Citrus Sinensis ID: 007585

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------

MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

cHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccEEEEEccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccc

cHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHcHEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccc

makrifplcesfvltgqfVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQslgpilssssqaepYLTHLAQLVLGVGFDK

MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPsdgfsgsekfkrlkLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

****IFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSID************************LSQVQKVMIRDATVTESILKFEREFNNE***************PYLTHLAQLVLGVG***

MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLL****TQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGV*************PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI*********************************IRDATVTESILKFEREFNNELQSLGPILS**********HLAQLVLGVGFDK

MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE*****DSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGS******KLRSL*QVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF**

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MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFDK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		597	2.2.26 [Sep-21-2011]
Q921G8		905	Gamma-tubulin complex com	yes	no	0.842	0.555	0.408	1e-114
Q9BSJ2		902	Gamma-tubulin complex com	yes	no	0.842	0.557	0.404	1e-113
Q5R5J6		902	Gamma-tubulin complex com	yes	no	0.842	0.557	0.402	1e-113
Q9XYP7		852	Gamma-tubulin complex com	yes	no	0.874	0.612	0.328	5e-88
Q9Y705		784	Spindle pole body compone	yes	no	0.872	0.664	0.320	5e-68
Q95ZG3		1335	Spindle pole body compone	yes	no	0.527	0.235	0.320	6e-55
Q96CW5		907	Gamma-tubulin complex com	no	no	0.696	0.458	0.274	3e-43
O73787		906	Gamma-tubulin complex com	N/A	no	0.693	0.456	0.275	5e-43
P58854		905	Gamma-tubulin complex com	no	no	0.696	0.459	0.274	4e-42
Q9XYP8		917	Gamma-tubulin complex com	no	no	0.567	0.369	0.263	6e-30

>sp\|Q921G8\|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2	Back alignment and function desciption

 Score =  414 bits (1064), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/517 (40%), Positives = 324/517 (62%), Gaps = 14/517 (2%)

Query: 1   MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGR 60
           +  RI P+  S+    +F+E +S F+ G VNHA AA++R L+ +Y  +V QLE   R G 
Sbjct: 259 LVNRILPVAASYSTVTRFIEEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGL 318

Query: 61  LSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
           LS+Q LWFY QP + ++  ++++          G + L+LL  ++    GD+  + L   
Sbjct: 319 LSLQKLWFYIQPAMRTIDILASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQELCLY 378

Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS-LKD 179
           +T+ AS  Y  ILE+W+Y G+I DPY EF + E+  L KE + +DY+ KYW QRY+ L  
Sbjct: 379 LTKAASAPYFEILEKWIYRGIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYTVLPQ 437

Query: 180 GIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFA 239
            IPSFL  +AGKIL+TGKYLNV+RECGH    P ++  +++       Y+E ++ A+ +A
Sbjct: 438 QIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKAFNYA 495

Query: 240 SGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLL 299
           S  LL+ + E  +L+  LRSIKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL
Sbjct: 496 SKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALL 555

Query: 300 DIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQPVSIT 354
           ++ALR + A  DP  +DL   +    L+ ++  +  +E K     T +D  +L    +++
Sbjct: 556 ELALRMSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLS 611

Query: 355 GLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN-A 413
           GLE FS  Y V+WPLS++I+RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     
Sbjct: 612 GLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALH 671

Query: 414 SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 473
           S    + +  L + ML F+ ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD
Sbjct: 672 SAKWFAGAFTLRQRMLNFVQNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTSFLD 731

Query: 474 KCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISS 510
            CL++C+L  P+LLK   +L S+C+ +    Q    S
Sbjct: 732 NCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQS 768

Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)

>sp\|Q9BSJ2\|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2	Back alignment and function description

>sp\|Q5R5J6\|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1	Back alignment and function description

>sp\|Q9XYP7\|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2	Back alignment and function description

>sp\|Q9Y705\|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1	Back alignment and function description

>sp\|Q95ZG3\|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2	Back alignment and function description

>sp\|Q96CW5\|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2	Back alignment and function description

>sp\|O73787\|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1	Back alignment and function description

>sp\|P58854\|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2	Back alignment and function description

>sp\|Q9XYP8\|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
296087642		702	unnamed protein product [Vitis vinifera]	0.994	0.846	0.835	0.0
224112407		711	tubulin gamma complex-associated protein	0.979	0.822	0.798	0.0
449461078		707	PREDICTED: spindle pole body component 9	0.991	0.837	0.797	0.0
359488832		681	PREDICTED: gamma-tubulin complex compone	0.959	0.841	0.819	0.0
356560679		664	PREDICTED: gamma-tubulin complex compone	0.991	0.891	0.787	0.0
356503087		827	PREDICTED: gamma-tubulin complex compone	0.984	0.711	0.788	0.0
255578011		713	gamma-tubulin complex component, putativ	0.993	0.831	0.758	0.0
357513163		672	Gamma-tubulin complex component [Medicag	0.981	0.872	0.781	0.0
30686344		679	Spc97 / Spc98 family of spindle pole bod	0.948	0.833	0.758	0.0
18418288		678	Spc97 / Spc98 family of spindle pole bod	0.948	0.834	0.758	0.0

>gi\|296087642\|emb\|CBI34898.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/594 (83%), Positives = 543/594 (91%)

Query: 1   MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGR 60
           +AKRIFPLCESF+L  QFVESRSQFK GLVNHAFAA+LRA LLDY+AMVAQLEHQFRLGR
Sbjct: 106 LAKRIFPLCESFLLINQFVESRSQFKTGLVNHAFAAALRAFLLDYQAMVAQLEHQFRLGR 165

Query: 61  LSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
           LSIQGLWFYCQPM+GSM A+S VIHKASANNF GSAVLNLLQSQAKAMAGDN VRSLLEK
Sbjct: 166 LSIQGLWFYCQPMMGSMLALSTVIHKASANNFMGSAVLNLLQSQAKAMAGDNAVRSLLEK 225

Query: 121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDG 180
           MTQCAS+AYLGILERWVYEGVIDDPYGEFFIAE+KSL KESLTQDYDAKYW QRYSLKDG
Sbjct: 226 MTQCASSAYLGILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWGQRYSLKDG 285

Query: 181 IPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFAS 240
           IPSFLAN AG ILTTGKYLNVMRECGH+ QVP SE+SK +SFGSNHHYLEC+K AYEF+S
Sbjct: 286 IPSFLANAAGTILTTGKYLNVMRECGHNVQVPASEDSKFISFGSNHHYLECIKAAYEFSS 345

Query: 241 GELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLD 300
            ELLNLIKE+YDL+GKLRSIK YLLLDQGDFLVHFMDIAR+EL K+LD+I+VEKLQSLLD
Sbjct: 346 TELLNLIKEKYDLLGKLRSIKHYLLLDQGDFLVHFMDIARDELAKRLDDISVEKLQSLLD 405

Query: 301 IALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFS 360
           +ALR+TAAAADPCHEDLTC VERSSLLKR+ TLK +EI++ +DS DL++PVSI+GLETFS
Sbjct: 406 LALRTTAAAADPCHEDLTCCVERSSLLKRLGTLKALEIRSLADSNDLKEPVSISGLETFS 465

Query: 361 LSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISR 420
           LSYKVQWPLSIVISRKALTKYQ++FR LFHCKHV RQLCGAWQ+HQG RA N  GTAI R
Sbjct: 466 LSYKVQWPLSIVISRKALTKYQLIFRFLFHCKHVNRQLCGAWQLHQGVRAINMRGTAIPR 525

Query: 421 SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 480
           SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQ HDFFLDKCLRECL
Sbjct: 526 SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQFHDFFLDKCLRECL 585

Query: 481 LHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQ 540
           L LP+LLKKVERLKSLCLQYA+ATQ LISSS+D+PK E PS G  G EK K+ K R  S+
Sbjct: 586 LLLPELLKKVERLKSLCLQYASATQRLISSSVDIPKSEVPSKGSLGLEKSKQGKSRIPSR 645

Query: 541 VQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVG 594
           V K+ I ++TVT+SILKFE+EFN EL SLGPILS+S+QAEP+LTHLAQ +LGVG
Sbjct: 646 VLKLAITNSTVTDSILKFEKEFNAELHSLGPILSNSAQAEPHLTHLAQWILGVG 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224112407\|ref\|XP_002316177.1\| tubulin gamma complex-associated protein [Populus trichocarpa] gi\|222865217\|gb\|EEF02348.1\| tubulin gamma complex-associated protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449461078\|ref\|XP_004148270.1\| PREDICTED: spindle pole body component 97-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359488832\|ref\|XP_002273947.2\| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356560679\|ref\|XP_003548617.1\| PREDICTED: gamma-tubulin complex component 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356503087\|ref\|XP_003520343.1\| PREDICTED: gamma-tubulin complex component 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|255578011\|ref\|XP_002529877.1\| gamma-tubulin complex component, putative [Ricinus communis] gi\|223530653\|gb\|EEF32527.1\| gamma-tubulin complex component, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|357513163\|ref\|XP_003626870.1\| Gamma-tubulin complex component [Medicago truncatula] gi\|355520892\|gb\|AET01346.1\| Gamma-tubulin complex component [Medicago truncatula]	Back alignment and taxonomy information

>gi\|30686344\|ref\|NP_850838.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi\|332005039\|gb\|AED92422.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|18418288\|ref\|NP_568346.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi\|13430652\|gb\|AAK25948.1\|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi\|14532826\|gb\|AAK64095.1\| putative spindle pole body protein [Arabidopsis thaliana] gi\|332005040\|gb\|AED92423.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		597
TAIR\|locus:2178930		679	AT5G17410 [Arabidopsis thalian	0.860	0.756	0.790	6.6e-243
UNIPROTKB\|J9P5U2		704	TUBGCP2 "Uncharacterized prote	0.966	0.819	0.383	2.6e-111
UNIPROTKB\|F1SCV1		906	TUBGCP2 "Uncharacterized prote	0.966	0.636	0.384	2.6e-111
UNIPROTKB\|Q5ZKY5		895	TUBGCP2 "Uncharacterized prote	0.946	0.631	0.384	1.8e-110
ZFIN\|ZDB-GENE-031118-150		882	tubgcp2 "tubulin, gamma comple	0.944	0.639	0.391	2.3e-110
RGD\|1309597		905	Tubgcp2 "tubulin, gamma comple	0.840	0.554	0.411	3.8e-110
UNIPROTKB\|Q9BSJ2		902	TUBGCP2 "Gamma-tubulin complex	0.959	0.635	0.387	6.1e-110
MGI\|MGI:1921487		905	Tubgcp2 "tubulin, gamma comple	0.840	0.554	0.407	6.1e-110
UNIPROTKB\|A5D7P5		905	TUBGCP2 "Uncharacterized prote	0.966	0.637	0.383	1e-109
UNIPROTKB\|E1BZL5		906	TUBGCP2 "Uncharacterized prote	0.948	0.624	0.382	1.6e-109

TAIR\|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2146 (760.5 bits), Expect = 6.6e-243, Sum P(2) = 6.6e-243
 Identities = 411/520 (79%), Positives = 463/520 (89%)

Query:     1 MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGR 60
             +AKRIFPLCE ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFRLGR
Sbjct:   111 LAKRIFPLCEYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGR 170

Query:    61 LSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEK 120
             LSIQGLWFYCQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSLLEK
Sbjct:   171 LSIQGLWFYCQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSLLEK 230

Query:   121 MTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDG 180
             MT+CASNAYL ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  AKYW QRYSLKD 
Sbjct:   231 MTECASNAYLSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSLKDT 290

Query:   181 IPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFAS 240
             IP FLANIA  ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+EFAS
Sbjct:   291 IPGFLANIAATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHEFAS 350

Query:   241 GELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLD 300
              EL+NLIK++YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQSLLD
Sbjct:   351 IELVNLIKDKYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQSLLD 410

Query:   301 IALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFS 360
             +ALR+TAAAADP HEDLTC V+R+SLL    T  G+   T S+S+  E P+SITGLETFS
Sbjct:   411 LALRTTAAAADPRHEDLTCCVDRASLL----TTLGMHKDTDSNSI--EDPMSITGLETFS 464

Query:   361 LSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISR 420
             LSYKVQWPLSIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG R+ N+ GTAI R
Sbjct:   465 LSYKVQWPLSIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQGIRSMNSKGTAILR 524

Query:   421 SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECL 480
             SSLLCRSMLKFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQHHDFFLDKCLR CL
Sbjct:   525 SSLLCRSMLKFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQHHDFFLDKCLRGCL 584

Query:   481 LHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEP 520
             L LPD+LKK+E+LKS+CLQYAAATQWLISSSID+     P
Sbjct:   585 LLLPDVLKKMEKLKSVCLQYAAATQWLISSSIDINSQSHP 624

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005815 "microtubule organizing center" evidence=IEA

UNIPROTKB\|J9P5U2 TUBGCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		597
pfam04130		528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-127

>gnl\|CDD\|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family	Back alignment and domain information

 Score =  382 bits (983), Expect = e-127
 Identities = 168/500 (33%), Positives = 254/500 (50%), Gaps = 31/500 (6%)

Query: 1   MAKRIFPLCESFVLTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR- 57
           +  RI  L   +    +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +   
Sbjct: 40  LLNRILELGTLYRRLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLS 99

Query: 58  LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSL 117
            G L++  L    QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R L
Sbjct: 100 NGTLTLLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLREL 159

Query: 118 LEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL 177
           L ++   AS  YL +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L
Sbjct: 160 LLRLLNAASQPYLQMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTL 216

Query: 178 -KDGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFG 223
            +D +PSFL   +A KIL  GK LN +REC  S  +                  KL S  
Sbjct: 217 REDMLPSFLPKELARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSL 276

Query: 224 SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREEL 283
                   +  AY  AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL
Sbjct: 277 DTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDEL 336

Query: 284 MKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSD 343
            K  + ++   LQSLL  ALRS+++  DP   DL     + S          V     S 
Sbjct: 337 DKPANSLSDHALQSLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS 396

Query: 344 SVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQ 403
                    ++GL+  +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+
Sbjct: 397 --------GLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWK 448

Query: 404 VHQGARAFN---ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS 460
                R       +   + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK 
Sbjct: 449 ELNKRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKD 508

Query: 461 IDEVIQHHDFFLDKCLRECL 480
           +DE+I  H+ +LD  L  C 
Sbjct: 509 LDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		597
KOG2001		734	consensus Gamma-tubulin complex, DGRIP84/SPC97 com	100.0
KOG2065		679	consensus Gamma-tubulin ring complex protein [Cyto	100.0
PF04130		542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	100.0
KOG2000		879	consensus Gamma-tubulin complex, DGRIP91/SPC98 com	100.0
KOG4344		1121	consensus Uncharacterized conserved protein [Funct	99.97

>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=5.8e-95  Score=742.19  Aligned_cols=562  Identities=45%  Similarity=0.746  Sum_probs=490.0

Q ss_pred             ChhhHhhHHhHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHhhhhHHHHHHH
Q 007585            1 MAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAV   80 (597)
Q Consensus         1 ~~~~il~~g~~~~~L~~fi~~~~~~~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L   80 (597)
                      ++++++|+|.+|..+++||+..+.+.+|.|.+|+|+|+++++.+|+..|.++|++.+.+.+|+++||++++|++..|+.+
T Consensus       146 la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l  225 (734)
T KOG2001|consen  146 LAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYDYYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRL  225 (734)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHH
Confidence            47899999999999999999998889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecCCCCCceeeeCCccccc
Q 007585           81 SAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKE  160 (597)
Q Consensus        81 ~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D~~~EFfI~~~~~~~~~  160 (597)
                      +..++.+..+.++||.+|+.+++++..+.||+..+.++.+++++++.||++|+.+|+..|.++|||+||||.++ ..+++
T Consensus       226 ~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~  304 (734)
T KOG2001|consen  226 AVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKE  304 (734)
T ss_pred             HHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccccCchHhHhhhhc-chhhh
Confidence            98888888789999999999999998899999999999999999999999999999999999999999999999 66777


Q ss_pred             ccccccchhhhcccccc-ccCCCcchHHhHHHHHhhhhHHHHHHHhcCCCCCCcccccccc-cCCCcccHHHHHHHHHHH
Q 007585          161 SLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-SFGSNHHYLECVKVAYEF  238 (597)
Q Consensus       161 ~~~~~~~~~~W~~~y~l-~~~lP~Fl~~~a~~Il~~GK~l~~lr~~~~~~~~p~~e~~~~~-~f~~~~~~~~~I~~~~~~  238 (597)
                      .++.|+.++||+++|+| +|.+|+|+...|+|||.||||+|++|+||+.++.|.+.+.... ....+..+.+.|+++|..
T Consensus       305 ~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvReC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~  384 (734)
T KOG2001|consen  305 DLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVRECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEF  384 (734)
T ss_pred             cCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHHHhCccCCCCcchhhhccccccchhhHHHHHHHHHHH
Confidence            78889999999999999 8999999999999999999999999999999887755432111 111237789999999999


Q ss_pred             HHHHHHHHHHhhccHHHHHHHHhHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-hhhcCCCCCCCcc
Q 007585          239 ASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDL  317 (597)
Q Consensus       239 ~s~~l~~ll~~~~~L~~hL~~l~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l  317 (597)
                      ||..++++++++++|..||+++|+||||.+|||+.+|++.+.++|.++.+.+++.+|+++|+.|++ .+.+.+||+++++
T Consensus       385 A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L  464 (734)
T KOG2001|consen  385 ANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDL  464 (734)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhhe
Confidence            999999999999999999999999999999999999999999999999999999999999999999 7777899999999


Q ss_pred             ceeeccccHHHHHhhhhccccccCCCCCCCCCC---CCCcceeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHH
Q 007585          318 TCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHV  394 (597)
Q Consensus       318 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFrfLl~lk~~  394 (597)
                      +|.+.+.+++.+++.+-+++..+-+ +....+|   .++.|++.+.++|+|||||++||++++|.|||.|||+++.||++
T Consensus       465 ~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhV  543 (734)
T KOG2001|consen  465 KICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHV  543 (734)
T ss_pred             eeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999877544421111 1112233   57899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCch-hhHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHH
Q 007585          395 ERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD  473 (597)
Q Consensus       395 ~~~L~~~w~~~~~~~~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~  473 (597)
                      +++|+++|..++..|+.+..+ ++.+.++.+|++|++||+++.+|++.+||||+|..|+..+++++++|+++..|+.|||
T Consensus       544 erqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld  623 (734)
T KOG2001|consen  544 ERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLD  623 (734)
T ss_pred             HHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            999999999998877666544 4567788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHH
Q 007585          474 KCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVT  552 (597)
Q Consensus       474 ~i~~~c~L~~~-~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (597)
                      .|++.|||+.+ .+.+.+.++..+|+.||..++.+.+.. ..  ++..+..+ .|.+ ..  .+.+.+.+    -.+.+.
T Consensus       624 ~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~-~~--~~~~~~~~-~~~~-d~--~~k~~~t~----li~~le  692 (734)
T KOG2001|consen  624 TCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD-PT--DEEKNSVG-HPQF-DE--GRKEDDTL----LISKLE  692 (734)
T ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc-ch--hhhhcccc-ccch-hh--hhhhhhHH----HHHHHH
Confidence            99999999976 889999999999999999999887421 00  11111111 0111 00  01011111    022334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Q 007585          553 ESILKFEREFNNELQSLGPILSS  575 (597)
Q Consensus       553 ~~i~~~~~~F~~~~~~l~~~l~~  575 (597)
                      +-+.+.+..|++|++.|+..|++
T Consensus       693 ei~~~~~~~f~~~l~~L~~rlsk  715 (734)
T KOG2001|consen  693 EIISNADKNFRDCLKNLLQRLSK  715 (734)
T ss_pred             HHHHHhHHHHHHHHHHHHHHccc
Confidence            55677999999999999999994

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]	Back alignment and domain information

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin	Back alignment and domain information

>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]	Back alignment and domain information

>KOG4344 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		597
3rip_A		677	Crystal Structure Of Human Gamma-Tubulin Complex Pr		3e-19

>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677

Back alignment and structure

Iteration: 1

Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 117/521 (22%), Positives = 209/521 (40%), Gaps = 63/521 (12%) Query: 27 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 84 +G+ AF L ++L Y + LE +F LG LSI + ++ +V V+ Sbjct: 82 HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140 Query: 85 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 144 + + G +L + + G VRS LEK+ L W+ G++ D Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198 Query: 145 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 176 + EFFI + S S + D K R+ ++S Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258 Query: 177 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 229 L+ + +PS++ +A KIL G+ + + + V + +L +F + H L Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314 Query: 230 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 277 + V + L L+ E DL+G+L+ IK + LL +G+ F+D Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374 Query: 278 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 337 A+ L +T + + D L ++E + AT Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432 Query: 338 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 397 S ++ E P S G LSYKVQWPL I+ + L KY +VF+ L + V+ + Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490 Query: 398 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 456 L W + + ++ T + L R+ + F +++L +YL +VLE + + +++ Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548 Query: 457 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 497 + + + + HD FL L + + L + + + LC Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589

PyMOL of 3rip

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		597
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	2e-94
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677	Back alignment and structure

 Score =  303 bits (775), Expect = 2e-94
 Identities = 116/603 (19%), Positives = 215/603 (35%), Gaps = 68/603 (11%)

Query: 1   MAKRIFPLCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDY 45
           +  R+  L   ++   +F+E  +                  +G+   AF   L ++L  Y
Sbjct: 41  VLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPY 100

Query: 46  EAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQ 104
              +  LE +F     LSI  + ++         +V  V+ +  +    G  +L  +   
Sbjct: 101 RQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKH 160

Query: 105 AKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQ 164
           +    G   VRS LEK+           L  W+  G++ D + EFFI +  S    S   
Sbjct: 161 S--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQP 218

Query: 165 DYDAK----------------------------YWRQRYSL-KDGIPSFL-ANIAGKILT 194
           + D +                               +++SL  + +PS++   +A KIL 
Sbjct: 219 EEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILF 278

Query: 195 TGKYLNVMRECGHSAQ-------------VPTSENSKLLSFGSNHHYLECVKVAYEFASG 241
            G+ + +      +                      K     S   + + V       + 
Sbjct: 279 VGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAE 338

Query: 242 ELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDI 301
            L  L+ E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      
Sbjct: 339 HLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQ 398

Query: 302 ALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSL 361
           +        D     L  ++E      + AT    + +         +    +G     L
Sbjct: 399 SAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGL 454

Query: 362 SYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRS 421
           SYKVQWPL I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +  
Sbjct: 455 SYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIK 513

Query: 422 SLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLL 481
             L   M   +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  +
Sbjct: 514 WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFI 573

Query: 482 HLPDLLKKVERLKSLCLQYAAATQWLIS--SSIDLPKLEEPSDGFSGSEKFKRLKLRSLS 539
            L  +   +  +  LC  + +     +         +L     GFS         L S+ 
Sbjct: 574 LLKPVFHCLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSSVR 633

Query: 540 QVQ 542
             Q
Sbjct: 634 NHQ 636

PyMOL of 3rip

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		597
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	100.0

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.2e-86  Score=745.15  Aligned_cols=551  Identities=22%  Similarity=0.364  Sum_probs=447.9

Q ss_pred             ChhhHhhHHhHHHHHHHHHhcccCC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCchH
Q 007585            1 MAKRIFPLCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQ   64 (597)
Q Consensus         1 ~~~~il~~g~~~~~L~~fi~~~~~~---------------~~g~~~~al~~~i~~~L~~y~~~i~~lE~~~~~-~~lsL~   64 (597)
                      ++++++++|.+|+.|++|++.+...               ..|+|.+|||++|+++|.+|+..|+++|+++.. +.+||.
T Consensus        41 ll~~l~~lg~~y~~l~~fv~~~~~~~~~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~  120 (677)
T 3rip_A           41 VLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSIS  120 (677)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCC-------------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence            4789999999999999999965321               169999999999999999999999999999854 679999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcceecC
Q 007585           65 GLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD  144 (597)
Q Consensus        65 ~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~Ll~~~~~p~~~~l~~Wi~~G~l~D  144 (597)
                      .++..++|+...|+.|++|+.++..+.++||+||+.||+.+  .+|||.+++++.+|+..|++||+++|..||.+|+|.|
T Consensus       121 ~l~~~l~~~~~~l~~L~~l~~~~~~~~~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~D  198 (677)
T 3rip_A          121 HVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD  198 (677)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCC
Confidence            99999999999999999999998766799999999999987  5999999999999999999999999999999999999


Q ss_pred             CCCCceeeeCCccccccc--------------cc--------------ccchhhhcccccc-ccCCCcchHH-hHHHHHh
Q 007585          145 PYGEFFIAEDKSLLKESL--------------TQ--------------DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILT  194 (597)
Q Consensus       145 ~~~EFfI~~~~~~~~~~~--------------~~--------------~~~~~~W~~~y~l-~~~lP~Fl~~-~a~~Il~  194 (597)
                      ||+||||++++..++...              .+              +....+|..+|+| .+++|+|+++ +|+|||.
T Consensus       199 p~~EFFI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~  278 (677)
T 3rip_A          199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILF  278 (677)
T ss_dssp             TTSCSSEEEC--------------------------------------------CCCCEEECGGGSCTTSCHHHHHHHHH
T ss_pred             CcchheeEeccccccccccccccccccccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHH
Confidence            999999998864321100              00              0012479999999 7899999987 9999999


Q ss_pred             hhhHHHHHHHhcCCCC-----CCccccc------ccc---cCCCcccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 007585          195 TGKYLNVMRECGHSAQ-----VPTSENS------KLL---SFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSI  260 (597)
Q Consensus       195 ~GK~l~~lr~~~~~~~-----~p~~e~~------~~~---~f~~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l  260 (597)
                      |||++|+||.++....     ++..+..      .+.   .|+ ...|...|+++|..+|+.|+++++++++|.+||+++
T Consensus       279 ~GKsln~lr~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~-~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~L  357 (677)
T 3rip_A          279 VGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFS-LVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKII  357 (677)
T ss_dssp             HHHHHHTCCC-CCSCC---CTTCSHHHHHHHHHHHHHTCSSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHHHHHHHccCCCCCcccccccchHHHHHHHHHHHhccccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            9999999999765421     0000000      011   111 146788999999999999999999999999999999


Q ss_pred             hHhHhcCCCchHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHhhhhcccccc
Q 007585          261 KRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKT  340 (597)
Q Consensus       261 ~~~fLl~~Gdf~~~f~~~~~~~l~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~~~~~~  340 (597)
                      |+||||++|||+..|++.++++|.+|+.+++..+|+..|+.|++.+....+++.+.+.+.+........ ......  ..
T Consensus       358 k~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~--~~  434 (677)
T 3rip_A          358 KDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAR--EG  434 (677)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccc--cc
Confidence            999999999999999999999999999999999999999999998766666666677665543321100 000000  00


Q ss_pred             CCCCCCCCCCCCCcceeEEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHH
Q 007585          341 SSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISR  420 (597)
Q Consensus       341 ~~~~~~~~~~~~~~~~d~l~L~y~v~wPL~lilt~~~l~~Y~~iFrfLl~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~  420 (597)
                      .+ ......+.+..|||+|+|+|+|||||++|||+++|.+|++||+|||++||+++.|+++|+.++..+........+++
T Consensus       435 ~~-~~~~~~~~~~~~~d~l~L~Y~v~~PL~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~  513 (677)
T 3rip_A          435 PS-RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK  513 (677)
T ss_dssp             ------------CCTTTTEEEEECCCTTGGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH
T ss_pred             cc-cccccccCCccchheEEEEEeCCChHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH
Confidence            00 00112234678999999999999999999999999999999999999999999999999987654433222223344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 007585          421 SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQY  500 (597)
Q Consensus       421 ~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~~~f~~~l~~~~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~~~~F  500 (597)
                       +.+|++|+|||+++++|++++||+++|.+|++++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++|
T Consensus       514 -~~lr~~m~~Fv~~l~~Y~~~~Vie~~w~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F  592 (677)
T 3rip_A          514 -WRLRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSF  592 (677)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence             8899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 007585          501 AAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAE  580 (597)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~  580 (597)
                      |..+++..      .. .                             .+...+++++++++|++++..|+++|++++ +.
T Consensus       593 ~~~~~~~~------~~-~-----------------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~  635 (677)
T 3rip_A          593 CSLVSQNL------GP-L-----------------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NH  635 (677)
T ss_dssp             HHHHTTCC---------C-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred             HHHHHhhc------cc-c-----------------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            99986410      00 0                             111246799999999999999999999974 46


Q ss_pred             chHHHHHHHHhccCCC
Q 007585          581 PYLTHLAQLVLGVGFD  596 (597)
Q Consensus       581 ~~~~~l~~ll~rld~n  596 (597)
                      +..++|++||+|||||
T Consensus       636 ~~~~~l~~Ll~rLd~N  651 (677)
T 3rip_A          636 QINSDLAQLLLRLDYN  651 (677)
T ss_dssp             SCCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHhCch
Confidence            6779999999999998

PyMOL of 3rip

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00