Citrus Sinensis ID: 007597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKVL
ccccccccccccHHccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHccccHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHcccccccccccccccHHHHHHHHHccccccccccccccccccEEEEccccEEcccccccccccccEEcccccEEEEEEcEEEEEcccccEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHcHHHHHHHHcHHHHHHHHHHHcccccccccccccEEEccccccccHHHHHHHHHHHcccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccHHHHHcccccHHHHHHHHHHHHHcHHccHHHHcccccccccccccHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccHcccccccccHHccccccccccccHHHHHHHHHHHHEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEccHHHHHHHHccHHHHHHHHHHccccHHHHHcccccEEEcccHHHHHHHHHHHHHHHccccEEEEEEcccEcccEEEEEccEEEEEccccccccccccEEcHHHcEEEEEccEEEEccccEEEEEccEEEEEEEEEEEEEccccccEEEEEEEEEEccccccEccEcccccHHHHHHcccccHHHHcEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHEEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHEEEEcccccHHHccEEEHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccEEcccccEEEEHHHHHHHccccEEEccHHHHHHHHHcccHHHHHHcHHHEEEccccEccHHHHHHccHHHHHHHHHHHcccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcc
madakangKNEAAKLAkipaaanplanepsaiasnisyhvqysphfsptkfepeqafFATAESVRDRLIQQWNETYhhfnkvdpkqtYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDaalgngglgrlascfldsmatlnlpawgyglryryglFKQKITKQGQEEVAEDWlekfspwevvrhdvvfpvrffgsvmvnpngtrkwvggEVVQAVaydipipgyktkntiSLRLWDakasaedfnlfqfndgqyeSAAQLHSRAQQICAvlypgdsteegKLLRLKQQFFLCSASLQDMILRFKErksgrqwsefpSKVAVQLndthptlaIPELMRLLMDeeglgwdeawdITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRsdleskipsmcildnnpkkpvvRMANLCVVSAHTVNGVAQLHSDILKADLFADYVslwpnklqnktngitprrwlrfcnpELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVtgvtidpnslfDIQVKRIHEYKRQLLNILGAIYrykklkvl
MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAydipipgykTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRsdleskipsmcildnnpkkPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNklqnktngitprrwlRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNIlgaiyrykklkvl
MADAKANGKNEaaklakipaaanplanEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDaalgngglgrlaSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKVL
**********************************NISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKL***
******************************AIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKVL
*************KLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKVL
********************AANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKV*
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query596 2.2.26 [Sep-21-2011]
Q9SD76 841 Alpha-glucan phosphorylas yes no 0.991 0.702 0.804 0.0
P32811 838 Alpha-glucan phosphorylas N/A no 0.978 0.695 0.811 0.0
Q9LKJ3 832 Alpha-glucan phosphorylas N/A no 0.969 0.694 0.798 0.0
P53537 842 Alpha-glucan phosphorylas N/A no 0.991 0.701 0.790 0.0
Q9LIB2 962 Alpha-glucan phosphorylas no no 0.964 0.597 0.569 0.0
P04045 966 Alpha-1,4 glucan phosphor N/A no 0.956 0.590 0.524 0.0
Q00766 853 Glycogen phosphorylase 1 yes no 0.949 0.663 0.518 1e-175
P27598 955 Alpha-1,4 glucan phosphor N/A no 0.681 0.425 0.635 1e-157
P53536 1003 Alpha-1,4 glucan phosphor N/A no 0.686 0.407 0.623 1e-154
P34114 993 Glycogen phosphorylase 2 no no 0.954 0.573 0.481 1e-153
>sp|Q9SD76|PHS2_ARATH Alpha-glucan phosphorylase 2, cytosolic OS=Arabidopsis thaliana GN=PHS2 PE=2 SV=1 Back     alignment and function desciption
 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/594 (80%), Positives = 531/594 (89%), Gaps = 3/594 (0%)

Query: 4   AKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAES 63
           A ANGK   +   KI A ANP A++ + IA NI YH +YSPHFSP KF PEQA +ATAES
Sbjct: 2   ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAES 61

Query: 64  VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHV 123
           +RDRLIQ WNETY HFNKVDPKQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ 
Sbjct: 62  LRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYE 121

Query: 124 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEV 183
           LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYR+GLFKQ ITK+GQEE+
Sbjct: 122 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEI 181

Query: 184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKN 243
            EDWLEKFSPWE+VRHDVVFPVRFFG V VNP+G+RKWV G+VVQA+AYD+PIPGY TKN
Sbjct: 182 PEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQALAYDVPIPGYGTKN 241

Query: 244 TISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQ 303
           TISLRLW+AKA AED +LFQFN+G+YE AAQLHSRAQQIC VLYPGD+TE GKLLRLKQQ
Sbjct: 242 TISLRLWEAKARAEDLDLFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQ 301

Query: 304 FFLCSASLQDMILRFKERKS---GRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
           FFLCSASLQD+I RF ER +    R+WSEFPSKVAVQ+NDTHPTLAIPELMRLLMD+ GL
Sbjct: 302 FFLCSASLQDIISRFHERSTTEGSRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGL 361

Query: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
           GWDEAWD+T++TVAYTNHTVLPEALEKWSQ++MWKLLPRHMEIIEEIDKRF+  +R TR 
Sbjct: 362 GWDEAWDVTSKTVAYTNHTVLPEALEKWSQSLMWKLLPRHMEIIEEIDKRFVQTIRDTRV 421

Query: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
           DLE KI S+ ILDNNP+KPVVRMANLCVVS+HTVNGVAQLHSDILKA+LFADYVS+WPNK
Sbjct: 422 DLEDKISSLSILDNNPQKPVVRMANLCVVSSHTVNGVAQLHSDILKAELFADYVSIWPNK 481

Query: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESA 540
            QNKTNGITPRRWLRFC+PELS IITKWLKTD+W+T+LDLL GLRQFADN ELQ+EW SA
Sbjct: 482 FQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWITDLDLLTGLRQFADNEELQSEWASA 541

Query: 541 KMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
           K A+KK LA YI RVTGV+IDP SLFDIQVKRIHEYKRQL+NILG +YR+KKLK
Sbjct: 542 KTANKKRLAQYIERVTGVSIDPTSLFDIQVKRIHEYKRQLMNILGVVYRFKKLK 595
Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1
>sp|P32811|PHSH_SOLTU Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q9LKJ3|PHSH_WHEAT Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|P53537|PHSH_VICFA Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1 Back     alignment and function description
>sp|Q9LIB2|PHS1_ARATH Alpha-glucan phosphorylase 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1 Back     alignment and function description
>sp|P04045|PHSL1_SOLTU Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 Back     alignment and function description
>sp|Q00766|PHS1_DICDI Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3 Back     alignment and function description
>sp|P27598|PHSL_IPOBA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1 Back     alignment and function description
>sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2 Back     alignment and function description
>sp|P34114|PHS2_DICDI Glycogen phosphorylase 2 OS=Dictyostelium discoideum GN=glpD PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
21063929 840 starch phosphorylase type H [Citrus hybr 0.996 0.707 0.998 0.0
225434692 843 PREDICTED: alpha-glucan phosphorylase, H 0.996 0.704 0.844 0.0
255558824 849 glycogen phosphorylase, putative [Ricinu 0.971 0.681 0.850 0.0
224104329 853 predicted protein [Populus trichocarpa] 0.991 0.692 0.835 0.0
449450784 844 PREDICTED: alpha-glucan phosphorylase, H 0.996 0.703 0.812 0.0
187370620 843 alpha-1,4-glucan phosphorylase H isozyme 1.0 0.706 0.816 0.0
297819302 841 alpha-glucan phosphorylase 2 [Arabidopsi 0.991 0.702 0.809 0.0
356527232 846 PREDICTED: alpha-glucan phosphorylase, H 0.978 0.689 0.813 0.0
15232704 841 alpha-glucan phosphorylase isozyme H [Ar 0.991 0.702 0.804 0.0
356566195 846 PREDICTED: alpha-glucan phosphorylase, H 0.994 0.700 0.801 0.0
>gi|21063929|gb|AAM29154.1| starch phosphorylase type H [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1241 bits (3211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/594 (99%), Positives = 593/594 (99%)

Query: 1   MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT 60
           MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT
Sbjct: 1   MADAKANGKNEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFAT 60

Query: 61  AESVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL 120
           AE VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL
Sbjct: 61  AEVVRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNL 120

Query: 121 GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ 180
           GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ
Sbjct: 121 GHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQ 180

Query: 181 EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK 240
           EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK
Sbjct: 181 EEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYK 240

Query: 241 TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL 300
           TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL
Sbjct: 241 TKNTISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRL 300

Query: 301 KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
           KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL
Sbjct: 301 KQQFFLCSASLQDMILRFKERKSGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360

Query: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
           GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS
Sbjct: 361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420

Query: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
           DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK
Sbjct: 421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480

Query: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESA 540
           LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESA
Sbjct: 481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESA 540

Query: 541 KMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
           KMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK
Sbjct: 541 KMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594

Source: Citrus hybrid cultivar

Species: Citrus hybrid cultivar

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434692|ref|XP_002280732.1| PREDICTED: alpha-glucan phosphorylase, H isozyme [Vitis vinifera] gi|297745953|emb|CBI16009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255558824|ref|XP_002520435.1| glycogen phosphorylase, putative [Ricinus communis] gi|223540277|gb|EEF41848.1| glycogen phosphorylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224104329|ref|XP_002313399.1| predicted protein [Populus trichocarpa] gi|222849807|gb|EEE87354.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449450784|ref|XP_004143142.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Cucumis sativus] gi|449496617|ref|XP_004160181.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|187370620|dbj|BAG31926.1| alpha-1,4-glucan phosphorylase H isozyme [Cucurbita maxima] Back     alignment and taxonomy information
>gi|297819302|ref|XP_002877534.1| alpha-glucan phosphorylase 2 [Arabidopsis lyrata subsp. lyrata] gi|297323372|gb|EFH53793.1| alpha-glucan phosphorylase 2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527232|ref|XP_003532216.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Glycine max] Back     alignment and taxonomy information
>gi|15232704|ref|NP_190281.1| alpha-glucan phosphorylase isozyme H [Arabidopsis thaliana] gi|14916634|sp|Q9SD76.1|PHS2_ARATH RecName: Full=Alpha-glucan phosphorylase 2, cytosolic; Short=AtPHS2; AltName: Full=Alpha-glucan phosphorylase, H isozyme; AltName: Full=Starch phosphorylase H gi|6522578|emb|CAB61943.1| starch phosphorylase H (cytosolic form)-like protein [Arabidopsis thaliana] gi|19699065|gb|AAL90900.1| AT3g46970/F13I12_20 [Arabidopsis thaliana] gi|27764912|gb|AAO23577.1| At3g46970/F13I12_20 [Arabidopsis thaliana] gi|332644704|gb|AEE78225.1| alpha-glucan phosphorylase isozyme H [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356566195|ref|XP_003551320.1| PREDICTED: alpha-glucan phosphorylase, H isozyme-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
TAIR|locus:2075576 841 PHS2 "alpha-glucan phosphoryla 0.991 0.702 0.772 9.4e-256
TAIR|locus:2093787 962 PHS1 "alpha-glucan phosphoryla 0.721 0.446 0.578 3.9e-192
UNIPROTKB|P04045 966 P04045 "Alpha-1,4 glucan phosp 0.682 0.421 0.598 1.3e-189
UNIPROTKB|P53535 974 STP-1 "Alpha-1,4 glucan phosph 0.681 0.416 0.582 3.6e-187
DICTYBASE|DDB_G0281383 853 glpV "glycogen phosphorylase b 0.942 0.658 0.497 9.5e-153
ASPGD|ASPL0000059322 879 AN1015 [Emericella nidulans (t 0.897 0.608 0.498 4.8e-142
DICTYBASE|DDB_G0291123 993 glpD "glycogen phosphorylase a 0.924 0.554 0.472 4.9e-140
UNIPROTKB|G4MW66 888 MGG_01819 "Phosphorylase" [Mag 0.901 0.604 0.484 1.1e-137
TIGR_CMR|GSU_2066 837 GSU_2066 "glycogen phosphoryla 0.919 0.654 0.456 1.4e-133
UNIPROTKB|F1P832 842 PYGM "Phosphorylase" [Canis lu 0.937 0.663 0.465 9.1e-132
TAIR|locus:2075576 PHS2 "alpha-glucan phosphorylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2462 (871.7 bits), Expect = 9.4e-256, P = 9.4e-256
 Identities = 459/594 (77%), Positives = 510/594 (85%)

Query:     4 AKANGKNEXXXXXXXXXXXXXXXXEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAES 63
             A ANGK                  + + IA NI YH +YSPHFSP KF PEQA +ATAES
Sbjct:     2 ANANGKAATSLPEKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAES 61

Query:    64 VRDRLIQQWNETYHHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHV 123
             +RDRLIQ WNETY HFNKVDPKQTYYLSME+LQGR LTNAIG+L++Q  YADAL  LG+ 
Sbjct:    62 LRDRLIQLWNETYVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYE 121

Query:   124 LEEIAEQEKDXXXXXXXXXXXXSCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEV 183
             LEEIAEQEKD            SCFLDSMATLNLPAWGYGLRYR+GLFKQ ITK+GQEE+
Sbjct:   122 LEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQIITKKGQEEI 181

Query:   184 AEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKN 243
              EDWLEKFSPWE+VRHDVVFPVRFFG V VNP+G+RKWV G+VVQA+AYD+PIPGY TKN
Sbjct:   182 PEDWLEKFSPWEIVRHDVVFPVRFFGKVQVNPDGSRKWVDGDVVQALAYDVPIPGYGTKN 241

Query:   244 TISLRLWDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQ 303
             TISLRLW+AKA AED +LFQFN+G+YE AAQLHSRAQQIC VLYPGD+TE GKLLRLKQQ
Sbjct:   242 TISLRLWEAKARAEDLDLFQFNEGEYELAAQLHSRAQQICTVLYPGDATENGKLLRLKQQ 301

Query:   304 FFLCSASLQDMILRFKERKS---GRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGL 360
             FFLCSASLQD+I RF ER +    R+WSEFPSKVAVQ+NDTHPTLAIPELMRLLMD+ GL
Sbjct:   302 FFLCSASLQDIISRFHERSTTEGSRKWSEFPSKVAVQMNDTHPTLAIPELMRLLMDDNGL 361

Query:   361 GWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRS 420
             GWDEAWD+T++TVAYTNHTVLPEALEKWSQ++MWKLLPRHMEIIEEIDKRF+  +R TR 
Sbjct:   362 GWDEAWDVTSKTVAYTNHTVLPEALEKWSQSLMWKLLPRHMEIIEEIDKRFVQTIRDTRV 421

Query:   421 DLESKIPSMCILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNK 480
             DLE KI S+ ILDNNP+KPVVRMANLCVVS+HTVNGVAQLHSDILKA+LFADYVS+WPNK
Sbjct:   422 DLEDKISSLSILDNNPQKPVVRMANLCVVSSHTVNGVAQLHSDILKAELFADYVSIWPNK 481

Query:   481 LQNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESA 540
              QNKTNGITPRRWLRFC+PELS IITKWLKTD+W+T+LDLL GLRQFADN ELQ+EW SA
Sbjct:   482 FQNKTNGITPRRWLRFCSPELSDIITKWLKTDKWITDLDLLTGLRQFADNEELQSEWASA 541

Query:   541 KMASKKHLADYIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
             K A+KK LA YI RVTGV+IDP SLFDIQVKRIHEYKRQL+NILG +YR+KKLK
Sbjct:   542 KTANKKRLAQYIERVTGVSIDPTSLFDIQVKRIHEYKRQLMNILGVVYRFKKLK 595
GO:0004645 "phosphorylase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA;TAS
GO:0009414 "response to water deprivation" evidence=IMP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009507 "chloroplast" evidence=IDA
GO:0019252 "starch biosynthetic process" evidence=RCA
TAIR|locus:2093787 PHS1 "alpha-glucan phosphorylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P04045 P04045 "Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)] Back     alignment and assigned GO terms
UNIPROTKB|P53535 STP-1 "Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic" [Solanum tuberosum (taxid:4113)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281383 glpV "glycogen phosphorylase b" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000059322 AN1015 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291123 glpD "glycogen phosphorylase a" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4MW66 MGG_01819 "Phosphorylase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2066 GSU_2066 "glycogen phosphorylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|F1P832 PYGM "Phosphorylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q00766PHS1_DICDI2, ., 4, ., 1, ., 10.51830.94960.6635yesno
Q9SD76PHS2_ARATH2, ., 4, ., 1, ., 10.80470.99160.7027yesno
Q9LKJ3PHSH_WHEAT2, ., 4, ., 1, ., 10.79860.96970.6947N/Ano
P32811PHSH_SOLTU2, ., 4, ., 1, ., 10.81150.97810.6957N/Ano
P53537PHSH_VICFA2, ., 4, ., 1, ., 10.79050.99160.7019N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.10.963
4th Layer2.4.1.10.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
cd04300 797 cd04300, GT1_Glycogen_Phosphorylase, This is a fam 0.0
TIGR02093 794 TIGR02093, P_ylase, glycogen/starch/alpha-glucan p 0.0
pfam00343 712 pfam00343, Phosphorylase, Carbohydrate phosphoryla 0.0
PRK14985 798 PRK14985, PRK14985, maltodextrin phosphorylase; Pr 0.0
COG0058 750 COG0058, GlgP, Glucan phosphorylase [Carbohydrate 0.0
PRK14986 815 PRK14986, PRK14986, glycogen phosphorylase; Provis 0.0
TIGR02094 601 TIGR02094, more_P_ylases, alpha-glucan phosphoryla 1e-14
cd04299 778 cd04299, GT1_Glycogen_Phosphorylase_like, This fam 3e-13
>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases Back     alignment and domain information 
 Score =  913 bits (2362), Expect = 0.0
 Identities = 309/565 (54%), Positives = 392/565 (69%), Gaps = 8/565 (1%)

Query: 33  ASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYYLSM 92
              I  H++Y+    P +      + A A +VRDRL+++WN T  ++   D K+ YYLS+
Sbjct: 1   KKAIVDHLEYTLGKDPEEATDRDLYQALAYAVRDRLVERWNRTQQYYYDKDAKRVYYLSL 60

Query: 93  EFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSM 152
           EFL GR L N + +L + +   +AL  LG  LE++ EQE DA LGNGGLGRLA+CFLDS+
Sbjct: 61  EFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSL 120

Query: 153 ATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVM 212
           ATL LP +GYG+RY YGLFKQKI    Q E+ ++WL   +PWE+ R DV  PVRF G V 
Sbjct: 121 ATLGLPGYGYGIRYEYGLFKQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVE 180

Query: 213 VNPNGTR---KWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
              +G R   +WV GE V AV YD PIPGY T    +LRLW A+AS E+F+L  FN G Y
Sbjct: 181 HYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLRLWSAEAS-EEFDLDAFNRGDY 239

Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSGRQWSE 329
             A +  +RA+ I  VLYP DSTEEGK LRLKQQ+F  SASLQD+I RFK  K+    SE
Sbjct: 240 IRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFK--KTHGPLSE 297

Query: 330 FPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWS 389
           FP KVA+QLNDTHP LAIPELMR+L+DEEGL WDEAWDITT+T AYTNHT+LPEALEKW 
Sbjct: 298 FPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWP 357

Query: 390 QAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRMANLCVV 449
             +  +LLPRH+EII EI++RF+  VR+     E +I  M I++   +K  VRMA+L +V
Sbjct: 358 VDLFERLLPRHLEIIYEINRRFLEEVRAKYPGDEDRIRRMSIIEEGGEK-QVRMAHLAIV 416

Query: 450 SAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSKIITKWL 509
            +H+VNGVA LHS++LK  +F D+  L+P K  NKTNGITPRRWL   NP LS +IT+ +
Sbjct: 417 GSHSVNGVAALHSELLKETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETI 476

Query: 510 KTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPNSLFDIQ 569
             D WVT+LD L  L  FAD+     E+ + K A+K+ LA YI + TGV +DP+SLFD+Q
Sbjct: 477 GDD-WVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERLAAYIKKTTGVEVDPDSLFDVQ 535

Query: 570 VKRIHEYKRQLLNILGAIYRYKKLK 594
           VKRIHEYKRQLLN+L  I+ Y ++K
Sbjct: 536 VKRIHEYKRQLLNVLHIIHLYNRIK 560

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797
>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase Back     alignment and domain information
>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|233723 TIGR02094, more_P_ylases, alpha-glucan phosphorylases Back     alignment and domain information
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 596
KOG2099 843 consensus Glycogen phosphorylase [Carbohydrate tra 100.0
TIGR02093 794 P_ylase glycogen/starch/alpha-glucan phosphorylase 100.0
cd04300 797 GT1_Glycogen_Phosphorylase This is a family of oli 100.0
PRK14985 798 maltodextrin phosphorylase; Provisional 100.0
PRK14986 815 glycogen phosphorylase; Provisional 100.0
PF00343 713 Phosphorylase: Carbohydrate phosphorylase; InterPr 100.0
COG0058 750 GlgP Glucan phosphorylase [Carbohydrate transport 100.0
cd04299 778 GT1_Glycogen_Phosphorylase_like This family is mos 100.0
TIGR02094 601 more_P_ylases alpha-glucan phosphorylases. This fa 100.0
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 99.23
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 99.17
PRK00654 466 glgA glycogen synthase; Provisional 98.91
PRK14098 489 glycogen synthase; Provisional 98.8
PLN02939 977 transferase, transferring glycosyl groups 98.74
PRK14099 485 glycogen synthase; Provisional 98.23
PF08323245 Glyco_transf_5: Starch synthase catalytic domain; 98.06
PLN02316 1036 synthase/transferase 97.53
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 96.79
PF11897118 DUF3417: Protein of unknown function (DUF3417); In 96.24
cd03793 590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 84.71
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=5.4e-195  Score=1540.61  Aligned_cols=581  Identities=52%  Similarity=0.903  Sum_probs=568.7

Q ss_pred             chhhhhcccccccCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcEEEE
Q 007597           10 NEAAKLAKIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY   89 (596)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~ik~~i~~~l~~~~gk~~~~as~~~~Y~Ala~~vrd~l~~~W~~T~~~~~~~~~k~vyY   89 (596)
                      .+.++|+||||++.+...++.++++.|.+|+++++.+++..+++.+.|.|+|.+|||.|..+|++|++.|++.++|||||
T Consensus         6 ~~~~~r~qis~r~~~~~~~~~e~~~~f~~H~~ftl~k~~~~~~~~~~yfA~a~tvRD~Lv~~W~rTqqhy~~~dpKrvYY   85 (843)
T KOG2099|consen    6 IDSEKRKQISVRGIAGVEDVAEVKKSFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRVYY   85 (843)
T ss_pred             cccchhhhcchhcccCCccHHHHHHHHHhheeeeeecCcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeE
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EechhccccchHHHhhcCCcHHHHHHHHHHcCCChHHHHhhhccCCCCCCCchhchhhhHhhhhccCCCeEEEEeccCCc
Q 007597           90 LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYG  169 (596)
Q Consensus        90 ~SmEfl~gr~l~nnl~nLg~~~~~~~~l~~lg~~l~~l~~~E~d~~LgnGGLGrLAgd~ldSaA~LglP~~G~GL~Y~~G  169 (596)
                      |||||+|||+|+|.++||||+..|.+||.+||+|+++|+|+|+|||||||||||||+||||||||||+|++||||||+||
T Consensus        86 LSlEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyG  165 (843)
T KOG2099|consen   86 LSLEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYG  165 (843)
T ss_pred             eehHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCeeeeecccccccCCCcccccCCeEEEEEECCeEEECCCCceeeeCCeEEEEEEEeeccCCCCCCceEEEEE
Q 007597          170 LFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRL  249 (596)
Q Consensus       170 yF~Q~I~dG~QvE~pd~Wl~~~~pwe~~r~~~~~~V~f~g~v~~~~~g~~~~~~~~~v~a~~yd~pi~g~~~~~~~~lrL  249 (596)
                      +|+|+|.+|||+|.||+||+.|||||+.|+++++||+|+|+|+...+| .+|++++.|.|+|||+|||||+|++||+|||
T Consensus       166 iF~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRL  244 (843)
T KOG2099|consen  166 IFKQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRL  244 (843)
T ss_pred             hHHHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeee
Confidence            999999999999999999999999999999999999999999987777 5799999999999999999999999999999


Q ss_pred             EecccCCccccccccCcchhhhHHhhhhhhccceeeecCCCCchhhhhhhhhhhhhhhhhhHHHHHHHHHHhccC-----
Q 007597          250 WDAKASAEDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG-----  324 (596)
Q Consensus       250 W~a~v~~~~~~l~~~~~~~y~~a~~~~~~~r~IT~~LYp~D~~~~GkelRLkQeyfl~~a~lqdiir~~~~~~g~-----  324 (596)
                      |+|+ ++++|||..||.|+|.+|+.+++.+++||.+|||+|+..+||+||||||||+|+||+|||||||+...+|     
T Consensus       245 Wsak-a~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~  323 (843)
T KOG2099|consen  245 WSAK-APNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPV  323 (843)
T ss_pred             eccC-CCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCccccc
Confidence            9999 7779999999999999999999999999999999999999999999999999999999999999865543     


Q ss_pred             -cccccCCCCeEEEeCCCchhhhHHHHHHHHHHhcCCCHHHHHHHhhhceeeeeccccccccccccHHHHHHhchhHHHH
Q 007597          325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEI  403 (596)
Q Consensus       325 -~~l~~l~~~~~ihlNdtHpalai~ElmR~l~de~gl~~~~A~~iv~~~~~fTnHTpvpeglE~wp~~l~~~~lpr~~~i  403 (596)
                       ..+++||++++||||||||+||||||||+|||.+||+|++||+||.+||+|||||++|||+|+||++||+++||||++|
T Consensus       324 ~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleI  403 (843)
T KOG2099|consen  324 RTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEI  403 (843)
T ss_pred             ccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHH
Confidence             3499999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCChhhhcccccccCCCCCC--eeeeehhhhhcCCchHhHHHHhHHHHHHhhhcchhhhcCCCC
Q 007597          404 IEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKP--VVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKL  481 (596)
Q Consensus       404 i~~in~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~--~~~Ma~LAl~~S~~vNGVS~lH~ev~k~~~f~~~~~l~P~k~  481 (596)
                      ||+||.+|++.+.+.+|.|.|++++|||+++  +++  ++|||+||+++||.|||||++||+|+|+.+|+||+++||+||
T Consensus       404 Iy~In~~~l~~i~~~fp~D~drlrrmsiiee--~~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK~~~F~Df~e~~P~KF  481 (843)
T KOG2099|consen  404 IYEINQRFLQTVAAKFPGDVDRLRRMSIIEE--NSPEKRINMAHLCIVGSHAVNGVAEIHSEILKQSVFKDFYELEPEKF  481 (843)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHhhhhhhhc--CCccceeeeeeeeeecccccccHHHHHHHHHHHHHHHHHHHhChHHh
Confidence            9999999999999999999999999999998  534  999999999999999999999999999999999999999999


Q ss_pred             cccccccCccccccccChhHHHHHHHhcCCcccccCcchHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Q 007597          482 QNKTNGITPRRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTID  561 (596)
Q Consensus       482 ~niTNGV~~rrWl~~~np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~d~~~~~~~~~~k~~~K~~L~~~i~~~~g~~ld  561 (596)
                      +|+||||||||||.+|||.|+++|++.||+ +|++|+++|.+|.++++|++|+++|+++|++||.+|++||++.+|+.+|
T Consensus       482 qNkTNGITPRRWL~~cnP~LadlI~e~ige-~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~NKlk~a~~le~e~~v~in  560 (843)
T KOG2099|consen  482 QNKTNGITPRRWLLLCNPGLADLITEKIGE-EWITDLDQLTKLRKFADDEEFQREWAKVKQENKLKLAAYLEKEYGVKIN  560 (843)
T ss_pred             ccccCCcCHHHHHHhcCchHHHHHHHHhhh-HhhhhHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHHHHHHhCcccC
Confidence            999999999999999999999999999996 9999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccceeccccccccccchhhHHHHHHHhhc
Q 007597          562 PNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLKV  595 (596)
Q Consensus       562 p~~lfd~~arR~heYKRq~Lnil~~i~ry~~ik~  595 (596)
                      |++|||+|+||+||||||+||+||+|+||++||+
T Consensus       561 p~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~  594 (843)
T KOG2099|consen  561 PSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKE  594 (843)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999985

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases Back     alignment and domain information
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases Back     alignment and domain information
>PRK14985 maltodextrin phosphorylase; Provisional Back     alignment and domain information
>PRK14986 glycogen phosphorylase; Provisional Back     alignment and domain information
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences Back     alignment and domain information
>TIGR02094 more_P_ylases alpha-glucan phosphorylases Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
1z8d_A 842 Crystal Structure Of Human Muscle Glycogen Phosphor 1e-142
3nc4_A 841 The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbaz 1e-140
2pyd_A 843 The Crystal Structure Of Glycogen Phosphorylase In 1e-140
1c8l_A 842 Synergistic Inhibition Of Glycogen Phosphorylase A 1e-140
2g9q_A 842 The Crystal Structure Of The Glycogen Phosphorylase 1e-140
4ej2_A 825 Crystal Structure Of Gpb In Complex With Dk10 Lengt 1e-140
1pyg_A 842 Structural Basis For The Activation Of Glycogen Pho 1e-140
2gm9_A 825 Structure Of Rabbit Muscle Glycogen Phosphorylase I 1e-140
2ffr_A 825 Crystallographic Studies On N-Azido-Beta-D-Glucopyr 1e-140
2gj4_A 824 Structure Of Rabbit Muscle Glycogen Phosphorylase I 1e-140
1z6p_A 842 Glycogen Phosphorylase Amp Site Inhibitor Complex L 1e-140
1gpa_A 842 Structural Mechanism For Glycogen Phosphorylase Con 1e-140
7gpb_A 842 Structural Mechanism For Glycogen Phosphorylase Con 1e-140
1abb_A 828 Control Of Phosphorylase B Conformation By A Modifi 1e-140
1noi_A 842 Complex Of Glycogen Phosphorylase With A Transition 1e-140
1c50_A 830 Identification And Structural Characterization Of A 1e-140
1ygp_B 879 Phosphorylated Form Of Yeast Glycogen Phosphorylase 1e-139
2qll_A 847 Human Liver Glycogen Phosphorylase- Gl Complex Leng 1e-134
1em6_A 847 Human Liver Glycogen Phosphorylase A Complexed With 1e-134
2zb2_A 849 Human Liver Glycogen Phosphorylase A Complexed With 1e-134
1fa9_A 846 Human Liver Glycogen Phosphorylase A Complexed With 1e-134
1fc0_A 846 Human Liver Glycogen Phosphorylase Complexed With N 1e-134
3dds_A 848 Crystal Structure Of Glycogen Phosphorylase Complex 1e-134
3ceh_A 809 Human Liver Glycogen Phosphorylase (Tense State) In 1e-134
1xoi_A 846 Human Liver Glycogen Phosphorylase A Complexed With 1e-134
1l5v_A 796 Crystal Structure Of The Maltodextrin Phosphorylase 1e-115
1qm5_A 796 Phosphorylase Recognition And Phosphorylysis Of Its 1e-114
1ahp_A 797 Oligosaccharide Substrate Binding In Escherichia Co 1e-112
2ecp_A 796 The Crystal Structure Of The E. Coli Maltodextrin P 1e-112
2c4m_A 796 Starch Phosphorylase: Structural Studies Explain Ox 1e-111
>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842 Back     alignment and structure 
Iteration: 1

 Score =  500 bits (1288), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 264/571 (46%), Positives = 359/571 (62%), Gaps = 10/571 (1%)
Query: 30  SAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETYHHFNKVDPKQTYY 89
           + +  N + H+ ++         P   +FA A +VRD L+ +W  T  H+ + DPK+ YY
Sbjct: 26  TELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQQHYYEKDPKRIYY 85
Query: 90  LSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDXXXXXXXXXXXXSCFL 149
           LS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+D            +CFL
Sbjct: 86  LSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFL 145
Query: 150 DSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEVVRHDVVFPVRFFG 209
           DSMATL L A+GYG+RY +G+F QKI+   Q E A+DWL   +PWE  R +   PV F+G
Sbjct: 146 DSMATLGLAAYGYGIRYEFGIFNQKISGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYG 205
Query: 210 SVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASAEDFNLFQFNDGQY 269
            V     G  KWV  +VV A+ YD P+PGY+     ++RLW AKA   DFNL  FN G Y
Sbjct: 206 HVEHTSQGA-KWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP-NDFNLKDFNVGGY 263
Query: 270 ESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMILRFKERKSG----- 324
             A    + A+ I  VLYP D+  EGK LRLKQ++F+ +A+LQD+I RFK  K G     
Sbjct: 264 IQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 323
Query: 325 -RQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITTRTVAYTNHTVLPE 383
              +  FP KVA+QLNDTHP+LAIPELMR+L+D E + WD+AWD+T RT AYTNHTVLPE
Sbjct: 324 RTNFDAFPDKVAIQLNDTHPSLAIPELMRILVDLERMDWDKAWDVTVRTCAYTNHTVLPE 383
Query: 384 ALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMCILDNNPKKPVVRM 443
           ALE+W   ++  LLPRH++II EI++RF+  V +       ++  M +++    K  + M
Sbjct: 384 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMSLVEEGAVKR-INM 442
Query: 444 ANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITPRRWLRFCNPELSK 503
           A+LC+  +H VNGVA++HS+ILK  +F D+  L P+K QNKTNGITPRRWL  CNP L++
Sbjct: 443 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAE 502
Query: 504 IITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLADYIWRVTGVTIDPN 563
           +I + +  D ++++LD L  L  F D+     +    K  +K   A Y+ R   V I+PN
Sbjct: 503 VIAERIGED-FISDLDQLRKLLSFVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPN 561
Query: 564 SLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
           SLFDIQVKRIHEYKRQLLN L  I  Y ++K
Sbjct: 562 SLFDIQVKRIHEYKRQLLNCLHVITLYNRIK 592
>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives To Glycogen Phosphorylase: A New Class Of Inhibitors Length = 841 Back     alignment and structure
>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex With Glucose At 100 K Length = 843 Back     alignment and structure
>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A Potential Antidiabetic Drug And Caffeine Length = 842 Back     alignment and structure
>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab Complex Length = 842 Back     alignment and structure
>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10 Length = 825 Back     alignment and structure
>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen Phosphorylase B By Adenosine Monophosphate Length = 842 Back     alignment and structure
>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Thienopyrrole Length = 825 Back     alignment and structure
>pdb|2FFR|A Chain A, Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D- Glucopyranosylamine Length = 825 Back     alignment and structure
>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand Length = 824 Back     alignment and structure
>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex Length = 842 Back     alignment and structure
>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842 Back     alignment and structure
>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate Length = 828 Back     alignment and structure
>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State Analogue Nojirimycin Tetrazole And Phosphate In The T And R States Length = 842 Back     alignment and structure
>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel Allosteric Binding Site Of Glycogen Phosphorylase B Length = 830 Back     alignment and structure
>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847 Back     alignment and structure
>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847 Back     alignment and structure
>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849 Back     alignment and structure
>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846 Back     alignment and structure
>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846 Back     alignment and structure
>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848 Back     alignment and structure
>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809 Back     alignment and structure
>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846 Back     alignment and structure
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase Complexed With Glucose-1-Phosphate Length = 796 Back     alignment and structure
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question Length = 796 Back     alignment and structure
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli Maltodextrin Phsphorylase Length = 797 Back     alignment and structure
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin Phosphorylase Complex Length = 796 Back     alignment and structure
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion- Dependent Kinetic Stability And Regulatory Control. Length = 796 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 0.0
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 0.0
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 0.0
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-11
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824 Back     alignment and structure
 Score =  913 bits (2361), Expect = 0.0
 Identities = 271/584 (46%), Positives = 370/584 (63%), Gaps = 10/584 (1%)

Query: 17  KIPAAANPLANEPSAIASNISYHVQYSPHFSPTKFEPEQAFFATAESVRDRLIQQWNETY 76
           +I           + +  N + H+ ++         P   +FA A +VRD L+ +W  T 
Sbjct: 1   QISVRGLAGVENVTELKKNFNRHLHFTLVKDRNVATPRDYYFALAHTVRDHLVGRWIRTQ 60

Query: 77  HHFNKVDPKQTYYLSMEFLQGRTLTNAIGSLDIQNAYADALNNLGHVLEEIAEQEKDAAL 136
            H+ + DPK+ YYLS+EF  GRTL N + +L ++NA  +A   LG  +EE+ E E+DA L
Sbjct: 61  QHYYEKDPKRIYYLSLEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGL 120

Query: 137 GNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFKQKITKQGQEEVAEDWLEKFSPWEV 196
           GNGGLGRLA+CFLDSMATL L A+GYG+RY +G+F QKI    Q E A+DWL   +PWE 
Sbjct: 121 GNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEK 180

Query: 197 VRHDVVFPVRFFGSVMVNPNGTRKWVGGEVVQAVAYDIPIPGYKTKNTISLRLWDAKASA 256
            R +   PV F+G V     G + WV  +VV A+ YD P+PGY+     ++RLW AKA  
Sbjct: 181 ARPEFTLPVHFYGRVEHTSQGAK-WVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAKAP- 238

Query: 257 EDFNLFQFNDGQYESAAQLHSRAQQICAVLYPGDSTEEGKLLRLKQQFFLCSASLQDMIL 316
            DFNL  FN G Y  A    + A+ I  VLYP D+  EGK LRLKQ++F+ +A+LQD+I 
Sbjct: 239 NDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIR 298

Query: 317 RFKERK------SGRQWSEFPSKVAVQLNDTHPTLAIPELMRLLMDEEGLGWDEAWDITT 370
           RFK  K          +  FP KVA+QLNDTHP+LAIPELMR+L+D E L WD+AW++T 
Sbjct: 299 RFKSSKFGCRDPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTV 358

Query: 371 RTVAYTNHTVLPEALEKWSQAVMWKLLPRHMEIIEEIDKRFIAMVRSTRSDLESKIPSMC 430
           +T AYTNHTVLPEALE+W   ++  LLPRH++II EI++RF+  V +       ++  M 
Sbjct: 359 KTCAYTNHTVLPEALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFPGDVDRLRRMS 418

Query: 431 ILDNNPKKPVVRMANLCVVSAHTVNGVAQLHSDILKADLFADYVSLWPNKLQNKTNGITP 490
           +++    K  + MA+LC+  +H VNGVA++HS+ILK  +F D+  L P+K QNKTNGITP
Sbjct: 419 LVEEGAVK-RINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITP 477

Query: 491 RRWLRFCNPELSKIITKWLKTDQWVTNLDLLVGLRQFADNTELQAEWESAKMASKKHLAD 550
           RRWL  CNP L++II + +  + ++++LD L  L  + D+     +    K  +K   A 
Sbjct: 478 RRWLVLCNPGLAEIIAERIGEE-YISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAA 536

Query: 551 YIWRVTGVTIDPNSLFDIQVKRIHEYKRQLLNILGAIYRYKKLK 594
           Y+ R   V I+PNSLFD+QVKRIHEYKRQLLN L  I  Y ++K
Sbjct: 537 YLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIK 580
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796 Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
1ygp_A 879 Yeast glycogen phosphorylase; phosphorylated form, 100.0
2gj4_A 824 Glycogen phosphorylase, muscle form; transferase; 100.0
1l5w_A 796 Maltodextrin phosphorylase; enzymatic catalysis, s 100.0
2c4m_A 796 Glycogen phosphorylase; allosteric control, phosph 100.0
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 98.75
3nb0_A 725 Glycogen [starch] synthase isoform 2; glycogen syn 94.54
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Back     alignment and structure
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Back     alignment and structure
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Back     alignment and structure
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 596
d1ygpa_ 876 c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas 0.0
d2gj4a1 824 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit 0.0
d1l5wa_ 796 c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E 0.0
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824 Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
d1ygpa_ 876 Glycogen phosphorylase {Baker's yeast (Saccharomyc 100.0
d2gj4a1 824 Glycogen phosphorylase {Rabbit (Oryctolagus cunicu 100.0
d1l5wa_ 796 Maltodextrin phosphorylase (MALP) {Escherichia col 100.0
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 94.85
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 90.36
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure