHHHHHHhhcCccccEEEccCCCCC
Q 007577 466 VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGA---KCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~---~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
.+..+++|++|++++|.+++... ...+..+++|+.|++++|.+++... ..+..+ ++|+.|++++|.+.
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDIST---LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQ 160 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGG---GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSC
T ss_pred HHhhCCCCCEEeccCCccCcchh---HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChh
Confidence 34456788888888888776421 0234556778888888887765433 122222 66777777777654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-13 Score=124.89 Aligned_cols=133 Identities=23% Similarity=0.197 Sum_probs=62.5
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
.++.|++++|.++... ....+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.... ..+
T Consensus 33 ~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i----~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~ 101 (220)
T 2v70_A 33 YTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDI----EEGAFEGASGVNEILLTSNRLENVQH----KMF 101 (220)
T ss_dssp TCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCCCCG----GGG
T ss_pred CCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEE----CHHHhCCCCCCCEEECCCCccCccCH----hHh
Confidence 3455555555554410 001234555566666655555542 11234445555566665555554321 123
Q ss_pred hcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 440 KDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+++|++|+|++|.|+.... ..+..+++|++|++++|+++...+.. +..+++|+.|++++|.+
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGN----DSFIGLSSVRLLSLYDNQITTVAPGA----FDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCT----TSSTTCTTCSEEECTTSCCCCBCTTT----TTTCTTCCEEECCSCCE
T ss_pred cCCcCCCEEECCCCcCCeECH----hHcCCCccCCEEECCCCcCCEECHHH----hcCCCCCCEEEecCcCC
Confidence 344556666666655543211 12233455555666555555432222 23345566666666544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-12 Score=121.78 Aligned_cols=110 Identities=25% Similarity=0.253 Sum_probs=47.6
Q ss_pred HHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHH
Q 007577 297 ALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGA 376 (597)
Q Consensus 297 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 376 (597)
.+..+++|++|++++|.++..+ .+..+++|+.|++++|.++.. +.... .+++|+.|++++|.++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~------~~~~l~~L~~L~l~~n~l~~l--~~~~~----~~~~L~~L~L~~N~l~~--- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKKI--ENLDA----VADTLEELWISYNQIAS--- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC------CHHHHTTCCEEEEEEEEECSC--SSHHH----HHHHCSEEEEEEEECCC---
T ss_pred HHhcCCCCCEEECCCCCCcccc------ccccCCCCCEEECCCCCcccc--cchhh----cCCcCCEEECcCCcCCc---
Confidence 3444555555555555444321 233445555555555544321 11111 11245555555555554
Q ss_pred HHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 377 FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 377 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
++ .+..+++|++|++++|.+++... ...+..+++|++|++++|.+
T Consensus 108 --l~-~~~~l~~L~~L~l~~N~i~~~~~---~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 108 --LS-GIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp --HH-HHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSCHH
T ss_pred --CC-ccccCCCCCEEECCCCcCCchhH---HHHHhcCCCCCEEEecCCcc
Confidence 22 24444455555555555544211 02233444555555555544
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-13 Score=123.59 Aligned_cols=111 Identities=23% Similarity=0.254 Sum_probs=61.3
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
.+..+++|++|++++|.+++.. .+ ..+++|+.|++++|.++. ++..+..+++|++|++++|.+++.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~-----~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~N~l~~l-- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SL-----SGMENLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASL-- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CH-----HHHTTCCEEEEEEEEECS-----CSSHHHHHHHCSEEEEEEEECCCH--
T ss_pred HHhcCCCCCEEECCCCCCcccc--cc-----ccCCCCCEEECCCCCccc-----ccchhhcCCcCCEEECcCCcCCcC--
Confidence 3556677777777777665421 11 122366777777766654 334444455666666666666552
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
+ .+..+++|++|++++|.|++.... ..+..+++|++|++++|++.
T Consensus 109 ---~-~~~~l~~L~~L~l~~N~i~~~~~~---~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 109 ---S-GIEKLVNLRVLYMSNNKITNWGEI---DKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ---H-HHHHHHHSSEEEESEEECCCHHHH---HHHTTTTTCSEEEECSCHHH
T ss_pred ---C-ccccCCCCCEEECCCCcCCchhHH---HHHhcCCCCCEEEecCCccc
Confidence 1 233445666666666666653221 23444566666666666543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-11 Score=112.57 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|++|++++|.+++. ..+..+++|++|++++|.|+.... ..+..+++|++|++++|.+++... + ..+
T Consensus 43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~--~-~~l 109 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGD--L-DPL 109 (176)
T ss_dssp CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECS----CHHHHCTTCCEEECCSCCCCCGGG--G-GGG
T ss_pred CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCc----chhhcCCCCCEEECCCCcCCcchh--h-Hhh
Confidence 444444444444431 223334445555555554443211 111233555555555555433110 0 123
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCC
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~ 512 (597)
..+++|++|++++|.++.... .-...+..+++|+.||+++|.+.
T Consensus 110 ~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVTNKKH-YRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGCTTCCEEECCSSGGGGSTT-HHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEEecCCCCCCcHh-HHHHHHHHCCccceeCCCcCCHH
Confidence 334455555555555433211 11112334455555555555443
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-11 Score=111.30 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 301 NSTIRSLHLNGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 301 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
+.+|++|++++|.++... . +..+ ++|++|++++|.+++. ..+ ..+++|+.|++++|.++.. .
T Consensus 18 ~~~L~~L~l~~n~l~~i~-----~-~~~~~~~L~~L~Ls~N~l~~~------~~l-~~l~~L~~L~Ls~N~l~~~----~ 80 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIE-----N-LGATLDQFDAIDFSDNEIRKL------DGF-PLLRRLKTLLVNNNRICRI----G 80 (176)
T ss_dssp TTSCEEEECTTSCCCSCC-----C-GGGGTTCCSEEECCSSCCCEE------CCC-CCCSSCCEEECCSSCCCEE----C
T ss_pred cCCceEEEeeCCCCchhH-----H-hhhcCCCCCEEECCCCCCCcc------ccc-ccCCCCCEEECCCCccccc----C
Confidence 455566666665554321 1 1222 2555555555555441 111 2333455555555554431 1
Q ss_pred HHHHHcCCCCcEEEccCCCCC
Q 007577 380 AEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+..+++|++|++++|.++
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLV 101 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCC
T ss_pred cchhhcCCCCCEEECCCCcCC
Confidence 112244445555555555444
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-13 Score=138.60 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=51.9
Q ss_pred cEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHH-HHHH
Q 007577 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIA-ELLK 271 (597)
Q Consensus 193 ~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~-~~l~ 271 (597)
+.++.++++++.. +..+ .+++++|+|++|+|+.... ..+..+++|++|+|++|.+... +. ..+.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~i~~~----i~~~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEV----IEADVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEECT----TSSTTCTTCCEEEEECCTTCCE----ECTTSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcCH----HHHcCCCCCCEEECcCCCCCCc----cChhHhh
Confidence 4566666666532 1111 1357777777777764321 1234456777777777765331 11 1223
Q ss_pred cCCCccE-EEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh
Q 007577 272 NNSILRV-LELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316 (597)
Q Consensus 272 ~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 316 (597)
+++++.+ +.+++|+++.-. +..+..+++|++|++++|.+..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~----~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYIN----PEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCTTCCEEEEEEETTCCEEC----TTSBCCCTTCCEEEEEEECCSS
T ss_pred cchhhhhhhcccCCcccccC----chhhhhcccccccccccccccc
Confidence 3344443 444455554211 2233445566666666655543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-12 Score=131.45 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=7.7
Q ss_pred CCCccEEEccCCCCC
Q 007577 217 NIALKTLNLSGNPIG 231 (597)
Q Consensus 217 ~~~L~~L~Ls~n~l~ 231 (597)
+++|+.|||++|++.
T Consensus 48 l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK 62 (329)
T ss_dssp CTTCCEEEEEEEEEC
T ss_pred hccCeEEecCcceeE
Confidence 344555555555443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-13 Score=136.81 Aligned_cols=239 Identities=13% Similarity=0.034 Sum_probs=151.5
Q ss_pred CEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCCh-HHHHHHHHHhh
Q 007577 249 ERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGA-LGANALAKGLE 327 (597)
Q Consensus 249 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~ 327 (597)
+.++.++++++.. +..+ .+++++|+|++|+|+.-. ..+|.++++|++|+|++|.+.. .+. .++.
T Consensus 12 ~~v~C~~~~Lt~i-----P~~l--~~~l~~L~Ls~N~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~ 76 (350)
T 4ay9_X 12 RVFLCQESKVTEI-----PSDL--PRNAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDVLEVIEA----DVFS 76 (350)
T ss_dssp TEEEEESTTCCSC-----CTTC--CTTCSEEEEESCCCSEEC----TTSSTTCTTCCEEEEECCTTCCEECT----TSBC
T ss_pred CEEEecCCCCCcc-----CcCc--CCCCCEEEccCCcCCCcC----HHHHcCCCCCCEEECcCCCCCCccCh----hHhh
Confidence 6788888888863 3222 257999999999986321 2346678999999999998643 222 2356
Q ss_pred cCCCCCE-EEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHH
Q 007577 328 GNKSLRE-LHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAE 405 (597)
Q Consensus 328 ~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 405 (597)
+++++.+ +.+++|++... .......+++|+.|++++|.+... ....+....++..|++.++ .+.....
T Consensus 77 ~L~~l~~~l~~~~N~l~~l-----~~~~f~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~l~~l~l~~~~~i~~l~~- 146 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYI-----NPEAFQNLPNLQYLLISNTGIKHL----PDVHKIHSLQKVLLDIQDNINIHTIER- 146 (350)
T ss_dssp SCTTCCEEEEEEETTCCEE-----CTTSBCCCTTCCEEEEEEECCSSC----CCCTTCCBSSCEEEEEESCTTCCEECT-
T ss_pred cchhhhhhhcccCCccccc-----CchhhhhccccccccccccccccC----Cchhhcccchhhhhhhccccccccccc-
Confidence 7778775 55666777653 222235667899999999988762 1122334556778888654 6654211
Q ss_pred HHHHHHhcC-CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcC-CCCCHHHHHHHHHHHhhCCCcCEEecCCCCC
Q 007577 406 KIADALKQN-RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAY-NPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 406 ~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (597)
..+..+ ..++.|++++|+|+... .......+|++|++++ |.++.... ..+..+++|++|++++|+|
T Consensus 147 ---~~f~~~~~~l~~L~L~~N~i~~i~-----~~~f~~~~L~~l~l~~~n~l~~i~~----~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 147 ---NSFVGLSFESVILWLNKNGIQEIH-----NSAFNGTQLDELNLSDNNNLEELPN----DVFHGASGPVILDISRTRI 214 (350)
T ss_dssp ---TSSTTSBSSCEEEECCSSCCCEEC-----TTSSTTEEEEEEECTTCTTCCCCCT----TTTTTEECCSEEECTTSCC
T ss_pred ---cchhhcchhhhhhccccccccCCC-----hhhccccchhHHhhccCCcccCCCH----HHhccCcccchhhcCCCCc
Confidence 122222 46889999999988632 2223346799999975 55554221 2345568999999999998
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCC
Q 007577 484 GASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFN 538 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n 538 (597)
+...... ..+|+.|.+.++ .+.... .+... ++|+.++++++
T Consensus 215 ~~lp~~~-------~~~L~~L~~l~~~~l~~lP--~l~~l-----~~L~~l~l~~~ 256 (350)
T 4ay9_X 215 HSLPSYG-------LENLKKLRARSTYNLKKLP--TLEKL-----VALMEASLTYP 256 (350)
T ss_dssp CCCCSSS-------CTTCCEEECTTCTTCCCCC--CTTTC-----CSCCEEECSCH
T ss_pred CccChhh-------hccchHhhhccCCCcCcCC--CchhC-----cChhhCcCCCC
Confidence 7653321 356777776665 333321 11111 67899998764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-11 Score=124.06 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=73.4
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCC--HHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGIT--AAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCL 238 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 238 (597)
+.++++|.++++ +...++..+... +++|+.|+|++|+|. ... .. ..+.++.+.+..|.+.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~---l~~L~~LdLs~n~i~~~~~~----~~---~~~~~~~~~~~~~~I~~------ 86 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDE---FPSLKVLDISNAEIKMYSGK----AG---TYPNGKFYIYMANFVPA------ 86 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHS---CTTCCEEEEEEEEECCEEES----SS---SSGGGCCEEECTTEECT------
T ss_pred hCceeEEEEecc-ccHHHHHHHHHh---hccCeEEecCcceeEEecCc----cc---cccccccccccccccCH------
Confidence 457889999875 455555544432 689999999999876 111 00 11124556666665554
Q ss_pred HHHHhc--------CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcC
Q 007577 239 CDILVD--------NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310 (597)
Q Consensus 239 ~~~l~~--------~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 310 (597)
..+.. |++|++|+|.+ .++..+. ..+..|++|+.+++.+|.+..-+ ..+|..+.++..+.+.
T Consensus 87 -~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~----~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 87 -YAFSNVVNGVTKGKQTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLL----PEALADSVTAIFIPLG 156 (329)
T ss_dssp -TTTEEEETTEEEECTTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEEC----TTSSCTTTCEEEECTT
T ss_pred -HHhcccccccccccCCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccc----hhhhcCCCceEEecCc
Confidence 23445 78888888887 6665422 23455678888888887664322 2233345555555554
Q ss_pred C
Q 007577 311 G 311 (597)
Q Consensus 311 ~ 311 (597)
.
T Consensus 157 ~ 157 (329)
T 3sb4_A 157 S 157 (329)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.8e-10 Score=99.14 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=56.5
Q ss_pred CCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHHHHhhCCCcCEEecCCCC-CChhHHHHHH
Q 007577 415 RTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSEVLKFHGNINTLKLGWCQ-IGASGAEFVA 492 (597)
Q Consensus 415 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 492 (597)
..|++||+++|.|++.++..+ ..|++|++|+|++| .|+|.++..+...-..+++|++|+|++|. |++.+...+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777777777777765543 34677777777777 47777766665421112356666666663 6666655432
Q ss_pred HHHhcCCCccEEEccCC-CCChHH
Q 007577 493 DMLRYNNTISILDLRAN-GLRDEG 515 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n-~i~~~~ 515 (597)
.+++|++|++++| .|++.+
T Consensus 137 ----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----GCTTCCEEEEESCTTCCCHH
T ss_pred ----cCCCCCEEECCCCCCCCchH
Confidence 3466666666666 466644
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-10 Score=99.02 Aligned_cols=92 Identities=13% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC-CCCHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN-PIGADGAKALSE 465 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 465 (597)
+|++||+++|.|++.|+..+ ..+++|++|+|++| .|++.++..++..-..+++|++|+|++| .|++.|+..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-
Confidence 56677777666666665443 34666777777766 4666666666542001245677777666 36666665543
Q ss_pred HHhhCCCcCEEecCCCC-CChhH
Q 007577 466 VLKFHGNINTLKLGWCQ-IGASG 487 (597)
Q Consensus 466 ~l~~~~~L~~L~L~~n~-i~~~~ 487 (597)
.+++|++|++++|. +++.+
T Consensus 137 ---~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 ---HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ---GCTTCCEEEEESCTTCCCHH
T ss_pred ---cCCCCCEEECCCCCCCCchH
Confidence 35667777776664 65543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-11 Score=109.88 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=27.0
Q ss_pred ccceeeccCCCCChhHHHHHHH--HHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAE--YIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+++.|++++|.++. ++. .+..+++|++|+|++|.++.. .+..+..+++|++|+|++|+|+.
T Consensus 30 ~l~~L~l~~n~i~~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~ 92 (192)
T 1w8a_A 30 HTTELLLNDNELGR-----ISSDGLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKE 92 (192)
T ss_dssp TCSEEECCSCCCCS-----BCCSCSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCE
T ss_pred CCCEEECCCCcCCc-----cCCccccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCc
Confidence 45555555555544 111 134445555555555544432 12233334444444444444443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.4e-11 Score=107.86 Aligned_cols=109 Identities=23% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHH
Q 007577 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADA 410 (597)
Q Consensus 331 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 410 (597)
++++|++++|.++..... .....+++|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....
T Consensus 30 ~l~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~ 97 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSD----GLFGRLPHLVKLELKRNQLTGI----EPNAFEGASHIQELQLGENKIKEI----SNKM 97 (192)
T ss_dssp TCSEEECCSCCCCSBCCS----CSGGGCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSCCCCEE----CSSS
T ss_pred CCCEEECCCCcCCccCCc----cccccCCCCCEEECCCCCCCCc----CHhHcCCcccCCEEECCCCcCCcc----CHHH
Confidence 556666666655432110 0112334566666666655541 233445555666666666655542 1122
Q ss_pred HhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCC
Q 007577 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPI 455 (597)
Q Consensus 411 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 455 (597)
+..+++|++|+|++|+|+... ...+..+++|++|+|++|++
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVM----PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp STTCTTCCEEECCSSCCCEEC----TTSSTTCTTCCEEECTTCCB
T ss_pred hcCCCCCCEEECCCCcCCeeC----HHHhhcCCCCCEEEeCCCCc
Confidence 334455555555555554421 11223334555555555544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-11 Score=109.58 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=26.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
+|+.|++++|.++. ++..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|.|+.
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i----~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTL----SNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEe----CHhHccCCCCCCEEECCCCccCE
Confidence 45555555555443 233344445555555555544432 11223334444444444444443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-10 Score=106.87 Aligned_cols=107 Identities=20% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVL 467 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 467 (597)
+|++|++++|.++. ++..+..+++|++|+|++|.|+.... ..+..+++|++|+|++|.|+.... ..+
T Consensus 32 ~l~~L~L~~n~i~~-----ip~~~~~l~~L~~L~Ls~N~i~~i~~----~~f~~l~~L~~L~Ls~N~l~~i~~----~~f 98 (193)
T 2wfh_A 32 DVTELYLDGNQFTL-----VPKELSNYKHLTLIDLSNNRISTLSN----QSFSNMTQLLTLILSYNRLRCIPP----RTF 98 (193)
T ss_dssp TCCEEECCSSCCCS-----CCGGGGGCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCT----TTT
T ss_pred CCCEEECCCCcCch-----hHHHhhcccCCCEEECCCCcCCEeCH----hHccCCCCCCEEECCCCccCEeCH----HHh
Confidence 45555555555543 22334445555555555555544211 123334555555555555443211 122
Q ss_pred hhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 468 KFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 468 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+++|++|+|++|.|+..... .+..+++|+.|++++|.+
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDISVVPEG----AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCTTCCEEECCSSCCCBCCTT----TTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCCCCeeChh----hhhcCccccEEEeCCCCe
Confidence 3345555555555555433221 122335555555555543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-10 Score=100.86 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=6.7
Q ss_pred CCCcCEEECcCCCC
Q 007577 442 NSVITSLDLAYNPI 455 (597)
Q Consensus 442 ~~~L~~L~Ls~n~i 455 (597)
+++|++|++++|++
T Consensus 123 l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 123 LTSLQKIWLHTNPW 136 (177)
T ss_dssp CTTCCEEECCSSCB
T ss_pred CcccCEEEecCCCe
Confidence 34455555555444
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-09 Score=99.39 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=39.9
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 463 (597)
..+++|++|++++|.++.. ....+..+++|++|++++|.|+... ...+..+++|++|++++|.++....
T Consensus 49 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~--- 117 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSL----PDGVFDKLTKLTILYLHENKLQSLP----NGVFDKLTQLKELALDTNQLKSVPD--- 117 (177)
T ss_dssp TTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCSCCCT---
T ss_pred cCcccccEEECCCCcceEe----ChhHccCCCccCEEECCCCCccccC----HHHhhCCcccCEEECcCCcceEeCH---
Confidence 3444455555554444431 1112233445555555555544321 1112334555555555555542211
Q ss_pred HHHHhhCCCcCEEecCCCCCCh
Q 007577 464 SEVLKFHGNINTLKLGWCQIGA 485 (597)
Q Consensus 464 ~~~l~~~~~L~~L~L~~n~i~~ 485 (597)
..+..+++|++|++++|.+..
T Consensus 118 -~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 118 -GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -TTTTTCTTCCEEECCSSCBCC
T ss_pred -HHhcCCcccCEEEecCCCeec
Confidence 112334566666666665543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.57 E-value=7e-09 Score=93.15 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.1
Q ss_pred hcCCCCCEEEccCCCCC
Q 007577 327 EGNKSLRELHLHGNSIG 343 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~ 343 (597)
..+++|++|++++|+++
T Consensus 51 ~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 51 DRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TTCTTCSEEECCSSCCC
T ss_pred cCcccCCEEECCCCCcC
Confidence 34444555555555443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.54 E-value=6.8e-09 Score=93.23 Aligned_cols=85 Identities=19% Similarity=0.188 Sum_probs=41.7
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|+|+.... ..+
T Consensus 31 ~l~~L~L~~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~ 98 (170)
T 3g39_A 31 TTQVLYLYDNQITKL----EPGVFDRLTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDNQLKSIPR----GAF 98 (170)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEcCCCcCCcc----ChhhhcCcccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCCccCEeCH----HHh
Confidence 455555555555541 233345555566666666655542 11123345555666666655554211 123
Q ss_pred hcCCCcCEEECcCCCCC
Q 007577 440 KDNSVITSLDLAYNPIG 456 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|++.
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 34455555555555543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-08 Score=89.41 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=26.8
Q ss_pred hcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 327 EGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
.++++|++|+|++|+++.. .......+++|+.|+|++|.++.. .+..+..+++|++|+|++|.+.
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i-----~~~~~~~l~~L~~L~L~~N~l~~l----~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAI-----PTGVFDKLTQLTQLDLNDNHLKSI----PRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCSEEECCSSCBC
T ss_pred cCCcCCCEEECCCCCCCcc-----ChhHhCCcchhhEEECCCCcccee----CHHHhccccCCCEEEeCCCCcc
Confidence 3444555555555544431 111112233444444444444431 1112344445555555555443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-08 Score=90.82 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=41.4
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|+|++|.++.. .+..+..+++|++|+|++|.|+.. ....+..+++|++|+|++|+|+.... ..+
T Consensus 34 ~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~i----~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~ 101 (174)
T 2r9u_A 34 DKQRLWLNNNQITKL----EPGVFDHLVNLQQLYFNSNKLTAI----PTGVFDKLTQLTQLDLNDNHLKSIPR----GAF 101 (174)
T ss_dssp TCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCT----TTT
T ss_pred CCcEEEeCCCCcccc----CHHHhcCCcCCCEEECCCCCCCcc----ChhHhCCcchhhEEECCCCccceeCH----HHh
Confidence 455555655555541 233445555666666666655541 11122345555555555555553211 113
Q ss_pred hcCCCcCEEECcCCCCC
Q 007577 440 KDNSVITSLDLAYNPIG 456 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|++.
T Consensus 102 ~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 102 DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTCTTCSEEECCSSCBC
T ss_pred ccccCCCEEEeCCCCcc
Confidence 33455555555555543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.21 E-value=5.9e-09 Score=107.19 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=169.7
Q ss_pred CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHH
Q 007577 245 NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAK 324 (597)
Q Consensus 245 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 324 (597)
+..++.+.+.+. ++..+..+| .++ +|+.+.+..+ ++.-+ ..+|.. .+|+.+.+.. .+...+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF----~~~-~L~~i~l~~~-i~~I~----~~aF~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAF----RNS-QIAKVVLNEG-LKSIG----DMAFFN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTT----TTC-CCSEEECCTT-CCEEC----TTTTTT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEehHhhc----ccC-CccEEEeCCC-ccEEC----HHhcCC-CCceEEEeCC-CccEehH----H
Confidence 467788887653 443322223 333 6999999876 43222 122333 5799999986 4554444 4
Q ss_pred HhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHH
Q 007577 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGA 404 (597)
Q Consensus 325 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 404 (597)
+|.+|++|+.+++.+|+++..+. ..+. +.+|+.+.+..+ +..- -..+|..|++|+.+++..+ ++..+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~-----~aF~-~~~L~~l~lp~~-l~~I----~~~aF~~~~~L~~l~l~~~-l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA-----STFV-YAGIEEVLLPVT-LKEI----GSQAFLKTSQLKTIEIPEN-VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT-----TTTT-TCCCSEEECCTT-CCEE----CTTTTTTCTTCCCEECCTT-CCEECT
T ss_pred HhhCcccCCeeecCCCcceEech-----hhEe-ecccCEEEeCCc-hhee----hhhHhhCCCCCCEEecCCC-ccCccc
Confidence 57789999999999988776322 2223 358999999865 4441 1245778999999999876 333211
Q ss_pred HHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH-HHHHHhhCCCcCEEecCCCCC
Q 007577 405 EKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 405 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~L~~n~i 483 (597)
.++.. .+|+.+.+.+ .++..+. ..+..|++|+.+++.+|.+....... -...+..|++|+.+.+.+ .+
T Consensus 243 ----~aF~~-~~L~~i~lp~-~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i 311 (401)
T 4fdw_A 243 ----EAFRE-SGITTVKLPN-GVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI 311 (401)
T ss_dssp ----TTTTT-CCCSEEEEET-TCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC
T ss_pred ----ccccc-CCccEEEeCC-CccEECh----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce
Confidence 22333 7899999954 4544322 34677899999999888654111000 123556789999999984 46
Q ss_pred ChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEE
Q 007577 484 GASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSL 563 (597)
Q Consensus 484 ~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L 563 (597)
+..+.. ++..|++|+.++|.++ ++..+..+|.. .+|+++++++|.+.......+. ..+ ..++.|
T Consensus 312 ~~I~~~----aF~~c~~L~~l~lp~~-l~~I~~~aF~~------~~L~~l~l~~n~~~~l~~~~F~----~~~-~~l~~l 375 (401)
T 4fdw_A 312 RILGQG----LLGGNRKVTQLTIPAN-VTQINFSAFNN------TGIKEVKVEGTTPPQVFEKVWY----GFP-DDITVI 375 (401)
T ss_dssp CEECTT----TTTTCCSCCEEEECTT-CCEECTTSSSS------SCCCEEEECCSSCCBCCCSSCC----CSC-TTCCEE
T ss_pred EEEhhh----hhcCCCCccEEEECcc-ccEEcHHhCCC------CCCCEEEEcCCCCccccccccc----CCC-CCccEE
Confidence 554433 4567799999999665 44443333322 3699999999977643322221 111 147888
Q ss_pred EcccCccc
Q 007577 564 NLANNFLT 571 (597)
Q Consensus 564 ~L~~N~i~ 571 (597)
++..+.+.
T Consensus 376 ~vp~~~~~ 383 (401)
T 4fdw_A 376 RVPAESVE 383 (401)
T ss_dssp EECGGGHH
T ss_pred EeCHHHHH
Confidence 88876543
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9.7e-09 Score=105.56 Aligned_cols=268 Identities=12% Similarity=0.172 Sum_probs=144.1
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCD 240 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 240 (597)
+..++++.+... +...+ ..+|..+ +|+.+.+..+ ++..+..+| .. .+|+++++.. .+...+. .
T Consensus 112 ~~~l~~i~ip~~-i~~I~----~~aF~~~-~L~~i~l~~~-i~~I~~~aF----~~-~~L~~i~lp~-~l~~I~~----~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIP----KDAFRNS-QIAKVVLNEG-LKSIGDMAF----FN-STVQEIVFPS-TLEQLKE----D 174 (401)
T ss_dssp CSSCSEEECCTT-CCEEC----TTTTTTC-CCSEEECCTT-CCEECTTTT----TT-CCCCEEECCT-TCCEECS----S
T ss_pred cCCccEEEECCc-cCEeh----HhhcccC-CccEEEeCCC-ccEECHHhc----CC-CCceEEEeCC-CccEehH----H
Confidence 355666666542 21111 1233433 6777777655 443333333 23 3577777765 3333221 2
Q ss_pred HHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHH
Q 007577 241 ILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGAN 320 (597)
Q Consensus 241 ~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 320 (597)
.+..|.+|+.+++.+|.++..+..++. +.+|+.+.+..+ ++.-+ ..+|..|++|+.+.+..+ +...+.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~-l~~I~----~~aF~~~~~L~~l~l~~~-l~~I~~- 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT-LKEIG----SQAFLKTSQLKTIEIPEN-VSTIGQ- 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT-CCEEC----TTTTTTCTTCCCEECCTT-CCEECT-
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc-hheeh----hhHhhCCCCCCEEecCCC-ccCccc-
Confidence 234467788888877776654333332 467777777644 32211 224456777888887764 343333
Q ss_pred HHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHH-HHHHHHHcCCCCcEEEccCCCC
Q 007577 321 ALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF-HVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 321 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
.+|.+ .+|+.+.+.. .+.. +....+..+.+|+.+++.++.+...... .-...|..|++|+.++|..+ +
T Consensus 243 ---~aF~~-~~L~~i~lp~-~i~~-----I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i 311 (401)
T 4fdw_A 243 ---EAFRE-SGITTVKLPN-GVTN-----IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I 311 (401)
T ss_dssp ---TTTTT-CCCSEEEEET-TCCE-----ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C
T ss_pred ---ccccc-CCccEEEeCC-CccE-----EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e
Confidence 22444 5778887743 3333 2223335566788888877654410000 01235677888888888744 4
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhC-CCcCEEec
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFH-GNINTLKL 478 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L 478 (597)
+..+ ..++..+++|+.+.|..+ ++..+. .++..| +|+.+++.+|.+..... ..+..+ .+++.|.+
T Consensus 312 ~~I~----~~aF~~c~~L~~l~lp~~-l~~I~~----~aF~~~-~L~~l~l~~n~~~~l~~----~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 312 RILG----QGLLGGNRKVTQLTIPAN-VTQINF----SAFNNT-GIKEVKVEGTTPPQVFE----KVWYGFPDDITVIRV 377 (401)
T ss_dssp CEEC----TTTTTTCCSCCEEEECTT-CCEECT----TSSSSS-CCCEEEECCSSCCBCCC----SSCCCSCTTCCEEEE
T ss_pred EEEh----hhhhcCCCCccEEEECcc-ccEEcH----HhCCCC-CCCEEEEcCCCCccccc----ccccCCCCCccEEEe
Confidence 4321 134566788888888654 444321 235667 89999998886543211 111222 35667766
Q ss_pred CCCC
Q 007577 479 GWCQ 482 (597)
Q Consensus 479 ~~n~ 482 (597)
-.+.
T Consensus 378 p~~~ 381 (401)
T 4fdw_A 378 PAES 381 (401)
T ss_dssp CGGG
T ss_pred CHHH
Confidence 6554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3.9e-06 Score=80.22 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=17.8
Q ss_pred cccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 359 GKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 359 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
++|+.|+|++|.++... .++..+..+++|+.|+|++|.|++
T Consensus 170 ~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCC
Confidence 34444444444444310 022233445555555555555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.01 E-value=5.7e-07 Score=90.68 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=52.8
Q ss_pred EEEccCC-CCChHHHHHHHHhhhcCccccceeeccC-CCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHH
Q 007577 334 ELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL 411 (597)
Q Consensus 334 ~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 411 (597)
.++.+++ +++. ++. + ....+|+.|+|++ |.++.. .+..|..+++|++|+|++|.|+.. .+..+
T Consensus 12 ~v~~~~~n~l~~-----ip~-l-~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH-L-PGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp CEECCSSCCCTT-----TTT-S-CSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred EEEcCCCCCCCc-----cCC-C-CCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCcccee----CHHHh
Confidence 4556555 5554 222 1 2334566666664 666551 223455666666666666666553 22334
Q ss_pred hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 412 KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 412 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
..+++|++|+|++|+|+.... ..+.. ..|+.|+|.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~----~~~~~-~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSW----KTVQG-LSLQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCS----TTTCS-CCCCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCccceeCH----HHccc-CCceEEEeeCCCcc
Confidence 556666666666666654211 11111 22666666666554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-06 Score=87.67 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=39.9
Q ss_pred EEEecCC-CCChHHHHHHHHHHHcCCCccEEEecc-CCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhh
Q 007577 250 RLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLE 327 (597)
Q Consensus 250 ~L~Ls~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 327 (597)
.++++++ +++. ++. +..+++|++|+|++ |.|+... ...|..+++|+.|+|++|.++.... ..|.
T Consensus 12 ~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~~----~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~ 77 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHLE----LRDLRGLGELRNLTIVKSGLRFVAP----DAFH 77 (347)
T ss_dssp CEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEEC----GGGSCSCCCCSEEECCSSCCCEECT----TGGG
T ss_pred EEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCcC----hhHhccccCCCEEECCCCccceeCH----HHhc
Confidence 3455555 5554 333 44445566666664 5554211 1233445555555555555554332 2344
Q ss_pred cCCCCCEEEccCCCCC
Q 007577 328 GNKSLRELHLHGNSIG 343 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i~ 343 (597)
++++|++|+|++|.++
T Consensus 78 ~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCCEEECCSSCCS
T ss_pred CCcCCCEEeCCCCccc
Confidence 5555555555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-08 Score=103.47 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=7.2
Q ss_pred hccCCCccEEEecc
Q 007577 186 LGYNQTAEEVSFAA 199 (597)
Q Consensus 186 l~~~~~L~~L~L~~ 199 (597)
|..|.+|+.+++.+
T Consensus 90 F~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 90 FENCSKLEIINIPD 103 (394)
T ss_dssp TTTCTTCCEECCCT
T ss_pred hhCCCCCcEEEeCC
Confidence 44455555555543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-08 Score=102.95 Aligned_cols=308 Identities=13% Similarity=0.172 Sum_probs=144.0
Q ss_pred HhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHH
Q 007577 185 SLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAK 264 (597)
Q Consensus 185 ~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~ 264 (597)
+|..|.+|+++.+..+ ++..+- .++..|++|+.+++..+ ++..+. ..+..|.+|+.+.+..+ +...+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGE----FAFENCSKLEIINIPDS-VKMIGR----CTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECT----TTTTTCTTCCEECCCTT-CCEECT----TTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred HhhCCCCceEEEeCCC-ccCcch----hHhhCCCCCcEEEeCCC-ceEccc----hhhcccccchhhcccCc-eeeecce
Confidence 5667888999998754 443322 34567889999999754 333222 22344677887766543 2222111
Q ss_pred HHHHHHHcCCCccEEEeccCC-CChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCC
Q 007577 265 AIAELLKNNSILRVLELNNNM-IDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 265 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 343 (597)
+ +..+..++........ +. ..++..|.+|+.+.+..+. ...+. .++.+|.+|+.+.+..+ +.
T Consensus 135 a----F~~~~~~~~~~~~~~~~i~-------~~aF~~c~~L~~i~l~~~~-~~I~~----~~F~~c~~L~~i~l~~~-~~ 197 (394)
T 4fs7_A 135 A----FKGCDFKEITIPEGVTVIG-------DEAFATCESLEYVSLPDSM-ETLHN----GLFSGCGKLKSIKLPRN-LK 197 (394)
T ss_dssp T----TTTCCCSEEECCTTCCEEC-------TTTTTTCTTCCEEECCTTC-CEECT----TTTTTCTTCCBCCCCTT-CC
T ss_pred e----eecccccccccCccccccc-------hhhhcccCCCcEEecCCcc-ceecc----ccccCCCCceEEEcCCC-ce
Confidence 1 2222222222211111 11 1234566777777776542 22222 23556777777777554 22
Q ss_pred hHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC--CCCcHHHHHHHHHHhcCCCccEEE
Q 007577 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN--DIGDEGAEKIADALKQNRTITTID 421 (597)
Q Consensus 344 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~ 421 (597)
. +.......+..|+.+.+..+...- ......+.+|+.+.+... .+.+ .++..+..|+.+.
T Consensus 198 ~-----I~~~~F~~~~~L~~i~~~~~~~~i------~~~~~~~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~ 259 (394)
T 4fs7_A 198 I-----IRDYCFAECILLENMEFPNSLYYL------GDFALSKTGVKNIIIPDSFTELGK-------SVFYGCTDLESIS 259 (394)
T ss_dssp E-----ECTTTTTTCTTCCBCCCCTTCCEE------CTTTTTTCCCCEEEECTTCCEECS-------STTTTCSSCCEEE
T ss_pred E-----eCchhhccccccceeecCCCceEe------ehhhcccCCCceEEECCCceeccc-------ccccccccceeEE
Confidence 1 112222344456666665542211 011223455666666443 1211 1233455666666
Q ss_pred ccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCc
Q 007577 422 LGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTI 501 (597)
Q Consensus 422 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 501 (597)
+..+...- + ...+..|..++.+.+..+.+.+ ..+..|.+|+.+.+..+ +...+. .++..|.+|
T Consensus 260 ~~~~~~~i-~----~~~F~~~~~l~~~~~~~~~i~~-------~~F~~~~~L~~i~l~~~-i~~I~~----~aF~~c~~L 322 (394)
T 4fs7_A 260 IQNNKLRI-G----GSLFYNCSGLKKVIYGSVIVPE-------KTFYGCSSLTEVKLLDS-VKFIGE----EAFESCTSL 322 (394)
T ss_dssp ECCTTCEE-C----SCTTTTCTTCCEEEECSSEECT-------TTTTTCTTCCEEEECTT-CCEECT----TTTTTCTTC
T ss_pred cCCCccee-e----ccccccccccceeccCceeecc-------ccccccccccccccccc-cceech----hhhcCCCCC
Confidence 65542210 0 1123445556665555443322 12334556666666443 222221 123445666
Q ss_pred cEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCceeEEEcccC
Q 007577 502 SILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANN 568 (597)
Q Consensus 502 ~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~N 568 (597)
+.++|.++ ++..+..+|..+ .+|+.+++..+ ++..+..++..+ . +|+++++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF~~C----~--~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGC-----TSLSNINFPLS-LRKIGANAFQGC----I--NLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTC-----TTCCEECCCTT-CCEECTTTBTTC----T--TCCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCC-----CCCCEEEECcc-ccEehHHHhhCC----C--CCCEEEECCC
Confidence 66666433 333333333332 45666666554 433333333222 2 2666666543
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=73.51 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=49.2
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH---HH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD---GA 460 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---~~ 460 (597)
..+++|+.|+|++|.|++. ..+...+..+++|++|+|++|.|++. ..+.. +..+ +|++|+|++|++... ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGL-KLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTS-CCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccC-CcceEEccCCcCccccCcch
Confidence 5678888888888887752 11333344567777777777777764 11211 2222 677777777766531 11
Q ss_pred HHHHHHHhhCCCcCEEe
Q 007577 461 KALSEVLKFHGNINTLK 477 (597)
Q Consensus 461 ~~l~~~l~~~~~L~~L~ 477 (597)
......+..+++|+.|+
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 22223344455555554
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.31 E-value=7.1e-06 Score=84.19 Aligned_cols=312 Identities=10% Similarity=0.158 Sum_probs=154.7
Q ss_pred CCcEEEcCCC--CCCHHHHHHHHHHhccCCCccEEEeccCC---CCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHH
Q 007577 163 AFSSVDMSGR--NFGDEGLFFLAESLGYNQTAEEVSFAANG---ITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKC 237 (597)
Q Consensus 163 ~L~~L~Ls~~--~l~~~~~~~l~~~l~~~~~L~~L~L~~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 237 (597)
.|+++.+..+ .|++ .+|..|.+|+.+.+..+. ++..+-. ++..|.+|+.+.+..+ +...+.
T Consensus 65 ~L~sI~iP~svt~Ig~-------~AF~~C~~L~~i~~~~n~p~~l~~Ig~~----aF~~c~~L~~i~~~~~-~~~I~~-- 130 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGS-------NAFYNCTSLKRVTIQDNKPSCVKKIGRQ----AFMFCSELTDIPILDS-VTEIDS-- 130 (394)
T ss_dssp CCCEEEECTTCCEECT-------TTTTTCTTCCEEEEGGGCCCCCCEECTT----TTTTCTTCCBCGGGTT-CSEECT--
T ss_pred cCEEEEECCCeeEEhH-------HHhhCCccCceEeecCCCCCeeeEechh----hchhcccceeeccCCc-cceehh--
Confidence 4777777643 2332 356678888888887652 4433322 3446677777766543 222211
Q ss_pred HHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChH
Q 007577 238 LCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317 (597)
Q Consensus 238 l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 317 (597)
..+..|.+|+.+.+..+. ...+ ...+..+..|+.+.+..+ ++.- ......+..|+.+.+..+. ...
T Consensus 131 --~aF~~c~~L~~i~lp~~~-~~I~----~~~F~~c~~L~~i~~~~~-~~~I-----~~~aF~~~~l~~i~ip~~~-~~i 196 (394)
T 4gt6_A 131 --EAFHHCEELDTVTIPEGV-TSVA----DGMFSYCYSLHTVTLPDS-VTAI-----EERAFTGTALTQIHIPAKV-TRI 196 (394)
T ss_dssp --TTTTTCTTCCEEECCTTC-CEEC----TTTTTTCTTCCEEECCTT-CCEE-----CTTTTTTCCCSEEEECTTC-CEE
T ss_pred --hhhhhhccccccccccee-eeec----ccceecccccccccccce-eeEe-----ccccccccceeEEEECCcc-ccc
Confidence 223346788888886432 2211 123445677888877654 2111 1111134577777776542 222
Q ss_pred HHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHh-------h--hcCccccceeeccCCCCChhHHHHHHHHHHcCCC
Q 007577 318 GANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSG-------L--SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388 (597)
Q Consensus 318 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-------l--~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 388 (597)
+. .++..|..++.............-. +... + ......+..+.+... +... -..++..|.+
T Consensus 197 ~~----~af~~c~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i----~~~aF~~c~~ 266 (394)
T 4gt6_A 197 GT----NAFSECFALSTITSDSESYPAIDNV-LYEKSANGDYALIRYPSQREDPAFKIPNG-VARI----ETHAFDSCAY 266 (394)
T ss_dssp CT----TTTTTCTTCCEEEECCSSSCBSSSC-EEEECTTSCEEEEECCTTCCCSEEECCTT-EEEE----CTTTTTTCSS
T ss_pred cc----chhhhccccceecccccccccccce-eecccccccccccccccccccceEEcCCc-ceEc----ccceeeeccc
Confidence 22 3355677777766554432110000 0000 0 000012223333221 1110 0124667888
Q ss_pred CcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHh
Q 007577 389 LLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK 468 (597)
Q Consensus 389 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 468 (597)
|+.+.+..+... .+ ..++..++.|+.+.+.. .++..+. ..+..|.+|+.++|..+ ++..+. .++.
T Consensus 267 L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~-~i~~I~~----~aF~~c~~L~~i~lp~~-v~~I~~----~aF~ 331 (394)
T 4gt6_A 267 LASVKMPDSVVS-IG----TGAFMNCPALQDIEFSS-RITELPE----SVFAGCISLKSIDIPEG-ITQILD----DAFA 331 (394)
T ss_dssp CCEEECCTTCCE-EC----TTTTTTCTTCCEEECCT-TCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTT
T ss_pred ccEEecccccce-ec----CcccccccccccccCCC-cccccCc----eeecCCCCcCEEEeCCc-ccEehH----hHhh
Confidence 888888765321 10 12455678888888864 3433221 23567788999988765 322111 3456
Q ss_pred hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCC
Q 007577 469 FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEI 540 (597)
Q Consensus 469 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i 540 (597)
.|.+|+.+.+..+ ++..+. .++.+|++|+.+++.++... . ..+. ....|+.+.+..+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~----~aF~~C~~L~~i~~~~~~~~---~----~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPE----SAFSNCTALNNIEYSGSRSQ---W----NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCG----GGGTTCTTCCEEEESSCHHH---H----HTCB-CCCCC----------
T ss_pred CCCCCCEEEECcc-cCEEhH----hHhhCCCCCCEEEECCceee---h----hhhh-ccCCCCEEEeCCCCE
Confidence 6788999988654 433332 24667889999998876321 1 1111 236688888876654
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.14 E-value=3.1e-05 Score=79.34 Aligned_cols=297 Identities=8% Similarity=0.118 Sum_probs=147.6
Q ss_pred HHHhcCCCcEEEcCCCC---CCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChh
Q 007577 157 FAKELRAFSSVDMSGRN---FGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDE 233 (597)
Q Consensus 157 ~~~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 233 (597)
.+.++.+|+.+.+..+. +...+ ..+|..|.+|+.+.+..+ ++..+ ...+..|.+|+.+.+..+ +...
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig----~~aF~~c~~L~~i~~~~~-~~~I~----~~aF~~c~~L~~i~lp~~-~~~I 151 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIG----RQAFMFCSELTDIPILDS-VTEID----SEAFHHCEELDTVTIPEG-VTSV 151 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEEC----TTTTTTCTTCCBCGGGTT-CSEEC----TTTTTTCTTCCEEECCTT-CCEE
T ss_pred HhhCCccCceEeecCCCCCeeeEec----hhhchhcccceeeccCCc-cceeh----hhhhhhhcccccccccce-eeee
Confidence 45578889999887542 32221 134667788888877654 22221 123457788999998653 2221
Q ss_pred HHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCC
Q 007577 234 GVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNY 313 (597)
Q Consensus 234 ~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 313 (597)
+. ..+..|..|+.+.+..+ ++..+..++ .+..|+.+.+..+-. ..+ ..++..+..++........
T Consensus 152 ~~----~~F~~c~~L~~i~~~~~-~~~I~~~aF-----~~~~l~~i~ip~~~~-~i~----~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 152 AD----GMFSYCYSLHTVTLPDS-VTAIEERAF-----TGTALTQIHIPAKVT-RIG----TNAFSECFALSTITSDSES 216 (394)
T ss_dssp CT----TTTTTCTTCCEEECCTT-CCEECTTTT-----TTCCCSEEEECTTCC-EEC----TTTTTTCTTCCEEEECCSS
T ss_pred cc----cceecccccccccccce-eeEeccccc-----cccceeEEEECCccc-ccc----cchhhhccccceecccccc
Confidence 11 23345788888888754 333222222 235688888765421 111 1234456677766654432
Q ss_pred CChHHHHHHH---------HHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHH
Q 007577 314 GGALGANALA---------KGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIK 384 (597)
Q Consensus 314 i~~~~~~~l~---------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 384 (597)
........+. ........+..+.+... +.. +....+..+..|+.+.+..+...- -..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~-----i~~~aF~~c~~L~~i~lp~~~~~I-----~~~aF~ 285 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VAR-----IETHAFDSCAYLASVKMPDSVVSI-----GTGAFM 285 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEE-----ECTTTTTTCSSCCEEECCTTCCEE-----CTTTTT
T ss_pred cccccceeecccccccccccccccccccceEEcCCc-ceE-----cccceeeecccccEEeccccccee-----cCcccc
Confidence 2111000000 00001122333333211 111 112222445567777776542211 113356
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
.|++|+.+.+..+ ++..+ ..++..+.+|+.++|..+ ++..+. .++..|.+|+.+.|..+ ++..+.
T Consensus 286 ~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~~C~~L~~i~ip~s-v~~I~~---- 350 (394)
T 4gt6_A 286 NCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILD----DAFAGCEQLERIAIPSS-VTKIPE---- 350 (394)
T ss_dssp TCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCEEEECTT-CCBCCG----
T ss_pred cccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehH----hHhhCCCCCCEEEECcc-cCEEhH----
Confidence 6778888887643 32211 124556778888888654 333221 23566788888888654 222111
Q ss_pred HHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 465 EVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
.++..|.+|+.+++.++.. ....+..|.+|+.+.+..+.+
T Consensus 351 ~aF~~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGTTCTTCCEEEESSCHH-------HHHTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCCE
Confidence 3456778888888877642 123456678888888776643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=81.22 E-value=0.048 Score=54.92 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=8.9
Q ss_pred HhccCCCccEEEecc
Q 007577 185 SLGYNQTAEEVSFAA 199 (597)
Q Consensus 185 ~l~~~~~L~~L~L~~ 199 (597)
+|..|.+|++++|..
T Consensus 64 aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 64 NFNSCYNMTKVTVAS 78 (379)
T ss_dssp TTTTCTTCCEEEECT
T ss_pred HhhCCCCCCEEEeCC
Confidence 355566666666654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=80.52 E-value=0.25 Score=49.51 Aligned_cols=130 Identities=12% Similarity=0.175 Sum_probs=81.5
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+..|+.+.+..+ +...+. .++.++..|+.+.+..+ ++. +....+..+..|+.+.+..+ +...
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~----~~f~~~~~L~~i~lp~~-v~~-----I~~~aF~~~~~l~~i~l~~~-i~~i---- 277 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGD----GAFYGMKALDEIAIPKN-VTS-----IGSFLLQNCTALKTLNFYAK-VKTV---- 277 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECT----TTTTTCSSCCEEEECTT-CCE-----ECTTTTTTCTTCCEEEECCC-CSEE----
T ss_pred ccccccceeeeccc-eeEEcc----ccccCCccceEEEcCCC-ccE-----eCccccceeehhcccccccc-ceec----
Confidence 35677888887654 232222 33567888998888654 332 22223345567888888654 3331
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCC
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYN 453 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 453 (597)
-...+..|.+|+.+.+.++.++..+. .++..+.+|+.+.|..+ ++..+. .++.+|.+|+.+.+..+
T Consensus 278 ~~~aF~~c~~L~~i~l~~~~i~~I~~----~aF~~c~~L~~i~lp~~-l~~I~~----~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PYLLCSGCSNLTKVVMDNSAIETLEP----RVFMDCVKLSSVTLPTA-LKTIQV----YAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTTTTTCTTCCEEEECCTTCCEECT----TTTTTCTTCCEEECCTT-CCEECT----TTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccccccceehh----hhhcCCCCCCEEEcCcc-ccEEHH----HHhhCCCCCCEEEECCc
Confidence 11346788999999998776654211 35667889999999754 444322 23667899999988655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 597 | ||||
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-23 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 9e-21 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-18 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-18 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-18 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-17 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-17 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-17 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-16 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-16 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-16 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-16 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-15 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-15 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-15 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-13 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-12 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-11 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-20 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 5e-20 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 1e-19 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 6e-19 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 7e-10 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 4e-14 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 2e-13 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 2e-13 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 4e-12 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 2e-09 | |
| d1pgva_ | 167 | c.10.1.1 (A:) Tropomodulin C-terminal domain {nema | 3e-06 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 3e-12 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 4e-12 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 2e-09 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 7e-09 | |
| d1io0a_ | 166 | c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic | 2e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 0.004 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.002 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 101 bits (252), Expect = 1e-23
Identities = 108/420 (25%), Positives = 173/420 (41%), Gaps = 9/420 (2%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNL 225
S+D+ D L L Q V G+T A K L+ N AL LNL
Sbjct: 6 SLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 226 SGNPIGDEGVKCLCDIL-VDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNN 284
N +GD GV C+ L + +++L L + L G ++ L+ L+ L L++N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 285 MIDYSGFTSLAEALLENSTI-RSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
++ +G L E LL+ L L A LA L +EL + N I
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
+ G+R L GL +L L + + +++ + + + SL + L N +GD G
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242
Query: 404 AE-KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462
L + + T+ + I +KG + RVL+ + L LA N +G +GA+
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302
Query: 463 LSEVLKFHGNINTL-KLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
L E L G + C A+ + +L N + L + N L D G + L Q
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362
Query: 522 SFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
L + LA ++ D ++A L AN ++ L+L+NN L G L ++
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH--SLRELDLSNNCLGDAGILQLVES 420
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.1 bits (229), Expect = 9e-21
Identities = 69/438 (15%), Positives = 146/438 (33%), Gaps = 7/438 (1%)
Query: 150 SKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKA 209
S E L+ V + + ++ +L N E++ +N + G+
Sbjct: 15 SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 74
Query: 210 FDGVLQS-NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268
LQ+ + ++ L+L + G L L ++ L LS L D G + + E
Sbjct: 75 VLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 134
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
L + + ++L N +
Sbjct: 135 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 194
Query: 329 NKSLRELHLHGNSIGDEGIRAL-MSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCK 387
+ + L S G + G+ + K L L +G+N + G + + +
Sbjct: 195 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 254
Query: 388 SLLWINLYMNDIGDEGAEKIADA-LKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVI 445
S L L+ ++ + L GN + +GA + L + +
Sbjct: 255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 314
Query: 446 TSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGA-EFVADMLRYNNTISIL 504
SL + A S VL + + L++ ++ +G E + + + + +L
Sbjct: 315 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 374
Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLN 564
L + D LA + N +L +DL+ N + D G + ++++ + L
Sbjct: 375 WLADCDVSDSSCSSLAATLL-ANHSLRELDLSNNCLGDAGILQLVESVRQP-GCLLEQLV 432
Query: 565 LANNFLTKFGQSALTDAK 582
L + + ++ + L +
Sbjct: 433 LYDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.6 bits (212), Expect = 1e-18
Identities = 25/139 (17%), Positives = 56/139 (40%), Gaps = 2/139 (1%)
Query: 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNN 426
+ S +A H + + + LL + + N + D G ++ L Q + + + L +
Sbjct: 321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 380
Query: 427 IHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLK-FHGNINTLKLGWCQIGA 485
+ S++A L N + LDL+ N +G G L E ++ + L L
Sbjct: 381 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 440
Query: 486 SGAEFVADMLRYNNTISIL 504
+ + + + ++ ++
Sbjct: 441 EMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.2 bits (211), Expect = 1e-18
Identities = 29/142 (20%), Positives = 57/142 (40%), Gaps = 1/142 (0%)
Query: 308 HLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIG 367
+ A + + L N+ L EL + N + D G+R L GL L VL +
Sbjct: 318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 377
Query: 368 NNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNN 426
+ +S +A + SL ++L N +GD G ++ ++++Q + + L
Sbjct: 378 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 437
Query: 427 IHSKGASAIARVLKDNSVITSL 448
+ + + KD + +
Sbjct: 438 WSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.0 bits (208), Expect = 4e-18
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 331 SLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLL 390
++ L + + D L+ L V+ + + ++ ++ ++ +L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQ----CQVVRLDDCGLTEARCKDISSALRVNPALA 58
Query: 391 WINLYMNDIGDEGAEKIADALKQNRT-ITTIDLGGNNIH 428
+NL N++GD G + L+ I + L +
Sbjct: 59 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.7 bits (202), Expect = 2e-17
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 217 NIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSIL 276
++ +++L++ + D L +L + ++L L + K I+ L+ N L
Sbjct: 1 SLDIQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPAL 57
Query: 277 RVLELNNNMIDYSGFTSLAEALLENST-IRSLHLNGNY 313
L L +N + G + + L S I+ L L
Sbjct: 58 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.9 bits (200), Expect = 4e-17
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 282 NNNMIDYSGFTSLAEALLEN-STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGN 340
+NN ++ +G L + L + S +R L L ++LA L N SLREL L N
Sbjct: 348 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 407
Query: 341 SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSL 389
+GD GI L+ + L L + + S + + K+ SL
Sbjct: 408 CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.6 bits (199), Expect = 5e-17
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 4/91 (4%)
Query: 361 LAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTI 420
+ LDI +S + ++ C+ + L + + + I+ AL+ N + +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 421 DLGGNNIHSKGASAIARVLKDNSV-ITSLDL 450
+L N + G + + L+ S I L L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.8 bits (197), Expect = 1e-16
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 1/99 (1%)
Query: 210 FDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269
G+ Q L+ L L+ + D L L+ N + L LS+ L D G + E
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 270 LKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
++ +L L L + L + ++R +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.0 bits (195), Expect = 1e-16
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNA-GVERL 251
+ A ++ + + L +N +L+ L+LS N +GD G+ L + + +E+L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVL 279
L + +E + L K+ LRV+
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.9 bits (192), Expect = 4e-16
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISIL 504
I SLD+ + L +L+ ++L C + + + ++ LR N ++ L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 505 DLRANGLRDEGAKCLAQSFKVVNEALTSIDL 535
+LR+N L D G C+ Q + + + + L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.1 bits (190), Expect = 7e-16
Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
++ L++ + + + L L + + L+ ++ L N +L EL
Sbjct: 4 IQSLDIQCEELSDARWAELLPLL---QQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 336 HLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLY 395
+L N +GD G+ ++ GL + K+ L + N ++ G ++ ++ +L ++L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120
Query: 396 MNDIGDEGAEKIADALKQN 414
N +GD G + + + L
Sbjct: 121 DNLLGDAGLQLLCEGLLDP 139
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.6 bits (186), Expect = 2e-15
Identities = 21/96 (21%), Positives = 35/96 (36%)
Query: 467 LKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVV 526
+ + L L C + S +A L N+++ LDL N L D G L +S +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 527 NEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTS 562
L + L ++ + K + V S
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.2 bits (185), Expect = 3e-15
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 260 DEGAKAIAEL-LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG 318
D G + + + + S+LRVL L + + S +SLA LL N ++R L L+ N G G
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Query: 319 ANALAKGLEGNKS-LRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
L + + L +L L+ +E L + L K L V+
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA-LEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.0 bits (182), Expect = 6e-15
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 248 VERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSL 307
++ L + +L D + LL+ +V+ L++ + + ++ AL N + L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALAEL 60
Query: 308 HLNGNYGGALGANALAKGLEGNK-SLRELHLHGN 340
+L N G +G + + +GL+ +++L L
Sbjct: 61 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.8 bits (166), Expect = 6e-13
Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 193 EEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQ 252
+ + ++ A +LQ + + L + + K + L N + L
Sbjct: 5 QSLDIQCEELSDARWAELLPLLQQ---CQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 253 LSSVDLRDEGAKAIAELLKNNSI-LRVLELNNNMIDY 288
L S +L D G + + L+ S ++ L L N +
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.5 bits (160), Expect = 3e-12
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 472 NINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALT 531
+I +L + ++ + A++L ++ L GL + K ++ + +V N AL
Sbjct: 3 DIQSLDIQCEELSDAR---WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV-NPALA 58
Query: 532 SIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNF 569
++L NE+ D G + Q L+ + L+L N
Sbjct: 59 ELNLRSNELGDVGVHCVLQGLQTP-SCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.3 bits (149), Expect = 6e-11
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 166 SVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNI-ALKTLN 224
+ ++ + D LA +L N + E+ + N + AGI ++ L+ L
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432
Query: 225 LSGNPIGDEGVKCLCDILVDN 245
L +E L + D
Sbjct: 433 LYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 149 ESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTA-EEVSFAANGITAAGI 207
S +L + +D+S GD G+ L ES+ E++ +
Sbjct: 384 SSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 443
Query: 208 KAFDGVLQSNIALKTL 223
+ + +L+ +
Sbjct: 444 DRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (88), Expect = 0.002
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 530 LTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDA 581
+ S+D+ E+ D + L+ + L + LT+ ++ A
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQ-----QCQVVRLDDCGLTEARCKDISSA 50
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 91.5 bits (225), Expect = 1e-20
Identities = 56/317 (17%), Positives = 112/317 (35%), Gaps = 17/317 (5%)
Query: 276 LRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLREL 335
+ L + I S+ LLE+ +++ + L+GN G A L++ + K L
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 336 HLHGNSIG--DEGIRALMSGLSSRKGKLAVLDI---GNNSISAKGAFHVAEYIKNCKSLL 390
G + I + L K L +N+ + +++ L
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 391 WINLYMNDIGDEGAE---------KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKD 441
+ L+ N +G + + K + +I G N + + A+ +
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
Query: 442 NSVITSLDLAYNPIGADGAKALSE-VLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNT 500
+ ++ ++ + N I +G + L L + + L L G+ +A L+
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244
Query: 501 ISILDLRANGLRDEGAKCLAQSF-KVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVA 559
+ L L L GA + +F K+ N L ++ L +NEI D + +
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-D 303
Query: 560 VTSLNLANNFLTKFGQS 576
+ L L N ++
Sbjct: 304 LLFLELNGNRFSEEDDV 320
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 89.6 bits (220), Expect = 5e-20
Identities = 65/317 (20%), Positives = 124/317 (39%), Gaps = 18/317 (5%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
++ +L + I E K + +L+++ V+ + LS + E A+ ++E + + L +
Sbjct: 5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64
Query: 280 ELNNNMID------YSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLR 333
E ++ L +ALL+ + ++ L+ N G L L + L
Sbjct: 65 EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124
Query: 334 ELHLHGNSIGDEGIRALMSGLS--------SRKGKLAVLDIGNNSISAKGAFHVAEYIKN 385
L+LH N +G + + L L + G N + A+ ++
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184
Query: 386 CKSLLWINLYMNDIGDEGAE-KIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSV 444
+ L + + N I EG E + + L + + +DL N G+SA+A LK
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244
Query: 445 ITSLDLAYNPIGADGAKALSEVLKFHGNIN--TLKLGWCQIGASGAEFVADMLRYNNT-I 501
+ L L + A GA A+ + NI TL+L + +I + ++ +
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304
Query: 502 SILDLRANGLRDEGAKC 518
L+L N +E
Sbjct: 305 LFLELNGNRFSEEDDVV 321
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 88.4 bits (217), Expect = 1e-19
Identities = 61/327 (18%), Positives = 115/327 (35%), Gaps = 50/327 (15%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS---V 256
+ IT K+ VL + ++K + LSGN IG E + L + + +E + S
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 257 DLRDEGAKAIAELLKNNSILRVLELNNN-------------------------------- 284
++DE +A+ LL+ L
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132
Query: 285 --------MIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336
+ ++ + +RS+ N AK + ++ L +
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192
Query: 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYM 396
+ N I EGI L+ + +L VLD+ +N+ + G+ +A +K+ +L + L
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252
Query: 397 NDIGDEGAEKIADALK--QNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYN 453
+ GA + DA +N + T+ L N I + V+ + + L+L N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312
Query: 454 PIGADGA--KALSEVLK--FHGNINTL 476
+ + EV G ++ L
Sbjct: 313 RFSEEDDVVDEIREVFSTRGRGELDEL 339
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 86.1 bits (211), Expect = 6e-19
Identities = 61/312 (19%), Positives = 107/312 (34%), Gaps = 17/312 (5%)
Query: 251 LQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLN 310
L + E K++ +L + ++ + L+ N I L+E + + +
Sbjct: 8 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 311 GNYGGALGANA------LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVL 364
+ G + L + L L + L N+ G L+ LS +
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 365 DIGNNSISAKGA--------FHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRT 416
N GA V + KN L I N + + ++ A + +R
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 417 ITTIDLGGNNIHSKGASAIAR-VLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475
+ T+ + N I +G + L + LDL N G+ AL+ LK N+
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 476 LKLGWCQIGASGAEFVADMLRY--NNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSI 533
L L C + A GA V D N + L L+ N + + + L L +
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307
Query: 534 DLAFNEIRDDGA 545
+L N ++
Sbjct: 308 ELNGNRFSEEDD 319
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 58.4 bits (139), Expect = 7e-10
Identities = 13/68 (19%), Positives = 30/68 (44%)
Query: 416 TITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINT 475
+I L + I ++ ++ VL ++ + + L+ N IG + A+ LSE + ++
Sbjct: 4 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 476 LKLGWCQI 483
+
Sbjct: 64 AEFSDIFT 71
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 68.4 bits (166), Expect = 4e-14
Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 6/143 (4%)
Query: 384 KNCKSLLWINL-YMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
++ L +N+ M + E + +A ++ I L I A + +++ +
Sbjct: 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS 71
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC---QIGASGAEFVADMLRYNN 499
+ L++ N + + L +I K +G + + N
Sbjct: 72 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE 131
Query: 500 TISILDLRAN--GLRDEGAKCLA 520
++ + + R ++ L
Sbjct: 132 SLLRVGISFASMEARHRVSEALE 154
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.5 bits (161), Expect = 2e-13
Identities = 18/156 (11%), Positives = 53/156 (33%), Gaps = 5/156 (3%)
Query: 405 EKIADALKQNRTITTIDLGG-NNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
I + + + +++ + + ++ ++ I LA I A+ L
Sbjct: 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64
Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSF 523
E+++ ++ L + + + +I G +
Sbjct: 65 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124
Query: 524 KVV--NEALTSIDLAFNEIRDDGAFAIAQALKANED 557
+ NE+L + ++F + + +++AL+ N +
Sbjct: 125 MAIEENESLLRVGISFASM--EARHRVSEALERNYE 158
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.5 bits (161), Expect = 2e-13
Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 7/158 (4%)
Query: 264 KAIAELLKNNSILRVLELNN-NMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANAL 322
I L ++++ L+ + +NN + SL EA + I L A L
Sbjct: 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGL 64
Query: 323 AKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDI---GNNSISAKGAFHV 379
+ +E + SLR L++ N + E + L+ + + + + + +
Sbjct: 65 IELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQ-SIVEFKADNQRQSVLGNQVEMDM 123
Query: 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTI 417
I+ +SLL + + + ++++AL++N
Sbjct: 124 MMAIEENESLLRVGISFASME--ARHRVSEALERNYER 159
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.7 bits (151), Expect = 4e-12
Identities = 17/154 (11%), Positives = 62/154 (40%), Gaps = 7/154 (4%)
Query: 293 SLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
+ +++ ++ +++N +L + +K + + L +I D R L+
Sbjct: 6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI 65
Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN---DIGDEGAEKIA 408
+ + VL++ +N ++ + + +S++ +G++ +
Sbjct: 66 ELIETSPSL-RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 124
Query: 409 DALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
A+++N ++ + + ++ + ++ L+ N
Sbjct: 125 MAIEENESLLRVGISFASM--EARHRVSEALERN 156
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (130), Expect = 2e-09
Identities = 18/139 (12%), Positives = 51/139 (36%), Gaps = 5/139 (3%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
++ I++ ++ ++ +L+ I D + L +++ + + L + S L
Sbjct: 26 KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85
Query: 260 DEGAKAIAELLKNNSILRVLELNNN---MIDYSGFTSLAEALLENSTIRSLHLNGNYGGA 316
E + + + +N ++ + A+ EN ++ + ++ A
Sbjct: 86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 145
Query: 317 --LGANALAKGLEGNKSLR 333
+ AL + E + R
Sbjct: 146 RHRVSEALERNYERVRLRR 164
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 33/164 (20%)
Query: 151 KQTLNEFAKELRAFSSVDMSG-RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAG--- 206
+ +N ++ V+++ + E + L E+ ++ E+ S A I+ +
Sbjct: 4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 63
Query: 207 -------------------------IKAFDGVLQSNIALKTLNLS---GNPIGDEGVKCL 238
+ ++ + +G++ +
Sbjct: 64 LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123
Query: 239 CDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELN 282
+ +N + R+ +S + + A L +N +R+ L
Sbjct: 124 MMAIEENESLLRVGISFASMEARHRVSEA-LERNYERVRLRRLG 166
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 62.8 bits (151), Expect = 3e-12
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 384 KNCKSLLWINLY-MNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
N L +NL + +I + A+ALK N + + G + A A+A +LK N
Sbjct: 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN 73
Query: 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK--LGWCQIGASGAEFVADMLRYNNT 500
+ + SL++ N I G AL E L+ + ++ L+ +G + +A+ML N T
Sbjct: 74 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT 133
Query: 501 ISILDL--RANGLRDEGAKCLA 520
+ G R + +
Sbjct: 134 LLKFGYHFTQQGPRLRASNAMM 155
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 62.4 bits (150), Expect = 4e-12
Identities = 24/152 (15%), Positives = 49/152 (32%), Gaps = 4/152 (2%)
Query: 293 SLAEALLENSTIRSLHLNG-NYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALM 351
+L + + ++LN A A+ L+ N +++ + G D AL
Sbjct: 8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA 67
Query: 352 SGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS-LLWINLYMNDIGDEGAEKIADA 410
L ++ N + V N L I+ +G+ +IA+
Sbjct: 68 EMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 127
Query: 411 LKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442
L++N T+ + + +N
Sbjct: 128 LEKNTTLLKFGYHFTQQ--GPRLRASNAMMNN 157
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 54.7 bits (130), Expect = 2e-09
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 200 NGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLR 259
I +KA L++N +K ++ G D L ++L N ++ L + S +
Sbjct: 28 MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87
Query: 260 DEGAKAIAELLKNNSILRVLELNNN--MIDYSGFTSLAEALLENSTIRSLHLNGNYGGAL 317
G A+ E L++N+ L L ++N + + +A L +N+T+ + G
Sbjct: 88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP- 146
Query: 318 GANALAKGLEGNKSLREL 335
+ + N L
Sbjct: 147 -RLRASNAMMNNNDLVRK 163
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 53.1 bits (126), Expect = 7e-09
Identities = 36/183 (19%), Positives = 72/183 (39%), Gaps = 30/183 (16%)
Query: 236 KCLCDILVDNAGVERLQLSSV-DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSL 294
+ L I ++ +E + L+++ ++ KA AE LK N+ ++ + + +L
Sbjct: 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 66
Query: 295 AEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGL 354
AE L N+T++SL++ N+ G AL + L+ N SL EL + S
Sbjct: 67 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS------------- 113
Query: 355 SSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQN 414
+ +A ++ +LL + G + ++A+ N
Sbjct: 114 --------------QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL--RASNAMMNN 157
Query: 415 RTI 417
+
Sbjct: 158 NDL 160
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 2/157 (1%)
Query: 433 SAIARVLKDNSVITSLDLA-YNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFV 491
+ R+ ++ + ++L I KA +E LK + + + + A +
Sbjct: 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFAL 66
Query: 492 ADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV-VNEALTSIDLAFNEIRDDGAFAIAQ 550
A+ML+ NNT+ L++ +N + G L ++ + + ID + ++ IA
Sbjct: 67 AEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 126
Query: 551 ALKANEDVAVTSLNLANNFLTKFGQSALTDAKDLVYE 587
L+ N + + +A+ + DLV +
Sbjct: 127 MLEKNTTLLKFGYHFTQQGPRLRASNAMMNNNDLVRK 163
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 37/302 (12%)
Query: 286 IDYSGFTSLAEAL--LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIG 343
+D +G + L + + + ++ A + ++ + L + I
Sbjct: 5 LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-----PFRVQHMDLSNSVIE 59
Query: 344 DEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEG 403
+ ++S S KL L + +S + +L+ +NL E
Sbjct: 60 VSTLHGILSQCS----KLQNLSLEGLRLSDPI----VNTLAKNSNLVRLNLSGCSGFSEF 111
Query: 404 AEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKAL 463
A + + + + A+A V + + + N +D
Sbjct: 112 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL---- 167
Query: 464 SEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDL-RANGLRDEGAKCLAQS 522
S +++ N+ L L + + N + L L R + E L +
Sbjct: 168 STLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFQLNYLQHLSLSRCYDIIPETLLELGE- 223
Query: 523 FKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAK 582
L ++ + F + D + +AL L + + T + + + K
Sbjct: 224 ----IPTLKTLQV-FGIVPDGTLQLLKEALP--------HLQINCSHFTTIARPTIGNKK 270
Query: 583 DL 584
+
Sbjct: 271 NQ 272
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.004
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 418 TTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLK 477
T+DL G N+H R+L + + + + A+ S + +
Sbjct: 3 QTLDLTGKNLHP---DVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSPF-----RVQHMD 52
Query: 478 LGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQ 521
L I S + +L + + L L L D LA+
Sbjct: 53 LSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 53/323 (16%), Positives = 98/323 (30%), Gaps = 47/323 (14%)
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLEN-STIRSLHLN 310
L V D G + + + L + +L+L NN I T + + +N + +L L
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKI-----TEIKDGDFKNLKNLHTLILI 63
Query: 311 GNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNS 370
N + A A L L+L N + + L + +L V +
Sbjct: 64 NNKISKISPGAFA----PLVKLERLYLSKNQL-----KELPEKMPKTLQELRVHENEITK 114
Query: 371 ISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSK 430
+ V + + + G A + + ++ I + NI +
Sbjct: 115 VR----KSVFNGLNQMIVVELGTNPLKSSGI-----ENGAFQGMKKLSYIRIADTNITTI 165
Query: 431 GASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEF 490
+T L L N I A + G N KLG S +
Sbjct: 166 PQGLPPS-------LTELHLDGNKITKVDAAS------LKGLNNLAKLGLSFNSISAVDN 212
Query: 491 VADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQ 550
L + L L N L ++ + + L N I G+
Sbjct: 213 --GSLANTPHLRELHLNNNKLVKVPGGLAD------HKYIQVVYLHNNNISAIGSNDFCP 264
Query: 551 ALKANEDVAVTSLNLANNFLTKF 573
+ + + ++L +N + +
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYW 287
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 0.001
Identities = 41/268 (15%), Positives = 79/268 (29%), Gaps = 48/268 (17%)
Query: 220 LKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVL 279
L+L N I + + + L L + + A A L+K L L
Sbjct: 33 TALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK----LERL 84
Query: 280 ELNNNMID------YSGFTSLAEALLENSTIR---------SLHLNGNYGGALGANALAK 324
L+ N + L E + +R + + +
Sbjct: 85 YLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144
Query: 325 GLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA----------- 373
+G K L + + + I + GL L L + N I+
Sbjct: 145 AFQGMKKLSYIRIADTN-----ITTIPQGLPP---SLTELHLDGNKITKVDAASLKGLNN 196
Query: 374 ----KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429
+F+ + N +L + + K+ L ++ I + L NNI +
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256
Query: 430 KGASAIA--RVLKDNSVITSLDLAYNPI 455
G++ + + + L NP+
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 0.001
Identities = 42/184 (22%), Positives = 61/184 (33%), Gaps = 30/184 (16%)
Query: 252 QLSSVDLRDEGAKAIAELLKNNSILRVLELNNN----MIDYSGFTSLAEALLENSTIR-- 305
L + L K I L + + L L+L NN + SG T L E L + I
Sbjct: 220 NLDELSLNGNQLKDIGTL-ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 278
Query: 306 ----SLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKL 361
L N + K+L L L+ N+I I + S L+ L
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI--SDISPV-SSLTK----L 331
Query: 362 AVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTID 421
L NN +S + N ++ W++ N I D L IT +
Sbjct: 332 QRLFFANNKVSD------VSSLANLTNINWLSAGHNQISDL------TPLANLTRITQLG 379
Query: 422 LGGN 425
L
Sbjct: 380 LNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 37/189 (19%)
Query: 220 LKTLNLSGNPIGDEGV----KCLCDILVDNAGVERL-------QLSSVDLRDEGAKAIAE 268
L L+L+GN + D G L D+ + N + L +L+ + L I+
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280
Query: 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEG 328
L ++ + N + D S ++L + L L N + +
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNL-------KNLTYLTLYFNNISDISP------VSS 327
Query: 329 NKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKS 388
L+ L N + + +L + L++ + L G+N IS N
Sbjct: 328 LTKLQRLFFANNKV--SDVSSL-ANLTN----INWLSAGHNQISDLTPLA------NLTR 374
Query: 389 LLWINLYMN 397
+ + L
Sbjct: 375 ITQLGLNDQ 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 597 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 100.0 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.97 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.85 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.84 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.82 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.79 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.64 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.62 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.57 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.57 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.57 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.55 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 99.55 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.53 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.52 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 99.51 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.51 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.51 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.47 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.43 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.4 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.33 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.19 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.13 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.09 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.08 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.03 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.99 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.96 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.95 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.88 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.7 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.32 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.29 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.21 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.12 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-37 Score=324.69 Aligned_cols=429 Identities=19% Similarity=0.266 Sum_probs=261.1
Q ss_pred HHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhh-CCCccEEEccCCCC
Q 007577 152 QTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQS-NIALKTLNLSGNPI 230 (597)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l 230 (597)
..+.+++..+++++.|+|++|.+++.++..|+..+..+++|++|+|++|.|++.++..+...+.. ..+|++|+|++|.+
T Consensus 17 ~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 96 (460)
T d1z7xw1 17 ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96 (460)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCc
Confidence 33344444455555555555555555555555555555555555555555555555555544432 22455555555555
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcC-CCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEc
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNN-SILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHL 309 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 309 (597)
++.+...++..+..+++|++|++++|.+++.++..+...+... ............+...+...+...+.....++.+.+
T Consensus 97 t~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 176 (460)
T d1z7xw1 97 TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176 (460)
T ss_dssp BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccc
Confidence 5555555555555555555555555555555555554444322 123334444444444445555555555666666666
Q ss_pred CCCCCChHHHHHHHHHhhcC-CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH-HHHHHcCC
Q 007577 310 NGNYGGALGANALAKGLEGN-KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV-AEYIKNCK 387 (597)
Q Consensus 310 ~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-~~~l~~~~ 387 (597)
+++.+.+.+...+...+... .....+++..+.+...+.......+.. .+.++.+++++|.+.+.+.... ........
T Consensus 177 s~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~ 255 (460)
T d1z7xw1 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS-KASLRELALGSNKLGDVGMAELCPGLLHPSS 255 (460)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH-CTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred cccccccccccccccccccccccccccccccccccchhhhcccccccc-cccccccchhhccccccccchhhcccccccc
Confidence 66666555544444444332 245566666666655555444444432 2356777777776665543322 22333456
Q ss_pred CCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHH
Q 007577 388 SLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEV 466 (597)
Q Consensus 388 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~ 466 (597)
.++.|++++|.+.......+...+..++.++.+++++|.+++.+...++..+... ..|+.+++++|.+++.++..+...
T Consensus 256 ~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~ 335 (460)
T d1z7xw1 256 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 335 (460)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc
Confidence 6777777777777776666666676777777777777777777777776665543 567777777777777777777777
Q ss_pred HhhCCCcCEEecCCCCCChhHHHHHHHHHh-cCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHH
Q 007577 467 LKFHGNINTLKLGWCQIGASGAEFVADMLR-YNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGA 545 (597)
Q Consensus 467 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~ 545 (597)
+..+++|++|+|++|+|++.+...++..+. .++.|++|++++|.|++.++..+++.+.. +++|++|||++|.|++.|.
T Consensus 336 ~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~ 414 (460)
T d1z7xw1 336 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-NHSLRELDLSNNCLGDAGI 414 (460)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH-CCCCCEEECCSSSCCHHHH
T ss_pred cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhc-CCCCCEEECCCCcCCHHHH
Confidence 777777777777777777777777766664 35667777777777777777777766653 3677777777777777777
Q ss_pred HHHHHHHHhCCCCceeEEEcccCccchhhHHHHHHHHH
Q 007577 546 FAIAQALKANEDVAVTSLNLANNFLTKFGQSALTDAKD 583 (597)
Q Consensus 546 ~~l~~~l~~~~~~~L~~L~L~~N~i~~~~~~~l~~~~~ 583 (597)
..+.+.++.+. +.|+.|++.+|.+.+...+.+.....
T Consensus 415 ~~l~~~l~~~~-~~L~~l~l~~~~~~~~~~~~l~~l~~ 451 (460)
T d1z7xw1 415 LQLVESVRQPG-CLLEQLVLYDIYWSEEMEDRLQALEK 451 (460)
T ss_dssp HHHHHHHTSTT-CCCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CccCEEECCCCCCCHHHHHHHHHHHH
Confidence 77777765444 35777777777777766666655443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-36 Score=320.06 Aligned_cols=419 Identities=23% Similarity=0.320 Sum_probs=373.2
Q ss_pred chhhhHHHHHHHHHHHHhcCCCcEEEcCCCCCCHHHHHHHHHHhcc-CCCccEEEeccCCCCHHHHHHHHHHhhhCCCcc
Q 007577 143 TGKLFRESKQTLNEFAKELRAFSSVDMSGRNFGDEGLFFLAESLGY-NQTAEEVSFAANGITAAGIKAFDGVLQSNIALK 221 (597)
Q Consensus 143 ~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~-~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~ 221 (597)
...+.+...+.+...++.+++|++|||++|.|++.++..+++.+.. ..+|++|++++|++++.+...++..+..+++|+
T Consensus 36 ~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~ 115 (460)
T d1z7xw1 36 DCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ 115 (460)
T ss_dssp SSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccc
Confidence 3456788888999999999999999999999999999999988875 458999999999999999999999999999999
Q ss_pred EEEccCCCCChhHHHHHHHHHhc-CCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhh
Q 007577 222 TLNLSGNPIGDEGVKCLCDILVD-NAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLE 300 (597)
Q Consensus 222 ~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 300 (597)
+|++++|.+++.+...+...+.. ......+......+...+...+...+..+..++.++++++.+.+.++..+...+..
T Consensus 116 ~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~ 195 (460)
T d1z7xw1 116 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 195 (460)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999998888887755 45567777877778877788888888889999999999999988888877777665
Q ss_pred -CCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHH
Q 007577 301 -NSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHV 379 (597)
Q Consensus 301 -~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 379 (597)
......+.+..+.+...+...+...+..++.++.+++++|.+.+.++.............++.+++++|.+........
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~ 275 (460)
T d1z7xw1 196 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 275 (460)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred ccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccc
Confidence 3477899999998888888778788888999999999999998887777777666667789999999999999888888
Q ss_pred HHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhc-CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH
Q 007577 380 AEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQ-NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD 458 (597)
Q Consensus 380 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 458 (597)
...+...+.++.+++++|.+++.++..+...+.. ...|+.+++++|.++..++..++..+..+++|++|+|++|+|+++
T Consensus 276 ~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~ 355 (460)
T d1z7xw1 276 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 355 (460)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred cccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCc
Confidence 8889999999999999999999999999888765 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-hCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccC
Q 007577 459 GAKALSEVLK-FHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAF 537 (597)
Q Consensus 459 ~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~ 537 (597)
++..+.+.+. .++.|++|++++|.|++.+...++..+..+++|++|+|++|.|++.|+..+.+.++.....|+.|++.+
T Consensus 356 g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~ 435 (460)
T d1z7xw1 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 435 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCC
Confidence 9999988875 467899999999999999999999999999999999999999999999999999876556899999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCceeEE
Q 007577 538 NEIRDDGAFAIAQALKANEDVAVTSL 563 (597)
Q Consensus 538 n~i~~~~~~~l~~~l~~~~~~~L~~L 563 (597)
|.+.++....+....+.++. |+.|
T Consensus 436 ~~~~~~~~~~l~~l~~~~~~--l~~~ 459 (460)
T d1z7xw1 436 IYWSEEMEDRLQALEKDKPS--LRVI 459 (460)
T ss_dssp CCCCHHHHHHHHHHHHHCTT--SEEE
T ss_pred CCCCHHHHHHHHHHHHhCCC--CEEe
Confidence 99999999999888887776 6654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.97 E-value=9.5e-29 Score=249.39 Aligned_cols=227 Identities=25% Similarity=0.290 Sum_probs=116.1
Q ss_pred HHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCCh
Q 007577 294 LAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISA 373 (597)
Q Consensus 294 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 373 (597)
+.+.+..+++|++|+|++|.++..+...+...+..+++|++|++++|.+++.+...+...+.. +
T Consensus 85 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-------~--------- 148 (344)
T d2ca6a1 85 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE-------L--------- 148 (344)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH-------H---------
T ss_pred HHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccc-------c---------
Confidence 333344444444444444444444444444444445555555555555544444333322210 0
Q ss_pred hHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHH-HHHHhhcCCCcCEEECcC
Q 007577 374 KGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASA-IARVLKDNSVITSLDLAY 452 (597)
Q Consensus 374 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~L~~L~Ls~ 452 (597)
.........+.|+.+++++|.+++.+...+..++..++.|++|+|++|.|++.++.. +...+..+++|+.|+|++
T Consensus 149 ----~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~ 224 (344)
T d2ca6a1 149 ----AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 224 (344)
T ss_dssp ----HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred ----ccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc
Confidence 011122344556666666666666666666666655666666666666666555433 334455555666666666
Q ss_pred CCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhc--CCCccEEEccCCCCChHHHHHHHHHHhhcCccc
Q 007577 453 NPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRY--NNTISILDLRANGLRDEGAKCLAQSFKVVNEAL 530 (597)
Q Consensus 453 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L 530 (597)
|.+++.+...+...+..+++|++|++++|.|++.+...++..+.. ++.|++|++++|.|++.++..+...+....++|
T Consensus 225 N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L 304 (344)
T d2ca6a1 225 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304 (344)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence 666555555555555555555555555555555555555555543 234555555555555555555555543222445
Q ss_pred cEEEccCCCC
Q 007577 531 TSIDLAFNEI 540 (597)
Q Consensus 531 ~~L~Ls~n~i 540 (597)
+.|+|++|++
T Consensus 305 ~~L~l~~N~~ 314 (344)
T d2ca6a1 305 LFLELNGNRF 314 (344)
T ss_dssp CEEECTTSBS
T ss_pred CEEECCCCcC
Confidence 5555555555
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.96 E-value=5.9e-28 Score=243.51 Aligned_cols=301 Identities=19% Similarity=0.276 Sum_probs=219.2
Q ss_pred CCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEE
Q 007577 257 DLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELH 336 (597)
Q Consensus 257 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 336 (597)
.++.+....+...+.++.+|++|+|++|.|++.++..+...+..+++|+.|+++++.......
T Consensus 14 ~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~----------------- 76 (344)
T d2ca6a1 14 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD----------------- 76 (344)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG-----------------
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCccccccc-----------------
Confidence 445555555555555555555555555555555555555555555555555555443211000
Q ss_pred ccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHH-----
Q 007577 337 LHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADAL----- 411 (597)
Q Consensus 337 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----- 411 (597)
....+...+...+. .+++|+.|++++|.+++.++..+...+..+++|++|++++|.+++.+...++.++
T Consensus 77 -----~~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~ 150 (344)
T d2ca6a1 77 -----EIPEALRLLLQALL-KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150 (344)
T ss_dssp -----GSHHHHHHHHHHHT-TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHh-hCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccccccccc
Confidence 00122333333332 2335666666666666666666666666666777777777766666655555443
Q ss_pred ----hcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH-HHHHHhhCCCcCEEecCCCCCChh
Q 007577 412 ----KQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA-LSEVLKFHGNINTLKLGWCQIGAS 486 (597)
Q Consensus 412 ----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~L~~L~L~~n~i~~~ 486 (597)
...+.|+.+++++|.+++.+...++..+..++.|++|+|++|.|+++++.. +.+.+..+++|++|++++|.+++.
T Consensus 151 ~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 230 (344)
T d2ca6a1 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 230 (344)
T ss_dssp HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred ccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccc
Confidence 346799999999999999999999999999999999999999999988655 566788899999999999999999
Q ss_pred HHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhh-cCccccEEEccCCCCChHHHHHHHHHHHh-CCCCceeEEE
Q 007577 487 GAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKV-VNEALTSIDLAFNEIRDDGAFAIAQALKA-NEDVAVTSLN 564 (597)
Q Consensus 487 ~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~-~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~~~L~~L~ 564 (597)
+...++..+..+++|++|++++|.|++.++..+++.+.. .+..|++|++++|+|++.+...+.+.+.. .+ .|+.|+
T Consensus 231 g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~--~L~~L~ 308 (344)
T d2ca6a1 231 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP--DLLFLE 308 (344)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT--TCCEEE
T ss_pred ccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC--CCCEEE
Confidence 999999999999999999999999999999999998864 45789999999999999999999998864 34 499999
Q ss_pred cccCccchhh--HHHHHHHH
Q 007577 565 LANNFLTKFG--QSALTDAK 582 (597)
Q Consensus 565 L~~N~i~~~~--~~~l~~~~ 582 (597)
|++|+|.+.+ ...+....
T Consensus 309 l~~N~~~~~~~~~~~l~~~~ 328 (344)
T d2ca6a1 309 LNGNRFSEEDDVVDEIREVF 328 (344)
T ss_dssp CTTSBSCTTSHHHHHHHHHH
T ss_pred CCCCcCCCcchHHHHHHHHH
Confidence 9999997644 34444443
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.85 E-value=1.6e-21 Score=198.83 Aligned_cols=305 Identities=22% Similarity=0.242 Sum_probs=224.5
Q ss_pred hcCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHH
Q 007577 160 ELRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 160 ~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
++.++++|+++++.|.+. +.+.++++|++|++++|+|++.. .+.++++|++|++++|++.+..
T Consensus 42 ~l~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~l~~l~------~l~~L~~L~~L~L~~n~i~~i~----- 104 (384)
T d2omza2 42 DLDQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADIT----- 104 (384)
T ss_dssp HHTTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCCG-----
T ss_pred HhCCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCcCCCCc------cccCCccccccccccccccccc-----
Confidence 457899999999988762 35678899999999999988642 2678899999999999997642
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhh-----------------------------
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSG----------------------------- 290 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~----------------------------- 290 (597)
.+..+++|+.|+++++.+++.... .....+..+....+.+....
T Consensus 105 -~l~~l~~L~~L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (384)
T d2omza2 105 -PLANLTNLTGLTLFNNQITDIDPL------KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177 (384)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCGGG------TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred -cccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence 255689999999999887764221 11123333333222110000
Q ss_pred --------HHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccc
Q 007577 291 --------FTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLA 362 (597)
Q Consensus 291 --------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 362 (597)
..........+++++.+++++|.++.... ...+++|++|++++|.+++.+ .+ ..+++|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~------~~~~~~L~~L~l~~n~l~~~~------~l-~~l~~L~ 244 (384)
T d2omza2 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP------LGILTNLDELSLNGNQLKDIG------TL-ASLTNLT 244 (384)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCCG------GG-GGCTTCS
T ss_pred ccccccccccccccccccccccceeeccCCccCCCCc------ccccCCCCEEECCCCCCCCcc------hh-hcccccc
Confidence 00001234467899999999998876532 456789999999999987732 12 3456899
Q ss_pred eeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC
Q 007577 363 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442 (597)
Q Consensus 363 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 442 (597)
.|++++|.++.. + .+..+++|++|++++|.++.. ..+..++.++.+++.+|.+++.. .+..+
T Consensus 245 ~L~l~~n~l~~~-----~-~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~l~~l~~~~n~l~~~~------~~~~~ 306 (384)
T d2omza2 245 DLDLANNQISNL-----A-PLSGLTKLTELKLGANQISNI------SPLAGLTALTNLELNENQLEDIS------PISNL 306 (384)
T ss_dssp EEECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCSCCG------GGGGC
T ss_pred hhccccCccCCC-----C-cccccccCCEeeccCcccCCC------Ccccccccccccccccccccccc------ccchh
Confidence 999999999873 2 367889999999999988763 13566889999999999987631 25667
Q ss_pred CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
+.++.|++++|.+++.. .+..+++|++|++++|++++.. .+..+++|++|++++|+|++..+ +...
T Consensus 307 ~~l~~L~ls~n~l~~l~------~l~~l~~L~~L~L~~n~l~~l~------~l~~l~~L~~L~l~~N~l~~l~~--l~~l 372 (384)
T d2omza2 307 KNLTYLTLYFNNISDIS------PVSSLTKLQRLFFANNKVSDVS------SLANLTNINWLSAGHNQISDLTP--LANL 372 (384)
T ss_dssp TTCSEEECCSSCCSCCG------GGGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred cccCeEECCCCCCCCCc------ccccCCCCCEEECCCCCCCCCh------hHcCCCCCCEEECCCCcCCCChh--hccC
Confidence 99999999999998642 2567899999999999998752 25678999999999999997532 3322
Q ss_pred HhhcCccccEEEccCC
Q 007577 523 FKVVNEALTSIDLAFN 538 (597)
Q Consensus 523 l~~~n~~L~~L~Ls~n 538 (597)
++|++|+|++|
T Consensus 373 -----~~L~~L~L~~N 383 (384)
T d2omza2 373 -----TRITQLGLNDQ 383 (384)
T ss_dssp -----TTCSEEECCCE
T ss_pred -----CCCCEeeCCCC
Confidence 68999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.84 E-value=2.7e-21 Score=197.19 Aligned_cols=304 Identities=20% Similarity=0.186 Sum_probs=222.7
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
.+|++|++++++|++. ..+..+++|++|++++|++++.. .+..+++|++|++++|.+.+.. .
T Consensus 44 ~~l~~L~l~~~~I~~l------~gl~~L~nL~~L~Ls~N~l~~l~------~l~~L~~L~~L~L~~n~i~~i~------~ 105 (384)
T d2omza2 44 DQVTTLQADRLGIKSI------DGVEYLNNLTQINFSNNQLTDIT------PLKNLTKLVDILMNNNQIADIT------P 105 (384)
T ss_dssp TTCCEEECCSSCCCCC------TTGGGCTTCCEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCCCG------G
T ss_pred CCCCEEECCCCCCCCc------cccccCCCCCEEeCcCCcCCCCc------cccCCccccccccccccccccc------c
Confidence 6899999999998752 23567899999999999998752 2667899999999999998742 2
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHH-------------------------------
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALG------------------------------- 318 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~------------------------------- 318 (597)
+..+++|+.|+++++.+++.... .....+..+....+.+....
T Consensus 106 l~~l~~L~~L~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (384)
T d2omza2 106 LANLTNLTGLTLFNNQITDIDPL------KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179 (384)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGG------TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE
T ss_pred ccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccchhhhhcccccccc
Confidence 56779999999999988654321 11223322222111100000
Q ss_pred ------HHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEE
Q 007577 319 ------ANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWI 392 (597)
Q Consensus 319 ------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 392 (597)
..........++.++.+++++|.+++... . ...++|+.|++++|.+++. ..+..+++|++|
T Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~-----~~~~~L~~L~l~~n~l~~~------~~l~~l~~L~~L 246 (384)
T d2omza2 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--L-----GILTNLDELSLNGNQLKDI------GTLASLTNLTDL 246 (384)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--G-----GGCTTCCEEECCSSCCCCC------GGGGGCTTCSEE
T ss_pred ccccccccccccccccccccceeeccCCccCCCCc--c-----cccCCCCEEECCCCCCCCc------chhhcccccchh
Confidence 00001234567899999999998876311 1 2345899999999999883 246789999999
Q ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCC
Q 007577 393 NLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGN 472 (597)
Q Consensus 393 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 472 (597)
++++|.+++. . .+..+++|++|+++++.++... .+..++.++.++++.|.+++. ..+..+++
T Consensus 247 ~l~~n~l~~~-----~-~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~l~~l~~~~n~l~~~------~~~~~~~~ 308 (384)
T d2omza2 247 DLANNQISNL-----A-PLSGLTKLTELKLGANQISNIS------PLAGLTALTNLELNENQLEDI------SPISNLKN 308 (384)
T ss_dssp ECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCCG------GGTTCTTCSEEECCSSCCSCC------GGGGGCTT
T ss_pred ccccCccCCC-----C-cccccccCCEeeccCcccCCCC------ccccccccccccccccccccc------cccchhcc
Confidence 9999998873 1 2667899999999999987632 256679999999999988753 23566799
Q ss_pred cCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHH
Q 007577 473 INTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQAL 552 (597)
Q Consensus 473 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l 552 (597)
+++|++++|++++... +..+++|++|++++|+|++.. .+..+ ++|++|++++|++++..+ +..
T Consensus 309 l~~L~ls~n~l~~l~~------l~~l~~L~~L~L~~n~l~~l~--~l~~l-----~~L~~L~l~~N~l~~l~~--l~~-- 371 (384)
T d2omza2 309 LTYLTLYFNNISDISP------VSSLTKLQRLFFANNKVSDVS--SLANL-----TNINWLSAGHNQISDLTP--LAN-- 371 (384)
T ss_dssp CSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCCCG--GGGGC-----TTCCEEECCSSCCCBCGG--GTT--
T ss_pred cCeEECCCCCCCCCcc------cccCCCCCEEECCCCCCCCCh--hHcCC-----CCCCEEECCCCcCCCChh--hcc--
Confidence 9999999999987532 567899999999999998742 34332 789999999999997432 322
Q ss_pred HhCCCCceeEEEcccCc
Q 007577 553 KANEDVAVTSLNLANNF 569 (597)
Q Consensus 553 ~~~~~~~L~~L~L~~N~ 569 (597)
. .+|+.|+|++|.
T Consensus 372 --l--~~L~~L~L~~Na 384 (384)
T d2omza2 372 --L--TRITQLGLNDQA 384 (384)
T ss_dssp --C--TTCSEEECCCEE
T ss_pred --C--CCCCEeeCCCCc
Confidence 2 359999999983
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.8e-19 Score=175.19 Aligned_cols=196 Identities=18% Similarity=0.221 Sum_probs=88.8
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCC-CCChhHHHHHH
Q 007577 302 STIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNN-SISAKGAFHVA 380 (597)
Q Consensus 302 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~ 380 (597)
.+|++|++++|.++..... ..+..+++|++|++++|.+++..+..+ ..+++|++|++++| .+++.++..+
T Consensus 46 ~~L~~LdLs~~~i~~~~l~---~l~~~c~~L~~L~L~~~~l~~~~~~~l-----~~~~~L~~L~Ls~c~~itd~~l~~l- 116 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLH---GILSQCSKLQNLSLEGLRLSDPIVNTL-----AKNSNLVRLNLSGCSGFSEFALQTL- 116 (284)
T ss_dssp BCCCEEECTTCEECHHHHH---HHHTTBCCCSEEECTTCBCCHHHHHHH-----TTCTTCSEEECTTCBSCCHHHHHHH-
T ss_pred CCCCEEECCCCccCHHHHH---HHHHhCCCcccccccccCCCcHHHHHH-----hcCCCCcCccccccccccccccchh-
Confidence 3555555555554443322 224455555555555555555444433 12335555555553 4554433222
Q ss_pred HHHHcCCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCC--CCChHHHHHHHHHhhcCCCcCEEECcCC-CCC
Q 007577 381 EYIKNCKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGN--NIHSKGASAIARVLKDNSVITSLDLAYN-PIG 456 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 456 (597)
...+++|++|++++| .+++.++...... .++.|++|+++++ .+++.++..+. ..|++|++|++++| .++
T Consensus 117 --~~~~~~L~~L~ls~c~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~i~~~~l~~l~---~~~~~L~~L~L~~~~~it 189 (284)
T d2astb2 117 --LSSCSRLDELNLSWCFDFTEKHVQVAVAH--VSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHLDLSDSVMLK 189 (284)
T ss_dssp --HHHCTTCCEEECCCCTTCCHHHHHHHHHH--SCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEEECTTCTTCC
T ss_pred --hHHHHhccccccccccccccccchhhhcc--cccccchhhhcccccccccccccccc---cccccccccccccccCCC
Confidence 234555555555554 4444433322211 1245555555543 34444433332 22455555555554 344
Q ss_pred HHHHHHHHHHHhhCCCcCEEecCCC-CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHH
Q 007577 457 ADGAKALSEVLKFHGNINTLKLGWC-QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQS 522 (597)
Q Consensus 457 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~ 522 (597)
+.++..+ ..+++|++|++++| .+++.+...+ ..+++|+.|++++| +++.+...+.+.
T Consensus 190 d~~~~~l----~~~~~L~~L~L~~C~~i~~~~l~~L----~~~~~L~~L~l~~~-~~d~~l~~l~~~ 247 (284)
T d2astb2 190 NDCFQEF----FQLNYLQHLSLSRCYDIIPETLLEL----GEIPTLKTLQVFGI-VPDGTLQLLKEA 247 (284)
T ss_dssp GGGGGGG----GGCTTCCEEECTTCTTCCGGGGGGG----GGCTTCCEEECTTS-SCTTCHHHHHHH
T ss_pred chhhhhh----cccCcCCEEECCCCCCCChHHHHHH----hcCCCCCEEeeeCC-CCHHHHHHHHHh
Confidence 4433322 23355555555554 2444433222 23455555555554 444444444433
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=4.7e-19 Score=172.22 Aligned_cols=196 Identities=14% Similarity=0.138 Sum_probs=101.3
Q ss_pred CCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCC-CCCcHHHHHHH
Q 007577 330 KSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMN-DIGDEGAEKIA 408 (597)
Q Consensus 330 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 408 (597)
..|++|++++|.+++..+..+. ..+++|++|++++|.+++. ....+..+++|++|++++| .+++.++..+.
T Consensus 46 ~~L~~LdLs~~~i~~~~l~~l~----~~c~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~ 117 (284)
T d2astb2 46 FRVQHMDLSNSVIEVSTLHGIL----SQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117 (284)
T ss_dssp BCCCEEECTTCEECHHHHHHHH----TTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCCCEEECCCCccCHHHHHHHH----HhCCCcccccccccCCCcH----HHHHHhcCCCCcCccccccccccccccchhh
Confidence 3566666666665555444432 2344566666666666553 2333445566666666664 55555544443
Q ss_pred HHHhcCCCccEEEccCC-CCChHHHHHHHHHhhcCCCcCEEECcCC--CCCHHHHHHHHHHHhhCCCcCEEecCCCC-CC
Q 007577 409 DALKQNRTITTIDLGGN-NIHSKGASAIARVLKDNSVITSLDLAYN--PIGADGAKALSEVLKFHGNINTLKLGWCQ-IG 484 (597)
Q Consensus 409 ~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~ 484 (597)
. .+++|++|++++| .+++.+...... ..++.|+.|+++++ .+++.++..+ ...+++|++|++++|. ++
T Consensus 118 ~---~~~~L~~L~ls~c~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~i~~~~l~~l---~~~~~~L~~L~L~~~~~it 189 (284)
T d2astb2 118 S---SCSRLDELNLSWCFDFTEKHVQVAVA--HVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLK 189 (284)
T ss_dssp H---HCTTCCEEECCCCTTCCHHHHHHHHH--HSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCC
T ss_pred H---HHHhccccccccccccccccchhhhc--ccccccchhhhccccccccccccccc---ccccccccccccccccCCC
Confidence 2 2456666666664 455544433221 12355666666654 3455443333 2335566666666553 55
Q ss_pred hhHHHHHHHHHhcCCCccEEEccCC-CCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHH
Q 007577 485 ASGAEFVADMLRYNNTISILDLRAN-GLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQA 551 (597)
Q Consensus 485 ~~~~~~l~~~l~~~~~L~~L~l~~n-~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~ 551 (597)
+.+...+ ..+++|++|++++| .|++.++..+++. ++|+.|++++| +++.+...+...
T Consensus 190 d~~~~~l----~~~~~L~~L~L~~C~~i~~~~l~~L~~~-----~~L~~L~l~~~-~~d~~l~~l~~~ 247 (284)
T d2astb2 190 NDCFQEF----FQLNYLQHLSLSRCYDIIPETLLELGEI-----PTLKTLQVFGI-VPDGTLQLLKEA 247 (284)
T ss_dssp GGGGGGG----GGCTTCCEEECTTCTTCCGGGGGGGGGC-----TTCCEEECTTS-SCTTCHHHHHHH
T ss_pred chhhhhh----cccCcCCEEECCCCCCCChHHHHHHhcC-----CCCCEEeeeCC-CCHHHHHHHHHh
Confidence 5443332 23466666666664 5565555444332 55666666655 555555555443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.64 E-value=3.7e-18 Score=167.94 Aligned_cols=225 Identities=21% Similarity=0.213 Sum_probs=102.2
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAEL 269 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~ 269 (597)
++++.|+|++|+|+... ...+.++++|++|++++|.+.... +..+..+++|++|++++|+++.. +..
T Consensus 31 ~~l~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~l~~n~~~~i~----~~~f~~l~~L~~L~l~~n~l~~l-----~~~ 97 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKEL-----PEK 97 (305)
T ss_dssp TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBC-----CSS
T ss_pred CCCCEEECcCCcCCCcC----hhHhhccccccccccccccccccc----hhhhhCCCccCEecccCCccCcC-----ccc
Confidence 34555555555554321 112334455555555555554331 12233345555555555555432 111
Q ss_pred HHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHH
Q 007577 270 LKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRA 349 (597)
Q Consensus 270 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 349 (597)
....++.|++.+|.+.... ...+.....+..++...+....... ....+..+++|+.+++++|.+...
T Consensus 98 --~~~~l~~L~~~~n~l~~l~----~~~~~~~~~~~~l~~~~n~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l---- 165 (305)
T d1xkua_ 98 --MPKTLQELRVHENEITKVR----KSVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTI---- 165 (305)
T ss_dssp --CCTTCCEEECCSSCCCBBC----HHHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCSC----
T ss_pred --hhhhhhhhhccccchhhhh----hhhhhccccccccccccccccccCC--CccccccccccCccccccCCcccc----
Confidence 1234555555555554321 1122234445555555443322111 012244555566666666554431
Q ss_pred HHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCCh
Q 007577 350 LMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHS 429 (597)
Q Consensus 350 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 429 (597)
.. ...++|+.|++++|.++.. .+..+..++.+++|++++|.+++. ....+..+++|++|+|++|.|+.
T Consensus 166 -~~---~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~ 233 (305)
T d1xkua_ 166 -PQ---GLPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK 233 (305)
T ss_dssp -CS---SCCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred -Cc---ccCCccCEEECCCCcCCCC----ChhHhhcccccccccccccccccc----ccccccccccceeeecccccccc
Confidence 11 1123555666665555442 223344555566666666555542 11233345555555555555543
Q ss_pred HHHHHHHHHhhcCCCcCEEECcCCCCC
Q 007577 430 KGASAIARVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 430 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 456 (597)
++..+..+++|++|+|++|+|+
T Consensus 234 -----lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 234 -----VPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp -----CCTTTTTCSSCCEEECCSSCCC
T ss_pred -----cccccccccCCCEEECCCCccC
Confidence 2223444455555555555544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.62 E-value=1.6e-17 Score=163.26 Aligned_cols=253 Identities=19% Similarity=0.235 Sum_probs=184.1
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
+++++|+|++|+|+... ...|..+++|++|++++|.+.... ...+..+++|++|++++|+++... ..
T Consensus 31 ~~l~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~l~~n~~~~i~----~~~f~~l~~L~~L~l~~n~l~~l~-----~~ 97 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELP-----EK 97 (305)
T ss_dssp TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBCC-----SS
T ss_pred CCCCEEECcCCcCCCcC----hhHhhccccccccccccccccccc----hhhhhCCCccCEecccCCccCcCc-----cc
Confidence 67999999999987531 135778899999999999887542 234567899999999999987642 11
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
....++.|.+.+|.+..... ..+.....+..++...+....... ....+..+++|+.+++++|.+...+.
T Consensus 98 --~~~~l~~L~~~~n~l~~l~~----~~~~~~~~~~~l~~~~n~~~~~~~--~~~~~~~l~~L~~l~l~~n~l~~l~~-- 167 (305)
T d1xkua_ 98 --MPKTLQELRVHENEITKVRK----SVFNGLNQMIVVELGTNPLKSSGI--ENGAFQGMKKLSYIRIADTNITTIPQ-- 167 (305)
T ss_dssp --CCTTCCEEECCSSCCCBBCH----HHHTTCTTCCEEECCSSCCCGGGB--CTTGGGGCTTCCEEECCSSCCCSCCS--
T ss_pred --hhhhhhhhhccccchhhhhh----hhhhccccccccccccccccccCC--CccccccccccCccccccCCccccCc--
Confidence 24789999999999887533 234445778889988886543321 13345678899999999998876432
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
..+++|++|++++|.+.......+ ..++.++.|++++|.++.. .+..+..+++|++|+|++|.|+.
T Consensus 168 -----~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~l~~L~~s~n~l~~~----~~~~~~~l~~L~~L~L~~N~L~~ 233 (305)
T d1xkua_ 168 -----GLPPSLTELHLDGNKITKVDAASL-----KGLNNLAKLGLSFNSISAV----DNGSLANTPHLRELHLNNNKLVK 233 (305)
T ss_dssp -----SCCTTCSEEECTTSCCCEECTGGG-----TTCTTCCEEECCSSCCCEE----CTTTGGGSTTCCEEECCSSCCSS
T ss_pred -----ccCCccCEEECCCCcCCCCChhHh-----hcccccccccccccccccc----ccccccccccceeeecccccccc
Confidence 236789999999998776432222 4556899999999999883 34567789999999999999875
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHH--HHhhcCCCcCEEECcCCCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIA--RVLKDNSVITSLDLAYNPIG 456 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--~~l~~~~~L~~L~Ls~n~i~ 456 (597)
++.++..+++|++|+|++|+|+..+...+. ......+.|+.|+|++|++.
T Consensus 234 -----lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 234 -----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp -----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred -----cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 555677899999999999998874322221 11223356777777777654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.57 E-value=6.6e-19 Score=174.08 Aligned_cols=62 Identities=15% Similarity=0.218 Sum_probs=27.1
Q ss_pred CCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEecc-CCCCHHHHHHHHHHhhhCCCccEEEccCCCC
Q 007577 163 AFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAA-NGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (597)
Q Consensus 163 ~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~-~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (597)
++++|+|+++.+... ..++..+..+++|++|+|++ |.++. .++..+.++++|++|+|++|++
T Consensus 51 ~v~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g----~iP~~i~~L~~L~~L~Ls~N~l 113 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNV 113 (313)
T ss_dssp CEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECC
T ss_pred EEEEEECCCCCCCCC--CCCChHHhcCcccccccccccccccc----ccccccccccccchhhhccccc
Confidence 456666666554321 01233444455555555544 33321 1222333444444444444444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.57 E-value=9.6e-19 Score=172.90 Aligned_cols=251 Identities=13% Similarity=0.183 Sum_probs=184.0
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccC-CCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSG-NPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAE 268 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~ 268 (597)
.+++.|+|+++.++.. ..++..+.++++|++|+|++ |.+... ++..+.++++|++|+|++|++... ...
T Consensus 50 ~~v~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g~----iP~~i~~L~~L~~L~Ls~N~l~~~----~~~ 119 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQLHYLYITHTNVSGA----IPD 119 (313)
T ss_dssp CCEEEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESC----CCGGGGGCTTCSEEEEEEECCEEE----CCG
T ss_pred EEEEEEECCCCCCCCC--CCCChHHhcCccccccccccccccccc----cccccccccccchhhhcccccccc----ccc
Confidence 4799999999987632 12445678899999999986 777543 556677889999999999998764 233
Q ss_pred HHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCC-CEEEccCCCCChHHH
Q 007577 269 LLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKGLEGNKSL-RELHLHGNSIGDEGI 347 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~ 347 (597)
.+..+..|+.+++++|.+.. .++..+..++.++.+++++|.+.... +..+..+..+ +.+++++|+++....
T Consensus 120 ~~~~~~~L~~l~l~~N~~~~----~~p~~l~~l~~L~~l~l~~n~l~~~i----p~~~~~l~~l~~~l~~~~n~l~~~~~ 191 (313)
T d1ogqa_ 120 FLSQIKTLVTLDFSYNALSG----TLPPSISSLPNLVGITFDGNRISGAI----PDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp GGGGCTTCCEEECCSSEEES----CCCGGGGGCTTCCEEECCSSCCEEEC----CGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred cccchhhhcccccccccccc----cCchhhccCcccceeecccccccccc----cccccccccccccccccccccccccc
Confidence 45567899999999997652 23456778999999999999876421 2335566665 889999998765322
Q ss_pred HHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 348 RALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 348 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
..+ ... .+..+++..+..... ++..+..+++++.+++++|.+... + ..+..+++|+.|+|++|++
T Consensus 192 ~~~-----~~l-~~~~l~l~~~~~~~~----~~~~~~~~~~l~~l~~~~~~l~~~----~-~~~~~~~~L~~L~Ls~N~l 256 (313)
T d1ogqa_ 192 PTF-----ANL-NLAFVDLSRNMLEGD----ASVLFGSDKNTQKIHLAKNSLAFD----L-GKVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp GGG-----GGC-CCSEEECCSSEEEEC----CGGGCCTTSCCSEEECCSSEECCB----G-GGCCCCTTCCEEECCSSCC
T ss_pred ccc-----ccc-ccccccccccccccc----cccccccccccccccccccccccc----c-cccccccccccccCccCee
Confidence 212 122 456788888866552 455566788999999999987653 2 2356678999999999999
Q ss_pred ChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCC
Q 007577 428 HSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQ 482 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 482 (597)
+.. ++..+.++++|++|+|++|+++..- ++ +..+++|+.+++++|+
T Consensus 257 ~g~----iP~~l~~L~~L~~L~Ls~N~l~g~i----P~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 257 YGT----LPQGLTQLKFLHSLNVSFNNLCGEI----PQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEC----CCGGGGGCTTCCEEECCSSEEEEEC----CC-STTGGGSCGGGTCSSS
T ss_pred ccc----CChHHhCCCCCCEEECcCCcccccC----CC-cccCCCCCHHHhCCCc
Confidence 853 4556778899999999999886431 11 2345788999999997
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.57 E-value=2.4e-14 Score=126.47 Aligned_cols=124 Identities=12% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCCCcEEEccCC-CCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHH
Q 007577 386 CKSLLWINLYMN-DIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALS 464 (597)
Q Consensus 386 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 464 (597)
.++|++|+|+++ .++++++..+..++..+++|++|+|++|.+++.++..++..+..++.|++|+|++|.|++.|+..+.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 455555555542 4555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCcCEEecCCCC---CChhHHHHHHHHHhcCCCccEEEccCC
Q 007577 465 EVLKFHGNINTLKLGWCQ---IGASGAEFVADMLRYNNTISILDLRAN 509 (597)
Q Consensus 465 ~~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~l~~n 509 (597)
+.+..+++|++|++++|. +++.+...++.++..+++|++|+++.+
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 555555555555555442 333444445555555555555554443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1e-16 Score=154.10 Aligned_cols=176 Identities=22% Similarity=0.201 Sum_probs=81.5
Q ss_pred CccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHH
Q 007577 219 ALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEAL 298 (597)
Q Consensus 219 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 298 (597)
++++|+|++|.|+.... ..+..+++|++|+|++|+|+... ....+++|++|++++|+++.. ...+
T Consensus 32 ~l~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~L~~N~l~~l~------~~~~l~~L~~L~Ls~N~l~~~-----~~~~ 96 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQ------VDGTLPVLGTLDLSHNQLQSL-----PLLG 96 (266)
T ss_dssp TCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEE------CCSCCTTCCEEECCSSCCSSC-----CCCT
T ss_pred CCCEEECcCCcCCCcCH----HHhhccccccccccccccccccc------ccccccccccccccccccccc-----cccc
Confidence 45555555555544321 12233455555555555554321 112345566666666555321 1223
Q ss_pred hhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHH
Q 007577 299 LENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFH 378 (597)
Q Consensus 299 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 378 (597)
..+++|+.|++++|.+..... ..+..++++++|++++|.+... ........++++.|++++|+++..
T Consensus 97 ~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~l~~L~l~~n~l~~l-----~~~~~~~l~~l~~l~l~~N~l~~~---- 163 (266)
T d1p9ag_ 97 QTLPALTVLDVSFNRLTSLPL----GALRGLGELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANNNLTEL---- 163 (266)
T ss_dssp TTCTTCCEEECCSSCCCCCCS----STTTTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTSCCSCC----
T ss_pred ccccccccccccccccceeec----ccccccccccccccccccccee-----ccccccccccchhccccccccccc----
Confidence 344555555555555443222 1233445566666666555431 112222334555555555555541
Q ss_pred HHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 379 VAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 379 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
.+..+..+++|++|+|++|.|+. ++..+..++.|+.|+|++|.+
T Consensus 164 ~~~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 164 PAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCB
T ss_pred CccccccccccceeecccCCCcc-----cChhHCCCCCCCEEEecCCCC
Confidence 22234445555555555555543 333333445555555555544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.55 E-value=5.3e-14 Score=124.20 Aligned_cols=135 Identities=13% Similarity=0.200 Sum_probs=105.7
Q ss_pred HHHHHHHHhcCCCcEEEcCC-CCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCC
Q 007577 152 QTLNEFAKELRAFSSVDMSG-RNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPI 230 (597)
Q Consensus 152 ~~l~~~~~~~~~L~~L~Ls~-~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 230 (597)
+.+.++..+.++|++|+|++ +.+++.++..++.++..+++|++|+|++|.+++.+...++..+..++.|++|+|++|.+
T Consensus 5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i 84 (167)
T d1pgva_ 5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 84 (167)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence 34555666678888888887 46888888888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHhcCCCcCEEEecCCC---CChHHHHHHHHHHHcCCCccEEEeccCCC
Q 007577 231 GDEGVKCLCDILVDNAGVERLQLSSVD---LRDEGAKAIAELLKNNSILRVLELNNNMI 286 (597)
Q Consensus 231 ~~~~~~~l~~~l~~~~~L~~L~Ls~~~---l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 286 (597)
++.++..++..+..++.|++|++++|. +++.+...++.++..+++|++|+++++..
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 888888888888888888888887763 55667777888888788888888776543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=4.1e-16 Score=149.78 Aligned_cols=212 Identities=20% Similarity=0.143 Sum_probs=151.1
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
..+.+++.+++.++. ++..+ .+++++|+|++|.|+.... ..+..+++|++|+|++|.++... .
T Consensus 10 ~~~~~v~C~~~~L~~-----iP~~l--p~~l~~L~Ls~N~i~~l~~----~~f~~l~~L~~L~L~~N~l~~l~------~ 72 (266)
T d1p9ag_ 10 ASHLEVNCDKRNLTA-----LPPDL--PKDTTILHLSENLLYTFSL----ATLMPYTRLTQLNLDRAELTKLQ------V 72 (266)
T ss_dssp TTCCEEECTTSCCSS-----CCSCC--CTTCCEEECTTSCCSEEEG----GGGTTCTTCCEEECTTSCCCEEE------C
T ss_pred CCCeEEEccCCCCCe-----eCcCc--CcCCCEEECcCCcCCCcCH----HHhhccccccccccccccccccc------c
Confidence 445667888877764 23222 2578999999998875432 34567788999999999887542 1
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
+..+++|++|++++|+++.. ...+..+++|+.|++++|.+.... ...+..+.++++|++++|.+.....
T Consensus 73 ~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~l~~L~l~~n~l~~l~~-- 141 (266)
T d1p9ag_ 73 DGTLPVLGTLDLSHNQLQSL-----PLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPP-- 141 (266)
T ss_dssp CSCCTTCCEEECCSSCCSSC-----CCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCT--
T ss_pred cccccccccccccccccccc-----ccccccccccccccccccccceee----ccccccccccccccccccccceecc--
Confidence 23468899999999988752 334556788999999998875322 2233457889999999998876554
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC-
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG- 400 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~- 400 (597)
..+..++.++.|++++|+++.... .....+++|+.|+|++|+|+. ++..+..+++|+.|+|++|.+.
T Consensus 142 --~~~~~l~~l~~l~l~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~L~~-----lp~~~~~~~~L~~L~L~~Np~~C 209 (266)
T d1p9ag_ 142 --GLLTPTPKLEKLSLANNNLTELPA-----GLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLC 209 (266)
T ss_dssp --TTTTTCTTCCEEECTTSCCSCCCT-----TTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCC
T ss_pred --ccccccccchhcccccccccccCc-----cccccccccceeecccCCCcc-----cChhHCCCCCCCEEEecCCCCCC
Confidence 345678899999999999876422 222456689999999999987 6666677899999999999775
Q ss_pred cHHHHHHHHHHhc
Q 007577 401 DEGAEKIADALKQ 413 (597)
Q Consensus 401 ~~~~~~l~~~l~~ 413 (597)
+-.+..+..++.+
T Consensus 210 dC~~~~l~~wl~~ 222 (266)
T d1p9ag_ 210 NCEILYFRRWLQD 222 (266)
T ss_dssp SGGGHHHHHHHHH
T ss_pred CcchHHHHHHHHh
Confidence 3233445555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.52 E-value=1.8e-13 Score=120.82 Aligned_cols=127 Identities=26% Similarity=0.265 Sum_probs=75.1
Q ss_pred HcCCCCcEEEccC-CCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHH
Q 007577 384 KNCKSLLWINLYM-NDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKA 462 (597)
Q Consensus 384 ~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 462 (597)
...++|++|+|++ +.+++.++..++.++..+++|++|++++|.+++.++..++..+..++.++.+++++|.++++++..
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 3445666666655 356666666666666656666666666666666666666666665666666666666666666666
Q ss_pred HHHHHhhCCCcCEEec--CCCCCChhHHHHHHHHHhcCCCccEEEccCCC
Q 007577 463 LSEVLKFHGNINTLKL--GWCQIGASGAEFVADMLRYNNTISILDLRANG 510 (597)
Q Consensus 463 l~~~l~~~~~L~~L~L--~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~ 510 (597)
+.+.+..+++|+.++| ++|.+++.+...++.++..+++|++|++..+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 6666666666655444 33455566656666666666666666655443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.51 E-value=9.8e-14 Score=122.53 Aligned_cols=135 Identities=18% Similarity=0.257 Sum_probs=101.3
Q ss_pred HHHHhhhcCccccceeeccC-CCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 349 ALMSGLSSRKGKLAVLDIGN-NSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 349 ~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
.+...+....+.|++|++++ +.+++.++..+...+..+++|++|+|++|.++++++..++..+..++.++.+++++|.+
T Consensus 7 ~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~ 86 (166)
T d1io0a_ 7 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 86 (166)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence 34444445556777777776 46777777777777777778888888888888888888888777778888888888888
Q ss_pred ChHHHHHHHHHhhcCCCcCEEEC--cCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCC
Q 007577 428 HSKGASAIARVLKDNSVITSLDL--AYNPIGADGAKALSEVLKFHGNINTLKLGWCQI 483 (597)
Q Consensus 428 ~~~~~~~l~~~l~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 483 (597)
++.++..+...+..++.|+.++| ++|.+++++...+...+..+++|++|+++.+..
T Consensus 87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 88888888888888888876554 456788888888888888888888888876654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=8.2e-15 Score=136.95 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=6.9
Q ss_pred cCCCCcEEEccCCCCC
Q 007577 385 NCKSLLWINLYMNDIG 400 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~ 400 (597)
.+++|++|+|++|.++
T Consensus 171 ~l~~L~~L~Ls~n~l~ 186 (227)
T d1h6ua2 171 NLSKLTTLKADDNKIS 186 (227)
T ss_dssp TCTTCCEEECCSSCCC
T ss_pred ccccceecccCCCccC
Confidence 3444444444444443
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=9.9e-17 Score=155.83 Aligned_cols=111 Identities=20% Similarity=0.129 Sum_probs=48.1
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHHH
Q 007577 414 NRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVAD 493 (597)
Q Consensus 414 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 493 (597)
.++|+.+++++|.|+.... ..+..+++|++|++++|.+..... ..+..+++|+.+++++|+++...+..
T Consensus 128 ~~~L~~l~l~~N~l~~i~~----~~f~~~~~L~~L~l~~N~l~~l~~----~~f~~l~~L~~l~l~~N~l~~i~~~~--- 196 (284)
T d1ozna_ 128 LAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQNRVAHVHPHA--- 196 (284)
T ss_dssp CTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCCEECTTT---
T ss_pred hcccchhhhccccccccCh----hHhccccchhhcccccCcccccch----hhhccccccchhhhhhccccccChhH---
Confidence 3445555555554443211 112333445555555554432211 12223345555555555544432222
Q ss_pred HHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCC
Q 007577 494 MLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIR 541 (597)
Q Consensus 494 ~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~ 541 (597)
+..+++|++|++++|.+.......+... ++|++|++++|.+.
T Consensus 197 -f~~l~~L~~L~l~~N~i~~~~~~~~~~~-----~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 197 -FRDLGRLMTLYLFANNLSALPTEALAPL-----RALQYLRLNDNPWV 238 (284)
T ss_dssp -TTTCTTCCEEECCSSCCSCCCHHHHTTC-----TTCCEEECCSSCEE
T ss_pred -hhhhhhcccccccccccccccccccccc-----cccCEEEecCCCCC
Confidence 2333555555555555554443333332 44555555555443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.51 E-value=1.5e-14 Score=135.19 Aligned_cols=80 Identities=25% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHHHHHH
Q 007577 246 AGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANALAKG 325 (597)
Q Consensus 246 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 325 (597)
.+|++|++.+|.|++. ..+..+++|++|++++|++++. ..+..+++++.+++++|.++... .
T Consensus 41 ~~L~~L~l~~~~i~~l------~~l~~l~~L~~L~ls~n~i~~~------~~l~~l~~l~~l~~~~n~~~~i~------~ 102 (227)
T d1h6ua2 41 DGITTLSAFGTGVTTI------EGVQYLNNLIGLELKDNQITDL------APLKNLTKITELELSGNPLKNVS------A 102 (227)
T ss_dssp HTCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCC------GGGTTCCSCCEEECCSCCCSCCG------G
T ss_pred CCcCEEECCCCCCCcc------hhHhcCCCCcEeecCCceeecc------ccccccccccccccccccccccc------c
Confidence 5677777777776652 1245567777777777766542 11445666666666666655432 2
Q ss_pred hhcCCCCCEEEccCCCCC
Q 007577 326 LEGNKSLRELHLHGNSIG 343 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n~i~ 343 (597)
+..+++|+.++++++.+.
T Consensus 103 l~~l~~L~~l~l~~~~~~ 120 (227)
T d1h6ua2 103 IAGLQSIKTLDLTSTQIT 120 (227)
T ss_dssp GTTCTTCCEEECTTSCCC
T ss_pred cccccccccccccccccc
Confidence 445666666666665543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1e-15 Score=148.50 Aligned_cols=84 Identities=23% Similarity=0.201 Sum_probs=35.2
Q ss_pred ccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHh
Q 007577 360 KLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVL 439 (597)
Q Consensus 360 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 439 (597)
+|+.|++++|.++.. .+..+..+++|+++++++|.+++. .+..+..+++|++|++++|.+..... ..+
T Consensus 154 ~L~~L~l~~N~l~~l----~~~~f~~l~~L~~l~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~i~~~~~----~~~ 221 (284)
T d1ozna_ 154 NLTHLFLHGNRISSV----PERAFRGLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSALPT----EAL 221 (284)
T ss_dssp TCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCCCH----HHH
T ss_pred chhhcccccCccccc----chhhhccccccchhhhhhcccccc----ChhHhhhhhhcccccccccccccccc----ccc
Confidence 444444444444431 122334444455555555544432 12233334444555555544444321 122
Q ss_pred hcCCCcCEEECcCCCC
Q 007577 440 KDNSVITSLDLAYNPI 455 (597)
Q Consensus 440 ~~~~~L~~L~Ls~n~i 455 (597)
..+++|++|++++|++
T Consensus 222 ~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 222 APLRALQYLRLNDNPW 237 (284)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred ccccccCEEEecCCCC
Confidence 3334455555554433
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=3.3e-14 Score=130.88 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=7.9
Q ss_pred hcCCCCCEEEccCCCCC
Q 007577 327 EGNKSLRELHLHGNSIG 343 (597)
Q Consensus 327 ~~~~~L~~L~Ls~n~i~ 343 (597)
..++.++.+++++|.++
T Consensus 131 ~~l~~l~~l~~~~n~l~ 147 (210)
T d1h6ta2 131 VHLPQLESLYLGNNKIT 147 (210)
T ss_dssp GGCTTCCEEECCSSCCC
T ss_pred ccccccccccccccccc
Confidence 34444455555444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=5.8e-14 Score=128.09 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=7.7
Q ss_pred cCCCccEEEccCCCCCh
Q 007577 413 QNRTITTIDLGGNNIHS 429 (597)
Q Consensus 413 ~~~~L~~L~L~~n~l~~ 429 (597)
.+++|++|++++|+|++
T Consensus 170 ~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 170 NLTTLERLDISSNKVSD 186 (199)
T ss_dssp TCTTCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCCCCC
Confidence 34444444444444443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.43 E-value=9.3e-14 Score=127.84 Aligned_cols=16 Identities=25% Similarity=0.139 Sum_probs=7.3
Q ss_pred cCCCccEEEeccCCCC
Q 007577 272 NNSILRVLELNNNMID 287 (597)
Q Consensus 272 ~~~~L~~L~Ls~n~i~ 287 (597)
.+++|++|++++|+|+
T Consensus 66 ~l~~L~~L~L~~n~i~ 81 (210)
T d1h6ta2 66 YLPNVTKLFLNGNKLT 81 (210)
T ss_dssp GCTTCCEEECCSSCCC
T ss_pred hCCCCCEEeCCCcccc
Confidence 3344444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.40 E-value=1.9e-13 Score=124.55 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred HcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCH
Q 007577 384 KNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGA 457 (597)
Q Consensus 384 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 457 (597)
..+++|+.|++++|.+... ..+..+++|++|++.+|.+++.. .+.++++|++|++++|++++
T Consensus 125 ~~l~~L~~L~l~~n~l~~~------~~l~~~~~L~~L~l~~n~l~~l~------~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 125 KNLTNLNRLELSSNTISDI------SALSGLTSLQQLNFSSNQVTDLK------PLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp TTCTTCSEEECCSSCCCCC------GGGTTCTTCSEEECCSSCCCCCG------GGTTCTTCCEEECCSSCCCC
T ss_pred chhhhhHHhhhhhhhhccc------ccccccccccccccccccccCCc------cccCCCCCCEEECCCCCCCC
Confidence 3455555555555555431 12334455555555555554421 13444555555555555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.33 E-value=2.1e-13 Score=135.88 Aligned_cols=302 Identities=18% Similarity=0.180 Sum_probs=183.3
Q ss_pred CCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHH
Q 007577 162 RAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDI 241 (597)
Q Consensus 162 ~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 241 (597)
.++++|||+++.++. +++. .++|++|++++|+|+.. +. ...+|++|++++|.++... ..
T Consensus 38 ~~l~~LdLs~~~L~~-----lp~~---~~~L~~L~Ls~N~l~~l-----p~---~~~~L~~L~l~~n~l~~l~-----~l 96 (353)
T d1jl5a_ 38 RQAHELELNNLGLSS-----LPEL---PPHLESLVASCNSLTEL-----PE---LPQSLKSLLVDNNNLKALS-----DL 96 (353)
T ss_dssp HTCSEEECTTSCCSC-----CCSC---CTTCSEEECCSSCCSSC-----CC---CCTTCCEEECCSSCCSCCC-----SC
T ss_pred cCCCEEEeCCCCCCC-----CCCC---CCCCCEEECCCCCCccc-----cc---chhhhhhhhhhhcccchhh-----hh
Confidence 579999999998864 3322 47899999999998742 22 2357999999999887531 11
Q ss_pred HhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHHHH
Q 007577 242 LVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGANA 321 (597)
Q Consensus 242 l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 321 (597)
.+.|++|++++|.++.. +. ...+++|++|+++++.+.... .....+..+.+..+......
T Consensus 97 ---p~~L~~L~L~~n~l~~l-----p~-~~~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~~~~~~~~~~--- 156 (353)
T d1jl5a_ 97 ---PPLLEYLGVSNNQLEKL-----PE-LQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEELP--- 156 (353)
T ss_dssp ---CTTCCEEECCSSCCSSC-----CC-CTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSCC---
T ss_pred ---ccccccccccccccccc-----cc-hhhhccceeeccccccccccc--------cccccccchhhccccccccc---
Confidence 25699999999998763 22 345688999999998875321 12457778888776544321
Q ss_pred HHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCc
Q 007577 322 LAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGD 401 (597)
Q Consensus 322 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 401 (597)
.+..++.++.|++++|.+.... ......+.+...++.+.. + ..+..++.|+.+++++|....
T Consensus 157 ---~l~~l~~l~~L~l~~n~~~~~~---------~~~~~~~~l~~~~~~~~~-----~-~~~~~l~~L~~l~l~~n~~~~ 218 (353)
T d1jl5a_ 157 ---ELQNLPFLTAIYADNNSLKKLP---------DLPLSLESIVAGNNILEE-----L-PELQNLPFLTTIYADNNLLKT 218 (353)
T ss_dssp ---CCTTCTTCCEEECCSSCCSSCC---------CCCTTCCEEECCSSCCSS-----C-CCCTTCTTCCEEECCSSCCSS
T ss_pred ---cccccccceecccccccccccc---------cccccccccccccccccc-----c-ccccccccccccccccccccc
Confidence 2456778899999888765410 111245566666655443 1 113457788888888886543
Q ss_pred HHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCC
Q 007577 402 EGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWC 481 (597)
Q Consensus 402 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n 481 (597)
. + ....++..+.+.++.+... ....+.+...++..+.+... . .........++..+
T Consensus 219 ~-----~---~~~~~l~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~l--~------~l~~~~~~~~~~~~ 274 (353)
T d1jl5a_ 219 L-----P---DLPPSLEALNVRDNYLTDL--------PELPQSLTFLDVSENIFSGL--S------ELPPNLYYLNASSN 274 (353)
T ss_dssp C-----C---SCCTTCCEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSEE--S------CCCTTCCEEECCSS
T ss_pred c-----c---ccccccccccccccccccc--------cccccccccccccccccccc--c------cccchhcccccccC
Confidence 1 1 1245677888887776542 11124566666666544321 0 00124455555555
Q ss_pred CCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCChHHHHHHHHHHHhCCCCcee
Q 007577 482 QIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRDDGAFAIAQALKANEDVAVT 561 (597)
Q Consensus 482 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~~L~ 561 (597)
.+.... ..+++|++|++++|.|.... . .-++|+.|++++|+|+... .. . .+|+
T Consensus 275 ~~~~~~--------~~~~~L~~L~Ls~N~l~~lp-----~----~~~~L~~L~L~~N~L~~l~-----~~---~--~~L~ 327 (353)
T d1jl5a_ 275 EIRSLC--------DLPPSLEELNVSNNKLIELP-----A----LPPRLERLIASFNHLAEVP-----EL---P--QNLK 327 (353)
T ss_dssp CCSEEC--------CCCTTCCEEECCSSCCSCCC-----C----CCTTCCEEECCSSCCSCCC-----CC---C--TTCC
T ss_pred cccccc--------ccCCCCCEEECCCCccCccc-----c----ccCCCCEEECCCCcCCccc-----cc---c--CCCC
Confidence 554321 12356777777777665421 0 1155777777777666421 00 1 1377
Q ss_pred EEEcccCccchh
Q 007577 562 SLNLANNFLTKF 573 (597)
Q Consensus 562 ~L~L~~N~i~~~ 573 (597)
+|+|++|+++..
T Consensus 328 ~L~L~~N~L~~l 339 (353)
T d1jl5a_ 328 QLHVEYNPLREF 339 (353)
T ss_dssp EEECCSSCCSSC
T ss_pred EEECcCCcCCCC
Confidence 777777776654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.19 E-value=2.1e-11 Score=120.95 Aligned_cols=280 Identities=16% Similarity=0.146 Sum_probs=176.2
Q ss_pred cCCCcEEEcCCCCCCHHHHHHHHHHhccCCCccEEEeccCCCCHHHHHHHHHHhhhC-CCccEEEccCCCCChhHHHHHH
Q 007577 161 LRAFSSVDMSGRNFGDEGLFFLAESLGYNQTAEEVSFAANGITAAGIKAFDGVLQSN-IALKTLNLSGNPIGDEGVKCLC 239 (597)
Q Consensus 161 ~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~ 239 (597)
.++|++|++++|+|+. ++. ...+|++|++++|.++.. ... +.|++|++++|.+... +
T Consensus 57 ~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l---------~~lp~~L~~L~L~~n~l~~l-----p 114 (353)
T d1jl5a_ 57 PPHLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKAL---------SDLPPLLEYLGVSNNQLEKL-----P 114 (353)
T ss_dssp CTTCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCC---------CSCCTTCCEEECCSSCCSSC-----C
T ss_pred CCCCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchh---------hhhccccccccccccccccc-----c
Confidence 4789999999999875 232 246899999999987642 122 3699999999998764 2
Q ss_pred HHHhcCCCcCEEEecCCCCChHHHHHHHHHHHcCCCccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCCChHHH
Q 007577 240 DILVDNAGVERLQLSSVDLRDEGAKAIAELLKNNSILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYGGALGA 319 (597)
Q Consensus 240 ~~l~~~~~L~~L~Ls~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 319 (597)
....+++|++|+++++.+.... .....+..+.+.++..... ..+..++.++.+.+.+|......
T Consensus 115 -~~~~l~~L~~L~l~~~~~~~~~--------~~~~~l~~l~~~~~~~~~~------~~l~~l~~l~~L~l~~n~~~~~~- 178 (353)
T d1jl5a_ 115 -ELQNSSFLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKKLP- 178 (353)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSSC------CCCTTCTTCCEEECCSSCCSSCC-
T ss_pred -chhhhccceeeccccccccccc--------cccccccchhhcccccccc------ccccccccceecccccccccccc-
Confidence 2345799999999999876531 1135678888877765431 12345778899999988765321
Q ss_pred HHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCC
Q 007577 320 NALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDI 399 (597)
Q Consensus 320 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 399 (597)
......+.+...++.+... .. . ..++.|+.+++++|.... ++ ....++..+.+.++.+
T Consensus 179 -------~~~~~~~~l~~~~~~~~~~-----~~-~-~~l~~L~~l~l~~n~~~~-----~~---~~~~~l~~~~~~~~~~ 236 (353)
T d1jl5a_ 179 -------DLPLSLESIVAGNNILEEL-----PE-L-QNLPFLTTIYADNNLLKT-----LP---DLPPSLEALNVRDNYL 236 (353)
T ss_dssp -------CCCTTCCEEECCSSCCSSC-----CC-C-TTCTTCCEEECCSSCCSS-----CC---SCCTTCCEEECCSSCC
T ss_pred -------ccccccccccccccccccc-----cc-c-cccccccccccccccccc-----cc---cccccccccccccccc
Confidence 1223455666665554331 00 0 234578888888876554 11 2345677888887766
Q ss_pred CcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC-CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEec
Q 007577 400 GDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN-SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKL 478 (597)
Q Consensus 400 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 478 (597)
.+. ......+...++..+.+.. +... ......++..+.+... ...+++|++|++
T Consensus 237 ~~~--------~~~~~~l~~~~~~~~~~~~---------l~~l~~~~~~~~~~~~~~~~~--------~~~~~~L~~L~L 291 (353)
T d1jl5a_ 237 TDL--------PELPQSLTFLDVSENIFSG---------LSELPPNLYYLNASSNEIRSL--------CDLPPSLEELNV 291 (353)
T ss_dssp SCC--------CCCCTTCCEEECCSSCCSE---------ESCCCTTCCEEECCSSCCSEE--------CCCCTTCCEEEC
T ss_pred ccc--------ccccccccccccccccccc---------cccccchhcccccccCccccc--------cccCCCCCEEEC
Confidence 542 1123456667766665443 1111 3445666666655432 122467888888
Q ss_pred CCCCCChhHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHHhhcCccccEEEccCCCCCh
Q 007577 479 GWCQIGASGAEFVADMLRYNNTISILDLRANGLRDEGAKCLAQSFKVVNEALTSIDLAFNEIRD 542 (597)
Q Consensus 479 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i~~~~~~~l~~~l~~~n~~L~~L~Ls~n~i~~ 542 (597)
++|+++.... ..++|+.|++++|+|++.. + ..++|++|++++|+++.
T Consensus 292 s~N~l~~lp~--------~~~~L~~L~L~~N~L~~l~-----~----~~~~L~~L~L~~N~L~~ 338 (353)
T d1jl5a_ 292 SNNKLIELPA--------LPPRLERLIASFNHLAEVP-----E----LPQNLKQLHVEYNPLRE 338 (353)
T ss_dssp CSSCCSCCCC--------CCTTCCEEECCSSCCSCCC-----C----CCTTCCEEECCSSCCSS
T ss_pred CCCccCcccc--------ccCCCCEEECCCCcCCccc-----c----ccCCCCEEECcCCcCCC
Confidence 8887765321 2467888888888777531 1 12568888888888764
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.7e-12 Score=110.13 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=7.2
Q ss_pred hCCCcCEEecCCCCC
Q 007577 469 FHGNINTLKLGWCQI 483 (597)
Q Consensus 469 ~~~~L~~L~L~~n~i 483 (597)
.+++|++|++++|.+
T Consensus 110 ~l~~L~~L~l~~N~i 124 (162)
T d1a9na_ 110 SLKSLTYLCILRNPV 124 (162)
T ss_dssp GCTTCCEEECCSSGG
T ss_pred cccccchhhcCCCcc
Confidence 344455555555444
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=7.7e-12 Score=109.29 Aligned_cols=84 Identities=20% Similarity=0.169 Sum_probs=39.3
Q ss_pred ccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHH
Q 007577 358 KGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIAR 437 (597)
Q Consensus 358 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 437 (597)
+++|+.|++++|.++.. .+..+..+++|++|++++|.+++.. .+ ..+..+++|++|++++|.++..... -..
T Consensus 62 l~~L~~L~ls~N~i~~l----~~~~~~~l~~L~~L~L~~N~i~~~~--~l-~~l~~l~~L~~L~l~~N~i~~~~~~-r~~ 133 (162)
T d1a9na_ 62 LRRLKTLLVNNNRICRI----GEGLDQALPDLTELILTNNSLVELG--DL-DPLASLKSLTYLCILRNPVTNKKHY-RLY 133 (162)
T ss_dssp CSSCCEEECCSSCCCEE----CSCHHHHCTTCCEEECCSCCCCCGG--GG-GGGGGCTTCCEEECCSSGGGGSTTH-HHH
T ss_pred CcchhhhhcccccccCC----Cccccccccccccceeccccccccc--cc-cccccccccchhhcCCCccccccch-HHH
Confidence 34555555555555541 1112344556666666666555421 01 2244456666666666655432210 011
Q ss_pred HhhcCCCcCEEE
Q 007577 438 VLKDNSVITSLD 449 (597)
Q Consensus 438 ~l~~~~~L~~L~ 449 (597)
.+..+|+|+.||
T Consensus 134 ~i~~lp~L~~LD 145 (162)
T d1a9na_ 134 VIYKVPQVRVLD 145 (162)
T ss_dssp HHHHCTTCSEET
T ss_pred HHHHCCCcCeeC
Confidence 233456666665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.9e-11 Score=101.48 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=46.4
Q ss_pred eeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcC
Q 007577 363 VLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDN 442 (597)
Q Consensus 363 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 442 (597)
.|++++|+++. ++ .+..+++|++|++++|.|++ ++..+..+++|++|++++|.|++. . .+..+
T Consensus 2 ~L~Ls~n~l~~-----l~-~l~~l~~L~~L~ls~N~l~~-----lp~~~~~l~~L~~L~l~~N~i~~l-----~-~~~~l 64 (124)
T d1dcea3 2 VLHLAHKDLTV-----LC-HLEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-----D-GVANL 64 (124)
T ss_dssp EEECTTSCCSS-----CC-CGGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-----G-GGTTC
T ss_pred EEEcCCCCCCC-----Cc-ccccCCCCCEEECCCCccCc-----chhhhhhhhccccccccccccccc-----C-ccccc
Confidence 44555555544 21 23445555555555555543 223344455555555555555442 1 13444
Q ss_pred CCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCC
Q 007577 443 SVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIG 484 (597)
Q Consensus 443 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 484 (597)
++|++|++++|+|++... + ..+..+++|++|++++|.++
T Consensus 65 ~~L~~L~l~~N~i~~~~~--~-~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 65 PRLQELLLCNNRLQQSAA--I-QPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCEEECCSSCCCSSST--T-GGGGGCTTCCEEECTTSGGG
T ss_pred cccCeEECCCCccCCCCC--c-hhhcCCCCCCEEECCCCcCC
Confidence 555555555555443210 0 12233445555555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.4e-11 Score=102.19 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=6.5
Q ss_pred cCCCCCEEEccCCCC
Q 007577 328 GNKSLRELHLHGNSI 342 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i 342 (597)
.+++|+.|++++|.+
T Consensus 88 ~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 88 SCPRLVLLNLQGNSL 102 (124)
T ss_dssp GCTTCCEEECTTSGG
T ss_pred CCCCCCEEECCCCcC
Confidence 344444444444433
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.99 E-value=1e-11 Score=112.44 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHH
Q 007577 381 EYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGA 460 (597)
Q Consensus 381 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 460 (597)
..+..+++|++|+|++|.|++. ..+..+++|++|+|++|.|++.. .+ ...+++|++|++++|.++..
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~~i------~~l~~l~~L~~L~Ls~N~i~~i~--~~---~~~~~~L~~L~l~~N~i~~l-- 108 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIEKI------SSLSGMENLRILSLGRNLIKKIE--NL---DAVADTLEELWISYNQIASL-- 108 (198)
T ss_dssp HHHHHTTTCCEEECSEEEESCC------CCHHHHTTCCEEECCEEEECSCS--SH---HHHHHHCCEEECSEEECCCH--
T ss_pred hHHhcccccceeECcccCCCCc------ccccCCccccChhhccccccccc--cc---cccccccccccccccccccc--
Confidence 4455556666666666655441 11333455666666665554321 01 11113455555555555432
Q ss_pred HHHHHHHhhCCCcCEEecCCCCCChhHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 461 KALSEVLKFHGNINTLKLGWCQIGASGAEFVADMLRYNNTISILDLRANGL 511 (597)
Q Consensus 461 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~i 511 (597)
..+ ..+++|++|++++|+|++... ...+..+++|+.|++++|.+
T Consensus 109 ~~~----~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 109 SGI----EKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHH----HHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSSHH
T ss_pred ccc----cccccccccccccchhccccc---cccccCCCccceeecCCCcc
Confidence 111 222455555555555544321 11233445555555555543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.96 E-value=1.4e-11 Score=111.58 Aligned_cols=109 Identities=26% Similarity=0.247 Sum_probs=49.5
Q ss_pred HhhCCCccEEEcCCCCCChHHHHHHHHHhhcCCCCCEEEccCCCCChHHHHHHHHhhhcCccccceeeccCCCCChhHHH
Q 007577 298 LLENSTIRSLHLNGNYGGALGANALAKGLEGNKSLRELHLHGNSIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAF 377 (597)
Q Consensus 298 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 377 (597)
+..+++|++|+|++|.|+... .+..+++|+.|++++|.+++.. .+.. ..++|+.|++++|.++.
T Consensus 44 l~~L~~L~~L~Ls~n~I~~i~------~l~~l~~L~~L~Ls~N~i~~i~--~~~~----~~~~L~~L~l~~N~i~~---- 107 (198)
T d1m9la_ 44 LSTLKACKHLALSTNNIEKIS------SLSGMENLRILSLGRNLIKKIE--NLDA----VADTLEELWISYNQIAS---- 107 (198)
T ss_dssp HHHTTTCCEEECSEEEESCCC------CHHHHTTCCEEECCEEEECSCS--SHHH----HHHHCCEEECSEEECCC----
T ss_pred HhcccccceeECcccCCCCcc------cccCCccccChhhccccccccc--cccc----ccccccccccccccccc----
Confidence 334455555555555444321 1334455555555555544310 0111 11245555555555554
Q ss_pred HHHHHHHcCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCC
Q 007577 378 HVAEYIKNCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNI 427 (597)
Q Consensus 378 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 427 (597)
+ ..+..+++|++|++++|.|++... ...+..+++|++|+|++|.+
T Consensus 108 -l-~~~~~l~~L~~L~L~~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 108 -L-SGIEKLVNLRVLYMSNNKITNWGE---IDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -H-HHHHHHHHSSEEEESEEECCCHHH---HHHHTTTTTCSEEEECSSHH
T ss_pred -c-ccccccccccccccccchhccccc---cccccCCCccceeecCCCcc
Confidence 2 123444555555555555554210 12344455555555555543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.95 E-value=4.6e-13 Score=121.26 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=38.2
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHHHHHHHHHHHhhCCCcCEEecCCCCCChhHHHHHH
Q 007577 413 QNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGADGAKALSEVLKFHGNINTLKLGWCQIGASGAEFVA 492 (597)
Q Consensus 413 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 492 (597)
.+++|++|+|++|.+.... ...+...++|++|+|++|+|..... ..+..+++|++|+|++|+|+......
T Consensus 52 ~l~~L~~L~L~~N~i~~~~----~~~~~~~~~L~~L~Ls~N~l~~l~~----~~F~~l~~L~~L~L~~N~l~~i~~~~-- 121 (192)
T d1w8aa_ 52 RLPHLVKLELKRNQLTGIE----PNAFEGASHIQELQLGENKIKEISN----KMFLGLHQLKTLNLYDNQISCVMPGS-- 121 (192)
T ss_dssp GCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSCCCCEECS----SSSTTCTTCCEEECCSSCCCEECTTS--
T ss_pred CCceEeeeecccccccccc----ccccccccccceeeeccccccccCH----HHHhCCCcccccccCCccccccCHHH--
Confidence 3444455555444443321 1122233445555555554443211 12233345555555555554433222
Q ss_pred HHHhcCCCccEEEccCCCCC
Q 007577 493 DMLRYNNTISILDLRANGLR 512 (597)
Q Consensus 493 ~~l~~~~~L~~L~l~~n~i~ 512 (597)
+...++|++|++++|.+.
T Consensus 122 --f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 122 --FEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp --STTCTTCCEEECTTCCBC
T ss_pred --hcCCcccccccccccccc
Confidence 223355666666665443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=8.4e-12 Score=112.74 Aligned_cols=13 Identities=54% Similarity=0.782 Sum_probs=5.8
Q ss_pred CCcCEEECcCCCC
Q 007577 443 SVITSLDLAYNPI 455 (597)
Q Consensus 443 ~~L~~L~Ls~n~i 455 (597)
++|++|+|++|.+
T Consensus 126 ~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 126 NSLTSLNLASNPF 138 (192)
T ss_dssp TTCCEEECTTCCB
T ss_pred ccccccccccccc
Confidence 4444444444433
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=4e-11 Score=112.46 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCccEEEeccCCCCHHHHHHHHHHhhhCCCccEEEccCCCCChhHHHHHHHHHhcCCCcCEEEecC-CCCChHHHHHHHH
Q 007577 190 QTAEEVSFAANGITAAGIKAFDGVLQSNIALKTLNLSGNPIGDEGVKCLCDILVDNAGVERLQLSS-VDLRDEGAKAIAE 268 (597)
Q Consensus 190 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-~~l~~~~~~~l~~ 268 (597)
+++++|++++|.|+.... ..+.++++|++|++++|.+...- -...+..++.++++.+.. +.+.... ..
T Consensus 29 ~~l~~L~Ls~n~i~~l~~----~~f~~l~~L~~L~ls~n~~~~~i---~~~~f~~l~~l~~l~~~~~n~l~~~~----~~ 97 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQK----GAFSGFGDLEKIEISQNDVLEVI---EADVFSNLPKLHEIRIEKANNLLYIN----PE 97 (242)
T ss_dssp SCCSEEEEESCCCCEECT----TTTTTCTTCCEEEEESCTTCCEE---CSSSEESCTTCCEEEEECCTTCCEEC----TT
T ss_pred CCCCEEECcCCcCCccCh----hHhhccchhhhhhhcccccccee---eccccccccccccccccccccccccc----cc
Confidence 356677777766653211 22345566777777776554310 001222356666666553 3444321 12
Q ss_pred HHHcCCCccEEEeccCCCC
Q 007577 269 LLKNNSILRVLELNNNMID 287 (597)
Q Consensus 269 ~l~~~~~L~~L~Ls~n~i~ 287 (597)
.+..+++|++|++++|.++
T Consensus 98 ~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 98 AFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp SEECCTTCCEEEEESCCCC
T ss_pred cccccccccccccchhhhc
Confidence 2344566777777766664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.8e-12 Score=118.99 Aligned_cols=36 Identities=8% Similarity=-0.043 Sum_probs=17.7
Q ss_pred CccEEEeccCCCChhhHHHHHHHHhhCCCccEEEcCCCCC
Q 007577 275 ILRVLELNNNMIDYSGFTSLAEALLENSTIRSLHLNGNYG 314 (597)
Q Consensus 275 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i 314 (597)
++++|++++|+|+.-. ..+|.++++|++|++++|.+
T Consensus 30 ~l~~L~Ls~n~i~~l~----~~~f~~l~~L~~L~ls~n~~ 65 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQ----KGAFSGFGDLEKIEISQNDV 65 (242)
T ss_dssp CCSEEEEESCCCCEEC----TTTTTTCTTCCEEEEESCTT
T ss_pred CCCEEECcCCcCCccC----hhHhhccchhhhhhhccccc
Confidence 4666666666654211 11233455555555555544
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=1.8e-07 Score=80.87 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=14.6
Q ss_pred CcCEEecCCCCCChh---HHHHHHHHHhcCCCccEEE
Q 007577 472 NINTLKLGWCQIGAS---GAEFVADMLRYNNTISILD 505 (597)
Q Consensus 472 ~L~~L~L~~n~i~~~---~~~~l~~~l~~~~~L~~L~ 505 (597)
+|++|++++|.+... ...+....+..+|+|+.||
T Consensus 116 ~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 116 KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp CCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred ccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence 344444444444321 1223333444455555554
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=3.4e-07 Score=79.05 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=34.8
Q ss_pred cCCCCcEEEccCCCCCcHHHHHHHHHHhcCCCccEEEccCCCCChHHHHHHHHHhhcCCCcCEEECcCCCCCHH---HHH
Q 007577 385 NCKSLLWINLYMNDIGDEGAEKIADALKQNRTITTIDLGGNNIHSKGASAIARVLKDNSVITSLDLAYNPIGAD---GAK 461 (597)
Q Consensus 385 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---~~~ 461 (597)
.+++|++|+|++|+|++. ..+...+..+++|+.|+|++|.|++...... +. ...|++|++++|++... ...
T Consensus 63 ~~~~L~~L~Ls~N~i~~l--~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~---l~-~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSERELDK---IK-GLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HCTTCCCCCCCSSCCCCC--SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH---HT-TCCCSSCCCTTSTTSSSSSSHHH
T ss_pred hCCCCCEeeCCCccccCC--chhHHHHhhCCcccccccccCccccchhhhh---hh-ccccceeecCCCCcCcCcccchh
Confidence 344445555554444431 0011222334455555555555444222111 11 13455555555544321 122
Q ss_pred HHHHHHhhCCCcCEEe
Q 007577 462 ALSEVLKFHGNINTLK 477 (597)
Q Consensus 462 ~l~~~l~~~~~L~~L~ 477 (597)
.....+..+++|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 2333344455555553
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.4e-07 Score=81.03 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=6.1
Q ss_pred cCCCCCEEEccCCCC
Q 007577 328 GNKSLRELHLHGNSI 342 (597)
Q Consensus 328 ~~~~L~~L~Ls~n~i 342 (597)
++++|+.|++++|+|
T Consensus 54 ~l~~L~~L~Ls~N~l 68 (156)
T d2ifga3 54 GLGELRNLTIVKSGL 68 (156)
T ss_dssp SCCCCSEEECCSSCC
T ss_pred cccccCcceeecccc
Confidence 334444444444433
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.1e-07 Score=78.75 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=29.5
Q ss_pred hhcCCCCCEEEccCC-CCChHHHHHHHHhhhcCccccceeeccCCCCChhHHHHHHHHHHcCCCCcEEEccCCCCC
Q 007577 326 LEGNKSLRELHLHGN-SIGDEGIRALMSGLSSRKGKLAVLDIGNNSISAKGAFHVAEYIKNCKSLLWINLYMNDIG 400 (597)
Q Consensus 326 l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 400 (597)
+..+++|++|+++++ .++.... ..+..+++|+.|++++|+|+.. -+..|..+++|++|+|++|.|+
T Consensus 27 l~~l~~l~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~Ls~N~l~~i----~~~~f~~l~~L~~L~Ls~N~l~ 93 (156)
T d2ifga3 27 LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKSGLRFV----APDAFHFTPRLSRLNLSFNALE 93 (156)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSSCCCEE----CTTGGGSCSCCCEEECCSSCCS
T ss_pred ccCccccCeeecCCCccccccCc-----hhhccccccCcceeeccccCCc----ccccccccccccceeccCCCCc
Confidence 344555666666444 2443211 1112334555555555555441 1233444555555555555444
|