Citrus Sinensis ID: 007602

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
MAEEVQKTESQETAAQVEEVVVQTDHVQPAEKTAMPAVEKEAPVTLPETDEASNKETETPKSSSGDDAESEQKVPESGSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFSAKTTPTPTPTPAPAATKEEEKKETEAVVAEEEKKPEQPSEPTKPEPEIAAQEEKETEVIEEKTAPEVAEAAEDDGAKTVEAIEETVVAVSSSVPQEQLPQSPEPKPEAKPAVTSENESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKPSSGHQSFKDELCCA
cccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccEEEEEEcccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHcccccccccccEEEEcccccHHHHHcccccccccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEEEEEEcccEEEEEEEEEcccccEEEEEEccEEccccccccccccEEEcccccEEEEEEEcccccccEEEEEEEEcccccccccHHHHccc
cccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHHccHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHccccHHHHHHHHccccccccHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHEEcccccccccEEEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHccHHHHHHEEEEcccHHHHHHHHHHcHccccccccEEEEEcccHHHHHHHHHccHHHcccEEccccccccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEcccEEEEEEEEEccccccEEEEEEccEEEccccccccccccEEEccccEEEEEEEcccccccEEEEEEEEcccHHHHHHHHHcccc
MAEEVQKTESQETAAQVEEVVVQTdhvqpaektampavekeapvtlpetdeasnketetpksssgddaeseqkvpesgsfkeestrvgdlpdneKKALDELKQVVQEALNKhefsakttptptptpapaatkeeeKKETEAVVAEeekkpeqpseptkpepeiaaqeeketevieektapevaeaaeddgaKTVEAIEETVVAVsssvpqeqlpqspepkpeakpavtseneskdtktepemgpeevyiwgiplladerSDVILLKFLRARDFKVKDAFTMLKNTIRWRKefgiddligqdlgddldktvfmhgfdkeghpvcynvygefqnkelyqktFSDEEKRQKFLRWRIQFLERSIRkldfrpggisTIVQVndlknspgpakWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMIspfltqrtrskfvfagpskSAETLLRYIAAEqlpvkygglskvgefaatdavteitvkpaakhtvefpvteechltWEVRVVGWEvsygaefvpstegSYTVIIQKAKKLasnaeqpvvcdsfkivepgkvvltidnptskkKKLLYRlktkpssghqsfkdelcca
maeevqktesqetaaqVEEVVVQTDhvqpaektampavekeapvtlpetdeasnketetpksssgddaeseqkvpesgsfkeestrvgdlpdnEKKALDELKQVVQEALNKhefsakttptptptpapaatkeeeKKETEAVVaeeekkpeqpseptkpepeiaaqeeketevieektapevaeaaeddGAKTVEAIEETVVAVsssvpqeqlpqspepkpeakpavtseneskdtktepemgpeEVYIWGIPLLADERSDVILLKFlrardfkvkdaFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLErsirkldfrpggiSTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKpaakhtvefpvteechltWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDsfkivepgkvvltidnptskkkkLLYRLktkpssghqsfkdelcca
MAEEVQKtesqetaaqveevvvqtDHVQPAEKTAMPAVEKEAPVTLPETDEASNKETETPKSSSGDDAESEQKVPESGSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFSakttptptptpapaatkeeekketeavvaeeekkpeqpseptkpepeIAAQeeketevieektAPEVAEAAEDDGAKtveaieetvvavsssvPQEQLPQSPEPKPEAKPAVTSENESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFgiddligqdlgddldKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSkkkkllyrlktkPSSGHQSFKDELCCA
*****************************************************************************************************************************************************************************************************************************************************EVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKN****AKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTI********************************
*****************************************************************************************************************************************************************************************************************************************KDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKL*FRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPST******************E*PVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKPSSGH*SFKDELCC*
**************AQVEEVVVQTDHVQPAEKTAMPAVEKEAPVTLP******************************************LPDNEKKALDELKQVVQEALNKHEF***********************************************************IEEKTAPEVAEAAEDDGAKTVEAIEETVV****************************************GPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLK*********FKDELCCA
**************************************************************************************VGDLPDNEKKALDELKQVVQEALNKH***********************************************************************************************************************ESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKPSSGH**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAEEVQKTESQETAAQVEEVVVQTDHVQPAEKTAMPAVEKEAPVTLPETDEASNKETETPKSSSGDDAESEQKVPESGSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFSAKTTPTPTPTPAPxxxxxxxxxxxxxxxxxxxxxPEQPSEPTKPEPEIAAQEEKETEVIEEKTAPEVAEAAEDDGAKTVEAIEETVVAVSSSVPQEQLPQSPEPKPEAKPAVTSENESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKPSSGHQSFKDELCCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query596 2.2.26 [Sep-21-2011]
Q56Z59490 Patellin-3 OS=Arabidopsis yes no 0.765 0.930 0.566 1e-144
Q9M0R2668 Patellin-5 OS=Arabidopsis no no 0.558 0.498 0.675 1e-143
Q56WK6573 Patellin-1 OS=Arabidopsis no no 0.744 0.774 0.472 1e-120
Q56ZI2683 Patellin-2 OS=Arabidopsis no no 0.609 0.531 0.536 1e-119
Q94C59540 Patellin-4 OS=Arabidopsis no no 0.578 0.638 0.509 1e-106
Q9SCU1409 Patellin-6 OS=Arabidopsis no no 0.546 0.797 0.485 2e-93
Q6C9R9362 Phosphatidylinositol tran yes no 0.375 0.618 0.325 4e-26
A5DEQ9336 Phosphatidylinositol tran N/A no 0.370 0.657 0.330 1e-23
Q75DK1308 SEC14 cytosolic factor OS yes no 0.347 0.672 0.346 1e-20
P24280304 SEC14 cytosolic factor OS yes no 0.369 0.723 0.323 3e-20
>sp|Q56Z59|PATL3_ARATH Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2 Back     alignment and function desciption
 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 272/480 (56%), Positives = 333/480 (69%), Gaps = 24/480 (5%)

Query: 119 TPTPTPTPAPAATKEEEKKETEAV-VAEEEKKPEQPSEPTKPEPEIAAQEEKETEVIEEK 177
           +P+ TP+    +T++    ETE +    E   PE     TKPE E AA+    T V E +
Sbjct: 18  SPSLTPSEVSESTQDALPTETETLEKVTETNPPETADTTTKPEEETAAEHHPPT-VTETE 76

Query: 178 TAPEVAEAAEDDGAKTVEAIEETVVAVSSSVPQEQLPQSPEPKPEAKPAVTSENESKD-- 235
           TA    +  +D+ ++  E  EE      S +PQ  L    E   +      SE +S D  
Sbjct: 77  TASTEKQEVKDEASQK-EVAEEK----KSMIPQ-NLGSFKEESSKLSDLSNSEKKSLDEL 130

Query: 236 --------TKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIR 287
                      +    PEEV IWGIPLL D+RSDV+LLKFLRAR+FKVKD+F MLKNTI+
Sbjct: 131 KHLVREALDNHQFTNTPEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIK 190

Query: 288 WRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQ 347
           WRKEF ID+L+ +DL DDLDK VFMHG D+EGHPVCYNVYGEFQNKELY KTFSDEEKR+
Sbjct: 191 WRKEFKIDELVEEDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRK 250

Query: 348 KFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYP 407
            FLR RIQFLERSIRKLDF  GG+STI QVND+KNSPG  K ELR ATKQA++LLQDNYP
Sbjct: 251 HFLRTRIQFLERSIRKLDFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYP 310

Query: 408 EFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYG 467
           EFV KQ FINVPWWYL    +I PF+T R++SK VFAGPS+SAETL +YI+ EQ+PV+YG
Sbjct: 311 EFVFKQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYG 370

Query: 468 GLSK-----VGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFV 522
           GLS        +F+  D+ +EITVKP  K TVE  + E+C L WE+RV GWEVSY AEFV
Sbjct: 371 GLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFV 430

Query: 523 PSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTSKKKKLLYRLKTKP 582
           P  + +YTV+IQK +K+   +++PV+  SFK+ E GKV+LT+DNPTSKKKKL+YR   KP
Sbjct: 431 PEEKDAYTVVIQKPRKMRP-SDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKP 489
Carrier protein that may be involved in membrane-trafficking events associated with cell plate formation during cytokinesis. Binds to some hydrophobic molecules such as phosphoinositides and promotes their transfer between the different cellular sites.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0R2|PATL5_ARATH Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2 Back     alignment and function description
>sp|Q56WK6|PATL1_ARATH Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2 Back     alignment and function description
>sp|Q56ZI2|PATL2_ARATH Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2 Back     alignment and function description
>sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2 Back     alignment and function description
>sp|Q9SCU1|PATL6_ARATH Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1 Back     alignment and function description
>sp|Q6C9R9|SFH5_YARLI Phosphatidylinositol transfer protein SFH5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SFH5 PE=3 SV=1 Back     alignment and function description
>sp|A5DEQ9|SFH5_PICGU Phosphatidylinositol transfer protein SFH5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SFH5 PE=3 SV=2 Back     alignment and function description
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
255568869606 Patellin-3, putative [Ricinus communis] 0.843 0.830 0.707 0.0
224122762513 predicted protein [Populus trichocarpa] 0.783 0.910 0.709 0.0
356512904539 PREDICTED: patellin-3-like [Glycine max] 0.850 0.940 0.658 0.0
449457287568 PREDICTED: patellin-3-like [Cucumis sati 0.867 0.910 0.624 0.0
356507414557 PREDICTED: patellin-5-like [Glycine max] 0.919 0.983 0.663 0.0
356527226575 PREDICTED: patellin-5-like [Glycine max] 0.818 0.848 0.688 0.0
359480790576 PREDICTED: patellin-5-like [Vitis vinife 0.817 0.845 0.683 0.0
356516429557 PREDICTED: patellin-3-like [Glycine max] 0.909 0.973 0.650 0.0
357520263503 Patellin-5 [Medicago truncatula] gi|3555 0.746 0.884 0.662 0.0
255561582627 Patellin-3, putative [Ricinus communis] 0.852 0.810 0.622 1e-178
>gi|255568869|ref|XP_002525405.1| Patellin-3, putative [Ricinus communis] gi|223535296|gb|EEF36972.1| Patellin-3, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/527 (70%), Positives = 418/527 (79%), Gaps = 24/527 (4%)

Query: 56  ETETPKSSSGDDAESEQKVPESGSFKEESTRVGDLPDNEKKALDELKQVVQEALNKHEFS 115
           +TE  K S G+D    +K+PE  SFKEEST+V DL D+EKKA++EL+Q+VQEALNKHEF 
Sbjct: 75  QTEVLKPSGGND----EKIPEPLSFKEESTKVADLLDSEKKAVEELRQLVQEALNKHEF- 129

Query: 116 AKTTPTPTPTPAPAATKEEEKKETEAVVAEEEKKPEQP----------SEPTKPEPEIAA 165
             T   P+  PA    +E  K + E   A+EE  PE+           +E TK E E   
Sbjct: 130 --TNVNPSVAPAKEEKEEAAKAQEEQKPAQEEPAPEEKLKAEDKVVVEAEETKDEVEKNE 187

Query: 166 Q-EEKETEVIEEKTAPEVAEAAEDDGAKTVEAIEETVVAVSSSVPQEQLPQSPEPKPEAK 224
           + E  +T+V EE       +A +DDGAKTVEAIEET+VAVSSS PQEQ       +PEAK
Sbjct: 188 KIETVQTDVSEENKVVHPCDAMDDDGAKTVEAIEETIVAVSSSAPQEQTLPLVAKEPEAK 247

Query: 225 PAVTS--ENESKDTKTEPEMGPEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTML 282
             V+S  E E+KD    P   PEEV IWGIPLLADERSDVILLKFLRARDFKV+DAFTML
Sbjct: 248 ETVSSTVEEEAKDVIQVP---PEEVSIWGIPLLADERSDVILLKFLRARDFKVRDAFTML 304

Query: 283 KNTIRWRKEFGIDDLIGQDLGDDLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSD 342
           KNTIRWRKEFGID+L+ +DLGDDL K VFMHGFDKE HPVCYNVYGEFQ+KELYQK FSD
Sbjct: 305 KNTIRWRKEFGIDELLEEDLGDDLGKAVFMHGFDKERHPVCYNVYGEFQDKELYQKCFSD 364

Query: 343 EEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLL 402
           EEKR +FL+WRIQFLERSIRKL+F PGGISTIVQVNDLKNSPGP K ELRQATKQALQLL
Sbjct: 365 EEKRNRFLKWRIQFLERSIRKLEFTPGGISTIVQVNDLKNSPGPTKRELRQATKQALQLL 424

Query: 403 QDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQL 462
           QDNYPEFVAKQVFINVPWWYLA N+M+SPFLTQRTRSKFVFAGPSKSAE L RYIAAEQ+
Sbjct: 425 QDNYPEFVAKQVFINVPWWYLAFNKMMSPFLTQRTRSKFVFAGPSKSAEILFRYIAAEQI 484

Query: 463 PVKYGGLSKVGEFAATDAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFV 522
           PVKYGGLSK GEF  TD VTEIT+KPA KHTVEFPV+E C LTWEVRVVGW+V+YGAEFV
Sbjct: 485 PVKYGGLSKDGEFGTTDTVTEITIKPAGKHTVEFPVSEACLLTWEVRVVGWDVNYGAEFV 544

Query: 523 PSTEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 569
           PS E SYTVIIQKA+K+    E+PVVC+SFKI EPGK+VLTIDNPTS
Sbjct: 545 PSAEQSYTVIIQKARKIGVT-EEPVVCNSFKIGEPGKIVLTIDNPTS 590

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122762|ref|XP_002330469.1| predicted protein [Populus trichocarpa] gi|222871881|gb|EEF09012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512904|ref|XP_003525154.1| PREDICTED: patellin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|449457287|ref|XP_004146380.1| PREDICTED: patellin-3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507414|ref|XP_003522462.1| PREDICTED: patellin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|356527226|ref|XP_003532213.1| PREDICTED: patellin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|359480790|ref|XP_002271899.2| PREDICTED: patellin-5-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516429|ref|XP_003526897.1| PREDICTED: patellin-3-like [Glycine max] Back     alignment and taxonomy information
>gi|357520263|ref|XP_003630420.1| Patellin-5 [Medicago truncatula] gi|355524442|gb|AET04896.1| Patellin-5 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255561582|ref|XP_002521801.1| Patellin-3, putative [Ricinus communis] gi|223539014|gb|EEF40611.1| Patellin-3, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query596
TAIR|locus:2207016490 AT1G72160 "AT1G72160" [Arabido 0.545 0.663 0.661 2e-132
TAIR|locus:2141563668 AT4G09160 "AT4G09160" [Arabido 0.536 0.479 0.653 7.4e-122
TAIR|locus:2009502683 PATL2 "PATELLIN 2" [Arabidopsi 0.573 0.500 0.546 5.7e-109
TAIR|locus:2207001573 PATL1 "AT1G72150" [Arabidopsis 0.617 0.642 0.510 2.8e-105
TAIR|locus:2204594540 AT1G30690 [Arabidopsis thalian 0.577 0.637 0.475 2.9e-97
TAIR|locus:2098282409 AT3G51670 "AT3G51670" [Arabido 0.572 0.833 0.450 3.1e-85
DICTYBASE|DDB_G0270022444 DDB_G0270022 "cellular retinal 0.444 0.596 0.306 3.2e-30
SGD|S000004684304 SEC14 "Phosphatidylinositol/ph 0.359 0.703 0.315 1.9e-21
MGI|MGI:1915065403 Sec14l2 "SEC14-like 2 (S. cere 0.359 0.531 0.263 4.1e-16
POMBASE|SPAC3H8.10286 spo20 "sec14 cytosolic factor 0.348 0.727 0.310 6.1e-16
TAIR|locus:2207016 AT1G72160 "AT1G72160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1144 (407.8 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
 Identities = 219/331 (66%), Positives = 258/331 (77%)

Query:   244 PEEVYIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXX 303
             PEEV IWGIPLL D+RSDV+LLKFLRAR+FKVKD+F MLKNTI+WRKEF           
Sbjct:   147 PEEVKIWGIPLLEDDRSDVVLLKFLRAREFKVKDSFAMLKNTIKWRKEFKIDELVEEDLV 206

Query:   304 XXXXKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRK 363
                 K VFMHG D+EGHPVCYNVYGEFQNKELY KTFSDEEKR+ FLR RIQFLERSIRK
Sbjct:   207 DDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRK 266

Query:   364 LDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYL 423
             LDF  GG+STI QVND+KNSPG  K ELR ATKQA++LLQDNYPEFV KQ FINVPWWYL
Sbjct:   267 LDFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYL 326

Query:   424 AVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVG-----EFAAT 478
                 +I PF+T R++SK VFAGPS+SAETL +YI+ EQ+PV+YGGLS        +F+  
Sbjct:   327 VFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLE 386

Query:   479 DAVTEITVKPAAKHTVEFPVTEECHLTWEVRVVGWEVSYGAEFVPSTEGSYTVIIQKAKK 538
             D+ +EITVKP  K TVE  + E+C L WE+RV GWEVSY AEFVP  + +YTV+IQK +K
Sbjct:   387 DSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRK 446

Query:   539 LASNAEQPVVCDSFKIVEPGKVVLTIDNPTS 569
             +  + ++PV+  SFK+ E GKV+LT+DNPTS
Sbjct:   447 MRPS-DEPVLTHSFKVNELGKVLLTVDNPTS 476
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
TAIR|locus:2141563 AT4G09160 "AT4G09160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009502 PATL2 "PATELLIN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207001 PATL1 "AT1G72150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204594 AT1G30690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098282 AT3G51670 "AT3G51670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270022 DDB_G0270022 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004684 SEC14 "Phosphatidylinositol/phosphatidylcholine transfer protein" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1915065 Sec14l2 "SEC14-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPAC3H8.10 spo20 "sec14 cytosolic factor family Sec14" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56Z59PATL3_ARATHNo assigned EC number0.56660.76510.9306yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 9e-41
smart00516158 smart00516, SEC14, Domain in homologues of a S 7e-35
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 3e-32
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 1e-08
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 1e-07
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-07
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-06
TIGR03835871 TIGR03835, termin_org_DnaJ, terminal organelle ass 2e-06
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 3e-05
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 1e-04
PRK05996423 PRK05996, motB, flagellar motor protein MotB; Vali 1e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 1e-04
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 3e-04
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 3e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 5e-04
PRK13108460 PRK13108, PRK13108, prolipoprotein diacylglyceryl 5e-04
pfam09507427 pfam09507, CDC27, DNA polymerase subunit Cdc27 0.001
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 0.002
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 0.002
PRK04335313 PRK04335, PRK04335, cell division protein ZipA; Pr 0.002
PRK13108460 PRK13108, PRK13108, prolipoprotein diacylglyceryl 0.003
pfam11489671 pfam11489, DUF3210, Protein of unknown function (D 0.003
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information 
 Score =  144 bits (366), Expect = 9e-41
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 13/165 (7%)

Query: 305 DLDKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKL 364
           +L K  ++ G DKEG PV     G     +   K+   EE     LR+ +  LE+ +++ 
Sbjct: 6   ELGKVGYLGGRDKEGRPVLIIRAG----NKDLSKSLDSEE----LLRYLVYTLEKLLQED 57

Query: 365 DFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLA 424
           D     +   V + DLK              K+ L++LQDNYPE +     IN PW++  
Sbjct: 58  DE---QVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKV 114

Query: 425 VNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGL 469
           + +++ PFL+++TR K VF G  K  E LL+YI  EQLP +YGG 
Sbjct: 115 LWKIVKPFLSEKTRKKIVFLGSDK--EELLKYIDKEQLPEEYGGT 157

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27 Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional Back     alignment and domain information
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed Back     alignment and domain information
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 596
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.95
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.93
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.89
PF13897136 GOLD_2: Golgi-dynamics membrane-trafficking 99.79
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.42
KOG3878469 consensus Protein involved in maintenance of Golgi 99.29
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.17
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.08
KOG3287236 consensus Membrane trafficking protein, emp24/gp25 96.71
KOG1693209 consensus emp24/gp25L/p24 family of membrane traff 94.47
KOG1692201 consensus Putative cargo transport protein EMP24 ( 93.51
PF01105183 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro 84.81
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-37  Score=323.80  Aligned_cols=241  Identities=32%  Similarity=0.488  Sum_probs=200.1

Q ss_pred             ccccccccCCCCCCCCChHHHH-hcCCCCCCC-CCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCC-ccc
Q 007602          227 VTSENESKDTKTEPEMGPEEVY-IWGIPLLAD-ERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQ-DLG  303 (596)
Q Consensus       227 ~~~~~el~e~~~~~~~~~~~l~-~W~~Pll~~-~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~-~i~  303 (596)
                      ..+..++.+.+....+.+..++ +|++|+++. ..+|.+||||||||+||+++|.+||.+++.||.+++++.|... ...
T Consensus         9 ~~~~~~~~~~~~~~~~~i~~lr~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~   88 (317)
T KOG1471|consen    9 KVAKEELNEITESEEAVIAQLRWLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED   88 (317)
T ss_pred             cccccccCCCcHHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccc
Confidence            3456667777777888899998 779999995 8899999999999999999999999999999999999988765 222


Q ss_pred             ccccc--eeeeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHh-----ccCCCCeEEEEE
Q 007602          304 DDLDK--TVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKL-----DFRPGGISTIVQ  376 (596)
Q Consensus       304 ~el~k--~~~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l-----~~~~~~i~~iv~  376 (596)
                      ..+.+  ...++|.|+.|+||++.+.|..|.++++..+.     ..+++++.+.-+|+.+..+     .....+++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~  163 (317)
T KOG1471|consen   89 DELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTG-----SLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVT  163 (317)
T ss_pred             hhhhhhccccccccCCCCCEEEEeccCCCCcccceeecc-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEE
Confidence            33333  24688999999999999999999999987653     3566666666666654221     122467999999


Q ss_pred             EEeCCCCCCCCcc-hHHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHh
Q 007602          377 VNDLKNSPGPAKW-ELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLR  455 (596)
Q Consensus       377 IiDlkg~sgl~~~-~l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k  455 (596)
                      |+||+|+++.... ..+..++.++.++|+|||++++++||||+|++|+++|++++|||+++|++||+++++ ++.++|++
T Consensus       164 I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~-~~~~~L~k  242 (317)
T KOG1471|consen  164 IFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHS-KDKESLLK  242 (317)
T ss_pred             EEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCC-Cchhhhhh
Confidence            9999998633221 236679999999999999999999999999999999999999999999999994433 58999999


Q ss_pred             hcCcCCccccCCCCCCCC
Q 007602          456 YIAAEQLPVKYGGLSKVG  473 (596)
Q Consensus       456 ~Id~e~LP~eyGG~~~~~  473 (596)
                      +|++++||.+|||++.+.
T Consensus       243 ~i~~~~LP~~yGG~~~~~  260 (317)
T KOG1471|consen  243 YIPPEVLPEEYGGTCGDL  260 (317)
T ss_pred             hCCHhhCccccCCCcccc
Confidence            999999999999999985

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 2e-18
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 3e-15
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 4e-15
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-14
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-14
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 1e-13
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 4e-12
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 1e-10
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 4e-09
3hx3_A316 Crystal Structure Of Cralbp Mutant R234w Length = 3 4e-04
3hy5_A316 Crystal Structure Of Cralbp Length = 316 5e-04
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 104/231 (45%), Gaps = 10/231 (4%)
Query: 261 DVILLKFLRARDFKVKDAFTMLKNTIRWRKEFXXXXXXXXXXXXXXXKTV-----FMHGF 315
           D  LL+FLRAR F V+ A  M +N  +WRK++                       + H  
Sbjct: 52  DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111
Query: 316 DKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGG--IST 373
           DK+G PV +   G     E+ + T   EE+  K L W  + + +       R  G  + T
Sbjct: 112 DKDGRPVYFEELGAVNLHEMNKVT--SEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 169
Query: 374 IVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFL 433
              + DLK     + + +    ++A  + Q+ YPE + K   IN P+ +    R+  PFL
Sbjct: 170 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
Query: 434 TQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKVGEFAATDAVTEI 484
              T SK    G S   E LL+ I AE LPVK+GG S+V E      +++I
Sbjct: 230 DPVTVSKIFILGSSYQKE-LLKQIPAENLPVKFGGKSEVDESKGGLYLSDI 279
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316 Back     alignment and structure
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query596
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 1e-89
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-69
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 1e-67
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 7e-36
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 9e-34
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-09
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-09
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 4e-08
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
 Score =  282 bits (722), Expect = 1e-89
 Identities = 76/374 (20%), Positives = 146/374 (39%), Gaps = 45/374 (12%)

Query: 248 YIWGIPLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDDLD 307
            +  +        D  LL++LRAR F ++ +  ML+  + +RK+  ID++I     + + 
Sbjct: 22  NVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQ 81

Query: 308 KTV--FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLD 365
           + +   M G+D +G PV Y++ G    K L       +      LR +++  E  +++  
Sbjct: 82  QYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECA 136

Query: 366 FR----PGGISTIVQVNDLKN-SPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPW 420
            +       + TI  + D +            +A  + L + ++NYPE + +   +  P 
Sbjct: 137 HQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPK 196

Query: 421 WYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLS---------- 470
            +     +I PFL++ TR K +  G     E LL++I+ +Q+PV+YGG            
Sbjct: 197 LFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCK 255

Query: 471 -------------KVGEFAATDAVTEITVKPAAKHTVEFPVTEE-CHLTWEVRVVGWEVS 516
                         V +         + +   + H VE+ +    C L W+    G +V 
Sbjct: 256 SKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVG 315

Query: 517 YGAEFVP----STEGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--K 570
           +G                  +   ++   N+       +    +PG  VL  DN  S   
Sbjct: 316 FGIFLKTKMGERQRAGEMTEVLPNQRY--NSHLVPEDGTLTCSDPGIYVLRFDNTYSFIH 373

Query: 571 KKKLLYRLKTKPSS 584
            KK+ + ++     
Sbjct: 374 AKKVNFTVEVLLPD 387
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.01
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.79
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
Probab=100.00  E-value=7.8e-64  Score=539.63  Aligned_cols=339  Identities=23%  Similarity=0.412  Sum_probs=282.5

Q ss_pred             CCCCCCChHHHHhc--CC-CCCCCCCCHHHHHHHhHhcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccc-ccc--ee
Q 007602          237 KTEPEMGPEEVYIW--GI-PLLADERSDVILLKFLRARDFKVKDAFTMLKNTIRWRKEFGIDDLIGQDLGDD-LDK--TV  310 (596)
Q Consensus       237 ~~~~~~~~~~l~~W--~~-Pll~~~~tD~~LLRFLRArkfdVekA~~~L~~~l~wRk~~~id~i~~~~i~~e-l~k--~~  310 (596)
                      .....+.+.+|+.|  .+ |+++ ..+|.+||||||||+||+++|.+||++++.||+.++++.++. +..++ +..  ..
T Consensus         9 ~~~q~~~l~~lr~~l~~~~~~l~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~   86 (403)
T 1olm_A            9 SPRQKEALAKFRENVQDVLPALP-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSG   86 (403)
T ss_dssp             CHHHHHHHHHHHHHHGGGGGGSS-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCB
T ss_pred             CHHHHHHHHHHHHHHHhhccCCC-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCc
Confidence            33345679999999  33 4555 578999999999999999999999999999999999887765 22222 221  13


Q ss_pred             eeeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeEEEEEEEeCCCCCCC
Q 007602          311 FMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFR----PGGISTIVQVNDLKNSPGP  386 (596)
Q Consensus       311 ~~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~iv~IiDlkg~sgl  386 (596)
                      +++|+|++||||+|+++|++|++++++..     ...+++|++++++|.+++.+..+    +.++.++++|+||+|++ +
T Consensus        87 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s-l  160 (403)
T 1olm_A           87 GMCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-L  160 (403)
T ss_dssp             EEEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-G
T ss_pred             eeeccCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCC-H
Confidence            46899999999999999999999886643     35899999999999998766532    33578999999999885 4


Q ss_pred             Ccc-h-HHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCccc
Q 007602          387 AKW-E-LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPV  464 (596)
Q Consensus       387 ~~~-~-l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~  464 (596)
                      .+. . ...+++.++.++|+|||+||+++||||+||+|.++|++++|||+++|++||+|+++ ++.+.|++|||+++||.
T Consensus       161 ~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~  239 (403)
T 1olm_A          161 KHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPV  239 (403)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBG
T ss_pred             HHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCch
Confidence            332 1 35678999999999999999999999999999999999999999999999999986 57889999999999999


Q ss_pred             cCCCCCCCCC------------------CccC----ccc-cccccCCCCceEEEEeeC-CCceeeeEEEEeeceeeeeeE
Q 007602          465 KYGGLSKVGE------------------FAAT----DAV-TEITVKPAAKHTVEFPVT-EECHLTWEVRVVGWEVSYGAE  520 (596)
Q Consensus       465 eyGG~~~~~d------------------f~~~----d~~-~~v~Vk~gs~~~Vei~V~-egs~L~WeF~v~~~DI~FgV~  520 (596)
                      +|||++.+.+                  |+..    +.. +.++|++|++++|.|++. +|++|.|+|+|+++||+|||+
T Consensus       240 ~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~  319 (403)
T 1olm_A          240 EYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIF  319 (403)
T ss_dssp             GGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEE
T ss_pred             hhCCCcCCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEE
Confidence            9999998653                  1111    223 459999999999999998 699999999999999999999


Q ss_pred             eccCC----CCCceEEEecceeccCCCCCCcccceEEeCcCcEEEEEEECCCC--CCceEEEEEEEccCCCc
Q 007602          521 FVPST----EGSYTVIIQKAKKLASNAEQPVVCDSFKIVEPGKVVLTIDNPTS--KKKKLLYRLKTKPSSGH  586 (596)
Q Consensus       521 f~~~~----~~~~~~iV~~~~kv~s~~~~p~~~Gs~~~~epG~yvL~fDNs~S--~sKkl~Y~i~v~~ps~~  586 (596)
                      |.+..    +++....|.+..|+.+| ..+ ++|+|+|.+||+|+|+|||+||  ++|+|+|++.+.+|+..
T Consensus       320 ~~~~~~~~~~~~~~~~v~p~~r~~~~-~~~-~~G~~~~~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~~~  389 (403)
T 1olm_A          320 LKTKMGERQRAGEMTEVLPNQRYNSH-LVP-EDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKA  389 (403)
T ss_dssp             EC----CCCCGGGSEEEEEEEEECTT-TSC-EEEEEECCSCEEEEEEEECTTCCCCSEEEEEEEEEECCCHH
T ss_pred             EecccccccCCCcceEEeeeeeecCc-ccc-ccCEEEcCCCeEEEEEEeccccceeceEEEEEEEEeCCccc
Confidence            98532    21334555567999999 776 8999999999999999999999  99999999999988754
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 596
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 2e-38
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 7e-38
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-22
d1olma2119 b.132.1.1 (A:275-393) Supernatant protein factor ( 6e-17
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 6e-15
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-12
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 1e-11
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  138 bits (348), Expect = 2e-38
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 11/165 (6%)

Query: 312 MHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFR---- 367
           M G+D +G PV Y++ G    K L       +      LR +++  E  +++   +    
Sbjct: 13  MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQD-----LLRTKMRECELLLQECAHQTTKL 67

Query: 368 PGGISTIVQVNDLKN-SPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVN 426
              + TI  + D +            +A  + L + ++NYPE + +   +  P  +    
Sbjct: 68  GRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY 127

Query: 427 RMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSK 471
            +I PFL++ TR K +  G +   E LL++I+ +Q+PV+YGG   
Sbjct: 128 NLIKPFLSEDTRKKIMVLG-ANWKEVLLKHISPDQVPVEYGGTMT 171
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query596
d1olma3199 Supernatant protein factor (SPF), middle domain {H 99.97
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.96
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.94
d1olma2119 Supernatant protein factor (SPF), C-terminal domai 99.89
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.23
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.18
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.04
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-31  Score=259.46  Aligned_cols=156  Identities=27%  Similarity=0.467  Sum_probs=137.4

Q ss_pred             eeccCCCCCeEEEEEcCCcChhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCeEEEEEEEeCCCCCCCC
Q 007602          312 MHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFR----PGGISTIVQVNDLKNSPGPA  387 (596)
Q Consensus       312 ~~G~Dk~GrPVi~~~~g~~d~~~l~~~t~sd~e~~~~~lr~~i~llE~~l~~l~~~----~~~i~~iv~IiDlkg~sgl~  387 (596)
                      +||+|++||||+|+++|++|++++++..     ..++++++.++.+|.+++.+..+    +.+++++++|+||+|++ ++
T Consensus        13 ~~G~Dk~Grpv~~~r~g~~d~~~l~~~~-----~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s-~~   86 (199)
T d1olma3          13 MCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLG-LK   86 (199)
T ss_dssp             EEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCC-GG
T ss_pred             cccCCCCCCEEEEEecccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCc-hh
Confidence            7899999999999999999999987643     25789999999999998765432    45678999999999875 43


Q ss_pred             cch--HHHHHHHHHHHhhhccccccceEEEEeCChhHHHHHHhhcccCChhhhccEEEeCCCcchHHHHhhcCcCCcccc
Q 007602          388 KWE--LRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTRSKFVFAGPSKSAETLLRYIAAEQLPVK  465 (596)
Q Consensus       388 ~~~--l~~~lk~il~llq~~YPErL~~I~IINaP~~f~~iw~lVkpfLsektr~KI~~~~~~~~~e~L~k~Id~e~LP~e  465 (596)
                      +..  ..++++.++.++|++||+|++++||||+||+|+++|+++++||+++|++||+|+++ ++.+.|.++|++++||.+
T Consensus        87 ~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~-~~~~~L~~~i~~~~lP~~  165 (199)
T d1olma3          87 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVE  165 (199)
T ss_dssp             GGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGG
T ss_pred             hhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCC-CCHHHHHHhCCHhhCCHH
Confidence            321  25779999999999999999999999999999999999999999999999999985 578899999999999999


Q ss_pred             CCCCCCCCC
Q 007602          466 YGGLSKVGE  474 (596)
Q Consensus       466 yGG~~~~~d  474 (596)
                      |||+|++++
T Consensus       166 yGGt~~~~~  174 (199)
T d1olma3         166 YGGTMTDPD  174 (199)
T ss_dssp             GTSSBCCTT
T ss_pred             hCCCCCCCC
Confidence            999998864
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure