Citrus Sinensis ID: 007605

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------

MMVTRTTTHHFAGVSCLTAPSSNQRRINSNIYCKKHTVVTNGDRTVTAEERPKLNLKGNSGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

ccEEccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEEEccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEEccEEEcHHHHHHccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEcccccccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccEEEEEEEccccccccEEEEccccccccccEEEEEcccEEEEEEccccccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEcccccccccccccccHHHHHHHHcc

cccEccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccccccEEEEcccccccEEEEccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEEEcccccEEEEEccccccEEccEEcccccccccccccccccccccEEEEEcccccccEEEEEEEccccccccccccccccccccccEEEcccEEEEccccEEEcHHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccEEEEEEEcccccccccccccccccHHccccEEEEEEEEcccccEEEEEccccccccccEcccHcccccEEEEEEEEcccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccccEEEcccccccccccccEEEEEEEEccccccEEEEEEccccccccEEEEEccccccccccEEEEcHHHHHHHHcc

mmvtrttthhfagvscltapssnqrrinsniyckkhtvvtngdrtvtaeerpklnlkgnsgdsgivavnpkpqkglaAKVIDFVEGLIVKFmhdssrplhylsgnfgpvrhetpptadlpviGFLHEclngefirvgpnskfapvagyhwfdgdgmlhglrikdgkAAYVSRYVKTSRLkqeeffggakftkigdvKGLFGLLMVNMTLLRESFKVLdfsygngagntaLIYHHGKLLvlseidkpyvlkvlkdgdlqtlgmldydkrlnhpftahpkidpytdemftfgytqtppyvtyrviskdgfmhdpvpitmsapimmhdfaITENYAIfldlpmcfrQKEMVKEnkliyafdptikarfgvlpryarddlqirwfelpncyifhnanaweeeEDEVVLITCrvrnpdldmfngplketleDQTTELYEMRFNMktglasqkklspacvdfprinehymgrkqryVYGSILENIAKVTGMIKfdlraepetgktklevggnvkgifdlgpgrfgseavfvprepsstseeddgylIFHVHDENTGKSAVYVIDAktmsadpvavielphrvpygfhgiFLSEEQLEELAKL

mmvtrttthhfagvscltapssnqrrinsniyckkhtvvtngdrtvtaeerpklnlkgnsgdsgivaVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTsrlkqeeffggakftkigdVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRnpdldmfngplketleDQTTELYEMRFNMKTglasqkklspACVDFPRINehymgrkqryvyGSILENIAKVTGMIKFDLRAEPetgktklevggnvKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

*********HFAGVSCLT*******RINSNIYCKKHTVVTNG*******************************KGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNA*********VVLITCRVRNPDLDMFNGPLKETL**QTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFV************GYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLS**********

***************************************************************************LAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE*AK*

*********HFAGVSCLTAPSSNQRRINSNIYCKKHTVVTNGDRTVTAEERPKLNLKGNSGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVP*********DDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL

*****************************************************************VAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		596	2.2.26 [Sep-21-2011]
O65572		538	Carotenoid 9,10(9',10')-c	yes	no	0.887	0.983	0.761	0.0
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.902	0.990	0.738	0.0
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.882	0.963	0.759	0.0
Q8LP17		541	Carotenoid 9,10(9',10')-c	N/A	no	0.890	0.981	0.733	0.0
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.830	0.819	0.372	2e-93
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.837	0.759	0.388	2e-92
O49675		595	Probable carotenoid cleav	no	no	0.916	0.917	0.360	1e-90
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.830	0.840	0.362	2e-90
Q9LRR7		599	9-cis-epoxycarotenoid dio	no	no	0.895	0.891	0.337	1e-87
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.837	0.811	0.345	8e-87

>sp\|O65572\|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2	Back alignment and function desciption

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/533 (76%), Positives = 462/533 (86%), Gaps = 4/533 (0%)

Query: 60  SGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADL 119
           S  S I++V+P+P KG ++K++D +E L+VK MHD+S PLHYLSGNF P+R ETPP  DL
Sbjct: 6   SDGSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDL 65

Query: 120 PVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRL 179
           PV GFL ECLNGEF+RVGPN KF  VAGYHWFDGDGM+HG+RIKDGKA YVSRYVKTSRL
Sbjct: 66  PVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRL 125

Query: 180 KQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLV 239
           KQEEFFG AKF KIGD+KG FGLLMVN+  LR   K+LD +YGNG  NTAL+YHHGKLL 
Sbjct: 126 KQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLA 185

Query: 240 LSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVT 299
           L E DKPYV+KVL+DGDLQTLG++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+T
Sbjct: 186 LQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLT 245

Query: 300 YRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDP 359
           YRVISKDG MHDPVPIT+S PIMMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDP
Sbjct: 246 YRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDP 305

Query: 360 TIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNG 419
           T KARFGVLPRYA+D+L IRWFELPNC+IFHNANAW EEEDEVVLITCR+ NPDLDM +G
Sbjct: 306 TKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDMVSG 364

Query: 420 PLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENI 479
            +KE LE+   ELYEMRFNMKTG ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++I
Sbjct: 365 KVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSI 424

Query: 480 AKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGY 539
           AKVTG+IKFDL AE ETGK  LEVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGY
Sbjct: 425 AKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGY 481

Query: 540 LIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE 592
           LIF VHDENTGKS V VIDAKTMSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct: 482 LIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

Cleaves a variety of carotenoids symmetrically at both the 9-10 and 9'-10' double bonds. Active on beta,beta-carotene, lutein, zeaxanthin, all-trans-violaxanthin, 9-cis-violaxanthin and 9'-cis-neoxanthin. With most substrates, the carotenoid is symmetrically cleaved. Probably not involved in abscisic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: nEC: 4

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

>sp\|Q8LP17\|CCD1_PEA Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		596
61654494		542	9,10[9',10']carotenoid cleavage dioxygen	0.904	0.994	0.768	0.0
225450111		546	PREDICTED: carotenoid 9,10(9',10')-cleav	0.911	0.994	0.762	0.0
387763758		546	carotenoid cleavage dioxygenase 1 [Vitis	0.911	0.994	0.761	0.0
387763764		546	carotenoid cleavage dioxygenase 1 [Vitis	0.911	0.994	0.761	0.0
408794951		547	carotenoid cleavage dioxygenase 1 [Momor	0.916	0.998	0.755	0.0
134285450		548	9-cis-epoxycarotenoid dioxygenase [Casta	0.917	0.998	0.772	0.0
387763760		546	carotenoid cleavage dioxygenase 1 [Vitis	0.911	0.994	0.759	0.0
307592509		552	carotenoid cleavage dioxygenase 1 [Manih	0.919	0.992	0.759	0.0
225450105		552	PREDICTED: carotenoid 9,10(9',10')-cleav	0.911	0.983	0.754	0.0
90991006		523	carotenoid cleavage dioxygenase1 [Citrus	0.870	0.992	0.796	0.0

>gi\|61654494\|gb\|AAX48772.1\| 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera]	Back alignment and taxonomy information

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/540 (76%), Positives = 474/540 (87%), Gaps = 1/540 (0%)

Query: 57  KGNSGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPT 116
           K   G +G+V V+PKP KG  +K +D++E LIVK MHDSS+PLHYLSGNF PVR ETPP 
Sbjct: 4   KEEQGGAGVVVVDPKPSKGFTSKAVDWLEKLIVKLMHDSSQPLHYLSGNFAPVRDETPPC 63

Query: 117 ADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKT 176
            +LPVIG+L ECLNGEF+RVGPN KF+PVAGYHWFDGDGM+HGL IKDGKA YVSRYV+T
Sbjct: 64  KNLPVIGYLPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLHIKDGKATYVSRYVRT 123

Query: 177 SRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGK 236
           SRLKQEE+FGGAKF +IGD+KGLFGLLMVNM +LR   K+LD SYG G GNTAL++HHGK
Sbjct: 124 SRLKQEEYFGGAKFMRIGDLKGLFGLLMVNMQMLRAKLKILDVSYGTGTGNTALVFHHGK 183

Query: 237 LLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPP 296
           LL LSE DKPYVLKVL+DGDLQTLGMLDYDKRL H FTAHPK+DP+T EMF+FGY+ TPP
Sbjct: 184 LLALSEADKPYVLKVLEDGDLQTLGMLDYDKRLTHSFTAHPKVDPFTGEMFSFGYSHTPP 243

Query: 297 YVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYA 356
           Y+TYRVISKDGFMH+PVPIT+S PIMMHDFAITENYAIF+DLP+ FR KEMVKE KLI+ 
Sbjct: 244 YITYRVISKDGFMHEPVPITISDPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKLIFT 303

Query: 357 FDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDM 416
           FD T KARFGVLPRYA+++L I+WFELPNC+IFHNANAW EEEDEVVLITCR+ NPDLD+
Sbjct: 304 FDATKKARFGVLPRYAKNELHIKWFELPNCFIFHNANAW-EEEDEVVLITCRLENPDLDL 362

Query: 417 FNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSIL 476
             G +KE LE+   ELYEMRFNMKTG+ASQ+KLS + VDFPR+NE Y GRKQRYVYG+IL
Sbjct: 363 VGGDVKEKLENFGNELYEMRFNMKTGIASQRKLSASSVDFPRVNESYTGRKQRYVYGTIL 422

Query: 477 ENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEED 536
           ++IAKVTG+IKFDL AEP+TGK+KLEVGGNV+GIFDLG GRFGSEAVFVPREP  TSEED
Sbjct: 423 DSIAKVTGIIKFDLHAEPDTGKSKLEVGGNVQGIFDLGVGRFGSEAVFVPREPGITSEED 482

Query: 537 DGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL 596
           DGYLIF VHDE TGKS V VIDAKTMS DP+A++ELP+RVPYGFH  F++EEQL+E AKL
Sbjct: 483 DGYLIFFVHDEKTGKSYVNVIDAKTMSPDPIAIVELPNRVPYGFHAFFVTEEQLKEQAKL 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi\|225450111\|ref\|XP_002278750.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Vitis vinifera] gi\|297736256\|emb\|CBI24894.3\| unnamed protein product [Vitis vinifera] gi\|387763762\|gb\|AFJ94679.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera] gi\|387763766\|gb\|AFJ94681.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763758\|gb\|AFJ94677.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|387763764\|gb\|AFJ94680.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|408794951\|gb\|AFU91489.1\| carotenoid cleavage dioxygenase 1 [Momordica charantia]	Back alignment and taxonomy information

>gi\|134285450\|gb\|ABO69703.1\| 9-cis-epoxycarotenoid dioxygenase [Castanea mollissima]	Back alignment and taxonomy information

>gi\|387763760\|gb\|AFJ94678.1\| carotenoid cleavage dioxygenase 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|307592509\|gb\|ADN65332.1\| carotenoid cleavage dioxygenase 1 [Manihot esculenta]	Back alignment and taxonomy information

>gi\|225450105\|ref\|XP_002278628.1\| PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|90991006\|dbj\|BAE92957.1\| carotenoid cleavage dioxygenase1 [Citrus unshiu] gi\|90991010\|dbj\|BAE92959.1\| carotenoid cleavage dioxygenase1 [Citrus limon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		596
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.887	0.983	0.761	1.6e-228
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.914	0.915	0.366	2.3e-87
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.827	0.837	0.370	1.1e-85
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.823	0.819	0.348	2e-81
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.837	0.855	0.358	1.4e-78
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.734	0.666	0.380	2.5e-74
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.780	0.805	0.364	1.6e-72
UNIPROTKB\|O06785		501	MT0683 "Carotenoid cleavage ox	0.367	0.437	0.304	1.1e-47
UNIPROTKB\|Q52008		490	lsdB "Lignostilbene-alpha,beta	0.771	0.938	0.286	8.3e-37
ASPGD\|ASPL0000067272		555	AN7062 [Emericella nidulans (t	0.739	0.794	0.266	3.8e-32

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2205 (781.3 bits), Expect = 1.6e-228, P = 1.6e-228
 Identities = 406/533 (76%), Positives = 462/533 (86%)

Query:    60 SGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADL 119
             S  S I++V+P+P KG ++K++D +E L+VK MHD+S PLHYLSGNF P+R ETPP  DL
Sbjct:     6 SDGSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDL 65

Query:   120 PVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRL 179
             PV GFL ECLNGEF+RVGPN KF  VAGYHWFDGDGM+HG+RIKDGKA YVSRYVKTSRL
Sbjct:    66 PVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRL 125

Query:   180 KQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLV 239
             KQEEFFG AKF KIGD+KG FGLLMVN+  LR   K+LD +YGNG  NTAL+YHHGKLL 
Sbjct:   126 KQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLA 185

Query:   240 LSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVT 299
             L E DKPYV+KVL+DGDLQTLG++DYDKRL H FTAHPK+DP T EMFTFGY+ TPPY+T
Sbjct:   186 LQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLT 245

Query:   300 YRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDP 359
             YRVISKDG MHDPVPIT+S PIMMHDFAITE YAIF+DLPM FR KEMVKE K+IY+FDP
Sbjct:   246 YRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDP 305

Query:   360 TIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNG 419
             T KARFGVLPRYA+D+L IRWFELPNC+IFHNANAWEEE DEVVLITCR+ NPDLDM +G
Sbjct:   306 TKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVSG 364

Query:   420 PLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVYGSILENI 479
              +KE LE+   ELYEMRFNMKTG ASQKKLS + VDFPRINE Y G+KQRYVYG+IL++I
Sbjct:   365 KVKEKLENFGNELYEMRFNMKTGSASQKKLSASAVDFPRINECYTGKKQRYVYGTILDSI 424

Query:   480 AKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGY 539
             AKVTG+IKFDL AE ETGK  LEVGGN+KGI+DLG GR+GSEA++VPRE   T+EEDDGY
Sbjct:   425 AKVTGIIKFDLHAEAETGKRMLEVGGNIKGIYDLGEGRYGSEAIYVPRE---TAEEDDGY 481

Query:   540 LIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE 592
             LIF VHDENTGKS V VIDAKTMSA+PVAV+ELPHRVPYGFH +F++EEQL+E
Sbjct:   482 LIFFVHDENTGKSCVTVIDAKTMSAEPVAVVELPHRVPYGFHALFVTEEQLQE 534

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0016118 "carotenoid catabolic process" evidence=IDA

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016121 "carotene catabolic process" evidence=IMP

GO:0016124 "xanthophyll catabolic process" evidence=IMP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|Q52008 lsdB "Lignostilbene-alpha,beta-dioxygenase isozyme III" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000067272 AN7062 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84KG5	CCD_CROSA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7590	0.8825	0.9633	N/A	no
Q8LP17	CCD1_PEA	1, ., 1, 4, ., 9, 9, ., n, 4	0.7330	0.8909	0.9815	N/A	no
O65572	CCD1_ARATH	1, ., 1, 4, ., 9, 9, ., n, 4	0.7617	0.8875	0.9832	yes	no
Q94IR2	CCD1_PHAVU	1, ., 1, 4, ., 9, 9, ., n, 4	0.7388	0.9026	0.9907	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.14.99.n4	0.991
3rd Layer	1.14.99	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		596
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-157
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	1e-152
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	1e-108
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	8e-13

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

 Score = 1000 bits (2586), Expect = 0.0
 Identities = 434/544 (79%), Positives = 476/544 (87%), Gaps = 1/544 (0%)

Query: 53  KLNLKGNSGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHE 112
           K+   G  G S +V VNP+P KGL +K +D +E LIVK MHD+S+PLHYLSGNF PVR E
Sbjct: 3   KMQESGVQGGSPVVVVNPRPSKGLTSKAVDLLEKLIVKLMHDASQPLHYLSGNFAPVRDE 62

Query: 113 TPPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSR 172
           TPP  DLPV G L ECLNGEF+RVGPN KF+PVAGYHWFDGDGM+HG+RIKDGKA YVSR
Sbjct: 63  TPPVKDLPVRGHLPECLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGMRIKDGKATYVSR 122

Query: 173 YVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIY 232
           YVKTSRLKQEEFFGGAKF KIGD+KGLFGLLMVNM  LR   KVLDFSYGNG GNTALIY
Sbjct: 123 YVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIY 182

Query: 233 HHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYT 292
           HHGKLL LSE DKPYV+KVL+DGDLQTLG+LDYDKRL H FTAHPK+DP+T EMFTFGY+
Sbjct: 183 HHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYS 242

Query: 293 QTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENK 352
             PPY+TYRVISKDG MHDPVPIT+S PIMMHDFAITENYAIF+DLP+ FR KEMVKE K
Sbjct: 243 HEPPYITYRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKK 302

Query: 353 LIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNP 412
            IY FD T KARFGVLPRYA+D+L IRWFELPNC+IFHNANAW EEEDEVVLITCR+ NP
Sbjct: 303 FIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW-EEEDEVVLITCRLENP 361

Query: 413 DLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRINEHYMGRKQRYVY 472
           DLDM NG +KE LE+   ELYEMRFNMKTG ASQKKLS + VDFPR+NE Y GRKQRYVY
Sbjct: 362 DLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRVNESYTGRKQRYVY 421

Query: 473 GSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSST 532
           G+IL++IAKVTG+IKFDL AEPETGK KLEVGGNVKGIFDLGPGRFGSEA+FVPREP +T
Sbjct: 422 GTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTT 481

Query: 533 SEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEE 592
           SEEDDGYLIF VHDENTGKS+V VIDAKTMSADPVAV+ELPHRVPYGFH  F++EEQL+E
Sbjct: 482 SEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQE 541

Query: 593 LAKL 596
            AKL
Sbjct: 542 QAKL 545

Length = 545

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		596
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.97

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

Probab=100.00  E-value=2e-142  Score=1185.91  Aligned_cols=536  Identities=81%  Similarity=1.337  Sum_probs=491.9

Q ss_pred             cCCCCeEEeccCCCcchHHHHHHHHHHhhhhcccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCC
Q 007605           60 SGDSGIVAVNPKPQKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPN  139 (596)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPn  139 (596)
                      ...+.++++.+++.|+++++++|++|++|++.+++++||+++|+|||+|+.+|.++..+++|+|+||+||+|+|||||||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPn   89 (545)
T PLN02491         10 QGGSPVVVVNPRPSKGLTSKAVDLLEKLIVKLMHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPN   89 (545)
T ss_pred             cCCcceeeccCchhhhhhHHHHHHHHHHHHhhccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCC
Confidence            34455889999999999999999999999999999999999999999999878776788999999999999999999999


Q ss_pred             CCCCCCCccccccCCCcEEEEEEeCCcEEEEEEEeechhhHHHHHhCCceeeecCCCCChhhhHHHHHHHHhhhcccccc
Q 007605          140 SKFAPVAGYHWFDGDGMLHGLRIKDGKAAYVSRYVKTSRLKQEEFFGGAKFTKIGDVKGLFGLLMVNMTLLRESFKVLDF  219 (596)
Q Consensus       140 p~~~~~~~~H~FDGdGMlh~~~f~~G~a~y~~RfVrT~~~~~E~~aG~~~~~~~g~~~g~~g~~~~~~~~~r~~~g~~d~  219 (596)
                      |+|.+...+||||||||||+|+|++|+|+|+||||||++|++|+++|+++|++++.++|++|.++..+..+|..++..+.
T Consensus        90 p~~~~~~~~H~FDGDGMlha~~f~~G~a~y~~RfVrT~~~~~E~~ag~~~~~~~~~~~g~~g~~~~~~~~~r~~~~~~~~  169 (545)
T PLN02491         90 PKFSPVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQQLRAKLKVLDF  169 (545)
T ss_pred             CCCCCCCCCccccCCccEEEEEEcCCcEEEEeeeecccchhhhhhcCcccccccccccccchhhhhhhhhhhcccccccc
Confidence            99989888999999999999999999999999999999999999999999999999999999988888888877666665


Q ss_pred             CCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCCCCeEE
Q 007605          220 SYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTPPYVT  299 (596)
Q Consensus       220 ~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~~p~l~  299 (596)
                      ..++|+|||+|++|+||||||||+|+||++++.+++||||+|++||+|+|..+||||||+||+|||||+|+|+..+||++
T Consensus       170 ~~~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~~~p~~~  249 (545)
T PLN02491        170 SYGNGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYIT  249 (545)
T ss_pred             ccCCCCCceeEEEECCEEEEEEcCCCCeEecCCCCCCcceeeecccCCccCcccccCccCcCCCCCEEEEEecCCCCcEE
Confidence            55679999999999999999999999999998777899999999999999999999999999999999999998789999


Q ss_pred             EEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCcceE
Q 007605          300 YRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDLQIR  379 (596)
Q Consensus       300 y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~~v~  379 (596)
                      |+++|++|++.+.++|+++.|+|||||||||||+||+++|+++++.+|++++..++.|||++++|||||||++++.++++
T Consensus       250 y~~~~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~ir  329 (545)
T PLN02491        250 YRVISKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIR  329 (545)
T ss_pred             EEEECCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceE
Confidence            99999999999999999999999999999999999999999999999998777889999999999999999987667899


Q ss_pred             EEEcCceeeeecccccccCCCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEEeeCCCCCCCCcc
Q 007605          380 WFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPACVDFPRI  459 (596)
Q Consensus       380 wfe~p~~f~fH~~NA~Ee~~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~~L~~~~~EfP~I  459 (596)
                      ||++|+||+||++|||||+ |+||+|+|++++++++...+...+..+...++|+||||||+||+++++.|++.++|||+|
T Consensus       330 w~e~~~~f~fH~~NA~Ee~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~~~~~EfP~I  408 (545)
T PLN02491        330 WFELPNCFIFHNANAWEEE-DEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLSASAVDFPRV  408 (545)
T ss_pred             EEEcCCceEeecCCccccC-CeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccCCcccccCcc
Confidence            9999999999999999987 899999999988776554444333344567899999999999999999999999999999


Q ss_pred             CCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCCCCCCCCcE
Q 007605          460 NEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSEEDDGY  539 (596)
Q Consensus       460 n~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~~~~EDDGy  539 (596)
                      |++|.||||||+|+++.++++++++|+|+|+++++++|+.+.+++++..+.|++|+|+|+|||+||||+++.+++|||||
T Consensus       409 n~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~  488 (545)
T PLN02491        409 NESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGY  488 (545)
T ss_pred             CHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcE
Confidence            99999999999999998888889999999999754445544334555667899999999999999999864225899999


Q ss_pred             EEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhhcC
Q 007605          540 LIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELAKL  596 (596)
Q Consensus       540 LLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~~~  596 (596)
                      ||++|||+++++|+|+||||++|+++|||||+||+||||||||+|++++||++|+.+
T Consensus       489 ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~~~  545 (545)
T PLN02491        489 LIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQAKL  545 (545)
T ss_pred             EEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999653

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		596
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		2e-94
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		2e-32
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		3e-05

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 342 bits (878), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 198/532 (37%), Positives = 300/532 (56%), Gaps = 37/532 (6%) Query: 73 QKGLAAKVIDFVEGLIVKFMHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGE 132 ++G A V++ GL ++ P ++GNF PV E PP +LPV G + ++G Sbjct: 24 EEGFVANVLERPHGL-----PSTADPAVQIAGNFAPV-GERPPVHELPVSGRIPPFIDGV 77 Query: 133 FIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFT 191 + R G N F PVAG+H FDGDGM+H LRI++G A +Y R+ +T+RL+QE G F Sbjct: 78 YARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFP 137 Query: 192 K-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLK 250 K IG++ G G+ + + R + ++D S G G N L+Y +G+LL +SE D PY ++ Sbjct: 138 KAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVR 197 Query: 251 VLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQTP-PYVTYRVISKDGFM 309 V DGDL+T+G D+D +L AHPK+DP T E+ Y PY+ Y DG Sbjct: 198 VADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTK 257 Query: 310 HDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLP 369 D V I + P M+HDFAITEN + D + F+ +EM++ + D +RFGVLP Sbjct: 258 SDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPV-VLDAAKTSRFGVLP 316 Query: 370 RYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVRNPDLDMFNGPLKETLEDQT 429 ++A D ++ W ++P+C+ FH NAWE+E V++ P +FN E+ E Sbjct: 317 KHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFN----ESDERLE 372 Query: 430 TELYEMRFNMKTGLASQKKLSPAC----VDFPRINEHYMGRKQRYVYGSILENIAKVTGM 485 + L E+R + +TG ++++ + P ++ +N + +GR+ RY Y ++ E KV+G Sbjct: 373 SVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGF 432 Query: 486 IKFDLRAEPETGK-TKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSSTSE--EDDGYLIF 542 K DL TG+ TK F+ G GRFG E FVP +P++ EDDGY++ Sbjct: 433 AKVDL----STGELTK----------FEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLT 478 Query: 543 HVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA 594 VHDE G S + V++A M + A ++LP RVP+GFHG F++ ++LE A Sbjct: 479 FVHDERAGTSELLVVNAADMRLE--ATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		596
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	1e-169
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-152
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-124
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  489 bits (1261), Expect = e-169
 Identities = 197/550 (35%), Positives = 298/550 (54%), Gaps = 39/550 (7%)

Query: 61  GDSGIVAVNPKPQKGLAAKVID-FVEGLIVKF------MHDSSRPLHYLSGNFGPVRHET 113
            + G   +N   +   AA  +D F EG +         +  ++ P   ++GNF PV    
Sbjct: 2   AEGGKKQLNLFQR--AAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGER- 58

Query: 114 PPTADLPVIGFLHECLNGEFIRVGPNSKFAPVAGYHWFDGDGMLHGLRIKDGKA-AYVSR 172
           PP  +LPV G +   ++G + R G N  F PVAG+H FDGDGM+H LRI++G A +Y  R
Sbjct: 59  PPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACR 118

Query: 173 YVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVLDFSYGNGAGNTALI 231
           + +T+RL+QE   G   F K IG++ G  G+  + +   R +  ++D S G G  N  L+
Sbjct: 119 FTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLV 178

Query: 232 YHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGY 291
           Y +G+LL +SE D PY ++V  DGDL+T+G  D+D +L     AHPK+DP T E+    Y
Sbjct: 179 YFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSY 238

Query: 292 -TQTPPYVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKE 350
                PY+ Y     DG   D V I +  P M+HDFAITEN  +  D  + F+ +EM++ 
Sbjct: 239 DVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR- 297

Query: 351 NKLIYAFDPTIKARFGVLPRYARDDLQIRWFELPNCYIFHNANAWEEEEDEVVLITCRVR 410
                  D    +RFGVLP++A D  ++ W ++P+C+ FH  NAWE+E    V++     
Sbjct: 298 GGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCM 357

Query: 411 NPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSPA----CVDFPRINEHYMGR 466
            P   +FN       E   + L E+R + +TG ++++ + P      ++   +N + +GR
Sbjct: 358 TPADSIFNES----DERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGR 413

Query: 467 KQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVP 526
           + RY Y ++ E   KV+G  K DL     TG+            F+ G GRFG E  FVP
Sbjct: 414 ETRYAYLAVAEPWPKVSGFAKVDL----STGELT---------KFEYGEGRFGGEPCFVP 460

Query: 527 REPSSTS--EEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIF 584
            +P++     EDDGY++  VHDE  G S + V++A  M     A ++LP RVP+GFHG F
Sbjct: 461 MDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTF 518

Query: 585 LSEEQLEELA 594
           ++ ++LE  A
Sbjct: 519 ITGQELEAQA 528

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		596
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=2.3e-133  Score=1112.46  Aligned_cols=506  Identities=39%  Similarity=0.714  Sum_probs=460.1

Q ss_pred             EeccCCCcchHHHHHHHHHHhhhhc-------ccCCCCCCcccccCCccccccCCCCCCceEeeecCCCCceEEEeecCC
Q 007605           67 AVNPKPQKGLAAKVIDFVEGLIVKF-------MHDSSRPLHYLSGNFGPVRHETPPTADLPVIGFLHECLNGEFIRVGPN  139 (596)
Q Consensus        67 ~~~~~~~~~~~~~~~d~~~~~~~~~-------~~~~~~p~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~G~~~RNGPn  139 (596)
                      +.+++|.|++++++||++|++|++.       +++++||+.+|+|||+||. |+++..+++|+|+||+||+|+|||||||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~-ee~~~~~l~V~G~IP~~L~Gt~~RNGpn   84 (529)
T 3npe_A            6 KKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVG-ERPPVHELPVSGRIPPFIDGVYARNGAN   84 (529)
T ss_dssp             --CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCC-CEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred             cCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCccccc-ccCCcccceEeecCCccCCceEEEecCC
Confidence            4578999999999999999999985       6889999999999999994 6666678999999999999999999999


Q ss_pred             CCCCCCCccccccCCCcEEEEEEeCCcE-EEEEEEeechhhHHHHHhCCceeee-cCCCCChhhhHHHHHHHHhhhcccc
Q 007605          140 SKFAPVAGYHWFDGDGMLHGLRIKDGKA-AYVSRYVKTSRLKQEEFFGGAKFTK-IGDVKGLFGLLMVNMTLLRESFKVL  217 (596)
Q Consensus       140 p~~~~~~~~H~FDGdGMlh~~~f~~G~a-~y~~RfVrT~~~~~E~~aG~~~~~~-~g~~~g~~g~~~~~~~~~r~~~g~~  217 (596)
                      |+|.+..++||||||||||+|+|++|+| +|+||||||++|++|+++|+++|++ +|++++..++.+..+...|..++++
T Consensus        85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (529)
T 3npe_A           85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV  164 (529)
T ss_dssp             CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred             cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence            9988888899999999999999999999 9999999999999999999999998 8988887777777777777777777


Q ss_pred             ccCCCCCCcceEEEEeCCeEEEEEecCCceEEeeCCCCCcccccccccCCCCCCCCCCCceecCCCCeEEEEeecCC-CC
Q 007605          218 DFSYGNGAGNTALIYHHGKLLVLSEIDKPYVLKVLKDGDLQTLGMLDYDKRLNHPFTAHPKIDPYTDEMFTFGYTQT-PP  296 (596)
Q Consensus       218 d~~~~~~~ANT~v~~~~grLlAl~E~~~Py~ld~~~~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~TGel~~f~~~~~-~p  296 (596)
                      +...++++|||||++|+||||||||+|+||++++++++||||+|++||+|+|..+||||||+||.||||++|+|+.. +|
T Consensus       165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p  244 (529)
T 3npe_A          165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP  244 (529)
T ss_dssp             CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred             cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence            76666899999999999999999999999999887767999999999999999999999999999999999999964 69


Q ss_pred             eEEEEEecCCCCeeecEEEecCCccceeeeeeCCCEEEEEeCCeecchhhhhhcCceeEEEcCCCCeEEEEEEccCCCCc
Q 007605          297 YVTYRVISKDGFMHDPVPITMSAPIMMHDFAITENYAIFLDLPMCFRQKEMVKENKLIYAFDPTIKARFGVLPRYARDDL  376 (596)
Q Consensus       297 ~l~y~~~d~~G~~~~~~~i~l~~p~~~HDFaiTeny~V~~d~pl~~~~~~ml~~g~~~~~~d~~~~sr~~VipR~~~d~~  376 (596)
                      +++|+++|++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|++ |+.++.|+|++++|||||||++++.+
T Consensus       245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~-g~~~~~~~p~~~tr~~VipR~~~~~~  323 (529)
T 3npe_A          245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLR-GGSPVVLDAAKTSRFGVLPKHAADAS  323 (529)
T ss_dssp             CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTT-TCCSEEECTTSCCEEEEEETTCSSGG
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhC-CCCceEECCCCCcEEEEEECCCCCCC
Confidence            99999999999999999999999999999999999999999999999999987 67899999999999999999987667


Q ss_pred             ceEEEEcCceeeeecccccccC-CCeEEEEEEecCCCCCcccCCcccccccccCccEEEEEEeCCCCceeEEeeCC----
Q 007605          377 QIRWFELPNCYIFHNANAWEEE-EDEVVLITCRVRNPDLDMFNGPLKETLEDQTTELYEMRFNMKTGLASQKKLSP----  451 (596)
Q Consensus       377 ~v~wfe~p~~f~fH~~NA~Ee~-~deIvvd~~~~~~~~~~~~~g~~~~~~~~~~~~L~r~rinl~tg~v~~~~L~~----  451 (596)
                      .++||++|+||+||++|||||+ +|+|||+.||+.+.+. .+.    ...+.+.++|+|||||+++|+++++.|.+    
T Consensus       324 ~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~-~~~----~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~  398 (529)
T 3npe_A          324 EMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADS-IFN----ESDERLESVLTEIRLDARTGRSTRRAVLPPSQQ  398 (529)
T ss_dssp             GCEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCC-SCC----SSSSCCCCEEEEEEECTTTCCEEEEESSCSSSC
T ss_pred             ceEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchh-hhh----ccchhhccceEEEEEcCCCCCEEeEEecccccC
Confidence            8999999999999999999985 3789999999876541 111    11345678999999999999999998874    


Q ss_pred             CCCCCCccCCCCCCCCCCeEEEecccccCCCCeEEEEecccCCccCceeeeecCceeeEEEcCCCccCcceEEeeCCCCC
Q 007605          452 ACVDFPRINEHYMGRKQRYVYGSILENIAKVTGMIKFDLRAEPETGKTKLEVGGNVKGIFDLGPGRFGSEAVFVPREPSS  531 (596)
Q Consensus       452 ~~~EfP~In~~~~Gr~~RY~Y~~~~~~~~~~~gi~K~Dl~~~~~~g~~~~~v~~~~~~~~~~g~g~~~~EPiFVPr~~~~  531 (596)
                      .++|||+||++|.||+|||+|+++.++++++++|+|+|+++    |+.         +.||+|+|+|+|||+||||+++.
T Consensus       399 ~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~t----g~~---------~~~~~g~~~~~~EPvFVPrp~~~  465 (529)
T 3npe_A          399 VNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLST----GEL---------TKFEYGEGRFGGEPCFVPMDPAA  465 (529)
T ss_dssp             CCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTT----CCE---------EEEECCTTBCCCCCEEEECCSCS
T ss_pred             ccccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCC----Cce---------EEEEcCCCccccCCEeeeCCCCC
Confidence            89999999999999999999999988888899999999996    542         25899999999999999999710


Q ss_pred             --CCCCCCcEEEEEEEeCCCCceeEEEEeCCCCCCCceEEEEcCCcCCCCCCccccChhhHHHhh
Q 007605          532 --TSEEDDGYLIFHVHDENTGKSAVYVIDAKTMSADPVAVIELPHRVPYGFHGIFLSEEQLEELA  594 (596)
Q Consensus       532 --~~~EDDGyLLs~V~d~~~~~S~L~IlDA~~~~~~pVArv~LP~rVP~GFHG~fv~~~~l~~~~  594 (596)
                        +.+|||||||++|||+.+++|+|+||||++|+  +|||++||+||||||||+|++++||++|+
T Consensus       466 ~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l~--~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          466 AHPRGEDDGYVLTFVHDERAGTSELLVVNAADMR--LEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             SSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTTE--EEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             CCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCCc--cceEEECCCCCCCCccccccCHHHhhhhh
Confidence              26899999999999999999999999999997  69999999999999999999999999996

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00