Citrus Sinensis ID: 007616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
Protein Sequence
MFTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHccccccccHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccEEccccccEEEcHHHHHHHHHHHHccEEEEEEcccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHccccccEEccccccccccccHHHccccccccEEcccccccccccccccccccccccccEEEcccccccHHHHccccccccEEEEccccccccHHHHHHHcccccccccEEEEEEcccHHHHHHHccccccccccEEEEccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccEEEcccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEcccccHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccEEEccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEccHHHHHHHccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHcccccccccccccHHHEEcHHccccHHHHHEEEEEEccccccEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEHHHHHHHHHHHHHcccEEEEHcccccccccccccccccccHHHHHHHHHHccccHHHccccccccccccEEEcccccccccccccccccccEEEEEcccccHccccccccccccccEEEEcccccHccccccccccccccEcEEEEEcccccccHHHcccHHHcccEEEEccccccccHHHHHHHcHcccccccEEEEEcccccHHHHHHHccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEccccccEEccHHHcccccccccccccEEEccccccHHHccEEEEccccHHHcccccccccccEEEEcccccccccccccccccEEEEcccccccccccccccccccccEEEcccccccHHccHHccccccccEEEEcccccccEccccccccccccccccccccccEEEEcccccHcccccccccccccEEEEcccHHHHHHHHcccccccccEEEccEEEEEc
Coil and Loop (DISEMBL)
mftsfcrvptsyaLFKGFRGALGVSYYCLLSYVKRCFAYCsflpkgyrfdeRQIVLLWMAEGLLQHETYGKQMEEFGRksfqglhsrsffqqskiDASRFLMHDLIHDLACwasgeicwcmestwdgnnerrfsRNLRHLSYLTSRFDGikrfeglhelpnDIAELKhlryldfsHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLeemplrigklTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTIsglenvndaeDAKEAQLNGKKKLEalspkwgnkIQTCVFEMlkphyglkelkvrgyggtkfpawlgqssFENLVVLRFKncnqcttlpsvghlpslknlVIKGMAKVKSVGLefcgnycsepfpsletlCFEDMQEWEERIGLsivrcpklkgrlpqrfssLERIVITSCEQLLVSytalpplceleIDGFSELFLILQIQGWRsraeilpqeiripnqeSLLDGLQKLSHITRISMVGSLLVYIAeggefpqleslsfvgnltslerlelprcpvlrsfpenvlppslVYLSIYLcpyleerckkdkgeYWHLVADipkfqtrl
Flexible Loop (DISEMBL)
mftsfcrvptsyALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKklealspkwgnKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTlpsvghlpslKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGlsivrcpklkgrLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLrsfpenvlppsLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Low Complexity Region (SEG)
MFTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Disordered region (IsUnstruct)
***SFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISG***********************LSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIP******
Disordered Region (DISOPRED)
MFTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWD****RRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQG**SRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Disordered Region (DISEMBL)
MFTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Disordered Region (DISPRO)
*FTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFTSFCRVPTSYALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPKFQTRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	596	2.2.26 [Sep-21-2011]
Q9LRR4	1054	Putative disease resistan	yes	no	0.692	0.391	0.363	9e-77
Q9LRR5	1424	Putative disease resistan	no	no	0.723	0.302	0.353	2e-67
Q7XA39	988	Putative disease resistan	N/A	no	0.917	0.553	0.323	1e-57
Q7XBQ9	970	Disease resistance protei	N/A	no	0.895	0.550	0.318	9e-56
Q7XA42	979	Putative disease resistan	N/A	no	0.911	0.554	0.307	7e-54
Q7XA40	992	Putative disease resistan	N/A	no	0.919	0.552	0.308	4e-50
O81825	919	Probable disease resistan	no	no	0.367	0.238	0.270	8e-16
Q39214	926	Disease resistance protei	no	no	0.399	0.257	0.286	2e-13
Q38834	852	Disease resistance RPP13-	no	no	0.540	0.377	0.273	2e-12
O64973	889	Disease resistance protei	no	no	0.333	0.223	0.265	5e-10

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  288 bits (737), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 183/504 (36%), Positives = 254/504 (50%), Gaps = 91/504 (18%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
            L VSYY L +++KRCFAYCS  PKG+ F++ ++VLLWMAEG LQ     K +EE G + 
Sbjct: 414 VLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEY 473

Query: 81  FQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHL 140
           F  L SRS  Q++K   +R++MHD I++LA +ASGE      S ++   + + S   R+L
Sbjct: 474 FSELESRSLLQKTK---TRYIMHDFINELAQFASGEFS----SKFEDGCKLQVSERTRYL 526

Query: 141 SYLTSRFDGIKRFEGLHEL----------------------------------------- 159
           SYL   +     FE L E+                                         
Sbjct: 527 SYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLS 586

Query: 160 --------PNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIG 211
                   P+    + H R+LD S T +E L +S+  +YNLQTL+L YC  LK+L  DI 
Sbjct: 587 HYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDIS 646

Query: 212 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTI 271
           NL+NLR+L D     L +MP R G+L SL+TL  F V   + S + EL  L  L  KL I
Sbjct: 647 NLINLRYL-DLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKI 705

Query: 272 SGLENVNDAEDAKEAQLNGKKKLEALSPKW--------------GNKIQTCVFEMLKPHY 317
             L+ V D  DA EA LN KK L  +   W                + +  VFE L+PH 
Sbjct: 706 VELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHR 765

Query: 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAK 377
            +++L +  Y G +FP WL   SF  +V +R + C  CT+LPS+G LP LK L I GM  
Sbjct: 766 HIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVG 825

Query: 378 VKSVGLEF------CGNYCSEPFPSLETLCFEDMQEWEERIG--------------LSIV 417
           ++S+G +F        +   +PF SLETL F+++ +W+E +               L I+
Sbjct: 826 LQSIGRKFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFIL 885

Query: 418 RCPKLKGRLPQRFSSLERIVITSC 441
           RCP+L G LP    SL  + I  C
Sbjct: 886 RCPELTGTLPTFLPSLISLHIYKC 909

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 184/521 (35%), Positives = 241/521 (46%), Gaps = 90/521 (17%)

Query: 12  YALFKGFRG-------ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLL 64
           YA+ K F          L +SY  L   +KRCFA CS  PKG+ FD  ++VLLWMA  LL
Sbjct: 390 YAVSKNFSSYTNSILPVLKLSYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLL 449

Query: 65  QHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMEST 124
                 +++E+ G      L ++SFFQ+  I  + F+MHDL++DLA   SG+ C+ +E  
Sbjct: 450 YQPRSSRRLEDIGNDYLGDLVAQSFFQRLDITMTSFVMHDLMNDLAKAVSGDFCFRLED- 508

Query: 125 WDGNNERRFSRNLRHLSYLTSRFDGIKRFEGL---------------------------- 156
              +N        RH S+  S+ D    F  +                            
Sbjct: 509 ---DNIPEIPSTTRHFSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVL 565

Query: 157 --------------------HELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLI 196
                                 LP  +  LK LRYLD S T I+ L E V TL NLQTL+
Sbjct: 566 NPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLL 625

Query: 197 LEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGL 256
           L  C  L  L   I  L+NLR L D     L EMP  I KL SL+ L+ FV+G+ + +GL
Sbjct: 626 LSNCRDLTSLPKSIAELINLRLL-DLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGL 684

Query: 257 KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK------------ 304
            EL+ L HL+  L IS L+NV  A +AK+A L  K  L+ L  KW  K            
Sbjct: 685 HELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNAL 744

Query: 305 --IQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVG 362
              Q  V  ML+PH  LK   +  Y G  FP WLG SSF  +  +   +CN C +LP VG
Sbjct: 745 ACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVG 804

Query: 363 HLPSLKNLVIKGMAKVKSVGLEFC---GNYCSEPFPSLETLCFEDMQEWEERI------- 412
            LPSLK L I+    ++ VGL+F     N    PF SL+ L F  M  W+E I       
Sbjct: 805 QLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQSLQILKFYGMPRWDEWICPELEDG 864

Query: 413 ------GLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVS 447
                  L I RCP L+ + P+   S   + I+ C    VS
Sbjct: 865 IFPCLQKLIIQRCPSLRKKFPEGLPSSTEVTISDCPLRAVS 905

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  225 bits (573), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 201/621 (32%), Positives = 303/621 (48%), Gaps = 74/621 (11%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
           AL +SY+ L   +++CFAYC+  PK  +  +  ++ LWMA G L  +    ++E+ G + 
Sbjct: 392 ALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKG-NLELEDVGNEV 450

Query: 81  FQGLHSRSFFQQ--SKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLR 138
           +  L+ RSFFQ+  +K   + F +HDLIHDLA         C      GN      ++ +
Sbjct: 451 WNELYLRSFFQEIEAKSGNTYFKIHDLIHDLATSLFSASASC------GNIREINVKDYK 504

Query: 139 HL----------SY---LTSRFDGIK----RFEGLHELPNDIAELKHLRYLDFSHTAIEV 181
           H           SY   L  +F  ++     +  L +LP+ I +L HLRYLD S      
Sbjct: 505 HTVSIGFAAVVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRS 564

Query: 182 LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241
           L E +  L NLQTL +  CY L  L      L +LRHL      L    P RIG LT L+
Sbjct: 565 LPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPL-TSTPPRIGLLTCLK 623

Query: 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKW 301
           TL  F+VG      L EL++L +L   ++I+ LE V +  DA EA L+ K  L++LS  W
Sbjct: 624 TLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW 681

Query: 302 GNK-------IQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ 354
            N         +  V E LKPH  LK L++  +GG +FP+W+  S  E ++ +R K+C  
Sbjct: 682 DNDGPNRYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKN 741

Query: 355 CTTLPSVGHLPSLKNLVIK-GMAKVKSVGLEFCGNYCS--EPFPSLETLCFEDMQEWEER 411
           C  LP  G LP L+NL ++ G A+V+ V  +   +  S    FPSL+ L     + W  R
Sbjct: 742 CLCLPPFGELPCLENLELQNGSAEVEYVEEDDVHSRFSTRRSFPSLKKL-----RIWFFR 796

Query: 412 IGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDG---------F 462
              S+    K +G   ++F  LE + I  C   L  +  L  + +LE+ G          
Sbjct: 797 ---SLKGLMKEEGE--EKFPMLEEMAILYCP--LFVFPTLSSVKKLEVHGNTNTRGLSSI 849

Query: 463 SELFLILQIQ-GWRSRAEILPQEI--RIPNQESL----LDGLQKL-SHITRISMVGSLLV 514
           S L  +  ++ G   RA  LP+E+   + N E L       L+ L + +T ++ +  L +
Sbjct: 850 SNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQI 909

Query: 515 YIAEGGE-FPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLP-PSLVYLSIYLCPYLE 572
              +  E FP+      +  LTSL +L +  C +L+  PE +    +L  L +  CP +E
Sbjct: 910 ESCDSLESFPE----QGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTALTNLGVSGCPEVE 965

Query: 573 ERCKKDKGEYWHLVADIPKFQ 593
           +RC K+ GE WH +A IP   
Sbjct: 966 KRCDKEIGEDWHKIAHIPNLD 986

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  218 bits (556), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 194/610 (31%), Positives = 293/610 (48%), Gaps = 76/610 (12%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
           AL +SY+ L   +K+CFAYC+  PK  + ++ +++ LWMA G L  +    ++E+ G + 
Sbjct: 391 ALRLSYHQLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKG-NMELEDVGDEV 449

Query: 81  FQGLHSRSFFQQSKIDASR--FLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLR 138
           ++ L+ RSFFQ+ ++   +  F MHDLIHDLA            S +  N      R + 
Sbjct: 450 WKELYLRSFFQEIEVKDGKTYFKMHDLIHDLAT-----------SLFSANTSSSNIREIN 498

Query: 139 HLSYLTSRFDG------------IKRFEGL----------HELPNDIAELKHLRYLDFSH 176
             SY      G            +++F  L          ++LP+ I +L HLRYL+   
Sbjct: 499 KHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYG 558

Query: 177 TAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK 236
           + +  L + +  L NLQTL L+YC +L  L  +   L +LR+L    S  L  MP RIG 
Sbjct: 559 SGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGS 618

Query: 237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEA 296
           LT L+TL +FVVG+     L EL +L +L   + IS LE V + +DAKEA L+ K  L +
Sbjct: 619 LTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHS 677

Query: 297 LSPKWGN-------KIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRF 349
           LS  W N         +  V E LKPH  L  LK+ G+ G   P W+  S  +N+V +  
Sbjct: 678 LSMSWNNFGPHIYESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILI 737

Query: 350 KNCNQCTTLPSVGHLPSLKNLVIK-GMAKVKSVGLEFCGNYCSEP----FPSLETLCFED 404
            N   C+ LP  G LP L++L +  G A V+ V       +   P    FPSL  L   D
Sbjct: 738 SNFRNCSCLPPFGDLPCLESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKL---D 794

Query: 405 MQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSE 464
           + ++    GL       LK    ++F  LE ++I  C  L +S + L  L  L I  +++
Sbjct: 795 IWDFGSLKGL-------LKKEGEEQFPVLEEMIIHECPFLTLS-SNLRALTSLRI-CYNK 845

Query: 465 LFLILQIQGWRSRAEILPQEI-RIPNQESLLDGLQKLSHIT--RISMVGSLLVYIAEGGE 521
           +      + +++ A +    I R  N + L   L  L+ +   +I +  +L     EG E
Sbjct: 846 VATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLE 905

Query: 522 FPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLP-PSLVYLSIYLCPYLEERCKKDKG 580
                       L+SL  L +  C +L+  PE +    +L  L I  CP L +RC+K  G
Sbjct: 906 -----------GLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIG 954

Query: 581 EYWHLVADIP 590
           E WH ++ IP
Sbjct: 955 EDWHKISHIP 964

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  212 bits (540), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 188/611 (30%), Positives = 289/611 (47%), Gaps = 68/611 (11%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
           AL +SY+ L   +++CF YC+  PK  +  +  ++  WMA G L  +    ++E+ G + 
Sbjct: 390 ALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKG-NLELEDVGNEV 448

Query: 81  FQGLHSRSFFQQSKIDASR--FLMHDLIHDLACW-----ASGEICWCMESTWDGNNER-R 132
           +  L+ RSFFQ+ ++++ +  F MHDLIHDLA        S      + + +DG      
Sbjct: 449 WNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIG 508

Query: 133 FSRNLRHLS-YLTSRFDGIK----RFEGLHELPNDIAELKHLRYLDFS-HTAIEVLSESV 186
           F+  +   S  L  +F  ++    R   L++LP+ I +L HLRYLD S +  I  L + +
Sbjct: 509 FAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRL 568

Query: 187 STLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLK-DSHSNLLEEMPLRIGKLTSLRTLAK 245
             L NLQTL L YC  L  L      L +LR+L  D  S  L   P RIG LT L++L+ 
Sbjct: 569 CKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCS--LTSTPPRIGLLTCLKSLSC 626

Query: 246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWG--- 302
           FV+GK     L EL++L +L   ++I+ L+ V    DAKEA L+ K  L +L   W    
Sbjct: 627 FVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDG 685

Query: 303 -NKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSV 361
            ++  + V E LKPH  LK L++ G+GG + P W+ QS  +N+V +R + C  C+ LP  
Sbjct: 686 KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPF 745

Query: 362 GHLPSLKNLVI-KGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCP 420
           G LP L++L +  G A V+ V      N     FPSL  L   D    +   GL      
Sbjct: 746 GELPCLESLELHTGSADVEYVE----DNVHPGRFPSLRKLVIWDFSNLK---GL------ 792

Query: 421 KLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRS---- 476
            LK    ++F  LE +    C   ++   +     ++ +   + L  I  ++   S    
Sbjct: 793 -LKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDIS 851

Query: 477 ---RAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF--- 530
               A  LP+E        +   L  L ++ +IS   +L            L+SL F   
Sbjct: 852 DNVEATSLPEE--------MFKSLANLKYL-KISFFRNLKELPTSLASLNALKSLKFEFC 902

Query: 531 ----------VGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYL-CPYLEERCKKDK 579
                     V  LTSL  L +  C +L+  PE +   + +       CP + +RC++  
Sbjct: 903 DALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGI 962

Query: 580 GEYWHLVADIP 590
           GE WH +A IP
Sbjct: 963 GEDWHKIAHIP 973

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  199 bits (507), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 191/619 (30%), Positives = 290/619 (46%), Gaps = 71/619 (11%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
           AL +SY+ L   +++CFAYC+  PK  + ++  ++ LWMA   L  +    ++E+ G + 
Sbjct: 390 ALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKG-NMELEDVGNEV 448

Query: 81  FQGLHSRSFFQQSKIDASR--FLMHDLIHDLACWASGEICWCME----STWDGNNERRFS 134
           +  L+ RSFFQ+ ++ + +  F MHDLIHDLA                +  D  +     
Sbjct: 449 WNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSASASSRSIRQINVKDDEDMMFIV 508

Query: 135 RNLRHL----------SYLTSRFDGIKRFEGL----------HELPNDIAELKHLRYLDF 174
            N + +          SY  S F   KRF  L           +LP+ + +L HLRYLD 
Sbjct: 509 TNYKDMMSIGFSEVVSSYSPSLF---KRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDL 565

Query: 175 SHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRI 234
           S   I  L + +  L NLQTL L  C  L  L      L +LR+L   H  L   MP RI
Sbjct: 566 SGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPL-TSMPPRI 624

Query: 235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL 294
           G LT L+TL  FVVG+     L ELR+L +L+  ++I+ LE V +  +AKEA L+ K  L
Sbjct: 625 GLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANL 683

Query: 295 EALSPKWG--NKIQT---CVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRF 349
            +LS  W   N+ ++    V E LKPH  LK L++  + G   P W+  S  +N+V +  
Sbjct: 684 HSLSMSWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILI 743

Query: 350 KNCNQCTTLPSVGHLPSLKNLVIK-GMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEW 408
             C  C+ LP  G LP L++L ++ G  +V+ V  E  G      FPSL  L        
Sbjct: 744 SGCENCSCLPPFGELPCLESLELQDGSVEVEYV--EDSGFLTRRRFPSLRKL-------- 793

Query: 409 EERIG--LSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELF 466
              IG   ++    ++KG   ++F  LE + I+ C   +  +  L  + +LEI G ++  
Sbjct: 794 --HIGGFCNLKGLQRMKG--AEQFPVLEEMKISDCPMFV--FPTLSSVKKLEIWGEADAG 847

Query: 467 LILQIQGWRSRA--EILPQEIRIPNQESLLDGLQKLSH--ITRISMVGSLLVYIAEGGEF 522
            +  I    +    +I          E +   L+ L +  ++ +  +  L   +A     
Sbjct: 848 GLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNL 907

Query: 523 P--------QLESLSFVG--NLTSLERLELPRCPVLRSFPENVLP-PSLVYLSIYLCPYL 571
                     LESL   G   L+SL  L +  C +L+  PE +    +L  L I  CP L
Sbjct: 908 KCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQL 967

Query: 572 EERCKKDKGEYWHLVADIP 590
            +RC+K  GE WH ++ IP
Sbjct: 968 IKRCEKGIGEDWHKISHIP 986

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 25/244 (10%)

Query: 20  GALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRK 79
           G L +SY  L   +K CF +C+  P+ Y     ++++ W+AEGLL  + + + M   G  
Sbjct: 350 GTLKLSYDFLQDNMKSCFLFCALFPEDYSIKVSELIMYWVAEGLLDGQHHYEDMMNEGVT 409

Query: 80  SFQGLHSRSFFQQSKIDASRFLMHDLIHDLACW---ASGEICWCMESTWDGNNE---RRF 133
             + L      +          MHD++ D A W   + GE    +     G  E    +F
Sbjct: 410 LVERLKDSCLLEDGD-SCDTVKMHDVVRDFAIWFMSSQGEGFHSLVMAGRGLIEFPQDKF 468

Query: 134 SRNLRHLSYLTSRFDGIKR--FEGLH-------------ELPND-IAELKHLRYLDFSHT 177
             +++ +S + ++ + +     EG+              E+PN  +    +LR LD S  
Sbjct: 469 VSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILDLSGV 528

Query: 178 AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237
            I  L +S S L++L++L+L  C +L+ L P + +LV L+ L D H + + E+P  +  L
Sbjct: 529 RIRTLPDSFSNLHSLRSLVLRNCKKLRNL-PSLESLVKLQFL-DLHESAIRELPRGLEAL 586

Query: 238 TSLR 241
           +SLR
Sbjct: 587 SSLR 590

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 20/258 (7%)

Query: 15  FKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQME 74
            K  R  + +S+  L   +KRCF YCS  P  YR   ++++ +WMA+  ++    G + E
Sbjct: 413 LKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVE-PIRGVKAE 471

Query: 75  EFGRKSFQGLHSRSFFQQSKID----ASRFLMHDLIHDLACWASG--EICWCMESTWDGN 128
           E        L  R+  Q    +       F MHD+I ++A   S     C       DG+
Sbjct: 472 EVADSYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGD 531

Query: 129 NERRFSRNL--RHLSYLTSRFDGIKRFEGLHEL---------PNDIAELKHLRYLDFSHT 177
           +      N   RHL           R   LH L            +  L  LR LD   +
Sbjct: 532 DAAETMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDS 591

Query: 178 AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL 237
           +I  L + + T++NL+ L L    ++K+L  +   LVNL  L   HS  +EE+PL + KL
Sbjct: 592 SISKLPDCLVTMFNLKYLNLSKT-QVKELPKNFHKLVNLETLNTKHSK-IEELPLGMWKL 649

Query: 238 TSLRTLAKFVVGKGNCSG 255
             LR L  F   +G+ S 
Sbjct: 650 KKLRYLITFRRNEGHDSN 667

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 160/373 (42%), Gaps = 51/373 (13%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
           +L +SY  L S++K C    S  P+     ++Q+V  W+ EG +     G+   E G   
Sbjct: 403 SLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRN-GRSATESGEDC 461

Query: 81  FQGLHSRSFFQQSKIDASRFL----MHDLIHDLA-------CWASGEICWCMESTWDGN- 128
           F GL +R   +      S  +    +HD++ DL         +++ E   C      GN 
Sbjct: 462 FSGLTNRCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAKKDSFSNPEGLNCRHLGISGNF 521

Query: 129 NERRFSRN--LRHLSYLTS-------RFDGIKRFEG-----------------LHELPND 162
           +E++   N  LR +   T          D  K+F                   L E+ ++
Sbjct: 522 DEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLSEILDE 581

Query: 163 IAELKHLRYLDFSHTAIEV-LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKD 221
           IA L+HL  L  S+T   +    S+  L+NLQ L   YC  LK+L P I     L  L  
Sbjct: 582 IASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDM 641

Query: 222 SHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCS-GLKELRSLMHLQEKLTISGLENVNDA 280
           ++   LE  P  IG L  L  L  F   + N    L E+++L +L+ KL +S L   +  
Sbjct: 642 TNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLTNLR-KLGLS-LTRGDQI 699

Query: 281 EDAKEAQLNGKKKLEALS----PKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWL 336
           E+ +   L    KL ++S      +G+ + T +  +  PH  L EL ++ Y G   P+WL
Sbjct: 700 EEEELDSLINLSKLMSISINCYDSYGDDLITKIDALTPPHQ-LHELSLQFYPGKSSPSWL 758

Query: 337 GQSSFENLVVLRF 349
              S   L +LR+
Sbjct: 759 ---SPHKLPMLRY 768

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 100/245 (40%), Gaps = 46/245 (18%)

Query: 33  VKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQ 92
           +K CF YCS  P+ Y  D+  +V  W++EG +  +   ++    G +    L       +
Sbjct: 408 MKSCFLYCSLFPEDYLIDKEGLVDYWISEGFINEKEGRERNINQGYEIIGTLVRACLLLE 467

Query: 93  SKIDASRFLMHDLIHDLACWASGEICWCME----------------STWDG-------NN 129
            + + S   MHD++ ++A W S ++    E                  W+        NN
Sbjct: 468 EERNKSNVKMHDVVREMALWISSDLGKQKEKCIVRAGVGLREVPKVKDWNTVRKISLMNN 527

Query: 130 ERRFSRNLRHLSYLTSRF----DGIK------------------RFEGLHELPNDIAELK 167
           E     +    + LT+ F    D +K                    + L+ELP +I+EL 
Sbjct: 528 EIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEISELA 587

Query: 168 HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLL 227
            LRY + S+T I  L   + TL  L  L LE+   L  +   I NL NLR L    S LL
Sbjct: 588 SLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSIL-GISNLWNLRTLGLRDSRLL 646

Query: 228 EEMPL 232
            +M L
Sbjct: 647 LDMSL 651

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.906	0.379	0.416	1e-109
225449649	1418	PREDICTED: putative disease resistance p	0.926	0.389	0.385	1e-106
400131587	1388	FB_MR5 [Malus x robusta]	0.916	0.393	0.378	1e-105
296090374	908	unnamed protein product [Vitis vinifera]	0.909	0.596	0.4	1e-104
147798820	1385	hypothetical protein VITISV_007076 [Viti	0.906	0.389	0.389	1e-103
359479319	1357	PREDICTED: putative disease resistance p	0.906	0.397	0.389	1e-103
297736321	967	unnamed protein product [Vitis vinifera]	0.897	0.553	0.377	1e-102
147819724	1481	hypothetical protein VITISV_007111 [Viti	0.919	0.370	0.373	1e-102
225450019	1394	PREDICTED: putative disease resistance p	0.919	0.393	0.373	1e-102
359495083	1280	PREDICTED: putative disease resistance p	0.889	0.414	0.389	1e-101

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 259/622 (41%), Positives = 343/622 (55%), Gaps = 82/622 (13%)

Query: 22   LGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSF 81
            L +SY+ L  ++KRCFAYCS  P+ Y F+E+Q++LLWMAEGL+      K ME+ G + F
Sbjct: 411  LRLSYHHLPHHLKRCFAYCSLFPRDYEFEEKQLILLWMAEGLIYQAEGDKPMEDLGGEYF 470

Query: 82   QGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHLS 141
            + L SRSFFQQS  + SRF+MHDLI DLA W +G   + +E+   GN + + S   RHLS
Sbjct: 471  RDLLSRSFFQQSSSNKSRFVMHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLS 530

Query: 142  YLTSRFDGIKRFEGLHE------------------------------------------- 158
            ++ SR+DG K+FE + E                                           
Sbjct: 531  FVGSRYDGAKKFEAISEFKHLRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGY 590

Query: 159  ----LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214
                LP  I +LKHLRYLD S T +  L  S+STLYNLQTL+LE C  LK L PD G L 
Sbjct: 591  RIVYLPQTIGDLKHLRYLDLSCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLF 650

Query: 215  NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNC-SGLKELRSLMHLQEKLTISG 273
            NLRHL    SNLLE MPL IG L+SL+TL+ FVVGK +    ++EL  L+HL+  L IS 
Sbjct: 651  NLRHLNIFGSNLLEGMPLSIGNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISK 710

Query: 274  LENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--------QTCVFEMLKPHYGLKELKVR 325
            LENV  A++A+++ L GK+ L  +  +W + +        Q  V  ML+P+  LKEL V+
Sbjct: 711  LENVTKAQEARDSYLYGKQDLNEVVMEWSSNLNESQDEETQLEVLNMLQPNVKLKELTVK 770

Query: 326  GYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEF 385
             YGGTKFP W+G  SF NLV+LRF+NC+ C +LP VG LP LK+L+IKGMA VKSVG EF
Sbjct: 771  CYGGTKFPTWIGDPSFSNLVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREF 830

Query: 386  CGNYCSEPFPSLETLCFEDMQEWEERI------------GLSIVRCPKLKGRLPQRFSSL 433
             G  CS PF SLETL FEDM  W   I             LSI+RC  L  +LP    SL
Sbjct: 831  YGESCSRPFQSLETLHFEDMPRWVNWIPLGVNEAFACLHKLSIIRCHNLVRKLPDHLPSL 890

Query: 434  ERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQES- 492
            +++VI  C  ++VS + LP LC L I+G   +     +      +    +     N  + 
Sbjct: 891  KKLVIHGCWNMVVSVSNLPMLCVLVIEGCKRVECESSVGFGSPYSMAFSKISEFGNATAG 950

Query: 493  LLDGLQKLSHITRIS--MVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRS 550
            L+ G+ K+ ++  +    + +L   I EG     L  L F      L  L +  CP L S
Sbjct: 951  LMHGVSKVEYLKIVDSEKLTTLWEKIPEG-----LHRLKF------LRELSIEDCPTLVS 999

Query: 551  FPENVLPPSLVYLSIYLCPYLE 572
            FP +  P  L  + I  C  L+
Sbjct: 1000 FPASGFPSMLKVIQIKSCSGLK 1021

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 255/661 (38%), Positives = 350/661 (52%), Gaps = 109/661 (16%)

Query: 21   ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGK-QMEEFGRK 79
            AL +SY+ L S++KRCFAYCS  PK Y FD++++VLLWMAEGL+Q    GK QME+ G  
Sbjct: 417  ALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELVLLWMAEGLIQQSPKGKKQMEDMGSD 476

Query: 80   SFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRH 139
             F  L SRSFFQ S  + SRF+MHDLI+DLA + S EIC+ +E + D N +  FS ++RH
Sbjct: 477  YFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRH 536

Query: 140  LSYLTSRFDGIKRFEGLH------------------------------------------ 157
             S+   +++  ++FE  +                                          
Sbjct: 537  SSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQYYDFFHLTDKVSHDLLPKLRYLRVLS 596

Query: 158  -------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI 210
                   ELPN I +LKHLRYL+ S T I+ L +S+S L+NLQTL+L  C RL +L    
Sbjct: 597  LSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGF 656

Query: 211  GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLT 270
             NL+NLRHL  +H++ LE MP ++GKL SL+TL+KF+VGK    G+KEL  L+HL+ KL+
Sbjct: 657  KNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLS 716

Query: 271  ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK---------IQTCVFEMLKPHYGLKE 321
            I  L+NV D +DA++A L  K  LE L  +W +          I+  V   L+P+  LK+
Sbjct: 717  ILDLQNVVDIQDARDANLKDKHHLEELLMEWSSNMFDDSQNETIELNVLHFLQPNTNLKK 776

Query: 322  LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV 381
            L ++ YGG  FP W+G  SF  +V L    C +CT LPS+G L SLK L +KGM  VKSV
Sbjct: 777  LTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSV 836

Query: 382  GLEFCG--NYCSEPFPSLETLCFEDMQEWEERIG---------LSIVRCPKLKGRLPQRF 430
            G+EF G  + C +PFPSLE L FEDM EWEE            L I  CPKL  +LP   
Sbjct: 837  GIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWCSSESYPRLRELEIHHCPKLIQKLPSHL 896

Query: 431  SSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL----------ILQIQGWRSRAEI 480
             SL ++ I  C +L+    +LP L +L +   +E  L           L+++   +   +
Sbjct: 897  PSLVKLDIIDCPKLVAPLPSLPFLRDLIVAECNEAMLRSGGDLTSLITLRLENISNLTFL 956

Query: 481  LPQEIRIPNQESLLD---------------GLQKLSHITRISMVG-SLLVYIAEGGEFP- 523
                +R      +L+               G + LS I  + +V    LV +AE    P 
Sbjct: 957  NEGLVRFLGALEVLEICNCSELKFLLQSGVGFENLSCIRHLVIVMCPKLVLLAEDQPLPC 1016

Query: 524  -----------QLESLSF-VGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYL 571
                        LE L   + +LTSL  L + +CP L S  E   PP L+ L +Y C  L
Sbjct: 1017 NLEYLEINKCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGL 1076

Query: 572  E 572
            E
Sbjct: 1077 E 1077

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 254/671 (37%), Positives = 359/671 (53%), Gaps = 125/671 (18%)

Query: 21   ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEG-LLQHETYGKQMEEFGRK 79
             L ++Y+ L S++KRCFAYCS LP  Y F+E+Q++LLWMAEG +L      KQ+E+ G  
Sbjct: 409  VLRLTYFYLPSHLKRCFAYCSILPNDYEFEEKQMILLWMAEGFILPRPEDKKQIEDLGAD 468

Query: 80   SFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNER-RFSRNLR 138
             F+ L SRS FQ+S    S+++MHDLI DLA WA+GEIC+ +E   + + E+ R     R
Sbjct: 469  YFRDLVSRSLFQKSTKCISKYVMHDLIGDLARWAAGEICFRLEDKQNDDGEQLRCFPKAR 528

Query: 139  HLSYLTSRFDGIKRFE-------------------------------------------- 154
            H SY+    DG+KRFE                                            
Sbjct: 529  HSSYIRGLSDGVKRFEVFSELKYLRTFLPLRKDSFWNYLSRQVAFDLLPKLQYLRVLSFN 588

Query: 155  --GLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGN 212
               + ELP+ I +L++LRYLD S+T I  L +S STLYNLQTLILE C +LK L  D+ N
Sbjct: 589  CYKITELPDSIGDLRYLRYLDLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSN 648

Query: 213  LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG---KGNCSGLKELRSLMHLQEKL 269
            LVNLRHL +S+ +LLE+MP ++G+L +L++L KFVV     G+ SG++EL  LMHL+  L
Sbjct: 649  LVNLRHLNNSNVSLLEDMPPQLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTL 708

Query: 270  TISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN-----KIQTCVFEMLKPHYGLKELKV 324
             IS LENV D EDA+ A LN K++L++L  +W +     + ++ V +ML+PH  LKEL +
Sbjct: 709  CISRLENVTDVEDAQRANLNCKERLDSLVLEWSHSSDTRETESAVLDMLQPHTKLKELTI 768

Query: 325  RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLE 384
            + Y G +F +W+G   F N+V++R + CN C +LP +G LP LK L I+GM  V+SVG E
Sbjct: 769  KSYAGKEFSSWVGVPLFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAE 828

Query: 385  FCGNYCSEPFPSLETLCFEDMQEWEERI---------------GLSIVRCPKLKGRLPQR 429
            F G  CS PFP LETL F DMQ W+  +                L + +C KL+G+LP+ 
Sbjct: 829  FYGE-CSLPFPLLETLEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPEN 887

Query: 430  FSSLERIVITSCEQLLVSYTALPPLCELEIDG-----------------------FSELF 466
              SL  + I  CE+LLVS      L +L IDG                        SEL 
Sbjct: 888  LDSLASLEIVKCEELLVSIANYKQLRQLNIDGCKGVVHTAAKVEFELLESLYLSNISELT 947

Query: 467  LILQIQGWRSRAEILPQEIRIPNQESLLDG-------LQKLSHITRISMVGSLLVYIAEG 519
             +   +  R+   ++ ++++I   E L          LQ+L  + R+ +  + L+    G
Sbjct: 948  SLQTGELCRNGLNMV-RDLKINGCEELTSSLKNEAILLQQLISLGRLEIEDNSLLVEELG 1006

Query: 520  GEFPQLESLSFVG----------------------NLTSLERLELPRCPVLRSFPENVLP 557
             E  +L  L  +G                       L+SL+ L +  C  L SFP+  LP
Sbjct: 1007 KEADELLQLQILGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLP 1066

Query: 558  PSLVYLSIYLC 568
            PSL  + I  C
Sbjct: 1067 PSLKDIEITEC 1077

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090374|emb|CBI40193.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 256/640 (40%), Positives = 346/640 (54%), Gaps = 98/640 (15%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGK-QMEEFGRK 79
           AL +SY+ L S++KRCFAYCS  PK Y FD++++VLLWMAEGL+Q    GK QME+ G  
Sbjct: 93  ALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELVLLWMAEGLIQQSPKGKKQMEDMGSD 152

Query: 80  SFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRH 139
            F  L SRSFFQ S  + SRF+MHDLI+DLA + S EIC+ +E + D N +  FS ++RH
Sbjct: 153 YFCELLSRSFFQLSSCNGSRFVMHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRH 212

Query: 140 LSYLTSRFDGIKRFEGLH------------------------------------------ 157
            S+   +++  ++FE  +                                          
Sbjct: 213 SSFARCKYEVFRKFEDFYKAKNLRTFLALPIHMQYYDFFHLTDKVSHDLLPKLRYLRVLS 272

Query: 158 -------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI 210
                  ELPN I +LKHLRYL+ S T I+ L +S+S L+NLQTL+L  C RL +L    
Sbjct: 273 LSHYEIRELPNSIGDLKHLRYLNLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGF 332

Query: 211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLT 270
            NL+NLRHL  +H++ LE MP ++GKL SL+TL+KF+VGK    G+KEL  L+HL+ KL+
Sbjct: 333 KNLINLRHLDIAHTHQLEVMPPQMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLS 392

Query: 271 ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK---------IQTCVFEMLKPHYGLKE 321
           I  L+NV D +DA++A L  K  LE L  +W +          I+  V   L+P+  LK+
Sbjct: 393 ILDLQNVVDIQDARDANLKDKHHLEELLMEWSSNMFDDSQNETIELNVLHFLQPNTNLKK 452

Query: 322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV 381
           L ++ YGG  FP W+G  SF  +V L    C +CT LPS+G L SLK L +KGM  VKSV
Sbjct: 453 LTIQSYGGLTFPYWIGDPSFSKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSV 512

Query: 382 GLEFCG--NYCSEPFPSLETLCFEDMQEWEERIG---------LSIVRCPKLKGRLPQRF 430
           G+EF G  + C +PFPSLE L FEDM EWEE            L I  CPKL  +LP   
Sbjct: 513 GIEFYGEPSLCVKPFPSLEFLRFEDMPEWEEWCSSESYPRLRELEIHHCPKLIQKLPSHL 572

Query: 431 SSLERIVITSCEQLLVSYTALPPLCE---LEIDGFSEL-FLILQIQGWRSRAEILPQEIR 486
            SL ++ I  C +L+      P  C    LEI+  + L  L + +Q   S  E+  Q  +
Sbjct: 573 PSLVKLDIIDCPKLVAPLPNQPLPCNLEYLEINKCASLEKLPIGLQSLTSLRELSIQ--K 630

Query: 487 IPNQESLLDGLQKLSHITRISMVGSLLVYIAEG--GEFP------------QLESLSFVG 532
            P        L  L+ +    M+ SL +Y  EG  G  P            QLES+S   
Sbjct: 631 CPK-------LCSLAEMDFPPMLISLELYDCEGLEGLLPSTMKRLEIRNCKQLESISLGF 683

Query: 533 NLTSLERLELPRCPVLRSFPENVLP-PSLVYLSIYLCPYL 571
           +  +L+ L +  C  L+S P  +    SL  L IY CP L
Sbjct: 684 SSPNLKMLHIDDCKNLKSLPLQMQSFTSLRDLRIYDCPNL 723

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798820|emb|CAN67609.1| hypothetical protein VITISV_007076 [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/636 (38%), Positives = 343/636 (53%), Gaps = 96/636 (15%)

Query: 17   GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEF 76
            G   +L +SY+ L + +KRCFAYCS  PK Y ++++++VLLWMAEGLL     G+ ME+ 
Sbjct: 413  GILPSLRLSYHYLPTQLKRCFAYCSIFPKDYEYEKQKLVLLWMAEGLLDDSGSGETMEKV 472

Query: 77   GRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRN 136
            G   F+ L  RSFFQQS  D S +LMH+L+H+L+ + SGE C  ME+     N  +    
Sbjct: 473  GDMCFRNLLMRSFFQQSGRDKSLYLMHELMHELSQFVSGEFCLRMEAGKHQKNPEK---- 528

Query: 137  LRHLSYLTSRFDGIKRFEGLHE-------------------------------------- 158
            +RH SYL   +DG ++F+ L E                                      
Sbjct: 529  VRHSSYLRETYDGSEKFDFLREAYNLRTFLPLNMSFEVEACYLTHKVLVHMLPTLKCLRV 588

Query: 159  ----------LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP 208
                      LP+ I  L+HLRYLD S+TAI+ +SESVSTL NLQTL+L +CY + +L  
Sbjct: 589  LSLSHYQITDLPDSIGNLRHLRYLDISYTAIKKISESVSTLVNLQTLVLSHCYHMNELPK 648

Query: 209  DIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEK 268
            ++GNL+NLRHL++S ++ L+ MP+ + KL +L+TL+ FVVGK   S ++ELR L  L   
Sbjct: 649  NMGNLINLRHLENSGTS-LKGMPMEMKKLKNLQTLSAFVVGKHYGSSIRELRDLFCLGGT 707

Query: 269  LTISGLENVNDAEDAKEAQLNGKKKLEALSPKW---GNKI------QTCVFEMLKPHYGL 319
            L+I  LENV DA DA+EA +  KK L+ L  KW    N I      +  V E L+PH  L
Sbjct: 708  LSILNLENVVDAVDAREANVKDKKNLDELVLKWKDNDNNIAVDSQNEASVLEHLQPHKKL 767

Query: 320  KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVK 379
            K+L +  Y G+ FP WLG+ SF N+V L    C  C  LP +G LP+LK+L +     VK
Sbjct: 768  KKLTIDCYSGSNFPDWLGEPSFTNMVFLHLSKCKNCPYLPPLGQLPNLKSLSVVHFDAVK 827

Query: 380  SVGLEFCGNYCS--EPFPSLETLCFEDMQEWEERIGLSIV-------------RCPKLKG 424
             VG EF GN  S  +PF SLETL FE+M EWEE + L I              +CPKL  
Sbjct: 828  RVGAEFYGNDSSSAKPFGSLETLMFEEMPEWEEWVPLRIQGEEFPCLQKLCIRKCPKLTR 887

Query: 425  RLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL--ILQIQGWRS-RAEIL 481
             LP R SSL ++ I+ C QL+VS   +P +CE+++     + L     +    S  A  +
Sbjct: 888  DLPCRLSSLRQLEISECRQLVVSLPTVPSICEVKLHECDNVVLESAFHLTSVSSLSASKI 947

Query: 482  PQEIRIPNQE----SLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESL-SFVGNLTS 536
                 +P  +    S+  GLQ L  +  + +              P+L+ L   +  LTS
Sbjct: 948  FNMTHLPGGQITTSSIQVGLQHLRSLVELHLCNC-----------PRLKELPPILHMLTS 996

Query: 537  LERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLE 572
            L+RLE+ +CP L S PE  LP  L  L I  C  L+
Sbjct: 997  LKRLEIRQCPSLYSLPEMGLPSMLERLEIGGCDILQ 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479319|ref|XP_003632256.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/636 (38%), Positives = 343/636 (53%), Gaps = 96/636 (15%)

Query: 17   GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEF 76
            G   +L +SY+ L + +KRCFAYCS  PK Y ++++++VLLWMAEGLL     G+ ME+ 
Sbjct: 413  GILPSLRLSYHYLPTQLKRCFAYCSIFPKDYEYEKQKLVLLWMAEGLLDDSGSGETMEKV 472

Query: 77   GRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRN 136
            G   F+ L  RSFFQQS  D S +LMH+L+H+L+ + SGE C  ME+     N  +    
Sbjct: 473  GDMCFRNLLMRSFFQQSGRDKSLYLMHELMHELSQFVSGEFCLRMEAGKHQKNPEK---- 528

Query: 137  LRHLSYLTSRFDGIKRFEGLHE-------------------------------------- 158
            +RH SYL   +DG ++F+ L E                                      
Sbjct: 529  VRHSSYLRETYDGSEKFDFLREAYNLRTFLPLNMSFEVEACYLTHKVLVHMLPTLKCLRV 588

Query: 159  ----------LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP 208
                      LP+ I  L+HLRYLD S+TAI+ +SESVSTL NLQTL+L +CY + +L  
Sbjct: 589  LSLSHYQITDLPDSIGNLRHLRYLDISYTAIKKISESVSTLVNLQTLVLSHCYHMNELPK 648

Query: 209  DIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEK 268
            ++GNL+NLRHL++S ++ L+ MP+ + KL +L+TL+ FVVGK   S ++ELR L  L   
Sbjct: 649  NMGNLINLRHLENSGTS-LKGMPMEMKKLKNLQTLSAFVVGKHYGSSIRELRDLFCLGGT 707

Query: 269  LTISGLENVNDAEDAKEAQLNGKKKLEALSPKW---GNKI------QTCVFEMLKPHYGL 319
            L+I  LENV DA DA+EA +  KK L+ L  KW    N I      +  V E L+PH  L
Sbjct: 708  LSILNLENVVDAVDAREANVKDKKNLDELVLKWKDNDNNIAVDSQNEASVLEHLQPHKKL 767

Query: 320  KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVK 379
            K+L +  Y G+ FP WLG+ SF N+V L    C  C  LP +G LP+LK+L +     VK
Sbjct: 768  KKLTIDCYSGSNFPDWLGEPSFTNMVFLHLSKCKNCPYLPPLGQLPNLKSLSVVHFDAVK 827

Query: 380  SVGLEFCGNYCS--EPFPSLETLCFEDMQEWEERIGLSIV-------------RCPKLKG 424
             VG EF GN  S  +PF SLETL FE+M EWEE + L I              +CPKL  
Sbjct: 828  RVGAEFYGNDSSSAKPFGSLETLMFEEMPEWEEWVPLRIQGEEFPCLQKLCIRKCPKLTR 887

Query: 425  RLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL--ILQIQGWRS-RAEIL 481
             LP R SSL ++ I+ C QL+VS   +P +CE+++     + L     +    S  A  +
Sbjct: 888  DLPCRLSSLRQLEISECRQLVVSLPTVPSICEVKLHECDNVVLESAFHLTSVSSLSASKI 947

Query: 482  PQEIRIPNQE----SLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESL-SFVGNLTS 536
                 +P  +    S+  GLQ L  +  + +              P+L+ L   +  LTS
Sbjct: 948  FNMTHLPGGQITTSSIQVGLQHLRSLVELHLCNC-----------PRLKELPPILHMLTS 996

Query: 537  LERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLE 572
            L+RLE+ +CP L S PE  LP  L  L I  C  L+
Sbjct: 997  LKRLEIRQCPSLYSLPEMGLPSMLERLEIGGCDILQ 1032

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736321|emb|CBI24959.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/631 (37%), Positives = 344/631 (54%), Gaps = 96/631 (15%)

Query: 17  GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQ-HETYGKQME- 74
           G   AL +SY  L S +KRCF+YC+  PK Y FD+R+++ LWMAE L+Q  E YG+Q+E 
Sbjct: 321 GILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWMAESLIQCPERYGRQIEI 380

Query: 75  -EFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRF 133
            + G   FQ L SRSFFQ S  + S+F+MHDL++DLA +  GEIC+ +E   +GN ++  
Sbjct: 381 EDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTI 440

Query: 134 SRNLRHLSYLTSRFDGIKRFEGLH------------------------------------ 157
           S+  RH S++  R+D  K+FE  +                                    
Sbjct: 441 SKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQR 500

Query: 158 ------------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK 205
                       E+P+ + +LKHLRYL+ S T ++ L +S+  L+NL+TL+L  C+RL +
Sbjct: 501 LRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIR 560

Query: 206 LFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHL 265
           L   I NL NLRHL  +++N LEEM LRI KL SL+ L+KF+VGK N   +KELR++ HL
Sbjct: 561 LPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHL 619

Query: 266 QEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--------QTCVFEMLKPHY 317
           Q  L IS LENV + +DA++A LN K+KLE L+ +W   +        Q  V + L+PH+
Sbjct: 620 QGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHF 679

Query: 318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAK 377
            L +LK+  YGG +FP W+G  SF  +V +   NC  CT+LP +G LP LK++ I+G+ +
Sbjct: 680 NLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKE 739

Query: 378 VKSVGLEFCGNYC--SEPFPSLETLCFEDMQEWEE------------RIGLSIVRCPKLK 423
           VK VG EF G  C  ++PFPSLE+L F DM +WE+             + L IV CPKL 
Sbjct: 740 VKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLI 799

Query: 424 GRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQ 483
            +LP    SL  + I  C  L+     LP L +L ++  +E               +L  
Sbjct: 800 KKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNE--------------AVLRS 845

Query: 484 EIRIPNQESLLDGLQKLSHITRIS--MVGSLLVYIAEGGEFPQLESLSFVGN----LTSL 537
            + +P+   L  G+ ++  +TR+    +  L     +  +  +  +L  + N    LT L
Sbjct: 846 GLELPSLTEL--GILRMVGLTRLHEWCMQLLSGLQLQSLKIRRCNNLEKLPNGLHRLTCL 903

Query: 538 ERLELPRCPVLRSFPENVLPPSLVYLSIYLC 568
             L++  CP L  FPE   PP L  L IY C
Sbjct: 904 GELKISNCPKLVLFPELGFPPMLRRLVIYSC 934

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819724|emb|CAN69227.1| hypothetical protein VITISV_007111 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/664 (37%), Positives = 352/664 (53%), Gaps = 116/664 (17%)

Query: 17   GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQ-HETYGKQME- 74
            G   AL +SY  L S +KRCF+YC+  PK Y FD+R+++ LWMAE L+Q  E YG+Q+E 
Sbjct: 417  GILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWMAESLIQCPERYGRQIEI 476

Query: 75   -EFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRF 133
             + G   FQ L SRSFFQ S  + S+F+MHDL++DLA +  GEIC+ +E   +GN ++  
Sbjct: 477  EDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTI 536

Query: 134  SRNLRHLSYLTSRFDGIKRFEGLH------------------------------------ 157
            S+  RH S++  R+D  K+FE  +                                    
Sbjct: 537  SKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQR 596

Query: 158  ------------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK 205
                        E+P+ + +LKHLRYL+ S T ++ L +S+  L+NL+TL+L  C+RL +
Sbjct: 597  LRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIR 656

Query: 206  LFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHL 265
            L   I NL NLRHL  +++N LEEM LRI KL SL+ L+KF+VGK N   +KELR++ HL
Sbjct: 657  LPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHL 715

Query: 266  QEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--------QTCVFEMLKPHY 317
            Q  L IS LENV + +DA++A LN K+KLE L+ +W   +        Q  V + L+PH+
Sbjct: 716  QGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHF 775

Query: 318  GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAK 377
             L +LK+  YGG +FP W+G  SF  +V +   NC  CT+LP +G LP LK++ I+G+ +
Sbjct: 776  NLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKE 835

Query: 378  VKSVGLEFCGNYC--SEPFPSLETLCFEDMQEWEE------------RIGLSIVRCPKLK 423
            VK VG EF G  C  ++PFPSLE+L F DM +WE+             + L IV CPKL 
Sbjct: 836  VKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLI 895

Query: 424  GRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL-------------ILQ 470
             +LP    SL  + I  C  L+     LP L +L ++  +E  L             IL+
Sbjct: 896  KKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLELPSLTELGILR 955

Query: 471  IQG------WRSRAEILPQEIRIPNQESLL-------DGLQKLSHITRISMVGSLLVYIA 517
            + G      W  +     Q + I   + L+        GLQ+L     + +V    +   
Sbjct: 956  MVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWENGFAGLQQLQTSNCLELVS---LGKK 1012

Query: 518  EGGEFP-QLESLSF------------VGNLTSLERLELPRCPVLRSFPENVLPPSLVYLS 564
            E  E P +L+SL              +  LT L  L++  CP L  FPE   PP L  L 
Sbjct: 1013 EKHELPSKLQSLKIRRCNNLEKLPNGLHRLTCLGELKISNCPKLVLFPELGFPPMLRRLV 1072

Query: 565  IYLC 568
            IY C
Sbjct: 1073 IYSC 1076

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450019|ref|XP_002272632.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera] gi|451798996|gb|AGF69196.1| disease resistance protein At3g14460-like protein 3 [Vitis labrusca]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 248/664 (37%), Positives = 352/664 (53%), Gaps = 116/664 (17%)

Query: 17   GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQ-HETYGKQME- 74
            G   AL +SY  L S +KRCF+YC+  PK Y FD+R+++ LWMAE L+Q  E YG+Q+E 
Sbjct: 417  GILPALRLSYNHLPSPLKRCFSYCAIFPKDYEFDKRELIRLWMAESLIQCPERYGRQIEI 476

Query: 75   -EFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRF 133
             + G   FQ L SRSFFQ S  + S+F+MHDL++DLA +  GEIC+ +E   +GN ++  
Sbjct: 477  EDLGDDYFQELLSRSFFQPSSSNKSQFVMHDLVNDLAKFVGGEICFSLEENLEGNQQQTI 536

Query: 134  SRNLRHLSYLTSRFDGIKRFEGLH------------------------------------ 157
            S+  RH S++  R+D  K+FE  +                                    
Sbjct: 537  SKKARHSSFIRGRYDVFKKFEAFYGMEYLRTFIALPIDASWRCNWLSNKVLEGLMPKLQR 596

Query: 158  ------------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK 205
                        E+P+ + +LKHLRYL+ S T ++ L +S+  L+NL+TL+L  C+RL +
Sbjct: 597  LRVLSLSGYWISEIPSSVGDLKHLRYLNLSETGVKRLPDSLGNLHNLETLVLSNCWRLIR 656

Query: 206  LFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHL 265
            L   I NL NLRHL  +++N LEEM LRI KL SL+ L+KF+VGK N   +KELR++ HL
Sbjct: 657  LPLSIENLNNLRHLDVTNTN-LEEMSLRICKLKSLQVLSKFIVGKDNGLNVKELRNMPHL 715

Query: 266  QEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--------QTCVFEMLKPHY 317
            Q  L IS LENV + +DA++A LN K+KLE L+ +W   +        Q  V + L+PH+
Sbjct: 716  QGGLCISNLENVANVQDARDASLNKKQKLEELTIEWSAGLDDSHNARNQIDVLDSLQPHF 775

Query: 318  GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAK 377
             L +LK+  YGG +FP W+G  SF  +V +   NC  CT+LP +G LP LK++ I+G+ +
Sbjct: 776  NLNKLKIEYYGGPEFPRWIGDVSFSKMVDVNLVNCRNCTSLPCLGWLPMLKHVRIEGLKE 835

Query: 378  VKSVGLEFCGNYC--SEPFPSLETLCFEDMQEWEE------------RIGLSIVRCPKLK 423
            VK VG EF G  C  ++PFPSLE+L F DM +WE+             + L IV CPKL 
Sbjct: 836  VKIVGREFYGETCLPNKPFPSLESLSFSDMSQWEDWESPSLSEPYPCLLYLEIVNCPKLI 895

Query: 424  GRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL-------------ILQ 470
             +LP    SL  + I  C  L+     LP L +L ++  +E  L             IL+
Sbjct: 896  KKLPTYLPSLVHLSIWRCPLLVSPVERLPSLSKLRVEDCNEAVLRSGLELPSLTELGILR 955

Query: 471  IQG------WRSRAEILPQEIRIPNQESLL-------DGLQKLSHITRISMVGSLLVYIA 517
            + G      W  +     Q + I   + L+        GLQ+L     + +V    +   
Sbjct: 956  MVGLTRLHEWCMQLLSGLQVLDIDECDELMCLWENGFAGLQQLQTSNCLELVS---LGKK 1012

Query: 518  EGGEFP-QLESLSF------------VGNLTSLERLELPRCPVLRSFPENVLPPSLVYLS 564
            E  E P +L+SL              +  LT L  L++  CP L  FPE   PP L  L 
Sbjct: 1013 EKHELPSKLQSLKIRRCNNLEKLPNGLHRLTCLGELKISNCPKLVLFPELGFPPMLRRLV 1072

Query: 565  IYLC 568
            IY C
Sbjct: 1073 IYSC 1076

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495083|ref|XP_003634908.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 242/622 (38%), Positives = 336/622 (54%), Gaps = 92/622 (14%)

Query: 21   ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKS 80
            AL +SY+ L + +KRCFAYCS  PK Y+F++R +VLLWMAEGLL      + +E++G   
Sbjct: 424  ALYLSYHYLPTNLKRCFAYCSIFPKDYKFEKRNLVLLWMAEGLLGGSKREETIEDYGNMC 483

Query: 81   FQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSRNLRHL 140
            F  L SRSFFQQ+  D S FLMHDLIHDLA + SG+ C    S+ D   + + S+  RH 
Sbjct: 484  FDNLLSRSFFQQASDDESIFLMHDLIHDLAQFVSGKFC----SSLDDEKKSQISKQTRHS 539

Query: 141  SY-------LTSRFD------GIKRFEGLH------------------------------ 157
            SY       L+ +FD       ++ F  +H                              
Sbjct: 540  SYVRAEQFELSKKFDPFYEAHNLRTFLPVHTGHQYGRIFLSKKVSDLLLPTLKCLRVLSL 599

Query: 158  ------ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIG 211
                  ELP+ I  LKHLRYLD S T+I  L ES++ L+NLQTL+L  C  L  L  ++G
Sbjct: 600  AHYHIVELPHSIGTLKHLRYLDLSRTSIRRLPESITNLFNLQTLMLSNCISLTHLPTEMG 659

Query: 212  NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTI 271
             L+NL+HL D  + +L+EMP+ +  L  LRTL  FVVG+   + +KELR + HL  +L I
Sbjct: 660  KLINLQHL-DITNTILKEMPMGMKGLKRLRTLTAFVVGEDRGAKIKELRDMSHLGGRLCI 718

Query: 272  SGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI-------QTCVFEMLKPHYGLKELKV 324
            S L+NV DA D  EA L GK++L+ L  +W  +        +T V E L+PH  LKEL +
Sbjct: 719  SKLQNVVDAMDVFEANLKGKERLDELVMQWDGEATARDLQKETTVLEKLQPHNNLKELTI 778

Query: 325  RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLE 384
              Y G KFP WL + SF N+V ++  +C  C++LPS+G L SLK L I  +  V+ VG E
Sbjct: 779  EYYCGEKFPNWLSEHSFTNMVSMQLHDCKNCSSLPSLGQLGSLKELSIMRIDGVQKVGQE 838

Query: 385  FCGNYCS---EPFPSLETLCFEDMQEWEERI----------GLSIVRCPKLKGRLPQRFS 431
            F GN  S   +PF +LE L FE+M EWEE +           L I +CPKLK  LP+   
Sbjct: 839  FYGNIGSSSFKPFEALEILRFEEMLEWEEWVCREIEFPCLKELYIKKCPKLKKDLPKHLP 898

Query: 432  SLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILP-QEIRIPNQ 490
             L ++ I  C+QL+      P + +LE++   ++ +       RS   +     + I N 
Sbjct: 899  KLTKLEIRECKQLVCCLPMAPSIRKLELEKCDDVVV-------RSAGSLTSLASLDISNV 951

Query: 491  ESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRS 550
              + D L +L      S+V   +++  E  E P +     + NLTSL+ L++  C  L S
Sbjct: 952  CKIPDELGQLH-----SLVELYVLFCPELKEIPPI-----LHNLTSLKDLKVENCESLAS 1001

Query: 551  FPENVLPPSLVYLSIYLCPYLE 572
            FPE  LPP L  L I+ CP LE
Sbjct: 1002 FPEMALPPMLESLQIFSCPILE 1023

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.689	0.389	0.342	1.9e-50
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.488	0.204	0.404	2.6e-45
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.407	0.134	0.260	1.1e-14
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.332	0.127	0.320	3.3e-11
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.390	0.251	0.288	7.8e-11
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.427	0.299	0.286	3.1e-10
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.359	0.154	0.331	3.8e-10
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.159	0.104	0.267	1e-09
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.897	0.526	0.235	7.9e-09
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.897	0.526	0.235	7.9e-09

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
 Identities = 157/459 (34%), Positives = 231/459 (50%)

Query:   159 LPNDIAE-LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLR 217
             LP D  + + H R+LD S T +E L +S+  +YNLQTL+L YC  LK+L  DI NL+NLR
Sbjct:   593 LPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLR 652

Query:   218 HLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENV 277
             +L D     L +MP R G+L SL+TL  F V   + S + EL  L  L  KL I  L+ V
Sbjct:   653 YL-DLIGTKLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRV 711

Query:   278 NDAEDAKEAQLNGKKKLEALSPKW--G--------NKIQTC----VFEMLKPHYGLKELK 323
              D  DA EA LN KK L  +   W  G        N  +T     VFE L+PH  +++L 
Sbjct:   712 VDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLA 771

Query:   324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGL 383
             +  Y G +FP WL   SF  +V +R + C  CT+LPS+G LP LK L I GM  ++S+G 
Sbjct:   772 IERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGR 831

Query:   384 EF------CGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIV 437
             +F        +   +PF SLETL F+++ +W+E + + + R     G L   F SL+++ 
Sbjct:   832 KFYFSDQQLRDQDQQPFRSLETLRFDNLPDWQEWLDVRVTR-----GDL---FPSLKKLF 883

Query:   438 ITSCEQLLVSY-TALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDG 496
             I  C +L  +  T LP L  L I        +L  Q      E   + ++  + +S  D 
Sbjct:   884 ILRCPELTGTLPTFLPSLISLHIYKCG----LLDFQP--DHHEYSYRNLQTLSIKSSCDT 937

Query:   497 LQK--LSHITRISMVGSLLVYIAEGGEFPQLE-SLSFVGNLTSLERLELPRCPVLRSFPE 553
             L K  L+H   +  +      + +      LE S   +    +L  L +  C  L+  P+
Sbjct:   938 LVKFPLNHFANLDKLE-----VDQCTSLYSLELSNEHLRGPNALRNLRINDCQNLQLLPK 992

Query:   554 -NVLPPSLVYLSIYLCPYLEERCKKDKGEYWHLVADIPK 591
              N LP +L  ++I  C YL +  ++   +Y H    +P+
Sbjct:   993 LNALPQNL-QVTITNCRYLRQPMEQQP-QYHHPQFHLPR 1029

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 129/319 (40%), Positives = 166/319 (52%)

Query:   159 LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRH 218
             LP  +  LK LRYLD S T I+ L E V TL NLQTL+L  C  L  L   I  L+NLR 
Sbjct:   588 LPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLR- 646

Query:   219 LKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVN 278
             L D     L EMP  I KL SL+ L+ FV+G+ + +GL EL+ L HL+  L IS L+NV 
Sbjct:   647 LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVA 706

Query:   279 DAEDAKEAQLNGKKKLEALSPKWGNK----------IQTC----VFEMLKPHYGLKELKV 324
              A +AK+A L  K  L+ L  KW  K             C    V  ML+PH  LK   +
Sbjct:   707 FASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCI 766

Query:   325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLE 384
               Y G  FP WLG SSF  +  +   +CN C +LP VG LPSLK L I+    ++ VGL+
Sbjct:   767 ESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLD 826

Query:   385 FC---GNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSC 441
             F     N    PF SL+ L F  M  W+E I      CP+L+  +   F  L++++I  C
Sbjct:   827 FFFGENNSRGVPFQSLQILKFYGMPRWDEWI------CPELEDGI---FPCLQKLIIQRC 877

Query:   442 EQLLVSYT-ALPPLCELEI 459
               L   +   LP   E+ I
Sbjct:   878 PSLRKKFPEGLPSSTEVTI 896

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 199 (75.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
 Identities = 69/265 (26%), Positives = 121/265 (45%)

Query:    17 GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEF 76
             G   AL +SY  L + +++C +YCS  PKGY F + Q++ +W+A+G ++  +  +++E+ 
Sbjct:   541 GIMQALKLSYDHLSNPLQQCVSYCSLFPKGYSFSKAQLIQIWIAQGFVEESS--EKLEQK 598

Query:    77 GRKSFQGLHSRSFFQQ---SKIDASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRF 133
             G K    L +  F QQ   ++  +  F+MHDL+HDLA     ++     +T DG+     
Sbjct:   599 GWKYLAELVNSGFLQQVESTRFSSEYFVMHDLMHDLA----QKVSQTEYATIDGSECTEL 654

Query:   134 SRNLRHLSYLTS------RFDGIKRFEGLHELPNDIAELKHLRYL----DFSHTAIEVLS 183
             + ++RHLS +T       ++  I R E   +    +     LR L     +     +   
Sbjct:   655 APSIRHLSIVTDSAYRKEKYRNISRNEVFEKRLMKVKSRSKLRSLVLIGQYDSHFFKYFK 714

Query:   184 ESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242
             ++     +L+ L +   Y     F   + N  +LR+LK         +P  + K   L+ 
Sbjct:   715 DAFKEAQHLRLLQITATYADSDSFLSSLVNSTHLRYLKIVTEESGRTLPRSLRKYYHLQV 774

Query:   243 L-AKFVVGKGNCSG-LKELRSLMHL 265
             L   +  G    S  +  L SL HL
Sbjct:   775 LDIGYRFGIPRISNDINNLLSLRHL 799

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 73/228 (32%), Positives = 101/228 (44%)

Query:   156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
             + ELP+ +  L  L  L    TA+  L  S+  L NLQ L L  C  L  +   I  L++
Sbjct:   974 IEELPSCVGYLTSLEDLYLDDTALRNLPSSIGDLKNLQKLHLMRCTSLSTIPETINKLMS 1033

Query:   216 LRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKE-------LRSLMHLQ-E 267
             L+ L  + S  +EE+P+  G L  L  L+      G+C  LK+       L SL+ LQ +
Sbjct:  1034 LKELFINGS-AVEELPIETGSLLCLTDLSA-----GDCKFLKQVPSSIGGLNSLLQLQLD 1087

Query:   268 KLTISGL-ENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326
                I  L E + D    ++  L   K L+AL PK   K+ T           L  L + G
Sbjct:  1088 STPIEALPEEIGDLHFIRQLDLRNCKSLKAL-PKTIGKMDT-----------LYSLNLVG 1135

Query:   327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIK 373
                 + P   G+   ENLV LR  NC     LP S G L SL  L ++
Sbjct:  1136 SNIEELPEEFGK--LENLVELRMNNCKMLKRLPKSFGDLKSLHRLYMQ 1181

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
 Identities = 73/253 (28%), Positives = 110/253 (43%)

Query:    19 RGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGR 78
             R  + +S+  L   +KRCF YCS  P  YR   ++++ +WMA+  ++    G + EE   
Sbjct:   417 RSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVE-PIRGVKAEEVAD 475

Query:    79 KSFQGLHSRSFFQQSKIDA----SRFLMHDLIHDLACWASG--EICWCMESTWDGNNERR 132
                  L  R+  Q    +       F MHD+I ++A   S     C       DG++   
Sbjct:   476 SYLNELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAE 535

Query:   133 FSRNL--RHLSYLTSRFDGIKRFEGLHEL---------PNDIAELKHLRYLDFSHTAIEV 181
                N   RHL           R   LH L            +  L  LR LD   ++I  
Sbjct:   536 TMENYGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISK 595

Query:   182 LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241
             L + + T++NL+ L L    ++K+L  +   LVNL  L   HS + EE+PL + KL  LR
Sbjct:   596 LPDCLVTMFNLKYLNLSKT-QVKELPKNFHKLVNLETLNTKHSKI-EELPLGMWKLKKLR 653

Query:   242 TLAKFVVGKGNCS 254
              L  F   +G+ S
Sbjct:   654 YLITFRRNEGHDS 666

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 81/283 (28%), Positives = 131/283 (46%)

Query:    82 QGLHSRSFFQQSKIDASRFLM-HDLIHDLACWASGEICWCMESTWDGNNERRFS--RNLR 138
             +GL+ R        D  +  + H L   ++   +GE+     +  + +  ++F+  + LR
Sbjct:   508 EGLNCRHLGISGNFDEKQIKVNHKLRGVVSTTKTGEV-----NKLNSDLAKKFTDCKYLR 562

Query:   139 HLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHT-AIEVLSESVSTLYNLQTLIL 197
              L    S FD       L E+ ++IA L+HL  L  S+T  +     S+  L+NLQ L  
Sbjct:   563 VLDISKSIFDA-----PLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDA 617

Query:   198 EYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN--CSG 255
              YC  LK+L P I     L  L  ++   LE  P  IG L  L  L  F   + N  C  
Sbjct:   618 SYCQNLKQLQPCIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARSNNGCK- 676

Query:   256 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALS----PKWGNKIQTCVFE 311
             L E+++L +L+ KL +S L   +  E+ +   L    KL ++S      +G+ + T +  
Sbjct:   677 LSEVKNLTNLR-KLGLS-LTRGDQIEEEELDSLINLSKLMSISINCYDSYGDDLITKIDA 734

Query:   312 MLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKN-CN 353
             +  PH  L EL ++ Y G   P+WL   S   L +LR+ + C+
Sbjct:   735 LTPPHQ-LHELSLQFYPGKSSPSWL---SPHKLPMLRYMSICS 773

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
 Identities = 81/244 (33%), Positives = 108/244 (44%)

Query:   137 LRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLI 196
             L++L  L+ R  G K    + ELP  I  LK L  L    TA++ L  S+  L NLQ L 
Sbjct:   787 LQNLEILSLR--GCK----IQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDLH 840

Query:   197 LEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA----KFVVGKGN 252
             L  C  L K+   I  L +L+ L  + S  +EE+PL+   L SL   +    KF+  K  
Sbjct:   841 LVRCTSLSKIPDSINELKSLKKLFINGS-AVEELPLKPSSLPSLYDFSAGDCKFL--KQV 897

Query:   253 CSGLKELRSLMHLQEKLT-ISGL-ENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVF 310
              S +  L SL+ LQ   T I  L E +      +E +L   K L+ L PK    + T   
Sbjct:   898 PSSIGRLNSLLQLQLSSTPIEALPEEIGALHFIRELELRNCKFLKFL-PKSIGDMDT--- 953

Query:   311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKN 369
                     L  L + G    + P   G+   E LV LR  NC     LP S G L SL  
Sbjct:   954 --------LYSLNLEGSNIEELPEEFGK--LEKLVELRMSNCKMLKRLPESFGDLKSLHR 1003

Query:   370 LVIK 373
             L +K
Sbjct:  1004 LYMK 1007

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
 Identities = 27/101 (26%), Positives = 53/101 (52%)

Query:    22 LGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETY--GKQMEEFGRK 79
             L +S+  L SY+K CF Y +  P+ ++ +  ++   W AEG+   E Y  G+ +++ G+ 
Sbjct:   409 LSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQS 468

Query:    80 SFQGLHSRSFF-QQSKIDASRF---LMHDLIHDLACWASGE 116
               + L  R+    +    ASRF    +HD++ ++  + + E
Sbjct:   469 YLEELVRRNMIIWERDATASRFGTCHLHDMMREVCLFKAKE 509

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 146/619 (23%), Positives = 251/619 (40%)

Query:    22 LGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETY-GKQMEEFGRKS 80
             L +S+  L SY+K CF Y +  P+ Y      +   W AEG+ Q   Y G+ + + G   
Sbjct:   413 LSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVY 472

Query:    81 FQGLHSRSF-FQQSKIDASRFL---MHDLIHDLACWASGEICWCMESTWDGNNERRFSRN 136
              + L  R+    +  +  SRF    +HD++ ++    + E     E+     + R  + N
Sbjct:   473 IEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKE-----ENFLQITSSRPSTAN 527

Query:   137 LRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL- 195
             L+  S +TSR    +    LH +  DI   K    +  +  +  +   S + L  L+ L 
Sbjct:   528 LQ--STVTSRRFVYQYPTTLH-VEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLD 584

Query:   196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN--- 252
             ++E   +  KL   IG L++LR+L   ++ +   +P  +G L  L  L     G+     
Sbjct:   585 LIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTH-IPYSLGNLKLLIYLNLASFGRSTFVP 643

Query:   253 --CSGLKELRSL-----MHLQEKLTISGL---ENVND--AEDAKEAQLNGKKKLEALSPK 300
                 G++ELR L     M  + KL +S L   E + +   E++    L G  +L  L+ K
Sbjct:   644 NVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIK 703

Query:   301 WGNKIQTCVFEMLKPHYG----LKELKVRGYGGTKFPAWLG-QSSFENLVVLRFKNCNQC 355
                 I+    E L    G    L++L++  +G        G    F +L  L  K     
Sbjct:   704 L---IEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKL--YM 758

Query:   356 TTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLC-FEDMQ-EWEERIG 413
               L +  H PS           + ++ LE C     +P P LE L   ++++  +E   G
Sbjct:   759 PRLSTEQHFPS----------HLTTLYLESC-RLEEDPMPILEKLLQLKELELGFESFSG 807

Query:   414 LSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQG 473
               +V C    G  PQ    L  + +   E   V  +++P L  L+I    +L    Q+  
Sbjct:   808 KKMV-CSS--GGFPQ-LQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKL---KQLPD 860

Query:   474 WRSRAEILPQEIRIPNQES-LLDGLQKLSHITRISM---VGSLLVYIAEGGEFPQLESLS 529
                 + +    +     E   L  L +L ++  + +     S  + +  GG FPQL+ LS
Sbjct:   861 EHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSGGGFPQLQKLS 920

Query:   530 FV------------GNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKK 577
                           G++  L  L +  CP L+  P+ +     +Y    L   + ER K+
Sbjct:   921 IYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGL---QFIYSLKNL--KISERWKE 975

Query:   578 ---DKGEYWHLVADIPKFQ 593
                + GE ++ V  IP  +
Sbjct:   976 RLSEGGEEYYKVQHIPSVE 994

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 146/619 (23%), Positives = 251/619 (40%)

Query:    22 LGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETY-GKQMEEFGRKS 80
             L +S+  L SY+K CF Y +  P+ Y      +   W AEG+ Q   Y G+ + + G   
Sbjct:   413 LSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVY 472

Query:    81 FQGLHSRSF-FQQSKIDASRFL---MHDLIHDLACWASGEICWCMESTWDGNNERRFSRN 136
              + L  R+    +  +  SRF    +HD++ ++    + E     E+     + R  + N
Sbjct:   473 IEELVRRNMVISERDVKTSRFETCHLHDMMREVCLLKAKE-----ENFLQITSSRPSTAN 527

Query:   137 LRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL- 195
             L+  S +TSR    +    LH +  DI   K    +  +  +  +   S + L  L+ L 
Sbjct:   528 LQ--STVTSRRFVYQYPTTLH-VEKDINNPKLRALVVVTLGSWNLAGSSFTRLELLRVLD 584

Query:   196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGN--- 252
             ++E   +  KL   IG L++LR+L   ++ +   +P  +G L  L  L     G+     
Sbjct:   585 LIEVKIKGGKLASCIGKLIHLRYLSLEYAEVTH-IPYSLGNLKLLIYLNLASFGRSTFVP 643

Query:   253 --CSGLKELRSL-----MHLQEKLTISGL---ENVND--AEDAKEAQLNGKKKLEALSPK 300
                 G++ELR L     M  + KL +S L   E + +   E++    L G  +L  L+ K
Sbjct:   644 NVLMGMQELRYLALPSDMGRKTKLELSNLVKLETLENFSTENSSLEDLCGMVRLSTLNIK 703

Query:   301 WGNKIQTCVFEMLKPHYG----LKELKVRGYGGTKFPAWLG-QSSFENLVVLRFKNCNQC 355
                 I+    E L    G    L++L++  +G        G    F +L  L  K     
Sbjct:   704 L---IEETSLETLAASIGGLKYLEKLEIYDHGSEMRTKEAGIVFDFVHLKRLWLKL--YM 758

Query:   356 TTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLC-FEDMQ-EWEERIG 413
               L +  H PS           + ++ LE C     +P P LE L   ++++  +E   G
Sbjct:   759 PRLSTEQHFPS----------HLTTLYLESC-RLEEDPMPILEKLLQLKELELGFESFSG 807

Query:   414 LSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQG 473
               +V C    G  PQ    L  + +   E   V  +++P L  L+I    +L    Q+  
Sbjct:   808 KKMV-CSS--GGFPQ-LQRLSLLKLEEWEDWKVEESSMPLLRTLDIQVCRKL---KQLPD 860

Query:   474 WRSRAEILPQEIRIPNQES-LLDGLQKLSHITRISM---VGSLLVYIAEGGEFPQLESLS 529
                 + +    +     E   L  L +L ++  + +     S  + +  GG FPQL+ LS
Sbjct:   861 EHLPSHLTSISLFFCCLEKDPLPTLGRLVYLKELQLGFRTFSGRIMVCSGGGFPQLQKLS 920

Query:   530 FV------------GNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYLEERCKK 577
                           G++  L  L +  CP L+  P+ +     +Y    L   + ER K+
Sbjct:   921 IYRLEEWEEWIVEQGSMPFLHTLYIDDCPKLKKLPDGL---QFIYSLKNL--KISERWKE 975

Query:   578 ---DKGEYWHLVADIPKFQ 593
                + GE ++ V  IP  +
Sbjct:   976 RLSEGGEEYYKVQHIPSVE 994

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	596
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-04

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 21  ALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQ 65
            L +SY  L  ++KRCF Y +  P+ Y   + Q++ LW+AEG + 
Sbjct: 237 ILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVI 281

Length = 285

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 154 EGLH-ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPD-I 210
           +GL   +PNDI++L+HL+ ++ S  +I   +  S+ ++ +L+ L L Y        P+ +
Sbjct: 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY-NSFNGSIPESL 486

Query: 211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCS--GLKELRSLMHLQEK 268
           G L +LR L  + ++L   +P  +G     R    F    G C   GL+     + +  K
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAK 546

Query: 269 LTIS 272
           + I+
Sbjct: 547 IGIA 550

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 15/130 (11%)

Query: 138 RHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLIL 197
            +L  L    + I+       LP+ +  L +L+ LD S   +  L + +S L NL  L L
Sbjct: 140 SNLKELDLSDNKIE------SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193

Query: 198 EYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL-------AKFVVGK 250
               ++  L P+I  L  L  L D  +N + E+   +  L +L  L              
Sbjct: 194 SGN-KISDLPPEIELLSALEEL-DLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Query: 251 GNCSGLKELR 260
           GN S L+ L 
Sbjct: 252 GNLSNLETLD 261

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	596
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.75
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.59
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.56
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.46
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.24
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.98
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.64
KOG4341	483	consensus F-box protein containing LRR [General fu	98.64
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.48
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.47
PLN03150	623	hypothetical protein; Provisional	98.47
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.43
KOG4341	483	consensus F-box protein containing LRR [General fu	98.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.34
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.24
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.04
PRK15386	426	type III secretion protein GogB; Provisional	98.02
PLN03150	623	hypothetical protein; Provisional	97.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.76
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.6
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.84
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.8
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.35
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.02
smart00370	26	LRR Leucine-rich repeats, outliers.	90.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.0
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.4
smart00370	26	LRR Leucine-rich repeats, outliers.	87.4
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	85.84
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.66
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.69

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.9e-43  Score=379.54  Aligned_cols=227  Identities=24%  Similarity=0.391  Sum_probs=174.8

Q ss_pred             cchhhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccc
Q 007616           12 YALFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQ   91 (596)
Q Consensus        12 ~~~~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~   91 (596)
                      .++.+.|+.+|++|||+||+++|.||||||+|||||+|++++||.|||||||+++...++.+++.|+.|+++|++++|++
T Consensus       391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~  470 (889)
T KOG4658|consen  391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI  470 (889)
T ss_pred             CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence            46688999999999999998899999999999999999999999999999999987678999999999999999999999


Q ss_pred             eecC--CCCeEEEcchHHHHHHHhhc-----cceEEeccc--cCCCCccccCCceeEEEEecccccccccccccccCccc
Q 007616           92 QSKI--DASRFLMHDLIHDLACWASG-----EICWCMEST--WDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPND  162 (596)
Q Consensus        92 ~~~~--~~~~~~mhd~i~~l~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~  162 (596)
                      ..+.  ....|+|||+|||||.|+++     .+..++..+  .........+..+|+++++.+....         ++.+
T Consensus       471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---------~~~~  541 (889)
T KOG4658|consen  471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---------IAGS  541 (889)
T ss_pred             hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---------ccCC
Confidence            8762  45889999999999999999     444443322  1111222334678899988876653         3333


Q ss_pred             ccccCCCcEEeecCCC--cccccc-ccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcc
Q 007616          163 IAELKHLRYLDFSHTA--IEVLSE-SVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS  239 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~--i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~  239 (596)
                      . ..+.|++|-+.+|.  +..++. .|..++.|++|||++|..+..+|..|++|.+||+|+++++. +..+|.++++|.+
T Consensus       542 ~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  542 S-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK  619 (889)
T ss_pred             C-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence            2 23357777777774  455543 35667777777777777777777777777777777777777 7777777777777


Q ss_pred             cCCCCcEEec
Q 007616          240 LRTLAKFVVG  249 (596)
Q Consensus       240 L~~L~~~~~~  249 (596)
                      |.+|++....
T Consensus       620 L~~Lnl~~~~  629 (889)
T KOG4658|consen  620 LIYLNLEVTG  629 (889)
T ss_pred             hheecccccc
Confidence            7777765444

>PLN03210 Resistant to P

Probab=100.00  E-value=2e-35  Score=337.29  Aligned_cols=445  Identities=20%  Similarity=0.218  Sum_probs=249.5

Q ss_pred             hhhHHHHHHhhhhhhhh-HHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCcccee
Q 007616           15 FKGFRGALGVSYYCLLS-YVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQS   93 (596)
Q Consensus        15 ~~~i~~~L~lSY~~L~~-~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~   93 (596)
                      .++|+++|++|||+|++ ..|.||+||||||++..+   +.+..|.+.+.+..           +..++.|+++||++..
T Consensus       419 ~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~  484 (1153)
T PLN03210        419 DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVR  484 (1153)
T ss_pred             cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEc
Confidence            46899999999999987 599999999999998744   34777888765432           1237899999999875


Q ss_pred             cCCCCeEEEcchHHHHHHHhhccceEEec---cccCCCC------ccccCCceeEEEEeccc----------cccccccc
Q 007616           94 KIDASRFLMHDLIHDLACWASGEICWCME---STWDGNN------ERRFSRNLRHLSYLTSR----------FDGIKRFE  154 (596)
Q Consensus        94 ~~~~~~~~mhd~i~~l~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~l~~~~~~----------~~~~~~~~  154 (596)
                         .+.++|||++|+||+++++++....+   .-|+...      .......++++.+....          +.++.++.
T Consensus       485 ---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~  561 (1153)
T PLN03210        485 ---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLL  561 (1153)
T ss_pred             ---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCcccc
Confidence               36899999999999999876531000   0011100      01111233443332111          11111111


Q ss_pred             cc--------------ccCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCcccee
Q 007616          155 GL--------------HELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHL  219 (596)
Q Consensus       155 ~l--------------~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L  219 (596)
                      .+              ..+|..+..++ +||+|++.++.+..+|..+ ...+|+.|++++| .+..+|.++..+++|+.|
T Consensus       562 ~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L  639 (1153)
T PLN03210        562 FLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNI  639 (1153)
T ss_pred             EEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEE
Confidence            00              02444454443 4666666666666666655 3566666666666 566666666666666666


Q ss_pred             ecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616          220 KDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP  299 (596)
Q Consensus       220 ~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l  299 (596)
                      +++++..++.+|. ++.+++|++|++.++.... .....+.++.+|+ .+.+.++........    .+ .+++|+.|.+
T Consensus       640 ~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~-~L~L~~c~~L~~Lp~----~i-~l~sL~~L~L  711 (1153)
T PLN03210        640 DLRGSKNLKEIPD-LSMATNLETLKLSDCSSLV-ELPSSIQYLNKLE-DLDMSRCENLEILPT----GI-NLKSLYRLNL  711 (1153)
T ss_pred             ECCCCCCcCcCCc-cccCCcccEEEecCCCCcc-ccchhhhccCCCC-EEeCCCCCCcCccCC----cC-CCCCCCEEeC
Confidence            6666655566653 5666666666654432211 1112233344444 455544433322211    11 3555666666


Q ss_pred             cccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC------CCCC--CCCCCCccceee
Q 007616          300 KWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC------TTLP--SVGHLPSLKNLV  371 (596)
Q Consensus       300 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~l~--~l~~l~~L~~L~  371 (596)
                      ++|.... ..+   ....+|+.|+++++....+|..+   .+++|+.|.+.++...      ..++  .....++|+.|+
T Consensus       712 sgc~~L~-~~p---~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~  784 (1153)
T PLN03210        712 SGCSRLK-SFP---DISTNISWLDLDETAIEEFPSNL---RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF  784 (1153)
T ss_pred             CCCCCcc-ccc---cccCCcCeeecCCCccccccccc---cccccccccccccchhhccccccccchhhhhccccchhee
Confidence            5553211 111   11345666666666666666543   2456666666554311      0111  011235666666


Q ss_pred             ccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC--CCCCCCEEEEeeccChhccCC
Q 007616          372 IKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ--RFSSLERIVITSCEQLLVSYT  449 (596)
Q Consensus       372 L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~--~l~~L~~L~l~~c~~l~~~~~  449 (596)
                      +++|..+..+|..+..      +++|+.|++++|.+++.               +|.  .+++|+.|++++|..+.....
T Consensus       785 Ls~n~~l~~lP~si~~------L~~L~~L~Ls~C~~L~~---------------LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        785 LSDIPSLVELPSSIQN------LHKLEHLEIENCINLET---------------LPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             CCCCCCccccChhhhC------CCCCCEEECCCCCCcCe---------------eCCCCCccccCEEECCCCCccccccc
Confidence            6666666555554433      56666666655544433               221  356677777777766533333


Q ss_pred             CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCC
Q 007616          450 ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLES  527 (596)
Q Consensus       450 ~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~  527 (596)
                      ..++|++|+++++...                      .+|.++  +++|+.| ++.+|+.    ++.+|.         
T Consensus       844 ~~~nL~~L~Ls~n~i~----------------------~iP~si~~l~~L~~L-~L~~C~~----L~~l~~---------  887 (1153)
T PLN03210        844 ISTNISDLNLSRTGIE----------------------EVPWWIEKFSNLSFL-DMNGCNN----LQRVSL---------  887 (1153)
T ss_pred             cccccCEeECCCCCCc----------------------cChHHHhcCCCCCEE-ECCCCCC----cCccCc---------
Confidence            3456666666665411                      234444  6777777 7777777    666655         


Q ss_pred             CCCCCCCCCCCeeecCCCCCCccCC
Q 007616          528 LSFVGNLTSLERLELPRCPVLRSFP  552 (596)
Q Consensus       528 l~~~~~l~~L~~L~l~~c~~l~~lp  552 (596)
                        .+..+++|+.|++++|++++.++
T Consensus       888 --~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        888 --NISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             --ccccccCCCeeecCCCccccccc
Confidence              35566777777777777776553

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1e-27  Score=274.38  Aligned_cols=384  Identities=20%  Similarity=0.216  Sum_probs=228.7

Q ss_pred             cCcccccccCCCcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|..+++
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            56777777888888888888765 66777788888888888887555567777888888888888887755567777788


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      +++|++|++.++.... .....+..+++|+ .+.+.+..    ..+..+..+..+++|+.|+++++. .....+..+..+
T Consensus       235 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l  307 (968)
T PLN00113        235 LTSLNHLDLVYNNLTG-PIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQL  307 (968)
T ss_pred             CCCCCEEECcCceecc-ccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECcCCe-eccCCChhHcCC
Confidence            8888888776665422 2223344445554 55554422    112233345667778888887664 333445556667


Q ss_pred             CCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616          317 YGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF  394 (596)
Q Consensus       317 ~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~  394 (596)
                      ++|+.|++++|... ..|.++.  .+++|+.|++++|...+.+| .++.+++|+.|++++|.....++..++.      +
T Consensus       308 ~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~------~  379 (968)
T PLN00113        308 QNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS------S  379 (968)
T ss_pred             CCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC------c
Confidence            78888888877643 4555555  67788888888877666666 5677788888888877655555544433      4


Q ss_pred             CCcceeecccCc----------cccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccC---hhccCCCCCCcceEE
Q 007616          395 PSLETLCFEDMQ----------EWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQ---LLVSYTALPPLCELE  458 (596)
Q Consensus       395 ~~L~~L~l~~~~----------~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~  458 (596)
                      ++|+.|++.+..          .+..+..+.+.+| ++.+.+|.   .+++|+.|++++|.-   .+..+..+++|+.|+
T Consensus       380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  458 (968)
T PLN00113        380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS  458 (968)
T ss_pred             CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence            556666555421          1112223334332 23333442   455666666665541   123334566666666


Q ss_pred             ecCCccc-----------ceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccC-CCCCC
Q 007616          459 IDGFSEL-----------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEG-GEFPQ  524 (596)
Q Consensus       459 l~~c~~l-----------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~-~~~~~  524 (596)
                      +++|...           ++.+++++|.- .+        .+|..+  +++|+.| ++++|..    .+.+|.. +.+++
T Consensus       459 L~~n~~~~~~p~~~~~~~L~~L~ls~n~l-~~--------~~~~~~~~l~~L~~L-~Ls~N~l----~~~~p~~~~~l~~  524 (968)
T PLN00113        459 LARNKFFGGLPDSFGSKRLENLDLSRNQF-SG--------AVPRKLGSLSELMQL-KLSENKL----SGEIPDELSSCKK  524 (968)
T ss_pred             CcCceeeeecCcccccccceEEECcCCcc-CC--------ccChhhhhhhccCEE-ECcCCcc----eeeCChHHcCccC
Confidence            6666532           23344443321 11        112222  4444445 5555443    2233322 22222


Q ss_pred             CCCCC------------CCCCCCCCCeeecCCCCCCccCCCC-CCCCCccEEEEecCchH
Q 007616          525 LESLS------------FVGNLTSLERLELPRCPVLRSFPEN-VLPPSLVYLSIYLCPYL  571 (596)
Q Consensus       525 L~~l~------------~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~C~~L  571 (596)
                      |+.+.            .+..+++|+.|++++|+....+|.. ..+++|+.|++++|+-.
T Consensus       525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence            22221            4667889999999998776677764 22678999999988643

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.5e-26  Score=264.72  Aligned_cols=254  Identities=20%  Similarity=0.195  Sum_probs=153.2

Q ss_pred             cCCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-ccccccc-cCCcCcEEEcccccc
Q 007616          125 WDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVS-TLYNLQTLILEYCYR  202 (596)
Q Consensus       125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~-~l~~L~~L~L~~~~~  202 (596)
                      |.|+.+.. ..+++.+.+..+...+        .+|..+..+++|++|++++|.+. .+|..+. .+.+|++|++++|..
T Consensus        60 w~gv~c~~-~~~v~~L~L~~~~i~~--------~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l  130 (968)
T PLN00113         60 WQGITCNN-SSRVVSIDLSGKNISG--------KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF  130 (968)
T ss_pred             CcceecCC-CCcEEEEEecCCCccc--------cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc
Confidence            66655543 3467778777665443        45667777888888888888776 6776554 777888888877744


Q ss_pred             ccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh
Q 007616          203 LKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED  282 (596)
Q Consensus       203 ~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~  282 (596)
                      .+.+|.  +.+++|++|++++|.....+|..++++++|++|++.++.... .....+.++++|+ .+.+.+...    ..
T Consensus       131 ~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~-~L~L~~n~l----~~  202 (968)
T PLN00113        131 TGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLE-FLTLASNQL----VG  202 (968)
T ss_pred             ccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc-cCChhhhhCcCCC-eeeccCCCC----cC
Confidence            445553  456777777777777445667677777777777776554322 1122334444444 455544221    12


Q ss_pred             HHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-C
Q 007616          283 AKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-S  360 (596)
Q Consensus       283 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~  360 (596)
                      ..+..+..+++|+.|+++++. .....+..+..+++|+.|++++|... .+|..+.  .+++|+.|++++|...+.+| .
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~  279 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPS  279 (968)
T ss_pred             cCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchh
Confidence            223345666777777776654 23344455566677777777776543 4555555  56677777777766555555 4


Q ss_pred             CCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          361 VGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       361 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      ++.+++|+.|++++|.....++..+..      +++|+.|++.+
T Consensus       280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~l~~  317 (968)
T PLN00113        280 IFSLQKLISLDLSDNSLSGEIPELVIQ------LQNLEILHLFS  317 (968)
T ss_pred             HhhccCcCEEECcCCeeccCCChhHcC------CCCCcEEECCC
Confidence            566677777777766544444433322      56666666654

>PLN03210 Resistant to P

Probab=99.86  E-value=7e-21  Score=218.23  Aligned_cols=336  Identities=20%  Similarity=0.245  Sum_probs=223.7

Q ss_pred             cccccccCCCcEEeecCCCc------c-ccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCcccccc
Q 007616          160 PNDIAELKHLRYLDFSHTAI------E-VLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP  231 (596)
Q Consensus       160 p~~~~~l~~L~~L~L~~~~i------~-~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp  231 (596)
                      +..|..|++|++|.+..+..      . .+|..+..++ +|+.|.+.++ .++.+|..+ ...+|+.|++.++. +..+|
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSK-LEKLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcc-ccccc
Confidence            35578999999999976532      2 5677777664 6999999998 889999887 57899999999998 88999


Q ss_pred             ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616          232 LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE  311 (596)
Q Consensus       232 ~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  311 (596)
                      .++..+++|+.|++.++..     +..++.                          +..+++|+.|++..|.. ....+.
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~-----l~~ip~--------------------------ls~l~~Le~L~L~~c~~-L~~lp~  675 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKN-----LKEIPD--------------------------LSMATNLETLKLSDCSS-LVELPS  675 (1153)
T ss_pred             cccccCCCCCEEECCCCCC-----cCcCCc--------------------------cccCCcccEEEecCCCC-ccccch
Confidence            9999999999988643321     111111                          23345666666665542 233445


Q ss_pred             ccCCCCCccEEEEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          312 MLKPHYGLKELKVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       312 ~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                      .+..+++|+.|++++|. ...+|..+   .+++|+.|++++|..++.+|..  .++|+.|++.++. ++.+|...     
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~-i~~lP~~~-----  744 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA-IEEFPSNL-----  744 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc-cccccccc-----
Confidence            56667788888888764 55666544   4788999999998877777743  4678888888764 55554322     


Q ss_pred             CCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccce
Q 007616          391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFL  467 (596)
Q Consensus       391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~  467 (596)
                        .+++|+.|.+.++....-+.     ....+........++|+.|++++|+.   ++..+.++++|+.|++++|..+. 
T Consensus       745 --~l~~L~~L~l~~~~~~~l~~-----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-  816 (1153)
T PLN03210        745 --RLENLDELILCEMKSEKLWE-----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-  816 (1153)
T ss_pred             --cccccccccccccchhhccc-----cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-
Confidence              26778877777644221110     00001100112346788888887764   35666778888888887776431 


Q ss_pred             eeEecccccccccCCccccccccccc-chhhhccccccccccccccceecccCCC--------CCCCCCCC-CCCCCCCC
Q 007616          468 ILQIQGWRSRAEILPQEIRIPNQESL-LDGLQKLSHITRISMVGSLLVYIAEGGE--------FPQLESLS-FVGNLTSL  537 (596)
Q Consensus       468 ~l~~~~~~~l~~~~p~l~~l~~p~~~-l~~L~~L~~l~~c~~~~~~l~~~~~~~~--------~~~L~~l~-~~~~l~~L  537 (596)
                                          .+|... +++|+.| ++++|..    +..+|....        .+.++.+| ++..+++|
T Consensus       817 --------------------~LP~~~~L~sL~~L-~Ls~c~~----L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L  871 (1153)
T PLN03210        817 --------------------TLPTGINLESLESL-DLSGCSR----LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL  871 (1153)
T ss_pred             --------------------eeCCCCCccccCEE-ECCCCCc----cccccccccccCEeECCCCCCccChHHHhcCCCC
Confidence                                122222 5555555 5665555    444443210        22334444 67889999


Q ss_pred             CeeecCCCCCCccCCCCC-CCCCccEEEEecCchHHHh
Q 007616          538 ERLELPRCPVLRSFPENV-LPPSLVYLSIYLCPYLEER  574 (596)
Q Consensus       538 ~~L~l~~c~~l~~lp~~~-~~~~L~~L~i~~C~~L~~~  574 (596)
                      +.|++.+|++++.+|... .+++|+.+++++|++|++.
T Consensus       872 ~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        872 SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            999999999999998743 3789999999999999754

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=7.7e-22  Score=193.44  Aligned_cols=361  Identities=18%  Similarity=0.165  Sum_probs=246.0

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccC-Cccc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF-PDIG  211 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~  211 (596)
                      .|...+.|.+.++....        .-+..|.++++|+.+++..|.++.+|...+...+|+.|+|.+| .+.++- +.+.
T Consensus        76 lp~~t~~LdlsnNkl~~--------id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~  146 (873)
T KOG4194|consen   76 LPSQTQTLDLSNNKLSH--------IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELS  146 (873)
T ss_pred             Cccceeeeecccccccc--------CcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHH
Confidence            34455556665554443        1234567888888888888888888887777778888888888 665554 3477


Q ss_pred             CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCC
Q 007616          212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNG  290 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~  290 (596)
                      .++.|+.||++.|. +..+|.. +..-.++++|++.++.+++. ....+..+..|. .+.+..    +.........+..
T Consensus       147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l-~~~~F~~lnsL~-tlkLsr----NrittLp~r~Fk~  219 (873)
T KOG4194|consen  147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTL-ETGHFDSLNSLL-TLKLSR----NRITTLPQRSFKR  219 (873)
T ss_pred             hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccccc-ccccccccchhe-eeeccc----CcccccCHHHhhh
Confidence            78888888888887 7777754 66667888888877766542 112233333332 344433    2223333445777


Q ss_pred             ccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccce
Q 007616          291 KKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKN  369 (596)
Q Consensus       291 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~  369 (596)
                      +++|+.|++..+. +.....-.+..+++|+.|.+..|.+..+.+.+.. .+.++++|+|+.|+....-. ++-++.+|+.
T Consensus       220 L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  220 LPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ  297 (873)
T ss_pred             cchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhhh
Confidence            8999999998776 3333344567788999999999988777665443 57899999999988432222 6788999999


Q ss_pred             eeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC----CCCCCCEEEEeecc--C
Q 007616          370 LVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ----RFSSLERIVITSCE--Q  443 (596)
Q Consensus       370 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~----~l~~L~~L~l~~c~--~  443 (596)
                      |++++| .++.+..+.+.     ..++|++|+|++               ++++ .+++    .+..|++|.++.+.  .
T Consensus       298 L~lS~N-aI~rih~d~Ws-----ftqkL~~LdLs~---------------N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~  355 (873)
T KOG4194|consen  298 LDLSYN-AIQRIHIDSWS-----FTQKLKELDLSS---------------NRIT-RLDEGSFRVLSQLEELNLSHNSIDH  355 (873)
T ss_pred             hccchh-hhheeecchhh-----hcccceeEeccc---------------cccc-cCChhHHHHHHHhhhhcccccchHH
Confidence            999985 46666544433     278999999987               4444 4442    46888999998875  2


Q ss_pred             h-hccCCCCCCcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCC
Q 007616          444 L-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEF  522 (596)
Q Consensus       444 l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~  522 (596)
                      + ...|..+.+|++|+++.|.       ++.|-+-.         ..+-.-+++|++| .+.++.     +++||..   
T Consensus       356 l~e~af~~lssL~~LdLr~N~-------ls~~IEDa---------a~~f~gl~~LrkL-~l~gNq-----lk~I~kr---  410 (873)
T KOG4194|consen  356 LAEGAFVGLSSLHKLDLRSNE-------LSWCIEDA---------AVAFNGLPSLRKL-RLTGNQ-----LKSIPKR---  410 (873)
T ss_pred             HHhhHHHHhhhhhhhcCcCCe-------EEEEEecc---------hhhhccchhhhhe-eecCce-----eeecchh---
Confidence            2 4567789999999999986       33332211         0111117888999 888887     7777764   


Q ss_pred             CCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC-CCCccEEEEe
Q 007616          523 PQLESLSFVGNLTSLERLELPRCPVLRSFPENVL-PPSLVYLSIY  566 (596)
Q Consensus       523 ~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~-~~~L~~L~i~  566 (596)
                             .+.+|.+|++|++.++ -+.++....+ +-.|++|.+.
T Consensus       411 -------Afsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  411 -------AFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             -------hhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence                   6789999999999994 5777766554 3467766654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.84  E-value=9.8e-22  Score=192.71  Aligned_cols=329  Identities=20%  Similarity=0.198  Sum_probs=217.0

Q ss_pred             CCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccc-cccCCcccCCCCc
Q 007616          168 HLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAK  245 (596)
Q Consensus       168 ~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~  245 (596)
                      .-+.||+++|++..+ +..|.++++|+.+++.+| .++.+|...+...+|+.|++.+|. +..+-. ++.-++.|+.||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhh
Confidence            467799999999966 567899999999999999 999999977777889999999998 666543 3778888999987


Q ss_pred             EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616          246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR  325 (596)
Q Consensus       246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  325 (596)
                      +.+.+..      ++                        ...+....++++|.++.+.. ..-....+..+.+|..|.|+
T Consensus       157 SrN~is~------i~------------------------~~sfp~~~ni~~L~La~N~I-t~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  157 SRNLISE------IP------------------------KPSFPAKVNIKKLNLASNRI-TTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             hhchhhc------cc------------------------CCCCCCCCCceEEeeccccc-cccccccccccchheeeecc
Confidence            6543311      11                        01244456778888877763 23333445566788999999


Q ss_pred             ccCCCCCCCCCCCCCCCCccEEEEecCCCCCCC--CCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616          326 GYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTL--PSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE  403 (596)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l--~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  403 (596)
                      .|.++.+|..... .+++|+.|+|..|. +..+  -.+.++++|+.|.+..|.--+--...|++      +.+++.|+|.
T Consensus       206 rNrittLp~r~Fk-~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~------l~kme~l~L~  277 (873)
T KOG4194|consen  206 RNRITTLPQRSFK-RLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG------LEKMEHLNLE  277 (873)
T ss_pred             cCcccccCHHHhh-hcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceee------ecccceeecc
Confidence            9999888876552 58899999998887 3333  25778899999999886533333344444      7888888877


Q ss_pred             cCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--Ch-hccCCCCCCcceEEecCCcccceeeEeccccccccc
Q 007616          404 DMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEI  480 (596)
Q Consensus       404 ~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~  480 (596)
                      .. ++..+.          +| .--++++|+.|+++++.  ++ ++.+...++|++|++++|..-  .+.-...    ..
T Consensus       278 ~N-~l~~vn----------~g-~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~--~l~~~sf----~~  339 (873)
T KOG4194|consen  278 TN-RLQAVN----------EG-WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT--RLDEGSF----RV  339 (873)
T ss_pred             cc-hhhhhh----------cc-cccccchhhhhccchhhhheeecchhhhcccceeEeccccccc--cCChhHH----HH
Confidence            51 111110          01 11247778888887764  22 456666778888888777522  1000000    00


Q ss_pred             CCccccc--------cccccc---chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCc
Q 007616          481 LPQEIRI--------PNQESL---LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLR  549 (596)
Q Consensus       481 ~p~l~~l--------~~p~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~  549 (596)
                      +.+|+.+        ++-++.   +.+|++| +++++..    -..+.+..       . .+..+++|++|.+.+ ++++
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L-dLr~N~l----s~~IEDaa-------~-~f~gl~~LrkL~l~g-Nqlk  405 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKL-DLRSNEL----SWCIEDAA-------V-AFNGLPSLRKLRLTG-NQLK  405 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhh-cCcCCeE----EEEEecch-------h-hhccchhhhheeecC-ceee
Confidence            0011111        112222   6666777 6666653    22222210       0 456799999999999 7899


Q ss_pred             cCCCCCC--CCCccEEEEecCc
Q 007616          550 SFPENVL--PPSLVYLSIYLCP  569 (596)
Q Consensus       550 ~lp~~~~--~~~L~~L~i~~C~  569 (596)
                      ++|...+  +++|+.|++.+.+
T Consensus       406 ~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  406 SIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ecchhhhccCcccceecCCCCc
Confidence            9998655  7899999998875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=2.5e-23  Score=205.12  Aligned_cols=321  Identities=21%  Similarity=0.251  Sum_probs=207.8

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccc--cccCCcccCCCccceeecCCCCcccccccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRL--KKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~--~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      .+|+.++.+.+|+.|.+++|++..+-..++.|+.||.++++.| .+  ..+|..|-+|..|..||++.|. ++++|.++.
T Consensus        46 ~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE  123 (1255)
T KOG0444|consen   46 QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLE  123 (1255)
T ss_pred             hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hhhcchhhh
Confidence            6777777777777777777777777667777777777777777 33  3677788888888888888888 888888888


Q ss_pred             CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616          236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP  315 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  315 (596)
                      ..+++-.|+++++.+.+... .-+-+|+.|- .+.+++     +.-+.++..+..+.+|+.|.++.++ .....+..+.+
T Consensus       124 ~AKn~iVLNLS~N~IetIPn-~lfinLtDLL-fLDLS~-----NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPs  195 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYNNIETIPN-SLFINLTDLL-FLDLSN-----NRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPS  195 (1255)
T ss_pred             hhcCcEEEEcccCccccCCc-hHHHhhHhHh-hhcccc-----chhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCcc
Confidence            88888788777666544211 1122222222 222222     1223333445666777777777765 34445556666


Q ss_pred             CCCccEEEEeccC--CCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616          316 HYGLKELKVRGYG--GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE  392 (596)
Q Consensus       316 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  392 (596)
                      +.+|+.|++++.+  ...+|..+.  .+.+|..++++.|. +..+| .+-.+++|+.|+|++|. ++.+....      .
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld--~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~------~  265 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLD--DLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTE------G  265 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchh--hhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccH------H
Confidence            7777777777765  345666665  67777777777765 44444 46677778888887753 33332211      1


Q ss_pred             CCCCcceeecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeecc----ChhccCCCCCCcceEEecCCccc
Q 007616          393 PFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCE----QLLVSYTALPPLCELEIDGFSEL  465 (596)
Q Consensus       393 ~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~----~l~~~~~~l~~L~~L~l~~c~~l  465 (596)
                      ...+|++|.++.               +.|+ .+|.   .+++|+.|.+.++.    .+|++++.+.+|+.+...+|..-
T Consensus       266 ~W~~lEtLNlSr---------------NQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  266 EWENLETLNLSR---------------NQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             HHhhhhhhcccc---------------chhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence            145667666665               4455 5563   45666666665543    34666667777777777666521


Q ss_pred             ceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecC
Q 007616          466 FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELP  543 (596)
Q Consensus       466 l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~  543 (596)
                                            -+|+++  +..|+.| .+..++     +.++|+           .+.-++.|+.|+++
T Consensus       330 ----------------------lVPEglcRC~kL~kL-~L~~Nr-----LiTLPe-----------aIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  330 ----------------------LVPEGLCRCVKLQKL-KLDHNR-----LITLPE-----------AIHLLPDLKVLDLR  370 (1255)
T ss_pred             ----------------------cCchhhhhhHHHHHh-cccccc-----eeechh-----------hhhhcCCcceeecc
Confidence                                  356776  8888888 777666     556666           67778888888888


Q ss_pred             CCCCCccCCC
Q 007616          544 RCPVLRSFPE  553 (596)
Q Consensus       544 ~c~~l~~lp~  553 (596)
                      +++++..=|.
T Consensus       371 eNpnLVMPPK  380 (1255)
T KOG0444|consen  371 ENPNLVMPPK  380 (1255)
T ss_pred             CCcCccCCCC
Confidence            8888876554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=3.8e-22  Score=196.90  Aligned_cols=273  Identities=20%  Similarity=0.232  Sum_probs=178.5

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|..+-++..|.+|||++|++.+.|..+..-+++-+|+|++| .+..+|.. +-+|+.|-.||+++|. +..+|+.+..
T Consensus        94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RR  171 (1255)
T KOG0444|consen   94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRR  171 (1255)
T ss_pred             CCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHH
Confidence            5788888888888888888888888888888888888888888 88888866 5688888888888888 8888888888


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      |..|++|.++++.... ..++.+                             ..++.|+.|.++....+...++..+..+
T Consensus       172 L~~LqtL~Ls~NPL~h-fQLrQL-----------------------------PsmtsL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNH-FQLRQL-----------------------------PSMTSLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             HhhhhhhhcCCChhhH-HHHhcC-----------------------------ccchhhhhhhcccccchhhcCCCchhhh
Confidence            8888888876554311 112222                             2334444444544444444455555555


Q ss_pred             CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCC
Q 007616          317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPS  396 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~  396 (596)
                      .+|..++++.|....+|..+-  .+++|+.|++++|...+---..+.-.+|+.|+++.| .+..+|...+.      +++
T Consensus       222 ~NL~dvDlS~N~Lp~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcK------L~k  292 (1255)
T KOG0444|consen  222 HNLRDVDLSENNLPIVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-QLTVLPDAVCK------LTK  292 (1255)
T ss_pred             hhhhhccccccCCCcchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccc-hhccchHHHhh------hHH
Confidence            666666666666666665554  556666666666652221113344456666666663 35555555544      566


Q ss_pred             cceeecccCccccccceeEEecCCCCCCCCCCC---CCCCCEEEEeecc--ChhccCCCCCCcceEEecCCcccceeeEe
Q 007616          397 LETLCFEDMQEWEERIGLSIVRCPKLKGRLPQR---FSSLERIVITSCE--QLLVSYTALPPLCELEIDGFSELFLILQI  471 (596)
Q Consensus       397 L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~---l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~~ll~~l~~  471 (596)
                      |+.|.+.+.       +|.+      . -+|.+   +..|+.+...++.  -.|.++..++.|+.|.++.|..+      
T Consensus       293 L~kLy~n~N-------kL~F------e-GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi------  352 (1255)
T KOG0444|consen  293 LTKLYANNN-------KLTF------E-GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI------  352 (1255)
T ss_pred             HHHHHhccC-------cccc------c-CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee------
Confidence            665555441       1111      1 24433   3444444444433  23778889999999999887744      


Q ss_pred             cccccccccCCccccccccccc--chhhhcccccccccc
Q 007616          472 QGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISM  508 (596)
Q Consensus       472 ~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~  508 (596)
                                      .+|+.+  ++.|+.| ++..++.
T Consensus       353 ----------------TLPeaIHlL~~l~vL-DlreNpn  374 (1255)
T KOG0444|consen  353 ----------------TLPEAIHLLPDLKVL-DLRENPN  374 (1255)
T ss_pred             ----------------echhhhhhcCCccee-eccCCcC
Confidence                            578877  9999999 9999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=7.1e-22  Score=185.44  Aligned_cols=202  Identities=26%  Similarity=0.282  Sum_probs=106.0

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      ++|+.++.+..|+.|+.++|.+.++|++++.+..|+.|+..+| .+..+|++++++.+|..+++.+|. +..+|+..-++
T Consensus       105 ~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m  182 (565)
T KOG0472|consen  105 ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAM  182 (565)
T ss_pred             hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHH
Confidence            4444444444555555555554455544555555555544444 444444445555555555555444 44444443334


Q ss_pred             cccCCCCcEEeccCC-CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          238 TSLRTLAKFVVGKGN-CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      +.|++|+...+.... +..+..+..+..|.  ++-..+..+        ..+.+|..|.++++..+. ...-..+....+
T Consensus       183 ~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly--L~~Nki~~l--------Pef~gcs~L~Elh~g~N~-i~~lpae~~~~L  251 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLETLPPELGGLESLELLY--LRRNKIRFL--------PEFPGCSLLKELHVGENQ-IEMLPAEHLKHL  251 (565)
T ss_pred             HHHHhcccchhhhhcCChhhcchhhhHHHH--hhhcccccC--------CCCCccHHHHHHHhcccH-HHhhHHHHhccc
Confidence            445544433222211 11111222211110  000001111        135566666666665543 222222334467


Q ss_pred             CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      +++..||+..|....+|..+.  .+.+|.+|++++|. ++.+| .+|++ .|+.|.+.+++
T Consensus       252 ~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  252 NSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             ccceeeeccccccccCchHHH--HhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence            888888888888888888776  67788888888877 44455 78888 88888888865

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.75  E-value=2.9e-20  Score=191.99  Aligned_cols=358  Identities=25%  Similarity=0.294  Sum_probs=207.9

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      ..|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|++|++++|. ...+|.-+..+
T Consensus        59 ~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~l  136 (1081)
T KOG0618|consen   59 SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVL  136 (1081)
T ss_pred             cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchhc-cCCCchhHHhh
Confidence            4677778888888888888888888888888888888888888 788888888888888888888887 67777766666


Q ss_pred             cccCCCCcEEeccCC------------------CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616          238 TSLRTLAKFVVGKGN------------------CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP  299 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~------------------~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l  299 (596)
                      +.+..+...++....                  ...+.+...+..   .+.+..    +..   ....+..+.+|+.+..
T Consensus       137 t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~----N~~---~~~dls~~~~l~~l~c  206 (1081)
T KOG0618|consen  137 TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRY----NEM---EVLDLSNLANLEVLHC  206 (1081)
T ss_pred             hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeeccc----chh---hhhhhhhccchhhhhh
Confidence            666666554441111                  000111111111   011111    000   0122333333333332


Q ss_pred             --------------------cccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC
Q 007616          300 --------------------KWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP  359 (596)
Q Consensus       300 --------------------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~  359 (596)
                                          +.+...   ....-..+.+|+.++++.+....+|.|+.  .+.+|+.++..+|.. ..+|
T Consensus       207 ~rn~ls~l~~~g~~l~~L~a~~n~l~---~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~~~nle~l~~n~N~l-~~lp  280 (1081)
T KOG0618|consen  207 ERNQLSELEISGPSLTALYADHNPLT---TLDVHPVPLNLQYLDISHNNLSNLPEWIG--ACANLEALNANHNRL-VALP  280 (1081)
T ss_pred             hhcccceEEecCcchheeeeccCcce---eeccccccccceeeecchhhhhcchHHHH--hcccceEecccchhH-HhhH
Confidence                                222211   11112235788999999999999999988  788999999888875 4444


Q ss_pred             -CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccc---------eeEE--ecCCCCCCCCC
Q 007616          360 -SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERI---------GLSI--VRCPKLKGRLP  427 (596)
Q Consensus       360 -~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---------~l~l--~~c~~L~~~~p  427 (596)
                       .+....+|+.|.+..| .+++++....+      +.+|+.|+|... ++.++.         .+++  ..|.++. ..|
T Consensus       281 ~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp  351 (1081)
T KOG0618|consen  281 LRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLS-TLP  351 (1081)
T ss_pred             HHHhhhhhHHHHHhhhh-hhhhCCCcccc------cceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcccc-ccc
Confidence             4556667777777664 46666654433      677777777651 111111         0000  0112222 122


Q ss_pred             ----CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc---chhh
Q 007616          428 ----QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL---LDGL  497 (596)
Q Consensus       428 ----~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~---l~~L  497 (596)
                          ..++.|+.|.+.++.--   ...+.++++||.|++++|..-                      ++|.+-   +..|
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~----------------------~fpas~~~kle~L  409 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN----------------------SFPASKLRKLEEL  409 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc----------------------cCCHHHHhchHHh
Confidence                13344555555444311   233445666777777666411                      233333   4455


Q ss_pred             hccccccccccccccceecccCC-C----------CCCCCCCCCCCCCCCCCeeecCCCCCCccCCCC-CCC-CCccEEE
Q 007616          498 QKLSHITRISMVGSLLVYIAEGG-E----------FPQLESLSFVGNLTSLERLELPRCPVLRSFPEN-VLP-PSLVYLS  564 (596)
Q Consensus       498 ~~L~~l~~c~~~~~~l~~~~~~~-~----------~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~-~~L~~L~  564 (596)
                      ++| +++++.     ++.+|... .          -+.+..+|.+..+++|+.+|++. ++|..+-.. ..+ ++|++||
T Consensus       410 eeL-~LSGNk-----L~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd  482 (1081)
T KOG0618|consen  410 EEL-NLSGNK-----LTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD  482 (1081)
T ss_pred             HHH-hcccch-----hhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence            555 555554     55555331 1          23344455678899999999985 778775332 335 8999999


Q ss_pred             EecCchH
Q 007616          565 IYLCPYL  571 (596)
Q Consensus       565 i~~C~~L  571 (596)
                      ++|.+.+
T Consensus       483 lSGN~~l  489 (1081)
T KOG0618|consen  483 LSGNTRL  489 (1081)
T ss_pred             ccCCccc
Confidence            9999853

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.73  E-value=9.8e-21  Score=177.85  Aligned_cols=223  Identities=26%  Similarity=0.298  Sum_probs=153.4

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+-+.+.++..|.+|++++|++.++|++++.+..++.|+.++| .+..+|+.++.+.+|+.++.++|. ..++|++++.+
T Consensus        59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~-~~el~~~i~~~  136 (565)
T KOG0472|consen   59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNE-LKELPDSIGRL  136 (565)
T ss_pred             hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccc-eeecCchHHHH
Confidence            3456677888888899999988888888998888999999888 888888888888899999998888 88888888888


Q ss_pred             cccCCCCcEEeccCC-CCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          238 TSLRTLAKFVVGKGN-CSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~-~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      ..|+.|+..++...+ +..+..+..+..+    .+.+    +.. ...+...-.++.|++++...+  .-...++.++.+
T Consensus       137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l----~~~~----n~l-~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l  205 (565)
T KOG0472|consen  137 LDLEDLDATNNQISSLPEDMVNLSKLSKL----DLEG----NKL-KALPENHIAMKRLKHLDCNSN--LLETLPPELGGL  205 (565)
T ss_pred             hhhhhhhccccccccCchHHHHHHHHHHh----hccc----cch-hhCCHHHHHHHHHHhcccchh--hhhcCChhhcch
Confidence            888888766555433 2233333333322    1111    111 111122223667777766444  345566677777


Q ss_pred             CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616          317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF  394 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~  394 (596)
                      .+|..|++..|.+..+|++ +  ++..|++++++.|. ++.+|  ....++++..|+++++ .+++.|.+.+-      +
T Consensus       206 ~~L~~LyL~~Nki~~lPef-~--gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~cl------L  274 (565)
T KOG0472|consen  206 ESLELLYLRRNKIRFLPEF-P--GCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICL------L  274 (565)
T ss_pred             hhhHHHHhhhcccccCCCC-C--ccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCchHHHH------h
Confidence            7777888887777777743 3  56777777777766 55555  2446777888888774 56777776665      6


Q ss_pred             CCcceeeccc
Q 007616          395 PSLETLCFED  404 (596)
Q Consensus       395 ~~L~~L~l~~  404 (596)
                      .+|+.|++++
T Consensus       275 rsL~rLDlSN  284 (565)
T KOG0472|consen  275 RSLERLDLSN  284 (565)
T ss_pred             hhhhhhcccC
Confidence            7777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.59  E-value=3.5e-17  Score=169.57  Aligned_cols=86  Identities=23%  Similarity=0.303  Sum_probs=79.8

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      +..+|+.||+++|.+..+|..+..+.+|+.|+++.| .+..+|.+++++.+|++|.|.+|. ++.+|.++..+.+|++|+
T Consensus        43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLD  120 (1081)
T ss_pred             heeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccc
Confidence            344599999999999999999999999999999999 999999999999999999999998 999999999999999999


Q ss_pred             cEEeccCC
Q 007616          245 KFVVGKGN  252 (596)
Q Consensus       245 ~~~~~~~~  252 (596)
                      ++++....
T Consensus       121 lS~N~f~~  128 (1081)
T KOG0618|consen  121 LSFNHFGP  128 (1081)
T ss_pred             cchhccCC
Confidence            98877654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.56  E-value=4.9e-14  Score=150.74  Aligned_cols=257  Identities=23%  Similarity=0.210  Sum_probs=162.0

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF  246 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~  246 (596)
                      ..-..|+++++.++.+|+.+.  .+|+.|++.+| .++.+|..   +++|++|++++|. ++.+|..   .++|++|++.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeecc
Confidence            456788999998888888775  47899999988 78888763   5788999999887 7788753   3466666654


Q ss_pred             EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616          247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG  326 (596)
Q Consensus       247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  326 (596)
                      .+..      ..++.+                            ..+|+.|+++++....  .+.   .+++|+.|++++
T Consensus       271 ~N~L------~~Lp~l----------------------------p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~  311 (788)
T PRK15387        271 SNPL------THLPAL----------------------------PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSD  311 (788)
T ss_pred             CCch------hhhhhc----------------------------hhhcCEEECcCCcccc--ccc---cccccceeECCC
Confidence            3322      111110                            1234445554443211  111   236788888888


Q ss_pred             cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616          327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ  406 (596)
Q Consensus       327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (596)
                      |.+..+|..     ..+|+.|++++|. ++.+|.+.  ++|+.|++++|. +..+|..         .++|+.|.+++  
T Consensus       312 N~L~~Lp~l-----p~~L~~L~Ls~N~-L~~LP~lp--~~Lq~LdLS~N~-Ls~LP~l---------p~~L~~L~Ls~--  371 (788)
T PRK15387        312 NQLASLPAL-----PSELCKLWAYNNQ-LTSLPTLP--SGLQELSVSDNQ-LASLPTL---------PSELYKLWAYN--  371 (788)
T ss_pred             CccccCCCC-----cccccccccccCc-cccccccc--cccceEecCCCc-cCCCCCC---------Ccccceehhhc--
Confidence            877777653     2357778888776 34455422  478888888753 4444421         34566666554  


Q ss_pred             cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccc
Q 007616          407 EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIR  486 (596)
Q Consensus       407 ~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~  486 (596)
                                   +.+. .+|...++|+.|+++++. +.......++|+.|++++|...                     
T Consensus       372 -------------N~L~-~LP~l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N~Ls---------------------  415 (788)
T PRK15387        372 -------------NRLT-SLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLT---------------------  415 (788)
T ss_pred             -------------cccc-cCcccccccceEEecCCc-ccCCCCcccCCCEEEccCCcCC---------------------
Confidence                         3344 466556778888888764 2221122457888888887611                     


Q ss_pred             cccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCC
Q 007616          487 IPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPV  547 (596)
Q Consensus       487 l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~  547 (596)
                       .+|. .+.+|+.| ++++|.     ++.+|.           .+..+++|+.|++++|+-
T Consensus       416 -sIP~-l~~~L~~L-~Ls~Nq-----Lt~LP~-----------sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        416 -SLPM-LPSGLLSL-SVYRNQ-----LTRLPE-----------SLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             -CCCc-chhhhhhh-hhccCc-----ccccCh-----------HHhhccCCCeEECCCCCC
Confidence             1222 14567888 888776     556665           577888999999998653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.46  E-value=8.7e-15  Score=138.02  Aligned_cols=254  Identities=18%  Similarity=0.197  Sum_probs=161.1

Q ss_pred             ccCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc
Q 007616          132 RFSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD  209 (596)
Q Consensus       132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~  209 (596)
                      ..|.....+++..+.+.         .|| .+|+.+++||.|||++|.|+.+ |..|.++++|..|-+.+++.++++|.+
T Consensus        64 ~LP~~tveirLdqN~I~---------~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQIS---------SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             cCCCcceEEEeccCCcc---------cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            45566677777777666         455 5689999999999999999977 788999999999999886699999976


Q ss_pred             -ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCC--CCchhccchhhcc---ce-EEEcCcCCCCCHh
Q 007616          210 -IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNC--SGLKELRSLMHLQ---EK-LTISGLENVNDAE  281 (596)
Q Consensus       210 -i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~--~~l~~l~~L~~L~---~~-l~i~~~~~~~~~~  281 (596)
                       +++|..|+.|.+.-|. +.-++.. +..|++|..|.++.+.....  ..+..+..++.+.   +. ....++....+..
T Consensus       135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~  213 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL  213 (498)
T ss_pred             HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence             8899999999988887 6666655 77888888887776654331  1222332222221   10 0111111111111


Q ss_pred             hHHHHhcCCccc----------------------ccccc---ccccCCcchhhhhccCCCCCccEEEEeccCCCCCC-CC
Q 007616          282 DAKEAQLNGKKK----------------------LEALS---PKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFP-AW  335 (596)
Q Consensus       282 ~~~~~~l~~~~~----------------------L~~L~---l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~  335 (596)
                      ......+++...                      ++.+.   .+.+..........+..+++|++|++++|.++.+. .|
T Consensus       214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh
Confidence            111111111111                      11110   01111122222334677899999999999988774 45


Q ss_pred             CCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          336 LGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       336 ~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      +.  ....+++|.+..|+ ++.+.  .+.++..|+.|+|++|.-....+..|..      ..+|.+|.+-.
T Consensus       294 Fe--~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~------~~~l~~l~l~~  355 (498)
T KOG4237|consen  294 FE--GAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT------LFSLSTLNLLS  355 (498)
T ss_pred             hc--chhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccc------cceeeeeehcc
Confidence            54  67899999999988 44444  5778899999999997544444443322      56777777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.46  E-value=2e-14  Score=157.12  Aligned_cols=296  Identities=26%  Similarity=0.301  Sum_probs=194.5

Q ss_pred             ceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCC-CccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHT-AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL  213 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L  213 (596)
                      +++.+-+..+.. .      +..++.. |..++.||+|||++| .+..+|++|+.|.+||+|+++++ .+..+|.++++|
T Consensus       546 ~L~tLll~~n~~-~------l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~L  617 (889)
T KOG4658|consen  546 KLRTLLLQRNSD-W------LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNL  617 (889)
T ss_pred             ccceEEEeecch-h------hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHH
Confidence            466666666542 1      1144443 688999999999987 67899999999999999999999 899999999999


Q ss_pred             CccceeecCCCCccccccccccCCcccCCCCcEEec-cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcc
Q 007616          214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKK  292 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~  292 (596)
                      ++|.+|++..+..+..+|.....|++||+|.+.... ..+...+.++.+|..|+ .+.+....      ......+..+.
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~-~ls~~~~s------~~~~e~l~~~~  690 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE-NLSITISS------VLLLEDLLGMT  690 (889)
T ss_pred             HhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh-hheeecch------hHhHhhhhhhH
Confidence            999999999998777776667779999999987765 23345566666666665 44442211      11112233444


Q ss_pred             cccccccccc--CCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCC---CC-CCCccEEEEecCCCCCCCCCCCCCC
Q 007616          293 KLEALSPKWG--NKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQ---SS-FENLVVLRFKNCNQCTTLPSVGHLP  365 (596)
Q Consensus       293 ~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~---~~-~~~L~~L~l~~~~~~~~l~~l~~l~  365 (596)
                      .|..+...-.  ..........+..+.+|+.|.+.++....... |...   .. |+++..+.+.+|.....+.+....|
T Consensus       691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~  770 (889)
T KOG4658|consen  691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAP  770 (889)
T ss_pred             HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccC
Confidence            4443322211  01223344556678889999999887654322 2111   12 5567777777887777766666678


Q ss_pred             ccceeeccCccCceEeCccccCC----CCCCCCCCccee-ecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEee
Q 007616          366 SLKNLVIKGMAKVKSVGLEFCGN----YCSEPFPSLETL-CFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITS  440 (596)
Q Consensus       366 ~L~~L~L~~~~~l~~~~~~~~~~----~~~~~~~~L~~L-~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~  440 (596)
                      +|+.|.+.+|..++.+.......    .....|+++..+ .+.+.++++++.            ..|-.++.|+.+.+..
T Consensus       771 ~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~------------~~~l~~~~l~~~~ve~  838 (889)
T KOG4658|consen  771 HLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY------------WLPLSFLKLEELIVEE  838 (889)
T ss_pred             cccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE------------ecccCccchhheehhc
Confidence            99999999988777664332211    012345566666 455555555443            4444466688888888


Q ss_pred             ccChhccCCCCCCcceEEecCC
Q 007616          441 CEQLLVSYTALPPLCELEIDGF  462 (596)
Q Consensus       441 c~~l~~~~~~l~~L~~L~l~~c  462 (596)
                      |+++    ..+|.+.++.+.+|
T Consensus       839 ~p~l----~~~P~~~~~~i~~~  856 (889)
T KOG4658|consen  839 CPKL----GKLPLLSTLTIVGC  856 (889)
T ss_pred             Cccc----ccCccccccceecc
Confidence            7765    44666666677665

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.45  E-value=1.3e-15  Score=127.19  Aligned_cols=155  Identities=20%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  243 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L  243 (596)
                      -.+.+...|.+++|+++.+|+.|..+.+|+.|++.+| .+.++|..++.+++|++|+++-|. +..+|.++|.++.|+.|
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl  107 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL  107 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence            3567888899999999999999999999999999999 899999999999999999999988 88999999999999999


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK  323 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  323 (596)
                      ++.++......-.                             .++..+..|+.|.++.+  .....+..++.+++|+.|.
T Consensus       108 dltynnl~e~~lp-----------------------------gnff~m~tlralyl~dn--dfe~lp~dvg~lt~lqil~  156 (264)
T KOG0617|consen  108 DLTYNNLNENSLP-----------------------------GNFFYMTTLRALYLGDN--DFEILPPDVGKLTNLQILS  156 (264)
T ss_pred             hccccccccccCC-----------------------------cchhHHHHHHHHHhcCC--CcccCChhhhhhcceeEEe
Confidence            9876654322111                             12333444555555544  2334455566667777777


Q ss_pred             EeccCCCCCCCCCCCCCCCCccEEEEecCC
Q 007616          324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCN  353 (596)
Q Consensus       324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  353 (596)
                      +..|....+|..++  .+..|++|.+.+|.
T Consensus       157 lrdndll~lpkeig--~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  157 LRDNDLLSLPKEIG--DLTRLRELHIQGNR  184 (264)
T ss_pred             eccCchhhCcHHHH--HHHHHHHHhcccce
Confidence            77777667776666  56677777777766

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.43  E-value=5.8e-13  Score=142.58  Aligned_cols=242  Identities=22%  Similarity=0.180  Sum_probs=158.6

Q ss_pred             cccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      +..+|+.+.  .+|+.|++++|+++.+|..   +++|++|++++| .++.+|..   .++|+.|++++|. +..+|... 
T Consensus       213 LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp-  281 (788)
T PRK15387        213 LTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP-LTHLPALP-  281 (788)
T ss_pred             CCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-hhhhhhch-
Confidence            346888775  4899999999999999863   589999999999 88888863   4688899999998 77877633 


Q ss_pred             CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616          236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP  315 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  315 (596)
                        ++|+.|++.++.......  .   +..|+ .+.+++. .+....    .   ...+|+.|+++.+....  ++ .  .
T Consensus       282 --~~L~~L~Ls~N~Lt~LP~--~---p~~L~-~LdLS~N-~L~~Lp----~---lp~~L~~L~Ls~N~L~~--LP-~--l  340 (788)
T PRK15387        282 --SGLCKLWIFGNQLTSLPV--L---PPGLQ-ELSVSDN-QLASLP----A---LPSELCKLWAYNNQLTS--LP-T--L  340 (788)
T ss_pred             --hhcCEEECcCCccccccc--c---ccccc-eeECCCC-ccccCC----C---CcccccccccccCcccc--cc-c--c
Confidence              456666665544332111  1   12233 4444331 111110    0   12346667766654221  11 1  1


Q ss_pred             CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCC
Q 007616          316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFP  395 (596)
Q Consensus       316 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~  395 (596)
                      +.+|+.|++++|.+..+|..     ..+|+.|++++|. +..+|.+  .++|+.|++++|. +..++..         .+
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~-L~~LP~l--~~~L~~LdLs~N~-Lt~LP~l---------~s  402 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNR-LTSLPAL--PSGLKELIVSGNR-LTSLPVL---------PS  402 (788)
T ss_pred             ccccceEecCCCccCCCCCC-----Ccccceehhhccc-cccCccc--ccccceEEecCCc-ccCCCCc---------cc
Confidence            24788899988888877753     3467888888776 4456643  3578888888764 4444321         45


Q ss_pred             CcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616          396 SLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       396 ~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~  463 (596)
                      +|+.|++++               +.++ .+|..+.+|+.|+++++.  .++..+..+++|+.|++++|+
T Consensus       403 ~L~~LdLS~---------------N~Ls-sIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        403 ELKELMVSG---------------NRLT-SLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCEEEccC---------------CcCC-CCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            678777776               3445 466656678888888765  456777889999999999987

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.43  E-value=7.6e-13  Score=142.59  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc
Q 007616          168 HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       168 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      +...|+++++.++.+|..+.  ++|+.|++++| .+..+|..+.  .+|++|++++|. +..+|..
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~  238 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT  238 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChh
Confidence            34555555555555555442  35556666655 5555555443  356666666555 5555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=6.1e-13  Score=143.32  Aligned_cols=160  Identities=22%  Similarity=0.258  Sum_probs=101.9

Q ss_pred             CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCc
Q 007616          318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSL  397 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L  397 (596)
                      +|+.|++++|....+|..+.    ++|+.|++++|. ++.+|.. -.++|+.|++++|. +..++...        +++|
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~----~sL~~L~Ls~N~-Lt~LP~~-lp~sL~~L~Ls~N~-Lt~LP~~l--------~~sL  327 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP----EELRYLSVYDNS-IRTLPAH-LPSGITHLNVQSNS-LTALPETL--------PPGL  327 (754)
T ss_pred             CCCEEECcCCccCccccccC----CCCcEEECCCCc-cccCccc-chhhHHHHHhcCCc-cccCCccc--------cccc
Confidence            45566666666666665432    489999999986 4555521 12578999998864 44444322        4678


Q ss_pred             ceeecccCccccccceeEEecCCCCCCCCCC-CCCCCCEEEEeeccC--hhccCCCCCCcceEEecCCcccceeeEeccc
Q 007616          398 ETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ-RFSSLERIVITSCEQ--LLVSYTALPPLCELEIDGFSELFLILQIQGW  474 (596)
Q Consensus       398 ~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~-~l~~L~~L~l~~c~~--l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~  474 (596)
                      +.|.+.++               .++ .+|. ..++|+.|++++|.-  ++..+  .++|+.|++++|...         
T Consensus       328 ~~L~Ls~N---------------~Lt-~LP~~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt---------  380 (754)
T PRK15370        328 KTLEAGEN---------------ALT-SLPASLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT---------  380 (754)
T ss_pred             eeccccCC---------------ccc-cCChhhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC---------
Confidence            88877763               233 3443 236899999998852  22222  367889999888621         


Q ss_pred             ccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCC-CCCCCCCCCeeecCCCC
Q 007616          475 RSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS-FVGNLTSLERLELPRCP  546 (596)
Q Consensus       475 ~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~-~~~~l~~L~~L~l~~c~  546 (596)
                                   .+|..+..+|+.| ++++|.     +..+|..        ++ ....++++..|++.+++
T Consensus       381 -------------~LP~~l~~sL~~L-dLs~N~-----L~~LP~s--------l~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        381 -------------NLPENLPAALQIM-QASRNN-----LVRLPES--------LPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -------------CCCHhHHHHHHHH-hhccCC-----cccCchh--------HHHHhhcCCCccEEEeeCCC
Confidence                         3555556678899 988877     5555541        11 23345788899998865

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=4.6e-14  Score=117.95  Aligned_cols=146  Identities=27%  Similarity=0.274  Sum_probs=110.8

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcc-ccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLL-EEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l-~~lp~~l~~  236 (596)
                      .+|+.+..+++|++|++++|+|+++|.+++.+++|+.|++.-| .+..+|.++|.++.|+.||+.+|..- ..+|..+..
T Consensus        47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~  125 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY  125 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence            6899999999999999999999999999999999999999998 88999999999999999999998732 237877888


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      |+.|+.|++..++..-                               ++..++++++|+.|.+..+.  -...+..++.+
T Consensus       126 m~tlralyl~dndfe~-------------------------------lp~dvg~lt~lqil~lrdnd--ll~lpkeig~l  172 (264)
T KOG0617|consen  126 MTTLRALYLGDNDFEI-------------------------------LPPDVGKLTNLQILSLRDND--LLSLPKEIGDL  172 (264)
T ss_pred             HHHHHHHHhcCCCccc-------------------------------CChhhhhhcceeEEeeccCc--hhhCcHHHHHH
Confidence            8888888764443211                               11124444555555554442  23345556667


Q ss_pred             CCccEEEEeccCCCCCCCCCC
Q 007616          317 YGLKELKVRGYGGTKFPAWLG  337 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~  337 (596)
                      ..|++|++.+|..+.+|+.++
T Consensus       173 t~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             HHHHHHhcccceeeecChhhh
Confidence            778888888888777776544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.24  E-value=4e-13  Score=126.95  Aligned_cols=106  Identities=24%  Similarity=0.291  Sum_probs=78.1

Q ss_pred             cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      |.++|..+.  ..-..++|..|.|+.+|+ .|+.+++||.|||+.| .+..| |..|..+.+|..|-+.+++.++++|.+
T Consensus        58 L~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   58 LTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             cccCcccCC--CcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            335665542  245678999999999985 7899999999999999 55544 677999999999888886569999988


Q ss_pred             -ccCCcccCCCCcEEeccCCCCCchhccchhhc
Q 007616          234 -IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHL  265 (596)
Q Consensus       234 -l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L  265 (596)
                       ++.|.+|+-|.+..+.. .+..-..+..+..+
T Consensus       135 ~F~gL~slqrLllNan~i-~Cir~~al~dL~~l  166 (498)
T KOG4237|consen  135 AFGGLSSLQRLLLNANHI-NCIRQDALRDLPSL  166 (498)
T ss_pred             HhhhHHHHHHHhcChhhh-cchhHHHHHHhhhc
Confidence             89999999887654433 23223334444444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.98  E-value=8.3e-11  Score=117.38  Aligned_cols=90  Identities=17%  Similarity=0.109  Sum_probs=58.9

Q ss_pred             CcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccc------cccCCcccCCCccceeecCCCCcc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRL------KKLFPDIGNLVNLRHLKDSHSNLL  227 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~------~~lp~~i~~L~~L~~L~l~~~~~l  227 (596)
                      .+..+..+.+|++|+++++.++     .++..+...++|++|+++++...      ..++..++++++|+.|++++|...
T Consensus        15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            3444566777999999999884     45666777888999999887322      223345667888888888888743


Q ss_pred             ccccccccCCcc---cCCCCcEEe
Q 007616          228 EEMPLRIGKLTS---LRTLAKFVV  248 (596)
Q Consensus       228 ~~lp~~l~~l~~---L~~L~~~~~  248 (596)
                      ...+..+..+.+   |++|++.++
T Consensus        95 ~~~~~~~~~l~~~~~L~~L~ls~~  118 (319)
T cd00116          95 PDGCGVLESLLRSSSLQELKLNNN  118 (319)
T ss_pred             hhHHHHHHHHhccCcccEEEeeCC
Confidence            344444444433   666655443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=7.8e-11  Score=117.59  Aligned_cols=91  Identities=19%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             cCcccccccCCCcEEeecCCCccc-------cccccccCCcCcEEEccccccccccCCcccCCCc---cceeecCCCCcc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEV-------LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN---LRHLKDSHSNLL  227 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~-------lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~---L~~L~l~~~~~l  227 (596)
                      .++..+...+.++.|+++++.+..       ++..+..+++|+.|++++|......+..+..+.+   |++|++++|. +
T Consensus        42 ~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~  120 (319)
T cd00116          42 ALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-L  120 (319)
T ss_pred             HHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-c
Confidence            456666777788899988876652       3455677889999999888443344444555544   9999998887 4


Q ss_pred             cc-----ccccccCC-cccCCCCcEEec
Q 007616          228 EE-----MPLRIGKL-TSLRTLAKFVVG  249 (596)
Q Consensus       228 ~~-----lp~~l~~l-~~L~~L~~~~~~  249 (596)
                      ..     +...+..+ ++|+.|++.++.
T Consensus       121 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116         121 GDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             chHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            32     22334455 666776655444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.73  E-value=2.6e-09  Score=93.90  Aligned_cols=104  Identities=23%  Similarity=0.281  Sum_probs=30.5

Q ss_pred             cccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccccc-CCcccC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG-KLTSLR  241 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~-~l~~L~  241 (596)
                      .+..++|.|+|++|.|+.+. .++ .+.+|+.|++++| .++.++ ++..+++|+.|++++|. ++.+++++. .+++|+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence            34446777788887777663 344 4677778888877 677663 57777778888887777 777655543 467777


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEc
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTIS  272 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~  272 (596)
                      +|++.++.......+..+..++.|+ .+.+.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~-~L~L~  121 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLR-VLSLE  121 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT---EEE-T
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcc-eeecc
Confidence            7776555554444444444444444 44443

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.66  E-value=7.1e-09  Score=101.63  Aligned_cols=54  Identities=31%  Similarity=0.656  Sum_probs=48.2

Q ss_pred             hhhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCC
Q 007616           14 LFKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHE   67 (596)
Q Consensus        14 ~~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~   67 (596)
                      ....++.++++||+.||+++|.||+|||+||+++.|+++.|+++|+++||+...
T Consensus       232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            468899999999999999999999999999999999999999999999999753

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.64  E-value=2.4e-09  Score=106.44  Aligned_cols=84  Identities=35%  Similarity=0.573  Sum_probs=45.1

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+|..++.+..|.+|+|+.|++..+|..++.|+ |+.|.+++| +++.+|+.++.+..|..||.+.|. +..+|..++.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l  188 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYL  188 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhH
Confidence            455555555555555555555555555555443 555555555 555555555555555555555555 55555555555


Q ss_pred             cccCCCC
Q 007616          238 TSLRTLA  244 (596)
Q Consensus       238 ~~L~~L~  244 (596)
                      .+|+.|.
T Consensus       189 ~slr~l~  195 (722)
T KOG0532|consen  189 TSLRDLN  195 (722)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.64  E-value=7.6e-10  Score=106.01  Aligned_cols=131  Identities=18%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             CCCCCCCEEEEeeccChh-----ccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc-chhhhccc
Q 007616          428 QRFSSLERIVITSCEQLL-----VSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL-LDGLQKLS  501 (596)
Q Consensus       428 ~~l~~L~~L~l~~c~~l~-----~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~-l~~L~~L~  501 (596)
                      ++.++|+.+.++.|.++.     ..-.+.+.|+.+++.+|...... .          +.       ..+. ++.|+.| 
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-t----------L~-------sls~~C~~lr~l-  377 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-T----------LA-------SLSRNCPRLRVL-  377 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-h----------Hh-------hhccCCchhccC-
Confidence            456777777777777552     12234667777777777543211 0          00       0001 6777777 


Q ss_pred             cccccccccccceecccCCCCCCCCCCC-CCCCCCCCCeeecCCCCCCccCCC--CCCCCCccEEEEecCchHHHhhccC
Q 007616          502 HITRISMVGSLLVYIAEGGEFPQLESLS-FVGNLTSLERLELPRCPVLRSFPE--NVLPPSLVYLSIYLCPYLEERCKKD  578 (596)
Q Consensus       502 ~l~~c~~~~~~l~~~~~~~~~~~L~~l~-~~~~l~~L~~L~l~~c~~l~~lp~--~~~~~~L~~L~i~~C~~L~~~~~~~  578 (596)
                      .++.|..    ++.-       .+..+. +-..+..|+.+.+.+||.++.---  ....++|+.+++++|...++--.+.
T Consensus       378 slshce~----itD~-------gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  378 SLSHCEL----ITDE-------GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             Chhhhhh----hhhh-------hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence            7887775    3221       001111 345677888899999987765322  1235788889999998775433221


Q ss_pred             CCCCccccCCccceee
Q 007616          579 KGEYWHLVADIPKFQT  594 (596)
Q Consensus       579 ~~~~~~~i~~i~~~~~  594 (596)
                            .-.|.|+++|
T Consensus       447 ------~~~~lp~i~v  456 (483)
T KOG4341|consen  447 ------FATHLPNIKV  456 (483)
T ss_pred             ------HHhhCcccee
Confidence                  2356666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.59  E-value=2.5e-08  Score=102.54  Aligned_cols=180  Identities=23%  Similarity=0.292  Sum_probs=107.0

Q ss_pred             ccccCCCcEEeecCCCccccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  241 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~  241 (596)
                      +..++.++.|++.++.++.+|+..+.+. +|+.|++++| .+..+|..++.+++|+.|++++|. +.++|...+.+++|+
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            3455677788888888888777777774 7888888887 777777677788888888888887 777777666777777


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE  321 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  321 (596)
                      .|++.++.........                               .....|+.+.++.+.  ....+..+....++..
T Consensus       190 ~L~ls~N~i~~l~~~~-------------------------------~~~~~L~~l~~~~N~--~~~~~~~~~~~~~l~~  236 (394)
T COG4886         190 NLDLSGNKISDLPPEI-------------------------------ELLSALEELDLSNNS--IIELLSSLSNLKNLSG  236 (394)
T ss_pred             heeccCCccccCchhh-------------------------------hhhhhhhhhhhcCCc--ceecchhhhhcccccc
Confidence            7766444332211110                               111223333333331  1112222333444555


Q ss_pred             EEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceE
Q 007616          322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKS  380 (596)
Q Consensus       322 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~  380 (596)
                      +.+.++....++..+.  .+++++.|++++|. +..++.++.+.+++.|+++++.....
T Consensus       237 l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         237 LELSNNKLEDLPESIG--NLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccCCceeeeccchhc--cccccceecccccc-ccccccccccCccCEEeccCcccccc
Confidence            5555555544455554  55667777777666 44444466677777777776554433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.1e-08  Score=93.88  Aligned_cols=136  Identities=22%  Similarity=0.156  Sum_probs=96.7

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  243 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L  243 (596)
                      .-.+.|..+||++|.|+.+..++.-.+.++.|++++| .+..+ .++..|.+|++||+++|. +..+-..-.++-+.++|
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTL  357 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeee-hhhhhcccceEeecccch-hHhhhhhHhhhcCEeee
Confidence            3456789999999999999999999999999999999 67666 348889999999999998 66664444456666777


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK  323 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  323 (596)
                      .+..+.      +..+..                          ++++.+|..|++..++....+....++++|.|+.+.
T Consensus       358 ~La~N~------iE~LSG--------------------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  358 KLAQNK------IETLSG--------------------------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ehhhhh------Hhhhhh--------------------------hHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            654332      222222                          333445666677666655555566677777777777


Q ss_pred             EeccCCCCCCC
Q 007616          324 VRGYGGTKFPA  334 (596)
Q Consensus       324 l~~~~~~~~~~  334 (596)
                      +.+|....++.
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            77777655554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.48  E-value=1.2e-07  Score=97.52  Aligned_cols=164  Identities=27%  Similarity=0.309  Sum_probs=122.6

Q ss_pred             cCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+.++|...+.+++|+.|++++|. +..+|..++.
T Consensus       130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~  207 (394)
T COG4886         130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIEL  207 (394)
T ss_pred             cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCc-cccCchhhhh
Confidence            6777777775 999999999999999888999999999999999 999999888899999999999999 9999998877


Q ss_pred             CcccCCCCcEEec-cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC
Q 007616          237 LTSLRTLAKFVVG-KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP  315 (596)
Q Consensus       237 l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~  315 (596)
                      +..|++|.+.++. ......+.                                .+.++..+.+..+.  ....+..+..
T Consensus       208 ~~~L~~l~~~~N~~~~~~~~~~--------------------------------~~~~l~~l~l~~n~--~~~~~~~~~~  253 (394)
T COG4886         208 LSALEELDLSNNSIIELLSSLS--------------------------------NLKNLSGLELSNNK--LEDLPESIGN  253 (394)
T ss_pred             hhhhhhhhhcCCcceecchhhh--------------------------------hcccccccccCCce--eeeccchhcc
Confidence            8889999876553 11111111                                12222222222221  1111344556


Q ss_pred             CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCC
Q 007616          316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS  360 (596)
Q Consensus       316 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~  360 (596)
                      +++++.|++++|....++. ++  .+.+++.|+++++.....++.
T Consensus       254 l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         254 LSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccceecccccccccccc-cc--ccCccCEEeccCccccccchh
Confidence            6779999999998888876 44  688999999999886666553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.3e-08  Score=98.27  Aligned_cols=61  Identities=23%  Similarity=0.238  Sum_probs=33.4

Q ss_pred             cccCCCcEEeecCCCccccc--cccccCCcCcEEEcccccccc---ccCCcccCCCccceeecCCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLK---KLFPDIGNLVNLRHLKDSHSN  225 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~L~~L~l~~~~  225 (596)
                      .++++||...|.++.+...+  .....|++++.|||+.| .+.   .+-.....|++|+.|+++.|.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr  183 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR  183 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc
Confidence            45566666666666665444  24455666666666665 221   222224456666666666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.47  E-value=1.8e-07  Score=67.39  Aligned_cols=58  Identities=38%  Similarity=0.444  Sum_probs=50.5

Q ss_pred             CCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCC
Q 007616          167 KHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSN  225 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~  225 (596)
                      ++|++|++++|+++.+|+ .+..+++|++|++++| .+..+|+ .+.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999999884 7789999999999988 7777765 58999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=98.47  E-value=1.8e-07  Score=100.80  Aligned_cols=88  Identities=25%  Similarity=0.379  Sum_probs=74.6

Q ss_pred             cCcccccccCCCcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|..++.+++|+.|+|++|.+. .+|..++.+++|++|++++|.....+|..++++++|++|++++|...+.+|..++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence            78889999999999999999998 78889999999999999999666688999999999999999999977789988765


Q ss_pred             C-cccCCCCc
Q 007616          237 L-TSLRTLAK  245 (596)
Q Consensus       237 l-~~L~~L~~  245 (596)
                      + .++..+++
T Consensus       513 ~~~~~~~l~~  522 (623)
T PLN03150        513 RLLHRASFNF  522 (623)
T ss_pred             ccccCceEEe
Confidence            3 34444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=6.1e-09  Score=95.47  Aligned_cols=158  Identities=18%  Similarity=0.103  Sum_probs=85.6

Q ss_pred             CCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCC
Q 007616          168 HLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTL  243 (596)
Q Consensus       168 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L  243 (596)
                      .|++|||+...|+  .+-..++.|.+|+.|.+.+...-..+-..|.+-.+|+.|+++.|.-+++....  +.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            5888888888777  45455677888888888877433444455777788888888888755553322  5677777777


Q ss_pred             CcEEeccCCCCCchhccch-hhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          244 AKFVVGKGNCSGLKELRSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L-~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      +++-+.......-....+. ..+. .+.++++...-.. ..+..-...+++|.+|+++.+.......+..+..++.|++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~-~LNlsG~rrnl~~-sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLT-QLNLSGYRRNLQK-SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhh-hhhhhhhHhhhhh-hHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            7655544332210001110 0011 2233332221111 11222234566666666665554444445555555555555


Q ss_pred             EEecc
Q 007616          323 KVRGY  327 (596)
Q Consensus       323 ~l~~~  327 (596)
                      .++.|
T Consensus       344 SlsRC  348 (419)
T KOG2120|consen  344 SLSRC  348 (419)
T ss_pred             ehhhh
Confidence            55544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.43  E-value=2.7e-08  Score=99.13  Aligned_cols=178  Identities=23%  Similarity=0.240  Sum_probs=130.8

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      ++|..+..+..|..+.+.+|.+..+|..++.+..|.+||++.| .+..+|..+..| -|+.|-+++|. ++.+|++++-+
T Consensus        89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNNk-l~~lp~~ig~~  165 (722)
T KOG0532|consen   89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNNK-LTSLPEEIGLL  165 (722)
T ss_pred             cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecCc-cccCCcccccc
Confidence            7899999999999999999999999999999999999999999 899999988877 58999999998 99999999988


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY  317 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (596)
                      ..|..|+.+.+...+  ....                             ++++..|+.|.+..+.  -...++.+.. -
T Consensus       166 ~tl~~ld~s~nei~s--lpsq-----------------------------l~~l~slr~l~vrRn~--l~~lp~El~~-L  211 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQS--LPSQ-----------------------------LGYLTSLRDLNVRRNH--LEDLPEELCS-L  211 (722)
T ss_pred             hhHHHhhhhhhhhhh--chHH-----------------------------hhhHHHHHHHHHhhhh--hhhCCHHHhC-C
Confidence            899999876554322  1111                             2333344444443332  2223334442 2


Q ss_pred             CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC----CCCCCCccceeeccCc
Q 007616          318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP----SVGHLPSLKNLVIKGM  375 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~----~l~~l~~L~~L~L~~~  375 (596)
                      .|..||++.|++..+|..+.  .+..|++|.|.+|+ +...|    .-|...-.++|+..-|
T Consensus       212 pLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            47788888888888887777  78888888888887 33333    2344455566666655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.38  E-value=3.2e-09  Score=101.85  Aligned_cols=62  Identities=19%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             CCcEEeecCCCc---cccccccccCCcCcEEEccccccccccC--CcccCCCccceeecCCCCcccc
Q 007616          168 HLRYLDFSHTAI---EVLSESVSTLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEE  229 (596)
Q Consensus       168 ~L~~L~L~~~~i---~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~  229 (596)
                      .||.|.++++.-   +.+-.....++++++|++.+|..+++--  .--..+.+|++|++..|..++.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~  205 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD  205 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence            466666666632   2333344567777777777775444211  1123456677777766654444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.34  E-value=1.5e-07  Score=82.80  Aligned_cols=102  Identities=26%  Similarity=0.342  Sum_probs=38.8

Q ss_pred             ceeEEEEecccccccccccccccCccccc-ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcc-cCC
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPNDIA-ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNL  213 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L  213 (596)
                      +.+.|.+.++.+..+.          .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++| .++.+++.+ ..+
T Consensus        20 ~~~~L~L~~n~I~~Ie----------~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~l   87 (175)
T PF14580_consen   20 KLRELNLRGNQISTIE----------NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNL   87 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-
T ss_pred             cccccccccccccccc----------chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhC
Confidence            3456666666554332          244 5788999999999999885 4788999999999999 788886555 368


Q ss_pred             CccceeecCCCCccccccc--cccCCcccCCCCcEEecc
Q 007616          214 VNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~~  250 (596)
                      ++|++|++++|. +.++-.  .+..+++|+.|++.++..
T Consensus        88 p~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   88 PNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             CcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcc
Confidence            999999999998 666533  366677888887755554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.8e-07  Score=87.66  Aligned_cols=65  Identities=23%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             ccCCcCcEEEccccccccccCC--cccCCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCC
Q 007616          187 STLYNLQTLILEYCYRLKKLFP--DIGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGN  252 (596)
Q Consensus       187 ~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~  252 (596)
                      .++.+|+...|+++ .+...+.  ....+++++.||++.|-+-..  +-.-...|++|+.|+++.+....
T Consensus       118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence            46889999999998 6766663  577899999999999862222  22336678999999887766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.5e-08  Score=92.98  Aligned_cols=157  Identities=18%  Similarity=0.193  Sum_probs=91.8

Q ss_pred             cCcEEEcccccccc--ccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccce
Q 007616          191 NLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEK  268 (596)
Q Consensus       191 ~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~  268 (596)
                      .||+|||+.. .++  .+-.-+..+.+|+.|.+.++..-..+-..+.+=.+|+.|+++                      
T Consensus       186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls----------------------  242 (419)
T KOG2120|consen  186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS----------------------  242 (419)
T ss_pred             hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccc----------------------
Confidence            3566666654 222  111223445556666666555333333344454555555433                      


Q ss_pred             EEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCC-CCCccEEEEeccCC----CCCCCCCCCCCCCC
Q 007616          269 LTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP-HYGLKELKVRGYGG----TKFPAWLGQSSFEN  343 (596)
Q Consensus       269 l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~----~~~~~~~~~~~~~~  343 (596)
                          .+.+..  .......+..|+.|.+|.++||......+-..+.. -++|..|+++|+..    ..+.....  .+++
T Consensus       243 ----m~sG~t--~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~--rcp~  314 (419)
T KOG2120|consen  243 ----MCSGFT--ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR--RCPN  314 (419)
T ss_pred             ----cccccc--hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH--hCCc
Confidence                222222  23344457788999999999998654443222222 47888999998752    12222222  6788


Q ss_pred             ccEEEEecCCCCCC--CCCCCCCCccceeeccCccCc
Q 007616          344 LVVLRFKNCNQCTT--LPSVGHLPSLKNLVIKGMAKV  378 (596)
Q Consensus       344 L~~L~l~~~~~~~~--l~~l~~l~~L~~L~L~~~~~l  378 (596)
                      |..|++++|..++.  +..+.+++.|++|.++.|..+
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence            99999998886654  225667888999999888754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.17  E-value=1.9e-06  Score=56.61  Aligned_cols=40  Identities=35%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccC
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF  207 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp  207 (596)
                      ++|++|++++|.|+.+|+.+++|++|++|++++| .+.++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            4678888888888888777788888888888887 565553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.09  E-value=1.5e-06  Score=62.55  Aligned_cols=57  Identities=33%  Similarity=0.399  Sum_probs=49.2

Q ss_pred             CcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEe
Q 007616          190 YNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVV  248 (596)
Q Consensus       190 ~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~  248 (596)
                      ++|++|++++| .+..+|. .+.++++|++|++++|. ++.+|++ +..+++|++|++.++
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence            57999999999 8888885 58899999999999999 8888865 889999999986443

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.04  E-value=1.3e-06  Score=80.57  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=77.7

Q ss_pred             HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCC
Q 007616          285 EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHL  364 (596)
Q Consensus       285 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l  364 (596)
                      ..+..-.+.++.|+++.+.....   ..+..+++|+.|++++|....+.-|-.  .+.+++.|.+++|. ++++..++++
T Consensus       300 DESvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~-iE~LSGL~KL  373 (490)
T KOG1259|consen  300 DESVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNK-IETLSGLRKL  373 (490)
T ss_pred             hhhhhhccceeEEeccccceeee---hhhhhcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhh-HhhhhhhHhh
Confidence            34455667888888888764333   336667889999999988777777765  67889999999876 6777788888


Q ss_pred             CccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616          365 PSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM  405 (596)
Q Consensus       365 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  405 (596)
                      -+|.+|++++|. ++.+..-    ..++.+|.|+.+.+.+.
T Consensus       374 YSLvnLDl~~N~-Ie~ldeV----~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  374 YSLVNLDLSSNQ-IEELDEV----NHIGNLPCLETLRLTGN  409 (490)
T ss_pred             hhheeccccccc-hhhHHHh----cccccccHHHHHhhcCC
Confidence            899999998863 3333211    12334788887777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=3.6e-05  Score=76.39  Aligned_cols=63  Identities=19%  Similarity=0.299  Sum_probs=41.5

Q ss_pred             cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEe
Q 007616          313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV  381 (596)
Q Consensus       313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~  381 (596)
                      +..+.++..|++++|....+|.     -..+|+.|.+++|..++.+|..- .++|+.|.+.+|..+..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc
Confidence            4445778888888887777772     22468888888877776666311 256777777777655433

>PLN03150 hypothetical protein; Provisional

Probab=97.99  E-value=5.1e-06  Score=89.77  Aligned_cols=82  Identities=23%  Similarity=0.301  Sum_probs=72.9

Q ss_pred             CcEEeecCCCcc-ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEE
Q 007616          169 LRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV  247 (596)
Q Consensus       169 L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~  247 (596)
                      ++.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|++|++.+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            778999999998 7899999999999999999955568998999999999999999996678999999999999998876


Q ss_pred             ecc
Q 007616          248 VGK  250 (596)
Q Consensus       248 ~~~  250 (596)
                      +..
T Consensus       500 N~l  502 (623)
T PLN03150        500 NSL  502 (623)
T ss_pred             Ccc
Confidence            644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.99  E-value=2.3e-06  Score=80.80  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             ccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccc----cccCCc-------ccCCCccceeecCCCCc
Q 007616          163 IAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRL----KKLFPD-------IGNLVNLRHLKDSHSNL  226 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~----~~lp~~-------i~~L~~L~~L~l~~~~~  226 (596)
                      +..+..+..++|++|.|.     .+.+.+.+.++|+.-+++.- ..    .++|+.       +-..++|++||||+|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            345667788888888775     24455666777887777754 22    233433       33456888888888873


Q ss_pred             ccccccc----ccCCcccCCCCcEEeccCC
Q 007616          227 LEEMPLR----IGKLTSLRTLAKFVVGKGN  252 (596)
Q Consensus       227 l~~lp~~----l~~l~~L~~L~~~~~~~~~  252 (596)
                      -...++.    +.+++.|++|.+.++++..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~  134 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP  134 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence            3333332    5567788888877776643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=7.1e-06  Score=53.94  Aligned_cols=41  Identities=29%  Similarity=0.420  Sum_probs=34.3

Q ss_pred             CcCcEEEccccccccccCCcccCCCccceeecCCCCccccccc
Q 007616          190 YNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL  232 (596)
Q Consensus       190 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~  232 (596)
                      ++|++|++++| .++.+|..+++|++|++|++++|. +.++|.
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDISP   41 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence            57999999999 888999889999999999999998 776643

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.92  E-value=2.5e-06  Score=87.88  Aligned_cols=84  Identities=29%  Similarity=0.380  Sum_probs=55.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      ++.+++|.+|++.+|.|..+...+..+++|++|++++| .++.+ .++..+..|+.|++++|. +..+. ++..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence            55667777777777777766555667777777777777 66666 346666777777777776 55553 3555666666


Q ss_pred             CCcEEecc
Q 007616          243 LAKFVVGK  250 (596)
Q Consensus       243 L~~~~~~~  250 (596)
                      +++.++..
T Consensus       167 l~l~~n~i  174 (414)
T KOG0531|consen  167 LDLSYNRI  174 (414)
T ss_pred             ccCCcchh
Confidence            66555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=7.7e-05  Score=74.12  Aligned_cols=69  Identities=23%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      +..+.+++.|++++|.++.+|.   -..+|+.|.+++|..+..+|..+.  .+|++|++++|..+..+|.++..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccce
Confidence            4557899999999999999983   234799999999988888887663  68999999999668888875433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.76  E-value=9.2e-06  Score=87.55  Aligned_cols=157  Identities=20%  Similarity=0.180  Sum_probs=96.6

Q ss_pred             cCCCcEEeecCCCc-c-cccccc-ccCCcCcEEEcccccccc-ccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616          166 LKHLRYLDFSHTAI-E-VLSESV-STLYNLQTLILEYCYRLK-KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  241 (596)
Q Consensus       166 l~~L~~L~L~~~~i-~-~lp~~i-~~l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~  241 (596)
                      -.+|+.||+++... . .-|..+ ..||+|+.|.+++-.... ++-.-..++++|..||+|++. +..+ .++++|++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHH
Confidence            35788888887632 2 223444 358888888888742211 122224577888888888888 7777 6788888888


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCH--hhHHHHhcCCccccccccccccCCcchhhhhccCCCCCc
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDA--EDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGL  319 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  319 (596)
                      .|.+.+........+.++-+|++|+ .|+++.-......  .......-..+++|+.|+.++........-..+...++|
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            8887777776666677777777777 7777664443332  222223344567777777775543222222333445555


Q ss_pred             cEEEEe
Q 007616          320 KELKVR  325 (596)
Q Consensus       320 ~~L~l~  325 (596)
                      +.+..-
T Consensus       278 ~~i~~~  283 (699)
T KOG3665|consen  278 QQIAAL  283 (699)
T ss_pred             hhhhhh
Confidence            555433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.69  E-value=2.7e-06  Score=87.58  Aligned_cols=110  Identities=25%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+..++.-++.|+.|||++|+++... .+..|++|++|||++| .+..+|.- ...+ +|+.|.+++|. ++.+ .++.+
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL-~gie~  252 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNA-LTTL-RGIEN  252 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccH-HHhh-hhHHh
Confidence            34455566777888888888887664 5777888888888888 77777642 1223 38888888887 6666 45788


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISG  273 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~  273 (596)
                      |.+|+.||++++-......+.-+..|..|+ .+.+.+
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~-~L~LeG  288 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLI-VLWLEG  288 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHH-HHhhcC
Confidence            888888887776655555555555555555 444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=1.6e-05  Score=73.45  Aligned_cols=83  Identities=20%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             cccCCCcEEeecCCCcc---ccccccccCCcCcEEEccccccccccCCcc-cCCCccceeecCCCCcccc--ccccccCC
Q 007616          164 AELKHLRYLDFSHTAIE---VLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEE--MPLRIGKL  237 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~--lp~~l~~l  237 (596)
                      ....+++.|||.+|.|+   ++-..+.+++.|++|+++.| .+...-... ..+.+|+.|-+.++. +..  .-..+..+
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDL  145 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcc
Confidence            34678888999999887   34445578899999999888 332211111 245688888888776 322  22335666


Q ss_pred             cccCCCCcEEe
Q 007616          238 TSLRTLAKFVV  248 (596)
Q Consensus       238 ~~L~~L~~~~~  248 (596)
                      +.+++|.++.+
T Consensus       146 P~vtelHmS~N  156 (418)
T KOG2982|consen  146 PKVTELHMSDN  156 (418)
T ss_pred             hhhhhhhhccc
Confidence            77777766544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.60  E-value=1.5e-05  Score=82.19  Aligned_cols=95  Identities=27%  Similarity=0.325  Sum_probs=75.0

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      .+..++.++++.|.+..+-..++.+++|+.|++.+| .+..+...+..+++|++|++++|. ++.+. ++..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheeccccc-ccccc-chhhccchhhhe
Confidence            466777778888888876566888999999999999 888886558899999999999999 88874 588888899999


Q ss_pred             cEEeccCCCCCchhccch
Q 007616          245 KFVVGKGNCSGLKELRSL  262 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L  262 (596)
                      +.++.+.....+..+..+
T Consensus       147 l~~N~i~~~~~~~~l~~L  164 (414)
T KOG0531|consen  147 LSGNLISDISGLESLKSL  164 (414)
T ss_pred             eccCcchhccCCccchhh
Confidence            877766554444443333

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.42  E-value=1.4e-05  Score=75.68  Aligned_cols=188  Identities=21%  Similarity=0.189  Sum_probs=111.3

Q ss_pred             ccccccCCCcEEeecCCCcc-c----cccccccCCcCcEEEccccccccccC--------------CcccCCCccceeec
Q 007616          161 NDIAELKHLRYLDFSHTAIE-V----LSESVSTLYNLQTLILEYCYRLKKLF--------------PDIGNLVNLRHLKD  221 (596)
Q Consensus       161 ~~~~~l~~L~~L~L~~~~i~-~----lp~~i~~l~~L~~L~L~~~~~~~~lp--------------~~i~~L~~L~~L~l  221 (596)
                      +.+...++|++||||+|-+. .    +-.-+..+..|+.|.|.+| .++..-              .-+++-++|+++..
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            33445668888888888665 2    2234566778888888888 443211              11334456666666


Q ss_pred             CCCCccccccc-----cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccccc
Q 007616          222 SHSNLLEEMPL-----RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEA  296 (596)
Q Consensus       222 ~~~~~l~~lp~-----~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~  296 (596)
                      ..|. +..-+.     .+...+.|+.+.+..+++                          ...........+..+++|+.
T Consensus       165 ~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I--------------------------~~eG~~al~eal~~~~~Lev  217 (382)
T KOG1909|consen  165 GRNR-LENGGATALAEAFQSHPTLEEVRLSQNGI--------------------------RPEGVTALAEALEHCPHLEV  217 (382)
T ss_pred             eccc-cccccHHHHHHHHHhccccceEEEecccc--------------------------cCchhHHHHHHHHhCCccee
Confidence            6665 443322     122333333333322221                          11122455666888899999


Q ss_pred             ccccccCCc---chhhhhccCCCCCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCCCCCC----CC-CCCC
Q 007616          297 LSPKWGNKI---QTCVFEMLKPHYGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCNQCTT----LP-SVGH  363 (596)
Q Consensus       297 L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~----l~-~l~~  363 (596)
                      |++..+...   .......+..+++|+.|++++|....     +...+.. ..++|+.|.+.+|.....    +. .++.
T Consensus       218 Ldl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  218 LDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             eecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence            999877542   22234556677889999999886432     1112222 478999999999885422    11 3556


Q ss_pred             CCccceeeccCccC
Q 007616          364 LPSLKNLVIKGMAK  377 (596)
Q Consensus       364 l~~L~~L~L~~~~~  377 (596)
                      .|.|+.|+|++|..
T Consensus       297 k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRL  310 (382)
T ss_pred             chhhHHhcCCcccc
Confidence            89999999999863

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.18  E-value=9.5e-06  Score=83.74  Aligned_cols=92  Identities=25%  Similarity=0.310  Sum_probs=70.1

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  245 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~  245 (596)
                      ..|.+.++++|.+..+..++.-++.|+.|||+.| ++... +.+..+.+|++||+++|. ++.+|.- ...+ +|+.|.+
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~l  239 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNL  239 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchh-hhhhh-HHHHhcccccccccccch-hccccccchhhh-hheeeee
Confidence            4688899999999988889999999999999999 66666 378999999999999999 8888863 2223 3777877


Q ss_pred             EEeccCCCCCchhccch
Q 007616          246 FVVGKGNCSGLKELRSL  262 (596)
Q Consensus       246 ~~~~~~~~~~l~~l~~L  262 (596)
                      .++......++..+.+|
T Consensus       240 rnN~l~tL~gie~LksL  256 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSL  256 (1096)
T ss_pred             cccHHHhhhhHHhhhhh
Confidence            66655444444333333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.11  E-value=4.2e-05  Score=62.54  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=56.5

Q ss_pred             ccccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  241 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~  241 (596)
                      +.+..+|...+|++|.+..+|+.+. ..+.+++|++++| .+.++|.++..++.|+.|+++.|. +...|.-+..|.+|-
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLD  126 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHH
Confidence            3455667777777777777776664 3447777777777 777777777777777777777777 666666666666666


Q ss_pred             CCCc
Q 007616          242 TLAK  245 (596)
Q Consensus       242 ~L~~  245 (596)
                      .|+.
T Consensus       127 ~Lds  130 (177)
T KOG4579|consen  127 MLDS  130 (177)
T ss_pred             HhcC
Confidence            6653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.84  E-value=0.00016  Score=59.26  Aligned_cols=86  Identities=19%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             eeEEEEecccccccccccccccCcccc-cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCc
Q 007616          137 LRHLSYLTSRFDGIKRFEGLHELPNDI-AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN  215 (596)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~l~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~  215 (596)
                      +..+++.++.+.         .+|+.| .+++.+..|++++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+
T Consensus        55 l~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~  124 (177)
T KOG4579|consen   55 LTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK  124 (177)
T ss_pred             EEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence            445566665554         466666 4566899999999999999999999999999999999 88888888888999


Q ss_pred             cceeecCCCCcccccccc
Q 007616          216 LRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       216 L~~L~l~~~~~l~~lp~~  233 (596)
                      |-.|+..++. ..++|..
T Consensus       125 l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  125 LDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             HHHhcCCCCc-cccCcHH
Confidence            9999999888 6777755

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.80  E-value=0.00022  Score=65.31  Aligned_cols=193  Identities=21%  Similarity=0.213  Sum_probs=107.0

Q ss_pred             ccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEcccccccc----ccCC-------cccCCCccceeecCCCCc
Q 007616          163 IAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLK----KLFP-------DIGNLVNLRHLKDSHSNL  226 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~-------~i~~L~~L~~L~l~~~~~  226 (596)
                      +..+..+..++||+|.|.     .+...|.+-.+|+..+++.- ..+    .+|+       .+-++++|+..++|+|.+
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            344678888899998876     34455667788888888764 222    2332       355788999999999885


Q ss_pred             ccccccc----ccCCcccCCCCcEEeccCCCCC--c-hhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccc
Q 007616          227 LEEMPLR----IGKLTSLRTLAKFVVGKGNCSG--L-KELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSP  299 (596)
Q Consensus       227 l~~lp~~----l~~l~~L~~L~~~~~~~~~~~~--l-~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l  299 (596)
                      -...|+.    |++-+.|.+|.+.+++.....+  + +.+.+|...+                    .....+.|+....
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK--------------------Kaa~kp~Le~vic  164 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK--------------------KAADKPKLEVVIC  164 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh--------------------hhccCCCceEEEe
Confidence            5555544    5667788888887776643221  1 1222222221                    1223344444443


Q ss_pred             cccCC---cchhhhhccCCCCCccEEEEeccCCCCC----CCCCCCCCCCCccEEEEecCCCCCCCC-----CCCCCCcc
Q 007616          300 KWGNK---IQTCVFEMLKPHYGLKELKVRGYGGTKF----PAWLGQSSFENLVVLRFKNCNQCTTLP-----SVGHLPSL  367 (596)
Q Consensus       300 ~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~l~-----~l~~l~~L  367 (596)
                      ..+..   ........+....+|+.+.+..|.+..-    -...+...+++|+.|++.+|.....-.     .+..-+.|
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l  244 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL  244 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence            33321   1112223344446777777777653211    001111245677778877776432111     23344567


Q ss_pred             ceeeccCcc
Q 007616          368 KNLVIKGMA  376 (596)
Q Consensus       368 ~~L~L~~~~  376 (596)
                      +.|.+.+|-
T Consensus       245 rEL~lnDCl  253 (388)
T COG5238         245 RELRLNDCL  253 (388)
T ss_pred             hhccccchh
Confidence            777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00023  Score=66.13  Aligned_cols=83  Identities=19%  Similarity=0.129  Sum_probs=51.9

Q ss_pred             cccCCCcEEeecCCCccccc--ccc-ccCCcCcEEEcccccccc---ccCCcccCCCccceeecCCCCccccccccc-cC
Q 007616          164 AELKHLRYLDFSHTAIEVLS--ESV-STLYNLQTLILEYCYRLK---KLFPDIGNLVNLRHLKDSHSNLLEEMPLRI-GK  236 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp--~~i-~~l~~L~~L~L~~~~~~~---~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l-~~  236 (596)
                      .....+..|-+.++.|...-  ..| ..+..++.+||.+| .+.   ++-..+.+|+.|++|+++.|. +...-..+ ..
T Consensus        42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p  119 (418)
T KOG2982|consen   42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLP  119 (418)
T ss_pred             ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCccc
Confidence            34445557777777776432  233 45788999999999 443   343446789999999999987 33321222 23


Q ss_pred             CcccCCCCcEEe
Q 007616          237 LTSLRTLAKFVV  248 (596)
Q Consensus       237 l~~L~~L~~~~~  248 (596)
                      +.+|++|-+.+.
T Consensus       120 ~~nl~~lVLNgT  131 (418)
T KOG2982|consen  120 LKNLRVLVLNGT  131 (418)
T ss_pred             ccceEEEEEcCC
Confidence            456666654433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.00019  Score=76.09  Aligned_cols=117  Identities=24%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             cCCccccccccccccCCcchh-hhhccCCCCCccEEEEecc-CC-CCCC--CCCCCCCCCCccEEEEecCCCCCCCC--C
Q 007616          288 LNGKKKLEALSPKWGNKIQTC-VFEMLKPHYGLKELKVRGY-GG-TKFP--AWLGQSSFENLVVLRFKNCNQCTTLP--S  360 (596)
Q Consensus       288 l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~-~~-~~~~--~~~~~~~~~~L~~L~l~~~~~~~~l~--~  360 (596)
                      ...+++|+.+.+..+...... ........++|+.|+++++ .. ...+  .......+++|+.|++++|...++.-  .
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            344677888877766543332 3344556778888888762 11 1111  00111245778888888777544332  2


Q ss_pred             CC-CCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccc
Q 007616          361 VG-HLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEW  408 (596)
Q Consensus       361 l~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  408 (596)
                      ++ .+++|+.|.+.+|..++..+....    ...+++|++|+++.|..+
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i----~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSI----AERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHH----HHhcCcccEEeeecCccc
Confidence            22 367788887777765433322111    122667777777766654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.39  E-value=0.0029  Score=55.70  Aligned_cols=82  Identities=27%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             ccccCCCcEEeecCCCccccccccc-cCCcCcEEEccccccccccC--CcccCCCccceeecCCCCccccccc----ccc
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVS-TLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEEMPL----RIG  235 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~l~  235 (596)
                      |..++.|.+|.+++|+|+.+.+.+. .+++|+.|.+.+| .+.++-  ..+..+++|++|.+-+|. +..-+.    -+.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~  137 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY  137 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence            3455666666666666666644443 3455666666666 444332  124455666666666665 443322    145


Q ss_pred             CCcccCCCCcE
Q 007616          236 KLTSLRTLAKF  246 (596)
Q Consensus       236 ~l~~L~~L~~~  246 (596)
                      ++++|++||..
T Consensus       138 klp~l~~LDF~  148 (233)
T KOG1644|consen  138 KLPSLRTLDFQ  148 (233)
T ss_pred             ecCcceEeehh
Confidence            56666666543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.35  E-value=0.0018  Score=35.23  Aligned_cols=19  Identities=37%  Similarity=0.588  Sum_probs=10.0

Q ss_pred             CcEEeecCCCccccccccc
Q 007616          169 LRYLDFSHTAIEVLSESVS  187 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~  187 (596)
                      |++||+++|.++.+|++|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.25  E-value=0.0037  Score=55.05  Aligned_cols=83  Identities=20%  Similarity=0.335  Sum_probs=64.7

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccC-CCccceeecCCCCccccccc--cccCCcccCCC
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGN-LVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTL  243 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L  243 (596)
                      .+...+||++|.+..++. +..++.|.+|.+++| .+..+-+.+.. +++|+.|.+.+|+ +.++.+  .+..+++|++|
T Consensus        42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhccc-CCCccccceEEecCC-cceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence            467789999999887653 778999999999999 78877666665 5679999999998 776543  26778888888


Q ss_pred             CcEEeccCC
Q 007616          244 AKFVVGKGN  252 (596)
Q Consensus       244 ~~~~~~~~~  252 (596)
                      .+.++....
T Consensus       119 tll~Npv~~  127 (233)
T KOG1644|consen  119 TLLGNPVEH  127 (233)
T ss_pred             eecCCchhc
Confidence            776665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.20  E-value=0.0025  Score=58.54  Aligned_cols=84  Identities=24%  Similarity=0.231  Sum_probs=56.0

Q ss_pred             ccccCCCcEEeecCC--Ccc-ccccccccCCcCcEEEccccccccccC--CcccCCCccceeecCCCCccccccc----c
Q 007616          163 IAELKHLRYLDFSHT--AIE-VLSESVSTLYNLQTLILEYCYRLKKLF--PDIGNLVNLRHLKDSHSNLLEEMPL----R  233 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~--~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~  233 (596)
                      +..|++|+.|.++.|  ++. .++.....+++|++|++++| .++.+-  ..+..+.+|..|++.+|. ...+-.    -
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~-~~~l~dyre~v  138 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS-VTNLDDYREKV  138 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC-ccccccHHHHH
Confidence            345778999999988  555 56555566799999999998 554321  125677788888888887 443322    1


Q ss_pred             ccCCcccCCCCcEEe
Q 007616          234 IGKLTSLRTLAKFVV  248 (596)
Q Consensus       234 l~~l~~L~~L~~~~~  248 (596)
                      +.-+++|++|+...+
T Consensus       139 f~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  139 FLLLPSLKYLDGCDV  153 (260)
T ss_pred             HHHhhhhcccccccc
Confidence            445677777775444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.0004  Score=63.90  Aligned_cols=79  Identities=20%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCC
Q 007616          166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTL  243 (596)
Q Consensus       166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L  243 (596)
                      +.+.+.|++.++.+..+. .+.+++.|++|.|+-| .+..+ +.+..+++|+.|+|..|. +.++-+-  +.++++|++|
T Consensus        18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH-HHHhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence            344555566666555442 2345566666666665 55554 235556666666666555 4443221  4455556665


Q ss_pred             CcEEe
Q 007616          244 AKFVV  248 (596)
Q Consensus       244 ~~~~~  248 (596)
                      .+..+
T Consensus        94 WL~EN   98 (388)
T KOG2123|consen   94 WLDEN   98 (388)
T ss_pred             hhccC
Confidence            55443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.12  E-value=0.003  Score=68.47  Aligned_cols=34  Identities=41%  Similarity=0.495  Sum_probs=17.0

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccc
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEY  199 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~  199 (596)
                      ++++|+.||+|+++++.+ .++++|+|||+|.+++
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN  204 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence            444555555555555544 3445555555554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.02  E-value=0.00075  Score=71.49  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             CCCCEEEEeeccChhc-cC---CC-CCCcceEEecCCccc
Q 007616          431 SSLERIVITSCEQLLV-SY---TA-LPPLCELEIDGFSEL  465 (596)
Q Consensus       431 ~~L~~L~l~~c~~l~~-~~---~~-l~~L~~L~l~~c~~l  465 (596)
                      ..++.|.+..|..... .+   .. +.+++.+++.+|..+
T Consensus       401 ~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  401 DSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             CccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            3378888888875421 11   11 556677777776644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.86  E-value=0.0028  Score=58.25  Aligned_cols=85  Identities=20%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEcccc--ccccccCCcccCCCccceeecCCCCcccccccc---ccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYC--YRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR---IGKL  237 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~--~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~---l~~l  237 (596)
                      .-.+..|+.|++.+..++.+- .+..|++|++|.++.|  .....++.-..++++|++|++++|. +.. +..   +.++
T Consensus        39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l  115 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKEL  115 (260)
T ss_pred             cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhh
Confidence            344556666777666665442 2446889999999988  4445555556677999999999998 554 222   4555


Q ss_pred             cccCCCCcEEecc
Q 007616          238 TSLRTLAKFVVGK  250 (596)
Q Consensus       238 ~~L~~L~~~~~~~  250 (596)
                      .+|..|+++++..
T Consensus       116 ~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  116 ENLKSLDLFNCSV  128 (260)
T ss_pred             cchhhhhcccCCc
Confidence            6666666655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.0059  Score=33.21  Aligned_cols=21  Identities=29%  Similarity=0.253  Sum_probs=11.4

Q ss_pred             cCcEEEccccccccccCCcccC
Q 007616          191 NLQTLILEYCYRLKKLFPDIGN  212 (596)
Q Consensus       191 ~L~~L~L~~~~~~~~lp~~i~~  212 (596)
                      +|++|++++| .++.+|+++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            3556666666 45555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.80  E-value=0.0032  Score=57.98  Aligned_cols=45  Identities=20%  Similarity=0.130  Sum_probs=25.7

Q ss_pred             cccCCcCcEEEccccccccccCCc----ccCCCccceeecCCCCcccccc
Q 007616          186 VSTLYNLQTLILEYCYRLKKLFPD----IGNLVNLRHLKDSHSNLLEEMP  231 (596)
Q Consensus       186 i~~l~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~l~~lp  231 (596)
                      +-+|++|+..+||.|......|+.    |.+-+.|.+|.+++|. ++.+.
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a  136 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIA  136 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence            445666666666666444444433    4455667777777776 55443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.68  E-value=0.022  Score=28.64  Aligned_cols=16  Identities=38%  Similarity=0.586  Sum_probs=6.8

Q ss_pred             CCcEEeecCCCccccc
Q 007616          168 HLRYLDFSHTAIEVLS  183 (596)
Q Consensus       168 ~L~~L~L~~~~i~~lp  183 (596)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555666665555544

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.0025  Score=58.83  Aligned_cols=79  Identities=20%  Similarity=0.167  Sum_probs=58.8

Q ss_pred             cCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccc
Q 007616          188 TLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQE  267 (596)
Q Consensus       188 ~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~  267 (596)
                      .+.+.+.|+..+| .+.++ ....+|+.|++|.|+-|. +..+.+ +..+++|++|++..+.+.+...+.-|.+++.|+ 
T Consensus        17 dl~~vkKLNcwg~-~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr-   91 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR-   91 (388)
T ss_pred             HHHHhhhhcccCC-CccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh-
Confidence            3667788899999 77776 446789999999999998 777744 788999999988777665555555555566555 


Q ss_pred             eEEE
Q 007616          268 KLTI  271 (596)
Q Consensus       268 ~l~i  271 (596)
                      .|.+
T Consensus        92 ~LWL   95 (388)
T KOG2123|consen   92 TLWL   95 (388)
T ss_pred             hHhh
Confidence            4444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.78  E-value=0.071  Score=26.79  Aligned_cols=16  Identities=50%  Similarity=0.461  Sum_probs=6.5

Q ss_pred             cCcEEEccccccccccC
Q 007616          191 NLQTLILEYCYRLKKLF  207 (596)
Q Consensus       191 ~L~~L~L~~~~~~~~lp  207 (596)
                      +|+.|++++| .++.+|
T Consensus         2 ~L~~L~l~~n-~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNN-RLTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCC-CCCCCc
Confidence            4555555555 344443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.02  E-value=0.0072  Score=54.39  Aligned_cols=83  Identities=22%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..++...+||++.|++..+-..++-+..|..|+++.+ .+..+|.+++.+..++++++..|. ....|.+.++++++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence            45667788888888888777777778888888888888 788888888888888888888777 7888888888888888


Q ss_pred             CCcEE
Q 007616          243 LAKFV  247 (596)
Q Consensus       243 L~~~~  247 (596)
                      ++.-.
T Consensus       116 ~e~k~  120 (326)
T KOG0473|consen  116 NEQKK  120 (326)
T ss_pred             hhhcc
Confidence            87543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.00  E-value=0.22  Score=28.20  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=11.8

Q ss_pred             CCCcEEeecCCCccccccc
Q 007616          167 KHLRYLDFSHTAIEVLSES  185 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~  185 (596)
                      ++|++|+|++|.|+.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.00  E-value=0.22  Score=28.20  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=11.8

Q ss_pred             CCCcEEeecCCCccccccc
Q 007616          167 KHLRYLDFSHTAIEVLSES  185 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~  185 (596)
                      ++|++|+|++|.|+.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.40  E-value=0.42  Score=27.00  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=11.1

Q ss_pred             CccceeecCCCCcccccccc
Q 007616          214 VNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~  233 (596)
                      ++|++|++++|. +..+|.+
T Consensus         2 ~~L~~L~L~~N~-l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQ-LSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCc-CCcCCHH
Confidence            455666666665 5565554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.40  E-value=0.42  Score=27.00  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=11.1

Q ss_pred             CccceeecCCCCcccccccc
Q 007616          214 VNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~  233 (596)
                      ++|++|++++|. +..+|.+
T Consensus         2 ~~L~~L~L~~N~-l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQ-LSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCc-CCcCCHH
Confidence            455666666665 5565554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=85.84  E-value=2.1  Score=35.60  Aligned_cols=90  Identities=17%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             cCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCC
Q 007616          288 LNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLP  365 (596)
Q Consensus       288 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~  365 (596)
                      +.++.+|+.+.+...  ...-....+..+++|+.+.+.+. ...++.... ..+++++.+.+.+  ....++  .+..++
T Consensus         8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F-~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAF-SNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTT-TT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeee-ecccccccccccc--cccccccccccccc
Confidence            444555665555321  11111223444556777777653 444443332 1455677777754  223333  355567


Q ss_pred             ccceeeccCccCceEeCccc
Q 007616          366 SLKNLVIKGMAKVKSVGLEF  385 (596)
Q Consensus       366 ~L~~L~L~~~~~l~~~~~~~  385 (596)
                      +|+.+.+..  .+..++...
T Consensus        82 ~l~~i~~~~--~~~~i~~~~   99 (129)
T PF13306_consen   82 NLKNIDIPS--NITEIGSSS   99 (129)
T ss_dssp             TECEEEETT--T-BEEHTTT
T ss_pred             cccccccCc--cccEEchhh
Confidence            777777754  244554443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.81  E-value=0.19  Score=44.60  Aligned_cols=79  Identities=23%  Similarity=0.251  Sum_probs=51.3

Q ss_pred             CCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-Cccc-CCCccceeecCCCCccccccc-cccCCcccCC
Q 007616          167 KHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIG-NLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRT  242 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~-~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~  242 (596)
                      ..++.+|-+++.|... -.-+..++.++.|.+.+|..+..-- +.++ -.++|+.|++++|..+++-.- .+.++++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            3577888888877732 2456788888889998886554211 1122 347899999999987776321 2555566666


Q ss_pred             CCc
Q 007616          243 LAK  245 (596)
Q Consensus       243 L~~  245 (596)
                      |.+
T Consensus       181 L~l  183 (221)
T KOG3864|consen  181 LHL  183 (221)
T ss_pred             HHh
Confidence            553

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.66  E-value=0.18  Score=44.78  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             CCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccc
Q 007616          364 LPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEW  408 (596)
Q Consensus       364 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  408 (596)
                      .++|+.|+|++|+.++.-+....     ..|++|+.|.+.+++.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L-----~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACL-----LKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchheeeccCCCeechhHHHHH-----HHhhhhHHHHhcCchhh
Confidence            35555556655555544433221     12555555555554433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.69  E-value=0.98  Score=25.52  Aligned_cols=15  Identities=27%  Similarity=0.620  Sum_probs=6.9

Q ss_pred             CCCCeeecCCCCCCc
Q 007616          535 TSLERLELPRCPVLR  549 (596)
Q Consensus       535 ~~L~~L~l~~c~~l~  549 (596)
                      ++|++|++++|++++
T Consensus         2 ~~L~~L~l~~C~~it   16 (26)
T smart00367        2 PNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCEeCCCCCCCcC
Confidence            344444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	596
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-25
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  107 bits (270), Expect = 8e-25
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 22/218 (10%)

Query: 17  GFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEF 76
               A+ +S   L   +K  +   S L K  +   + + +LW  E         +++E+ 
Sbjct: 363 ALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVEDI 414

Query: 77  GRKSFQGLHSRSFFQQSKID-ASRFLMHDLIHDLACWASGEICWCMESTWDGNNERRFSR 135
                Q   ++S     +   + R+ +HDL  D       + C  ++      +++  ++
Sbjct: 415 ----LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLT---EKNCSQLQ----DLHKKIITQ 463

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
             R+    T   D        + L   +A  K  + L     +++ +      L     L
Sbjct: 464 FQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTE-LVGPAHL 522

Query: 196 ILEYC-YRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL 232
           I E+  YR      D     N +     + +LL   P 
Sbjct: 523 IHEFVEYRHILDEKDCAVSENFQEFLSLNGHLLGRQPF 560

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 90.4 bits (224), Expect = 3e-19
 Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 14/185 (7%)

Query: 15  FKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQME 74
           +K    AL      L    +   A+   +P G     +    +   +         +Q++
Sbjct: 371 YKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI---CSNEEEQLD 427

Query: 75  EFGRKSFQGLHSRSFFQQSKIDA-SRFLMHDLIHDLACWASGEIC-----WCMESTWDGN 128
           +      + L  R      K      F +  +IH                  +E      
Sbjct: 428 DEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEI 487

Query: 129 NERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVST 188
                S   RH+     +F    R     E+     E   +R  DF    +++  +   +
Sbjct: 488 GNNNVSVPERHIPSHFQKF----RRSSASEMYPKTTEETVIRPEDFPK-FMQLHQKFYDS 542

Query: 189 LYNLQ 193
           L N  
Sbjct: 543 LKNFA 547

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 52/230 (22%), Positives = 85/230 (36%), Gaps = 47/230 (20%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L + P+    L HL+++      +  L +++     L+TL L     L+ L   I +L  
Sbjct: 93  LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNR 151

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTS------LRTLAKFVVGKGNCSGLKEL-RSLMHLQ-- 266
           LR L       L E+P  +    +      L  L    +     +G++ L  S+ +LQ  
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL---EWTGIRSLPASIANLQNL 208

Query: 267 EKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326
           + L I    +                 L AL P   +         L     L+EL +RG
Sbjct: 209 KSLKIRN--S----------------PLSALGPAIHH---------LP---KLEELDLRG 238

Query: 327 YGG-TKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKG 374
                 +P   G      L  L  K+C+   TLP  +  L  L+ L ++G
Sbjct: 239 CTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 43/223 (19%), Positives = 68/223 (30%), Gaps = 32/223 (14%)

Query: 156 LHELPNDIAELKH--LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213
           L    + + +        L+     +    +    L +LQ + ++    L +L   +   
Sbjct: 68  LKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF 126

Query: 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKEL-RSLMHLQEKLTIS 272
             L  L     N L  +P  I  L  LR L         C  L EL   L          
Sbjct: 127 AGLETL-TLARNPLRALPASIASLNRLREL-----SIRACPELTELPEPLASTDASGEHQ 180

Query: 273 GLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF 332
           GL N+      +  +L     + +L     N         L+    LK LK+R    +  
Sbjct: 181 GLVNL------QSLRLEW-TGIRSLPASIAN---------LQ---NLKSLKIRNSPLSAL 221

Query: 333 PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKG 374
              +       L  L  + C      P   G    LK L++K 
Sbjct: 222 GPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 50/230 (21%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGN--- 212
           L ELP+ + +   L  L  +   +  L  S+++L  L+ L +  C  L +L   + +   
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 213 ------LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG--LKELRSLMH 264
                 LVNL+ L       +  +P  I  L +L++L              L  L     
Sbjct: 176 SGEHQGLVNLQSL-RLEWTGIRSLPASIANLQNLKSL--------KIRNSPLSALGP--- 223

Query: 265 LQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324
                 I  L  +      +E  L G   L    P +G                LK L +
Sbjct: 224 -----AIHHLPKL------EELDLRGCTALRNYPPIFGG---------RA---PLKRLIL 260

Query: 325 RGYGG-TKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVI 372
           +        P  + +     L  L  + C   + LP  +  LP+   +++
Sbjct: 261 KDCSNLLTLPLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSH-TAIEVLSESVSTLYNLQT 194
           +L  L  L      ++    L   P        L+ L     + +  L   +  L  L+ 
Sbjct: 227 HLPKLEELD-----LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 195 LILEYCYRLKKLFPDIGNLVNLRHLKDSH---SNLLEEMP 231
           L L  C  L +L   I  L     +       + L +  P
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 9e-07
 Identities = 55/392 (14%), Positives = 102/392 (26%), Gaps = 110/392 (28%)

Query: 179 IEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLT 238
           +             + L  +    L+     +       +              R     
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA----DRNRWHSAWRQANSN 56

Query: 239 SLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALS 298
           + +               + L++   L E  T  G   +                   L 
Sbjct: 57  NPQIE---------TRTGRALKATADLLEDATQPGRVALE------------------LR 89

Query: 299 PKWGNKIQT---CVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC 355
                 +       F +      L+ + +   G  + P  + Q  F  L  L     N  
Sbjct: 90  ---SVPLPQFPDQAFRLSH----LQHMTIDAAGLMELPDTMQQ--FAGLETLTL-ARNPL 139

Query: 356 TTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGL 414
             LP S+  L  L+ L I+   ++  +         S     L  L         + + L
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL---------QSLRL 190

Query: 415 SIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSY---TALPP-------LCELEIDGFSE 464
                  ++  LP   ++L      + + L +     +AL P       L EL++ G + 
Sbjct: 191 E---WTGIR-SLPASIANL-----QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 465 LFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQ 524
           L                P              L++L     +              +   
Sbjct: 242 L-------------RNYPPIF------GGRAPLKRLI----LK-------------DCSN 265

Query: 525 LESL-SFVGNLTSLERLELPRCPVLRSFPENV 555
           L +L   +  LT LE+L+L  C  L   P  +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 3e-11
 Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 39/207 (18%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN---------------DIAELKHLRYLDFSHTAIE 180
            L  +  + +    IK  +G+  LPN                +  LK+L +L      I+
Sbjct: 41  ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK 100

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240
            L  S+  L  L++L LE+   +  +   + +L  L  L    +N + ++   + +LT L
Sbjct: 101 DL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESL-YLGNNKITDIT-VLSRLTKL 155

Query: 241 RTLAKFVVGKGNCSG--LKELRSLMHLQ--EKLTISGLENVNDAEDAKEAQLNGKKKLEA 296
            TL        +     + ++  L  L   + L +S     N   D +   L G K L+ 
Sbjct: 156 DTL--------SLEDNQISDIVPLAGLTKLQNLYLSK----NHISDLRA--LAGLKNLDV 201

Query: 297 LSPKWGNKIQTCVFEMLKPHYGLKELK 323
           L   +  +                 +K
Sbjct: 202 LE-LFSQECLNKPINHQSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 46/235 (19%), Positives = 75/235 (31%), Gaps = 51/235 (21%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
                     +   +              EL  +  +  +++ I+ + + +  L N+  L
Sbjct: 19  AFAETIKDNLKKKSVTDAVTQ-------NELNSIDQIIANNSDIKSV-QGIQYLPNVTKL 70

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            L    +L  + P + NL NL  L     N       +I  L+SL+ L K          
Sbjct: 71  FLNGN-KLTDIKP-LTNLKNLGWL-FLDEN-------KIKDLSSLKDLKK---------- 110

Query: 256 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315
           LK L SL H      IS +             L    +LE+L     NKI      +L  
Sbjct: 111 LKSL-SLEHNG----ISDING-----------LVHLPQLESLYLG-NNKITD--ITVLSR 151

Query: 316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
              L  L +     +        +    L  L     N  + L ++  L +L  L
Sbjct: 152 LTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSK-NHISDLRALAGLKNLDVL 202

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 60/253 (23%), Positives = 97/253 (38%), Gaps = 44/253 (17%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN---------------DIAELKHLRYLDFSHTAIE 180
           +L  ++ L +   GIK  +G+  L N                +  L  L  +  ++  I 
Sbjct: 44  DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 103

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240
            ++  ++ L NL  L L    ++  +   + NL NL  L+ S  N + ++   +  LTSL
Sbjct: 104 DITP-LANLTNLTGLTLFNN-QITDI-DPLKNLTNLNRLELSS-NTISDIS-ALSGLTSL 158

Query: 241 RTLAKFVVGKGNC-SGLKELRSLMHLQEKLTISG--LENVNDAEDAKEAQLNGKKKLEAL 297
           + L       GN  + LK L +L  L+  L IS   + +++         L     LE+L
Sbjct: 159 QQL-----SFGNQVTDLKPLANLTTLER-LDISSNKVSDISV--------LAKLTNLESL 204

Query: 298 SPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT 357
                N+I       L     L EL + G            +S  NL  L   N NQ + 
Sbjct: 205 IAT-NNQISD--ITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLAN-NQISN 257

Query: 358 LPSVGHLPSLKNL 370
           L  +  L  L  L
Sbjct: 258 LAPLSGLTKLTEL 270

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.1 bits (149), Expect = 5e-10
 Identities = 55/251 (21%), Positives = 94/251 (37%), Gaps = 40/251 (15%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN--------------DIAELKHLRYLDFSHTAIEV 181
           NL +L+ L    + I     L  L +               +A L  L  LD S   +  
Sbjct: 132 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 191

Query: 182 LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR 241
           +   ++ L NL++LI     ++  + P +G L NL  L   + N L+++   +  LT+L 
Sbjct: 192 I-SVLAKLTNLESLIATNN-QISDITP-LGILTNLDEL-SLNGNQLKDIGT-LASLTNLT 246

Query: 242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISG--LENVNDAEDAKEAQLNGKKKLEALSP 299
            L    +     S L  L  L  L E L +    + N++         L G   L  L  
Sbjct: 247 DL---DLANNQISNLAPLSGLTKLTE-LKLGANQISNISP--------LAGLTALTNLEL 294

Query: 300 KWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP 359
              N+++      +     L  L +     +        SS   L  L F N N+ + + 
Sbjct: 295 -NENQLED--ISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYN-NKVSDVS 347

Query: 360 SVGHLPSLKNL 370
           S+ +L ++  L
Sbjct: 348 SLANLTNINWL 358

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
            L  L+ L    + ++    +  L N       L YL      I  +S  VS+L  LQ L
Sbjct: 285 GLTALTNLELNENQLEDISPISNLKN-------LTYLTLYFNNISDISP-VSSLTKLQRL 336

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
                 ++  +   + NL N+  L  +  N + ++   +  LT +  L
Sbjct: 337 FFYNN-KVSDV-SSLANLTNINWL-SAGHNQISDLTP-LANLTRITQL 380

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN---------------DIAELKHLRYLDFSHTAIE 180
           NL++L+YLT  F+ I     +  L                  +A L ++ +L   H  I 
Sbjct: 307 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQIS 366

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240
            L+  ++ L  +  L L           +    V++ +   + +  L   P  I    S 
Sbjct: 367 DLTP-LANLTRITQLGLNDQ-AWTNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGSY 423

Query: 241 RTL 243
              
Sbjct: 424 TEP 426

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 52/248 (20%), Positives = 73/248 (29%), Gaps = 76/248 (30%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLY--------------NLQTLILEYCY 201
           L  LP     L  L       T +  L   +  L+               LQ L +    
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN- 151

Query: 202 RLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG------ 255
           +L  L      L  L     +++N L  +P+    L  L           + S       
Sbjct: 152 QLASLPALPSELCKL----WAYNNQLTSLPMLPSGLQEL-----------SVSDNQLASL 196

Query: 256 ---LKELRSLMHLQEKLT-----ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT 307
                EL  L     +LT      SGL+ +           N   +L +L          
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELI-------VSGN---RLTSLPVLPSE---- 242

Query: 308 CVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPS 366
                      LKEL V G   T  P          L+ L     NQ T LP S+ HL S
Sbjct: 243 -----------LKELMVSGNRLTSLPMLPS-----GLLSLSVYR-NQLTRLPESLIHLSS 285

Query: 367 LKNLVIKG 374
              + ++G
Sbjct: 286 ETTVNLEG 293

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 17/148 (11%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
            +  L+Y+T     +    G+    N       ++ L  ++      +  +S L NL+ L
Sbjct: 42  QMNSLTYITLANINVTDLTGIEYAHN-------IKDLTINNIHATNYN-PISGLSNLERL 93

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            +          P++  L +L  L  SHS   + +  +I  L  + ++   +   G  + 
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI--DLSYNGAITD 151

Query: 256 LKELRSLMHLQE------KLT-ISGLEN 276
           +  L++L  L+        +    G+E+
Sbjct: 152 IMPLKTLPELKSLNIQFDGVHDYRGIED 179

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 63/213 (29%)

Query: 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDS 222
            A++  L Y+  ++  +  L   +   +N++ L +          P I  L NL  L+  
Sbjct: 40  EAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYNP-ISGLSNLERLRIM 96

Query: 223 HSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQE-KLTISGLENVNDAE 281
             ++  +    +  LTSL  L                     +       S L       
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLL--------------------DISHSAHDDSILTK----- 131

Query: 282 DAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSF 341
                 +N   K+ ++   +   I       + P   LK L                   
Sbjct: 132 ------INTLPKVNSIDLSYNGAITD-----IMP---LKTLP------------------ 159

Query: 342 ENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374
             L  L  +  +       +   P L  L    
Sbjct: 160 -ELKSLNIQF-DGVHDYRGIEDFPKLNQLYAFS 190

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 9/98 (9%)

Query: 154 EGLHELPNDIAELKHLRYLDFSHTAIEVLSES--VSTLYNLQTLILEYCYRLKKLFPDIG 211
             L     +      L  +D     +  LS+    +TL  L  + + Y            
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPL 773

Query: 212 NLVNLRHLKDSHS------NLLEEMPLRIGKLTSLRTL 243
           N   L+     H        +L + P  I    SL  L
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 35/269 (13%), Positives = 81/269 (30%), Gaps = 57/269 (21%)

Query: 127 GNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAI------- 179
            N E +  +    +S   ++   +     +  +   I  L  L+ + F+++         
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV 467

Query: 180 -------------EVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNL 226
                        E    S S L +L  + L  C  + +L   + +L  L+ L +   N 
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL-NIACNR 526

Query: 227 LEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELR----SLMHLQEKLTISGLENVNDAED 282
                      T L         +     ++       +L       ++  +  +     
Sbjct: 527 GISAAQLKADWTRLADD------EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG---- 576

Query: 283 AKEAQLNGKKKLEALSPKWGNKIQTC-VFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSF 341
                L+             NK++    F        L +LK+      + P      + 
Sbjct: 577 ----LLD-------CV---HNKVRHLEAFGTNV---KLTDLKLDYNQIEEIPEDFCAFT- 618

Query: 342 ENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
           + +  L F + N+   +P++ +  S+  +
Sbjct: 619 DQVEGLGFSH-NKLKYIPNIFNAKSVYVM 646

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 156 LHELPNDIA--ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCY-----RLKKLFP 208
           L  L +D     L +L  +D S+               L+   + +       R+ + +P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 209 D-IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
             I    +L  L    SN + ++  ++     L  L
Sbjct: 800 TGITTCPSLIQL-QIGSNDIRKVDEKL--TPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 156 LHELPND--IAELKHLRYLDFSHTAIEVLSESVST------LYNLQTLILEYCYRLKKLF 207
           L  +PN      +  +  +DFS+  I     ++S         N  T+ L Y   ++K  
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFP 689

Query: 208 PDI-GNLVNLRHLKDSH-------SNLLEEMPLRIGKLTSLRTL 243
            ++      +  +  S+        N L+           L T+
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 36/223 (16%), Positives = 70/223 (31%), Gaps = 50/223 (22%)

Query: 158 ELPNDIAELKHLRYLDFSHTAIEVLSE-------SVSTLYNLQTLILEYCYRLKKLFPDI 210
            +P+ I +L  L+ L F   +  V          +       +  I  +  ++   +   
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLT 270
            NL +L     + +  ++  P++     SL+      +        K ++ L  LQ  + 
Sbjct: 398 LNLSDLLQDAINRNPEMK--PIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI-IY 454

Query: 271 ISG--LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG 328
            +       N A D ++A  +  K+ E     W N                         
Sbjct: 455 FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN------------------------- 489

Query: 329 GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNL 370
                        ++L  +   NC   T LP  +  LP L++L
Sbjct: 490 ------------LKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 36/269 (13%), Positives = 73/269 (27%), Gaps = 66/269 (24%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDIGNLV 214
           +  L         L  L   +  IE + E   +    ++ L   +  +LK + P+I N  
Sbjct: 585 VRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYI-PNIFNAK 641

Query: 215 NLRHLK--DSHSNLLEEMPLRIG------KLTSLRTLA----KF-VVGKGNCSGLKELRS 261
           ++  +   D   N +      I       K  +  T+     +         +    + +
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 262 LMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEAL--SPKWGNKIQTCVFEMLKPHYGL 319
           +  L   L ++ +    ++   K+        L  +       NK+              
Sbjct: 702 I-ILSNNL-MTSIP--ENSLKPKDGNYKNTYLLTTIDLR---FNKL-------------- 740

Query: 320 KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKV 378
                     T        ++   L  +     N  ++ P    +   LK   I      
Sbjct: 741 ----------TSLSDDFRATTLPYLSNMDVSY-NCFSSFPTQPLNSSQLKAFGI------ 783

Query: 379 KSVGLEFCGNYCSEPFP-------SLETL 400
                +  GN     +P       SL  L
Sbjct: 784 -RHQRDAEGNRILRQWPTGITTCPSLIQL 811

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 13/119 (10%)

Query: 136 NLRHLSYLT---SRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSES--VSTLY 190
               LS +    +    I +   L +   +      L  +D     +  LS+    +TL 
Sbjct: 455 TGSPLSSINLMGNMLTEIPK-NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 191 NLQTLILEYCYRLKKLFPDIGNLVNLRHLK------DSHSNLLEEMPLRIGKLTSLRTL 243
            L  + L Y     K      N   L+            +  L E P  I    SL  L
Sbjct: 514 YLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           +  +   +  L  LR     ++    ++E++   +  +    EY  + K       NL +
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPF--VAENICEAWENENS--EYAQQYKTEDLKWDNLKD 250

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSLRTLA----KFVVG---KGNCSGLKELRSLMHLQE 267
           L  ++  +   L ++P  +  L  ++ +     + + G   K +   L +      +Q 
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 18/139 (12%), Positives = 48/139 (34%), Gaps = 16/139 (11%)

Query: 135 RNLRHLSYLTS-RFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS--ESVSTLYN 191
             ++ +  +   R    ++ +   +   D    + ++ +   +  ++      S+  +  
Sbjct: 273 PEMQLI-NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 192 LQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTLA----KF 246
           L  L   Y  +L+   P  G+ + L  L +   N + E+P    G    +  L+    K 
Sbjct: 332 LGMLECLYN-QLEGKLPAFGSEIKLASL-NLAYNQITEIPANFCGFTEQVENLSFAHNKL 389

Query: 247 -----VVGKGNCSGLKELR 260
                +    + S +  + 
Sbjct: 390 KYIPNIFDAKSVSVMSAID 408

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 22/153 (14%)

Query: 133 FSRNLRHLSYLT---SRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVST 188
            ++++  +S +    +    +   +    L     +  ++  ++ S+  I     E  ST
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSV-DGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 189 LYNLQTLILEYC-------YRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP--LRIGKLTS 239
              L ++ L            LK    +  N   L  + D   N L ++    R   L  
Sbjct: 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI-DLRFNKLTKLSDDFRATTLPY 514

Query: 240 LRTL-------AKFVVGKGNCSGLKELRSLMHL 265
           L  +       +KF     N S LK        
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 52/224 (23%)

Query: 158 ELPNDIAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRLKKLFPDIGN 212
            +P+ I +L  L  L       +V       + +S   + +       +  K        
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 213 LV--NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGL-KELRSLMHLQEKL 269
               +L     +     + +            + +      N + + K +  L  L++  
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQL---SNNITFVSKAVMRLTKLRQ-F 211

Query: 270 TISG--LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY 327
            +        N  E  +       ++ +    KW N                        
Sbjct: 212 YMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN------------------------ 247

Query: 328 GGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNL 370
                         ++L  +   NC   T LP  +  LP ++ +
Sbjct: 248 -------------LKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKL--FPDIGN 212
           L            L  L+ ++  I  +  +       ++ L   +  +LK +    D  +
Sbjct: 342 LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKS 400

Query: 213 LVNLRHLKDSH-------SNLLEEMPLRIGKLTSLRTL 243
           +  +  +  S+           + +     K  ++ ++
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 156 LHELPNDIA--ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEY-----CYRLKKLFP 208
           L +L +D     L +L  +D S+ +             L+   +         R  + +P
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 209 D-IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           + I    +L  L    SN + ++  +I    ++  L
Sbjct: 560 EGITLCPSLTQL-QIGSNDIRKVNEKI--TPNISVL 592

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 6e-10
 Identities = 51/274 (18%), Positives = 91/274 (33%), Gaps = 44/274 (16%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
           NL  L+ L    + I     L  L N       LR L  +   I  +S  ++ L  + +L
Sbjct: 86  NLVKLTNLYIGTNKITDISALQNLTN-------LRELYLNEDNISDIS-PLANLTKMYSL 137

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            L            + N+  L +L     + ++++   I  LT L +L    +       
Sbjct: 138 NLGAN-HNLSDLSPLSNMTGLNYL-TVTESKVKDVT-PIANLTDLYSL---SLNYNQIED 191

Query: 256 LKELRSLMHLQEKLT-----ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVF 310
           +  L SL  L    T     I+ +             +    +L +L     NKI     
Sbjct: 192 ISPLASLTSLHY-FTAYVNQITDITP-----------VANMTRLNSLKIG-NNKITD--L 236

Query: 311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
             L     L  L++     +   A         L +L   + NQ + +  + +L  L +L
Sbjct: 237 SPLANLSQLTWLEIGTNQISDINAV---KDLTKLKMLNVGS-NQISDISVLNNLSQLNSL 292

Query: 371 VIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED 404
            +    ++ +  +E  G        +L TL    
Sbjct: 293 FLNN-NQLGNEDMEVIGG-----LTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 9e-09
 Identities = 50/252 (19%), Positives = 91/252 (36%), Gaps = 40/252 (15%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
            L  ++ L    + +   +G+  L N       L YL+ +   I  +S  +S L  L  L
Sbjct: 42  ELESITKLVVAGEKVASIQGIEYLTN-------LEYLNLNGNQITDISP-LSNLVKLTNL 93

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            +    ++  +   + NL NLR L   + + + ++   +  LT + +L   +    N S 
Sbjct: 94  YIGTN-KITDI-SALQNLTNLREL-YLNEDNISDIS-PLANLTKMYSL--NLGANHNLSD 147

Query: 256 LKELRSLMHLQE------KLT-ISGLENV----------NDAEDAKEAQLNGKKKLEALS 298
           L  L ++  L        K+  ++ + N+          N  ED     L     L   +
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205

Query: 299 PKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTL 358
             + N+I       +     L  LK+     T        ++   L  L     NQ + +
Sbjct: 206 -AYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGT-NQISDI 258

Query: 359 PSVGHLPSLKNL 370
            +V  L  LK L
Sbjct: 259 NAVKDLTKLKML 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.6 bits (135), Expect = 2e-08
 Identities = 44/259 (16%), Positives = 96/259 (37%), Gaps = 52/259 (20%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN----------------DIAELKHLRYLDFSHTAI 179
           NL +L  L    D I     L  L                   ++ +  L YL  + + +
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV 167

Query: 180 EVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS 239
           + ++  ++ L +L +L L Y  +++ +   + +L +L +   ++ N + ++   +  +T 
Sbjct: 168 KDVTP-IANLTDLYSLSLNYN-QIEDI-SPLASLTSLHYF-TAYVNQITDITP-VANMTR 222

Query: 240 LRTLAKFVVGKGNCSGLKELRSLMHLQE------KLT-ISGLENVNDAEDAKEAQLNGKK 292
           L +L    +G    + L  L +L  L        +++ I+ ++++               
Sbjct: 223 LNSLK---IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL--------------T 265

Query: 293 KLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG-YGGTKFPAWLGQSSFENLVVLRFKN 351
           KL+ L+    N+I      +L     L  L +     G +    +G     NL  L    
Sbjct: 266 KLKMLN-VGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG--LTNLTTLFLSQ 320

Query: 352 CNQCTTLPSVGHLPSLKNL 370
            N  T +  +  L  + + 
Sbjct: 321 -NHITDIRPLASLSKMDSA 338

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 35/206 (16%)

Query: 172 LDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP 231
           L      I  +    + L      +L+    +  +      L ++  L       +  + 
Sbjct: 5   LATLPAPINQI-FPDADLAEGIRAVLQKA-SVTDV-VTQEELESITKL-VVAGEKVASIQ 60

Query: 232 LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQE------KLT-ISGLENVNDAEDAK 284
             I  LT+L  L    +     + +  L +L+ L        K+T IS L+N+       
Sbjct: 61  -GIEYLTNLEYLN---LNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNL------- 109

Query: 285 EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENL 344
                    L  L     + I       L     +  L +         + L       L
Sbjct: 110 -------TNLRELY-LNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSPLSN--MTGL 157

Query: 345 VVLRFKNCNQCTTLPSVGHLPSLKNL 370
             L     ++   +  + +L  L +L
Sbjct: 158 NYLTVTE-SKVKDVTPIANLTDLYSL 182

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 42/235 (17%), Positives = 81/235 (34%), Gaps = 51/235 (21%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
           +L  ++ L++   G+   EG+  L N       L  L+     I  L+  +  L  +  L
Sbjct: 39  DLDGITTLSAFGTGVTTIEGVQYLNN-------LIGLELKDNQITDLAP-LKNLTKITEL 90

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            L     LK +   I  L +++ L D  S  + ++   +  L++L+ L    +     + 
Sbjct: 91  ELSGN-PLKNVSA-IAGLQSIKTL-DLTSTQITDVT-PLAGLSNLQVL---YLDLNQITN 143

Query: 256 LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315
           +  L  L +LQ  L+I                                ++       L  
Sbjct: 144 ISPLAGLTNLQY-LSIG-----------------------------NAQVSD--LTPLAN 171

Query: 316 HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
              L  LK      +        +S  NL+ +  KN NQ + +  + +  +L  +
Sbjct: 172 LSKLTTLKADDNKISDISPL---ASLPNLIEVHLKN-NQISDVSPLANTSNLFIV 222

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 39/207 (18%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN---------------DIAELKHLRYLDFSHTAIE 180
            L  +  + +    IK  +G+  LPN                +A LK+L +L      ++
Sbjct: 44  ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL 240
            L  S+  L  L++L LE+   +  +   + +L  L  L    +N + ++   + +LT L
Sbjct: 104 DL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESL-YLGNNKITDIT-VLSRLTKL 158

Query: 241 RTLAKFVVGKGNCSG--LKELRSLMHLQ--EKLTISGLENVNDAEDAKEAQLNGKKKLEA 296
            TL        +     + ++  L  L   + L +S     N   D +   L G K L+ 
Sbjct: 159 DTL--------SLEDNQISDIVPLAGLTKLQNLYLSK----NHISDLRA--LAGLKNLDV 204

Query: 297 LSPKWGNKIQTCVFEMLKPHYGLKELK 323
           L   +  +                 +K
Sbjct: 205 LE-LFSQECLNKPINHQSNLVVPNTVK 230

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 37/223 (16%), Positives = 74/223 (33%), Gaps = 32/223 (14%)

Query: 160 PNDIAE------LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213
           P  I +             +    ++     + + L ++  +I      +K +   I  L
Sbjct: 11  PTPIKQIFSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNS-DIKSVQG-IQYL 67

Query: 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISG 273
            N+  L   + N L ++   +  L +L  L    + +     L  L+ L  L+  L++  
Sbjct: 68  PNVTKL-FLNGNKLTDIK-PLANLKNLGWL---FLDENKVKDLSSLKDLKKLK-SLSLEH 121

Query: 274 --LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTK 331
             + ++N         L    +LE+L     NKI      +L     L  L +     + 
Sbjct: 122 NGISDING--------LVHLPQLESLYLG-NNKITD--ITVLSRLTKLDTLSLEDNQISD 170

Query: 332 FPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374
                  +    L  L     N  + L ++  L +L  L +  
Sbjct: 171 IV---PLAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 16/108 (14%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPN---------------DIAELKHLRYLDFSHTAIE 180
           +L  L  L    + I     L  L                  +A L  L+ L  S   I 
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLE 228
            L   ++ L NL  L L     L K      NLV    +K++  +L+ 
Sbjct: 192 DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 62/404 (15%), Positives = 122/404 (30%), Gaps = 129/404 (31%)

Query: 262 LMHLQEKLTISGLENVNDAEDA-------KEAQ--LNGKKKLEA-------LSPKWGNKI 305
           L   ++   +   +   D +D        +E    +  K  +         L  K    +
Sbjct: 22  LSVFEDAF-VDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79

Query: 306 QTCVFEMLKPHYGL-----------KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ 354
           Q  V E+L+ +Y               +  R Y   +   +     F    V R +   +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 355 CTTLPSVGHLPSLK---NLVIKGMAKV-KSV-GLEFCGNY-----------------CSE 392
                    L  L+   N++I G+    K+   L+ C +Y                 C+ 
Sbjct: 140 LRQ-----ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 393 P---FPSLETLCFEDMQEWEERIGLS---IVRCPKLKGRLPQRFSSLE------------ 434
           P      L+ L ++    W  R   S    +R   ++  L +   S              
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 435 ------------RIVITS-----CEQLLVSYTALPPLCELEIDGFSE-----LFL-ILQI 471
                       +I++T+      + L  + T    L +      +      L L  L  
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDEVKSLLLKYLDC 313

Query: 472 QGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLL-VYIAEGGEFPQL--ESL 528
                R + LP+E+      +            R+S++   +   +A    +  +  + L
Sbjct: 314 -----RPQDLPREVL---TTNPR----------RLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 529 -----SFVGNLTSLERLEL-PRCPVLRSFPENVLPPSLVYLSIY 566
                S +  L   E  ++  R  V   FP +   P+++ LS+ 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTIL-LSLI 395

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 81/576 (14%), Positives = 158/576 (27%), Gaps = 213/576 (36%)

Query: 50  DERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDL 109
               + L W      Q E   K +EE  R +++ L S    +  +   S  +M  +  + 
Sbjct: 61  VSGTLRLFWTLL-SKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQPS--MMTRMYIE- 114

Query: 110 ACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHL 169
                       +  +  N+ + F++   ++S          R +   +L   + EL+  
Sbjct: 115 ----------QRDRLY--NDNQVFAK--YNVS----------RLQPYLKLRQALLELRPA 150

Query: 170 RYLDFSHTAIEVLSESVSTLYNL-----QTLILEYC--YRLKKLFPD------IGN---- 212
           + +                +  +       + L+ C  Y+++           + N    
Sbjct: 151 KNV---------------LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 213 ------LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLK-ELRSLMHL 265
                 L  L +  D +     +    I               K     ++ ELR L+  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNI---------------KLRIHSIQAELRRLLKS 240

Query: 266 QEK---LTISGLENVNDAEDAKEAQLNGKKKL----------EALSPKWGNKIQTCVFEM 312
           +     L +  L NV +A+       N   K+          + LS        T    +
Sbjct: 241 KPYENCLLV--LLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAA-----TTTHISL 291

Query: 313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS--VGHLPSLKNL 370
                 L   +V+         +L     +               LP   +   P     
Sbjct: 292 DHHSMTLTPDEVKSL----LLKYLDCRPQD---------------LPREVLTTNP----R 328

Query: 371 VIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRF 430
            +  +A+    G              L T        W+       V C KL        
Sbjct: 329 RLSIIAESIRDG--------------LATW-----DNWKH------VNCDKLT------- 356

Query: 431 SSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQ 490
           + +E            S   L P        + ++F  L          + P    IP  
Sbjct: 357 TIIE-----------SSLNVLEP------AEYRKMFDRL---------SVFPPSAHIPTI 390

Query: 491 --------------ESLLDGLQKLSHITRISMVGSLLVY-IAEGGEFPQLESLSFVGNLT 535
                           +++ L K S + +     ++ +  I        LE    + N  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-------YLELKVKLENEY 443

Query: 536 SLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPYL 571
           +L R  +    + ++F  + L P   YL  Y   ++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPP--YLDQYFYSHI 477

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 36/301 (11%), Positives = 74/301 (24%), Gaps = 86/301 (28%)

Query: 12  YALFKGFRGALGVSYYCLLSY-VKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYG 70
           +         +  S   L     ++ F   S  P         + L+W            
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW-----------F 397

Query: 71  KQMEEFGRKSFQGLHSRSFFQQSKIDASRFLMHDLIHDLACWASGE-------ICWCMES 123
             ++         LH  S  ++     S   +  +  +L      E       +      
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKVKLENEYALHRSIV------ 450

Query: 124 TWDGNNERRFSRNLRHLSYLTSRFDG-IKRFEGLH----ELPNDIAELKHLRYLDF---- 174
                +     +       +    D       G H    E P  +   + + +LDF    
Sbjct: 451 -----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLE 504

Query: 175 -----SHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE 229
                  TA       ++TL  L+       Y+               ++ D+     E 
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF------YK--------------PYICDND-PKYER 543

Query: 230 MPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDA---EDAKEA 286
           +         +  +  F+          +   L+ +        L   ++A   E  K+ 
Sbjct: 544 L---------VNAILDFLPKIEENLICSKYTDLLRI-------ALMAEDEAIFEEAHKQV 587

Query: 287 Q 287
           Q
Sbjct: 588 Q 588

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 41/240 (17%), Positives = 87/240 (36%), Gaps = 32/240 (13%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GN 212
            + E+P+D+   ++   L F  T + V+ +   S   +L+ + +     L+ +  D+  N
Sbjct: 20  KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77

Query: 213 LVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTLAKF-----VVGKGNCSGLKELRSLMHLQ 266
           L  L  ++   +N L  +       L +L+ L         +   +     +   L  +Q
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQ 136

Query: 267 EKLTISGLE----------------NVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVF 310
           + + I  +E                N N  ++   +  NG +  E       N ++    
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN-NNLEELPN 195

Query: 311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
           ++    +G     +     T+  + L     ENL  LR ++      LP++  L +L   
Sbjct: 196 DVF---HGASGPVILDISRTRIHS-LPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEA 251

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 45/221 (20%), Positives = 64/221 (28%), Gaps = 27/221 (12%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHL 219
             D+     L  LD S   I  L   VS    L  L  +    + KL  D+   + L  L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKL--DLNQNIQLTFL 217

Query: 220 KDSHSNLLEEMPLRIGKLTSLRTLA----KFV-VGKGNCSGLKELRSLMHLQEKLTISGL 274
            D  SN L E+   +  LT L            +     S L  L  +     ++ ++  
Sbjct: 218 -DCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 275 EN-----VNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGG 329
                         KE  +    +L  L       I             L  L +     
Sbjct: 275 TQLIYFQAEGCRKIKELDVTHNTQLYLLD-CQAAGITELDLSQNP---KLVYLYLNNTEL 330

Query: 330 TKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
           T+       S    L  L   N        SVG +P+L N 
Sbjct: 331 TELDV----SHNTKLKSLSCVN-AHIQDFSSVGKIPALNNN 366

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214
            L  L + + +L  + +LD SH  +  L  +++ L  L+ L       L+ +   + NL 
Sbjct: 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENV-DGVANLP 508

Query: 215 NLRHLKDSHSNLLEEMP--LRIGKLTSLRTL 243
            L+ L    +N L++      +     L  L
Sbjct: 509 RLQEL-LLCNNRLQQSAAIQPLVSCPRLVLL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 19/129 (14%)

Query: 133 FSRNLRHLSYLTSRFDGIKRFEGLHEL----------------PNDIAELKHLRYLDFSH 176
             ++L+ L++ +++         L  L                         L+YLD S 
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 177 TAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD--IGNLVNLRHLKDSHSNLLEEMPLRI 234
             +  +S +   L  L+ L  ++   LK++       +L NL +L  SH++         
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 235 GKLTSLRTL 243
             L+SL  L
Sbjct: 442 NGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 157 HELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLV 214
           H           L+ LD S   I+ +   +  +L +L TLIL     ++ L       L 
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLS 100

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           +L+ L    +NL       IG L +L+ L
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKEL 129

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNL 192
              L HL +  S    +  F     L N       L YLD SHT   V    + + L +L
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRN-------LIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 193 QTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           + L +      +   PDI   L NL  L  S   L +  P     L+SL+ L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 15/124 (12%)

Query: 126 DGNNERRFSRNLRHLSYLT---SRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-- 180
              +E     +LR+L YL    +                    L  L  L  +  + +  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVA--------FNGIFNGLSSLEVLKMAGNSFQEN 460

Query: 181 VLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGKLTS 239
            L +  + L NL  L L  C +L++L P    +L +L+ L  SH+N           L S
Sbjct: 461 FLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519

Query: 240 LRTL 243
           L+ L
Sbjct: 520 LQVL 523

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 72/469 (15%), Positives = 142/469 (30%), Gaps = 92/469 (19%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD-IGNLVNLR 217
             D+    +L+ L    + I  +      +L +L+ L L     L  L     G L +L+
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLK 101

Query: 218 HLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSGLKELRS-----LMHLQEKLT 270
           +L +   N  + + +      LT+L+TL       GN     E+R      L  L E L 
Sbjct: 102 YL-NLMGNPYQTLGVTSLFPNLTNLQTL-----RIGNVETFSEIRRIDFAGLTSLNE-LE 154

Query: 271 ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGT 330
           I          + +   L   + +  L+    ++    +         ++ L++R     
Sbjct: 155 IKA----LSLRNYQSQSLKSIRDIHHLTLH-LSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 331 KFPAW----------LGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLK--NLVIKGMAKV 378
           +F             + + +F   V+           L  +  L  ++  +  + G+   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 379 KSVGLEFCGNYCSEPFPSLETLCFEDMQEWE------------ERIGLSIVRCPKLKGRL 426
                +           ++  L       +             +RI +   +   +    
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSF 329

Query: 427 PQRFSSLERIVITSCE------QLLVSYTALPPLCEL--------EIDGFSELFL----- 467
            Q   SLE + ++         +      A P L  L         +    E+ L     
Sbjct: 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 468 -ILQIQGWRSRAEILPQEIRIPNQ-ESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQL 525
             L I                 N    + D  Q    +  +++  + +  +        L
Sbjct: 390 TSLDISR---------------NTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-PQTL 433

Query: 526 ESL--------SFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIY 566
           E L        SF   L  L+ L + R   L++ P+  L P L+ + I 
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPDASLFPVLLVMKIS 481

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 40/254 (15%), Positives = 83/254 (32%), Gaps = 57/254 (22%)

Query: 128 NNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV- 186
            +E      L  +  +T R   I +F   ++L    + L+ ++ +   ++ + ++  S  
Sbjct: 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330

Query: 187 STLYNLQTLILEYCYRLKKLFPD----IGNLVNLRHLKDSHSNL--LEEMPLRIGKLTSL 240
             L +L+ L L     + + +       G   +L+ L  S ++L  +++    +  L +L
Sbjct: 331 QHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389

Query: 241 RTLA----KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEA 296
            +L      F     +C   +++R L +L                               
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFL-NLS------------------------------ 418

Query: 297 LSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCT 356
                   I+     + +    L+ L V       F  +L       L  L     N+  
Sbjct: 419 -----STGIRVVKTCIPQ---TLEVLDVSNNNLDSFSLFL-----PRLQELYISR-NKLK 464

Query: 357 TLPSVGHLPSLKNL 370
           TLP     P L  +
Sbjct: 465 TLPDASLFPVLLVM 478

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 66/417 (15%), Positives = 116/417 (27%), Gaps = 93/417 (22%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GN 212
               +P+ +     ++ LD S   I  +         NLQ LIL+   R+  +  D   +
Sbjct: 16  SFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYS 72

Query: 213 LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELR----SLMHLQEK 268
           L +L HL D   N L  +               F    G  S LK L         L   
Sbjct: 73  LGSLEHL-DLSDNHLSSLSSSW-----------F----GPLSSLKYLNLMGNPYQTLGVT 116

Query: 269 LTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG 328
                L N                 L+ L                     L EL+++   
Sbjct: 117 SLFPNLTN-----------------LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 329 GTKFPAWLGQSSFENLVVLRFKN--CNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFC 386
              + +     S +++  +       ++   L        L ++            LE  
Sbjct: 160 LRNYQS----QSLKSIRDIHHLTLHLSESAFLLE-IFADILSSVRY----------LELR 204

Query: 387 GNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKG--RLPQRFSSLERIVITSCEQL 444
               +    S   +        +     S++         +L +    L  +    C   
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC--- 261

Query: 445 LVSYTALPPLCELEIDGFSELFLI--LQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSH 502
             +   L      E D  SEL  +  + I+        +PQ     +  ++   L+K+  
Sbjct: 262 --TLNGLGDFNPSESDVVSELGKVETVTIRRLH-----IPQFYLFYDLSTVYSLLEKV-- 312

Query: 503 ITRISMVGSLLVYIAEG--GEFPQLESL---------------SFVGNLTSLERLEL 542
             RI++  S +  +          LE L               +  G   SL+ L L
Sbjct: 313 -KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 46/250 (18%), Positives = 79/250 (31%), Gaps = 65/250 (26%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L ELP     LK L   + +  A+  L         L+ L +    +L+KL P++ N   
Sbjct: 103 LTELPELPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNN-QLEKL-PELQNSSF 154

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSL-------RTLAKFVVGKGNCSGLKELR-------- 260
           L+ + D  +N L+++P     L  +         L +      N   L  +         
Sbjct: 155 LKII-DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL----QNLPFLTAIYADNNSLKK 209

Query: 261 ---SLMHLQEKLTISG--LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKP 315
                + L+  +      LE + +        L     L  +     N +   + ++   
Sbjct: 210 LPDLPLSLES-IVAGNNILEELPE--------LQNLPFLTTIYAD-NNLL-KTLPDLPP- 257

Query: 316 HYGLKELKVRGYGGTKFPAWLGQ---------------SSFENLVVLRFKNCNQCTTLPS 360
              L+ L VR    T  P                        NL  L   + N+  +L  
Sbjct: 258 --SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS-NEIRSLC- 313

Query: 361 VGHLPSLKNL 370
               PSL+ L
Sbjct: 314 -DLPPSLEEL 322

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           +  L +       L  L+ S+  +  L         L+ LI  +   L ++     NL  
Sbjct: 309 IRSLCD---LPPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQ 361

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKEL 259
           L        N L E P     +  LR  +           LK+L
Sbjct: 362 L----HVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 33/232 (14%), Positives = 62/232 (26%), Gaps = 54/232 (23%)

Query: 159 LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRH 218
           +         L+      + +  +      + +       +    +   P  G    +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 219 LK------------DSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKEL-RSLMHL 265
            +            + ++  L  +P     L SL           +C+ L EL      L
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVA---------SCNSLTELPELPQSL 113

Query: 266 QEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPK------WGNKIQTC-VFEMLKPHYG 318
           +  L +                L     L  L P         N+++     +       
Sbjct: 114 K-SLLVDNN------------NLK---ALSDLPPLLEYLGVSNNQLEKLPELQNSS---F 154

Query: 319 LKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
           LK + V      K P         +L  +   N NQ   LP + +LP L  +
Sbjct: 155 LKIIDVDNNSLKKLPDLPP-----SLEFIAAGN-NQLEELPELQNLPFLTAI 200

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 12/86 (13%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L E+P      ++L+ L   +  +    +   ++ +L+         L ++     NL  
Sbjct: 349 LAEVP---ELPQNLKQLHVEYNPLREFPDIPESVEDLR-----MNSHLAEVPELPQNLKQ 400

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSLR 241
           L       +N L E P     +  LR
Sbjct: 401 L----HVETNPLREFPDIPESVEDLR 422

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 40/225 (17%), Positives = 74/225 (32%), Gaps = 60/225 (26%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV 214
            L  LP+++     +  L+ +  A+  L E  +   +L+ L      RL  L     +L 
Sbjct: 70  NLSSLPDNL--PPQITVLEITQNALISLPELPA---SLEYLDACDN-RLSTLPELPASLK 123

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG--LKELRSLMHLQEKLTIS 272
           +L    D  +N L  +P     L  +           N     L  L  L    E L++ 
Sbjct: 124 HL----DVDNNQLTMLPELPALLEYI-----------NADNNQLTMLPELPTSLEVLSVR 168

Query: 273 GLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF 332
                                         N++ T + E+ +    L+ L V        
Sbjct: 169 -----------------------------NNQL-TFLPELPE---SLEALDVSTNLLESL 195

Query: 333 PAWLGQ--SSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKG 374
           PA   +   S E  +  R +  N+ T +P ++  L     ++++ 
Sbjct: 196 PAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILE-YCY--RLKKLFPDIGN 212
           L  LP      + L  LD S   +E L       ++ +   +   C   R+  +  +I +
Sbjct: 172 LTFLP---ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228

Query: 213 LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           L     +     N L           + +  
Sbjct: 229 LDPTCTI-ILEDNPLSSRIRESLSQQTAQPD 258

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 13/112 (11%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQT 194
           NL +L++L     GI    G   +P  IA+L  L YL  +HT +   + + +S +  L T
Sbjct: 74  NLPYLNFLY--IGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129

Query: 195 LILEYCYRLKKLF----PDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT 242
           L   Y      L     P I +L NL  +    + +   +P   G  + L T
Sbjct: 130 LDFSYN----ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 159 LPNDIAELKHLRYLDFSHTAIE---VLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLV 214
           L +   +   +  LD S   +     +  S++ L  L  L +     L    P  I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            L +L  +H+N+   +P  + ++ +L TL
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFPDI 210
           R  G  ++P   A L  L ++D S   +E   S    +  N Q + L     L      +
Sbjct: 185 RLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKV 240

Query: 211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           G   NL  L   ++ +   +P  + +L  L +L
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESV--STLYNLQTLILEYCYRLKKLFPDI-GN 212
           +  + ++   L+ L +LDF H+ ++ +SE     +L NL  L + +    +  F  I   
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNG 443

Query: 213 LVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 243
           L +L  LK + ++  E     I  +L +L  L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 25/128 (19%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHEL----------------PNDIAELKHLRYLDFSHTA 178
           ++L+ L++ +++         L  L                         L+YLD S   
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 179 IEVLSESVSTLYNLQTLILEYCYRLKKLFPDI--GNLVNLRHLKDSHSNLLEEMPLRI-G 235
           +  +S +   L  L+ L  ++   LK++       +L NL +L D            I  
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL-DISHTHTRVAFNGIFN 442

Query: 236 KLTSLRTL 243
            L+SL  L
Sbjct: 443 GLSSLEVL 450

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 76/470 (16%), Positives = 140/470 (29%), Gaps = 99/470 (21%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLR 217
                    L+ LD S   I+ + +    +L +L TLIL     ++ L       L +L+
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQ 103

Query: 218 HLKDSHSNLLEEMPLRIGKLTSLRTL-------AKFVVGK--GNCSGLKELR----SLMH 264
            L    +NL       IG L +L+ L         F + +   N + L+ L      +  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 265 LQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV 324
           +     +  L  +     + +  LN    +  + P          F+ ++    L +L +
Sbjct: 164 IYCT-DLRVLHQMPLLNLSLDLSLN---PMNFIQPG--------AFKEIR----LHKLTL 207

Query: 325 RGYGGT-----KFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVK 379
           R    +          L       LV+  F+N            L  L NL I+     +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEF---R 263

Query: 380 SVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVIT 439
              L++  +   + F  L  +    +        ++I R               + + + 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLV------SVTIERVKDFSY-----NFGWQHLELV 312

Query: 440 SCEQLLVSYTALPPLCEL--------EIDGFSEL----FLIL---QIQGWRSRAEILPQE 484
           +C+        L  L  L              +L    FL L    +    S      Q 
Sbjct: 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL----SFKGCCSQS 368

Query: 485 IRIPNQESLLD-----------GLQKLSHITRISMVGSLLVYIAEGGEFPQLESL----- 528
                    LD               L  +  +    S L  ++E   F  L +L     
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 529 ----------SFVGNLTSLERLELPRCPVLRSFPENVLP--PSLVYLSIY 566
                          L+SLE L++       +F  ++     +L +L + 
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQ 193
            +L+ L  L    + I+ F+    LP   + L +L +LD S   I+ +  +    L+ + 
Sbjct: 121 GHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 194 TLILE---YCYRLKKLFPDIGNLVNLRHLKDSHSNL-LEEMPLRIGKLTSLRTLAKFVVG 249
            L L        +  + P     + L  L   ++   L  M   I  L  L      +  
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 250 KGNCSGLKEL-RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKW--GNKIQ 306
             N   L++  +S +     LTI     +   +   +  ++    L  +S        I+
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEF-RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 307 TCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPS 366
               +    ++G + L++      +FP        ++L  L F + N+     S   LPS
Sbjct: 296 R--VKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTS-NKGGNAFSEVDLPS 348

Query: 367 LKNL 370
           L+ L
Sbjct: 349 LEFL 352

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 37/215 (17%)

Query: 163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDS 222
              L +    +    ++  L  S   L  +Q    +    ++ L   +    NL+ L  S
Sbjct: 15  DPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG-MQFFTNLKELHLS 71

Query: 223 HSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG--LKELRSLMHLQ-EKLTISG--LENV 277
           H N + ++   +  LT L  L        + +   LK L  +      +L +    L + 
Sbjct: 72  H-NQISDLS-PLKDLTKLEEL--------SVNRNRLKNLNGIPSACLSRLFLDNNELRDT 121

Query: 278 NDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLG 337
           +         L   K LE LS +  NK+++    ML     L+ L + G   T       
Sbjct: 122 DS--------LIHLKNLEILSIR-NNKLKS--IVMLGFLSKLEVLDLHGNEITNTGGL-- 168

Query: 338 QSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVI 372
            +  + +  +      +C   P    +     L I
Sbjct: 169 -TRLKKVNWIDLTG-QKCVNEP----VKYQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 39/190 (20%), Positives = 59/190 (31%), Gaps = 28/190 (14%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
            L  +         I+   G+    N       L+ L  SH  I  L   +  L  L+ L
Sbjct: 39  ELSGVQNFNGDNSNIQSLAGMQFFTN-------LKELHLSHNQISDL-SPLKDLTKLEEL 90

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
            +    RLK L         L  L   ++ L +   L    L +L  L        +   
Sbjct: 91  SVNRN-RLKNLNG--IPSACLSRLFLDNNELRDTDSL--IHLKNLEIL--------SIRN 137

Query: 256 --LKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML 313
             LK +  L  L  KL +  L   N+  +     L   KK+  +    G K      +  
Sbjct: 138 NKLKSIVMLGFLS-KLEVLDLHG-NEITNTGG--LTRLKKVNWIDLT-GQKCVNEPVKYQ 192

Query: 314 KPHYGLKELK 323
              Y    +K
Sbjct: 193 PELYITNTVK 202

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 44/228 (19%)

Query: 156 LHELPNDI-AELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GN 212
           + +LP  +    + +  L+ +   IE +     +  + +Q L + +   ++ L P +  N
Sbjct: 57  MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN 115

Query: 213 LVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTLA----KF-VVGKGNCSGLKELRSLMHLQ 266
           +  L  L     N L  +P  I      L TL+        +          L++L  L 
Sbjct: 116 VPLLTVL-VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLS 173

Query: 267 ----EKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322
                 + +S + ++           N       +S    N + T     L     ++EL
Sbjct: 174 SNRLTHVDLSLIPSL--------FHAN-------VS---YNLLST-----LAIPIAVEEL 210

Query: 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
                                L +L+ ++ N  T    + + P L  +
Sbjct: 211 DASHNSINVVRG----PVNVELTILKLQH-NNLTDTAWLLNYPGLVEV 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDIGNLV 214
           L +    +     L  +D S+  +E +       +  L+ L +    RL  L      + 
Sbjct: 238 LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIP 295

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            L+ L  SH N L  +     +   L  L
Sbjct: 296 TLKVLDLSH-NHLLHVERNQPQFDRLENL 323

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L  L      +  L+ LD SH  +  +  +      L+ L L++   +  L   +     
Sbjct: 284 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTL--KLSTHHT 340

Query: 216 LRHLKDSHSNL 226
           L++L  SH++ 
Sbjct: 341 LKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNLV 214
           ++ +   +     L  L   H  +   +  +     L  + L Y   L+K+       + 
Sbjct: 217 INVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQ 272

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            L  L  S+ N L  + L    + +L+ L
Sbjct: 273 RLERLYISN-NRLVALNLYGQPIPTLKVL 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           ++++   +     L+ LD S   +  +     +   +  + L    +L  +   +    N
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN 238

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSLR 241
           L H  D   N      LR     + R
Sbjct: 239 LEHF-DLRGNGFHCGTLRDFFSKNQR 263

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 34/223 (15%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD-IGN 212
            +HE+  +       +    + ++++    S+  + +N++ L L     L ++    +  
Sbjct: 1   AIHEIKQN---GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAP 56

Query: 213 LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG--LKELRSLMHLQEKLT 270
              L  L +  SN+L E    +  L++LRTL        + +   ++EL     ++  L 
Sbjct: 57  FTKLELL-NLSSNVLYETL-DLESLSTLRTL--------DLNNNYVQELLVGPSIET-LH 105

Query: 271 ISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---CVFEMLKPHYGLKELKVRGY 327
            +     N+      ++  GKK +  L+    NKI                ++ L ++  
Sbjct: 106 AAN----NNISRVSCSRGQGKKNIY-LA---NNKITMLRDLDEGCRS---RVQYLDLKLN 154

Query: 328 GGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
                      +S + L  L  +  N    +        LK L
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTL 196

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEY----CYRLKKLFPDIG 211
           L  +  +      + ++   +  + ++ +++    NL+   L      C  L+  F    
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF---S 259

Query: 212 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQ 266
               ++ +       L         + +L     +            L +L H  
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD-IGNLVNLR 217
                 L HL  L  +   I+  S    S L +L+ L+     +L  L    IG L+ L+
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLK 131

Query: 218 HLKDSHSNLLEEMPLR--IGKLTSLRTL 243
            L  +H N +    L      LT+L  +
Sbjct: 132 KLNVAH-NFIHSCKLPAYFSNLTNLVHV 158

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 32/221 (14%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 158 ELPNDIAELKHLRYLDFSHTAIEVLSESV-----STLYNLQTLILEYCYRLKKLFPDIGN 212
           +LP   + L +L ++D S+  I+ ++ +             +L +     +  +      
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQ 202

Query: 213 LVNLRHLKDSHSNLLEE-MPLRIGKLTSLRTLAKFVVGKGNCSGLKELR--SLMHLQEKL 269
            + L  L    +      M   +  L  L      +    +   L+      +  L +  
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 270 TISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGG 329
                    +       + +    + A+S   G  I+    E +  H+  + L +     
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMS-LAGVSIKY--LEDVPKHFKWQSLSIIRCQL 319

Query: 330 TKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
            +FP          L  L     N+ +       LPSL  L
Sbjct: 320 KQFPT----LDLPFLKSLTLTM-NKGSISFKKVALPSLSYL 355

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 26/131 (19%)

Query: 135 RNLRHLS----YLTSRFDGIKRFEGLHEL---------------PNDIAELKHLRYLDFS 175
             L +L          FDGI  F GL  L                N  A   +L +LD S
Sbjct: 424 EKLLYLDISYTNTKIDFDGI--FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 176 HTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR 233
              +E +S  V  TL+ LQ L + +   L  L       L +L  L D   N +E     
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTL-DCSFNRIETSKGI 539

Query: 234 IGK-LTSLRTL 243
           +     SL   
Sbjct: 540 LQHFPKSLAFF 550

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP--D 209
                            LR+LD S     ++S +   L  LQ L  ++   LK++     
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSA 419

Query: 210 IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
             +L  L +L  S++N   +       LTSL TL
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 74/457 (16%), Positives = 145/457 (31%), Gaps = 76/457 (16%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLR 217
               +    L++LD S   IE +  ++   L++L  LIL     ++   P     L +L 
Sbjct: 49  SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLE 107

Query: 218 HLKDSHSNLLEEMPLR-IGKLTSLRT-------LAKFVVGK--GNCSGLKELR----SLM 263
           +L  +    L  +    IG+L +L+        +    +     N + L  +      + 
Sbjct: 108 NL-VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 264 HLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK 323
            +     +  L        + +  LN    ++ +  +         F+ +K    L EL 
Sbjct: 167 TITVN-DLQFLRENPQVNLSLDMSLN---PIDFIQDQ--------AFQGIK----LHELT 210

Query: 324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGL 383
           +RG   +         +   L V R              +L   +  +++G+  V     
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHR----LILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 384 EFCGNYCS-------EPFPSLETL--------CFEDMQEWEERIGLSIVRCPKLKGRLPQ 428
                              ++  +          ED+ +  +   LSI+RC +LK     
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPTL 325

Query: 429 RFSSLERIVITSCE-QLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRI 487
               L+ + +T  +  +     ALP L  L++   + L               L + + +
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSR-NALSFSGCCSYSDLGTNSL-RHLDL 383

Query: 488 P-NQESLLDG-LQKLSHITRISMVGSLLVYIAEGGEFPQLESL---------------SF 530
             N   ++      L  +  +    S L  + E   F  LE L                 
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 531 VGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSI 565
              LTSL  L++       +   NV     +L +L +
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 11/102 (10%)

Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD- 209
             + +   P+    L++L  LD S+  I  +++ +   L  L+ L L++   L +L+   
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHA 523

Query: 210 --------IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
                   +  L +L  L    +   E        L  L+ +
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV---STLYN 191
             +  L  L    + ++    L E          +R L  S++ +   S +        N
Sbjct: 192 HAIGRLFGL--FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249

Query: 192 LQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           L  L L Y   L  +  D    L  L +    ++N+       +  L ++R L
Sbjct: 250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 43/277 (15%), Positives = 78/277 (28%), Gaps = 61/277 (22%)

Query: 133 FSRNLRHLSYLTS-RFDGIKR--FEGLHEL--------------PNDIAELKHLRYLDFS 175
              N+  L  LT  +   +    F    +L              P    +L  L+ L+  
Sbjct: 23  LPTNITVL-NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81

Query: 176 HTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR 233
           H  +  LS+   +   NL  L L     ++K+  +      NL  L  SH+ L       
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140

Query: 234 IGKLTSLRTL----------AKFVVGKGNCSGLKELR----SLMHLQEKLTISGLENVND 279
             +L +L+ L              +     S LK+L      +           +  +  
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFG 199

Query: 280 AEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF----PAW 335
                   L        L+     ++   + E L        ++      ++        
Sbjct: 200 --------LF-------LN---NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 336 LGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNL 370
                + NL +L     N    +   S   LP L+  
Sbjct: 242 FLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYF 277

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESVST---LYNLQTLILEYCYRLKKLFPD-IGNLVN 215
            N  A +  L+ L     A++ +  S S    L NL  L L     +  +  D +  L  
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEK 505

Query: 216 LRHLKDSHSNL--------LEEMPLRIGKLTSLRTL 243
           L  L   H+NL               +  L+ L  L
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRH 218
            N       L+ LD + T +  L   +  L  L+ L+L    + + L      N  +L H
Sbjct: 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTH 329

Query: 219 LKDSHSNLLEEMPLR-IGKLTSLRTL-------AKFVVGKGNCSGLKELRSL 262
           L    +    E+    +  L +LR L                   L  L+SL
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV--STLYNL 192
           RNL HL  L   ++     +          E   L  LD + T ++V         L+ L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLK-----TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 193 QTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           + L L +   L      +   L  L+HL    ++  +    +   L +L  L
Sbjct: 428 KVLNLSHS-LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL 478

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 75/451 (16%), Positives = 144/451 (31%), Gaps = 89/451 (19%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLR 217
               + L +L +LD +   I  + E    + + L TL+L     L  +          L+
Sbjct: 50  NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALK 108

Query: 218 HLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSG-------LKELRSLMHLQEKL 269
           HL       +  +    +    +L +L                   L +      L+  L
Sbjct: 109 HL-FFIQTGISSIDFIPLHNQKTLESL--------YLGSNHISSIKLPKGFPTEKLKV-L 158

Query: 270 TISG--LENVNDAEDAKEAQLNGKKKLE-ALSPKWGNKIQTCVFEMLKPHYGLKELKVRG 326
                 +  ++  + +    L     L   L+   GN I   +          + L   G
Sbjct: 159 DFQNNAIHYLSKEDMS---SLQQATNLSLNLN---GNDI-AGIEPGAFDSAVFQSLNFGG 211

Query: 327 YGGTK-FPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEF 385
                     L  S+ ++L +  F++ +             +   V +G+ ++    +  
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMD----------DEDISPAVFEGLCEMSVESINL 261

Query: 386 CGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLL 445
             +Y    F ++ +  F      +E   L +     L   LP     L  +     ++L+
Sbjct: 262 QKHY----FFNISSNTFHCFSGLQE---LDLTAT-HLS-ELPSGLVGLSTL-----KKLV 307

Query: 446 VSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEI--------------RIPNQE 491
           +S      LC++    F  L   L I+G   R E+    +               I   +
Sbjct: 308 LSANKFENLCQISASNFPSL-THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 492 SLLDGLQKLSHITRISMVGSLLVYIAEG--GEFPQLESL-------------SFVGNLTS 536
                L+ LSH+  +++  +  + +      E PQLE L             S   NL  
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 537 LERLELPRCPVLRSFPENVLP--PSLVYLSI 565
           L+ L L     L    E +    P+L +L++
Sbjct: 427 LKVLNLSHSL-LDISSEQLFDGLPALQHLNL 456

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 82/515 (15%), Positives = 141/515 (27%), Gaps = 116/515 (22%)

Query: 110 ACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKR-----FEGLHEL----- 159
           +C   G I +         N  +  + L     L   F+ I+      F  L +L     
Sbjct: 1   SCSFDGRIAFYR-----FCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL 55

Query: 160 ----------PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFP 208
                           L +LR LD   + I  L       L++L  L L +C  L     
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVL 114

Query: 209 D---IGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSG--LKELR- 260
                 NL  L  L  S  N +  + L    GKL SL+++        + S   +  +  
Sbjct: 115 KDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSI--------DFSSNQIFLVCE 165

Query: 261 -SLMHLQEK-LTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYG 318
             L  LQ K L+   L   +                  +                     
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV-------------------- 205

Query: 319 LKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGH-LPSLKNLVIKGMAK 377
           L+ L V G G T        ++            +         H +         G+A+
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 378 VKSVGLEFCGNYCS-------EPFPSLETL-------------CFEDMQEWEERIGLSIV 417
                L+    +         E    L+ L              F  +   +  + LS  
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV-LNLSYN 324

Query: 418 RCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFL----ILQIQG 473
              +L          +  I +      ++       L +L+      L L    +  I  
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ-----TLDLRDNALTTIHF 379

Query: 474 WRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGN 533
                         P+   +     KL  + +I++  +L+           L+ L F+  
Sbjct: 380 I-------------PSIPDIFLSGNKLVTLPKINLTANLI--HLSENRLENLDILYFLLR 424

Query: 534 LTSLERLELPRCPVLRSFPENVL---PPSLVYLSI 565
           +  L+ L L +     S   +      PSL  L +
Sbjct: 425 VPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFL 458

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 46/261 (17%), Positives = 84/261 (32%), Gaps = 33/261 (12%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQ 193
             L+ L  L   ++ I +             L +L+ L+ S+  +  L  S    L  + 
Sbjct: 287 ETLKDLKVLNLAYNKINKIA-----DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341

Query: 194 TLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNL--------LEEMPLRIGKLTSLRTLA 244
            + L+    +  +       L  L+ L    + L        + ++ L   KL +L  + 
Sbjct: 342 YIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 245 ----KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEAL--- 297
                  + +     L  L  L+ +   L I  L     +  + +   +    LE L   
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 298 ----SPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCN 353
                  W  ++   VFE L     L+ L +        P  +  S    L  L   + N
Sbjct: 460 ENMLQLAWETELCWDVFEGLS---HLQVLYLNHNYLNSLPPGVF-SHLTALRGLSLNS-N 514

Query: 354 QCTTLPSVGHLPSLKNLVIKG 374
           + T L       +L+ L I  
Sbjct: 515 RLTVLSHNDLPANLEILDISR 535

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 35/228 (15%), Positives = 72/228 (31%), Gaps = 44/228 (19%)

Query: 156 LHELPNDI-AELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GN 212
           + +LP  +    + +  L+ +   IE +     +  + +Q L + +   ++ L P +  N
Sbjct: 63  MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN 121

Query: 213 LVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTLA----KF-VVGKGNCSGLKELRSLMHLQ 266
           +  L  L     N L  +P  I      L TL+        +          L++L  L 
Sbjct: 122 VPLLTVL-VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL-QLS 179

Query: 267 ----EKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322
                 + +S + +                 L   +    N + T     L     ++EL
Sbjct: 180 SNRLTHVDLSLIPS-----------------LFHANV-SYNLLST-----LAIPIAVEEL 216

Query: 323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
                                L +L+ ++ N  T    + + P L  +
Sbjct: 217 DASHNSINVVRG----PVNVELTILKLQH-NNLTDTAWLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDIGNLV 214
           L +    +     L  +D S+  +E +       +  L+ L +    RL  L      + 
Sbjct: 244 LTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIP 301

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            L+ L  SH N L  +     +   L  L
Sbjct: 302 TLKVLDLSH-NHLLHVERNQPQFDRLENL 329

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L  L      +  L+ LD SH  +  +  +      L+ L L++   +  L   +     
Sbjct: 290 LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTL--KLSTHHT 346

Query: 216 LRHLKDSHSNL 226
           L++L  SH++ 
Sbjct: 347 LKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNLV 214
           ++ +   +     L  L   H  +   +  +     L  + L Y   L+K+       + 
Sbjct: 223 INVVRGPV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQ 278

Query: 215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            L  L  S+ N L  + L    + +L+ L
Sbjct: 279 RLERLYISN-NRLVALNLYGQPIPTLKVL 306

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 156 LHELPNDI-AELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDIGNL 213
           L +    +     +++ LD S   +  +S +  +    L+ L L     L +   D+ +L
Sbjct: 22  LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYET-LDLESL 79

Query: 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
             LR L  ++ N ++E    +    S+ TL
Sbjct: 80  STLRTLDLNN-NYVQE----LLVGPSIETL 104

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           ++++   +     L+ LD S   +  +     +   +  + L    +L  +   +    N
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQN 238

Query: 216 LRHLKDSHSNLLEEMPLR--IGKLTSLRTLA 244
           L H  D   N      LR    K   ++T+A
Sbjct: 239 LEHF-DLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 18/171 (10%), Positives = 54/171 (31%), Gaps = 12/171 (7%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEY----CYRLKKLFPDIG 211
           L  +  +      + ++   +  + ++ +++    NL+   L      C  L+  F    
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF---S 259

Query: 212 NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTI 271
               ++ +       L         + +L     +            L +L   +  L  
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL- 318

Query: 272 SGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL 322
           SG  +  +  + +      +++++AL      + +T + ++         L
Sbjct: 319 SGQGSETERLECERENQARQREIDAL----KEQYRTVIDQVTLRKQAKITL 365

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN 215
           L+E   D+  L  LR LD ++  ++ L        +++TL       + ++         
Sbjct: 70  LYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANN-NISRV--SCSRGQG 121

Query: 216 LRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            +++  +++ +     L  G  + ++ L
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYL 149

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 17/138 (12%)

Query: 155 GLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD---IG 211
           G   + + +  L  L  L  S++ I           +L +L L     L         +G
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLG 123

Query: 212 NLVNLRHLKDSHSNLLEEMPLRIG-KLTSLRTLA-----------KFVVGKGNCSGLKEL 259
           +   L+ L  S + L     +  G KL SL  L               V    C  LK L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 260 R-SLMHLQEKLTISGLEN 276
             S   +   + +S   N
Sbjct: 184 AISGNKISGDVDVSRCVN 201

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 43/212 (20%), Positives = 70/212 (33%), Gaps = 43/212 (20%)

Query: 168 HLRYLDFSHTAIEV----LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSH 223
            +  +D S   + V    +S S+ +L  L++L L   + +           +L  L  S 
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH-INGSVSGFKCSASLTSLDLSR 109

Query: 224 SNLLEEMPLR--IGKLTSLRTL---AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVN 278
           ++L   +     +G  + L+ L   +  +   G  SG  +L SL  L             
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD------------ 157

Query: 279 DAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQ 338
                             LS    N I            G  ELK     G K    +  
Sbjct: 158 ------------------LS---ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196

Query: 339 SSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL 370
           S   NL  L   + N  T +P +G   +L++L
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLKKLFP-D 209
             EG  E+P ++  +K L  L      +   +   +S   NL  + L    RL    P  
Sbjct: 453 MLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKW 509

Query: 210 IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           IG L NL  LK S+++    +P  +G   SL  L
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 24/133 (18%), Positives = 39/133 (29%), Gaps = 29/133 (21%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHT----AIEVLSESVSTLYN 191
           +   L +L    +     +   ++     +L  L  LD S      A  V          
Sbjct: 124 SCSGLKFLNVSSN---TLDFPGKVS-GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 192 LQTLILEYCY--------RLKKL-------------FPDIGNLVNLRHLKDSHSNLLEEM 230
           L+ L +            R   L              P +G+   L+HL  S + L  + 
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 231 PLRIGKLTSLRTL 243
              I   T L+ L
Sbjct: 240 SRAISTCTELKLL 252

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 152 RFEGLHELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNLQTLILEYCYRLK-KLFPD 209
              G   +P+ +  L  LR L      +E  + + +  +  L+TLIL++   L  ++   
Sbjct: 429 YLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSG 485

Query: 210 IGNLVNLRHLKDSHSNLLE-EMPLRIGKLTSLRTL 243
           + N  NL  +    +N L  E+P  IG+L +L  L
Sbjct: 486 LSNCTNLNWI-SLSNNRLTGEIPKWIGRLENLAIL 519

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 136 NLRHLSYL---TSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV--STLY 190
           +   L +L    ++  G        +    I+    L+ L+ S          +    L 
Sbjct: 221 DCSALQHLDISGNKLSG--------DFSRAISTCTELKLLNISSNQ---FVGPIPPLPLK 269

Query: 191 NLQTLILEYCYRLKKLFPD--IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
           +LQ L L    +     PD   G    L  L  S ++    +P   G  + L +L
Sbjct: 270 SLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 43/247 (17%), Positives = 75/247 (30%), Gaps = 50/247 (20%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQ 193
           ++LRHL  L    + I+  E           L +L  L+     +  +       L  L+
Sbjct: 85  KHLRHLEILQLSRNHIRTIE-----IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139

Query: 194 TLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTLAKFVVGKG 251
            L L     ++ +       + +LR L       L  +       L++LR L    +   
Sbjct: 140 ELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL---NLAMC 195

Query: 252 NCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE 311
           N   +  L  L+ L E L +S                             GN +      
Sbjct: 196 NLREIPNLTPLIKLDE-LDLS-----------------------------GNHLSAIRPG 225

Query: 312 MLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLR--FKNCNQCTTLPS--VGHLPSL 367
             +    L++L +              ++F+NL  L       N  T LP      L  L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIER----NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 368 KNLVIKG 374
           + + +  
Sbjct: 282 ERIHLHH 288

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 153 FEGLHELPNDIAELKHLRYLDFSH-TAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDI 210
            +G  +  + +   ++L  L   +   ++ L    +  L  L+ L +     L+ + PD 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA 75

Query: 211 -GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
                 L  L +   N LE +  +  +  SL+ L
Sbjct: 76  FHFTPRLSRL-NLSFNALESLSWKTVQGLSLQEL 108

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 73/442 (16%), Positives = 136/442 (30%), Gaps = 68/442 (15%)

Query: 166 LKHLRYLDFSHTAI---EVLSESVSTLYNLQTLILEYCYRL--KKLFPDIGNLVNLRHLK 220
           L+ L+ + F    +   ++   + +   +L+TL L+ C       L   + +   ++ L 
Sbjct: 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL 170

Query: 221 DSHSNLLEEMPLRIGKL----TSLRTLAKFVVGKGNCS--GLKELRSLMHLQEKLTISGL 274
              S+  E+    + +L    TSL  L  ++      S   L+ +         + +   
Sbjct: 171 MEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230

Query: 275 ENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA 334
           E +      K A    +    +L+    +      +  L     L  L +   G  + P 
Sbjct: 231 EILELVGFFKAAANLEEFCGGSLN---EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 335 WLGQSSFENLVVLRFKNCNQCT--TLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE 392
               ++   +  L        T      +   P+L+ L  +    +   GLE    YC  
Sbjct: 288 LFPFAA--QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYC-- 341

Query: 393 PFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVIT-------SCEQLL 445
               L+ L  E   + +       +   +    L Q    LE + +        S E + 
Sbjct: 342 --KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399

Query: 446 VSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITR 505
                L     + +D    +  +    G RS                LL G +KL     
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRS----------------LLIGCKKLRRFAF 443

Query: 506 ISMVGSL----LVYIAEGGEFPQLESLS-------------FVGNLTSLERLELPRCPVL 548
               G L    L YI +    P +  +              F     +L++LE+  C   
Sbjct: 444 YLRQGGLTDLGLSYIGQYS--PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 549 RSFPENVLP--PSLVYLSIYLC 568
                  +   PSL YL +   
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGY 523

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDIGNLVNLRH 218
              ++ L  L  L   H  I  + +     LY L+ L + +   L  + P+    +NL  
Sbjct: 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTS 228

Query: 219 LKDSHSNLLEEMPLR-IGKLTSLRTL 243
           L  +H   L  +P   +  L  LR L
Sbjct: 229 LSITH-CNLTAVPYLAVRHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 156 LHELPND-IAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GN 212
           L  +P   +  L +LR+L+ S+  I  +  S+   L  LQ + L    +L  + P     
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRG 294

Query: 213 LVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 243
           L  LR L +   N L  +   +   + +L TL
Sbjct: 295 LNYLRVL-NVSGNQLTTLEESVFHSVGNLETL 325

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLR 217
            ++ A   HL  L+ +   +  +     + L+NL+TL L    RLK +   +   L NL 
Sbjct: 49  QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLT 107

Query: 218 HLKDSHSNLLEEMPLRI-GKLTSLRTL 243
            L D   N +  +   +   L +L++L
Sbjct: 108 KL-DISENKIVILLDYMFQDLYNLKSL 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD--IGNLVNLRHLKDSH 223
              L+YLD S   +  +S +   L  L+ L  ++   LK++       +L NL +L D  
Sbjct: 77  TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYL-DIS 134

Query: 224 SNLLEEMPLRI-GKLTSLRTL 243
                     I   L+SL  L
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVL 155

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 23/113 (20%), Positives = 47/113 (41%), Gaps = 17/113 (15%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
           +++ L    SR +         +L     E + L +L   +  +  +  ++  L  L+ L
Sbjct: 18  DVKELVLDNSRSNEG-------KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKL 69

Query: 196 ILEYCYRLKKLFPDIG-NLVNLRHLKDSHSNLLEEM----PLRIGKLTSLRTL 243
            L    R+      +     NL HL +   N ++++    PL+  KL +L++L
Sbjct: 70  ELSDN-RVSGGLEVLAEKCPNLTHL-NLSGNKIKDLSTIEPLK--KLENLKSL 118

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQ 193
           R+L HL  L    + I++ E           L  L  L+     + V+       L  L+
Sbjct: 96  RHLHHLEVLQLGRNSIRQIE-----VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR 150

Query: 194 TLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 243
            L L     ++ +       + +L  L       LE +       L +L+ L
Sbjct: 151 ELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL 201

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 12/112 (10%)

Query: 135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQ 193
             L +L YL            + ++P ++  L  L  L+ S      +       L +L+
Sbjct: 193 EGLFNLKYL--NLGMCN----IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 194 TLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 243
            L +    ++  +  +    L +L  L +   N L  +P  +   L  L  L
Sbjct: 246 KLWVMNS-QVSLIERNAFDGLASLVEL-NLAHNNLSSLPHDLFTPLRYLVEL 295

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
            L+   +L    + I++   L  + N       LR L      I+ +    +    L+ L
Sbjct: 46  TLKACKHLALSTNNIEKISSLSGMEN-------LRILSLGRNLIKKIENLDAVADTLEEL 98

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTL 243
            + Y  ++  L   I  LVNLR L    +N +       ++  L  L  L
Sbjct: 99  WISYN-QIASL-SGIEKLVNLRVL-YMSNNKITNWGEIDKLAALDKLEDL 145

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 160 PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLR 217
                  ++L  L      +  +  +  + L  L+ L L    +L+ + P     L  L 
Sbjct: 49  AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108

Query: 218 HLKDSHSNLLEEMPLRI-GKLTSLRTL 243
            L       L+E+   +   L +L+ L
Sbjct: 109 TL-HLDRCGLQELGPGLFRGLAALQYL 134

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 169 LRYLDFSHTAIEVLSESV-STLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNL 226
            + L    T +  +     S L N+  + +     L++L      NL  + H++  ++  
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 227 LEEMPLRI-GKLTSLRTL 243
           L  +      +L  L+ L
Sbjct: 93  LTYIDPDALKELPLLKFL 110

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 147 FDGIKRFEGLHELPNDI------AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYC 200
                R   L+    ++        L  L  LD SH  ++ L     TL  L  L + + 
Sbjct: 51  LMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 201 YRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRTL 243
            RL  L       L  L+ L     N L+ +P  +      L  L
Sbjct: 111 -RLTSLPLGALRGLGELQEL-YLKGNELKTLPPGLLTPTPKLEKL 153

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 28/137 (20%)

Query: 153 FEGLHEL-----------PNDIAELKHLRYLDFSHTAIEVLSESV-STLYNLQTLILEYC 200
            E L+EL             D+     L  L   H  I ++     S L  L+ L L+  
Sbjct: 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 201 YRLKKLFPDIGNLVNLRHLKDSHSNLLEEMP-------LRIGKLTSLRTL-------AKF 246
            +L ++   + +L  L+ +   H+N + ++            K      +         +
Sbjct: 252 -KLSRVPAGLPDLKLLQVV-YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309

Query: 247 VVGKGNCSGLKELRSLM 263
            V       + +  ++ 
Sbjct: 310 EVQPATFRCVTDRLAIQ 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	596
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.82
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.79
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.75
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.64
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.57
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.54
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.48
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.47
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.42
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.39
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.37
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.32
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.29
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.28
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.24
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.21
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.07
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.02
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.98
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.93
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.91
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.87
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.83
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.37
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.98
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.82
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.11
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.09
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.22
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	87.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.23

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.6e-31  Score=292.19  Aligned_cols=382  Identities=17%  Similarity=0.107  Sum_probs=223.8

Q ss_pred             CcccccccCCCcEEeecCCCcc-ccccc-cccCCcCcEEEccccccccccCCcccCCC-ccceeecCCCCcccccccccc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIE-VLSES-VSTLYNLQTLILEYCYRLKKLFPDIGNLV-NLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~-~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~i~~L~-~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      +|..++.+++|++|++++|.+. .+|.. ++.+++|++|++++|.....+|..++++. +|++|++++|...+.+|..+.
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            4444555555555555555554 44433 45555555555555532234555555444 555555555543334444443


Q ss_pred             C--CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616          236 K--LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML  313 (596)
Q Consensus       236 ~--l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  313 (596)
                      .  +++|++|++.++.... .....+..++.|+ .+.+.+..    ..+..+..+..+++|+.|+++.+. .....+..+
T Consensus       390 ~~~~~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~  462 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTG-KIPPTLSNCSELV-SLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQEL  462 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEE-ECCGGGGGCTTCC-EEECCSSE----EESCCCGGGGGCTTCCEEECCSSC-CCSCCCGGG
T ss_pred             hcccCCccEEECCCCcccc-ccCHHHhcCCCCC-EEECcCCc----ccCcccHHHhcCCCCCEEECCCCc-ccCcCCHHH
Confidence            3  4455555544333211 1122344444454 55554422    112223346667778888877665 334455566


Q ss_pred             CCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616          314 KPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS  391 (596)
Q Consensus       314 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~  391 (596)
                      ..+++|+.|++++|... .+|.++.  .+++|+.|++++|...+.+| .++.+++|+.|++++|...+.++..+..    
T Consensus       463 ~~l~~L~~L~L~~N~l~~~~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~----  536 (768)
T 3rgz_A          463 MYVKTLETLILDFNDLTGEIPSGLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD----  536 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG----
T ss_pred             cCCCCceEEEecCCcccCcCCHHHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC----
Confidence            67778888888888765 5666665  67888888888888666666 5778888888888888766677666554    


Q ss_pred             CCCCCcceeecccCccccccc-------------------eeEEec----------------------------------
Q 007616          392 EPFPSLETLCFEDMQEWEERI-------------------GLSIVR----------------------------------  418 (596)
Q Consensus       392 ~~~~~L~~L~l~~~~~l~~~~-------------------~l~l~~----------------------------------  418 (596)
                        +++|+.|++++++--..+.                   ...+.+                                  
T Consensus       537 --l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (768)
T 3rgz_A          537 --CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN  614 (768)
T ss_dssp             --CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred             --CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence              7888888887643211110                   000000                                  


Q ss_pred             --CCCCCCCCC---CCCCCCCEEEEeecc---ChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccccccc
Q 007616          419 --CPKLKGRLP---QRFSSLERIVITSCE---QLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQ  490 (596)
Q Consensus       419 --c~~L~~~~p---~~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p  490 (596)
                        .+.+.|.+|   ..+++|+.|++++|.   .++..+..+++|+.|++++|..       .+              .+|
T Consensus       615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l-------~g--------------~ip  673 (768)
T 3rgz_A          615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI-------SG--------------SIP  673 (768)
T ss_dssp             TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC-------CS--------------CCC
T ss_pred             cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc-------CC--------------CCC
Confidence              011112223   235677888887775   3456677788888888888762       21              466


Q ss_pred             ccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecC
Q 007616          491 ESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLC  568 (596)
Q Consensus       491 ~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C  568 (596)
                      ..+  +++|+.| ++++|..    .+.+|.           .+..+++|++|++++|+--+.+|..+.+.++....+.|+
T Consensus       674 ~~l~~L~~L~~L-dLs~N~l----~g~ip~-----------~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN  737 (768)
T 3rgz_A          674 DEVGDLRGLNIL-DLSSNKL----DGRIPQ-----------AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN  737 (768)
T ss_dssp             GGGGGCTTCCEE-ECCSSCC----EECCCG-----------GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSC
T ss_pred             hHHhCCCCCCEE-ECCCCcc----cCcCCh-----------HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCC
Confidence            666  8999999 9999997    667776           688899999999999887788998777666666666676


Q ss_pred             chH----HHhhccCCCCCccccCCccce
Q 007616          569 PYL----EERCKKDKGEYWHLVADIPKF  592 (596)
Q Consensus       569 ~~L----~~~~~~~~~~~~~~i~~i~~~  592 (596)
                      |.|    -..|....+++|++|+|+|.+
T Consensus       738 ~~Lcg~~l~~C~~~~~~~~~~~~~~~~~  765 (768)
T 3rgz_A          738 PGLCGYPLPRCDPSNADGYAHHQRSHHH  765 (768)
T ss_dssp             TEEESTTSCCCCSCC-------------
T ss_pred             chhcCCCCcCCCCCccCCCCCCCCcccc
Confidence            644    126888999999999999875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=2.2e-29  Score=273.09  Aligned_cols=340  Identities=16%  Similarity=0.123  Sum_probs=180.9

Q ss_pred             ccccccccCCcCcEEEccccccccc------------------cCCccc--CCCccceeecCCCCccccccccccCCccc
Q 007616          181 VLSESVSTLYNLQTLILEYCYRLKK------------------LFPDIG--NLVNLRHLKDSHSNLLEEMPLRIGKLTSL  240 (596)
Q Consensus       181 ~lp~~i~~l~~L~~L~L~~~~~~~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~l~~l~~L  240 (596)
                      .+|+.++++++|++|++++| .+..                  +|+.++  ++++|++|++++|...+.+|..++++++|
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  275 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM  275 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred             cCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence            46666777777777777777 3444                  777766  77777777777776566677667777777


Q ss_pred             CCCCcEEec-cCCCCCchhccch------hhccceEEEcCcCCCCCHhhHHHH--hcCCccccccccccccCCcchhhhh
Q 007616          241 RTLAKFVVG-KGNCSGLKELRSL------MHLQEKLTISGLENVNDAEDAKEA--QLNGKKKLEALSPKWGNKIQTCVFE  311 (596)
Q Consensus       241 ~~L~~~~~~-~~~~~~l~~l~~L------~~L~~~l~i~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~  311 (596)
                      ++|++.++. .........+..+      ++|+ .+.+.+..-.     .++.  .+..+++|+.|+++.+.. ....+ 
T Consensus       276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l~-----~ip~~~~l~~l~~L~~L~L~~N~l-~g~ip-  347 (636)
T 4eco_A          276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLK-----TFPVETSLQKMKKLGMLECLYNQL-EGKLP-  347 (636)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCCS-----SCCCHHHHTTCTTCCEEECCSCCC-EEECC-
T ss_pred             CEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcCC-----ccCchhhhccCCCCCEEeCcCCcC-ccchh-
Confidence            777665544 2110112222222      4554 5555442211     1112  355566666666665542 21222 


Q ss_pred             ccCCCCCccEEEEeccCCCCCCCCCCCCCCCC-ccEEEEecCCCCCCCC-CCCC--CCccceeeccCccCceEeCccccC
Q 007616          312 MLKPHYGLKELKVRGYGGTKFPAWLGQSSFEN-LVVLRFKNCNQCTTLP-SVGH--LPSLKNLVIKGMAKVKSVGLEFCG  387 (596)
Q Consensus       312 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~l~-~l~~--l~~L~~L~L~~~~~l~~~~~~~~~  387 (596)
                      .+..+++|+.|++++|....+|.++.  .+++ |+.|++++|... .+| .++.  +++|+.|++++|.....++..+..
T Consensus       348 ~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          348 AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            44444555555555555555555444  4455 555555555533 444 2222  225555555555433322222210


Q ss_pred             C-CCCCCCCCcceeecccCc----------cccccceeEEecCCCCCCCCCC-C----------CCCCCEEEEeecc--C
Q 007616          388 N-YCSEPFPSLETLCFEDMQ----------EWEERIGLSIVRCPKLKGRLPQ-R----------FSSLERIVITSCE--Q  443 (596)
Q Consensus       388 ~-~~~~~~~~L~~L~l~~~~----------~l~~~~~l~l~~c~~L~~~~p~-~----------l~~L~~L~l~~c~--~  443 (596)
                      . .....+++|+.|+++++.          .++.+..|.+.+ ++++ .+|. .          +++|+.|++++|.  .
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~-N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  502 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTK  502 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS-SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCB
T ss_pred             cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC-CCCC-CcCHHHhccccccccccCCccEEECcCCcCCc
Confidence            0 000013455555554421          011111222222 2233 2332 1          1267777776664  3


Q ss_pred             hhccCC--CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccc-cc-cceecc
Q 007616          444 LLVSYT--ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMV-GS-LLVYIA  517 (596)
Q Consensus       444 l~~~~~--~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~-~~-~l~~~~  517 (596)
                      ++..+.  .+++|++|++++|...                      .+|..+  +++|+.| ++++|+.. ++ ..+.+|
T Consensus       503 lp~~~~~~~l~~L~~L~Ls~N~l~----------------------~ip~~~~~l~~L~~L-~Ls~N~~ls~N~l~~~~p  559 (636)
T 4eco_A          503 LSDDFRATTLPYLVGIDLSYNSFS----------------------KFPTQPLNSSTLKGF-GIRNQRDAQGNRTLREWP  559 (636)
T ss_dssp             CCGGGSTTTCTTCCEEECCSSCCS----------------------SCCCGGGGCSSCCEE-ECCSCBCTTCCBCCCCCC
T ss_pred             cChhhhhccCCCcCEEECCCCCCC----------------------CcChhhhcCCCCCEE-ECCCCcccccCcccccCh
Confidence            344444  6677777777776511                      234444  7888888 88654420 00 134444


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCch
Q 007616          518 EGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPY  570 (596)
Q Consensus       518 ~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~  570 (596)
                      .           .+..+++|++|++++|+ ++.+|.. +.++|++|++++|+-
T Consensus       560 ~-----------~l~~l~~L~~L~Ls~N~-l~~ip~~-~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          560 E-----------GITLCPSLTQLQIGSND-IRKVNEK-ITPNISVLDIKDNPN  599 (636)
T ss_dssp             T-----------TGGGCSSCCEEECCSSC-CCBCCSC-CCTTCCEEECCSCTT
T ss_pred             H-----------HHhcCCCCCEEECCCCc-CCccCHh-HhCcCCEEECcCCCC
Confidence            4           67789999999999965 5999875 458999999999953

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=2.5e-28  Score=269.23  Aligned_cols=345  Identities=15%  Similarity=0.138  Sum_probs=261.8

Q ss_pred             CcccccccCCCcEEeecCCCccc------------------cccccc--cCCcCcEEEccccccccccCCcccCCCccce
Q 007616          159 LPNDIAELKHLRYLDFSHTAIEV------------------LSESVS--TLYNLQTLILEYCYRLKKLFPDIGNLVNLRH  218 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~~------------------lp~~i~--~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~  218 (596)
                      +|..++++++|++|+|++|.++.                  +|+.++  ++++|++|++++|.....+|..++++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            89999999999999999999998                  999988  9999999999999778899999999999999


Q ss_pred             eecCCCC-ccc-cccccccCCc-------ccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          219 LKDSHSN-LLE-EMPLRIGKLT-------SLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       219 L~l~~~~-~l~-~lp~~l~~l~-------~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      |++++|. ..+ .+|.++++++       +|++|++.++..........+..++.|+ .+.+.+..-.     .++ .+.
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~-~L~Ls~N~l~-----~lp-~~~  592 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLG-LLDCVHNKVR-----HLE-AFG  592 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCC-EEECTTSCCC-----BCC-CCC
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCC-EEECCCCCcc-----cch-hhc
Confidence            9999997 444 5888777766       9999998777665222212466677776 7777654322     112 578


Q ss_pred             CccccccccccccCCcchhhhhccCCCCC-ccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCC------
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPHYG-LKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVG------  362 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~------  362 (596)
                      .+++|+.|+++.+...  ..+..+..+++ |+.|++++|....+|.++.....++|+.|++++|...+.+|.+.      
T Consensus       593 ~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~  670 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY  670 (876)
T ss_dssp             TTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred             CCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence            8999999999988643  55666777888 99999999998899988774344569999999998766655333      


Q ss_pred             CCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC-----------CCC
Q 007616          363 HLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ-----------RFS  431 (596)
Q Consensus       363 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~-----------~l~  431 (596)
                      .+++|+.|++++|. +..++.....     .+++|+.|+++++               ++. .+|.           .++
T Consensus       671 ~~~~L~~L~Ls~N~-L~~lp~~~~~-----~l~~L~~L~Ls~N---------------~L~-~ip~~~~~~~~~~l~nl~  728 (876)
T 4ecn_A          671 KGINASTVTLSYNE-IQKFPTELFA-----TGSPISTIILSNN---------------LMT-SIPENSLKPKDGNYKNTY  728 (876)
T ss_dssp             CCCCEEEEECCSSC-CCSCCHHHHH-----TTCCCSEEECCSC---------------CCS-CCCTTSSSCTTSCCTTGG
T ss_pred             cCCCcCEEEccCCc-CCccCHHHHc-----cCCCCCEEECCCC---------------cCC-ccChHHhccccccccccC
Confidence            45689999999875 4456554432     2789999999874               222 2332           234


Q ss_pred             CCCEEEEeecc--ChhccCC--CCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccc
Q 007616          432 SLERIVITSCE--QLLVSYT--ALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITR  505 (596)
Q Consensus       432 ~L~~L~l~~c~--~l~~~~~--~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~  505 (596)
                      +|+.|++++|.  .++..+.  .+++|+.|++++|...                      .+|..+  +++|+.| ++++
T Consensus       729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~----------------------~lp~~l~~L~~L~~L-~Ls~  785 (876)
T 4ecn_A          729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS----------------------SFPTQPLNSSQLKAF-GIRH  785 (876)
T ss_dssp             GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCS----------------------SCCCGGGGCTTCCEE-ECCC
T ss_pred             CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCC----------------------ccchhhhcCCCCCEE-ECCC
Confidence            89999999986  4556665  8999999999998622                      234444  8889999 9987


Q ss_pred             cccc-ccc-ceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCch
Q 007616          506 ISMV-GSL-LVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCPY  570 (596)
Q Consensus       506 c~~~-~~~-l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~  570 (596)
                      |+.. ++. .+.+|.           .+..+++|+.|++++|+ ++.+|.. +.++|+.|++++|+-
T Consensus       786 N~~ls~N~l~~~ip~-----------~l~~L~~L~~L~Ls~N~-L~~Ip~~-l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          786 QRDAEGNRILRQWPT-----------GITTCPSLIQLQIGSND-IRKVDEK-LTPQLYILDIADNPN  839 (876)
T ss_dssp             CBCTTCCBCCCCCCT-----------TGGGCSSCCEEECCSSC-CCBCCSC-CCSSSCEEECCSCTT
T ss_pred             CCCcccccccccChH-----------HHhcCCCCCEEECCCCC-CCccCHh-hcCCCCEEECCCCCC
Confidence            5420 000 344444           67889999999999965 5999976 457999999999964

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5e-28  Score=268.49  Aligned_cols=425  Identities=14%  Similarity=0.106  Sum_probs=228.2

Q ss_pred             HHHHhhccceEEeccccCCCCccccCCceeEEEEeccccccc--------ccc----------cccccCcccccccCCCc
Q 007616          109 LACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGI--------KRF----------EGLHELPNDIAELKHLR  170 (596)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~----------~~l~~lp~~~~~l~~L~  170 (596)
                      ++.|.....|+    .|.|+.+.  .++++.+++......+.        .++          .++..+|+.++.+++|+
T Consensus        30 l~~W~~~~~~C----~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~  103 (768)
T 3rgz_A           30 LPDWSSNKNPC----TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLT  103 (768)
T ss_dssp             STTCCTTSCGG----GSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCC
T ss_pred             ccCCCCCCCCc----CCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCC
Confidence            34565443333    47777776  56777777765543321        111          11224557788888888


Q ss_pred             EEeecCCCcc-cccc--ccccCCcCcEEEccccccccccCCcc-cCCCccceeecCCCCcccccccc---ccCCcccCCC
Q 007616          171 YLDFSHTAIE-VLSE--SVSTLYNLQTLILEYCYRLKKLFPDI-GNLVNLRHLKDSHSNLLEEMPLR---IGKLTSLRTL  243 (596)
Q Consensus       171 ~L~L~~~~i~-~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~---l~~l~~L~~L  243 (596)
                      +|+|++|.+. .+|.  .++.+++|++|++++|.....+|..+ +++++|++|++++|...+..|..   ++++++|++|
T Consensus       104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L  183 (768)
T 3rgz_A          104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL  183 (768)
T ss_dssp             EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred             EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE
Confidence            8888888887 5666  78888888888888885555666554 77888888888888733334443   5666777776


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC-------
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH-------  316 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-------  316 (596)
                      ++.++........   ..+..|+ .+.+.+......    .+. +..+++|+.|+++++. .....+..+..+       
T Consensus       184 ~Ls~n~l~~~~~~---~~l~~L~-~L~Ls~n~l~~~----~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~  253 (768)
T 3rgz_A          184 AISGNKISGDVDV---SRCVNLE-FLDVSSNNFSTG----IPF-LGDCSALQHLDISGNK-LSGDFSRAISTCTELKLLN  253 (768)
T ss_dssp             ECCSSEEESCCBC---TTCTTCC-EEECCSSCCCSC----CCB-CTTCCSCCEEECCSSC-CCSCHHHHTTTCSSCCEEE
T ss_pred             ECCCCcccccCCc---ccCCcCC-EEECcCCcCCCC----Ccc-cccCCCCCEEECcCCc-CCCcccHHHhcCCCCCEEE
Confidence            6654443322212   2233333 333333221110    011 3444444444444443 122233333444       


Q ss_pred             ---------------CCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCce
Q 007616          317 ---------------YGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVK  379 (596)
Q Consensus       317 ---------------~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~  379 (596)
                                     ++|+.|++++|... .+|.++.. .+++|++|++++|...+.+| .++.+++|+.|++++|...+
T Consensus       254 Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  332 (768)
T 3rgz_A          254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG  332 (768)
T ss_dssp             CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence                           44555555554433 44444431 23566666666665444444 45566666666666665444


Q ss_pred             EeCccccCCCCCCCCCCcceeecccCccc----------c-ccceeEEecCCCCCCCCCC-----CCCCCCEEEEeecc-
Q 007616          380 SVGLEFCGNYCSEPFPSLETLCFEDMQEW----------E-ERIGLSIVRCPKLKGRLPQ-----RFSSLERIVITSCE-  442 (596)
Q Consensus       380 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----------~-~~~~l~l~~c~~L~~~~p~-----~l~~L~~L~l~~c~-  442 (596)
                      .++....+     .+++|++|+++++.--          . .+..+.+.++ ++.+.+|.     .+++|++|++++|. 
T Consensus       333 ~ip~~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l  406 (768)
T 3rgz_A          333 ELPMDTLL-----KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGF  406 (768)
T ss_dssp             ECCHHHHT-----TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred             cCCHHHHh-----cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCcc
Confidence            55443111     1666777766654211          0 2224444432 22223332     14567777776665 


Q ss_pred             --ChhccCCCCCCcceEEecCCccc------------ceeeEecccccccccCCccccccccccc--chhhhcccccccc
Q 007616          443 --QLLVSYTALPPLCELEIDGFSEL------------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRI  506 (596)
Q Consensus       443 --~l~~~~~~l~~L~~L~l~~c~~l------------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c  506 (596)
                        .++..+..+++|++|++++|...            ++.+.+.++.-. +        .+|..+  +++|+.| ++++|
T Consensus       407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~-~--------~~p~~~~~l~~L~~L-~L~~N  476 (768)
T 3rgz_A          407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE-G--------EIPQELMYVKTLETL-ILDFN  476 (768)
T ss_dssp             EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-S--------CCCGGGGGCTTCCEE-ECCSS
T ss_pred             ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-C--------cCCHHHcCCCCceEE-EecCC
Confidence              23455666777777777776522            222333332211 0        123333  5555555 55555


Q ss_pred             ccccccceecccC-CCCCCCCCC-----------C-CCCCCCCCCeeecCCCCCCccCCCC-CCCCCccEEEEecCch
Q 007616          507 SMVGSLLVYIAEG-GEFPQLESL-----------S-FVGNLTSLERLELPRCPVLRSFPEN-VLPPSLVYLSIYLCPY  570 (596)
Q Consensus       507 ~~~~~~l~~~~~~-~~~~~L~~l-----------~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~C~~  570 (596)
                      ..    .+.+|.. +.+++|+.+           | ++..+++|++|++++|+....+|.. ..+++|++|++++|+-
T Consensus       477 ~l----~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          477 DL----TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CC----CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cc----cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            54    2233322 222333222           1 5677889999999997665577753 2378899999998853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=9.3e-27  Score=252.38  Aligned_cols=110  Identities=14%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             ccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcc
Q 007616          132 RFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDI  210 (596)
Q Consensus       132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i  210 (596)
                      .++..++.+.+..+.+..        ..|..|+++++|++|++++|.+..+ |..|+++++|++|++++|......|..+
T Consensus        30 ~l~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           30 TLPNSTECLEFSFNVLPT--------IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             TSCTTCCEEECTTCCCSE--------ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             CCCCcCcEEEccCCccCc--------CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            345677888877776554        2355667777777777777777654 5566777777777777773333335566


Q ss_pred             cCCCccceeecCCCCccccc-cccccCCcccCCCCcEEecc
Q 007616          211 GNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~~~~~~~  250 (596)
                      +++++|++|++++|. +..+ |..++++++|++|++.++..
T Consensus       102 ~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A          102 SGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             SSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             cccccccEeeccccC-cccCCcchhccCCcccEEECCCCcc
Confidence            777777777777776 5554 34466667777766655444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=2.2e-26  Score=249.50  Aligned_cols=377  Identities=17%  Similarity=0.176  Sum_probs=210.9

Q ss_pred             cccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccc--ccccccc
Q 007616          160 PNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLE--EMPLRIG  235 (596)
Q Consensus       160 p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~l~  235 (596)
                      |..|+++++|++|++++|.++.+ |..|+++++|++|++++| .+..+| ..++++++|++|++++|. +.  .+|..++
T Consensus        73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~  150 (606)
T 3vq2_A           73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFS  150 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGG
T ss_pred             HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCc-ccceechHhHh
Confidence            45677788888888888887766 667788888888888887 555555 567788888888888887 44  4677788


Q ss_pred             CCcccCCCCcEEeccCC--CCCchhccchhhccceEEEcCcC--------------------CCCCHhhHHHHhcCCccc
Q 007616          236 KLTSLRTLAKFVVGKGN--CSGLKELRSLMHLQEKLTISGLE--------------------NVNDAEDAKEAQLNGKKK  293 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~--~~~l~~l~~L~~L~~~l~i~~~~--------------------~~~~~~~~~~~~l~~~~~  293 (596)
                      ++++|++|++.++....  ...+..+.+++.....+.+....                    .........+..+..+++
T Consensus       151 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence            88888888776554432  11222222222100022222110                    000011223333344444


Q ss_pred             cccccccc--------------------------------cCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCC
Q 007616          294 LEALSPKW--------------------------------GNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSF  341 (596)
Q Consensus       294 L~~L~l~~--------------------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  341 (596)
                      ++.+.+..                                ........+. +..+++|+.|+++++....+| ++.  .+
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~--~~  306 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVP--KH  306 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCC--TT
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hcc--cc
Confidence            44333321                                1111112222 556788888888888877777 444  67


Q ss_pred             CCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc------------ccc
Q 007616          342 ENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ------------EWE  409 (596)
Q Consensus       342 ~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------~l~  409 (596)
                      ++|+.|++++|.. +.+|.+ .+++|+.|++++|..+..+.  +      ..+++|+.|+++++.            .+.
T Consensus       307 ~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~--~------~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~  376 (606)
T 3vq2_A          307 FKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFK--K------VALPSLSYLDLSRNALSFSGCCSYSDLGTN  376 (606)
T ss_dssp             CCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECC--C------CCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred             ccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchh--h------ccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence            7888888888876 777766 78888888888875555442  1      126667777666532            112


Q ss_pred             ccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC--h-h-ccCCCCCCcceEEecCCccc------------ceeeE
Q 007616          410 ERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ--L-L-VSYTALPPLCELEIDGFSEL------------FLILQ  470 (596)
Q Consensus       410 ~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~--l-~-~~~~~l~~L~~L~l~~c~~l------------l~~l~  470 (596)
                      .+..+.+.++. +. .+|   ..+++|+.|++++|.-  . + ..+..+++|++|++++|...            ++.+.
T Consensus       377 ~L~~L~L~~n~-l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          377 SLRHLDLSFNG-AI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             CCCEEECCSCS-EE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             cccEeECCCCc-cc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            22244444432 22 122   2456666776666542  1 1 34556666666666666522            22222


Q ss_pred             ecccccccccCCccccccccccc--chhhhccccccccccccccceecccC--CCCCCCCCCC------------CCCCC
Q 007616          471 IQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEG--GEFPQLESLS------------FVGNL  534 (596)
Q Consensus       471 ~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~--~~~~~L~~l~------------~~~~l  534 (596)
                      ++++.-...        .+|..+  +++|+.| ++++|..     +.++..  +.+++|+.+.            .+..+
T Consensus       455 l~~n~l~~~--------~~~~~~~~l~~L~~L-~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  520 (606)
T 3vq2_A          455 MAGNSFKDN--------TLSNVFANTTNLTFL-DLSKCQL-----EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL  520 (606)
T ss_dssp             CTTCEEGGG--------EECSCCTTCTTCCEE-ECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred             CCCCcCCCc--------chHHhhccCCCCCEE-ECCCCcC-----CccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence            222211000        012222  4555555 5555542     222211  1223333221            57788


Q ss_pred             CCCCeeecCCCCCCccCCCCC--CCCCccEEEEecCc
Q 007616          535 TSLERLELPRCPVLRSFPENV--LPPSLVYLSIYLCP  569 (596)
Q Consensus       535 ~~L~~L~l~~c~~l~~lp~~~--~~~~L~~L~i~~C~  569 (596)
                      ++|++|++++| +++.+|...  ++++|++|+++++|
T Consensus       521 ~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          521 YSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             CcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence            99999999996 488888752  23479999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=5.2e-26  Score=246.54  Aligned_cols=399  Identities=16%  Similarity=0.116  Sum_probs=259.2

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i  210 (596)
                      .+.+++.+.+..+....        ..|..|.++++|++|++++|.++.+ |..|+++++|++|++++| .+..+ |..+
T Consensus        30 ~~~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~  100 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKI--------LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF  100 (606)
T ss_dssp             SCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred             CCCCcCEEECCCCCcCE--------eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence            45678888887776654        2345789999999999999999977 567899999999999999 56655 7889


Q ss_pred             cCCCccceeecCCCCcccccc-ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCC----HhhHH-
Q 007616          211 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVND----AEDAK-  284 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~----~~~~~-  284 (596)
                      +++++|++|++++|. +..+| ..++++++|++|++.++..........+.++++|+ .+.+.+..-...    ..... 
T Consensus       101 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~  178 (606)
T 3vq2_A          101 SGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV-HVDLSYNYIQTITVNDLQFLRE  178 (606)
T ss_dssp             TTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC-EEECCSSCCCEECTTTTHHHHH
T ss_pred             CCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC-EEEccCCcceecChhhhhhhhc
Confidence            999999999999999 77766 56999999999999887765433344566666776 666655321110    00000 


Q ss_pred             ------------------HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccC------------------
Q 007616          285 ------------------EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG------------------  328 (596)
Q Consensus       285 ------------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------------------  328 (596)
                                        ........+|+.|+++++.......+..+..+++++.+++....                  
T Consensus       179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                              00011123677777777654444555566667777776664322                  


Q ss_pred             ---------------CCC-CCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616          329 ---------------GTK-FPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE  392 (596)
Q Consensus       329 ---------------~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  392 (596)
                                     ... .|. +.  .+++|+.|+++++.. +.+|.++.+++|+.|++++|.. +.++ .+ .     
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~-----  326 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-D-----  326 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-CC-C-----
T ss_pred             hhccHhheeccccccccccccc-cc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-cC-C-----
Confidence                           111 122 22  678999999999884 6677889999999999999875 6665 22 3     


Q ss_pred             CCCCcceeecccCcccc--------ccceeEEecCCCCCCC--CC---CCCCCCCEEEEeecc--ChhccCCCCCCcceE
Q 007616          393 PFPSLETLCFEDMQEWE--------ERIGLSIVRCPKLKGR--LP---QRFSSLERIVITSCE--QLLVSYTALPPLCEL  457 (596)
Q Consensus       393 ~~~~L~~L~l~~~~~l~--------~~~~l~l~~c~~L~~~--~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L  457 (596)
                       +++|+.|+++++....        .+..+.+.++ ++.+.  +|   ..+++|+.|++++|.  .++..+..+++|++|
T Consensus       327 -l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  404 (606)
T 3vq2_A          327 -LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL  404 (606)
T ss_dssp             -CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE
T ss_pred             -CCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee
Confidence             8999999998864332        2224444443 22211  12   256777777777765  234556677778888


Q ss_pred             EecCCcccceeeEecccc--cccccCCccccc---------cccccc--chhhhcccccccccccccccee-cccC-CCC
Q 007616          458 EIDGFSELFLILQIQGWR--SRAEILPQEIRI---------PNQESL--LDGLQKLSHITRISMVGSLLVY-IAEG-GEF  522 (596)
Q Consensus       458 ~l~~c~~ll~~l~~~~~~--~l~~~~p~l~~l---------~~p~~~--l~~L~~L~~l~~c~~~~~~l~~-~~~~-~~~  522 (596)
                      ++++|...       +..  .....+++|+.+         ..|..+  +++|+.| ++++|..    .+. +|.. +.+
T Consensus       405 ~l~~n~l~-------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l----~~~~~~~~~~~l  472 (606)
T 3vq2_A          405 DFQHSTLK-------RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL-KMAGNSF----KDNTLSNVFANT  472 (606)
T ss_dssp             ECTTSEEE-------STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEE----GGGEECSCCTTC
T ss_pred             ECCCCccC-------CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE-ECCCCcC----CCcchHHhhccC
Confidence            88777522       100  001123333333         133333  8899999 9999985    332 3432 234


Q ss_pred             CCCCCCC------------CCCCCCCCCeeecCCCCCCccC-CCC-CCCCCccEEEEecCc
Q 007616          523 PQLESLS------------FVGNLTSLERLELPRCPVLRSF-PEN-VLPPSLVYLSIYLCP  569 (596)
Q Consensus       523 ~~L~~l~------------~~~~l~~L~~L~l~~c~~l~~l-p~~-~~~~~L~~L~i~~C~  569 (596)
                      ++|+.+.            .+..+++|++|++++|+ +..+ |.. ..+++|++|++++|.
T Consensus       473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc
Confidence            4444432            45667778888887753 4444 322 225678888887774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=3.8e-27  Score=259.77  Aligned_cols=361  Identities=14%  Similarity=0.156  Sum_probs=197.2

Q ss_pred             CCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEee-cCCCc-------------------------
Q 007616          126 DGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDF-SHTAI-------------------------  179 (596)
Q Consensus       126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L-~~~~i-------------------------  179 (596)
                      .|+.+.. ..++..|.+.++...+        .+|++++++++|++|+| ++|.+                         
T Consensus       315 ~GV~C~~-~~~V~~L~Ls~~~L~G--------~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~  385 (876)
T 4ecn_A          315 PGVDLDN-NGRVTGLSLAGFGAKG--------RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM  385 (876)
T ss_dssp             TTEEECT-TSCEEEEECTTTCCEE--------EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHT
T ss_pred             CceEecC-CCCEEEEECccCCCCC--------cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHH
Confidence            4444433 4677888887776665        78999999999999999 66532                         


Q ss_pred             ----------------------------------------------------cccccccccCCcCcEEEccccccccc--
Q 007616          180 ----------------------------------------------------EVLSESVSTLYNLQTLILEYCYRLKK--  205 (596)
Q Consensus       180 ----------------------------------------------------~~lp~~i~~l~~L~~L~L~~~~~~~~--  205 (596)
                                                                          +.+|..++++++|++|+|++| .+..  
T Consensus       386 ~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~  464 (876)
T 4ecn_A          386 HYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDN  464 (876)
T ss_dssp             HHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGG
T ss_pred             hhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCc
Confidence                                                                226777778888888888887 4554  


Q ss_pred             ----------------cCCccc--CCCccceeecCCCCccccccccccCCcccCCCCcEEec-cCCCCCchhccchhhcc
Q 007616          206 ----------------LFPDIG--NLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG-KGNCSGLKELRSLMHLQ  266 (596)
Q Consensus       206 ----------------lp~~i~--~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~-~~~~~~l~~l~~L~~L~  266 (596)
                                      +|+.++  ++++|++|++++|...+.+|..++++++|++|++.++. .........+..+.   
T Consensus       465 i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---  541 (876)
T 4ecn_A          465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA---  541 (876)
T ss_dssp             BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---
T ss_pred             ccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh---
Confidence                            777777  88888888888877677777778888888877765443 21101111122222   


Q ss_pred             ceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh--ccCCCCCccEEEEeccCCCCCCCCCCCCCCCCc
Q 007616          267 EKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE--MLKPHYGLKELKVRGYGGTKFPAWLGQSSFENL  344 (596)
Q Consensus       267 ~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  344 (596)
                                         ..+..+++|+.|+++.+...  .++.  .+..+++|+.|++++|....+| .+.  .+++|
T Consensus       542 -------------------~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L  597 (876)
T 4ecn_A          542 -------------------DDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKL  597 (876)
T ss_dssp             -------------------HCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC--TTSEE
T ss_pred             -------------------hcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhc--CCCcc
Confidence                               01223334555555444322  2222  3444455555555555444444 222  44455


Q ss_pred             cEEEEecCCCCCCCC-CCCCCCc-cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcccc-------------
Q 007616          345 VVLRFKNCNQCTTLP-SVGHLPS-LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWE-------------  409 (596)
Q Consensus       345 ~~L~l~~~~~~~~l~-~l~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-------------  409 (596)
                      +.|++++|... .+| .++.+++ |+.|++++|. +..++..+..    ...++|+.|+++++.--.             
T Consensus       598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~----~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~  671 (876)
T 4ecn_A          598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA----KSVYVMGSVDFSYNKIGSEGRNISCSMDDYK  671 (876)
T ss_dssp             SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT----TCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred             eEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhc----cccCCCCEEECcCCcCCCccccchhhhcccc
Confidence            55555554433 333 3444444 5555555443 2233322111    011224444444421000             


Q ss_pred             --ccceeEEecCCCCCCCCCC----CCCCCCEEEEeecc--ChhccCC--------CCCCcceEEecCCcccceeeEecc
Q 007616          410 --ERIGLSIVRCPKLKGRLPQ----RFSSLERIVITSCE--QLLVSYT--------ALPPLCELEIDGFSELFLILQIQG  473 (596)
Q Consensus       410 --~~~~l~l~~c~~L~~~~p~----~l~~L~~L~l~~c~--~l~~~~~--------~l~~L~~L~l~~c~~ll~~l~~~~  473 (596)
                        .+..|.+.+ +++. .+|.    .+++|+.|++++|.  .++..+.        ++++|++|++++|...        
T Consensus       672 ~~~L~~L~Ls~-N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--------  741 (876)
T 4ecn_A          672 GINASTVTLSY-NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--------  741 (876)
T ss_dssp             CCCEEEEECCS-SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--------
T ss_pred             CCCcCEEEccC-CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--------
Confidence              011111111 2233 3442    45666666666654  1222111        1226666666666411        


Q ss_pred             cccccccCCccccccccccc----chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCC-----
Q 007616          474 WRSRAEILPQEIRIPNQESL----LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPR-----  544 (596)
Q Consensus       474 ~~~l~~~~p~l~~l~~p~~~----l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~-----  544 (596)
                                    .+|..+    +++|+.| ++++|.     ++.+|.           .+..+++|+.|++++     
T Consensus       742 --------------~lp~~l~~~~l~~L~~L-~Ls~N~-----L~~lp~-----------~l~~L~~L~~L~Ls~N~~ls  790 (876)
T 4ecn_A          742 --------------SLSDDFRATTLPYLSNM-DVSYNC-----FSSFPT-----------QPLNSSQLKAFGIRHQRDAE  790 (876)
T ss_dssp             --------------CCCGGGSTTTCTTCCEE-ECCSSC-----CSSCCC-----------GGGGCTTCCEEECCCCBCTT
T ss_pred             --------------cchHHhhhccCCCcCEE-EeCCCC-----CCccch-----------hhhcCCCCCEEECCCCCCcc
Confidence                          122222    5777888 888776     333554           567889999999977     


Q ss_pred             -CCCCccCCCC-CCCCCccEEEEecCch
Q 007616          545 -CPVLRSFPEN-VLPPSLVYLSIYLCPY  570 (596)
Q Consensus       545 -c~~l~~lp~~-~~~~~L~~L~i~~C~~  570 (596)
                       |.....+|.. ..+++|+.|++++|.-
T Consensus       791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          791 GNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             cccccccChHHHhcCCCCCEEECCCCCC
Confidence             3334556643 2278999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=3.6e-25  Score=248.10  Aligned_cols=142  Identities=16%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             ccCCCCCccEEEEeccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCC
Q 007616          312 MLKPHYGLKELKVRGYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNY  389 (596)
Q Consensus       312 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~  389 (596)
                      .+..+++|+.|++++|....++ ..+.  .+++|++|++++|...+..+ .++.+++|+.|++++|. +..++....   
T Consensus       285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~---  358 (844)
T 3j0a_A          285 VFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF---  358 (844)
T ss_dssp             CSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCS---
T ss_pred             hhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhh---
Confidence            3444556666666666554442 2333  45666666666665433323 45566666666666653 333332211   


Q ss_pred             CCCCCCCcceeecccCc-----cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccCh----hccCCCCCCcceEEec
Q 007616          390 CSEPFPSLETLCFEDMQ-----EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQL----LVSYTALPPLCELEID  460 (596)
Q Consensus       390 ~~~~~~~L~~L~l~~~~-----~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l----~~~~~~l~~L~~L~l~  460 (596)
                        ..+++|+.|++++..     .+..+..+.+.++ ++. .+|....+++.|+++++.--    ...+..+++|++|+++
T Consensus       359 --~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N-~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls  434 (844)
T 3j0a_A          359 --KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN-KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN  434 (844)
T ss_dssp             --CSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC-CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEE
T ss_pred             --cCCCCCCEEECCCCCCCcccCCCCcchhccCCC-Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCC
Confidence              226667777666521     1222334444442 333 34444444555555444311    1123356666666666


Q ss_pred             CCc
Q 007616          461 GFS  463 (596)
Q Consensus       461 ~c~  463 (596)
                      +|.
T Consensus       435 ~N~  437 (844)
T 3j0a_A          435 QNR  437 (844)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=242.06  Aligned_cols=388  Identities=18%  Similarity=0.201  Sum_probs=195.9

Q ss_pred             cCCceeEEEEecccccccc-----cccccc----------cC-cccccccCCCcEEeecCCCccccc-cccccCCcCcEE
Q 007616          133 FSRNLRHLSYLTSRFDGIK-----RFEGLH----------EL-PNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTL  195 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~-----~~~~l~----------~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L  195 (596)
                      .+..++.+.+..+....+.     .++.++          .+ |..|+++++|++|++++|.++.+| ..++.+++|++|
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            4556777777666544321     111111          22 334566666666666666666554 456666666666


Q ss_pred             EccccccccccCC-cccCCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCCCCCchhccchhhcc---ceE
Q 007616          196 ILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQ---EKL  269 (596)
Q Consensus       196 ~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~---~~l  269 (596)
                      ++++| .+..+|. .++++++|++|++++|. +..  +|..++++++|++|++.++..... ....+..+.++.   ..+
T Consensus       106 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          106 VAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             ECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEE-CGGGGHHHHTCTTCCCEE
T ss_pred             ccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCcccee-cHHHccchhccchhhhhc
Confidence            66666 5555554 46666777777777666 433  566666677777766544433221 112233333330   123


Q ss_pred             EEcCcCCCCCHhhHHHHhcCCccccccccccccC----------------------------------------------
Q 007616          270 TISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN----------------------------------------------  303 (596)
Q Consensus       270 ~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------------------------------------------  303 (596)
                      .+.+....    ......+.. .+|+.|+++.+.                                              
T Consensus       183 ~l~~n~l~----~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l  257 (570)
T 2z63_A          183 DLSLNPMN----FIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  257 (570)
T ss_dssp             ECTTCCCC----EECTTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred             ccCCCCce----ecCHHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence            33221100    000000111 122333222210                                              


Q ss_pred             -----------CcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeec
Q 007616          304 -----------KIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVI  372 (596)
Q Consensus       304 -----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L  372 (596)
                                 ......+..+..+++|+.|+++++....+|.++.  .+ +|+.|++++|... .+|. +.+++|+.|++
T Consensus       258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l  332 (570)
T 2z63_A          258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTF  332 (570)
T ss_dssp             EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEE
T ss_pred             chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCccc-ccCc-ccccccCEEeC
Confidence                       1111223344556788888888887777777766  45 7778888777633 4543 45666666666


Q ss_pred             cCccCceEeCccccCCCCCCCCCCcceeecccCcc------------ccccceeEEecCCCCCCCCC---CCCCCCCEEE
Q 007616          373 KGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE------------WEERIGLSIVRCPKLKGRLP---QRFSSLERIV  437 (596)
Q Consensus       373 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~  437 (596)
                      .+|......+.        ..+++|+.|+++++.-            +..+..+.+.++. +. .+|   ..+++|+.|+
T Consensus       333 ~~n~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~-~~~~~~~~l~~L~~L~  402 (570)
T 2z63_A          333 TSNKGGNAFSE--------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VI-TMSSNFLGLEQLEHLD  402 (570)
T ss_dssp             ESCBSCCBCCC--------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EE-EEEEEEETCTTCCEEE
T ss_pred             cCCcccccccc--------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cc-cccccccccCCCCEEE
Confidence            66543322221        1255566665554320            1111122222211 11 011   1344555555


Q ss_pred             EeeccCh----hccCCCCCCcceEEecCCccc------------ceeeEecccccccccCCccccccccccc--chhhhc
Q 007616          438 ITSCEQL----LVSYTALPPLCELEIDGFSEL------------FLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQK  499 (596)
Q Consensus       438 l~~c~~l----~~~~~~l~~L~~L~l~~c~~l------------l~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~  499 (596)
                      +++|.-.    ...+..+++|++|++++|...            ++.+.+.+|.-..+        .+|..+  +++|+.
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~p~~~~~l~~L~~  474 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------FLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--------EECSCCTTCTTCCE
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc--------cchhhhhcccCCCE
Confidence            5544311    123444555555555555311            11111111110000        133333  677778


Q ss_pred             cccccccccccccceec-ccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616          500 LSHITRISMVGSLLVYI-AEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP  569 (596)
Q Consensus       500 L~~l~~c~~~~~~l~~~-~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~  569 (596)
                      | ++++|..     +.+ |.           .+..+++|++|++++| +++.++...+  +++|++|++++++
T Consensus       475 L-~l~~n~l-----~~~~~~-----------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          475 L-DLSQCQL-----EQLSPT-----------AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             E-ECTTSCC-----CEECTT-----------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             E-ECCCCcc-----ccCChh-----------hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            8 8887763     333 33           5778999999999996 5777776543  7899999999854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=236.29  Aligned_cols=372  Identities=18%  Similarity=0.169  Sum_probs=223.0

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCccc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIG  211 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~  211 (596)
                      .+.+++.+.+..+.+..        ..|..|..+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|..  
T Consensus        19 ~~~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--   87 (520)
T 2z7x_B           19 LSQKTTILNISQNYISE--------LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--   87 (520)
T ss_dssp             CCTTCSEEECCSSCCCC--------CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred             ccccccEEECCCCcccc--------cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence            34678888888776653        2346789999999999999999977 678999999999999999 78889887  


Q ss_pred             CCCccceeecCCCCcccc--ccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCC--CC-------C-
Q 007616          212 NLVNLRHLKDSHSNLLEE--MPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLEN--VN-------D-  279 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~--~~-------~-  279 (596)
                      .+++|++|++++|. +..  +|..++++++|++|++.++.... ..+..+.++ .++ .+.+.+...  ..       . 
T Consensus        88 ~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L-~L~-~L~l~~n~l~~~~~~~~~l~~l  163 (520)
T 2z7x_B           88 PTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHL-NIS-KVLLVLGETYGEKEDPEGLQDF  163 (520)
T ss_dssp             CCCCCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESSCCG-GGGGGGTTS-CEE-EEEEEECTTTTSSCCTTTTTTC
T ss_pred             ccCCccEEeccCCc-cccccchhhhccCCcceEEEecCcccch-hhccccccc-eee-EEEeeccccccccccccccccc
Confidence            89999999999998 554  67889999999999998876643 223333333 113 444433211  00       0 


Q ss_pred             ---------------------------------------------HhhHHHHhcCCccccccccccccCCcchhhhhcc-
Q 007616          280 ---------------------------------------------AEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML-  313 (596)
Q Consensus       280 ---------------------------------------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-  313 (596)
                                                                   ..+.. ..+..+++|+.|+++.+.... ..+..+ 
T Consensus       164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~-~~~~~~~  241 (520)
T 2z7x_B          164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTW-NSFIRIL  241 (520)
T ss_dssp             CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEH-HHHHHHH
T ss_pred             ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCH-HHHHHHH
Confidence                                                         11111 123334444444443322111 100000 


Q ss_pred             --CCCCCccEEEEeccCCC-CCCCCCCC---CCCCCccEEEEecCCCCCCCC--CCCCC---CccceeeccCccCceEeC
Q 007616          314 --KPHYGLKELKVRGYGGT-KFPAWLGQ---SSFENLVVLRFKNCNQCTTLP--SVGHL---PSLKNLVIKGMAKVKSVG  382 (596)
Q Consensus       314 --~~~~~L~~L~l~~~~~~-~~~~~~~~---~~~~~L~~L~l~~~~~~~~l~--~l~~l---~~L~~L~L~~~~~l~~~~  382 (596)
                        ...++|+.|++++|... .+|.++..   ..+++|+.+++++|..  .+|  .++.+   ++|+.|++++|.... ++
T Consensus       242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~  318 (520)
T 2z7x_B          242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML  318 (520)
T ss_dssp             HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC
T ss_pred             HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc
Confidence              01247788888877654 66766510   1677777788877764  444  12222   456777776654221 11


Q ss_pred             ccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccCh-----hccCCCCCCc
Q 007616          383 LEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQL-----LVSYTALPPL  454 (596)
Q Consensus       383 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~l-----~~~~~~l~~L  454 (596)
                        +     ...+++|+.|+++++               ++.+.+|   ..+++|+.|++++|.--     +..+..+++|
T Consensus       319 --~-----~~~l~~L~~L~Ls~n---------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L  376 (520)
T 2z7x_B          319 --C-----PSKISPFLHLDFSNN---------------LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL  376 (520)
T ss_dssp             --C-----CSSCCCCCEEECCSS---------------CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC
T ss_pred             --c-----hhhCCcccEEEeECC---------------ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC
Confidence              0     022677777777763               2332233   24566777777666521     2345667777


Q ss_pred             ceEEecCCcccceeeEecccccccccCCccccc---------ccccccchhhhccccccccccccccceecccCCCCCCC
Q 007616          455 CELEIDGFSELFLILQIQGWRSRAEILPQEIRI---------PNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQL  525 (596)
Q Consensus       455 ~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l---------~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L  525 (596)
                      ++|++++|..... +....    ...+++++.+         .+|..+.++|+.| ++++|.     ++.+|.       
T Consensus       377 ~~L~Ls~N~l~~~-l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L-~Ls~N~-----l~~ip~-------  438 (520)
T 2z7x_B          377 QQLDISQNSVSYD-EKKGD----CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL-DLHSNK-----IKSIPK-------  438 (520)
T ss_dssp             CEEECCSSCCBCC-GGGCS----CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE-ECCSSC-----CCCCCG-------
T ss_pred             CEEECCCCcCCcc-cccch----hccCccCCEEECcCCCCCcchhhhhcccCCEE-ECCCCc-----ccccch-------
Confidence            7777776652200 00000    0011222221         1122223567777 777775     445554       


Q ss_pred             CCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616          526 ESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP  569 (596)
Q Consensus       526 ~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~  569 (596)
                          .+..+++|++|++++| +++.+|...+  +++|++|++++++
T Consensus       439 ----~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          439 ----QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             ----GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ----hhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence                4668999999999996 6889998633  7899999999875

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=4.7e-25  Score=230.65  Aligned_cols=339  Identities=17%  Similarity=0.195  Sum_probs=245.6

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+...         .+| .+..+++|++|++++|.++.+|+ ++.+++|++|++++| .+..+|. +++++
T Consensus        46 ~~l~~L~l~~~~i~---------~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~  112 (466)
T 1o6v_A           46 DQVTTLQADRLGIK---------SID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLT  112 (466)
T ss_dssp             HTCCEEECCSSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred             ccccEEecCCCCCc---------cCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCC
Confidence            45677777655443         455 37889999999999999999887 999999999999999 7777776 99999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..+|. ++++++|++|++.++......   .+..+..|+ .+.+.+  .....     ..+..+++|
T Consensus       113 ~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~-~L~l~~--~~~~~-----~~~~~l~~L  179 (466)
T 1o6v_A          113 NLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS---ALSGLTSLQ-QLSFGN--QVTDL-----KPLANLTTL  179 (466)
T ss_dssp             TCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG---GGTTCTTCS-EEEEEE--SCCCC-----GGGTTCTTC
T ss_pred             CCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCccCCCh---hhccCCccc-EeecCC--cccCc-----hhhccCCCC
Confidence            99999999998 888876 899999999999988766543   344555555 555542  11111     127788999


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG  374 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~  374 (596)
                      +.|+++.+.....   ..+..+++|+.|++++|.....+. +.  .+++|+.|++++|. ++.++.++.+++|+.|++++
T Consensus       180 ~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          180 ERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred             CEEECcCCcCCCC---hhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCC-cccchhhhcCCCCCEEECCC
Confidence            9999988764332   346678899999999998777655 33  68899999999987 45567788899999999998


Q ss_pred             ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCC-CCCCCCCCEEEEeeccCh-hccCCCCC
Q 007616          375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRL-PQRFSSLERIVITSCEQL-LVSYTALP  452 (596)
Q Consensus       375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~-p~~l~~L~~L~l~~c~~l-~~~~~~l~  452 (596)
                      |... .++. +      ..+++|+.|+++++.               +.+.. ...+++|+.|++++|.-- ...+..++
T Consensus       253 n~l~-~~~~-~------~~l~~L~~L~l~~n~---------------l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~  309 (466)
T 1o6v_A          253 NQIS-NLAP-L------SGLTKLTELKLGANQ---------------ISNISPLAGLTALTNLELNENQLEDISPISNLK  309 (466)
T ss_dssp             SCCC-CCGG-G------TTCTTCSEEECCSSC---------------CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCT
T ss_pred             Cccc-cchh-h------hcCCCCCEEECCCCc---------------cCccccccCCCccCeEEcCCCcccCchhhcCCC
Confidence            7533 2222 2      237889998888742               22111 135788999999888622 12366788


Q ss_pred             CcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCC
Q 007616          453 PLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVG  532 (596)
Q Consensus       453 ~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~  532 (596)
                      +|++|++++|...       +.              .|...+++|+.| ++++|..     +.+            +.+.
T Consensus       310 ~L~~L~L~~n~l~-------~~--------------~~~~~l~~L~~L-~l~~n~l-----~~~------------~~l~  350 (466)
T 1o6v_A          310 NLTYLTLYFNNIS-------DI--------------SPVSSLTKLQRL-FFYNNKV-----SDV------------SSLA  350 (466)
T ss_dssp             TCSEEECCSSCCS-------CC--------------GGGGGCTTCCEE-ECCSSCC-----CCC------------GGGT
T ss_pred             CCCEEECcCCcCC-------Cc--------------hhhccCccCCEe-ECCCCcc-----CCc------------hhhc
Confidence            9999999988621       11              111117888888 8888863     332            2466


Q ss_pred             CCCCCCeeecCCCCCCccCCCCCCCCCccEEEEecCc
Q 007616          533 NLTSLERLELPRCPVLRSFPENVLPPSLVYLSIYLCP  569 (596)
Q Consensus       533 ~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~C~  569 (596)
                      .+++|+.|++++|+ +..++....+++|+.|++++|+
T Consensus       351 ~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          351 NLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA  386 (466)
T ss_dssp             TCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE
T ss_pred             cCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc
Confidence            78888888888865 4444444457788888888874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=3e-25  Score=237.59  Aligned_cols=410  Identities=15%  Similarity=0.116  Sum_probs=234.2

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-c
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-I  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i  210 (596)
                      .+..++.+.+..+.+..        ..|..|+.+++|++|++++|.++.++ ..++.+++|++|++++| .+..+|.. +
T Consensus        24 ~~~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~   94 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITY--------IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWF   94 (549)
T ss_dssp             CCTTCCEEECCSSCCCE--------ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHH
T ss_pred             CCCCccEEECcCCccCc--------cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHh
Confidence            34577888887776554        34677899999999999999999775 67899999999999999 66666655 9


Q ss_pred             cCCCccceeecCCCCccc--cccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhc
Q 007616          211 GNLVNLRHLKDSHSNLLE--EMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  288 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~--~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l  288 (596)
                      +++++|++|++++|. +.  ..|..++++++|++|++.++..........+..+++|+ .+.+.+..-    ....+..+
T Consensus        95 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l----~~~~~~~l  168 (549)
T 2z81_A           95 GPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSL----RNYQSQSL  168 (549)
T ss_dssp             TTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTC----CEECTTTT
T ss_pred             ccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcc----cccChhhh
Confidence            999999999999998 65  35677999999999998887633322223344455555 666654221    12233457


Q ss_pred             CCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCC---CCCCCCCCCCccEEEEecCCCCCCCC-----C
Q 007616          289 NGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFP---AWLGQSSFENLVVLRFKNCNQCTTLP-----S  360 (596)
Q Consensus       289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~l~-----~  360 (596)
                      ..+++|+.|+++++..... .......+++|+.|++++|....++   ..+. ..+++|+.|+++++...+..+     .
T Consensus       169 ~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~  246 (549)
T 2z81_A          169 KSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKL  246 (549)
T ss_dssp             TTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred             hccccCceEecccCccccc-chhhHhhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHHH
Confidence            7788899998887653211 1112234788999999998766542   2222 246778888887765322111     2


Q ss_pred             CCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc---------------ccccceeEEecCCCCCCC
Q 007616          361 VGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE---------------WEERIGLSIVRCPKLKGR  425 (596)
Q Consensus       361 l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------l~~~~~l~l~~c~~L~~~  425 (596)
                      +..+++|+.+++.+|...+..............+++|+.|.+.++.-               ...+..+.+.++ ++. .
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~-~  324 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVF-L  324 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCC-C
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccc-c
Confidence            34456667777666542111000000001112245555555543210               012224444443 233 4


Q ss_pred             CCC----CCCCCCEEEEeeccCh------hccCCCCCCcceEEecCCccc--------------ceeeEeccccccc---
Q 007616          426 LPQ----RFSSLERIVITSCEQL------LVSYTALPPLCELEIDGFSEL--------------FLILQIQGWRSRA---  478 (596)
Q Consensus       426 ~p~----~l~~L~~L~l~~c~~l------~~~~~~l~~L~~L~l~~c~~l--------------l~~l~~~~~~~l~---  478 (596)
                      +|.    .+++|+.|++++|.-.      ...+..+++|++|++++|...              ++.++++++. ++   
T Consensus       325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp  403 (549)
T 2z81_A          325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP  403 (549)
T ss_dssp             CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC
T ss_pred             CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCC
Confidence            442    3566666666665422      112445566666666665421              2233333321 11   


Q ss_pred             ---ccCCccccc--------ccccccchhhhccccccccccccccceecccC-C-------CCCCCCCCCCCCCCCCCCe
Q 007616          479 ---EILPQEIRI--------PNQESLLDGLQKLSHITRISMVGSLLVYIAEG-G-------EFPQLESLSFVGNLTSLER  539 (596)
Q Consensus       479 ---~~~p~l~~l--------~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~-~-------~~~~L~~l~~~~~l~~L~~  539 (596)
                         ..+++++.+        .+|..+.++|+.| ++++|..     +.++.. .       ..++++.+|....+++|+.
T Consensus       404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L-~Ls~N~l-----~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~  477 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL-DVSNNNL-----DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLV  477 (549)
T ss_dssp             SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEE-ECCSSCC-----SCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCE
T ss_pred             hhhcccccccEEECCCCCcccccchhcCCceEE-ECCCCCh-----hhhcccCChhcEEECCCCccCcCCCcccCccCCE
Confidence               111222222        1222223455555 5555542     222210 0       0233344444456778888


Q ss_pred             eecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616          540 LELPRCPVLRSFPENVL--PPSLVYLSIYLCP  569 (596)
Q Consensus       540 L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~  569 (596)
                      |++++| +++.++...+  +++|++|++++|+
T Consensus       478 L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          478 MKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             EECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence            888884 5677666433  6788888887764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=4.4e-24  Score=234.55  Aligned_cols=249  Identities=17%  Similarity=0.146  Sum_probs=153.1

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCC-cc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFP-DI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~-~i  210 (596)
                      .+.+++++.+..+.+..        ..|..|+++++|++|++++|.++.+ |..++++++|++|++++| .+..+|. .+
T Consensus        23 ~~~~l~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~   93 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRR--------LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF   93 (680)
T ss_dssp             SCTTCSEEECCSSCCCC--------CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             cCCCCcEEECCCCCCCC--------cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhh
Confidence            45678888887765553        2234577788888888888877755 556777888888888887 6667775 47


Q ss_pred             cCCCccceeecCCCCcccccc-ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      +++++|++|++++|. +..+| ..++++++|++|++.++.... .....+.++++|+ .+.+.+..-.. .... .....
T Consensus        94 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~-~L~L~~n~l~~-~~~~-~~~~~  168 (680)
T 1ziw_A           94 AFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQ-ELLLSNNKIQA-LKSE-ELDIF  168 (680)
T ss_dssp             TTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCC-EEECCSSCCCC-BCHH-HHGGG
T ss_pred             ccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccc-cCchhhcccccCC-EEEccCCcccc-cCHH-Hhhcc
Confidence            788888888888887 56665 347778888888776654432 1223344455555 55555432111 1110 11122


Q ss_pred             CccccccccccccCCcchhhhhccC---------------------------CCCCccEEEEeccCCCCC-CCCCCCCCC
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLK---------------------------PHYGLKELKVRGYGGTKF-PAWLGQSSF  341 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~---------------------------~~~~L~~L~l~~~~~~~~-~~~~~~~~~  341 (596)
                      .+++|+.|+++++.... ..+..+.                           ..++|+.|++++|..... |.++.  .+
T Consensus       169 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~--~l  245 (680)
T 1ziw_A          169 ANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL--GL  245 (680)
T ss_dssp             TTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG--GG
T ss_pred             ccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh--cc
Confidence            34667777776653211 1111111                           226778888888765543 33443  33


Q ss_pred             --CCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          342 --ENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       342 --~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                        ++|+.|++++|......+ .++.+++|+.|++++|...+..+..+.+      +++|+.|++.+
T Consensus       246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~  305 (680)
T 1ziw_A          246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRYLNLKR  305 (680)
T ss_dssp             GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT------CTTCCEEECTT
T ss_pred             CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC------CCCccEEeccc
Confidence              348899998887544443 5778888999999887644444434433      78888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.2e-24  Score=235.91  Aligned_cols=138  Identities=18%  Similarity=0.160  Sum_probs=94.8

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|..+..  ++++|++++|.++.+ |..|+++++|++|++++|......|..++++++|++|++++|......|..+++
T Consensus        26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  103 (606)
T 3t6q_A           26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG  103 (606)
T ss_dssp             SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred             cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence            67776643  799999999999977 568999999999999999444444778999999999999999943445677999


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN  303 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  303 (596)
                      +++|++|++.++..... ....+..+++|+ .+.+.+..-..    .....+.++++|+.|+++.+.
T Consensus       104 l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~-~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A          104 PKALKHLFFIQTGISSI-DFIPLHNQKTLE-SLYLGSNHISS----IKLPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             CTTCCEEECTTSCCSCG-GGSCCTTCTTCC-EEECCSSCCCC----CCCCTTCCCTTCCEEECCSSC
T ss_pred             cccccEeeccccCcccC-CcchhccCCccc-EEECCCCcccc----cCcccccCCcccCEEEcccCc
Confidence            99999999876665441 012234445555 55555422111    000112235666666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=2e-25  Score=238.96  Aligned_cols=391  Identities=20%  Similarity=0.232  Sum_probs=249.9

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++|++|++++|.++.+ |..++.+++|++|++++| .+..+| ..++++++|++|++++|. +..+|.. +
T Consensus        19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~   94 (549)
T 2z81_A           19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWF   94 (549)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHH
T ss_pred             cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHh
Confidence            6787664  7999999999999976 568999999999999999 566555 679999999999999999 7777765 9


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      +++++|++|++.++..........+..+++|+ .+.+.+......   .....+.++++|+.|+++++. .....+..+.
T Consensus        95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~-~L~L~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~  169 (549)
T 2z81_A           95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ-TLRIGNVETFSE---IRRIDFAGLTSLNELEIKALS-LRNYQSQSLK  169 (549)
T ss_dssp             TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC-EEEEEESSSCCE---ECTTTTTTCCEEEEEEEEETT-CCEECTTTTT
T ss_pred             ccCCCCcEEECCCCcccccchhhhhhccCCcc-EEECCCCccccc---cCHhhhhcccccCeeeccCCc-ccccChhhhh
Confidence            99999999998877665433333455666666 777765432221   112347788999999998876 3444566777


Q ss_pred             CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC----CCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT----LPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                      .+++|+.|+++++....+|.++.. .+++|+.|++++|...+.    .+....+++|+.|++.++......+.....  .
T Consensus       170 ~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~--~  246 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK--L  246 (549)
T ss_dssp             TCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG--G
T ss_pred             ccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHH--H
Confidence            888999999999887766655421 578999999999885442    223456789999999887422211111100  1


Q ss_pred             CCCCCCcceeecccCc----------------cccccceeEEecCCCCC----CCCC---CCCCCCCEEEEeeccC--hh
Q 007616          391 SEPFPSLETLCFEDMQ----------------EWEERIGLSIVRCPKLK----GRLP---QRFSSLERIVITSCEQ--LL  445 (596)
Q Consensus       391 ~~~~~~L~~L~l~~~~----------------~l~~~~~l~l~~c~~L~----~~~p---~~l~~L~~L~l~~c~~--l~  445 (596)
                      ...+++|+.+++.++.                .+..+..+.+.++.--.    ..++   ...++|+.|++++|.-  ++
T Consensus       247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip  326 (549)
T 2z81_A          247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP  326 (549)
T ss_dssp             GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC
T ss_pred             hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC
Confidence            1226778888877643                12222234443321000    0000   1246788888888752  23


Q ss_pred             ccC-CCCCCcceEEecCCccc---------------ceeeEecccccc--------cccCCccccc--------cccccc
Q 007616          446 VSY-TALPPLCELEIDGFSEL---------------FLILQIQGWRSR--------AEILPQEIRI--------PNQESL  493 (596)
Q Consensus       446 ~~~-~~l~~L~~L~l~~c~~l---------------l~~l~~~~~~~l--------~~~~p~l~~l--------~~p~~~  493 (596)
                      ..+ ..+++|++|++++|...               ++.++++++.-.        ...+++|+.+        .+|..+
T Consensus       327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~  406 (549)
T 2z81_A          327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC  406 (549)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC
T ss_pred             HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh
Confidence            222 36899999999999742               344445443210        1223333333        233333


Q ss_pred             --chhhhccccccccccccccceecccCCCCCCCCCCC--------CCCCCCCCCeeecCCCCCCccCCCCCCCCCccEE
Q 007616          494 --LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS--------FVGNLTSLERLELPRCPVLRSFPENVLPPSLVYL  563 (596)
Q Consensus       494 --l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~--------~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L  563 (596)
                        +++|+.| ++++|.     ++.++... .++|+.+.        ....+++|++|++++| +++.+|....+++|++|
T Consensus       407 ~~~~~L~~L-~Ls~N~-----l~~l~~~~-~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L  478 (549)
T 2z81_A          407 QWPEKMRFL-NLSSTG-----IRVVKTCI-PQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVM  478 (549)
T ss_dssp             CCCTTCCEE-ECTTSC-----CSCCCTTS-CTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEE
T ss_pred             cccccccEE-ECCCCC-----cccccchh-cCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEE
Confidence              4555555 555554     23332210 12222221        1236788888888885 67788876567889999


Q ss_pred             EEecC
Q 007616          564 SIYLC  568 (596)
Q Consensus       564 ~i~~C  568 (596)
                      ++++|
T Consensus       479 ~Ls~N  483 (549)
T 2z81_A          479 KISRN  483 (549)
T ss_dssp             ECCSS
T ss_pred             ecCCC
Confidence            99887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=3e-25  Score=240.54  Aligned_cols=385  Identities=16%  Similarity=0.149  Sum_probs=236.2

Q ss_pred             CCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccc-------------ccc--------
Q 007616          126 DGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEV-------------LSE--------  184 (596)
Q Consensus       126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-------------lp~--------  184 (596)
                      .|+.+... ++++.+.+..+...+        .+|++++++++|++|+|++|.+..             +|.        
T Consensus        73 ~GV~C~~~-~~V~~L~L~~~~l~g--------~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l  143 (636)
T 4eco_A           73 PGVSLNSN-GRVTGLSLEGFGASG--------RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRM  143 (636)
T ss_dssp             TTEEECTT-CCEEEEECTTSCCEE--------EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHT
T ss_pred             CCeEEcCC-CCEEEEEecCcccCC--------cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHh
Confidence            55555432 678888887776665        789999999999999999996621             111        


Q ss_pred             -------------ccc-------------------cCCcCcEEEccc-cccccccCCcccCCCccceeecCCCCcccc--
Q 007616          185 -------------SVS-------------------TLYNLQTLILEY-CYRLKKLFPDIGNLVNLRHLKDSHSNLLEE--  229 (596)
Q Consensus       185 -------------~i~-------------------~l~~L~~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~--  229 (596)
                                   .++                   ....++.+.+.. +..+..+|+.++++++|++|++++|. +..  
T Consensus       144 ~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~  222 (636)
T 4eco_A          144 HYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAEN  222 (636)
T ss_dssp             HHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGG
T ss_pred             hHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-ccccc
Confidence                         111                   011122222222 22565699999999999999999999 666  


Q ss_pred             ----------------cccccc--CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh-HHHHhcCC
Q 007616          230 ----------------MPLRIG--KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED-AKEAQLNG  290 (596)
Q Consensus       230 ----------------lp~~l~--~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~-~~~~~l~~  290 (596)
                                      +|..++  ++++|++|++.++.... .....+.++++|+ .+.+.+....   .. .++..+..
T Consensus       223 ~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~-~L~Ls~n~~l---~~~~lp~~~~~  297 (636)
T 4eco_A          223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQ-LINVACNRGI---SGEQLKDDWQA  297 (636)
T ss_dssp             BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCC-EEECTTCTTS---CHHHHHHHHHH
T ss_pred             ccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHHHhcCCCCC-EEECcCCCCC---ccccchHHHHh
Confidence                            999999  99999999998776533 2234555666666 7777654312   22 33444444


Q ss_pred             ------ccccccccccccCCcchhhhh--ccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-C
Q 007616          291 ------KKKLEALSPKWGNKIQTCVFE--MLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-S  360 (596)
Q Consensus       291 ------~~~L~~L~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~  360 (596)
                            +++|+.|+++.+...  .++.  .+..+++|+.|++++|... .+| .+.  .+++|+.|++++|... .+| .
T Consensus       298 L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~--~l~~L~~L~L~~N~l~-~lp~~  371 (636)
T 4eco_A          298 LADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG--SEIKLASLNLAYNQIT-EIPAN  371 (636)
T ss_dssp             HHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE--EEEEESEEECCSSEEE-ECCTT
T ss_pred             hhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhC--CCCCCCEEECCCCccc-cccHh
Confidence                  488888888887643  4555  6778888999999888877 777 444  6788889999888744 555 5


Q ss_pred             CCCCCc-cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC----------C
Q 007616          361 VGHLPS-LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ----------R  429 (596)
Q Consensus       361 l~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~----------~  429 (596)
                      ++.+++ |+.|++++|. +..++..+..    ..+++|+.|+++++               ++.+..|.          .
T Consensus       372 l~~l~~~L~~L~Ls~N~-l~~lp~~~~~----~~l~~L~~L~Ls~N---------------~l~~~~p~~l~~~~~~~~~  431 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNK-LKYIPNIFDA----KSVSVMSAIDFSYN---------------EIGSVDGKNFDPLDPTPFK  431 (636)
T ss_dssp             SEEECTTCCEEECCSSC-CSSCCSCCCT----TCSSCEEEEECCSS---------------CTTTTTTCSSCTTCSSCCC
T ss_pred             hhhhcccCcEEEccCCc-Ccccchhhhh----cccCccCEEECcCC---------------cCCCcchhhhccccccccc
Confidence            778888 9999998876 3355543322    12447888888763               33333333          2


Q ss_pred             CCCCCEEEEeeccC--hhc-cCCCCCCcceEEecCCcccceeeEecccccccc---cCCccccc--------cccccc--
Q 007616          430 FSSLERIVITSCEQ--LLV-SYTALPPLCELEIDGFSELFLILQIQGWRSRAE---ILPQEIRI--------PNQESL--  493 (596)
Q Consensus       430 l~~L~~L~l~~c~~--l~~-~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~---~~p~l~~l--------~~p~~~--  493 (596)
                      +++|+.|++++|.-  ++. .+..+++|++|++++|...  .+..........   .+++|+.+        .+|..+  
T Consensus       432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            34677777766642  221 1234667777777776522  111000000000   00011111        122221  


Q ss_pred             --chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCC------CCCCccCCCCC-CCCCccEEE
Q 007616          494 --LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPR------CPVLRSFPENV-LPPSLVYLS  564 (596)
Q Consensus       494 --l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~------c~~l~~lp~~~-~~~~L~~L~  564 (596)
                        +++|+.| ++++|.     ++.+|.           .+..+++|++|++++      |...+.+|... .+++|++|+
T Consensus       510 ~~l~~L~~L-~Ls~N~-----l~~ip~-----------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          510 TTLPYLVGI-DLSYNS-----FSKFPT-----------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             TTCTTCCEE-ECCSSC-----CSSCCC-----------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             ccCCCcCEE-ECCCCC-----CCCcCh-----------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence              4555555 555555     222433           466778888888854      33345556432 267888888


Q ss_pred             EecCch
Q 007616          565 IYLCPY  570 (596)
Q Consensus       565 i~~C~~  570 (596)
                      +++|.-
T Consensus       573 Ls~N~l  578 (636)
T 4eco_A          573 IGSNDI  578 (636)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=8.4e-24  Score=232.32  Aligned_cols=107  Identities=21%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-CcccC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIGN  212 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~  212 (596)
                      .+++.+.+..+....        ..|..++++++|++|++++|.++.+|. .++.+++|++|++++| .+..+| ..+++
T Consensus        49 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~  119 (680)
T 1ziw_A           49 SQLTSLDVGFNTISK--------LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK  119 (680)
T ss_dssp             TTCSEEECCSSCCCC--------CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred             CcCcEEECCCCccCc--------cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc
Confidence            356666665554433        345667778888888888888887775 4778888888888887 555555 45778


Q ss_pred             CCccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616          213 LVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       213 L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~  250 (596)
                      +++|++|++++|......|..++++++|++|++.++..
T Consensus       120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            88888888888873333445577777888777655443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=2.1e-23  Score=216.35  Aligned_cols=315  Identities=17%  Similarity=0.117  Sum_probs=164.4

Q ss_pred             cccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcc
Q 007616          160 PNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTS  239 (596)
Q Consensus       160 p~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~  239 (596)
                      +.+++.+++|++|++++|.++.+| .++.+++|++|++++| .+..+|  ++.+++|++|++++|. +..+|  ++++++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~  107 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTK  107 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTT
T ss_pred             ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCc
Confidence            344566777777777777777665 4667777777777777 566554  6677777777777776 55554  666777


Q ss_pred             cCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCc
Q 007616          240 LRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGL  319 (596)
Q Consensus       240 L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L  319 (596)
                      |++|++.++.....    .+..+++|+ .+.+.+..- ...      .+..+++|+.|+++.+......   .+..+++|
T Consensus       108 L~~L~L~~N~l~~l----~~~~l~~L~-~L~l~~N~l-~~l------~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L  172 (457)
T 3bz5_A          108 LTYLNCDTNKLTKL----DVSQNPLLT-YLNCARNTL-TEI------DVSHNTQLTELDCHLNKKITKL---DVTPQTQL  172 (457)
T ss_dssp             CCEEECCSSCCSCC----CCTTCTTCC-EEECTTSCC-SCC------CCTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred             CCEEECCCCcCCee----cCCCCCcCC-EEECCCCcc-cee------ccccCCcCCEEECCCCCccccc---ccccCCcC
Confidence            77776654443221    122333333 333332111 000      1444555555555554321111   23445566


Q ss_pred             cEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcce
Q 007616          320 KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLET  399 (596)
Q Consensus       320 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~  399 (596)
                      +.|++++|....+|  +.  .+++|+.|++++|... .+ .++.+++|+.|++++|. ++.++  +      ..+++|+.
T Consensus       173 ~~L~ls~n~l~~l~--l~--~l~~L~~L~l~~N~l~-~~-~l~~l~~L~~L~Ls~N~-l~~ip--~------~~l~~L~~  237 (457)
T 3bz5_A          173 TTLDCSFNKITELD--VS--QNKLLNRLNCDTNNIT-KL-DLNQNIQLTFLDCSSNK-LTEID--V------TPLTQLTY  237 (457)
T ss_dssp             CEEECCSSCCCCCC--CT--TCTTCCEEECCSSCCS-CC-CCTTCTTCSEEECCSSC-CSCCC--C------TTCTTCSE
T ss_pred             CEEECCCCccceec--cc--cCCCCCEEECcCCcCC-ee-ccccCCCCCEEECcCCc-ccccC--c------cccCCCCE
Confidence            66666666555554  22  4556666666655522 22 25555666666666543 22232  1      11455555


Q ss_pred             eecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccc
Q 007616          400 LCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAE  479 (596)
Q Consensus       400 L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~  479 (596)
                      |++++               +++++..+..+++|+.|++++           .+|+.|++++|.            .+. 
T Consensus       238 L~l~~---------------N~l~~~~~~~l~~L~~L~l~~-----------n~L~~L~l~~n~------------~~~-  278 (457)
T 3bz5_A          238 FDCSV---------------NPLTELDVSTLSKLTTLHCIQ-----------TDLLEIDLTHNT------------QLI-  278 (457)
T ss_dssp             EECCS---------------SCCSCCCCTTCTTCCEEECTT-----------CCCSCCCCTTCT------------TCC-
T ss_pred             EEeeC---------------CcCCCcCHHHCCCCCEEeccC-----------CCCCEEECCCCc------------cCC-
Confidence            55554               222322223344444444322           123333333333            111 


Q ss_pred             cCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCC
Q 007616          480 ILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPS  559 (596)
Q Consensus       480 ~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~  559 (596)
                              .+|.+-+++|+.| ++++|+.    ++.+|..  .++++.+. +.++++|++|++++| +++.++ -..+++
T Consensus       279 --------~~~~~~l~~L~~L-~Ls~n~~----l~~l~~~--~~~L~~L~-l~~~~~L~~L~L~~N-~l~~l~-l~~l~~  340 (457)
T 3bz5_A          279 --------YFQAEGCRKIKEL-DVTHNTQ----LYLLDCQ--AAGITELD-LSQNPKLVYLYLNNT-ELTELD-VSHNTK  340 (457)
T ss_dssp             --------EEECTTCTTCCCC-CCTTCTT----CCEEECT--TCCCSCCC-CTTCTTCCEEECTTC-CCSCCC-CTTCTT
T ss_pred             --------cccccccccCCEE-ECCCCcc----cceeccC--CCcceEec-hhhcccCCEEECCCC-cccccc-cccCCc
Confidence                    1222226677777 7777776    6666642  45555553 666677777777763 455554 233567


Q ss_pred             ccEEEEecC
Q 007616          560 LVYLSIYLC  568 (596)
Q Consensus       560 L~~L~i~~C  568 (596)
                      |+.|+++++
T Consensus       341 L~~L~l~~N  349 (457)
T 3bz5_A          341 LKSLSCVNA  349 (457)
T ss_dssp             CSEEECCSS
T ss_pred             CcEEECCCC
Confidence            777776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=2.5e-23  Score=222.96  Aligned_cols=117  Identities=25%  Similarity=0.247  Sum_probs=93.1

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCccc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIG  211 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~  211 (596)
                      .+.+++.+.+..+.+..        ..|..|+.+++|++|++++|.++.+ |..++.+++|++|++++| .+..+|..  
T Consensus        50 ~~~~L~~L~Ls~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--  118 (562)
T 3a79_B           50 LPPRTKALSLSQNSISE--------LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--  118 (562)
T ss_dssp             SCTTCCEEECCSSCCCC--------CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--
T ss_pred             CCCCcCEEECCCCCccc--------cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--
Confidence            34677888887776553        2346789999999999999999977 677899999999999999 78899887  


Q ss_pred             CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEeccCCCCCchhccch
Q 007616          212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVGKGNCSGLKELRSL  262 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L  262 (596)
                      .+++|++|++++|. +..+|  ..++++++|++|++.++.... ..+..+.++
T Consensus       119 ~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L  169 (562)
T 3a79_B          119 PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL  169 (562)
T ss_dssp             CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS
T ss_pred             ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc
Confidence            89999999999998 66654  679999999999988776543 334444444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.91  E-value=2.8e-23  Score=223.37  Aligned_cols=350  Identities=20%  Similarity=0.157  Sum_probs=223.8

Q ss_pred             cccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccc--ccCCcccCCCccceeecCCCCcccccc-cccc
Q 007616          160 PNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEEMP-LRIG  235 (596)
Q Consensus       160 p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~l~  235 (596)
                      |..|+.+++|++|++++|.++.+|. .++.+++|++|++++| .+.  .+|..++++++|++|++++|. +..++ ..++
T Consensus        93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~  170 (570)
T 2z63_A           93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR  170 (570)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGH
T ss_pred             HhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHcc
Confidence            4678999999999999999998875 6899999999999999 555  478999999999999999998 66654 5588


Q ss_pred             CCccc----CCCCcEEeccCCCCCchhccchhhccceEEEcCc---------------------------CCC-------
Q 007616          236 KLTSL----RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGL---------------------------ENV-------  277 (596)
Q Consensus       236 ~l~~L----~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~---------------------------~~~-------  277 (596)
                      .+++|    ++|++.++...... ...+... .++ .+.+.+.                           ...       
T Consensus       171 ~l~~L~~~~~~L~l~~n~l~~~~-~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          171 VLHQMPLLNLSLDLSLNPMNFIQ-PGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             HHHTCTTCCCEEECTTCCCCEEC-TTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred             chhccchhhhhcccCCCCceecC-HHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence            88887    55554333222100 0000000 111 1111110                           000       


Q ss_pred             --------------------CCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCC
Q 007616          278 --------------------NDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLG  337 (596)
Q Consensus       278 --------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  337 (596)
                                          ....+.....+..+++|+.|+++.+...  ..+..+... +|+.|++++|....+|.+  
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~--  322 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQFPTL--  322 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSCCBC--
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--hhhhhhccC-CccEEeeccCcccccCcc--
Confidence                                0001112234566788999999877432  345556666 999999999998877763  


Q ss_pred             CCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEe--CccccCCCCCCCCCCcceeecccCc---------
Q 007616          338 QSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV--GLEFCGNYCSEPFPSLETLCFEDMQ---------  406 (596)
Q Consensus       338 ~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~---------  406 (596)
                        .+++|+.|++++|......+. +.+++|+.|++++|......  +..+.+      +++|+.|+++++.         
T Consensus       323 --~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~------~~~L~~L~l~~n~l~~~~~~~~  393 (570)
T 2z63_A          323 --KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFG------TTSLKYLDLSFNGVITMSSNFL  393 (570)
T ss_dssp             --BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHT------CSCCCEEECCSCSEEEEEEEEE
T ss_pred             --cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccc------cCccCEEECCCCcccccccccc
Confidence              678999999999886555544 77889999999887533221  222322      6778888777642         


Q ss_pred             cccccceeEEecCCCCCCCCC----CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEecccccccc
Q 007616          407 EWEERIGLSIVRCPKLKGRLP----QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAE  479 (596)
Q Consensus       407 ~l~~~~~l~l~~c~~L~~~~p----~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~  479 (596)
                      .+..+..+.+.++ .+.+..|    ..+++|+.|++++|..   .+..+..+++|++|++++|......+     +....
T Consensus       394 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----p~~~~  467 (570)
T 2z63_A          394 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-----PDIFT  467 (570)
T ss_dssp             TCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-----CSCCT
T ss_pred             ccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc-----hhhhh
Confidence            2222234444443 2222222    3578888898888863   24567778889999988886321011     01111


Q ss_pred             cCCccccc---------cccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCC
Q 007616          480 ILPQEIRI---------PNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVL  548 (596)
Q Consensus       480 ~~p~l~~l---------~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l  548 (596)
                      .+++|+.+         ..|..+  +++|+.| ++++|.     ++.++..          .+..+++|++|++++|+--
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~-----l~~~~~~----------~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMASNQ-----LKSVPDG----------IFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSC-----CSCCCTT----------TTTTCTTCCEEECCSSCBC
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEE-eCCCCc-----CCCCCHH----------HhhcccCCcEEEecCCccc
Confidence            22222222         123333  7899999 999997     5555442          5778999999999998644


Q ss_pred             cc
Q 007616          549 RS  550 (596)
Q Consensus       549 ~~  550 (596)
                      ..
T Consensus       532 ~~  533 (570)
T 2z63_A          532 CS  533 (570)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.90  E-value=1e-23  Score=211.91  Aligned_cols=301  Identities=17%  Similarity=0.165  Sum_probs=155.1

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  243 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L  243 (596)
                      ..+++|+.|+++++.+..+|. ++.+++|++|++++| .+..+|. ++++++|++|++++|. +..+| .+.++++|++|
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLREL  115 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEE
T ss_pred             hhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEE
Confidence            345555555555555555543 555555666666555 4555544 5555555666665554 44443 35555555555


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK  323 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  323 (596)
                      ++.++.....   ..                             +..+++|+.|+++++....  .+..+..+++|+.|+
T Consensus       116 ~l~~n~i~~~---~~-----------------------------~~~l~~L~~L~l~~n~~~~--~~~~~~~l~~L~~L~  161 (347)
T 4fmz_A          116 YLNEDNISDI---SP-----------------------------LANLTKMYSLNLGANHNLS--DLSPLSNMTGLNYLT  161 (347)
T ss_dssp             ECTTSCCCCC---GG-----------------------------GTTCTTCCEEECTTCTTCC--CCGGGTTCTTCCEEE
T ss_pred             ECcCCcccCc---hh-----------------------------hccCCceeEEECCCCCCcc--cccchhhCCCCcEEE
Confidence            5432221110   00                             2223333344443332111  112234455556666


Q ss_pred             EeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616          324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE  403 (596)
Q Consensus       324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  403 (596)
                      +++|....++. +.  .+++|+.|++++|. .+.++.+..+++|+.|++++|.. ..++. +      ..+++|+.|+++
T Consensus       162 l~~~~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~------~~~~~L~~L~l~  229 (347)
T 4fmz_A          162 VTESKVKDVTP-IA--NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQI-TDITP-V------ANMTRLNSLKIG  229 (347)
T ss_dssp             CCSSCCCCCGG-GG--GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCC-CCCGG-G------GGCTTCCEEECC
T ss_pred             ecCCCcCCchh-hc--cCCCCCEEEccCCc-ccccccccCCCccceeecccCCC-CCCch-h------hcCCcCCEEEcc
Confidence            65555544443 22  45566666666654 33344455566666666665432 22211 1      115566666655


Q ss_pred             cCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccCh-hccCCCCCCcceEEecCCcccceeeEeccccccccc
Q 007616          404 DMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEI  480 (596)
Q Consensus       404 ~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~  480 (596)
                      ++.               ++ .++  ..+++|+.|++++|.-- ...+..+++|++|++++|...       +.+.+.  
T Consensus       230 ~n~---------------l~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~--  284 (347)
T 4fmz_A          230 NNK---------------IT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQIS-------DISVLN--  284 (347)
T ss_dssp             SSC---------------CC-CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-------CCGGGG--
T ss_pred             CCc---------------cC-CCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccC-------CChhhc--
Confidence            531               11 111  24566777777666421 234666777888888777511       111000  


Q ss_pred             CCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCc
Q 007616          481 LPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSL  560 (596)
Q Consensus       481 ~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L  560 (596)
                                  .+++|+.| ++++|..    .+..+.           .+..+++|++|++++|+ ++.++....+++|
T Consensus       285 ------------~l~~L~~L-~L~~n~l----~~~~~~-----------~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L  335 (347)
T 4fmz_A          285 ------------NLSQLNSL-FLNNNQL----GNEDME-----------VIGGLTNLTTLFLSQNH-ITDIRPLASLSKM  335 (347)
T ss_dssp             ------------GCTTCSEE-ECCSSCC----CGGGHH-----------HHHTCTTCSEEECCSSS-CCCCGGGGGCTTC
T ss_pred             ------------CCCCCCEE-ECcCCcC----CCcChh-----------HhhccccCCEEEccCCc-cccccChhhhhcc
Confidence                        06777888 8888874    222222           35667888888888865 6666554447788


Q ss_pred             cEEEEecCc
Q 007616          561 VYLSIYLCP  569 (596)
Q Consensus       561 ~~L~i~~C~  569 (596)
                      ++|++++|+
T Consensus       336 ~~L~l~~N~  344 (347)
T 4fmz_A          336 DSADFANQV  344 (347)
T ss_dssp             SEESSSCC-
T ss_pred             ceeehhhhc
Confidence            888888775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=6.7e-23  Score=214.28  Aligned_cols=320  Identities=20%  Similarity=0.254  Sum_probs=231.8

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  243 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L  243 (596)
                      ..+++++.|+++++.+..+|. +..+++|++|++++| .+..+|. ++++++|++|++++|. +..++. ++++++|++|
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL  117 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence            457899999999999999875 889999999999999 7888877 9999999999999998 777777 9999999999


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK  323 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  323 (596)
                      ++.++......   .+..+++|+ .+.+.+..- ...     ..+..+++|+.|++.... .   ....+..+++|+.|+
T Consensus       118 ~L~~n~l~~~~---~~~~l~~L~-~L~l~~n~l-~~~-----~~~~~l~~L~~L~l~~~~-~---~~~~~~~l~~L~~L~  183 (466)
T 1o6v_A          118 TLFNNQITDID---PLKNLTNLN-RLELSSNTI-SDI-----SALSGLTSLQQLSFGNQV-T---DLKPLANLTTLERLD  183 (466)
T ss_dssp             ECCSSCCCCCG---GGTTCTTCS-EEEEEEEEE-CCC-----GGGTTCTTCSEEEEEESC-C---CCGGGTTCTTCCEEE
T ss_pred             ECCCCCCCCCh---HHcCCCCCC-EEECCCCcc-CCC-----hhhccCCcccEeecCCcc-c---CchhhccCCCCCEEE
Confidence            98776554433   245555555 566554321 111     136778888888886321 1   122367788899999


Q ss_pred             EeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecc
Q 007616          324 VRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFE  403 (596)
Q Consensus       324 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  403 (596)
                      +++|....++. +.  .+++|++|++++|... .++.++.+++|+.|++++|. ++.++ .+      ..+++|+.|+++
T Consensus       184 l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~l------~~l~~L~~L~l~  251 (466)
T 1o6v_A          184 ISSNKVSDISV-LA--KLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQ-LKDIG-TL------ASLTNLTDLDLA  251 (466)
T ss_dssp             CCSSCCCCCGG-GG--GCTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSC-CCCCG-GG------GGCTTCSEEECC
T ss_pred             CcCCcCCCChh-hc--cCCCCCEEEecCCccc-ccccccccCCCCEEECCCCC-cccch-hh------hcCCCCCEEECC
Confidence            99988776654 33  6788999999988744 34447778899999998875 33332 12      227888888888


Q ss_pred             cCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-hccCCCCCCcceEEecCCcccceeeEecccccccccC
Q 007616          404 DMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEIL  481 (596)
Q Consensus       404 ~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~  481 (596)
                      ++.               +.+..| ..+++|+.|++++|.-- ...+..+++|++|++++|...       +..      
T Consensus       252 ~n~---------------l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~-------~~~------  303 (466)
T 1o6v_A          252 NNQ---------------ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-------DIS------  303 (466)
T ss_dssp             SSC---------------CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCS-------CCG------
T ss_pred             CCc---------------cccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCccc-------Cch------
Confidence            742               221111 35789999999988622 122778899999999988621       111      


Q ss_pred             CcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCcc
Q 007616          482 PQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLV  561 (596)
Q Consensus       482 p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~  561 (596)
                              +-.-+++|+.| ++++|..     ..++            .+..+++|++|++++| .++.++....+++|+
T Consensus       304 --------~~~~l~~L~~L-~L~~n~l-----~~~~------------~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~  356 (466)
T 1o6v_A          304 --------PISNLKNLTYL-TLYFNNI-----SDIS------------PVSSLTKLQRLFFYNN-KVSDVSSLANLTNIN  356 (466)
T ss_dssp             --------GGGGCTTCSEE-ECCSSCC-----SCCG------------GGGGCTTCCEEECCSS-CCCCCGGGTTCTTCC
T ss_pred             --------hhcCCCCCCEE-ECcCCcC-----CCch------------hhccCccCCEeECCCC-ccCCchhhccCCCCC
Confidence                    11117889999 9999974     3222            2567899999999997 577776555589999


Q ss_pred             EEEEecCc
Q 007616          562 YLSIYLCP  569 (596)
Q Consensus       562 ~L~i~~C~  569 (596)
                      +|++++|+
T Consensus       357 ~L~l~~n~  364 (466)
T 1o6v_A          357 WLSAGHNQ  364 (466)
T ss_dssp             EEECCSSC
T ss_pred             EEeCCCCc
Confidence            99999985

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=5.8e-23  Score=218.24  Aligned_cols=370  Identities=14%  Similarity=0.084  Sum_probs=217.1

Q ss_pred             cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      .+|..+.  ++|++|++++|.++.++ ..+..+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|..  
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--   87 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--   87 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecCcc--
Confidence            5777665  89999999999999876 68999999999999999 56655 7789999999999999998 8899987  


Q ss_pred             CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc--ccccccccCCc-chhhhhc
Q 007616          236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL--EALSPKWGNKI-QTCVFEM  312 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~~-~~~~~~~  312 (596)
                      .+++|++|++.++..........+..+++|+ .+.+.+..- .   .   ..+..+++|  +.|+++++... ....+..
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~-~L~L~~n~l-~---~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLK-FLGLSTTHL-E---K---SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC-EEEEEESSC-C---G---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcce-EEEecCccc-c---h---hhccccccceeeEEEeeccccccccccccc
Confidence            8999999998877765433334566666666 666665321 1   1   235556666  88888776420 1222223


Q ss_pred             cCCCC-CccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCC-------CCCCCCCCCCCC------------------
Q 007616          313 LKPHY-GLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCN-------QCTTLPSVGHLP------------------  365 (596)
Q Consensus       313 l~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-------~~~~l~~l~~l~------------------  365 (596)
                      +..+. ....++++++... .++.... ..+++|+.+++++|.       ..+.++.++.++                  
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  238 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI  238 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHH
Confidence            32222 1112333333322 1222111 246667777776664       111122333333                  


Q ss_pred             ---------ccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc-c-----------cccceeEEecCCCCCC
Q 007616          366 ---------SLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE-W-----------EERIGLSIVRCPKLKG  424 (596)
Q Consensus       366 ---------~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l-----------~~~~~l~l~~c~~L~~  424 (596)
                               +|+.|++++|...+.++..+... ....+++|+.+++.+..- +           ..+..+.+.++.-...
T Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~  317 (520)
T 2z7x_B          239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDY-SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM  317 (520)
T ss_dssp             HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCC-CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred             HHHHHhhhCcccEEEeecccccCccccchhhc-ccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence                     44455554443222333332110 002256666666554321 0           1233566666543222


Q ss_pred             CCCCCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEecccccc---cccCCccccc---------cc
Q 007616          425 RLPQRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRSR---AEILPQEIRI---------PN  489 (596)
Q Consensus       425 ~~p~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l---~~~~p~l~~l---------~~  489 (596)
                      ..+..+++|++|++++|.-   .+..+..+++|++|++++|...       +.+.+   ...+++|+.+         .+
T Consensus       318 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l  390 (520)
T 2z7x_B          318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-------ELSKIAEMTTQMKSLQQLDISQNSVSYDE  390 (520)
T ss_dssp             CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-------BHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred             cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-------ccccchHHHhhCCCCCEEECCCCcCCccc
Confidence            2236789999999998862   3566788999999999988622       11100   0111222211         02


Q ss_pred             cccc---chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCC-CCCCccEEEE
Q 007616          490 QESL---LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENV-LPPSLVYLSI  565 (596)
Q Consensus       490 p~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~~~L~~L~i  565 (596)
                      |...   +++|+.| ++++|..    .+.+|.           .+.  ++|++|++++| +++.+|... .+++|++|++
T Consensus       391 ~~~~~~~l~~L~~L-~Ls~N~l----~~~~~~-----------~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L  451 (520)
T 2z7x_B          391 KKGDCSWTKSLLSL-NMSSNIL----TDTIFR-----------CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNV  451 (520)
T ss_dssp             GGCSCCCCTTCCEE-ECCSSCC----CGGGGG-----------SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEEC
T ss_pred             ccchhccCccCCEE-ECcCCCC----Ccchhh-----------hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEEC
Confidence            2221   3444444 4444443    122222           111  68999999985 677888643 3789999999


Q ss_pred             ecCc
Q 007616          566 YLCP  569 (596)
Q Consensus       566 ~~C~  569 (596)
                      ++|.
T Consensus       452 ~~N~  455 (520)
T 2z7x_B          452 ASNQ  455 (520)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            9883

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=2.2e-23  Score=217.73  Aligned_cols=344  Identities=15%  Similarity=0.127  Sum_probs=196.3

Q ss_pred             CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-cc-ccccccCCcCcEEEccccccccccCCccc
Q 007616          134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-VL-SESVSTLYNLQTLILEYCYRLKKLFPDIG  211 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~  211 (596)
                      +.+++.+.+..+.+..        ..|..|+++++|++|++++|.+. .+ |..++.+++|++|++++|......|..++
T Consensus        29 ~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  100 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAE--------LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN  100 (455)
T ss_dssp             CTTCCEEECCSSCCCE--------ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred             CCccCEEEecCCccCc--------CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence            3455555555444332        23455566666666666666554 33 34456666666666666622222345566


Q ss_pred             CCCccceeecCCCCcccccccc--ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          212 NLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      ++++|++|++++|...+.+|..  ++++++|++|++.++........                             ..+.
T Consensus       101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----------------------------~~~~  151 (455)
T 3v47_A          101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-----------------------------SFFL  151 (455)
T ss_dssp             TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC-----------------------------GGGG
T ss_pred             CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc-----------------------------cccC
Confidence            6666666666666522223333  55566666665543332211100                             0144


Q ss_pred             CccccccccccccCCcchhhhhccCCC--CCccEEEEeccCCCCCCCCCC-------CCCCCCccEEEEecCCCCCCCC-
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPH--YGLKELKVRGYGGTKFPAWLG-------QSSFENLVVLRFKNCNQCTTLP-  359 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~~~l~-  359 (596)
                      .+++|+.|+++++.. ....+..+..+  .+|+.|+++++....++....       ...+++|+.|++++|...+..+ 
T Consensus       152 ~l~~L~~L~L~~n~l-~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~  230 (455)
T 3v47_A          152 NMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK  230 (455)
T ss_dssp             GCTTCCEEECTTCCB-SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred             CCCcccEEeCCCCcc-cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence            566677777766542 11222222222  578888888887666554321       0145688899998887554333 


Q ss_pred             C---CCCCCccceeeccCccCceEeCccc-cCC-----CCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---
Q 007616          360 S---VGHLPSLKNLVIKGMAKVKSVGLEF-CGN-----YCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---  427 (596)
Q Consensus       360 ~---l~~l~~L~~L~L~~~~~l~~~~~~~-~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---  427 (596)
                      .   ....++|+.|++++|.......... ...     ......++|+.|+++++               ++.+..|   
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n---------------~l~~~~~~~~  295 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS---------------KIFALLKSVF  295 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS---------------CCCEECTTTT
T ss_pred             hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc---------------cccccchhhc
Confidence            1   1223788888888775433211000 000     00011356777776663               2332233   


Q ss_pred             CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhcccc
Q 007616          428 QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSH  502 (596)
Q Consensus       428 ~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~  502 (596)
                      ..+++|+.|++++|.--   +..+..+++|++|++++|...       +              ..|..+  +++|+.| +
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-------~--------------~~~~~~~~l~~L~~L-~  353 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-------S--------------IDSRMFENLDKLEVL-D  353 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-------E--------------ECGGGGTTCTTCCEE-E
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-------C--------------cChhHhcCcccCCEE-E
Confidence            35788999999887632   456778899999999998621       1              011222  7889999 9


Q ss_pred             ccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecC
Q 007616          503 ITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLC  568 (596)
Q Consensus       503 l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C  568 (596)
                      +++|.     ++.++..          .+..+++|++|++++ ++++.+|...+  +++|++|+++++
T Consensus       354 Ls~N~-----l~~~~~~----------~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          354 LSYNH-----IRALGDQ----------SFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CCSSC-----CCEECTT----------TTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCc-----ccccChh----------hccccccccEEECCC-CccccCCHhHhccCCcccEEEccCC
Confidence            99987     4444322          577899999999999 46888887543  789999999865

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1.4e-22  Score=210.17  Aligned_cols=344  Identities=15%  Similarity=0.157  Sum_probs=233.2

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+.+.         .+| .++.+++|++|++++|.++.+|  ++.+++|++|++++| .+..+|  +++++
T Consensus        42 ~~L~~L~Ls~n~l~---------~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~  106 (457)
T 3bz5_A           42 ATLTSLDCHNSSIT---------DMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLT  106 (457)
T ss_dssp             TTCCEEECCSSCCC---------CCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCT
T ss_pred             CCCCEEEccCCCcc---------cCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCC
Confidence            45677777665444         345 5889999999999999999986  889999999999999 677775  89999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..+|  ++.+++|++|++.++.....    .+..++.|+ .+.+.........      .+..+++|
T Consensus       107 ~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l----~l~~l~~L~-~L~l~~n~~~~~~------~~~~l~~L  172 (457)
T 3bz5_A          107 KLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTLTEI----DVSHNTQLT-ELDCHLNKKITKL------DVTPQTQL  172 (457)
T ss_dssp             TCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCCSCC----CCTTCTTCC-EEECTTCSCCCCC------CCTTCTTC
T ss_pred             cCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcccee----ccccCCcCC-EEECCCCCccccc------ccccCCcC
Confidence            99999999998 77776  88999999998876655442    245556666 7777665433322      36788999


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG  374 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~  374 (596)
                      +.|+++++.....   + +..+++|+.|++++|....++  +.  .+++|+.|++++|... .+| ++.+++|+.|++++
T Consensus       173 ~~L~ls~n~l~~l---~-l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L~Ls~N~l~-~ip-~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          173 TTLDCSFNKITEL---D-VSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSV  242 (457)
T ss_dssp             CEEECCSSCCCCC---C-CTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCS-CCC-CTTCTTCSEEECCS
T ss_pred             CEEECCCCcccee---c-cccCCCCCEEECcCCcCCeec--cc--cCCCCCEEECcCCccc-ccC-ccccCCCCEEEeeC
Confidence            9999998864332   1 677899999999999887764  33  7899999999999844 477 88999999999999


Q ss_pred             ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccChhccCCCCCC
Q 007616          375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQLLVSYTALPP  453 (596)
Q Consensus       375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l~~~~~~l~~  453 (596)
                      |. ++.++.        ..+++|+.|++++. +++   .+.+.+|+.+. .+| ..+++|+.|++++|..+.......++
T Consensus       243 N~-l~~~~~--------~~l~~L~~L~l~~n-~L~---~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~  308 (457)
T 3bz5_A          243 NP-LTELDV--------STLSKLTTLHCIQT-DLL---EIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQLYLLDCQAAG  308 (457)
T ss_dssp             SC-CSCCCC--------TTCTTCCEEECTTC-CCS---CCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred             Cc-CCCcCH--------HHCCCCCEEeccCC-CCC---EEECCCCccCC-cccccccccCCEEECCCCcccceeccCCCc
Confidence            75 333332        23788888877652 222   44555554333 444 46788888888888755333334455


Q ss_pred             cceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCC----
Q 007616          454 LCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLS----  529 (596)
Q Consensus       454 L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~----  529 (596)
                      |+.|++++|+.+ +.+.++++. +++         ++-.-+++|+.| +++++..     +.++.      |..++    
T Consensus       309 L~~L~l~~~~~L-~~L~L~~N~-l~~---------l~l~~l~~L~~L-~l~~N~l-----~~l~~------L~~L~l~~n  365 (457)
T 3bz5_A          309 ITELDLSQNPKL-VYLYLNNTE-LTE---------LDVSHNTKLKSL-SCVNAHI-----QDFSS------VGKIPALNN  365 (457)
T ss_dssp             CSCCCCTTCTTC-CEEECTTCC-CSC---------CCCTTCTTCSEE-ECCSSCC-----CBCTT------GGGSSGGGT
T ss_pred             ceEechhhcccC-CEEECCCCc-ccc---------cccccCCcCcEE-ECCCCCC-----CCccc------cccccccCC
Confidence            555555555432 333333321 111         111116677777 7777663     22221      22221    


Q ss_pred             ---CCCCCCCCCeeecCCCCCCccCCCC
Q 007616          530 ---FVGNLTSLERLELPRCPVLRSFPEN  554 (596)
Q Consensus       530 ---~~~~l~~L~~L~l~~c~~l~~lp~~  554 (596)
                         +...+.+|+.+++++++--..+|..
T Consensus       366 ~l~g~~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          366 NFEAEGQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             SEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred             cEEecceeeecCccccccCcEEEEcChh
Confidence               2224466777888875544567764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=226.65  Aligned_cols=305  Identities=15%  Similarity=0.052  Sum_probs=200.0

Q ss_pred             ccccCCCCccccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCC-cccc-ccccccCCcCcEEEccc
Q 007616          122 ESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTA-IEVL-SESVSTLYNLQTLILEY  199 (596)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~l~~L~~L~L~~  199 (596)
                      ..+|..+..  .+.+++.|.+..+.+..        ..|.+|..+++|++|++++|. +..+ |..++++++|++|+|++
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~--------i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRT--------VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCE--------ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCc--------cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            334555554  77889999998876664        357789999999999999994 4566 67899999999999999


Q ss_pred             cccccccCCcccCCCccceeecCCCCcccccccc--ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCC
Q 007616          200 CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR--IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENV  277 (596)
Q Consensus       200 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~  277 (596)
                      |......|..++++++|++|++++|.....+|..  ++++++|++|++.++..........+.++++|+ .+.+.+..-.
T Consensus        83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~  161 (844)
T 3j0a_A           83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIF  161 (844)
T ss_dssp             CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCC
T ss_pred             CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCC
Confidence            9433444888999999999999999844446665  899999999999888765543334566777777 7777664322


Q ss_pred             CCHhhHHHHhcCCc--cccccccccccCCcchhhhhccCCCC------CccEEEEeccCCC-CCCCCCCC----------
Q 007616          278 NDAEDAKEAQLNGK--KKLEALSPKWGNKIQTCVFEMLKPHY------GLKELKVRGYGGT-KFPAWLGQ----------  338 (596)
Q Consensus       278 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~-~~~~~~~~----------  338 (596)
                      ...    ...+..+  ++|+.|+++.+.. ....+..+..++      .|+.|++++|... ..+..+..          
T Consensus       162 ~~~----~~~l~~l~~~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L  236 (844)
T 3j0a_A          162 LVC----EHELEPLQGKTLSFFSLAANSL-YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL  236 (844)
T ss_dssp             CCC----SGGGHHHHHCSSCCCEECCSBS-CCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred             eeC----HHHcccccCCccceEECCCCcc-ccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence            111    1122223  6889999987753 222222333333      4999999988532 12221110          


Q ss_pred             --------------------------CCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616          339 --------------------------SSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS  391 (596)
Q Consensus       339 --------------------------~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~  391 (596)
                                                ...++|+.|++++|......+ .++.+++|+.|++++|......+..+.+    
T Consensus       237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~----  312 (844)
T 3j0a_A          237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG----  312 (844)
T ss_dssp             ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT----
T ss_pred             ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC----
Confidence                                      012567777777766443333 4666777777777776433332333322    


Q ss_pred             CCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC--h-hccCCCCCCcceEEecCCc
Q 007616          392 EPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ--L-LVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       392 ~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~--l-~~~~~~l~~L~~L~l~~c~  463 (596)
                        +++|+.|+++++               ++.+..|   ..+++|+.|++++|.-  + +..+..+++|++|++++|.
T Consensus       313 --l~~L~~L~Ls~N---------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          313 --LDNLQVLNLSYN---------------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             --CSSCCEEEEESC---------------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             --CCCCCEEECCCC---------------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence              667777766653               2332222   3577888888887752  1 2346678888888888876

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=7.3e-22  Score=215.25  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=74.2

Q ss_pred             ccCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc
Q 007616          132 RFSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD  209 (596)
Q Consensus       132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~  209 (596)
                      .+|..++.|.+..+.+..         +| .+|.++++|++|+|++|.|+.+|+ .|+++++|++|+|++| .++.+|..
T Consensus        49 ~lp~~~~~LdLs~N~i~~---------l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~  118 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRH---------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALG  118 (635)
T ss_dssp             SSCTTCCEEECTTSCCCE---------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGG
T ss_pred             CCCcCCCEEEeeCCCCCC---------CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHH
Confidence            456678888887776653         33 456777777777777777776654 4677777777777777 56666643


Q ss_pred             -ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccC
Q 007616          210 -IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKG  251 (596)
Q Consensus       210 -i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~  251 (596)
                       ++++++|++|++++|. +..+|.. ++++++|++|++.++...
T Consensus       119 ~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             HhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccc
Confidence             6777777777777776 6666654 677777777776655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=4.8e-22  Score=208.72  Aligned_cols=204  Identities=21%  Similarity=0.210  Sum_probs=126.5

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  +++++|++++|.++.+ |..+..+++|++|++++| .+..+ |..++++++|++|++++|. +..+|.+ +
T Consensus        25 ~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  100 (477)
T 2id5_A           25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF  100 (477)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred             cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence            5666553  5889999999999877 467888999999999998 55555 6778899999999999988 7788765 6


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      +++++|++|++.++....      +                        ....+..+++|+.|+++.+.. .......+.
T Consensus       101 ~~l~~L~~L~Ls~n~i~~------~------------------------~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~  149 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVI------L------------------------LDYMFQDLYNLKSLEVGDNDL-VYISHRAFS  149 (477)
T ss_dssp             TTCTTCCEEECTTSCCCE------E------------------------CTTTTTTCTTCCEEEECCTTC-CEECTTSST
T ss_pred             cCCCCCCEEECCCCcccc------C------------------------ChhHccccccCCEEECCCCcc-ceeChhhcc
Confidence            788888888764332210      0                        001134445555555554432 222233445


Q ss_pred             CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616          315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE  392 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  392 (596)
                      .+++|+.|++++|....++.. +.  .+++|+.|++++|......+ .++.+++|+.|++++|..++.++.....     
T Consensus       150 ~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----  222 (477)
T 2id5_A          150 GLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-----  222 (477)
T ss_dssp             TCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-----
T ss_pred             CCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-----
Confidence            556666666666665555432 22  45666666666665333222 4556666666666666665555543322     


Q ss_pred             CCCCcceeeccc
Q 007616          393 PFPSLETLCFED  404 (596)
Q Consensus       393 ~~~~L~~L~l~~  404 (596)
                       ..+|+.|++++
T Consensus       223 -~~~L~~L~l~~  233 (477)
T 2id5_A          223 -GLNLTSLSITH  233 (477)
T ss_dssp             -TCCCSEEEEES
T ss_pred             -CccccEEECcC
Confidence             23555555554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=5.7e-22  Score=199.11  Aligned_cols=276  Identities=18%  Similarity=0.215  Sum_probs=189.7

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+.++...         .+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+++++
T Consensus        44 ~~L~~L~l~~~~i~---------~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~  110 (347)
T 4fmz_A           44 ESITKLVVAGEKVA---------SIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLT  110 (347)
T ss_dssp             TTCSEEECCSSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCT
T ss_pred             ccccEEEEeCCccc---------cch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCC
Confidence            45677777665444         344 37889999999999999998887 899999999999999 777775 589999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..+|. +..+++|++|++.++...  ..+..+..++.|+ .+.+.+...... .     .+..+++|
T Consensus       111 ~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~--~~~~~~~~l~~L~-~L~l~~~~~~~~-~-----~~~~l~~L  179 (347)
T 4fmz_A          111 NLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNL--SDLSPLSNMTGLN-YLTVTESKVKDV-T-----PIANLTDL  179 (347)
T ss_dssp             TCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTC--CCCGGGTTCTTCC-EEECCSSCCCCC-G-----GGGGCTTC
T ss_pred             cCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCc--ccccchhhCCCCc-EEEecCCCcCCc-h-----hhccCCCC
Confidence            99999999998 778776 888999999987655322  2233355555565 666655432221 1     15677788


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG  374 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~  374 (596)
                      +.|+++++......   .+..+++|+.|++++|....++. +.  .+++|+.|++++|. ++.++.++.+++|+.|++++
T Consensus       180 ~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~--~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~  252 (347)
T 4fmz_A          180 YSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQITDITP-VA--NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGT  252 (347)
T ss_dssp             SEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCS
T ss_pred             CEEEccCCcccccc---cccCCCccceeecccCCCCCCch-hh--cCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCC
Confidence            88888776533222   25567788888888887766654 33  57788888888876 34445577788888888887


Q ss_pred             ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccCh---hccCCCC
Q 007616          375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQL---LVSYTAL  451 (596)
Q Consensus       375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l---~~~~~~l  451 (596)
                      |. +..++ .+      ..+++|+.|+++++. +..+.        .     -..+++|+.|++++|.-.   +..+..+
T Consensus       253 n~-l~~~~-~~------~~l~~L~~L~l~~n~-l~~~~--------~-----~~~l~~L~~L~L~~n~l~~~~~~~l~~l  310 (347)
T 4fmz_A          253 NQ-ISDIN-AV------KDLTKLKMLNVGSNQ-ISDIS--------V-----LNNLSQLNSLFLNNNQLGNEDMEVIGGL  310 (347)
T ss_dssp             SC-CCCCG-GG------TTCTTCCEEECCSSC-CCCCG--------G-----GGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred             Cc-cCCCh-hH------hcCCCcCEEEccCCc-cCCCh--------h-----hcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence            64 33331 12      237788888777641 21110        0     124678888888887632   3446677


Q ss_pred             CCcceEEecCCc
Q 007616          452 PPLCELEIDGFS  463 (596)
Q Consensus       452 ~~L~~L~l~~c~  463 (596)
                      ++|++|++++|+
T Consensus       311 ~~L~~L~L~~n~  322 (347)
T 4fmz_A          311 TNLTTLFLSQNH  322 (347)
T ss_dssp             TTCSEEECCSSS
T ss_pred             ccCCEEEccCCc
Confidence            888888888876

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=5.5e-22  Score=202.50  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=76.8

Q ss_pred             CceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-Cccc
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIG  211 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~  211 (596)
                      .+++.+.+..+...         .+|.. +..+++|++|++++|.++.++. .++.+++|++|++++| .+..+| ..++
T Consensus        45 ~~l~~l~l~~~~l~---------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~  114 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR---------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQ  114 (390)
T ss_dssp             CCCSEEEEESCEES---------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCceEEEecCCchh---------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhc
Confidence            34555555554433         45655 5778888888888888887754 7788888888888888 565554 4478


Q ss_pred             CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEecc
Q 007616          212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~  250 (596)
                      ++++|++|++++|. +..+|.+ ++++++|++|++.++..
T Consensus       115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A          115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc
Confidence            88888888888887 7788877 47888888888765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=5.7e-22  Score=202.41  Aligned_cols=299  Identities=13%  Similarity=0.108  Sum_probs=217.1

Q ss_pred             cccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCccc
Q 007616          164 AELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  240 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L  240 (596)
                      ..+.++++|+++++.++.+|.. +..+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|+. ++++++|
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLL  119 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCC
Confidence            3578999999999999999876 588999999999999 6776664 79999999999999999 7776554 8999999


Q ss_pred             CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616          241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK  320 (596)
Q Consensus       241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  320 (596)
                      ++|++.++....      ++.                        ..+..+++|+.|+++.+.. ....+..+..+++|+
T Consensus       120 ~~L~L~~n~l~~------l~~------------------------~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~  168 (390)
T 3o6n_A          120 TVLVLERNDLSS------LPR------------------------GIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQ  168 (390)
T ss_dssp             CEEECCSSCCCC------CCT------------------------TTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCC
T ss_pred             CEEECCCCccCc------CCH------------------------HHhcCCCCCcEEECCCCcc-CccChhhccCCCCCC
Confidence            999875543321      110                        1134566777777776653 223334566778899


Q ss_pred             EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCccee
Q 007616          321 ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETL  400 (596)
Q Consensus       321 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L  400 (596)
                      .|++++|....++.  .  .+++|+.|++++|.. +   .+...++|+.|++++|. +..++..        .+++|+.|
T Consensus       169 ~L~l~~n~l~~~~~--~--~l~~L~~L~l~~n~l-~---~~~~~~~L~~L~l~~n~-l~~~~~~--------~~~~L~~L  231 (390)
T 3o6n_A          169 NLQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDASHNS-INVVRGP--------VNVELTIL  231 (390)
T ss_dssp             EEECCSSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCSSCSEEECCSSC-CCEEECC--------CCSSCCEE
T ss_pred             EEECCCCcCCcccc--c--cccccceeecccccc-c---ccCCCCcceEEECCCCe-eeecccc--------ccccccEE
Confidence            99999888766542  2  678899999988762 2   23344688999998865 4444332        26788888


Q ss_pred             ecccCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccCh---hccCCCCCCcceEEecCCcccceeeEecccc
Q 007616          401 CFEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQL---LVSYTALPPLCELEIDGFSELFLILQIQGWR  475 (596)
Q Consensus       401 ~l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~  475 (596)
                      +++++               ++++ .+  ..+++|++|++++|.--   +..+..+++|++|++++|...  .       
T Consensus       232 ~l~~n---------------~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~-------  286 (390)
T 3o6n_A          232 KLQHN---------------NLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--A-------  286 (390)
T ss_dssp             ECCSS---------------CCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC--E-------
T ss_pred             ECCCC---------------CCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc--c-------
Confidence            88874               2221 12  35789999999988632   566788999999999998621  1       


Q ss_pred             cccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCC
Q 007616          476 SRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPE  553 (596)
Q Consensus       476 ~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~  553 (596)
                                   +|...  +++|+.| ++++|.     ++.+|.           .+..+++|++|++++| .++.++.
T Consensus       287 -------------~~~~~~~l~~L~~L-~L~~n~-----l~~~~~-----------~~~~l~~L~~L~L~~N-~i~~~~~  335 (390)
T 3o6n_A          287 -------------LNLYGQPIPTLKVL-DLSHNH-----LLHVER-----------NQPQFDRLENLYLDHN-SIVTLKL  335 (390)
T ss_dssp             -------------EECSSSCCTTCCEE-ECCSSC-----CCCCGG-----------GHHHHTTCSEEECCSS-CCCCCCC
T ss_pred             -------------cCcccCCCCCCCEE-ECCCCc-----ceecCc-----------cccccCcCCEEECCCC-ccceeCc
Confidence                         11111  7889999 999997     555555           4667899999999996 4777763


Q ss_pred             CCCCCCccEEEEecCc
Q 007616          554 NVLPPSLVYLSIYLCP  569 (596)
Q Consensus       554 ~~~~~~L~~L~i~~C~  569 (596)
                       ..+++|++|++++++
T Consensus       336 -~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          336 -STHHTLKNLTLSHND  350 (390)
T ss_dssp             -CTTCCCSEEECCSSC
T ss_pred             -hhhccCCEEEcCCCC
Confidence             346899999999864

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=2.8e-22  Score=207.76  Aligned_cols=264  Identities=17%  Similarity=0.101  Sum_probs=126.0

Q ss_pred             cCcccccccCCCcEEeecCCCcc-ccccccccCCcC-------------cEEEccccccccccCCcccCCCccceeecCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE-VLSESVSTLYNL-------------QTLILEYCYRLKKLFPDIGNLVNLRHLKDSH  223 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L-------------~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~  223 (596)
                      .+|++++++++|++|++++|.+. .+|.+++.+.+|             ++|++++| .++.+|..   .++|++|++++
T Consensus        25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~---~~~L~~L~l~~  100 (454)
T 1jl5_A           25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL---PPHLESLVASC  100 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC---CTTCSEEECCS
T ss_pred             hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC---cCCCCEEEccC
Confidence            67777777778888887777776 677777777664             77777777 56666652   35677777777


Q ss_pred             CCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616          224 SNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN  303 (596)
Q Consensus       224 ~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  303 (596)
                      |. ++.+|..   +++|++|++.++.....   ..+.  ..|+ .+.+.+..- ..    ++ .+..+++|+.|+++++.
T Consensus       101 n~-l~~lp~~---~~~L~~L~l~~n~l~~l---~~~~--~~L~-~L~L~~n~l-~~----lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A          101 NS-LTELPEL---PQSLKSLLVDNNNLKAL---SDLP--PLLE-YLGVSNNQL-EK----LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             SC-CSSCCCC---CTTCCEEECCSSCCSCC---CSCC--TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSC
T ss_pred             Cc-CCccccc---cCCCcEEECCCCccCcc---cCCC--CCCC-EEECcCCCC-CC----Cc-ccCCCCCCCEEECCCCc
Confidence            76 5556653   25566666544333221   1111  2333 444443211 11    11 25566666666666554


Q ss_pred             CcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCc
Q 007616          304 KIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGL  383 (596)
Q Consensus       304 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~  383 (596)
                      ...  .+.   ...+|+.|++++|....+|. +.  .+++|+.|++++|.. +.+|..  .++|+.|++++|. ++.++.
T Consensus       165 l~~--lp~---~~~~L~~L~L~~n~l~~l~~-~~--~l~~L~~L~l~~N~l-~~l~~~--~~~L~~L~l~~n~-l~~lp~  232 (454)
T 1jl5_A          165 LKK--LPD---LPPSLEFIAAGNNQLEELPE-LQ--NLPFLTAIYADNNSL-KKLPDL--PLSLESIVAGNNI-LEELPE  232 (454)
T ss_dssp             CSC--CCC---CCTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSCC-SSCCCC--CTTCCEEECCSSC-CSSCCC
T ss_pred             Ccc--cCC---CcccccEEECcCCcCCcCcc-cc--CCCCCCEEECCCCcC-CcCCCC--cCcccEEECcCCc-CCcccc
Confidence            221  111   12356666666666555552 22  455666666665552 223322  1355556655542 223331


Q ss_pred             cccCCCCCCCCCCcceeecccCc------cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceE
Q 007616          384 EFCGNYCSEPFPSLETLCFEDMQ------EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCEL  457 (596)
Q Consensus       384 ~~~~~~~~~~~~~L~~L~l~~~~------~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L  457 (596)
                       +.      .+++|+.|++++..      ....+..+.+.++ ++. .+|..+++|+.|++++|.-- ..-...++|++|
T Consensus       233 -~~------~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N-~l~-~l~~~~~~L~~L~ls~N~l~-~l~~~~~~L~~L  302 (454)
T 1jl5_A          233 -LQ------NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDN-YLT-DLPELPQSLTFLDVSENIFS-GLSELPPNLYYL  302 (454)
T ss_dssp             -CT------TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSS-CCS-CCCCCCTTCCEEECCSSCCS-EESCCCTTCCEE
T ss_pred             -cC------CCCCCCEEECCCCcCCcccccccccCEEECCCC-ccc-ccCcccCcCCEEECcCCccC-cccCcCCcCCEE
Confidence             21      15555555555421      0011123333332 334 34555566666666655311 100112455555


Q ss_pred             EecCCc
Q 007616          458 EIDGFS  463 (596)
Q Consensus       458 ~l~~c~  463 (596)
                      ++++|.
T Consensus       303 ~l~~N~  308 (454)
T 1jl5_A          303 NASSNE  308 (454)
T ss_dssp             ECCSSC
T ss_pred             ECcCCc
Confidence            555553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.87  E-value=2.8e-21  Score=200.19  Aligned_cols=258  Identities=16%  Similarity=0.074  Sum_probs=160.2

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCcc-------------ceeecCCCCcccccc
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNL-------------RHLKDSHSNLLEEMP  231 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L-------------~~L~l~~~~~l~~lp  231 (596)
                      +.++|++|++++|.+..+|++++++++|++|++++|...+.+|..++++.+|             ++|++++|. ++.+|
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp   87 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred             ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence            4689999999999999999999999999999999996667999999999876             999999998 88888


Q ss_pred             ccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCc-cccccccccccCCcchhhh
Q 007616          232 LRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-KKLEALSPKWGNKIQTCVF  310 (596)
Q Consensus       232 ~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~  310 (596)
                      ..   .++|++|++.++......   .  .+..++ .+.+.+..- ..        +... ++|+.|+++.+....  .+
T Consensus        88 ~~---~~~L~~L~l~~n~l~~lp---~--~~~~L~-~L~l~~n~l-~~--------l~~~~~~L~~L~L~~n~l~~--lp  147 (454)
T 1jl5_A           88 EL---PPHLESLVASCNSLTELP---E--LPQSLK-SLLVDNNNL-KA--------LSDLPPLLEYLGVSNNQLEK--LP  147 (454)
T ss_dssp             SC---CTTCSEEECCSSCCSSCC---C--CCTTCC-EEECCSSCC-SC--------CCSCCTTCCEEECCSSCCSS--CC
T ss_pred             CC---cCCCCEEEccCCcCCccc---c--ccCCCc-EEECCCCcc-Cc--------ccCCCCCCCEEECcCCCCCC--Cc
Confidence            73   468888887665544311   1  124444 555554321 11        1122 689999998876432  33


Q ss_pred             hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       311 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                       .+..+++|+.|++++|....+|...     .+|++|++++|. ++.+|.++.+++|+.|++++|. +..++.       
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~~~-----~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N~-l~~l~~-------  212 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPDLP-----PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKLPD-------  212 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCCCC-----TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCC-------
T ss_pred             -ccCCCCCCCEEECCCCcCcccCCCc-----ccccEEECcCCc-CCcCccccCCCCCCEEECCCCc-CCcCCC-------
Confidence             5888999999999999988887643     589999999997 4557889999999999999975 333332       


Q ss_pred             CCCCCCcceeecccCc--------cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCC
Q 007616          391 SEPFPSLETLCFEDMQ--------EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGF  462 (596)
Q Consensus       391 ~~~~~~L~~L~l~~~~--------~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c  462 (596)
                        ..++|+.|+++++.        .+..+..+.+.++ +++ .+|..+++|+.|++++|.-- .....+++|++|++++|
T Consensus       213 --~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N-~l~-~l~~~~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          213 --LPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLK-TLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCS-SCCSCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS
T ss_pred             --CcCcccEEECcCCcCCcccccCCCCCCCEEECCCC-cCC-cccccccccCEEECCCCccc-ccCcccCcCCEEECcCC
Confidence              14688888887742        1222235555552 444 35666677777777776421 21123466777777777


Q ss_pred             c
Q 007616          463 S  463 (596)
Q Consensus       463 ~  463 (596)
                      .
T Consensus       288 ~  288 (454)
T 1jl5_A          288 I  288 (454)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.87  E-value=3.1e-21  Score=202.48  Aligned_cols=292  Identities=20%  Similarity=0.194  Sum_probs=213.9

Q ss_pred             ccCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-
Q 007616          132 RFSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-  209 (596)
Q Consensus       132 ~~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-  209 (596)
                      .++..++.+.+..+.+..        ..|..|..+++|++|+|++|.++.+ |..++++++|++|++++| .+..+|.. 
T Consensus        29 ~~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~   99 (477)
T 2id5_A           29 GIPTETRLLDLGKNRIKT--------LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGV   99 (477)
T ss_dssp             CCCTTCSEEECCSSCCCE--------ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTS
T ss_pred             CCCCCCcEEECCCCccce--------ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCccc
Confidence            345677888887776554        2356789999999999999999976 778999999999999999 78888865 


Q ss_pred             ccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          210 IGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       210 i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      ++++++|++|++++|......|..+.++++|++|++.++..... ....+..+.+|+ .+.+.+..-.    ......+.
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~-~L~l~~n~l~----~~~~~~l~  173 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLE-QLTLEKCNLT----SIPTEALS  173 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCC-EEEEESCCCS----SCCHHHHT
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCC-EEECCCCcCc----ccChhHhc
Confidence            78999999999999994334456699999999999876654321 122344555666 6777654221    22234477


Q ss_pred             CccccccccccccCCcchhhhhccCCCCCccEEEEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCc
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPS  366 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~  366 (596)
                      .+++|+.|+++.+.. .......+..+++|+.|++++|. ...+|....  ...+|+.|++++|. ++.+|  .++.+++
T Consensus       174 ~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l~~  249 (477)
T 2id5_A          174 HLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHCN-LTAVPYLAVRHLVY  249 (477)
T ss_dssp             TCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESSC-CCSCCHHHHTTCTT
T ss_pred             ccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCCc-ccccCHHHhcCccc
Confidence            889999999988763 33334456778999999999876 344555444  44589999999987 45666  5788999


Q ss_pred             cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc-
Q 007616          367 LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE-  442 (596)
Q Consensus       367 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~-  442 (596)
                      |+.|++++|. +..++.....     .+++|+.|++++.               ++.+..|   ..+++|+.|++++|. 
T Consensus       250 L~~L~Ls~n~-l~~~~~~~~~-----~l~~L~~L~L~~n---------------~l~~~~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          250 LRFLNLSYNP-ISTIEGSMLH-----ELLRLQEIQLVGG---------------QLAVVEPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             CCEEECCSSC-CCEECTTSCT-----TCTTCCEEECCSS---------------CCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred             cCeeECCCCc-CCccChhhcc-----ccccCCEEECCCC---------------ccceECHHHhcCcccCCEEECCCCcC
Confidence            9999999876 4455443222     2889999988873               2332223   357899999999985 


Q ss_pred             -Ch-hccCCCCCCcceEEecCCc
Q 007616          443 -QL-LVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       443 -~l-~~~~~~l~~L~~L~l~~c~  463 (596)
                       .+ +..+..+++|++|++++|+
T Consensus       309 ~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          309 TTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             SCCCGGGBSCGGGCCEEECCSSC
T ss_pred             ceeCHhHcCCCcccCEEEccCCC
Confidence             22 3456788999999999997

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1.3e-21  Score=204.32  Aligned_cols=332  Identities=17%  Similarity=0.124  Sum_probs=227.2

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccc-ccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEE-MPLRI  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp~~l  234 (596)
                      .+|. +  .++|++|++++|.++.+ |..++.+++|++|++++|.....+ |..++++++|++|++++|. +.. .|..+
T Consensus        24 ~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~   99 (455)
T 3v47_A           24 QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF   99 (455)
T ss_dssp             SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred             cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc
Confidence            5666 3  27899999999999976 678999999999999999544456 4569999999999999999 555 47779


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHH--HhcCCccccccccccccCCcchhhhhc
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKE--AQLNGKKKLEALSPKWGNKIQTCVFEM  312 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~  312 (596)
                      +++++|++|++.++...                              +...  ..+..+++|+.|+++.+..........
T Consensus       100 ~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  149 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLD------------------------------GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF  149 (455)
T ss_dssp             TTCTTCCEEECTTSCCB------------------------------THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG
T ss_pred             cCcccCCEEeCCCCCCC------------------------------ccccCcccccCcccCCEEECCCCccCccCcccc
Confidence            99999999986443221                              1111  125667888888888776422222222


Q ss_pred             cCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC---------CCCCCCccceeeccCccCceEeC
Q 007616          313 LKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP---------SVGHLPSLKNLVIKGMAKVKSVG  382 (596)
Q Consensus       313 l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~---------~l~~l~~L~~L~L~~~~~l~~~~  382 (596)
                      +..+++|+.|++++|..... +..+......+|+.|++++|.....-+         .+..+++|+.|++++|......+
T Consensus       150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  229 (455)
T 3v47_A          150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA  229 (455)
T ss_dssp             GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred             cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence            66789999999999986654 333332123689999999887443222         13356899999999986544444


Q ss_pred             ccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-----CCCCCCCEEEEeeccCh---hccCCCCCCc
Q 007616          383 LEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-----QRFSSLERIVITSCEQL---LVSYTALPPL  454 (596)
Q Consensus       383 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-----~~l~~L~~L~l~~c~~l---~~~~~~l~~L  454 (596)
                      ..+..   ....++|+.|+++++.......  .   ...+.+..+     ...++|+.|++++|.-.   +..+..+++|
T Consensus       230 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  301 (455)
T 3v47_A          230 KRFFD---AIAGTKIQSLILSNSYNMGSSF--G---HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL  301 (455)
T ss_dssp             HHHHH---HTTTCCEEEEECTTCTTTSCCT--T---CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhhhc---cccccceeeEeecccccccccc--c---hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCC
Confidence            33221   0113788888888754332210  0   001111001     13478999999998632   5667889999


Q ss_pred             ceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCC
Q 007616          455 CELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVG  532 (596)
Q Consensus       455 ~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~  532 (596)
                      ++|++++|...       +              ..|..+  +++|+.| ++++|.     ++.++..          .+.
T Consensus       302 ~~L~Ls~n~l~-------~--------------~~~~~~~~l~~L~~L-~Ls~N~-----l~~~~~~----------~~~  344 (455)
T 3v47_A          302 EQLTLAQNEIN-------K--------------IDDNAFWGLTHLLKL-NLSQNF-----LGSIDSR----------MFE  344 (455)
T ss_dssp             CEEECTTSCCC-------E--------------ECTTTTTTCTTCCEE-ECCSSC-----CCEECGG----------GGT
T ss_pred             CEEECCCCccc-------c--------------cChhHhcCcccCCEE-ECCCCc-----cCCcChh----------Hhc
Confidence            99999998722       1              012222  7899999 999997     4544332          577


Q ss_pred             CCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecCc
Q 007616          533 NLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLCP  569 (596)
Q Consensus       533 ~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C~  569 (596)
                      .+++|++|++++| .++.++...+  +++|++|++++|.
T Consensus       345 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          345 NLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcccCCEEECCCC-cccccChhhccccccccEEECCCCc
Confidence            8999999999996 5677644333  7899999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=2.9e-21  Score=208.08  Aligned_cols=298  Identities=13%  Similarity=0.120  Sum_probs=175.9

Q ss_pred             ccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccC
Q 007616          165 ELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLR  241 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~  241 (596)
                      .+.++++|+++++.+..+|+. ++.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|+. ++++++|+
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCC
Confidence            355666666666666666543 456666677777666 4444443 56666667777776666 5555443 56666666


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE  321 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  321 (596)
                      +|++.++....      ++                        ...+..+++|+.|+++.+.. ....+..+..+++|+.
T Consensus       127 ~L~L~~n~l~~------l~------------------------~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~  175 (597)
T 3oja_B          127 VLVLERNDLSS------LP------------------------RGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQN  175 (597)
T ss_dssp             EEECCSSCCCC------CC------------------------TTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCE
T ss_pred             EEEeeCCCCCC------CC------------------------HHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcE
Confidence            66654332211      00                        00123444555555554432 2222334555667777


Q ss_pred             EEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceee
Q 007616          322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLC  401 (596)
Q Consensus       322 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~  401 (596)
                      |++++|....++.  .  .+++|+.|++++|.. +   .++..++|+.|++++|. +..++...        +++|+.|+
T Consensus       176 L~L~~N~l~~~~~--~--~l~~L~~L~l~~n~l-~---~l~~~~~L~~L~ls~n~-l~~~~~~~--------~~~L~~L~  238 (597)
T 3oja_B          176 LQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDASHNS-INVVRGPV--------NVELTILK  238 (597)
T ss_dssp             EECTTSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCTTCSEEECCSSC-CCEEECSC--------CSCCCEEE
T ss_pred             EECcCCCCCCcCh--h--hhhhhhhhhcccCcc-c---cccCCchhheeeccCCc-cccccccc--------CCCCCEEE
Confidence            7777776655431  1  566777777777652 2   22334567777777764 33333221        45677777


Q ss_pred             cccCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCCcccceeeEeccccc
Q 007616          402 FEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGFSELFLILQIQGWRS  476 (596)
Q Consensus       402 l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~  476 (596)
                      ++++               .+++ .+  ..+++|+.|++++|.-   .+..+..+++|++|++++|...  .        
T Consensus       239 L~~n---------------~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~--------  292 (597)
T 3oja_B          239 LQHN---------------NLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--A--------  292 (597)
T ss_dssp             CCSS---------------CCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--E--------
T ss_pred             CCCC---------------CCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--C--------
Confidence            7763               2221 11  2467888888887752   2456777888888888887621  1        


Q ss_pred             ccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCC
Q 007616          477 RAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPEN  554 (596)
Q Consensus       477 l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~  554 (596)
                                  +|...  +++|+.| ++++|.     +..+|.           .+..+++|+.|++++|+ +..++. 
T Consensus       293 ------------l~~~~~~l~~L~~L-~Ls~N~-----l~~i~~-----------~~~~l~~L~~L~L~~N~-l~~~~~-  341 (597)
T 3oja_B          293 ------------LNLYGQPIPTLKVL-DLSHNH-----LLHVER-----------NQPQFDRLENLYLDHNS-IVTLKL-  341 (597)
T ss_dssp             ------------EECSSSCCTTCCEE-ECCSSC-----CCCCGG-----------GHHHHTTCSEEECCSSC-CCCCCC-
T ss_pred             ------------CCcccccCCCCcEE-ECCCCC-----CCccCc-----------ccccCCCCCEEECCCCC-CCCcCh-
Confidence                        12222  6788888 888887     445555           45677888888888854 666653 


Q ss_pred             CCCCCccEEEEecCc
Q 007616          555 VLPPSLVYLSIYLCP  569 (596)
Q Consensus       555 ~~~~~L~~L~i~~C~  569 (596)
                      ..+++|+.|+++++|
T Consensus       342 ~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          342 STHHTLKNLTLSHND  356 (597)
T ss_dssp             CTTCCCSEEECCSSC
T ss_pred             hhcCCCCEEEeeCCC
Confidence            346788888888764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=4.4e-21  Score=206.65  Aligned_cols=265  Identities=16%  Similarity=0.148  Sum_probs=182.4

Q ss_pred             cCccc-ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616          158 ELPND-IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-  233 (596)
Q Consensus       158 ~lp~~-~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-  233 (596)
                      .+|+. ++.+++|++|++++|.++.+|+ .++.+++|++|++++| .+..+|+ .++++++|++|++++|. +..+|.. 
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~  142 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGI  142 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHH
Confidence            56655 5889999999999999997764 8999999999999999 5666665 47999999999999998 8888887 


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML  313 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  313 (596)
                      ++++++|++|++.++..... ....+..++.|+ .+.+.+..-..       ..+..+++|+.|+++++..      ..+
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~-~L~L~~N~l~~-------~~~~~l~~L~~L~l~~n~l------~~l  207 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQ-NLQLSSNRLTH-------VDLSLIPSLFHANVSYNLL------STL  207 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCC-EEECTTSCCSB-------CCGGGCTTCSEEECCSSCC------SEE
T ss_pred             hccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCc-EEECcCCCCCC-------cChhhhhhhhhhhcccCcc------ccc
Confidence            58999999999877655331 222344555555 66665532111       1245567788888876642      233


Q ss_pred             CCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616          314 KPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP  393 (596)
Q Consensus       314 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~  393 (596)
                      ..+++|+.|++++|....++..+    .++|+.|++++|.. +..+.++.+++|+.|++++|......+..+..      
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------  276 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------  276 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------
T ss_pred             cCCchhheeeccCCccccccccc----CCCCCEEECCCCCC-CCChhhccCCCCCEEECCCCccCCCCHHHhcC------
Confidence            45567888888888877666443    35788888888874 34567788888888888887655544544443      


Q ss_pred             CCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616          394 FPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       394 ~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~  463 (596)
                      +++|+.|+++++. +..+.            .....+++|+.|++++|.  .++..+..+++|++|++++|.
T Consensus       277 l~~L~~L~Ls~N~-l~~l~------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          277 MQRLERLYISNNR-LVALN------------LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CSSCCEEECTTSC-CCEEE------------CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ccCCCEEECCCCC-CCCCC------------cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence            7888888887731 11110            111236667777776664  233444456666666666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=3e-21  Score=191.49  Aligned_cols=226  Identities=21%  Similarity=0.312  Sum_probs=132.4

Q ss_pred             cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCc
Q 007616          166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK  245 (596)
Q Consensus       166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~  245 (596)
                      ..++++|++++|.++.+|..++.+++|++|++++| .+..+|..++++++|++|++++|. +..+|..++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            46788888888888888888888888888888888 566888888888888888888887 6688888888888888887


Q ss_pred             EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616          246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR  325 (596)
Q Consensus       246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  325 (596)
                      .++...... ...+..       ..                                      ....+..+++|+.|+++
T Consensus       158 ~~n~~~~~~-p~~~~~-------~~--------------------------------------~~~~~~~l~~L~~L~L~  191 (328)
T 4fcg_A          158 RACPELTEL-PEPLAS-------TD--------------------------------------ASGEHQGLVNLQSLRLE  191 (328)
T ss_dssp             EEETTCCCC-CSCSEE-------EC---------------------------------------CCCEEESTTCCEEEEE
T ss_pred             CCCCCcccc-ChhHhh-------cc--------------------------------------chhhhccCCCCCEEECc
Confidence            765432210 000000       00                                      00012223455555555


Q ss_pred             ccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616          326 GYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM  405 (596)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  405 (596)
                      +|....+|.++.  .+++|++|++++|...+..+.++.+++|+.|++++|...+.++..+..      +++|+.|+++++
T Consensus       192 ~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~~L~~L~L~~n  263 (328)
T 4fcg_A          192 WTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RAPLKRLILKDC  263 (328)
T ss_dssp             EECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CCCCCEEECTTC
T ss_pred             CCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------CCCCCEEECCCC
Confidence            555555555444  455555555555553322224555555555555555555544443332      555555555543


Q ss_pred             ccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeeccC---hhccCCCCCCcceEEecCC
Q 007616          406 QEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCEQ---LLVSYTALPPLCELEIDGF  462 (596)
Q Consensus       406 ~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~l~~c  462 (596)
                      ....               .+|   ..+++|+.|++++|..   ++..+..+++|+.+++..+
T Consensus       264 ~~~~---------------~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          264 SNLL---------------TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTCC---------------BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             Cchh---------------hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            3222               222   1355566666666553   3455666677777666543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.86  E-value=7.7e-21  Score=203.63  Aligned_cols=358  Identities=19%  Similarity=0.160  Sum_probs=237.0

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccC--CcccC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF--PDIGN  212 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--~~i~~  212 (596)
                      .+++.+.+..+.+..        ..|..|+.+++|++|++++|.++.+|..  .+++|++|++++| .+..+|  ..+++
T Consensus        76 ~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~  144 (562)
T 3a79_B           76 SELRVLRLSHNRIRS--------LDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGN  144 (562)
T ss_dssp             TTCCEEECCSCCCCE--------ECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGG
T ss_pred             CCccEEECCCCCCCc--------CCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcc
Confidence            456777776665553        3467799999999999999999999987  8999999999999 676654  68999


Q ss_pred             CCccceeecCCCCccccccccccCCccc--CCCCcEEecc--CC--CCCchhcc-----------------------chh
Q 007616          213 LVNLRHLKDSHSNLLEEMPLRIGKLTSL--RTLAKFVVGK--GN--CSGLKELR-----------------------SLM  263 (596)
Q Consensus       213 L~~L~~L~l~~~~~l~~lp~~l~~l~~L--~~L~~~~~~~--~~--~~~l~~l~-----------------------~L~  263 (596)
                      +++|++|++++|. +..  ..+..+++|  ++|++..+..  ..  ...+..+.                       .+.
T Consensus       145 l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~  221 (562)
T 3a79_B          145 LTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG  221 (562)
T ss_dssp             CTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred             cCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccc
Confidence            9999999999998 544  235556666  8888877655  21  11122111                       233


Q ss_pred             hccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---hhhhccCCCCCccEEEEeccCCC-CCCCCCCC-
Q 007616          264 HLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---CVFEMLKPHYGLKELKVRGYGGT-KFPAWLGQ-  338 (596)
Q Consensus       264 ~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-  338 (596)
                      .|+ .+.+................+.++++|+.+++..+.....   ..+..+ ..++|+.|++++|... .+|.++.. 
T Consensus       222 ~L~-~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~  299 (562)
T 3a79_B          222 HLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTY  299 (562)
T ss_dssp             EEE-EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCC
T ss_pred             eEE-EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhc
Confidence            333 3444331100011122333466777777777765432111   111111 2347888888888754 56665411 


Q ss_pred             --CCC--------------------------CCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          339 --SSF--------------------------ENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       339 --~~~--------------------------~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                        ..+                          .+|+.|++++|.. ..++..+.+++|++|++++|...+.++..+..   
T Consensus       300 ~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---  375 (562)
T 3a79_B          300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST---  375 (562)
T ss_dssp             CSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS---
T ss_pred             ccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhhcc---
Confidence              022                          2366666666653 22223368899999999998644434443333   


Q ss_pred             CCCCCCcceeecccCccccccceeEEecCCCCCC--CCC---CCCCCCCEEEEeeccC---hhc-cCCCCCCcceEEecC
Q 007616          391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKG--RLP---QRFSSLERIVITSCEQ---LLV-SYTALPPLCELEIDG  461 (596)
Q Consensus       391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~--~~p---~~l~~L~~L~l~~c~~---l~~-~~~~l~~L~~L~l~~  461 (596)
                         +++|+.|++++.               ++++  .+|   ..+++|+.|++++|.-   ++. .+..+++|++|++++
T Consensus       376 ---l~~L~~L~L~~N---------------~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          376 ---LKRLQTLILQRN---------------GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             ---CSSCCEEECCSS---------------CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             ---cCCCCEEECCCC---------------CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence               899999999873               2231  111   3689999999999873   332 467789999999999


Q ss_pred             CcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeee
Q 007616          462 FSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLE  541 (596)
Q Consensus       462 c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~  541 (596)
                      |...       +              .+|..+.++|+.| ++++|.     ++.+|.           .+..+++|++|+
T Consensus       438 n~l~-------~--------------~~~~~l~~~L~~L-~L~~N~-----l~~ip~-----------~~~~l~~L~~L~  479 (562)
T 3a79_B          438 NMLT-------G--------------SVFRCLPPKVKVL-DLHNNR-----IMSIPK-----------DVTHLQALQELN  479 (562)
T ss_dssp             SCCC-------G--------------GGGSSCCTTCSEE-ECCSSC-----CCCCCT-----------TTTSSCCCSEEE
T ss_pred             CCCC-------c--------------chhhhhcCcCCEE-ECCCCc-----CcccCh-----------hhcCCCCCCEEE
Confidence            8721       1              1222223689999 999996     667766           466899999999


Q ss_pred             cCCCCCCccCCCCC--CCCCccEEEEecCc
Q 007616          542 LPRCPVLRSFPENV--LPPSLVYLSIYLCP  569 (596)
Q Consensus       542 l~~c~~l~~lp~~~--~~~~L~~L~i~~C~  569 (596)
                      +++ ++++.+|...  .+++|+.|+++++|
T Consensus       480 L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          480 VAS-NQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence            999 4688999853  37899999999865

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=6.6e-21  Score=189.05  Aligned_cols=198  Identities=21%  Similarity=0.299  Sum_probs=138.2

Q ss_pred             CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616          134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL  213 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L  213 (596)
                      ..+++.+.+..+.+.         .+|..++++++|++|++++|.++.+|..++.+++|++|++++| .+..+|..++++
T Consensus        80 ~~~l~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP---------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS---------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGC
T ss_pred             ccceeEEEccCCCch---------hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcC
Confidence            356778888776554         6888999999999999999999999999999999999999999 777999999999


Q ss_pred             CccceeecCCCCccccccccccC---------CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHH
Q 007616          214 VNLRHLKDSHSNLLEEMPLRIGK---------LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAK  284 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~l~~---------l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~  284 (596)
                      ++|++|++++|...+.+|..++.         +++|++|++.++...                                 
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~---------------------------------  196 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR---------------------------------  196 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC---------------------------------
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC---------------------------------
Confidence            99999999998878899987765         555555555444321                                 


Q ss_pred             HHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCC
Q 007616          285 EAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGH  363 (596)
Q Consensus       285 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~  363 (596)
                                             ..+..+..+++|+.|++++|....+|..+.  .+++|++|++++|...+.+| .++.
T Consensus       197 -----------------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          197 -----------------------SLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             -----------------------CCCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             -----------------------cchHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcC
Confidence                                   111223334455556666655555555444  45566666666665555555 3555


Q ss_pred             CCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616          364 LPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM  405 (596)
Q Consensus       364 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  405 (596)
                      +++|+.|++++|...+.++..+..      +++|+.|+++++
T Consensus       252 l~~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~L~~n  287 (328)
T 4fcg_A          252 RAPLKRLILKDCSNLLTLPLDIHR------LTQLEKLDLRGC  287 (328)
T ss_dssp             CCCCCEEECTTCTTCCBCCTTGGG------CTTCCEEECTTC
T ss_pred             CCCCCEEECCCCCchhhcchhhhc------CCCCCEEeCCCC
Confidence            666666666666555555544433      556665555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=1.5e-21  Score=192.55  Aligned_cols=261  Identities=14%  Similarity=0.097  Sum_probs=183.5

Q ss_pred             ccCCCCccccC--CceeEEEEecccccccccccccccCcccccccCCCcEEeecC-CCcc-ccccccccCCcCcEEEccc
Q 007616          124 TWDGNNERRFS--RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSH-TAIE-VLSESVSTLYNLQTLILEY  199 (596)
Q Consensus       124 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~-~~i~-~lp~~i~~l~~L~~L~L~~  199 (596)
                      .|.|+.+....  .+++.+.+..+...+..      .+|..++.+++|++|++++ |.+. .+|..++.+++|++|++++
T Consensus        37 ~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~------~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~  110 (313)
T 1ogq_A           37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPY------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH  110 (313)
T ss_dssp             CSTTEEECCSSSCCCEEEEEEECCCCSSCE------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE
T ss_pred             CCcceEeCCCCCCceEEEEECCCCCccCCc------ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC
Confidence            37777665443  67888888877654311      4788999999999999995 8887 7899999999999999999


Q ss_pred             cccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchh-hccceEEEcCcCCCC
Q 007616          200 CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLM-HLQEKLTISGLENVN  278 (596)
Q Consensus       200 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~-~L~~~l~i~~~~~~~  278 (596)
                      |.....+|..++++++|++|++++|...+.+|..++++++|++|++.++.... .....+..+. .|+ .+.+.+..   
T Consensus       111 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~-~L~L~~N~---  185 (313)
T 1ogq_A          111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFT-SMTISRNR---  185 (313)
T ss_dssp             ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCC-EEECCSSE---
T ss_pred             CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCc-EEECcCCe---
Confidence            94445889999999999999999999444788899999999999987665421 1222333343 444 45554321   


Q ss_pred             CHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCC
Q 007616          279 DAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTL  358 (596)
Q Consensus       279 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l  358 (596)
                       .....+..+..++ |+.|+++.+. .....+..+..+++|+.|++++|.....+..+.  .+++|++|++++|...+.+
T Consensus       186 -l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~  260 (313)
T 1ogq_A          186 -LTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             -EEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECC
T ss_pred             -eeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcC
Confidence             1111222344454 8888887765 333455666777888888888887665444444  5778888888888766566


Q ss_pred             C-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCcc
Q 007616          359 P-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQE  407 (596)
Q Consensus       359 ~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  407 (596)
                      | .++.+++|+.|++++|...+.++..       ..+++|+.+++.+.+.
T Consensus       261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSSSE
T ss_pred             ChHHhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCCCC
Confidence            6 5777888888888887655555543       1267777777777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.82  E-value=1.4e-19  Score=197.17  Aligned_cols=140  Identities=18%  Similarity=0.205  Sum_probs=104.1

Q ss_pred             cccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      +.++|..+.  .++++|||++|.|+.+| .+|.++++|++|+|++| .+..+|+ .|+++++|++|++++|. ++.+|.+
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~  118 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG  118 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence            447777653  47999999999999987 47999999999999999 7888875 58999999999999998 8888876


Q ss_pred             -ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCC
Q 007616          234 -IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK  304 (596)
Q Consensus       234 -l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  304 (596)
                       ++++++|++|++.++...... -..+.+++.|+ .+.+.+..-..   ...+..+..+++|+.|+++.+..
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~-~L~Ls~N~l~~---~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLK-ELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCC-EEECCSSCCCC---CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             HhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccC-eeccccCcccc---CCCchhhccchhhhhhcccCccc
Confidence             899999999998766554321 11244555565 66665432111   01123466788899999887753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.82  E-value=2.3e-19  Score=178.68  Aligned_cols=179  Identities=20%  Similarity=0.220  Sum_probs=116.1

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      .+|..+.  ++|++|++++|.++.++. .++.+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|..+.
T Consensus        45 ~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~  120 (330)
T 1xku_A           45 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP  120 (330)
T ss_dssp             SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC
T ss_pred             ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc
Confidence            4565543  578888888888887765 6788888888888888 55555 6778888888888888888 777877654


Q ss_pred             CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcc-hhhhhccC
Q 007616          236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQ-TCVFEMLK  314 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~  314 (596)
                        ++|++|++.++...                              ......+.++++|+.|+++.+.... ......+.
T Consensus       121 --~~L~~L~l~~n~l~------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  168 (330)
T 1xku_A          121 --KTLQELRVHENEIT------------------------------KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ  168 (330)
T ss_dssp             --TTCCEEECCSSCCC------------------------------BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG
T ss_pred             --ccccEEECCCCccc------------------------------ccCHhHhcCCccccEEECCCCcCCccCcChhhcc
Confidence              56777665332211                              0111224556667777776654321 12234455


Q ss_pred             CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      .+++|+.|++++|....+|..+    +++|++|++++|...+..+ .++.+++|+.|++++|.
T Consensus       169 ~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  227 (330)
T 1xku_A          169 GMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS  227 (330)
T ss_dssp             GCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred             CCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence            5677777777777776666543    2567777777776333323 46666777777776654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=8.2e-19  Score=174.71  Aligned_cols=268  Identities=15%  Similarity=0.130  Sum_probs=130.7

Q ss_pred             CCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          167 KHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      ++|++|++++|.++.++ ..++.+++|++|++++| .+..+ |..++++++|++|++++|. +..+|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc--ccCCEEE
Confidence            34555555555555442 24555555555555555 33333 3445555555555555554 445554433  4455554


Q ss_pred             cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616          245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV  324 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  324 (596)
                      +.++..... ....+..+++|+ .+.+.+..-..  .......+..+ +|+.|+++.+....  .+..+  .++|+.|++
T Consensus       130 l~~n~i~~~-~~~~~~~l~~L~-~L~l~~n~l~~--~~~~~~~~~~l-~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l  200 (332)
T 2ft3_A          130 IHDNRIRKV-PKGVFSGLRNMN-CIEMGGNPLEN--SGFEPGAFDGL-KLNYLRISEAKLTG--IPKDL--PETLNELHL  200 (332)
T ss_dssp             CCSSCCCCC-CSGGGSSCSSCC-EEECCSCCCBG--GGSCTTSSCSC-CCSCCBCCSSBCSS--CCSSS--CSSCSCCBC
T ss_pred             CCCCccCcc-CHhHhCCCccCC-EEECCCCcccc--CCCCcccccCC-ccCEEECcCCCCCc--cCccc--cCCCCEEEC
Confidence            433332211 001122222222 23322211000  00111123334 66666666654221  11111  257777777


Q ss_pred             eccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeec
Q 007616          325 RGYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCF  402 (596)
Q Consensus       325 ~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  402 (596)
                      ++|....++ ..+.  .+++|+.|++++|...+..+ .++.+++|+.|++++|. +..++..+..      +++|+.|++
T Consensus       201 ~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~------l~~L~~L~l  271 (332)
T 2ft3_A          201 DHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPD------LKLLQVVYL  271 (332)
T ss_dssp             CSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGG------CTTCCEEEC
T ss_pred             CCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhc------CccCCEEEC
Confidence            777766654 3344  56777777777776444333 46677778888887763 4455554433      677777777


Q ss_pred             ccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-----hccCCCCCCcceEEecCCc
Q 007616          403 EDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-----LVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       403 ~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-----~~~~~~l~~L~~L~l~~c~  463 (596)
                      ++.. +..+.      ...+.+..+ ..+++|+.|++.+++..     +..+..+++|+.+++++|.
T Consensus       272 ~~N~-l~~~~------~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          272 HTNN-ITKVG------VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSC-CCBCC------TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CCCC-CCccC------hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            7631 22111      000000000 12567788888877632     4556678888888887764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.79  E-value=8.9e-19  Score=174.37  Aligned_cols=268  Identities=16%  Similarity=0.151  Sum_probs=168.9

Q ss_pred             cCCceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i  210 (596)
                      .+..++.+.+..+.+.         .+| ..|+.+++|++|++++|.++.+ |..++.+++|++|++++| .++.+|..+
T Consensus        50 ~~~~l~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~  119 (330)
T 1xku_A           50 LPPDTALLDLQNNKIT---------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKM  119 (330)
T ss_dssp             CCTTCCEEECCSSCCC---------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSC
T ss_pred             CCCCCeEEECCCCcCC---------EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhh
Confidence            3456777777666554         344 4689999999999999999977 788999999999999999 788999877


Q ss_pred             cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCC-CCchhccchhhccceEEEcCcCCCCCHhhHHHHhc
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNC-SGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL  288 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~-~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l  288 (596)
                      .  ++|++|++++|. +..++.. ++++++|++|++.++..... .....                             +
T Consensus       120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------------------~  167 (330)
T 1xku_A          120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-----------------------------F  167 (330)
T ss_dssp             C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-----------------------------G
T ss_pred             c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhh-----------------------------c
Confidence            6  799999999998 7776654 88999999998765543211 11112                             3


Q ss_pred             CCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCc
Q 007616          289 NGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPS  366 (596)
Q Consensus       289 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~  366 (596)
                      ..+++|+.|+++.+....  .+..+  .++|+.|++++|....+ |..+.  .+++|+.|++++|...+..+ .++.+++
T Consensus       168 ~~l~~L~~L~l~~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  241 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPH  241 (330)
T ss_dssp             GGCTTCCEEECCSSCCCS--CCSSC--CTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTT
T ss_pred             cCCCCcCEEECCCCcccc--CCccc--cccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCC
Confidence            344455555555443211  11111  25677777777765544 33444  56677777777776433333 4666777


Q ss_pred             cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-
Q 007616          367 LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-  444 (596)
Q Consensus       367 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-  444 (596)
                      |+.|++++|. +..++..+..      +++|+.|++++.. ++.+.      ...+.+..+ ...+.|+.|++.+++-. 
T Consensus       242 L~~L~L~~N~-l~~lp~~l~~------l~~L~~L~l~~N~-i~~~~------~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          242 LRELHLNNNK-LVKVPGGLAD------HKYIQVVYLHNNN-ISAIG------SNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CCEEECCSSC-CSSCCTTTTT------CSSCCEEECCSSC-CCCCC------TTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCEEECCCCc-CccCChhhcc------CCCcCEEECCCCc-CCccC------hhhcCCcccccccccccceEeecCcccc
Confidence            7777777763 4444443322      6677777776531 11110      000000000 12467788888877632 


Q ss_pred             ----hccCCCCCCcceEEecCC
Q 007616          445 ----LVSYTALPPLCELEIDGF  462 (596)
Q Consensus       445 ----~~~~~~l~~L~~L~l~~c  462 (596)
                          +..+..+++++.+++++|
T Consensus       308 ~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          308 WEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGSCGGGGTTCCCGGGEEC---
T ss_pred             cccCccccccccceeEEEeccc
Confidence                456777888888888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.79  E-value=1.5e-20  Score=185.35  Aligned_cols=243  Identities=14%  Similarity=0.125  Sum_probs=166.3

Q ss_pred             CCCcEEeecCCCcc---ccccccccCCcCcEEEccc-cccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          167 KHLRYLDFSHTAIE---VLSESVSTLYNLQTLILEY-CYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       167 ~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      .+++.|+++++.++   .+|..++.+++|++|++++ |.....+|..++++++|++|++++|...+.+|..++++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57999999999998   5899999999999999995 6555689999999999999999999944588999999999999


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC-CccE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY-GLKE  321 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~  321 (596)
                      |++.++.... ...                             ..+..+++|+.|+++.+. .....+..+..++ +|+.
T Consensus       130 L~Ls~N~l~~-~~p-----------------------------~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~  178 (313)
T 1ogq_A          130 LDFSYNALSG-TLP-----------------------------PSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTS  178 (313)
T ss_dssp             EECCSSEEES-CCC-----------------------------GGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCE
T ss_pred             EeCCCCccCC-cCC-----------------------------hHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcE
Confidence            9876554321 111                             124445566666666554 2333444555555 7777


Q ss_pred             EEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcce
Q 007616          322 LKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLET  399 (596)
Q Consensus       322 L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~  399 (596)
                      |++++|... .+|..+.  .++ |+.|++++|...+..+ .++.+++|+.|++++|.....++. +      ..+++|++
T Consensus       179 L~L~~N~l~~~~~~~~~--~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~------~~l~~L~~  248 (313)
T 1ogq_A          179 MTISRNRLTGKIPPTFA--NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V------GLSKNLNG  248 (313)
T ss_dssp             EECCSSEEEEECCGGGG--GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C------CCCTTCCE
T ss_pred             EECcCCeeeccCChHHh--CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c------cccCCCCE
Confidence            777777654 4555554  344 7788887776544444 467777888888877653322221 2      22677777


Q ss_pred             eecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccCh--hccCCCCCCcceEEecCCccc
Q 007616          400 LCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQL--LVSYTALPPLCELEIDGFSEL  465 (596)
Q Consensus       400 L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l--~~~~~~l~~L~~L~l~~c~~l  465 (596)
                      |+++++               ++.+.+|.   .+++|+.|++++|.--  ......+++|+.|++++|+.+
T Consensus       249 L~Ls~N---------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          249 LDLRNN---------------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EECCSS---------------CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             EECcCC---------------cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence            777763               33334442   4677888888877521  122356788888888888744

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=3.6e-18  Score=182.40  Aligned_cols=219  Identities=19%  Similarity=0.098  Sum_probs=117.9

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+|..+.  ++|++|++++|.++.+|.   .+++|++|++++| .++.+|.   .+++|++|++++|. +..+|.   .+
T Consensus        54 ~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~---~l  120 (622)
T 3g06_A           54 TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP-LTHLPA---LP  120 (622)
T ss_dssp             CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CCCCCC---CC
T ss_pred             ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc-CCCCCC---CC
Confidence            4565554  678888888887777776   4677888888887 6777776   56778888888777 666766   44


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY  317 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (596)
                      ++|++|++.++....      ++                            ..+++|+.|+++.+.....  +   ..++
T Consensus       121 ~~L~~L~L~~N~l~~------lp----------------------------~~l~~L~~L~Ls~N~l~~l--~---~~~~  161 (622)
T 3g06_A          121 SGLCKLWIFGNQLTS------LP----------------------------VLPPGLQELSVSDNQLASL--P---ALPS  161 (622)
T ss_dssp             TTCCEEECCSSCCSC------CC----------------------------CCCTTCCEEECCSSCCSCC--C---CCCT
T ss_pred             CCcCEEECCCCCCCc------CC----------------------------CCCCCCCEEECcCCcCCCc--C---CccC
Confidence            566666543322110      00                            0113455555554432110  0   1234


Q ss_pred             CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCc
Q 007616          318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSL  397 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L  397 (596)
                      +|+.|++++|....+|.     .+++|+.|++++|. ++.+|.  .+++|+.|++++|. +..++.         .+++|
T Consensus       162 ~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N~-l~~l~~---------~~~~L  223 (622)
T 3g06_A          162 ELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQ-LASLPT--LPSELYKLWAYNNR-LTSLPA---------LPSGL  223 (622)
T ss_dssp             TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSSCCC---------CCTTC
T ss_pred             CCCEEECCCCCCCCCcc-----cCCCCcEEECCCCC-CCCCCC--ccchhhEEECcCCc-ccccCC---------CCCCC
Confidence            56666666666655551     34566666666655 333432  23566666666543 222221         13555


Q ss_pred             ceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCc
Q 007616          398 ETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       398 ~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~  463 (596)
                      +.|++++               ++++ .+|..+++|+.|++++|. +......+++|+.|++++|.
T Consensus       224 ~~L~Ls~---------------N~L~-~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~  272 (622)
T 3g06_A          224 KELIVSG---------------NRLT-SLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ  272 (622)
T ss_dssp             CEEECCS---------------SCCS-CCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CEEEccC---------------CccC-cCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCC
Confidence            5555554               2333 244455566666665553 21111234555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=1.4e-18  Score=173.12  Aligned_cols=287  Identities=11%  Similarity=0.083  Sum_probs=164.2

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccccc-cccccCCcccCCCC
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLA  244 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~  244 (596)
                      .++++++++++.++.+|..+.  ++|++|++++| .+..+| ..++++++|++|++++|. +..+ |..++++++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence            479999999999999998774  79999999999 677665 579999999999999999 6665 66799999999999


Q ss_pred             cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616          245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV  324 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  324 (596)
                      +.++.......  .+                               .++|+.|+++.+.. .......+..+++|+.|++
T Consensus       109 L~~n~l~~l~~--~~-------------------------------~~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A          109 ISKNHLVEIPP--NL-------------------------------PSSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             CCSSCCCSCCS--SC-------------------------------CTTCCEEECCSSCC-CCCCSGGGSSCSSCCEEEC
T ss_pred             CCCCcCCccCc--cc-------------------------------cccCCEEECCCCcc-CccCHhHhCCCccCCEEEC
Confidence            76554332100  00                               03444555544432 1111223444556666666


Q ss_pred             eccCCC---CCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeC-ccccCCCCCCCCCCccee
Q 007616          325 RGYGGT---KFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVG-LEFCGNYCSEPFPSLETL  400 (596)
Q Consensus       325 ~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~~~~L~~L  400 (596)
                      ++|...   ..+..+.  .+ +|+.|++++|. ++.+|.. -.++|+.|++++|. ++.++ ..+.      .+++|+.|
T Consensus       155 ~~n~l~~~~~~~~~~~--~l-~L~~L~l~~n~-l~~l~~~-~~~~L~~L~l~~n~-i~~~~~~~l~------~l~~L~~L  222 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFD--GL-KLNYLRISEAK-LTGIPKD-LPETLNELHLDHNK-IQAIELEDLL------RYSKLYRL  222 (332)
T ss_dssp             CSCCCBGGGSCTTSSC--SC-CCSCCBCCSSB-CSSCCSS-SCSSCSCCBCCSSC-CCCCCTTSST------TCTTCSCC
T ss_pred             CCCccccCCCCccccc--CC-ccCEEECcCCC-CCccCcc-ccCCCCEEECCCCc-CCccCHHHhc------CCCCCCEE
Confidence            665543   2222232  23 56666666655 2333321 12566666666653 22222 2221      25566666


Q ss_pred             ecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCcccceeeEecccc
Q 007616          401 CFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFSELFLILQIQGWR  475 (596)
Q Consensus       401 ~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~  475 (596)
                      ++++.               ++.+..+   ..+++|+.|++++|.  .++..+..+++|++|++++|...  .+....  
T Consensus       223 ~L~~N---------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~--~~~~~~--  283 (332)
T 2ft3_A          223 GLGHN---------------QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KVGVND--  283 (332)
T ss_dssp             BCCSS---------------CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC--BCCTTS--
T ss_pred             ECCCC---------------cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC--ccChhH--
Confidence            65552               2221111   245667777776664  33445666788888888887621  110000  


Q ss_pred             cccccCCcccccccccccchhhhccccccccccccccc-eecccCCCCCCCCCCCCCCCCCCCCeeecCCCC
Q 007616          476 SRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLL-VYIAEGGEFPQLESLSFVGNLTSLERLELPRCP  546 (596)
Q Consensus       476 ~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l-~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~  546 (596)
                           |..    ..+....++|+.| ++.+++.    . ..++..          .+..+++|+.|++++|.
T Consensus       284 -----~~~----~~~~~~~~~l~~L-~l~~N~~----~~~~~~~~----------~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          284 -----FCP----VGFGVKRAYYNGI-SLFNNPV----PYWEVQPA----------TFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             -----SSC----SSCCSSSCCBSEE-ECCSSSS----CGGGSCGG----------GGTTBCCSTTEEC----
T ss_pred             -----ccc----cccccccccccce-EeecCcc----cccccCcc----------cccccchhhhhhccccc
Confidence                 000    0000114667788 8888874    2 022221          46678889999998865

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=3e-19  Score=175.74  Aligned_cols=201  Identities=19%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             CCCcEEeecCCCccccccc-cccCCcCcEEEcccccccccc---CCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          167 KHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKL---FPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      ++|++|++++|.++.+|.. ++.+++|++|++++| .+..+   |..+..+++|++|++++|. +..+|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCE
Confidence            4566666666666665543 456666666666666 33322   3445556666666666665 5556655666666666


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++..........+..++.|+ .+.+.+...    .......+..+++|+.|+++++.......+..+..+++|+.|
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLI-YLDISHTHT----RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCC-EEECTTSCC----EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             EECCCCcccccccchhhhhccCCC-EEECCCCcC----CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            654433222211111122222222 222221110    000111234445555555555432221233444455555555


Q ss_pred             EEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          323 KVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|....+ |.++.  .+++|+.|++++|...+..+ .++.+++|+.|++++|.
T Consensus       181 ~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             ECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             ECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence            5555554443 23333  45555555555555322212 34455555555555553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.78  E-value=8.7e-19  Score=176.15  Aligned_cols=83  Identities=25%  Similarity=0.374  Sum_probs=49.4

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++|++|++++|.++.+|. .++.+++|++|++++| .+..+ |..++++++|++|++++|. ++.+|.. +
T Consensus        45 ~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  120 (353)
T 2z80_A           45 SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF  120 (353)
T ss_dssp             SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH
T ss_pred             ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh
Confidence            4555443  366666777666666554 5666666777776666 44444 3446666666666666666 5555544 4


Q ss_pred             cCCcccCCCC
Q 007616          235 GKLTSLRTLA  244 (596)
Q Consensus       235 ~~l~~L~~L~  244 (596)
                      +++++|++|+
T Consensus       121 ~~l~~L~~L~  130 (353)
T 2z80_A          121 KPLSSLTFLN  130 (353)
T ss_dssp             TTCTTCSEEE
T ss_pred             CCCccCCEEE
Confidence            5555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=2e-17  Score=176.59  Aligned_cols=257  Identities=22%  Similarity=0.186  Sum_probs=172.5

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF  246 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~  246 (596)
                      .++++|+++++.++.+|..+.  ++|++|++++| .++.+|.   .+++|++|++++|. ++.+|.   .+++|++|++.
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECc
Confidence            469999999999999998776  89999999999 7888987   67999999999998 888887   67888888765


Q ss_pred             EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616          247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG  326 (596)
Q Consensus       247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  326 (596)
                      ++....      ++.                            .+++|+.|+++.+....  .+.   .+++|+.|++++
T Consensus       110 ~N~l~~------l~~----------------------------~l~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~  150 (622)
T 3g06_A          110 SNPLTH------LPA----------------------------LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSD  150 (622)
T ss_dssp             SCCCCC------CCC----------------------------CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCS
T ss_pred             CCcCCC------CCC----------------------------CCCCcCEEECCCCCCCc--CCC---CCCCCCEEECcC
Confidence            443221      110                            22456666665553211  111   236788888888


Q ss_pred             cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616          327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ  406 (596)
Q Consensus       327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (596)
                      |....+|.     .+++|+.|++++|. ++.+|  ..+++|+.|++++|. +..++.         .+++|+.|++++  
T Consensus       151 N~l~~l~~-----~~~~L~~L~L~~N~-l~~l~--~~~~~L~~L~Ls~N~-l~~l~~---------~~~~L~~L~L~~--  210 (622)
T 3g06_A          151 NQLASLPA-----LPSELCKLWAYNNQ-LTSLP--MLPSGLQELSVSDNQ-LASLPT---------LPSELYKLWAYN--  210 (622)
T ss_dssp             SCCSCCCC-----CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCSSC-CSCCCC---------CCTTCCEEECCS--
T ss_pred             CcCCCcCC-----ccCCCCEEECCCCC-CCCCc--ccCCCCcEEECCCCC-CCCCCC---------ccchhhEEECcC--
Confidence            87776664     34578888888776 44455  456788888887764 333332         146677777666  


Q ss_pred             cccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccChhccCCCCCCcceEEecCCcccceeeEecccccccccCCcccc
Q 007616          407 EWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIR  486 (596)
Q Consensus       407 ~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~  486 (596)
                                   +.++ .+|..+++|+.|++++|. +......+++|++|++++|...                     
T Consensus       211 -------------N~l~-~l~~~~~~L~~L~Ls~N~-L~~lp~~l~~L~~L~Ls~N~L~---------------------  254 (622)
T 3g06_A          211 -------------NRLT-SLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGNRLT---------------------  254 (622)
T ss_dssp             -------------SCCS-SCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS---------------------
T ss_pred             -------------Cccc-ccCCCCCCCCEEEccCCc-cCcCCCCCCcCcEEECCCCCCC---------------------
Confidence                         2334 456566778888887763 2222245677777777777511                     


Q ss_pred             cccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCC
Q 007616          487 IPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPV  547 (596)
Q Consensus       487 l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~  547 (596)
                       .+|. .+++|+.| ++++|.     ++.+|.           .+.++++|+.|++++|+-
T Consensus       255 -~lp~-~~~~L~~L-~Ls~N~-----L~~lp~-----------~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          255 -SLPM-LPSGLLSL-SVYRNQ-----LTRLPE-----------SLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             -CCCC-CCTTCCEE-ECCSSC-----CCSCCG-----------GGGGSCTTCEEECCSCCC
T ss_pred             -cCCc-ccccCcEE-eCCCCC-----CCcCCH-----------HHhhccccCEEEecCCCC
Confidence             1222 25677777 777776     445554           466777788888887653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.77  E-value=1.7e-18  Score=174.11  Aligned_cols=197  Identities=16%  Similarity=0.097  Sum_probs=109.5

Q ss_pred             cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc-ccccCCcccCCC
Q 007616          166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP-LRIGKLTSLRTL  243 (596)
Q Consensus       166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~l~~l~~L~~L  243 (596)
                      ++...+.+.+++.++.+|..+.  ++|++|++++| .++.+|. .++++++|++|++++|. +..++ ..++++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEE
Confidence            3344456666677777766554  46777777777 5555554 56777777777777776 55543 346677777777


Q ss_pred             CcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEE
Q 007616          244 AKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELK  323 (596)
Q Consensus       244 ~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  323 (596)
                      ++.++....      ++                        ...+..+++|+.|+++.+..........+..+++|+.|+
T Consensus       106 ~Ls~n~l~~------~~------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~  155 (353)
T 2z80_A          106 DLSYNYLSN------LS------------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR  155 (353)
T ss_dssp             ECCSSCCSS------CC------------------------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             ECCCCcCCc------CC------------------------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence            654332211      00                        011344555666666555422111112355566777777


Q ss_pred             EeccC-CCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCccee
Q 007616          324 VRGYG-GTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETL  400 (596)
Q Consensus       324 l~~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L  400 (596)
                      +++|. ...++ ..+.  .+++|++|++++|...+..+ .++.+++|+.|++++|. ++.++..+.+     .+++|+.|
T Consensus       156 l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~-----~~~~L~~L  227 (353)
T 2z80_A          156 VGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVD-----VTSSVECL  227 (353)
T ss_dssp             EEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHH-----HTTTEEEE
T ss_pred             CCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhh-----hcccccEE
Confidence            77763 44432 3333  56777777777776444433 56677777777777764 2333322211     15566666


Q ss_pred             eccc
Q 007616          401 CFED  404 (596)
Q Consensus       401 ~l~~  404 (596)
                      ++++
T Consensus       228 ~L~~  231 (353)
T 2z80_A          228 ELRD  231 (353)
T ss_dssp             EEES
T ss_pred             ECCC
Confidence            6655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.75  E-value=2e-17  Score=172.05  Aligned_cols=181  Identities=20%  Similarity=0.213  Sum_probs=111.9

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  +++++|+|++|.++.+ |..++.+++|++|++++| .+..++ ..++++++|++|++++|. +..+|.. +
T Consensus        68 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  143 (452)
T 3zyi_A           68 EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF  143 (452)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS
T ss_pred             ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhh
Confidence            6676554  6899999999999876 567899999999999999 566555 668899999999999998 7787766 7


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      +.+++|++|++.++....      ++                        ...+..+++|+.|+++.+..........+.
T Consensus       144 ~~l~~L~~L~L~~N~l~~------~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~  193 (452)
T 3zyi_A          144 EYLSKLRELWLRNNPIES------IP------------------------SYAFNRVPSLMRLDLGELKKLEYISEGAFE  193 (452)
T ss_dssp             SSCTTCCEEECCSCCCCE------EC------------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred             cccCCCCEEECCCCCcce------eC------------------------HhHHhcCCcccEEeCCCCCCccccChhhcc
Confidence            888888888865443211      10                        011334445555555443322222222334


Q ss_pred             CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCc
Q 007616          315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGM  375 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~  375 (596)
                      .+++|+.|++++|....+|.. .  .+++|+.|++++|...+..+ .++.+++|+.|++++|
T Consensus       194 ~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  252 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDMPNL-T--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS  252 (452)
T ss_dssp             TCTTCCEEECTTSCCSSCCCC-T--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred             CCCCCCEEECCCCcccccccc-c--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence            455555555555555554431 2  34555555555555333222 3455555555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.75  E-value=2.6e-17  Score=170.46  Aligned_cols=182  Identities=18%  Similarity=0.186  Sum_probs=116.7

Q ss_pred             cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  +++++|+|++|.++.++ ..+..+++|++|++++| .+..++ ..+.++++|++|++++|. ++.+|.+ +
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  132 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF  132 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHh
Confidence            6777654  68999999999998765 67889999999999999 666665 568889999999999998 7787764 8


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      ..+++|++|++.++....      ++                        ...+..+++|+.|+++.+..........+.
T Consensus       133 ~~l~~L~~L~L~~N~i~~------~~------------------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~  182 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIES------IP------------------------SYAFNRIPSLRRLDLGELKRLSYISEGAFE  182 (440)
T ss_dssp             CSCSSCCEEECCSCCCCE------EC------------------------TTTTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred             hccccCceeeCCCCcccc------cC------------------------HHHhhhCcccCEeCCCCCCCcceeCcchhh
Confidence            888888888765443211      10                        011344555555555543322222223344


Q ss_pred             CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      .+++|+.|++++|....+|.. .  .+++|+.|++++|...+..+ .+..+++|+.|++++|.
T Consensus       183 ~l~~L~~L~L~~n~l~~~~~~-~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  242 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLREIPNL-T--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ  242 (440)
T ss_dssp             TCSSCCEEECTTSCCSSCCCC-T--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             cccccCeecCCCCcCcccccc-C--CCcccCEEECCCCccCccChhhhccCccCCEEECCCCc
Confidence            556666666666666555532 2  45666666666665333222 45566666666666643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=1e-20  Score=197.83  Aligned_cols=377  Identities=17%  Similarity=0.120  Sum_probs=222.3

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccccc-cCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLKK-LFP  208 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-lp~  208 (596)
                      .+++.+.+..+.....       .....+..+++|++|++++|.++     .++..+..+++|++|++++| .+.. .+.
T Consensus         3 ~~l~~L~Ls~~~l~~~-------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~   74 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDA-------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVH   74 (461)
T ss_dssp             EEEEEEEEESCCCCHH-------HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHH
T ss_pred             ccceehhhhhcccCch-------hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHH
Confidence            4566677665544321       12233678899999999999988     45777888999999999998 4433 222


Q ss_pred             cc-cCCC----ccceeecCCCCccc-----cccccccCCcccCCCCcEEeccCCCCCchhcc-----chhhccceEEEcC
Q 007616          209 DI-GNLV----NLRHLKDSHSNLLE-----EMPLRIGKLTSLRTLAKFVVGKGNCSGLKELR-----SLMHLQEKLTISG  273 (596)
Q Consensus       209 ~i-~~L~----~L~~L~l~~~~~l~-----~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~-----~L~~L~~~l~i~~  273 (596)
                      .+ ..+.    +|++|++++|. ++     .+|..+.++++|++|++.++.... .....+.     ....|+ .+.+.+
T Consensus        75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~-~L~L~~  151 (461)
T 1z7x_W           75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLE-KLQLEY  151 (461)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCC-EEECTT
T ss_pred             HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcce-EEECCC
Confidence            22 2344    79999999998 55     467778899999999876554321 1111111     123455 666665


Q ss_pred             cCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC-----CCCCccEEEEeccCCCC-----CCCCCCCCCCCC
Q 007616          274 LENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK-----PHYGLKELKVRGYGGTK-----FPAWLGQSSFEN  343 (596)
Q Consensus       274 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~  343 (596)
                      +.-.......+...+..+++|+.|+++++.. .......+.     ..++|+.|++++|....     ++..+.  .+++
T Consensus       152 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~  228 (461)
T 1z7x_W          152 CSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKAS  228 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTT
T ss_pred             CCCCHHHHHHHHHHHhhCCCCCEEECcCCCc-chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH--hCCC
Confidence            4333222334455567778888888887763 222222221     35588888888887654     243333  5678


Q ss_pred             ccEEEEecCCCCCC----C-C-CCCCCCccceeeccCccCceE-----eCccccCCCCCCCCCCcceeecccCccccccc
Q 007616          344 LVVLRFKNCNQCTT----L-P-SVGHLPSLKNLVIKGMAKVKS-----VGLEFCGNYCSEPFPSLETLCFEDMQEWEERI  412 (596)
Q Consensus       344 L~~L~l~~~~~~~~----l-~-~l~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  412 (596)
                      |++|++++|...+.    + + ....+++|+.|++++|. ++.     ++..+..      +++|+.|+++++. +.+..
T Consensus       229 L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~------~~~L~~L~Ls~n~-i~~~~  300 (461)
T 1z7x_W          229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA------KESLKELSLAGNE-LGDEG  300 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH------CTTCCEEECTTCC-CHHHH
T ss_pred             ccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh------CCCcceEECCCCC-CchHH
Confidence            88888888863221    1 1 12357888888888874 333     2222222      6788888887642 11100


Q ss_pred             eeEEecCCCCCCCCCCCCCCCCEEEEeeccC-------hhccCCCCCCcceEEecCCcccceeeEecccccccccCCccc
Q 007616          413 GLSIVRCPKLKGRLPQRFSSLERIVITSCEQ-------LLVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEI  485 (596)
Q Consensus       413 ~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~  485 (596)
                            ...+...+....++|+.|++++|.-       ++..+..+++|++|++++|...-.     +...+...++   
T Consensus       301 ------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-----~~~~l~~~l~---  366 (461)
T 1z7x_W          301 ------ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA-----GVRELCQGLG---  366 (461)
T ss_dssp             ------HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH-----HHHHHHHHHT---
T ss_pred             ------HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc-----cHHHHHHHHc---
Confidence                  0000001122346888888888862       233445678888888888852100     0000000000   


Q ss_pred             ccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccC---------CCCCC
Q 007616          486 RIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSF---------PENVL  556 (596)
Q Consensus       486 ~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~l---------p~~~~  556 (596)
                            ...++|+.| ++++|...+.+...++.           .+..+++|++|++++|+ ++..         |.  .
T Consensus       367 ------~~~~~L~~L-~L~~n~i~~~~~~~l~~-----------~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~--~  425 (461)
T 1z7x_W          367 ------QPGSVLRVL-WLADCDVSDSSCSSLAA-----------TLLANHSLRELDLSNNC-LGDAGILQLVESVRQ--P  425 (461)
T ss_dssp             ------STTCCCCEE-ECTTSCCCHHHHHHHHH-----------HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS--T
T ss_pred             ------CCCCceEEE-ECCCCCCChhhHHHHHH-----------HHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc--C
Confidence                  003578888 99998753333335555           45678899999999964 4432         21  1


Q ss_pred             CCCccEEEEecC
Q 007616          557 PPSLVYLSIYLC  568 (596)
Q Consensus       557 ~~~L~~L~i~~C  568 (596)
                      ..+|+.|.+.++
T Consensus       426 ~~~L~~L~~~~~  437 (461)
T 1z7x_W          426 GCLLEQLVLYDI  437 (461)
T ss_dssp             TCCCCEEECTTC
T ss_pred             Ccchhheeeccc
Confidence            246777777655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=4.3e-19  Score=191.58  Aligned_cols=367  Identities=17%  Similarity=0.144  Sum_probs=172.7

Q ss_pred             ccCCCcEEeecCCCcc-cccccccc-CC-cCcEEEcccccccc--ccCCcccCCCccceeecCCCCcccc----cccccc
Q 007616          165 ELKHLRYLDFSHTAIE-VLSESVST-LY-NLQTLILEYCYRLK--KLFPDIGNLVNLRHLKDSHSNLLEE----MPLRIG  235 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~-~lp~~i~~-l~-~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~----lp~~l~  235 (596)
                      .+++|++|+|++|.++ ..+..++. ++ +|++|++++|..+.  .++..+.++++|++|++++|.....    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            7889999999999877 33455555 34 49999999885332  2333345788999999999973222    223345


Q ss_pred             CCcccCCCCcEEeccCC--CCCch-hccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCc--chhhh
Q 007616          236 KLTSLRTLAKFVVGKGN--CSGLK-ELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKI--QTCVF  310 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~--~~~l~-~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~  310 (596)
                      .+++|++|++..+....  ...+. .+.++++|+ .+.+.++..    .. ....+..+++|+.|.++.....  .....
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~-~L~L~~~~~----~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  263 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV-SVKVGDFEI----LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKY  263 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC-EEECSSCBG----GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc-EEeccCccH----HH-HHHHHhhhhHHHhhcccccccccchHHHH
Confidence            67778887764443321  00111 112233333 444433211    11 1223344455555554421110  01222


Q ss_pred             hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC--CC-CCCCCCccceeeccCccCceEeCccccC
Q 007616          311 EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT--LP-SVGHLPSLKNLVIKGMAKVKSVGLEFCG  387 (596)
Q Consensus       311 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~  387 (596)
                      ..+..+++|+.|+++++....+|..+.  .+++|++|++++|. ++.  +. .++.+++|+.|++.++..-..+....  
T Consensus       264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~--~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~--  338 (592)
T 3ogk_B          264 MNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA--  338 (592)
T ss_dssp             SCCCCCTTCCEEEETTCCTTTGGGGGG--GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH--
T ss_pred             HHhhccccccccCccccchhHHHHHHh--hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH--
Confidence            333344455555554443334444333  34455555555544 211  10 13444555555554221100000000  


Q ss_pred             CCCCCCCCCcceeeccc--CccccccceeEEecCCCCCCC----CCCCCCCCCEEEEeeccChh----ccCC-CCCCcce
Q 007616          388 NYCSEPFPSLETLCFED--MQEWEERIGLSIVRCPKLKGR----LPQRFSSLERIVITSCEQLL----VSYT-ALPPLCE  456 (596)
Q Consensus       388 ~~~~~~~~~L~~L~l~~--~~~l~~~~~l~l~~c~~L~~~----~p~~l~~L~~L~l~~c~~l~----~~~~-~l~~L~~  456 (596)
                          ..+++|++|++.+  .....      -..|+.+++.    +...+++|++|++ .|..+.    ..+. .+++|++
T Consensus       339 ----~~~~~L~~L~L~~g~~~~~~------~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~  407 (592)
T 3ogk_B          339 ----QYCKQLKRLRIERGADEQGM------EDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCD  407 (592)
T ss_dssp             ----HHCTTCCEEEEECCCCSSTT------SSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCE
T ss_pred             ----HhCCCCCEEEeecCcccccc------ccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcE
Confidence                0134455444442  00000      0004444321    1134788888888 444441    1222 3778888


Q ss_pred             EEecCC---cccceeeEecccccccccCCccccccc---c--------ccc---chhhhccccccccccccccceecccC
Q 007616          457 LEIDGF---SELFLILQIQGWRSRAEILPQEIRIPN---Q--------ESL---LDGLQKLSHITRISMVGSLLVYIAEG  519 (596)
Q Consensus       457 L~l~~c---~~ll~~l~~~~~~~l~~~~p~l~~l~~---p--------~~~---l~~L~~L~~l~~c~~~~~~l~~~~~~  519 (596)
                      |++++|   +.+.....-.+...+...+++|+.+.+   .        ..+   +++|+.| ++++|...+..+..    
T Consensus       408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~----  482 (592)
T 3ogk_B          408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM-LLGYVGESDEGLME----  482 (592)
T ss_dssp             EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE-EECSCCSSHHHHHH----
T ss_pred             EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe-eccCCCCCHHHHHH----
Confidence            888743   221000000000000111233333322   1        001   5667777 77777642222211    


Q ss_pred             CCCCCCCCCCCCCCCCCCCeeecCCCCCCcc--CCCC-CCCCCccEEEEecCc
Q 007616          520 GEFPQLESLSFVGNLTSLERLELPRCPVLRS--FPEN-VLPPSLVYLSIYLCP  569 (596)
Q Consensus       520 ~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~--lp~~-~~~~~L~~L~i~~C~  569 (596)
                                .+..+++|++|++++|+ ++.  ++.. ..+++|++|++++|.
T Consensus       483 ----------~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          483 ----------FSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             ----------HHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             ----------HHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence                      23567899999999987 443  2211 126789999999997

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=1.9e-17  Score=162.81  Aligned_cols=224  Identities=18%  Similarity=0.159  Sum_probs=168.5

Q ss_pred             cCCceeEEEEecccccccccccccccCccc-ccccCCCcEEeecCCCcccc---ccccccCCcCcEEEccccccccccCC
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPND-IAELKHLRYLDFSHTAIEVL---SESVSTLYNLQTLILEYCYRLKKLFP  208 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~-~~~l~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~~~~~lp~  208 (596)
                      .+.+++.+.+..+.+.         .+|.. +..+++|++|++++|.++.+   |..+..+++|++|++++| .+..+|.
T Consensus        26 ~~~~l~~L~L~~n~l~---------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~   95 (306)
T 2z66_A           26 IPSSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS   95 (306)
T ss_dssp             CCTTCCEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEE
T ss_pred             CCCCCCEEECCCCccC---------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChh
Confidence            4457778877766544         46654 68999999999999998855   677788999999999999 7888988


Q ss_pred             cccCCCccceeecCCCCccccccc--cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhh-HHH
Q 007616          209 DIGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAED-AKE  285 (596)
Q Consensus       209 ~i~~L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~-~~~  285 (596)
                      .+..+++|++|++++|. +..++.  .+..+++|++|++.++.... .....+..++.|+ .+.+.+..    ... ..+
T Consensus        96 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~-~L~l~~n~----l~~~~~~  168 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLE-VLKMAGNS----FQENFLP  168 (306)
T ss_dssp             EEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCC-EEECTTCE----EGGGEEC
T ss_pred             hcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCC-EEECCCCc----cccccch
Confidence            89999999999999998 777764  58899999999876554322 1122344455555 66665422    111 223


Q ss_pred             HhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CCCC
Q 007616          286 AQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SVGH  363 (596)
Q Consensus       286 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~  363 (596)
                      ..+..+++|+.|+++++.. ....+..+..+++|+.|++++|....++. .+.  .+++|+.|++++|...+..+ .++.
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~  245 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQH  245 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT--TCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred             hHHhhCcCCCEEECCCCCc-CCcCHHHhcCCCCCCEEECCCCccCccChhhcc--CcccCCEeECCCCCCcccCHHHHHh
Confidence            4577889999999998863 33345667788999999999999877765 333  68999999999998666555 5777


Q ss_pred             CC-ccceeeccCcc
Q 007616          364 LP-SLKNLVIKGMA  376 (596)
Q Consensus       364 l~-~L~~L~L~~~~  376 (596)
                      ++ +|+.|++++|+
T Consensus       246 ~~~~L~~L~L~~N~  259 (306)
T 2z66_A          246 FPSSLAFLNLTQND  259 (306)
T ss_dssp             CCTTCCEEECTTCC
T ss_pred             hhccCCEEEccCCC
Confidence            75 99999999876

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.70  E-value=1.1e-16  Score=166.43  Aligned_cols=224  Identities=21%  Similarity=0.218  Sum_probs=154.7

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-c
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-I  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i  210 (596)
                      .+.+++.|.+..+.+..        ..|..|..+++|++|++++|.++.++ ..+..+++|++|++++| .+..+|.. +
T Consensus        73 ~~~~l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  143 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQM--------IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAF  143 (452)
T ss_dssp             CCTTCSEEECCSSCCCE--------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTS
T ss_pred             CCCCccEEECcCCcCce--------ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhh
Confidence            45677888887776654        34677899999999999999999775 67899999999999999 77777765 8


Q ss_pred             cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      +.+++|++|++++|. +..+|. .+.++++|++|++.++........                             ..+.
T Consensus       144 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~-----------------------------~~~~  193 (452)
T 3zyi_A          144 EYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISE-----------------------------GAFE  193 (452)
T ss_dssp             SSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECT-----------------------------TTTT
T ss_pred             cccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccCh-----------------------------hhcc
Confidence            899999999999999 778876 488999999998654322111000                             1244


Q ss_pred             CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCcc
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSL  367 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L  367 (596)
                      ++++|+.|+++.+....   ...+..+++|+.|++++|.+..+ |..+.  .+++|+.|++++|......+ .++.+++|
T Consensus       194 ~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TCTTCCEEECTTSCCSS---CCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCEEECCCCcccc---cccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            55666666666654322   13455667777777777776555 33344  56777777777776443333 46667777


Q ss_pred             ceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616          368 KNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ  406 (596)
Q Consensus       368 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (596)
                      +.|++++|. +..++.....     .+++|+.|++++.+
T Consensus       269 ~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          269 VELNLAHNN-LSSLPHDLFT-----PLRYLVELHLHHNP  301 (452)
T ss_dssp             CEEECCSSC-CSCCCTTSST-----TCTTCCEEECCSSC
T ss_pred             CEEECCCCc-CCccChHHhc-----cccCCCEEEccCCC
Confidence            777777763 4444433222     26777777777643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1.5e-16  Score=164.73  Aligned_cols=224  Identities=21%  Similarity=0.238  Sum_probs=159.6

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i  210 (596)
                      ++..++.+.+..+.+..        ..+..|..+++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|. .+
T Consensus        62 ~~~~l~~L~L~~n~i~~--------~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  132 (440)
T 3zyj_A           62 ISTNTRLLNLHENQIQI--------IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAF  132 (440)
T ss_dssp             CCTTCSEEECCSCCCCE--------ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTS
T ss_pred             CCCCCcEEEccCCcCCe--------eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHh
Confidence            45667777777766554        23467899999999999999999775 67899999999999999 7888876 58


Q ss_pred             cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      ..+++|++|++++|. +..+|. .+.++++|++|++.++....     .++                        ...+.
T Consensus       133 ~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~-----~i~------------------------~~~~~  182 (440)
T 3zyj_A          133 VYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS-----YIS------------------------EGAFE  182 (440)
T ss_dssp             CSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC-----EEC------------------------TTTTT
T ss_pred             hccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc-----eeC------------------------cchhh
Confidence            999999999999999 777776 48899999999865432111     000                        01245


Q ss_pred             CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCcc
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSL  367 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L  367 (596)
                      ++++|+.|+++.+....   ...+..+++|+.|++++|....+ |..+.  .+++|+.|++++|......+ .++.+++|
T Consensus       183 ~l~~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  257 (440)
T 3zyj_A          183 GLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSL  257 (440)
T ss_dssp             TCSSCCEEECTTSCCSS---CCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred             cccccCeecCCCCcCcc---ccccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCC
Confidence            56677777777664321   23456677888888888876665 33444  67888888888877443333 56778888


Q ss_pred             ceeeccCccCceEeCccccCCCCCCCCCCcceeecccCc
Q 007616          368 KNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQ  406 (596)
Q Consensus       368 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  406 (596)
                      +.|+|++|. +..++.....     .+++|+.|++++.+
T Consensus       258 ~~L~L~~N~-l~~~~~~~~~-----~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          258 VEINLAHNN-LTLLPHDLFT-----PLHHLERIHLHHNP  290 (440)
T ss_dssp             CEEECTTSC-CCCCCTTTTS-----SCTTCCEEECCSSC
T ss_pred             CEEECCCCC-CCccChhHhc-----cccCCCEEEcCCCC
Confidence            888888864 4445443322     27788888887744

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=7.2e-19  Score=173.78  Aligned_cols=210  Identities=18%  Similarity=0.131  Sum_probs=123.2

Q ss_pred             ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616          163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  241 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~  241 (596)
                      +..+++|++|++++|.++.++ ..++.+++|++|++++| .+..+++ ++.+++|++|++++|. ++.+|.    .++|+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~----~~~L~  102 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIE  102 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE-EEEEEE----CTTCC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc-cccccC----CCCcC
Confidence            345668888888888888664 57788888888888888 5555544 7888888888888887 555542    24555


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE  321 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  321 (596)
                      +|++.++..                                            ..+.              ...+++|+.
T Consensus       103 ~L~l~~n~l--------------------------------------------~~~~--------------~~~~~~L~~  124 (317)
T 3o53_A          103 TLHAANNNI--------------------------------------------SRVS--------------CSRGQGKKN  124 (317)
T ss_dssp             EEECCSSCC--------------------------------------------SEEE--------------ECCCSSCEE
T ss_pred             EEECCCCcc--------------------------------------------CCcC--------------ccccCCCCE
Confidence            554321110                                            0000              012356778


Q ss_pred             EEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CC-CCCCccceeeccCccCceEeCccccCCCCCCCCCCcc
Q 007616          322 LKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SV-GHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLE  398 (596)
Q Consensus       322 L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~  398 (596)
                      |++++|....++. .+.  .+++|+.|++++|...+..+ .+ +.+++|+.|++++|. ++.++..       ..+++|+
T Consensus       125 L~l~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-------~~l~~L~  194 (317)
T 3o53_A          125 IYLANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQ-------VVFAKLK  194 (317)
T ss_dssp             EECCSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECC-------CCCTTCC
T ss_pred             EECCCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccc-------cccccCC
Confidence            8888877666543 333  56777777777776443222 22 356777777777764 3333211       1256677


Q ss_pred             eeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc--ChhccCCCCCCcceEEecCCc
Q 007616          399 TLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE--QLLVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       399 ~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~c~  463 (596)
                      .|+++++               +++ .+|   ..+++|+.|++++|.  .++..+..+++|+.|++++|+
T Consensus       195 ~L~Ls~N---------------~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          195 TLDLSSN---------------KLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             EEECCSS---------------CCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             EEECCCC---------------cCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence            6666653               222 111   134566666666654  224445555666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=7.5e-19  Score=189.73  Aligned_cols=344  Identities=14%  Similarity=0.057  Sum_probs=205.2

Q ss_pred             ccccCCCcEEeecCCCccc-----cccccccCCcCcEEEccccccc----cccCCcccCCCccceeecCCCCcccccccc
Q 007616          163 IAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRL----KKLFPDIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      ...+++|++|++++|.++.     ++..+..+++|++|++++|...    ..++..+.++++|++|++++|. +..+|..
T Consensus       160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~  238 (592)
T 3ogk_B          160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF  238 (592)
T ss_dssp             HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH
T ss_pred             HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH
Confidence            3467888888888887652     3344567788888888887322    2444446678888888888887 6677777


Q ss_pred             ccCCcccCCCCcEEeccC--CCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616          234 IGKLTSLRTLAKFVVGKG--NCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE  311 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  311 (596)
                      ++++++|++|++......  .......+..+.+++ .+.+....     ....+..+..+++|+.|+++++.........
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC-RLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC-EEEETTCC-----TTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhcccccc-ccCccccc-----hhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence            888888888876432111  122233445555555 56665421     1223344667888999999887743333335


Q ss_pred             ccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEec----------CCCCCC--CCC-CCCCCccceeeccCccC
Q 007616          312 MLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKN----------CNQCTT--LPS-VGHLPSLKNLVIKGMAK  377 (596)
Q Consensus       312 ~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~----------~~~~~~--l~~-l~~l~~L~~L~L~~~~~  377 (596)
                      .+..+++|+.|+++++... .++....  .+++|++|++++          |..++.  ++. ...+++|+.|++.. ..
T Consensus       313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~  389 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SD  389 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SC
T ss_pred             HHHhCcCCCEEeccCccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CC
Confidence            5677889999998844211 1222222  467899999984          554442  222 33578888888843 33


Q ss_pred             ceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCC-----C---CCCCCCCCEEEEeeccC-h----
Q 007616          378 VKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGR-----L---PQRFSSLERIVITSCEQ-L----  444 (596)
Q Consensus       378 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~-----~---p~~l~~L~~L~l~~c~~-l----  444 (596)
                      +........+    ..+++|+.|++..+.           .|+.+++.     +   ...+++|+.|++++|.. +    
T Consensus       390 l~~~~~~~l~----~~~~~L~~L~l~~~~-----------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          390 ITNESLESIG----TYLKNLCDFRLVLLD-----------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             CCHHHHHHHH----HHCCSCCEEEEEECS-----------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             ccHHHHHHHH----hhCCCCcEEEEeecC-----------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            3221111000    116778877776432           23444421     1   12488999999988763 2    


Q ss_pred             -hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCC
Q 007616          445 -LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGE  521 (596)
Q Consensus       445 -~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~  521 (596)
                       ......+++|++|++++|...       +     .        .++..+  +++|+.| ++++|+..+..+..      
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~-------~-----~--------~~~~~~~~~~~L~~L-~l~~n~l~~~~~~~------  507 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGES-------D-----E--------GLMEFSRGCPNLQKL-EMRGCCFSERAIAA------  507 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSS-------H-----H--------HHHHHHTCCTTCCEE-EEESCCCBHHHHHH------
T ss_pred             HHHHHHhCccceEeeccCCCCC-------H-----H--------HHHHHHhcCcccCee-eccCCCCcHHHHHH------
Confidence             122234888999999988621       0     0        011111  6889999 99999852221211      


Q ss_pred             CCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCC---CCCccEEEEec
Q 007616          522 FPQLESLSFVGNLTSLERLELPRCPVLRSFPENVL---PPSLVYLSIYL  567 (596)
Q Consensus       522 ~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~---~~~L~~L~i~~  567 (596)
                              ....+++|++|++++|+ ++......+   .|.+....+..
T Consensus       508 --------~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          508 --------AVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             --------HHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred             --------HHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence                    23467899999999987 554322112   35555554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=1.3e-16  Score=150.82  Aligned_cols=207  Identities=15%  Similarity=0.162  Sum_probs=144.0

Q ss_pred             cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCC-CCccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSH-SNLLEEMPL  232 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~-~~~l~~lp~  232 (596)
                      +..+|. +.  .+|++|++++|.++.+|. .++.+++|++|++++|..++.+|. .++++++|++|++++ |. ++.+|.
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDP   98 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCH
Confidence            336776 43  389999999999998876 788999999999999943777775 588999999999998 66 778775


Q ss_pred             -cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616          233 -RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE  311 (596)
Q Consensus       233 -~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  311 (596)
                       .+..+++|++|++.++.......+..+.++.                             .|+.|+++.+.........
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~-----------------------------~L~~L~l~~N~~l~~i~~~  149 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTD-----------------------------IFFILEITDNPYMTSIPVN  149 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCCCTTCCBCC-----------------------------SEEEEEEESCTTCCEECTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccccccccccc-----------------------------cccEEECCCCcchhhcCcc
Confidence             4788999999998877654322111111111                             1225555554112222233


Q ss_pred             ccCCCCCcc-EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC-CccceeeccCccCceEeCccccC
Q 007616          312 MLKPHYGLK-ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL-PSLKNLVIKGMAKVKSVGLEFCG  387 (596)
Q Consensus       312 ~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l-~~L~~L~L~~~~~l~~~~~~~~~  387 (596)
                      .+..+++|+ .|++++|....+|....  ..++|+.|++++|..++.++  .++.+ ++|+.|++++|. ++.++..   
T Consensus       150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~---  223 (239)
T 2xwt_C          150 AFQGLCNETLTLKLYNNGFTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK---  223 (239)
T ss_dssp             TTTTTBSSEEEEECCSCCCCEECTTTT--TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT---
T ss_pred             cccchhcceeEEEcCCCCCcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh---
Confidence            455677888 88888888777776554  23688999999886555654  46777 889999998854 4455433   


Q ss_pred             CCCCCCCCCcceeecccCc
Q 007616          388 NYCSEPFPSLETLCFEDMQ  406 (596)
Q Consensus       388 ~~~~~~~~~L~~L~l~~~~  406 (596)
                           .|++|+.|++.+..
T Consensus       224 -----~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          224 -----GLEHLKELIARNTW  237 (239)
T ss_dssp             -----TCTTCSEEECTTC-
T ss_pred             -----HhccCceeeccCcc
Confidence                 27888888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=1e-16  Score=157.87  Aligned_cols=82  Identities=15%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             ccCCCcEEeecCCCcc-cccccc--ccCCcCcEEEccccccccccCCcccCC-----CccceeecCCCCcccccc-cccc
Q 007616          165 ELKHLRYLDFSHTAIE-VLSESV--STLYNLQTLILEYCYRLKKLFPDIGNL-----VNLRHLKDSHSNLLEEMP-LRIG  235 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp-~~l~  235 (596)
                      .+++|++|++++|.++ .+|..+  +.+++|++|++++| .+..+|..++.+     ++|++|++++|. +..+| ..++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhc
Confidence            5777777777777776 566655  67777777777777 555556666666     777777777777 55555 5577


Q ss_pred             CCcccCCCCcEEe
Q 007616          236 KLTSLRTLAKFVV  248 (596)
Q Consensus       236 ~l~~L~~L~~~~~  248 (596)
                      ++++|++|++.++
T Consensus       171 ~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          171 VFPALSTLDLSDN  183 (312)
T ss_dssp             CCSSCCEEECCSC
T ss_pred             cCCCCCEEECCCC
Confidence            7777777776544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=2.1e-19  Score=194.19  Aligned_cols=203  Identities=18%  Similarity=0.184  Sum_probs=120.3

Q ss_pred             cccCCCcEEeecCCCcc-ccccccc-cCCcCcEEEccccccccc--cCCcccCCCccceeecCCCCcccc-----ccccc
Q 007616          164 AELKHLRYLDFSHTAIE-VLSESVS-TLYNLQTLILEYCYRLKK--LFPDIGNLVNLRHLKDSHSNLLEE-----MPLRI  234 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~-~lp~~i~-~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~l  234 (596)
                      ..+++|++|+++++.++ ..+..+. .+++|++|++++|..++.  ++..+.++++|++|++++|. +..     ++...
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            56788999999988877 3344454 688999999988855544  55545578889999998887 433     22223


Q ss_pred             cCCcccCCCCcEEec-cCCCCCchhc-cchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCC-----cch
Q 007616          235 GKLTSLRTLAKFVVG-KGNCSGLKEL-RSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK-----IQT  307 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~-~~~~~~l~~l-~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----~~~  307 (596)
                      ..+++|++|++..+. ......+..+ ..+++|+ .+.+.++.   .... ....+..+++|+.|.+..+..     ...
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~-~L~L~~~~---~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~  255 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLK-SLKLNRAV---PLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS  255 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC-EEECCTTS---CHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc-EEecCCCC---cHHH-HHHHHhcCCcceEcccccccCccchhhHH
Confidence            366788888765443 0011112221 2235555 66666542   2222 555566778888887654421     011


Q ss_pred             hhhhccCCCCCccEE-EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCC--CC-CCCCCCccceeeccCc
Q 007616          308 CVFEMLKPHYGLKEL-KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTT--LP-SVGHLPSLKNLVIKGM  375 (596)
Q Consensus       308 ~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--l~-~l~~l~~L~~L~L~~~  375 (596)
                      .....+..+++|+.| .+.+.....++..+.  .+++|++|++++|. ++.  +. .++.+++|+.|++.+|
T Consensus       256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence            223345667777777 333332233333322  46788888888877 332  11 2456788888888876

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=3.9e-15  Score=149.06  Aligned_cols=170  Identities=15%  Similarity=0.121  Sum_probs=105.6

Q ss_pred             cEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEE
Q 007616          170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV  247 (596)
Q Consensus       170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~  247 (596)
                      ++++.++++++++|..+  .+++++|+|++| .++.+|+. ++++++|++|++++|...+.+|.+ +.++++++++....
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777888888888766  367888888888 77788764 788888888888888744556654 55566555432111


Q ss_pred             eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616          248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY  327 (596)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  327 (596)
                      ..                                           +++.+           .+..+..+++|+.|++++|
T Consensus        89 ~N-------------------------------------------~l~~l-----------~~~~f~~l~~L~~L~l~~n  114 (350)
T 4ay9_X           89 AN-------------------------------------------NLLYI-----------NPEAFQNLPNLQYLLISNT  114 (350)
T ss_dssp             ET-------------------------------------------TCCEE-----------CTTSBCCCTTCCEEEEEEE
T ss_pred             CC-------------------------------------------ccccc-----------Cchhhhhcccccccccccc
Confidence            10                                           00000           1122345567888888888


Q ss_pred             CCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC-CccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          328 GGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL-PSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       328 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      ....+|..... ...++..+++.++..+..++  .+..+ ..++.|++++| .++.++.....      ..+|+.+.+.+
T Consensus       115 ~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~------~~~L~~l~l~~  186 (350)
T 4ay9_X          115 GIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFN------GTQLDELNLSD  186 (350)
T ss_dssp             CCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSST------TEEEEEEECTT
T ss_pred             ccccCCchhhc-ccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcc------ccchhHHhhcc
Confidence            87777654332 44567778887776666665  23444 45777888775 45566554332      34556555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=1.1e-16  Score=155.60  Aligned_cols=182  Identities=16%  Similarity=0.135  Sum_probs=114.6

Q ss_pred             ccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccc-cccccCC
Q 007616          161 NDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEM-PLRIGKL  237 (596)
Q Consensus       161 ~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l  237 (596)
                      ..|..+++|++|++++|.++.+ |..++.+++|++|++++|..++.+ |..++.+++|++|++++|. +..+ |..+.++
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  128 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGL  128 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCC
Confidence            3455666666666666666654 445666666666666666324444 4446666666666666666 4443 3335556


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY  317 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (596)
                      ++|++|++.++....                              .....+..+++|+.|+++.+.. .......+..++
T Consensus       129 ~~L~~L~l~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~  177 (285)
T 1ozn_A          129 AALQYLYLQDNALQA------------------------------LPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLH  177 (285)
T ss_dssp             TTCCEEECCSSCCCC------------------------------CCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred             cCCCEEECCCCcccc------------------------------cCHhHhccCCCccEEECCCCcc-cccCHHHhcCcc
Confidence            666666543332211                              0112255677888888877653 222233466788


Q ss_pred             CccEEEEeccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccC
Q 007616          318 GLKELKVRGYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAK  377 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~  377 (596)
                      +|+.|++++|....+ |.++.  .+++|+.|++++|... .++  .++.+++|+.|++++|+.
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFR--DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccCEEECCCCcccccCHhHcc--CcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCc
Confidence            999999999987665 55565  7889999999998744 444  478899999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.65  E-value=9.2e-17  Score=158.62  Aligned_cols=212  Identities=14%  Similarity=0.126  Sum_probs=145.4

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+.+..        ..|..++.+++|++|++++|.++..++ +..+++|++|++++| .+..+|.    .+
T Consensus        34 ~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~~----~~   99 (317)
T 3o53_A           34 WNVKELDLSGNPLSQ--------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP   99 (317)
T ss_dssp             GGCSEEECTTSCCCC--------CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred             CCCCEEECcCCccCc--------CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-ccccccC----CC
Confidence            467777777665553        345678999999999999999997766 999999999999999 7776653    48


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..++..  .+++|++|++.++....      +.                        ...+..+++|
T Consensus       100 ~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~------~~------------------------~~~~~~l~~L  146 (317)
T 3o53_A          100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITM------LR------------------------DLDEGCRSRV  146 (317)
T ss_dssp             TCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCS------GG------------------------GBCTGGGSSE
T ss_pred             CcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCC------cc------------------------chhhhccCCC
Confidence            99999999998 7776653  36778888765443221      10                        1123445667


Q ss_pred             ccccccccCCcchhhhhcc-CCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeecc
Q 007616          295 EALSPKWGNKIQTCVFEML-KPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIK  373 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~  373 (596)
                      +.|+++++...... +..+ ..+++|+.|++++|....++...   .+++|+.|++++|...+..+.++.+++|+.|+++
T Consensus       147 ~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          147 QYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred             CEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence            77777766532222 2222 34678888888888776665443   3678888888888744333356778888888888


Q ss_pred             CccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          374 GMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       374 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      +|. ++.++..+..      +++|+.|++++
T Consensus       223 ~N~-l~~l~~~~~~------l~~L~~L~l~~  246 (317)
T 3o53_A          223 NNK-LVLIEKALRF------SQNLEHFDLRG  246 (317)
T ss_dssp             TSC-CCEECTTCCC------CTTCCEEECTT
T ss_pred             CCc-ccchhhHhhc------CCCCCEEEccC
Confidence            863 4556544322      56667666665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.64  E-value=7.2e-16  Score=149.82  Aligned_cols=205  Identities=20%  Similarity=0.182  Sum_probs=132.9

Q ss_pred             cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCccccc-cccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEM-PLRI  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~l  234 (596)
                      .+|..+  .++|++|++++|.++.+| ..++.+++|++|++++| .+..+ |..++++++|++|++++|..++.+ |..+
T Consensus        25 ~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~  101 (285)
T 1ozn_A           25 AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (285)
T ss_dssp             SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence            566544  468999999999999876 46899999999999999 56655 677999999999999999756776 5568


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      ..+++|++|++.++....      +                        ....+..+++|+.|+++++.. .......+.
T Consensus       102 ~~l~~L~~L~l~~n~l~~------~------------------------~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~  150 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQE------L------------------------GPGLFRGLAALQYLYLQDNAL-QALPDDTFR  150 (285)
T ss_dssp             TTCTTCCEEECTTSCCCC------C------------------------CTTTTTTCTTCCEEECCSSCC-CCCCTTTTT
T ss_pred             cCCcCCCEEECCCCcCCE------E------------------------CHhHhhCCcCCCEEECCCCcc-cccCHhHhc
Confidence            888888888764332211      0                        001244556666666665542 222223355


Q ss_pred             CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616          315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE  392 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  392 (596)
                      .+++|+.|++++|....++.. +.  .+++|+.|++++|...+..+ .++.+++|+.|++++|. +..++.....     
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----  222 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALA-----  222 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHT-----
T ss_pred             cCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcc-----
Confidence            566777777777766655543 33  56677777777776443333 46667777777777653 3333322111     


Q ss_pred             CCCCcceeeccc
Q 007616          393 PFPSLETLCFED  404 (596)
Q Consensus       393 ~~~~L~~L~l~~  404 (596)
                      .+++|+.|++++
T Consensus       223 ~l~~L~~L~l~~  234 (285)
T 1ozn_A          223 PLRALQYLRLND  234 (285)
T ss_dssp             TCTTCCEEECCS
T ss_pred             cCcccCEEeccC
Confidence            155666665555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.64  E-value=5.5e-16  Score=152.17  Aligned_cols=169  Identities=20%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..+++|++|++++|.++.++. +..+++|++|++++| .+..+| .++.+++|++|++++|. +..+|. +..+++|++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC-CCCCGG-GTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC-CCCchh-hcCCCCCCE
Confidence            4455555555555555555544 555555555555555 344443 35555555555555555 444443 455555555


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++......                                .+..+++|+.|+++.+.....   ..+..+++|+.|
T Consensus       134 L~l~~n~l~~~~--------------------------------~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L  178 (308)
T 1h6u_A          134 LYLDLNQITNIS--------------------------------PLAGLTNLQYLSIGNAQVSDL---TPLANLSKLTTL  178 (308)
T ss_dssp             EECCSSCCCCCG--------------------------------GGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEE
T ss_pred             EECCCCccCcCc--------------------------------cccCCCCccEEEccCCcCCCC---hhhcCCCCCCEE
Confidence            544322211000                                023334444444444432111   114445555555


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCc
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGM  375 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~  375 (596)
                      ++++|....++. +.  .+++|+.|++++|. ++.++.+..+++|+.|++++|
T Consensus       179 ~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          179 KADDNKISDISP-LA--SLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTNQ  227 (308)
T ss_dssp             ECCSSCCCCCGG-GG--GCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEEE
T ss_pred             ECCCCccCcChh-hc--CCCCCCEEEccCCc-cCccccccCCCCCCEEEccCC
Confidence            555555544443 22  45555555555554 223334555555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=2.2e-15  Score=150.90  Aligned_cols=226  Identities=17%  Similarity=0.137  Sum_probs=151.8

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeec-CCCCcccccccc-
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKD-SHSNLLEEMPLR-  233 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l-~~~~~l~~lp~~-  233 (596)
                      ++|..+  .+++++|+|++|+|+.+|+ .|.++++|++|+|++|...+.+|.. +.++++|+.+.. ++|. +..+|++ 
T Consensus        23 ~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~~   99 (350)
T 4ay9_X           23 EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPEA   99 (350)
T ss_dssp             SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTTS
T ss_pred             ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCchh
Confidence            678766  3689999999999999986 5899999999999999555667754 788999887554 4555 8888654 


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML  313 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  313 (596)
                      +..+++|++|++.++.............                              .++..+++..+..........+
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------~~l~~l~l~~~~~i~~l~~~~f  149 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPDVHKIHS------------------------------LQKVLLDIQDNINIHTIERNSF  149 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCCCTTCCB------------------------------SSCEEEEEESCTTCCEECTTSS
T ss_pred             hhhccccccccccccccccCCchhhccc------------------------------chhhhhhhccccccccccccch
Confidence            8899999999998887644322211111                              1122222221111111111112


Q ss_pred             CC-CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          314 KP-HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       314 ~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                      .. ...++.|++++|.+..+|....  ...+|+.+++.++..++.+|  .++.+++|+.|++++| .++.++...     
T Consensus       150 ~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~-----  221 (350)
T 4ay9_X          150 VGLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYG-----  221 (350)
T ss_dssp             TTSBSSCEEEECCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSS-----
T ss_pred             hhcchhhhhhccccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhh-----
Confidence            22 2457888999988888877655  45688999998888788887  3688999999999986 466665432     


Q ss_pred             CCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEee
Q 007616          391 SEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITS  440 (596)
Q Consensus       391 ~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~  440 (596)
                         |.+|+.|.+.++.+++.+.        .+     ..+++|+.+++.+
T Consensus       222 ---~~~L~~L~~l~~~~l~~lP--------~l-----~~l~~L~~l~l~~  255 (350)
T 4ay9_X          222 ---LENLKKLRARSTYNLKKLP--------TL-----EKLVALMEASLTY  255 (350)
T ss_dssp             ---CTTCCEEECTTCTTCCCCC--------CT-----TTCCSCCEEECSC
T ss_pred             ---hccchHhhhccCCCcCcCC--------Cc-----hhCcChhhCcCCC
Confidence               6777777766665544331        11     3577788777754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2.3e-16  Score=165.01  Aligned_cols=219  Identities=14%  Similarity=0.126  Sum_probs=130.4

Q ss_pred             Ccccccc----cCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc
Q 007616          159 LPNDIAE----LKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       159 lp~~~~~----l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      +|..+..    +++|++|++++|.++.++ ..++.+++|++|++++| .+...++ ++.+++|++|++++|. ++.+|..
T Consensus        22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~   98 (487)
T 3oja_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-VQELLVG   98 (487)
T ss_dssp             HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC
T ss_pred             hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCc-CCCCCCC
Confidence            4444444    348999999999988764 57889999999999998 5655544 8889999999999987 7776643


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML  313 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  313 (596)
                          ++|++|++.++...... ...   ++.|+ .+.+.+..    .....+..+..+++|+.|+++++.... ..+..+
T Consensus        99 ----~~L~~L~L~~N~l~~~~-~~~---l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l  164 (487)
T 3oja_A           99 ----PSIETLHAANNNISRVS-CSR---GQGKK-NIYLANNK----ITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAEL  164 (487)
T ss_dssp             ----TTCCEEECCSSCCCCEE-ECC---CSSCE-EEECCSSC----CCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGG
T ss_pred             ----CCcCEEECcCCcCCCCC-ccc---cCCCC-EEECCCCC----CCCCCchhhcCCCCCCEEECCCCCCCC-cChHHH
Confidence                77888877655443211 111   22233 44443321    111222234556667777776665322 223333


Q ss_pred             C-CCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCC
Q 007616          314 K-PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSE  392 (596)
Q Consensus       314 ~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  392 (596)
                      . .+++|+.|++++|.+..+|...   .+++|+.|++++|...+..+.++.+++|+.|++++|. +..++..+..     
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~-----  235 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF-----  235 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCC-----
T ss_pred             hhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchhhcc-----
Confidence            2 4566777777776665554332   3566777777766643333355666677777776653 3344443322     


Q ss_pred             CCCCcceeeccc
Q 007616          393 PFPSLETLCFED  404 (596)
Q Consensus       393 ~~~~L~~L~l~~  404 (596)
                       +++|+.|++++
T Consensus       236 -l~~L~~L~l~~  246 (487)
T 3oja_A          236 -SQNLEHFDLRG  246 (487)
T ss_dssp             -CTTCCEEECTT
T ss_pred             -CCCCCEEEcCC
Confidence             55666665555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.62  E-value=9.8e-15  Score=140.49  Aligned_cols=85  Identities=24%  Similarity=0.364  Sum_probs=63.5

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  +++++|++++|.++.+|. .++.+++|++|++++| .+..+|.. +.++++|++|++++|. +..+|.. +
T Consensus        30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  105 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVF  105 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHc
Confidence            4565543  578888888888887764 6788888888888888 67777765 4778888888888887 6676654 5


Q ss_pred             cCCcccCCCCcE
Q 007616          235 GKLTSLRTLAKF  246 (596)
Q Consensus       235 ~~l~~L~~L~~~  246 (596)
                      ..+++|++|++.
T Consensus       106 ~~l~~L~~L~l~  117 (270)
T 2o6q_A          106 DQLVNLAELRLD  117 (270)
T ss_dssp             TTCSSCCEEECC
T ss_pred             ccccCCCEEECC
Confidence            667777777653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=3e-19  Score=186.58  Aligned_cols=358  Identities=19%  Similarity=0.127  Sum_probs=209.8

Q ss_pred             CCCcEEeecCCCccccc--cccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCCcccc-ccccc-cCC
Q 007616          167 KHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSNLLEE-MPLRI-GKL  237 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l-~~l  237 (596)
                      ++|++|+++++.++..+  ..+..+++|++|++++| .+.     .+|..+..+++|++|++++|. +.. .+..+ ..+
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l   80 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   80 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence            57899999999998543  34788999999999999 555     557778889999999999998 544 23222 234


Q ss_pred             c----ccCCCCcEEeccCCC---CCchhccchhhccceEEEcCcCCCCCHhhHHHHh-cCCccccccccccccCCcch--
Q 007616          238 T----SLRTLAKFVVGKGNC---SGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQ-LNGKKKLEALSPKWGNKIQT--  307 (596)
Q Consensus       238 ~----~L~~L~~~~~~~~~~---~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~--  307 (596)
                      .    +|++|++.++.....   .....+..++.|+ .+.+.+..-.......+... ....++|+.|+++++.....  
T Consensus        81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCC-EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCcee-EEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            4    689998766654321   1123345566666 66666533111111112222 23356788888887764322  


Q ss_pred             -hhhhccCCCCCccEEEEeccCCCCCC-CCCCC---CCCCCccEEEEecCCCCCC----CC-CCCCCCccceeeccCccC
Q 007616          308 -CVFEMLKPHYGLKELKVRGYGGTKFP-AWLGQ---SSFENLVVLRFKNCNQCTT----LP-SVGHLPSLKNLVIKGMAK  377 (596)
Q Consensus       308 -~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~  377 (596)
                       .....+..+++|+.|++++|...... ..+..   ...++|++|++++|.....    ++ .+..+++|+.|++++|. 
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-  238 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-  238 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-
Confidence             22444555678888888887643211 00100   0245788888888864332    22 34567888888888874 


Q ss_pred             ceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCC---CCCCCCEEEEeeccCh-------hcc
Q 007616          378 VKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQ---RFSSLERIVITSCEQL-------LVS  447 (596)
Q Consensus       378 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~---~l~~L~~L~l~~c~~l-------~~~  447 (596)
                      ++..+.......-...+++|+.|+++++ .+....      +   . .++.   .+++|++|++++|.--       ...
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~------~---~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~  307 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKG------C---G-DLCRVLRAKESLKELSLAGNELGDEGARLLCET  307 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHH------H---H-HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHH------H---H-HHHHHHhhCCCcceEECCCCCCchHHHHHHHHH
Confidence            3222100000000012678888888775 222100      0   0 0221   3688888888887521       111


Q ss_pred             -CCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCC
Q 007616          448 -YTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQ  524 (596)
Q Consensus       448 -~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~  524 (596)
                       ....++|++|++++|...     -.++.            .++..+  +++|+.| ++++|...+.+...+..      
T Consensus       308 l~~~~~~L~~L~L~~n~l~-----~~~~~------------~l~~~l~~~~~L~~L-~Ls~n~i~~~~~~~l~~------  363 (461)
T 1z7x_W          308 LLEPGCQLESLWVKSCSFT-----AACCS------------HFSSVLAQNRFLLEL-QISNNRLEDAGVRELCQ------  363 (461)
T ss_dssp             HTSTTCCCCEEECTTSCCB-----GGGHH------------HHHHHHHHCSSCCEE-ECCSSBCHHHHHHHHHH------
T ss_pred             hccCCccceeeEcCCCCCc-----hHHHH------------HHHHHHhhCCCccEE-EccCCccccccHHHHHH------
Confidence             223468888888888621     00011            122222  6889999 99999753322222222      


Q ss_pred             CCCCCCCC-CCCCCCeeecCCCCCCc-----cCCCC-CCCCCccEEEEecCc
Q 007616          525 LESLSFVG-NLTSLERLELPRCPVLR-----SFPEN-VLPPSLVYLSIYLCP  569 (596)
Q Consensus       525 L~~l~~~~-~l~~L~~L~l~~c~~l~-----~lp~~-~~~~~L~~L~i~~C~  569 (596)
                           .+. ..++|++|++++|. ++     .+|.. ...++|++|++++|+
T Consensus       364 -----~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          364 -----GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             -----HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             -----HHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                 122 26799999999974 55     44432 126899999999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=1.5e-15  Score=146.83  Aligned_cols=85  Identities=21%  Similarity=0.332  Sum_probs=54.1

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc-ccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP-LRI  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~l  234 (596)
                      .+|..+.  ++|++|++++|.++.++. .+..+++|++|++++| .+..++. .++++++|++|++++|. +..++ ..+
T Consensus        21 ~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~   96 (276)
T 2z62_A           21 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAF   96 (276)
T ss_dssp             SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTT
T ss_pred             ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhh
Confidence            4555443  467777777777776654 5667777777777777 5555543 46677777777777776 55544 346


Q ss_pred             cCCcccCCCCcE
Q 007616          235 GKLTSLRTLAKF  246 (596)
Q Consensus       235 ~~l~~L~~L~~~  246 (596)
                      .++++|++|++.
T Consensus        97 ~~l~~L~~L~l~  108 (276)
T 2z62_A           97 SGLSSLQKLVAV  108 (276)
T ss_dssp             TTCTTCCEEECT
T ss_pred             cCCccccEEECC
Confidence            666777766653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=6.3e-16  Score=152.21  Aligned_cols=229  Identities=14%  Similarity=0.092  Sum_probs=159.0

Q ss_pred             cCcccccccCCCcEEeecCCCcc--ccccccc-------cCCcCcEEEccccccccccCCcc--cCCCccceeecCCCCc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE--VLSESVS-------TLYNLQTLILEYCYRLKKLFPDI--GNLVNLRHLKDSHSNL  226 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~~~~~lp~~i--~~L~~L~~L~l~~~~~  226 (596)
                      .+|..+...  |++|++++|.+.  .+|..+.       .+++|++|++++|.....+|..+  +.+++|++|++++|. 
T Consensus        56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-  132 (312)
T 1wwl_A           56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-  132 (312)
T ss_dssp             CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-
T ss_pred             ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-
Confidence            457766554  999999999986  4676665       79999999999995445788876  899999999999999 


Q ss_pred             cccccccccCC-----cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhc--CCccccccccc
Q 007616          227 LEEMPLRIGKL-----TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQL--NGKKKLEALSP  299 (596)
Q Consensus       227 l~~lp~~l~~l-----~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l--~~~~~L~~L~l  299 (596)
                      +..+|..++.+     ++|++|++.++.... .....+..+++|+ .+.+.+....  ........+  ..+++|+.|++
T Consensus       133 l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~-~L~Ls~N~l~--~~~~~~~~~~~~~l~~L~~L~L  208 (312)
T 1wwl_A          133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALS-TLDLSDNPEL--GERGLISALCPLKFPTLQVLAL  208 (312)
T ss_dssp             CSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCC-EEECCSCTTC--HHHHHHHHSCTTSCTTCCEEEC
T ss_pred             CcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCC-EEECCCCCcC--cchHHHHHHHhccCCCCCEEEC
Confidence            77778778777     899999988776643 2223455556666 6677653211  111122233  78889999999


Q ss_pred             cccCCcch-hhh-hccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCC-CCCCCccceeeccCcc
Q 007616          300 KWGNKIQT-CVF-EMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS-VGHLPSLKNLVIKGMA  376 (596)
Q Consensus       300 ~~~~~~~~-~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~  376 (596)
                      +.+..... ... ..+..+++|+.|++++|.....+.......+++|+.|++++|... .+|. +.  ++|+.|++++|.
T Consensus       209 ~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             TTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred             CCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence            88764321 122 233456889999999988766542111125688999999998844 6663 43  889999998864


Q ss_pred             CceEeCccccCCCCCCCCCCcceeeccc
Q 007616          377 KVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       377 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                       ++.++. +.      .+++|+.|++++
T Consensus       286 -l~~~p~-~~------~l~~L~~L~L~~  305 (312)
T 1wwl_A          286 -LDRNPS-PD------ELPQVGNLSLKG  305 (312)
T ss_dssp             -CCSCCC-TT------TSCEEEEEECTT
T ss_pred             -CCCChh-Hh------hCCCCCEEeccC
Confidence             444433 32      278888888776

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.59  E-value=4.7e-15  Score=143.35  Aligned_cols=202  Identities=17%  Similarity=0.137  Sum_probs=142.9

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-Ccc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i  210 (596)
                      .+..++.+.+..+.+..        ..+..+..+++|++|++++|.++.++. .++.+++|++|++++| .+..++ ..+
T Consensus        26 l~~~l~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~   96 (276)
T 2z62_A           26 LPFSTKNLDLSFNPLRH--------LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF   96 (276)
T ss_dssp             SCTTCCEEECTTCCCCE--------ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred             CCCCccEEECCCCcccc--------cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhh
Confidence            45567888877765553        123478899999999999999998765 7899999999999999 666655 669


Q ss_pred             cCCCccceeecCCCCccccccc-cccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      +++++|++|++++|. +..++. .++++++|++|++.++.........                             .+.
T Consensus        97 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-----------------------------~~~  146 (276)
T 2z62_A           97 SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-----------------------------YFS  146 (276)
T ss_dssp             TTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-----------------------------GGG
T ss_pred             cCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCch-----------------------------hhc
Confidence            999999999999998 666665 5889999999987655432211111                             244


Q ss_pred             CccccccccccccCCcch--hhhhccCCCCCcc-EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCC
Q 007616          290 GKKKLEALSPKWGNKIQT--CVFEMLKPHYGLK-ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHL  364 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l  364 (596)
                      .+++|+.|+++++.....  ..+..+..++.+. .|++++|....++....  ...+|+.|++++|. ++.++  .++.+
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~-l~~~~~~~~~~l  223 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQ-LKSVPDGIFDRL  223 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSC-CSCCCTTTTTTC
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCc-eeecCHhHhccc
Confidence            455666666666543211  1222333333343 78888888777766554  34589999999887 44444  35778


Q ss_pred             CccceeeccCcc
Q 007616          365 PSLKNLVIKGMA  376 (596)
Q Consensus       365 ~~L~~L~L~~~~  376 (596)
                      ++|+.|++++|+
T Consensus       224 ~~L~~L~l~~N~  235 (276)
T 2z62_A          224 TSLQKIWLHTNP  235 (276)
T ss_dssp             CSCCEEECCSSC
T ss_pred             ccccEEEccCCc
Confidence            899999998865

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.59  E-value=1.2e-14  Score=141.15  Aligned_cols=83  Identities=24%  Similarity=0.276  Sum_probs=43.5

Q ss_pred             cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCC
Q 007616          313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYC  390 (596)
Q Consensus       313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  390 (596)
                      +..+++|+.|++++|....+|.... ..+++|+.|++++|.. +.+|  .+..+++|+.|++++|. ++.++..+..   
T Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~---  193 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENS-LYTIPKGFFG---  193 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT---
T ss_pred             HcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEECCCCcC-CccCHHHhcCcCCCCEEECCCCc-CCccChhhcc---
Confidence            3444566666666666555554322 1456666666666653 3343  24556666666666643 3444443332   


Q ss_pred             CCCCCCcceeeccc
Q 007616          391 SEPFPSLETLCFED  404 (596)
Q Consensus       391 ~~~~~~L~~L~l~~  404 (596)
                         .++|+.+.+.+
T Consensus       194 ---~~~L~~l~L~~  204 (290)
T 1p9a_G          194 ---SHLLPFAFLHG  204 (290)
T ss_dssp             ---TCCCSEEECCS
T ss_pred             ---cccCCeEEeCC
Confidence               34555555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=6.6e-15  Score=141.81  Aligned_cols=177  Identities=19%  Similarity=0.182  Sum_probs=83.0

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCcccCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRT  242 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~  242 (596)
                      ..+++|+.|+++++.++.++ .++.+++|++|++++| .+..++ .++.+++|++|++++|. +..+|.. ++++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence            44555555566555555543 2555555666666555 444443 45555556666665555 4444433 455555555


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++....      +.                        ...+..+++|+.|+++++.. .......+..+++|+.|
T Consensus       114 L~L~~n~l~~------~~------------------------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A          114 LVLVENQLQS------LP------------------------DGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             EECTTSCCCC------CC------------------------TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             EECCCCcCCc------cC------------------------HHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEE
Confidence            5432221110      00                        00122233333333333321 11111223344556666


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|....++.... ..+++|+.|++++|...+..+ .++.+++|+.|++++|+
T Consensus       163 ~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCcCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            666665555444321 145666666666665333222 24556666666666653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.58  E-value=9.9e-15  Score=143.53  Aligned_cols=80  Identities=14%  Similarity=0.047  Sum_probs=39.0

Q ss_pred             CCCcEEeecCCCcc-cccccc--ccCCcCcEEEccccccccccC----CcccCCCccceeecCCCCcccccc-ccccCCc
Q 007616          167 KHLRYLDFSHTAIE-VLSESV--STLYNLQTLILEYCYRLKKLF----PDIGNLVNLRHLKDSHSNLLEEMP-LRIGKLT  238 (596)
Q Consensus       167 ~~L~~L~L~~~~i~-~lp~~i--~~l~~L~~L~L~~~~~~~~lp----~~i~~L~~L~~L~l~~~~~l~~lp-~~l~~l~  238 (596)
                      ++|++|++++|.+. ..|..+  +.+++|++|++++|......|    ..+..+++|++|++++|. +..+| ..++.++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence            44555555555555 334444  555555555555552222221    123345555555555555 33333 3355555


Q ss_pred             ccCCCCcEE
Q 007616          239 SLRTLAKFV  247 (596)
Q Consensus       239 ~L~~L~~~~  247 (596)
                      +|++|++.+
T Consensus       170 ~L~~L~Ls~  178 (310)
T 4glp_A          170 ALTSLDLSD  178 (310)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEECCC
Confidence            555555433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=1.8e-15  Score=158.18  Aligned_cols=234  Identities=14%  Similarity=0.105  Sum_probs=170.1

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.|.+..+.+..        ..|..|+.+++|++|+|++|.++..++ ++.+++|++|++++| .+..+|.    .+
T Consensus        34 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~   99 (487)
T 3oja_A           34 WNVKELDLSGNPLSQ--------ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GP   99 (487)
T ss_dssp             GGCCEEECCSSCCCC--------CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CT
T ss_pred             CCccEEEeeCCcCCC--------CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CC
Confidence            467788887766554        345789999999999999999997765 999999999999999 7777764    38


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC-Cccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN-GKKK  293 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~-~~~~  293 (596)
                      +|++|++++|. +..+|..  .+++|++|++.++..... ....+..++.|+ .+.+.+..-    ....+..+. .+++
T Consensus       100 ~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~-~L~Ls~N~l----~~~~~~~l~~~l~~  170 (487)
T 3oja_A          100 SIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITML-RDLDEGCRSRVQ-YLDLKLNEI----DTVNFAELAASSDT  170 (487)
T ss_dssp             TCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSG-GGBCGGGGSSEE-EEECTTSCC----CEEEGGGGGGGTTT
T ss_pred             CcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCC-CchhhcCCCCCC-EEECCCCCC----CCcChHHHhhhCCc
Confidence            99999999998 7776653  468899998876665432 112334455555 666655321    122223343 6889


Q ss_pred             cccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeec
Q 007616          294 LEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVI  372 (596)
Q Consensus       294 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L  372 (596)
                      |+.|+++++.....   .....+++|+.|++++|....+|+.+.  .+++|+.|++++|... .+| .++.+++|+.|++
T Consensus       171 L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l  244 (487)
T 3oja_A          171 LEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQ--SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDL  244 (487)
T ss_dssp             CCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGG--GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEEC
T ss_pred             ccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhHc--CCCCccEEEecCCcCc-ccchhhccCCCCCEEEc
Confidence            99999998864332   334458999999999999988887766  7899999999999854 455 6888999999999


Q ss_pred             cCccCc-eEeCccccCCCCCCCCCCcceeecc
Q 007616          373 KGMAKV-KSVGLEFCGNYCSEPFPSLETLCFE  403 (596)
Q Consensus       373 ~~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~  403 (596)
                      ++|+.. ..++..+..      ++.|+.+.+.
T Consensus       245 ~~N~l~c~~~~~~~~~------l~~L~~l~~~  270 (487)
T 3oja_A          245 RGNGFHCGTLRDFFSK------NQRVQTVAKQ  270 (487)
T ss_dssp             TTCCBCHHHHHHHHTT------CHHHHHHHHH
T ss_pred             CCCCCcCcchHHHHHh------CCCCcEEecc
Confidence            998754 222222222      5666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=2.4e-16  Score=157.26  Aligned_cols=85  Identities=12%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             ccccc--CCCcEEeecCCCccccccccccCCcCcEEEcccccccc-c-cCCcccCCCccceeecCCCCccccccccccCC
Q 007616          162 DIAEL--KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK-K-LFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       162 ~~~~l--~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+..+  +++++|++++|.+...+..+..+++|++|++++|. +. . +|..++.+++|++|++++|......|..++++
T Consensus        63 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           63 VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence            34555  67777888877777666566677788888887773 43 2 66667777788888888776333556667777


Q ss_pred             cccCCCCcEE
Q 007616          238 TSLRTLAKFV  247 (596)
Q Consensus       238 ~~L~~L~~~~  247 (596)
                      ++|++|++.+
T Consensus       142 ~~L~~L~L~~  151 (336)
T 2ast_B          142 SNLVRLNLSG  151 (336)
T ss_dssp             TTCSEEECTT
T ss_pred             CCCCEEECCC
Confidence            7777776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.57  E-value=9.1e-14  Score=133.68  Aligned_cols=148  Identities=21%  Similarity=0.240  Sum_probs=100.2

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCCC
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLA  244 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~  244 (596)
                      .+.++++++++.++.+|..+.  ++|++|++++| .+..+|. .++++++|++|++++|. +..+|.+ +.++++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence            357899999999999998665  68999999999 6777775 69999999999999998 7888876 46788888876


Q ss_pred             cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616          245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV  324 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  324 (596)
                      +.++....      +                                                 ....+..+++|+.|++
T Consensus        92 l~~n~l~~------~-------------------------------------------------~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           92 VTDNKLQA------L-------------------------------------------------PIGVFDQLVNLAELRL  116 (270)
T ss_dssp             CCSSCCCC------C-------------------------------------------------CTTTTTTCSSCCEEEC
T ss_pred             CCCCcCCc------C-------------------------------------------------CHhHcccccCCCEEEC
Confidence            53322110      0                                                 0011223455666666


Q ss_pred             eccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCc
Q 007616          325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGM  375 (596)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~  375 (596)
                      ++|....++.... ..+++|+.|++++|.. +.++  .++.+++|+.|++++|
T Consensus       117 ~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          117 DRNQLKSLPPRVF-DSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CSSCCCCCCTTTT-TTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCccCeeCHHHh-CcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCC
Confidence            6666555544321 1566777777777653 3333  2566677777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=3.7e-14  Score=133.76  Aligned_cols=193  Identities=15%  Similarity=0.125  Sum_probs=143.2

Q ss_pred             CCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616          317 YGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP  393 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~  393 (596)
                      ++++.|++++|....+|. .+.  .+++|++|++++|..++.++  .++.+++|+.|++++|+.++.++.....     .
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~-----~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK-----E  103 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE-----C
T ss_pred             CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC-----C
Confidence            479999999999888776 344  78999999999997566665  5778999999999986677777654332     2


Q ss_pred             CCCcceeecccCccccccceeEEecCCCCCCCCC--CCCCCCC---EEEEeeccCh----hccCCCCCCcc-eEEecCCc
Q 007616          394 FPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLE---RIVITSCEQL----LVSYTALPPLC-ELEIDGFS  463 (596)
Q Consensus       394 ~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~---~L~l~~c~~l----~~~~~~l~~L~-~L~l~~c~  463 (596)
                      +++|+.|++++.               +++ .+|  ..+++|+   .|++++++.+    +..+..+++|+ +|++++|.
T Consensus       104 l~~L~~L~l~~n---------------~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          104 LPLLKFLGIFNT---------------GLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             CTTCCEEEEEEE---------------CCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             CCCCCEEeCCCC---------------CCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            889999888873               222 233  2456666   9999998444    23477899999 99999886


Q ss_pred             ccceeeEecccccccccCCccccccccccc--chhhhccccccccccccccceecccCCCCCCCCCCCCCCCC-CCCCee
Q 007616          464 ELFLILQIQGWRSRAEILPQEIRIPNQESL--LDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNL-TSLERL  540 (596)
Q Consensus       464 ~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~--l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l-~~L~~L  540 (596)
                      ..                      .+|...  .++|+.| ++++|+.    ++.++..          .+..+ ++|+.|
T Consensus       168 l~----------------------~i~~~~~~~~~L~~L-~L~~n~~----l~~i~~~----------~~~~l~~~L~~L  210 (239)
T 2xwt_C          168 FT----------------------SVQGYAFNGTKLDAV-YLNKNKY----LTVIDKD----------AFGGVYSGPSLL  210 (239)
T ss_dssp             CC----------------------EECTTTTTTCEEEEE-ECTTCTT----CCEECTT----------TTTTCSBCCSEE
T ss_pred             Cc----------------------ccCHhhcCCCCCCEE-EcCCCCC----cccCCHH----------HhhccccCCcEE
Confidence            21                      123322  4679999 9999975    6677653          56778 999999


Q ss_pred             ecCCCCCCccCCCCCCCCCccEEEEecCchH
Q 007616          541 ELPRCPVLRSFPENVLPPSLVYLSIYLCPYL  571 (596)
Q Consensus       541 ~l~~c~~l~~lp~~~~~~~L~~L~i~~C~~L  571 (596)
                      ++++ +.++.+|.. .+++|+.|++.++..|
T Consensus       211 ~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          211 DVSQ-TSVTALPSK-GLEHLKELIARNTWTL  239 (239)
T ss_dssp             ECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred             ECCC-CccccCChh-HhccCceeeccCccCC
Confidence            9999 568889876 6789999999988764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=5e-14  Score=136.79  Aligned_cols=181  Identities=26%  Similarity=0.264  Sum_probs=133.5

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|..+.  +++++|++++|.++.+ |..+..+++|++|++++| .+..+|.. +.+++|++|++++|. +..+|..+..
T Consensus        24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~   98 (290)
T 1p9a_G           24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQT   98 (290)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTT
T ss_pred             cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc-CCcCchhhcc
Confidence            5666553  6888899999988866 457888889999999888 67777664 788889999999888 7888888888


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      +++|++|++.++.....      +                        ...+.++++|+.|+++.+.. .......+..+
T Consensus        99 l~~L~~L~l~~N~l~~l------~------------------------~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l  147 (290)
T 1p9a_G           99 LPALTVLDVSFNRLTSL------P------------------------LGALRGLGELQELYLKGNEL-KTLPPGLLTPT  147 (290)
T ss_dssp             CTTCCEEECCSSCCCCC------C------------------------SSTTTTCTTCCEEECTTSCC-CCCCTTTTTTC
T ss_pred             CCCCCEEECCCCcCccc------C------------------------HHHHcCCCCCCEEECCCCCC-CccChhhcccc
Confidence            88888887654433210      0                        01245566777777776653 22233345667


Q ss_pred             CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      ++|+.|++++|....+|..... .+++|+.|++++|... .+| .+..+++|+.|++++|+
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             cCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCC
Confidence            8999999999998888875431 6889999999998844 555 67778899999999876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=1.7e-17  Score=179.09  Aligned_cols=102  Identities=18%  Similarity=0.118  Sum_probs=52.3

Q ss_pred             ceeEEEEecccccccccccccccCccccc-ccCCCcEEeecCC-Cccc--cccccccCCcCcEEEccccccccc-----c
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPNDIA-ELKHLRYLDFSHT-AIEV--LSESVSTLYNLQTLILEYCYRLKK-----L  206 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~-~l~~L~~L~L~~~-~i~~--lp~~i~~l~~L~~L~L~~~~~~~~-----l  206 (596)
                      +++.+.+..+.+..        ..+..+. .+++|++|++++| .++.  ++..+..+++|++|++++|. +..     +
T Consensus       106 ~L~~L~L~~~~~~~--------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l  176 (594)
T 2p1m_B          106 WLEEIRLKRMVVTD--------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWL  176 (594)
T ss_dssp             TCCEEEEESCBCCH--------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGG
T ss_pred             CCCeEEeeCcEEcH--------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHH
Confidence            55666665543322        2223332 4667777777766 4443  44444567777777777763 322     2


Q ss_pred             CCcccCCCccceeecCCCC-cc--ccccccccCCcccCCCCcE
Q 007616          207 FPDIGNLVNLRHLKDSHSN-LL--EEMPLRIGKLTSLRTLAKF  246 (596)
Q Consensus       207 p~~i~~L~~L~~L~l~~~~-~l--~~lp~~l~~l~~L~~L~~~  246 (596)
                      +.....+++|++|++++|. .+  ..++.-+.++++|++|++.
T Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            2223355667777776664 01  1111112345666666653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.55  E-value=2.4e-14  Score=140.41  Aligned_cols=167  Identities=19%  Similarity=0.248  Sum_probs=125.9

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+.+.         .++. +..+++|++|++++|.++.++ .+..+++|++|++++| .+..+|. ++.++
T Consensus        63 ~~L~~L~L~~n~i~---------~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~  129 (308)
T 1h6u_A           63 NNLIGLELKDNQIT---------DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLS  129 (308)
T ss_dssp             TTCCEEECCSSCCC---------CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCT
T ss_pred             CCCCEEEccCCcCC---------CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCC
Confidence            45566666555443         4555 889999999999999999886 6899999999999999 7888875 99999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..+|. ++.+++|++|++.++......   .                             +..+++|
T Consensus       130 ~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~---~-----------------------------l~~l~~L  175 (308)
T 1h6u_A          130 NLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLT---P-----------------------------LANLSKL  175 (308)
T ss_dssp             TCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCG---G-----------------------------GTTCTTC
T ss_pred             CCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCCh---h-----------------------------hcCCCCC
Confidence            99999999998 788776 888999999987554332111   1                             3445667


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ  354 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  354 (596)
                      +.|+++.+......   .+..+++|+.|++++|....++. +.  .+++|+.|++++|..
T Consensus       176 ~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          176 TTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSP-LA--NTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCGG-GT--TCTTCCEEEEEEEEE
T ss_pred             CEEECCCCccCcCh---hhcCCCCCCEEEccCCccCcccc-cc--CCCCCCEEEccCCee
Confidence            77777666432221   25667888999999888777764 33  688899999998873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.54  E-value=2e-16  Score=160.88  Aligned_cols=214  Identities=15%  Similarity=0.089  Sum_probs=125.3

Q ss_pred             cCcccccccCCCcEEeecCCCccc-----cccccccCCcCcEEEcccccccc----ccCCcc-------cCCCccceeec
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRLK----KLFPDI-------GNLVNLRHLKD  221 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~----~lp~~i-------~~L~~L~~L~l  221 (596)
                      .++..+..+++|++|++++|.+..     ++..+..+++|++|++++| .+.    .+|..+       ..+++|++|++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            677788889999999999998873     4455778999999999987 333    344444       78899999999


Q ss_pred             CCCCcccc-----ccccccCCcccCCCCcEEeccCCC--CCch-hccch---------hhccceEEEcCcCCCCCHhhHH
Q 007616          222 SHSNLLEE-----MPLRIGKLTSLRTLAKFVVGKGNC--SGLK-ELRSL---------MHLQEKLTISGLENVNDAEDAK  284 (596)
Q Consensus       222 ~~~~~l~~-----lp~~l~~l~~L~~L~~~~~~~~~~--~~l~-~l~~L---------~~L~~~l~i~~~~~~~~~~~~~  284 (596)
                      ++|. ++.     +|..+.++++|++|++.++.....  ..+. .+..+         +.|+ .+.+.+..-.......+
T Consensus       102 s~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l  179 (386)
T 2ca6_A          102 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR-SIICGRNRLENGSMKEW  179 (386)
T ss_dssp             CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC-EEECCSSCCTGGGHHHH
T ss_pred             CCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc-EEECCCCCCCcHHHHHH
Confidence            9998 554     777788899999998766544210  0011 12222         3444 45554422111111222


Q ss_pred             HHhcCCccccccccccccCCcchh---hhh-ccCCCCCccEEEEeccCC-----CCCCCCCCCCCCCCccEEEEecCCCC
Q 007616          285 EAQLNGKKKLEALSPKWGNKIQTC---VFE-MLKPHYGLKELKVRGYGG-----TKFPAWLGQSSFENLVVLRFKNCNQC  355 (596)
Q Consensus       285 ~~~l~~~~~L~~L~l~~~~~~~~~---~~~-~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~~  355 (596)
                      ...+..+++|+.|+++++......   ... .+..+++|+.|++++|..     ..+|..+.  .+++|+.|++++|...
T Consensus       180 ~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCC
T ss_pred             HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCCCc
Confidence            234455556666666655432211   122 445556666666666654     23344333  4556666666666532


Q ss_pred             CC----CC-CC--CCCCccceeeccCcc
Q 007616          356 TT----LP-SV--GHLPSLKNLVIKGMA  376 (596)
Q Consensus       356 ~~----l~-~l--~~l~~L~~L~L~~~~  376 (596)
                      ..    ++ .+  +.+++|+.|++++|.
T Consensus       258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          258 ARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            21    11 22  335666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.53  E-value=2.3e-14  Score=139.33  Aligned_cols=170  Identities=19%  Similarity=0.221  Sum_probs=112.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..+++|++|++++|.+..++. ++.+++|++|++++| .+..++. ++++++|++|++++|. +..+|. ++.+++|++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~  116 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKS  116 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCE
T ss_pred             hhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCE
Confidence            3566777788888877777753 777778888888877 6666665 7777788888888777 666554 777777777


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++....   +.                             .+..+++|+.|+++.+.....   ..+..+++|+.|
T Consensus       117 L~L~~n~i~~---~~-----------------------------~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L  161 (291)
T 1h6t_A          117 LSLEHNGISD---IN-----------------------------GLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTL  161 (291)
T ss_dssp             EECTTSCCCC---CG-----------------------------GGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEE
T ss_pred             EECCCCcCCC---Ch-----------------------------hhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEE
Confidence            7654332211   11                             123344555555555432221   345556778888


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|....++. +.  .+++|+.|++++|. ++.++.+..+++|+.|++++|.
T Consensus       162 ~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          162 SLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred             EccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcCCc
Confidence            888887776665 33  67788888888876 4556677788888888888764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=7.5e-14  Score=134.40  Aligned_cols=199  Identities=19%  Similarity=0.189  Sum_probs=147.6

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNL  213 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L  213 (596)
                      ..++.+.+..+...         .+ +.++.+++|++|++++|.++.++ .++.+++|++|++++| .+..+|.. ++++
T Consensus        41 ~~L~~L~l~~~~i~---------~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l  108 (272)
T 3rfs_A           41 NSIDQIIANNSDIK---------SV-QGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKL  108 (272)
T ss_dssp             TTCCEEECTTSCCC---------CC-TTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTC
T ss_pred             cceeeeeeCCCCcc---------cc-cccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCC
Confidence            34556665554433         22 34788999999999999999875 6899999999999999 67777655 7899


Q ss_pred             CccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcc
Q 007616          214 VNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKK  292 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~  292 (596)
                      ++|++|++++|. +..+|.. ++.+++|++|++.++....      +.                        ...+..++
T Consensus       109 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~------~~------------------------~~~~~~l~  157 (272)
T 3rfs_A          109 TNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQS------LP------------------------KGVFDKLT  157 (272)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCC------CC------------------------TTTTTTCT
T ss_pred             cCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCc------cC------------------------HHHhccCc
Confidence            999999999999 7777765 7889999999875543321      10                        01245667


Q ss_pred             ccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCCCCCCCCccceee
Q 007616          293 KLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLV  371 (596)
Q Consensus       293 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~  371 (596)
                      +|+.|+++.+.. .......+..+++|+.|++++|....++.. +.  .+++|+.|++++|+..      +.+++|+.|+
T Consensus       158 ~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~------~~~~~l~~l~  228 (272)
T 3rfs_A          158 NLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNPWD------CTCPGIRYLS  228 (272)
T ss_dssp             TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSSCBC------CCTTTTHHHH
T ss_pred             cCCEEECCCCCc-CccCHHHhcCCccCCEEECCCCcCCccCHHHHh--CCcCCCEEEccCCCcc------ccCcHHHHHH
Confidence            788888877753 233334467789999999999998877764 34  7899999999999643      5577889999


Q ss_pred             ccCccCceEeCccc
Q 007616          372 IKGMAKVKSVGLEF  385 (596)
Q Consensus       372 L~~~~~l~~~~~~~  385 (596)
                      +..+...+.++...
T Consensus       229 ~~~n~~~g~ip~~~  242 (272)
T 3rfs_A          229 EWINKHSGVVRNSA  242 (272)
T ss_dssp             HHHHHTGGGBBCTT
T ss_pred             HHHHhCCCcccCcc
Confidence            88877666665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=4.3e-14  Score=128.96  Aligned_cols=152  Identities=16%  Similarity=0.199  Sum_probs=104.0

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      .+.+++|++|++++|.++.+| .+..+++|++|++++| .+..++ .++.+++|++|++++|......|..++.+++|++
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            367889999999999999888 6889999999999999 666664 6888999999999999833346777888888877


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++...                                                       ...+..+..+++|+.|
T Consensus       117 L~Ls~n~i~-------------------------------------------------------~~~~~~l~~l~~L~~L  141 (197)
T 4ezg_A          117 LDISHSAHD-------------------------------------------------------DSILTKINTLPKVNSI  141 (197)
T ss_dssp             EECCSSBCB-------------------------------------------------------GGGHHHHTTCSSCCEE
T ss_pred             EEecCCccC-------------------------------------------------------cHhHHHHhhCCCCCEE
Confidence            765333211                                                       1112223334556666


Q ss_pred             EEeccC-CCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616          323 KVRGYG-GTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|. ...+| .+.  .+++|+.|++++|. ++.++.+..+++|+.|++++|.
T Consensus       142 ~L~~n~~i~~~~-~l~--~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          142 DLSYNGAITDIM-PLK--TLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             ECCSCTBCCCCG-GGG--GCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             EccCCCCccccH-hhc--CCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            666655 55554 233  56677777777766 3445566677777777777654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.48  E-value=3.7e-15  Score=148.56  Aligned_cols=166  Identities=17%  Similarity=0.112  Sum_probs=101.4

Q ss_pred             CcccccccCCCcEEeecCCCccc--cccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc--ccccc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIEV--LSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE--MPLRI  234 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~l  234 (596)
                      .+..+..+++|++|++++|.++.  +|..+..+++|++|++++|......|..++.+++|++|++++|..++.  +|..+
T Consensus        85 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~  164 (336)
T 2ast_B           85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL  164 (336)
T ss_dssp             CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred             cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence            34446678999999999998873  788889999999999999954446777888999999999999954653  66668


Q ss_pred             cCCcccCCCCcEEe-ccCCCCCchhccchh-hccceEEEcCcC-CCCCHhhHHHHhcCCccccccccccccCCcchhhhh
Q 007616          235 GKLTSLRTLAKFVV-GKGNCSGLKELRSLM-HLQEKLTISGLE-NVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFE  311 (596)
Q Consensus       235 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~-~L~~~l~i~~~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  311 (596)
                      .++++|++|++.++ ..........+..++ +|+ .+.+.++. ...  .......+..+++|+.|+++++.......+.
T Consensus       165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~-~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT-QLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC-EEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC-EEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence            88899999887655 332111111223333 343 44444321 111  1222233344455555555544422233333


Q ss_pred             ccCCCCCccEEEEecc
Q 007616          312 MLKPHYGLKELKVRGY  327 (596)
Q Consensus       312 ~l~~~~~L~~L~l~~~  327 (596)
                      .+..+++|+.|++++|
T Consensus       242 ~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGGGCTTCCEEECTTC
T ss_pred             HHhCCCCCCEeeCCCC
Confidence            4444455555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.47  E-value=1e-13  Score=147.90  Aligned_cols=170  Identities=19%  Similarity=0.226  Sum_probs=109.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..+++|+.|++++|.+..+| .++.+++|++|+|++| .+..+|. +..+++|+.|++++|. +..+| .+..+++|++
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCE
T ss_pred             hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCE
Confidence            356677777777777777765 4677777777777777 5666655 7777777777777776 66655 4667777777


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++....   +..                             +..+++|+.|+++.+.....   ..+..+++|+.|
T Consensus       114 L~Ls~N~l~~---l~~-----------------------------l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L  158 (605)
T 1m9s_A          114 LSLEHNGISD---ING-----------------------------LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTL  158 (605)
T ss_dssp             EECTTSCCCC---CGG-----------------------------GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEE
T ss_pred             EEecCCCCCC---Ccc-----------------------------ccCCCccCEEECCCCccCCc---hhhcccCCCCEE
Confidence            7654332211   111                             33344555555555442221   345566777777


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|.+..++. +.  .+++|+.|+|++|. +..++.++.+++|+.|+|++|.
T Consensus       159 ~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          159 SLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred             ECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence            777777666655 33  67788888888776 4455677778888888887764

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.46  E-value=1.1e-14  Score=154.29  Aligned_cols=100  Identities=18%  Similarity=0.255  Sum_probs=82.6

Q ss_pred             hhhHHHHHHhhhhhhhhHHHHHHh-----------HhccCCCCcccCHHhHHHHHHHc--CCCCCCCCCCCHHHHHHHHH
Q 007616           15 FKGFRGALGVSYYCLLSYVKRCFA-----------YCSFLPKGYRFDERQIVLLWMAE--GLLQHETYGKQMEEFGRKSF   81 (596)
Q Consensus        15 ~~~i~~~L~lSY~~L~~~lk~cfl-----------~~a~fpe~~~i~~~~Li~~wi~~--g~~~~~~~~~~~~~~~~~~~   81 (596)
                      .++|.++|++||++||.++|.||+           |||+||+|+.|+    +++|+|+  ||+.........+++++ ++
T Consensus       360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l  434 (549)
T 2a5y_B          360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RL  434 (549)
T ss_dssp             SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HH
T ss_pred             HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HH
Confidence            356788999999999999999999           999999999998    8999999  99987544667788888 99


Q ss_pred             HHHHhCCccceecC-CCCeEEEcchHHHHHHHhhccceE
Q 007616           82 QGLHSRSFFQQSKI-DASRFLMHDLIHDLACWASGEICW  119 (596)
Q Consensus        82 ~~L~~~~Ll~~~~~-~~~~~~mhd~i~~l~~~~~~~~~~  119 (596)
                      ++|+++||++.... ...+|+|||+||++|++++++++.
T Consensus       435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            99999999998753 346899999999999999887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.44  E-value=1e-12  Score=124.82  Aligned_cols=158  Identities=23%  Similarity=0.271  Sum_probs=92.0

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++++.|++++|.++.++. .++.+++|++|++++| .+..++. .+..+++|++|++++|. +..+|.. +
T Consensus        28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  103 (251)
T 3m19_A           28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVF  103 (251)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhHh
Confidence            4555543  467777777777775543 5677777777777777 4444443 36777777777777777 5555543 4


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      +.+++|++|++.++...                                                       ......+.
T Consensus       104 ~~l~~L~~L~L~~N~l~-------------------------------------------------------~~~~~~~~  128 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLK-------------------------------------------------------SLPSGVFD  128 (251)
T ss_dssp             TTCTTCCEEECCSSCCC-------------------------------------------------------CCCTTTTT
T ss_pred             cccCCCCEEEcCCCcCC-------------------------------------------------------CcChhHhc
Confidence            55666666554322110                                                       00011123


Q ss_pred             CCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          315 PHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      .+++|+.|++++|....+|. .+.  .+++|+.|++++|......+ .++.+++|+.|++++|+
T Consensus       129 ~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          129 RLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            34566666666666665554 233  56677777777766433222 45666777777776654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.44  E-value=1.6e-15  Score=154.34  Aligned_cols=250  Identities=15%  Similarity=0.095  Sum_probs=149.8

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccc-----cCCcccCCCccceeecCCCCccc----cccccc---
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-----LFPDIGNLVNLRHLKDSHSNLLE----EMPLRI---  234 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~----~lp~~l---  234 (596)
                      +.|++..+....+..++..+..+++|++|++++| .+..     ++..+..+++|++|++++|. +.    .+|.++   
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l   86 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLL   86 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHH
Confidence            3566666666677788888999999999999999 4443     44557889999999999974 33    345444   


Q ss_pred             ----cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---
Q 007616          235 ----GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---  307 (596)
Q Consensus       235 ----~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---  307 (596)
                          .++++|++|++.++..... .                         ...+...+..+++|+.|+++.+.....   
T Consensus        87 ~~~l~~~~~L~~L~Ls~n~l~~~-~-------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~  140 (386)
T 2ca6_A           87 LQALLKCPKLHTVRLSDNAFGPT-A-------------------------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGA  140 (386)
T ss_dssp             HHHHTTCTTCCEEECCSCCCCTT-T-------------------------HHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred             HHHHhhCCcccEEECCCCcCCHH-H-------------------------HHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence                6778888887655543221 0                         112223344555666666665543111   


Q ss_pred             hhhhccCCC---------CCccEEEEeccCCC--CCCC---CCCCCCCCCccEEEEecCCCCC-----CCC-CCCCCCcc
Q 007616          308 CVFEMLKPH---------YGLKELKVRGYGGT--KFPA---WLGQSSFENLVVLRFKNCNQCT-----TLP-SVGHLPSL  367 (596)
Q Consensus       308 ~~~~~l~~~---------~~L~~L~l~~~~~~--~~~~---~~~~~~~~~L~~L~l~~~~~~~-----~l~-~l~~l~~L  367 (596)
                      .....+..+         ++|+.|++++|...  .++.   .+.  .+++|+.|++++|....     .++ .+..+++|
T Consensus       141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ--SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH--HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH--hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence            111112222         67777777776653  2221   122  45677777777775331     233 56677778


Q ss_pred             ceeeccCccCc----eEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-----CCCCCCCEEEE
Q 007616          368 KNLVIKGMAKV----KSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-----QRFSSLERIVI  438 (596)
Q Consensus       368 ~~L~L~~~~~l----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-----~~l~~L~~L~l  438 (596)
                      +.|++++|...    ..++..+..      +++|+.|+++++. +....      .   . .+|     ..+++|+.|++
T Consensus       219 ~~L~Ls~n~l~~~g~~~l~~~l~~------~~~L~~L~L~~n~-i~~~~------~---~-~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          219 KVLDLQDNTFTHLGSSALAIALKS------WPNLRELGLNDCL-LSARG------A---A-AVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             CEEECCSSCCHHHHHHHHHHHGGG------CTTCCEEECTTCC-CCHHH------H---H-HHHHHHHTCSSCCCCEEEC
T ss_pred             cEEECcCCCCCcHHHHHHHHHHcc------CCCcCEEECCCCC-Cchhh------H---H-HHHHHHhhccCCCeEEEEC
Confidence            88888776531    333333322      6778877777642 11100      0   0 012     12788999999


Q ss_pred             eeccC-------hhccC-CCCCCcceEEecCCc
Q 007616          439 TSCEQ-------LLVSY-TALPPLCELEIDGFS  463 (596)
Q Consensus       439 ~~c~~-------l~~~~-~~l~~L~~L~l~~c~  463 (596)
                      ++|.-       ++..+ .++++|++|++++|.
T Consensus       282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            88862       33344 458999999999997

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.42  E-value=2e-13  Score=134.20  Aligned_cols=101  Identities=18%  Similarity=0.108  Sum_probs=57.0

Q ss_pred             eeEEEEecccccccccccccccCcccc--cccCCCcEEeecCCCcccc-c----cccccCCcCcEEEccccccccccC-C
Q 007616          137 LRHLSYLTSRFDGIKRFEGLHELPNDI--AELKHLRYLDFSHTAIEVL-S----ESVSTLYNLQTLILEYCYRLKKLF-P  208 (596)
Q Consensus       137 ~~~l~~~~~~~~~~~~~~~l~~lp~~~--~~l~~L~~L~L~~~~i~~l-p----~~i~~l~~L~~L~L~~~~~~~~lp-~  208 (596)
                      ++.+.+..+.+.+        ..|..+  ..+++|++|++++|.++.. |    ..+..+++|++|++++| .+..+| .
T Consensus        93 L~~L~l~~n~l~~--------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~  163 (310)
T 4glp_A           93 LKELTLEDLKITG--------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCE  163 (310)
T ss_dssp             CCEEEEESCCCBS--------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTT
T ss_pred             eeEEEeeCCEecc--------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHH
Confidence            5555555554433        445555  6667777777777766632 1    23345667777777777 344333 4


Q ss_pred             cccCCCccceeecCCCCcccc--cccc--ccCCcccCCCCcE
Q 007616          209 DIGNLVNLRHLKDSHSNLLEE--MPLR--IGKLTSLRTLAKF  246 (596)
Q Consensus       209 ~i~~L~~L~~L~l~~~~~l~~--lp~~--l~~l~~L~~L~~~  246 (596)
                      .++.+++|++|++++|...+.  ++..  ++.+++|++|++.
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence            566777777777777762221  2222  3566666666653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=9.9e-13  Score=127.69  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=127.1

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+...         .+| .+..+++|++|++++|.++.++. ++.+++|++|++++| .+..+|. ++.++
T Consensus        46 ~~L~~L~l~~~~i~---------~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~  112 (291)
T 1h6t_A           46 NSIDQIIANNSDIK---------SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLK  112 (291)
T ss_dssp             HTCCEEECTTSCCC---------CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCT
T ss_pred             CcccEEEccCCCcc---------cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCC
Confidence            34566666555443         343 37889999999999999999887 999999999999999 7777765 99999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      +|++|++++|. +..++ .+..+++|++|++.++.....   .                             .+..+++|
T Consensus       113 ~L~~L~L~~n~-i~~~~-~l~~l~~L~~L~l~~n~l~~~---~-----------------------------~l~~l~~L  158 (291)
T 1h6t_A          113 KLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITDI---T-----------------------------VLSRLTKL  158 (291)
T ss_dssp             TCCEEECTTSC-CCCCG-GGGGCTTCCEEECCSSCCCCC---G-----------------------------GGGGCTTC
T ss_pred             CCCEEECCCCc-CCCCh-hhcCCCCCCEEEccCCcCCcc---h-----------------------------hhccCCCC
Confidence            99999999998 77774 588899999998755433211   1                             24456677


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQ  354 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  354 (596)
                      +.|+++.+......   .+..+++|+.|++++|....++. +.  .+++|+.|++++|+.
T Consensus       159 ~~L~L~~N~l~~~~---~l~~l~~L~~L~L~~N~i~~l~~-l~--~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          159 DTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQEC  212 (291)
T ss_dssp             SEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCBCGG-GT--TCTTCSEEEEEEEEE
T ss_pred             CEEEccCCccccch---hhcCCCccCEEECCCCcCCCChh-hc--cCCCCCEEECcCCcc
Confidence            77777776532221   26778899999999998888765 34  688999999998873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.39  E-value=2.2e-12  Score=122.50  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=116.1

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i  210 (596)
                      ++..++.+.+..+.+..        ..|..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+|. .+
T Consensus        33 ~~~~l~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~  103 (251)
T 3m19_A           33 IPADTEKLDLQSTGLAT--------LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVF  103 (251)
T ss_dssp             CCTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred             CCCCCCEEEccCCCcCc--------cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHh
Confidence            44567777777666554        335568999999999999999997754 5799999999999999 6777764 47


Q ss_pred             cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLN  289 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~  289 (596)
                      +.+++|++|++++|. ++.+|.. +..+++|++|++.++...      .+                              
T Consensus       104 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------~~------------------------------  146 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQ------SI------------------------------  146 (251)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC------CC------------------------------
T ss_pred             cccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCC------cc------------------------------
Confidence            899999999999998 8888876 577888888875433211      00                              


Q ss_pred             CccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCC-CCCCCCCCCccEEEEecCCCC
Q 007616          290 GKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPA-WLGQSSFENLVVLRFKNCNQC  355 (596)
Q Consensus       290 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  355 (596)
                                         ....+..+++|+.|++++|....++. .+.  .+++|+.|++++|+..
T Consensus       147 -------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          147 -------------------PAGAFDKLTNLQTLSLSTNQLQSVPHGAFD--RLGKLQTITLFGNQFD  192 (251)
T ss_dssp             -------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCCBC
T ss_pred             -------------------CHHHcCcCcCCCEEECCCCcCCccCHHHHh--CCCCCCEEEeeCCcee
Confidence                               01123345678888888888777765 333  6789999999988744

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.38  E-value=1.2e-12  Score=125.12  Aligned_cols=147  Identities=19%  Similarity=0.211  Sum_probs=83.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++++++|++|++++|. ++.+|... . ++|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~-~-~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGIP-S-ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCC-C-SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCccc-c-CcccE
Confidence            455666666666666666655 4566666666666666 5555554 6666666666666665 55554322 1 44444


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++                                                      +.+....   ...+..+++|+.|
T Consensus       111 L~L------------------------------------------------------~~N~l~~---~~~l~~l~~L~~L  133 (263)
T 1xeu_A          111 LFL------------------------------------------------------DNNELRD---TDSLIHLKNLEIL  133 (263)
T ss_dssp             EEC------------------------------------------------------CSSCCSB---SGGGTTCTTCCEE
T ss_pred             EEc------------------------------------------------------cCCccCC---ChhhcCcccccEE
Confidence            443                                                      2222111   1123445566666


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCcc
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~  376 (596)
                      ++++|....++ .+.  .+++|+.|++++|.. +.++.++.+++|+.|++++|.
T Consensus       134 ~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          134 SIRNNKLKSIV-MLG--FLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             ECTTSCCCBCG-GGG--GCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE
T ss_pred             ECCCCcCCCCh-HHc--cCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc
Confidence            66666665554 233  566777777777663 333666677777777777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.37  E-value=3.8e-14  Score=142.60  Aligned_cols=213  Identities=12%  Similarity=0.035  Sum_probs=114.4

Q ss_pred             CcccccccCCCcEEeecCCCccccc-----cccccCC-cCcEEEcccccccccc-CCcccCC-----CccceeecCCCCc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIEVLS-----ESVSTLY-NLQTLILEYCYRLKKL-FPDIGNL-----VNLRHLKDSHSNL  226 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~~~~~l-p~~i~~L-----~~L~~L~l~~~~~  226 (596)
                      +|..+...++|++|++++|.++..+     ..+..++ +|++|++++| .++.. +..+..+     ++|++|++++|. 
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-   91 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-   91 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred             HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence            3444445555788888877777554     4566677 7888888777 44433 3444443     777888887777 


Q ss_pred             ccccc-cc----ccCC-cccCCCCcEEeccCCCCCchhc----cch-hhccceEEEcCcCCCCCHhhHHHHhcCCcc-cc
Q 007616          227 LEEMP-LR----IGKL-TSLRTLAKFVVGKGNCSGLKEL----RSL-MHLQEKLTISGLENVNDAEDAKEAQLNGKK-KL  294 (596)
Q Consensus       227 l~~lp-~~----l~~l-~~L~~L~~~~~~~~~~~~l~~l----~~L-~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~-~L  294 (596)
                      ++..+ ..    +..+ ++|++|++.++.... .....+    ..+ +.|+ .+.+.+..-.......+...+...+ +|
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~-~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSSSEFKQAFSNLPASIT-SLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHTTSCTTCC-EEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHHHHHHHHHHhCCCcee-EEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            44433 22    3333 677777766555422 111111    111 2444 5555543221111223333444444 77


Q ss_pred             ccccccccCCcchh---hhhccCCC-CCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCCCCCCCC-----C
Q 007616          295 EALSPKWGNKIQTC---VFEMLKPH-YGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCNQCTTLP-----S  360 (596)
Q Consensus       295 ~~L~l~~~~~~~~~---~~~~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~l~-----~  360 (596)
                      +.|+++++......   ....+... ++|+.|++++|....     ++..+.. ..++|++|++++|.....-+     .
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~-~~~~L~~L~Ls~N~l~~~~~~~l~~~  248 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS-IPNHVVSLNLCLNCLHGPSLENLKLL  248 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-SCTTCCEEECCSSCCCCCCHHHHHHT
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-CCCCceEEECcCCCCCcHHHHHHHHH
Confidence            77777776532111   12233344 477777777776544     2322220 13477777777776332111     2


Q ss_pred             CCCCCccceeeccCcc
Q 007616          361 VGHLPSLKNLVIKGMA  376 (596)
Q Consensus       361 l~~l~~L~~L~L~~~~  376 (596)
                      +..+++|+.|++++|.
T Consensus       249 ~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             TTTTTTCSEEEEEHHH
T ss_pred             HhcCCCccEEEeccCC
Confidence            4566777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.35  E-value=7.1e-14  Score=140.62  Aligned_cols=249  Identities=12%  Similarity=0.071  Sum_probs=149.1

Q ss_pred             EEeecCCCcccc-ccccccCCcCcEEEccccccccccC-----CcccCCC-ccceeecCCCCccccc-cccccCC-----
Q 007616          171 YLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLF-----PDIGNLV-NLRHLKDSHSNLLEEM-PLRIGKL-----  237 (596)
Q Consensus       171 ~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp-----~~i~~L~-~L~~L~l~~~~~l~~l-p~~l~~l-----  237 (596)
                      ++++++|.++.. |..+....+|++|++++| .++..+     ..+.+++ +|++|++++|. ++.. +..+..+     
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~   79 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIP   79 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccC
Confidence            468889999854 555566667999999999 676665     4577888 99999999998 5554 4445554     


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCc-cccccccccccCCcchh---hhhcc
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK-KKLEALSPKWGNKIQTC---VFEML  313 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~---~~~~l  313 (596)
                      ++|++|++.++..... .                         ...+...+..+ ++|+.|+++++......   ....+
T Consensus        80 ~~L~~L~Ls~n~l~~~-~-------------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  133 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYK-S-------------------------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF  133 (362)
T ss_dssp             TTCCEEECCSSCGGGS-C-------------------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             CCccEEECcCCcCChH-H-------------------------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH
Confidence            7888888755543211 1                         11122223334 56777777766532111   11223


Q ss_pred             CC-CCCccEEEEeccCCCC-----CCCCCCCCCC-CCccEEEEecCCCCCCCC-----CCCCC-CccceeeccCccCceE
Q 007616          314 KP-HYGLKELKVRGYGGTK-----FPAWLGQSSF-ENLVVLRFKNCNQCTTLP-----SVGHL-PSLKNLVIKGMAKVKS  380 (596)
Q Consensus       314 ~~-~~~L~~L~l~~~~~~~-----~~~~~~~~~~-~~L~~L~l~~~~~~~~l~-----~l~~l-~~L~~L~L~~~~~l~~  380 (596)
                      .. +++|+.|++++|....     ++..+.  .+ ++|++|++++|......+     .+..+ ++|+.|++++|. ++.
T Consensus       134 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~  210 (362)
T 3goz_A          134 SNLPASITSLNLRGNDLGIKSSDELIQILA--AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGL  210 (362)
T ss_dssp             TTSCTTCCEEECTTSCGGGSCHHHHHHHHH--TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGG
T ss_pred             HhCCCceeEEEccCCcCCHHHHHHHHHHHh--cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CCh
Confidence            33 3578888888776542     222222  23 378888888876433222     23344 488888888875 322


Q ss_pred             -----eCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeecc----------Chh
Q 007616          381 -----VGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCE----------QLL  445 (596)
Q Consensus       381 -----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~----------~l~  445 (596)
                           ++..+..     ..++|+.|+++++. +....      ...+. .....+++|+.|++++|.          .+.
T Consensus       211 ~~~~~l~~~l~~-----~~~~L~~L~Ls~N~-l~~~~------~~~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          211 KSYAELAYIFSS-----IPNHVVSLNLCLNC-LHGPS------LENLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             SCHHHHHHHHHH-----SCTTCCEEECCSSC-CCCCC------HHHHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHhc-----CCCCceEEECcCCC-CCcHH------HHHHH-HHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence                 1111111     02478888888732 11110      00000 112457889999999986          124


Q ss_pred             ccCCCCCCcceEEecCCc
Q 007616          446 VSYTALPPLCELEIDGFS  463 (596)
Q Consensus       446 ~~~~~l~~L~~L~l~~c~  463 (596)
                      ..++.+++|++|++++|.
T Consensus       278 ~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTSTTCCEEEEECTTSCB
T ss_pred             HHhccCCceEEEecCCCc
Confidence            567889999999999987

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.34  E-value=4.4e-12  Score=116.68  Aligned_cols=160  Identities=21%  Similarity=0.207  Sum_probs=112.8

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+  .++|++|++++|.++.+|. .++.+++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. +
T Consensus        21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~   96 (208)
T 2o6s_A           21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF   96 (208)
T ss_dssp             SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence            556544  4589999999999998775 4688999999999998 67777765 6889999999999998 7777765 5


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      +++++|++|++.++...      .+                                                 ....+.
T Consensus        97 ~~l~~L~~L~L~~N~l~------~~-------------------------------------------------~~~~~~  121 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQ------SL-------------------------------------------------PDGVFD  121 (208)
T ss_dssp             TTCTTCCEEECCSSCCC------CC-------------------------------------------------CTTTTT
T ss_pred             cCccCCCEEEcCCCcCc------cc-------------------------------------------------CHhHhc
Confidence            77777777765332211      00                                                 011123


Q ss_pred             CCCCccEEEEeccCCCCCCCC-CCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCcc
Q 007616          315 PHYGLKELKVRGYGGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLE  384 (596)
Q Consensus       315 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~  384 (596)
                      .+++|+.|++++|....++.. +.  .+++|+.|++++|.      ..+.+++|+.|+++.+...+.++..
T Consensus       122 ~l~~L~~L~l~~N~l~~~~~~~~~--~l~~L~~L~l~~N~------~~~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          122 KLTQLKDLRLYQNQLKSVPDGVFD--RLTSLQYIWLHDNP------WDCTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTT--TCTTCCEEECCSCC------BCCCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             cCCcCCEEECCCCccceeCHHHhc--cCCCccEEEecCCC------eecCCCCHHHHHHHHHhCCceeecc
Confidence            456777778877777666654 33  67888888888885      3345677888888877655555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=3.2e-12  Score=134.78  Aligned_cols=167  Identities=19%  Similarity=0.191  Sum_probs=102.0

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+|..+  +++|++|++++|.|+.+|   +.+++|++|++++| .+..+|. +++  +|++|++++|. ++.+|.   .+
T Consensus        73 ~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l  139 (571)
T 3cvr_A           73 SLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LP  139 (571)
T ss_dssp             CCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CC
T ss_pred             ccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc-CCCCCC---cC
Confidence            345544  256777777777777776   34677777777777 5666666 554  77777777776 666666   45


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY  317 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (596)
                      ++|++|++.++....      ++.                            .+++|+.|+++.|....  .+. +.  +
T Consensus       140 ~~L~~L~Ls~N~l~~------lp~----------------------------~l~~L~~L~Ls~N~L~~--lp~-l~--~  180 (571)
T 3cvr_A          140 ALLEYINADNNQLTM------LPE----------------------------LPTSLEVLSVRNNQLTF--LPE-LP--E  180 (571)
T ss_dssp             TTCCEEECCSSCCSC------CCC----------------------------CCTTCCEEECCSSCCSC--CCC-CC--T
T ss_pred             ccccEEeCCCCccCc------CCC----------------------------cCCCcCEEECCCCCCCC--cch-hh--C
Confidence            666666654332211      100                            23466667776664322  222 32  6


Q ss_pred             CccEEEEeccCCCCCCCCCCCCCCCCc-------cEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeC
Q 007616          318 GLKELKVRGYGGTKFPAWLGQSSFENL-------VVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVG  382 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~  382 (596)
                      +|+.|++++|.+..+|. +.  .  +|       +.|++++|. ++.+| .+..+++|+.|++++|...+.++
T Consensus       181 ~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          181 SLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             TCCEEECCSSCCSSCCC-CC------------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             CCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            78888888888777776 43  1  55       888888876 44566 46668888888888776444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.32  E-value=9.7e-13  Score=125.69  Aligned_cols=165  Identities=18%  Similarity=0.207  Sum_probs=125.7

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      .+.++..++++++.++.++ .+..+++|++|++++| .+..+| .++.+++|++|++++|. +..+|. ++++++|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEE
Confidence            5777888999999999888 6889999999999999 888887 69999999999999998 888877 88888888887


Q ss_pred             cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616          245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV  324 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  324 (596)
                      +.++....      +                                                   ..+.. ++|+.|++
T Consensus        92 L~~N~l~~------l---------------------------------------------------~~~~~-~~L~~L~L  113 (263)
T 1xeu_A           92 VNRNRLKN------L---------------------------------------------------NGIPS-ACLSRLFL  113 (263)
T ss_dssp             CCSSCCSC------C---------------------------------------------------TTCCC-SSCCEEEC
T ss_pred             CCCCccCC------c---------------------------------------------------Ccccc-CcccEEEc
Confidence            54332110      0                                                   00111 57999999


Q ss_pred             eccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      ++|....++. +.  .+++|+.|++++|. ++.++.++.+++|+.|++++|. +..+ ..+      ..+++|+.|++++
T Consensus       114 ~~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~-i~~~-~~l------~~l~~L~~L~l~~  181 (263)
T 1xeu_A          114 DNNELRDTDS-LI--HLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNE-ITNT-GGL------TRLKKVNWIDLTG  181 (263)
T ss_dssp             CSSCCSBSGG-GT--TCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSC-CCBC-TTS------TTCCCCCEEEEEE
T ss_pred             cCCccCCChh-hc--CcccccEEECCCCc-CCCChHHccCCCCCEEECCCCc-Ccch-HHh------ccCCCCCEEeCCC
Confidence            9998877764 44  68899999999987 5566778889999999999875 3333 112      2266777776665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.31  E-value=3.8e-12  Score=135.69  Aligned_cols=154  Identities=20%  Similarity=0.188  Sum_probs=118.5

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKL  237 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l  237 (596)
                      .+| .+..+++|+.|+|++|.+..+|+ +..+++|++|+|++| .+..+| .++.+++|++|++++|. +..+| .+..+
T Consensus        57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l  130 (605)
T 1m9s_A           57 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHL  130 (605)
T ss_dssp             CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGGGC
T ss_pred             CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC-CCCCc-cccCC
Confidence            344 57899999999999999999887 999999999999999 787776 69999999999999999 77764 58899


Q ss_pred             cccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCC
Q 007616          238 TSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHY  317 (596)
Q Consensus       238 ~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  317 (596)
                      ++|+.|++.++.....   .                             .+..+++|+.|+++.+...... +  +..++
T Consensus       131 ~~L~~L~Ls~N~l~~l---~-----------------------------~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~  175 (605)
T 1m9s_A          131 PQLESLYLGNNKITDI---T-----------------------------VLSRLTKLDTLSLEDNQISDIV-P--LAGLT  175 (605)
T ss_dssp             TTCSEEECCSSCCCCC---G-----------------------------GGGSCTTCSEEECCSSCCCCCG-G--GTTCT
T ss_pred             CccCEEECCCCccCCc---h-----------------------------hhcccCCCCEEECcCCcCCCch-h--hccCC
Confidence            9999998755433211   1                             2445667777777766532221 1  66778


Q ss_pred             CccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC
Q 007616          318 GLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC  355 (596)
Q Consensus       318 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  355 (596)
                      +|+.|++++|.+..+|. +.  .+++|+.|++++|...
T Consensus       176 ~L~~L~Ls~N~i~~l~~-l~--~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          176 KLQNLYLSKNHISDLRA-LA--GLKNLDVLELFSQECL  210 (605)
T ss_dssp             TCCEEECCSSCCCBCGG-GT--TCTTCSEEECCSEEEE
T ss_pred             CCCEEECcCCCCCCChH-Hc--cCCCCCEEEccCCcCc
Confidence            88888888888777654 33  6788888888888743

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=1.3e-11  Score=112.31  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.+.+..+.+.         .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++.++
T Consensus        44 ~~L~~L~l~~n~i~---------~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           44 NSLTYITLANINVT---------DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HTCCEEEEESSCCS---------CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             CCccEEeccCCCcc---------ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            45677777765444         456 5888999999999999887765 688999999999999944445788899999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEe
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVV  248 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~  248 (596)
                      +|++|++++|......|..++.+++|++|++.++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence            9999999999944457777888999988876443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.29  E-value=1.6e-11  Score=112.80  Aligned_cols=161  Identities=19%  Similarity=0.111  Sum_probs=115.8

Q ss_pred             cEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCCcEE
Q 007616          170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFV  247 (596)
Q Consensus       170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~  247 (596)
                      +.++.+++.++.+|..+  .++|++|++++| .+..+|.. ++++++|++|++++|. ++.+|.. +..+++|++|++.+
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCC
Confidence            56788888899888765  469999999999 67777764 7899999999999998 7777765 57778888776533


Q ss_pred             eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616          248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY  327 (596)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  327 (596)
                      +...      .                                                 .....+..+++|+.|++++|
T Consensus        86 n~l~------~-------------------------------------------------~~~~~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           86 NQLQ------S-------------------------------------------------LPNGVFDKLTQLKELALNTN  110 (208)
T ss_dssp             SCCC------C-------------------------------------------------CCTTTTTTCTTCCEEECCSS
T ss_pred             CcCC------c-------------------------------------------------cCHhHhcCccCCCEEEcCCC
Confidence            2211      0                                                 00112344577888888888


Q ss_pred             CCCCCCCC-CCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          328 GGTKFPAW-LGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       328 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      ....++.. +.  .+++|+.|++++|...+..+ .++.+++|+.|++++|+..        +     .+++|+.|.++.
T Consensus       111 ~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~-----~~~~l~~L~~~~  174 (208)
T 2o6s_A          111 QLQSLPDGVFD--KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------C-----TCPGIRYLSEWI  174 (208)
T ss_dssp             CCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------C-----CTTTTHHHHHHH
T ss_pred             cCcccCHhHhc--cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------c-----CCCCHHHHHHHH
Confidence            87777664 33  68899999999987443333 3778999999999987422        1     166777776665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.28  E-value=2e-11  Score=113.09  Aligned_cols=84  Identities=20%  Similarity=0.310  Sum_probs=62.6

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++|+.|++++|.|+.+|. .+..+++|++|++++| .+..+ |..+.++++|++|++++|. +..+|.+ +
T Consensus        25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f  100 (220)
T 2v9t_B           25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF  100 (220)
T ss_dssp             SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTT
T ss_pred             cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHc
Confidence            5666554  578888888888887765 6788888888888888 55555 6678888888888888888 7777765 4


Q ss_pred             cCCcccCCCCc
Q 007616          235 GKLTSLRTLAK  245 (596)
Q Consensus       235 ~~l~~L~~L~~  245 (596)
                      ..+++|++|++
T Consensus       101 ~~l~~L~~L~L  111 (220)
T 2v9t_B          101 EGLFSLQLLLL  111 (220)
T ss_dssp             TTCTTCCEEEC
T ss_pred             cCCCCCCEEEC
Confidence            55666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.28  E-value=2.7e-11  Score=113.10  Aligned_cols=71  Identities=24%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPL  232 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~  232 (596)
                      .+|..+.  ++|++|++++|.++.+ |..+..+++|++|++++| .+..+|.. ++.+++|++|++++|. ++.+|.
T Consensus        33 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~  105 (229)
T 3e6j_A           33 SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPS  105 (229)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred             ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc-CCccCh
Confidence            4555443  5677777777777655 455666777777777776 55666543 4666777777777666 555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.26  E-value=2.2e-11  Score=112.89  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=46.3

Q ss_pred             cCcccccccCCCcEEeecCCCccccc--cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLS--ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-  233 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-  233 (596)
                      .+|..+.  ..+++|++++|.++.++  ..++.+++|++|++++| .+..++. .++++++|++|++++|. +..+|.+ 
T Consensus        25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  100 (220)
T 2v70_A           25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNR-LENVQHKM  100 (220)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred             cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence            3454432  24566666666666553  23566666666666666 4555543 46666666666666666 4444433 


Q ss_pred             ccCCcccCCCC
Q 007616          234 IGKLTSLRTLA  244 (596)
Q Consensus       234 l~~l~~L~~L~  244 (596)
                      ++.+++|++|+
T Consensus       101 ~~~l~~L~~L~  111 (220)
T 2v70_A          101 FKGLESLKTLM  111 (220)
T ss_dssp             GTTCSSCCEEE
T ss_pred             hcCCcCCCEEE
Confidence            44444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.26  E-value=8.6e-14  Score=147.53  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             ccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeec
Q 007616          293 KLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVI  372 (596)
Q Consensus       293 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L  372 (596)
                      .|+.|+++.+....  .+ .+..+++|+.|++++|.+..+|..++  .+++|+.|++++|.. +.+|.++.+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~~--lp-~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l-~~lp~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLRALPPALA--ALRCLEVLQASDNAL-ENVDGVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCCCCCGGGG--GCTTCCEEECCSSCC-CCCGGGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC--Cc-CccccccCcEeecCcccccccchhhh--cCCCCCEEECCCCCC-CCCcccCCCCCCcEEEC
Confidence            36667776664322  22 25666777777777777777776665  677777777777763 34667777777777777


Q ss_pred             cCccCceEe--CccccCCCCCCCCCCcceeeccc
Q 007616          373 KGMAKVKSV--GLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       373 ~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      ++|. +..+  +..+..      +++|+.|++++
T Consensus       516 s~N~-l~~~~~p~~l~~------l~~L~~L~L~~  542 (567)
T 1dce_A          516 CNNR-LQQSAAIQPLVS------CPRLVLLNLQG  542 (567)
T ss_dssp             CSSC-CCSSSTTGGGGG------CTTCCEEECTT
T ss_pred             CCCC-CCCCCCcHHHhc------CCCCCEEEecC
Confidence            7754 3333  333333      66677666665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.24  E-value=3.7e-11  Score=111.36  Aligned_cols=146  Identities=16%  Similarity=0.206  Sum_probs=99.1

Q ss_pred             cEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccc-cccccCCcccCCCCcEE
Q 007616          170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAKFV  247 (596)
Q Consensus       170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~~~~  247 (596)
                      +.++++++.++.+|..+.  ++|+.|++++| .+..+|. .+..+++|++|++++|. +..+ |..+..+++|++|++.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCC
Confidence            678999999999998765  79999999999 7777765 68999999999999999 6665 66688888888887643


Q ss_pred             eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616          248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY  327 (596)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  327 (596)
                      +...      .++                                                 ...+..+++|+.|++++|
T Consensus        90 N~l~------~l~-------------------------------------------------~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           90 NKIT------ELP-------------------------------------------------KSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             SCCC------CCC-------------------------------------------------TTTTTTCTTCCEEECCSS
T ss_pred             CcCC------ccC-------------------------------------------------HhHccCCCCCCEEECCCC
Confidence            3221      000                                                 011223455666666666


Q ss_pred             CCCCCC-CCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          328 GGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       328 ~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      .+..++ ..+.  .+++|+.|++++|...+..+ .++.+++|+.|++++|+
T Consensus       115 ~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          115 KINCLRVDAFQ--DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEeCHHHcC--CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            655553 2333  56677777777766433322 35666777777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.24  E-value=1.7e-11  Score=123.00  Aligned_cols=159  Identities=21%  Similarity=0.274  Sum_probs=107.3

Q ss_pred             cCcccccccCCCcEEeecCCCccccccc-cc-cCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSES-VS-TLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-  233 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~-~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-  233 (596)
                      .+|..+.  ..+++|+|++|.|+.++.. +. .+++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.. 
T Consensus        32 ~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  107 (361)
T 2xot_A           32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFL  107 (361)
T ss_dssp             SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred             ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHH
Confidence            5666553  4688999999999987654 45 8899999999998 6776664 58899999999999998 7777654 


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhcc
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEML  313 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  313 (596)
                      +..+++|++|++.++...                                                       ...+..+
T Consensus       108 ~~~l~~L~~L~L~~N~i~-------------------------------------------------------~~~~~~~  132 (361)
T 2xot_A          108 FSDLQALEVLLLYNNHIV-------------------------------------------------------VVDRNAF  132 (361)
T ss_dssp             TTTCTTCCEEECCSSCCC-------------------------------------------------------EECTTTT
T ss_pred             hCCCcCCCEEECCCCccc-------------------------------------------------------EECHHHh
Confidence            677777777765433211                                                       0011223


Q ss_pred             CCCCCccEEEEeccCCCCCCCCCCC--CCCCCccEEEEecCCCCCCCC--CCCCCCc--cceeeccCcc
Q 007616          314 KPHYGLKELKVRGYGGTKFPAWLGQ--SSFENLVVLRFKNCNQCTTLP--SVGHLPS--LKNLVIKGMA  376 (596)
Q Consensus       314 ~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~l~--~l~~l~~--L~~L~L~~~~  376 (596)
                      ..+++|+.|++++|.+..+|.....  ..+++|+.|++++|. ++.++  .++.++.  ++.|++.+|+
T Consensus       133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEecCCC
Confidence            4456777777777777777655321  257788888888876 34444  3455555  3777887764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.22  E-value=5.5e-11  Score=110.96  Aligned_cols=146  Identities=21%  Similarity=0.210  Sum_probs=101.5

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc-ccCCcccCCCCcE
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKF  246 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~  246 (596)
                      -+.++.+++.++.+|..+.  ++|++|++++| .+..+ |..++.+++|++|++++|. ++.+|.. +..+++|++|++.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECC
Confidence            5568888889999987664  89999999999 55555 6678899999999999998 7888765 5778888887754


Q ss_pred             EeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEec
Q 007616          247 VVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRG  326 (596)
Q Consensus       247 ~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  326 (596)
                      ++....      +                                                 ....+..+++|+.|++++
T Consensus        97 ~N~l~~------l-------------------------------------------------~~~~~~~l~~L~~L~Ls~  121 (229)
T 3e6j_A           97 TNQLTV------L-------------------------------------------------PSAVFDRLVHLKELFMCC  121 (229)
T ss_dssp             SSCCCC------C-------------------------------------------------CTTTTTTCTTCCEEECCS
T ss_pred             CCcCCc------c-------------------------------------------------ChhHhCcchhhCeEeccC
Confidence            332210      0                                                 001123345667777777


Q ss_pred             cCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCcc
Q 007616          327 YGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       327 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~  376 (596)
                      |.+..+|..+.  .+++|+.|++++|.. +.++  .++.+++|+.|++.+|+
T Consensus       122 N~l~~lp~~~~--~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          122 NKLTELPRGIE--RLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             SCCCSCCTTGG--GCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CcccccCcccc--cCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence            77666766654  667777777777763 3333  36667777777777765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.22  E-value=1.8e-11  Score=129.11  Aligned_cols=162  Identities=18%  Similarity=0.135  Sum_probs=120.1

Q ss_pred             CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCC
Q 007616          134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL  213 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L  213 (596)
                      ..+++.+.+..+.+.         .+|   ..+++|++|++++|.++.+|. ++.  +|++|++++| .+..+|.   .+
T Consensus        79 ~~~L~~L~Ls~N~l~---------~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N-~l~~lp~---~l  139 (571)
T 3cvr_A           79 PPQITVLEITQNALI---------SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN-QLTMLPE---LP  139 (571)
T ss_dssp             CTTCSEEECCSSCCS---------CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS-CCSCCCC---CC
T ss_pred             cCCCCEEECcCCCCc---------ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC-cCCCCCC---cC
Confidence            356777777666544         466   457899999999999999998 765  9999999999 7888987   68


Q ss_pred             CccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccc
Q 007616          214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKK  293 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~  293 (596)
                      ++|++|++++|. ++.+|.   .+++|++|++.++.......   +                             .  ++
T Consensus       140 ~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~---l-----------------------------~--~~  181 (571)
T 3cvr_A          140 ALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE---L-----------------------------P--ES  181 (571)
T ss_dssp             TTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC---C-----------------------------C--TT
T ss_pred             ccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch---h-----------------------------h--CC
Confidence            999999999999 888887   57888888876554322111   1                             1  45


Q ss_pred             cccccccccCCcchhhhhccCCCCCc-------cEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC
Q 007616          294 LEALSPKWGNKIQTCVFEMLKPHYGL-------KELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP  359 (596)
Q Consensus       294 L~~L~l~~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~  359 (596)
                      |+.|+++.+...  .++. +..  +|       +.|++++|.+..+|..+.  .+++|+.|++++|...+.+|
T Consensus       182 L~~L~Ls~N~L~--~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          182 LEALDVSTNLLE--SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             CCEEECCSSCCS--SCCC-CC----------CCEEEECCSSCCCCCCGGGG--GSCTTEEEECCSSSCCHHHH
T ss_pred             CCEEECcCCCCC--chhh-HHH--hhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEeeCCcCCCcCH
Confidence            666666665432  1222 222  55       999999999999999887  69999999999998665544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.21  E-value=7.4e-11  Score=109.30  Aligned_cols=147  Identities=17%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEccccccccccCC--cccCCCccceeecCCCCccccccc-cccCCcccCCCCc
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP--DIGNLVNLRHLKDSHSNLLEEMPL-RIGKLTSLRTLAK  245 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~-~l~~l~~L~~L~~  245 (596)
                      -+.++++++.++.+|..+.  ..+++|++++| .+..++.  .++++++|++|++++|. ++.++. .++.+++|++|++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CCEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEEC
Confidence            3589999999999998764  46789999999 6777743  37899999999999998 777766 5888888888876


Q ss_pred             EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616          246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR  325 (596)
Q Consensus       246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  325 (596)
                      .++....                                                       .....+..+++|+.|+++
T Consensus        89 s~N~l~~-------------------------------------------------------~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           89 TSNRLEN-------------------------------------------------------VQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSSCCCC-------------------------------------------------------CCGGGGTTCSSCCEEECT
T ss_pred             CCCccCc-------------------------------------------------------cCHhHhcCCcCCCEEECC
Confidence            4332210                                                       001122334556666666


Q ss_pred             ccCCCCC-CCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCcc
Q 007616          326 GYGGTKF-PAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMA  376 (596)
Q Consensus       326 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~  376 (596)
                      +|.+..+ |..+.  .+++|+.|++++|...+..| .++.+++|+.|++++|+
T Consensus       114 ~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          114 SNRITCVGNDSFI--GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             TSCCCCBCTTSST--TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCcCCeECHhHcC--CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            6665555 33343  56777777777776444334 56677777777777764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.20  E-value=1.4e-11  Score=108.97  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             cCCCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc-ccccccCCcccCC
Q 007616          166 LKHLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLRT  242 (596)
Q Consensus       166 l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l~~l~~L~~  242 (596)
                      .++|++|++++|.++  .+|..+..+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCE
Confidence            356666777766666  66666666667777777666 45555 556666667777776666 444 4444545666666


Q ss_pred             CCcE
Q 007616          243 LAKF  246 (596)
Q Consensus       243 L~~~  246 (596)
                      |++.
T Consensus       100 L~Ls  103 (168)
T 2ell_A          100 LNLS  103 (168)
T ss_dssp             EECB
T ss_pred             Eecc
Confidence            6543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.13  E-value=5.7e-11  Score=105.08  Aligned_cols=106  Identities=24%  Similarity=0.294  Sum_probs=87.3

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccc-cCCccc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-LFPDIG  211 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~  211 (596)
                      .+.+++.+.+..+.+..     +  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++
T Consensus        22 ~~~~L~~L~l~~n~l~~-----~--~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~   92 (168)
T 2ell_A           22 TPAAVRELVLDNCKSND-----G--KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAE   92 (168)
T ss_dssp             CTTSCSEEECCSCBCBT-----T--BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHH
T ss_pred             CcccCCEEECCCCCCCh-----h--hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCC-cCchHHHHHHh
Confidence            35678888888776541     0  5778889999999999999999988 78899999999999999 5655 777777


Q ss_pred             CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEe
Q 007616          212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVV  248 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~  248 (596)
                      ++++|++|++++|. +..+|  ..++.+++|++|++.++
T Consensus        93 ~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N  130 (168)
T 2ell_A           93 KLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC  130 (168)
T ss_dssp             HCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred             hCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence            89999999999998 88876  56888888888876443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.09  E-value=3.6e-11  Score=104.00  Aligned_cols=105  Identities=23%  Similarity=0.315  Sum_probs=79.8

Q ss_pred             CCceeEEEEeccccc-ccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccc-cCCccc
Q 007616          134 SRNLRHLSYLTSRFD-GIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKK-LFPDIG  211 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~-~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~-lp~~i~  211 (596)
                      +.+++.+.+..+... +        .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++| .+.. +|..++
T Consensus        16 ~~~l~~L~l~~n~l~~~--------~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~   85 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEG--------KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAE   85 (149)
T ss_dssp             GGGCSEEECTTCBCBTT--------BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHH
T ss_pred             CccCeEEEccCCcCChh--------HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhh
Confidence            356677777666544 2        5677778888889999988888877 67888888999999888 5555 777677


Q ss_pred             CCCccceeecCCCCcccccc--ccccCCcccCCCCcEEec
Q 007616          212 NLVNLRHLKDSHSNLLEEMP--LRIGKLTSLRTLAKFVVG  249 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~~~~~~  249 (596)
                      .+++|++|++++|. ++.+|  ..++.+++|++|++.++.
T Consensus        86 ~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           86 KCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             HCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             hCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence            78888999998888 66654  668888888888765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.08  E-value=1.7e-10  Score=115.76  Aligned_cols=169  Identities=18%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-cc-CCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IG-NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  245 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~-~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~  245 (596)
                      -++++++++.++.+|..+.  .++++|+|++| .+..+|.. +. ++++|++|++++|. +..++.. +..+++|++|++
T Consensus        20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence            3689999999999998764  46999999999 77777765 55 89999999999998 7777754 888888888875


Q ss_pred             EEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEe
Q 007616          246 FVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVR  325 (596)
Q Consensus       246 ~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  325 (596)
                      .++...      .                                                 .....+..+++|+.|+++
T Consensus        96 s~N~l~------~-------------------------------------------------~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           96 SSNHLH------T-------------------------------------------------LDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSSCCC------E-------------------------------------------------ECTTTTTTCTTCCEEECC
T ss_pred             CCCcCC------c-------------------------------------------------CCHHHhCCCcCCCEEECC
Confidence            433210      0                                                 001123446788889999


Q ss_pred             ccCCCCCC-CCCCCCCCCCccEEEEecCCCCCCCCC--C---CCCCccceeeccCccCceEeCccccCCCCCCCCCC--c
Q 007616          326 GYGGTKFP-AWLGQSSFENLVVLRFKNCNQCTTLPS--V---GHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPS--L  397 (596)
Q Consensus       326 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~l~~--l---~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~--L  397 (596)
                      +|.+..++ ..+.  .+++|+.|++++|. ++.+|.  +   +.+++|+.|+|++|. ++.++......     ++.  +
T Consensus       121 ~N~i~~~~~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~-----l~~~~l  191 (361)
T 2xot_A          121 NNHIVVVDRNAFE--DMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQK-----LPAWVK  191 (361)
T ss_dssp             SSCCCEECTTTTT--TCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHH-----SCHHHH
T ss_pred             CCcccEECHHHhC--CcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhh-----ccHhhc
Confidence            98877664 4454  78999999999997 445552  3   679999999999864 55554322111     454  3


Q ss_pred             ceeecccC
Q 007616          398 ETLCFEDM  405 (596)
Q Consensus       398 ~~L~l~~~  405 (596)
                      +.|++.+.
T Consensus       192 ~~l~l~~N  199 (361)
T 2xot_A          192 NGLYLHNN  199 (361)
T ss_dssp             TTEECCSS
T ss_pred             ceEEecCC
Confidence            67777763

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.07  E-value=9.2e-11  Score=127.38  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             hhhHHHHHHhhhhhhhhHH-HHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCcccee
Q 007616           15 FKGFRGALGVSYYCLLSYV-KRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQS   93 (596)
Q Consensus        15 ~~~i~~~L~lSY~~L~~~l-k~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~   93 (596)
                      .+.|..+|++||+.||+++ |.||+|||+||+++.|+++.++.+|+++|           ++.++.++++|+++||++..
T Consensus       352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d  420 (1221)
T 1vt4_I          352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ  420 (1221)
T ss_dssp             CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe
Confidence            3679999999999999998 99999999999999999999999999987           13588899999999999985


Q ss_pred             cCCCCeEEEcchHHHHHH
Q 007616           94 KIDASRFLMHDLIHDLAC  111 (596)
Q Consensus        94 ~~~~~~~~mhd~i~~l~~  111 (596)
                      . ...+++|||++++++.
T Consensus       421 ~-~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          421 P-KESTISIPSIYLELKV  437 (1221)
T ss_dssp             S-SSSEEBCCCHHHHHHH
T ss_pred             C-CCCEEEehHHHHHHhc
Confidence            3 5678999999999763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=3.8e-11  Score=103.84  Aligned_cols=82  Identities=15%  Similarity=0.126  Sum_probs=71.4

Q ss_pred             ccCCCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc-ccccccCCcccC
Q 007616          165 ELKHLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE-MPLRIGKLTSLR  241 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~l~~l~~L~  241 (596)
                      ..++|+.|++++|.++  .+|..++.+++|++|++++| .+..+ ..++.+++|++|++++|. +.. +|..++.+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCC
Confidence            4578999999999998  89998899999999999999 77777 779999999999999999 665 777777899999


Q ss_pred             CCCcEEec
Q 007616          242 TLAKFVVG  249 (596)
Q Consensus       242 ~L~~~~~~  249 (596)
                      +|++.++.
T Consensus        92 ~L~ls~N~   99 (149)
T 2je0_A           92 HLNLSGNK   99 (149)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCc
Confidence            99875443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.07  E-value=1.2e-10  Score=103.92  Aligned_cols=79  Identities=16%  Similarity=0.171  Sum_probs=35.9

Q ss_pred             ccCCCcEEeecCCCccccccccccCC-cCcEEEccccccccccCCcccCCCccceeecCCCCccccccccc-cCCcccCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLY-NLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRI-GKLTSLRT  242 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l-~~l~~L~~  242 (596)
                      .+.+|++|++++|.++.+|. +..+. +|++|++++| .+..+ ..++.+++|++|++++|. +..+|+++ +.+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCE
Confidence            34445555555554444432 22222 4555555554 34333 334445555555555554 44444332 44444554


Q ss_pred             CCcEE
Q 007616          243 LAKFV  247 (596)
Q Consensus       243 L~~~~  247 (596)
                      |++.+
T Consensus        93 L~L~~   97 (176)
T 1a9n_A           93 LILTN   97 (176)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            44433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.06  E-value=3.4e-11  Score=131.72  Aligned_cols=82  Identities=28%  Similarity=0.303  Sum_probs=37.4

Q ss_pred             ccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCccc
Q 007616          161 NDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL  240 (596)
Q Consensus       161 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L  240 (596)
                      ..+..++.|++|+|++|.+..+|..+..+++|++|+|++| .+..+|..+++|++|++|+|++|. +..+|..+++|++|
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQL  295 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTC
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCC
Confidence            3344444455555555544444444444555555555544 344444444455555555555544 34444444444444


Q ss_pred             CCCC
Q 007616          241 RTLA  244 (596)
Q Consensus       241 ~~L~  244 (596)
                      ++|+
T Consensus       296 ~~L~  299 (727)
T 4b8c_D          296 KYFY  299 (727)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            4443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.06  E-value=4.8e-12  Score=115.37  Aligned_cols=91  Identities=26%  Similarity=0.207  Sum_probs=79.7

Q ss_pred             ccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          157 HELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       157 ~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      ..+|..++.+++|++|++++|.++.+| .++.+++|++|++++| .+..+|..++.+++|++|++++|. +..+| .++.
T Consensus        38 ~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~  113 (198)
T 1ds9_A           38 EKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GIEK  113 (198)
T ss_dssp             CCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHH
T ss_pred             hhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-cccc
Confidence            367778999999999999999999988 8899999999999999 788899888888999999999998 77777 6888


Q ss_pred             CcccCCCCcEEeccC
Q 007616          237 LTSLRTLAKFVVGKG  251 (596)
Q Consensus       237 l~~L~~L~~~~~~~~  251 (596)
                      +++|++|++.++...
T Consensus       114 l~~L~~L~l~~N~i~  128 (198)
T 1ds9_A          114 LVNLRVLYMSNNKIT  128 (198)
T ss_dssp             HHHSSEEEESEEECC
T ss_pred             CCCCCEEECCCCcCC
Confidence            899999988777654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.02  E-value=6.3e-10  Score=100.57  Aligned_cols=63  Identities=19%  Similarity=0.248  Sum_probs=33.8

Q ss_pred             CCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccc
Q 007616          167 KHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMP  231 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp  231 (596)
                      ++|++|++++|.++.+|..+..+++|++|++++| .+..++. .+.++++|++|++++|. +..+|
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~   94 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR-LRCIP   94 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc-cCEeC
Confidence            3555555555555555555555555555555555 4444432 35555555555555555 44433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.99  E-value=2.4e-09  Score=105.85  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=47.1

Q ss_pred             cCCCcEEeecCCCcc--------------------ccc-ccccc--------CCcCcEEEccccccccccCCc-ccCCCc
Q 007616          166 LKHLRYLDFSHTAIE--------------------VLS-ESVST--------LYNLQTLILEYCYRLKKLFPD-IGNLVN  215 (596)
Q Consensus       166 l~~L~~L~L~~~~i~--------------------~lp-~~i~~--------l~~L~~L~L~~~~~~~~lp~~-i~~L~~  215 (596)
                      +++|++|||++|.+.                    .+| ..|.+        +.+|+.|++..  .++.+++. +.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence            778999999998887                    232 23445        77777777766  35555543 667777


Q ss_pred             cceeecCCCCcccccccc-ccCCcccCCC
Q 007616          216 LRHLKDSHSNLLEEMPLR-IGKLTSLRTL  243 (596)
Q Consensus       216 L~~L~l~~~~~l~~lp~~-l~~l~~L~~L  243 (596)
                      |+.+++++|. +..++.. +..+.++..+
T Consensus       126 L~~l~l~~n~-i~~i~~~aF~~~~~l~~l  153 (329)
T 3sb4_A          126 LKICQIRKKT-APNLLPEALADSVTAIFI  153 (329)
T ss_dssp             CCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred             cceEEcCCCC-ccccchhhhcCCCceEEe
Confidence            7777777776 5555544 5444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.99  E-value=7.3e-10  Score=100.16  Aligned_cols=71  Identities=17%  Similarity=0.305  Sum_probs=32.1

Q ss_pred             cEEeecCCCccccccccccCCcCcEEEccccccccccCCc--ccCCCccceeecCCCCccccc-cccccCCcccCCCC
Q 007616          170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD--IGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLA  244 (596)
Q Consensus       170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~  244 (596)
                      ++++++++.++.+|..+..  +|++|++++| .+..+|..  ++.+++|++|++++|. ++.+ |..++.+++|++|+
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEE
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEE
Confidence            4445555555555443322  4555555555 44444332  4455555555555554 3332 33344444444443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.98  E-value=8.8e-10  Score=99.63  Aligned_cols=107  Identities=30%  Similarity=0.435  Sum_probs=89.9

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cc
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DI  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i  210 (596)
                      ++..++.+.+..+.+.         .+|..|..+++|++|++++|.|+.++ ..|..+++|++|++++| .+..+|. .+
T Consensus        29 ~~~~l~~L~L~~n~i~---------~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f   98 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFT---------LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTF   98 (193)
T ss_dssp             CCTTCCEEECCSSCCC---------SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTT
T ss_pred             CCCCCCEEECCCCcCc---------hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHh
Confidence            4456777777766554         67888999999999999999999886 46899999999999999 6777665 59


Q ss_pred             cCCCccceeecCCCCcccccccc-ccCCcccCCCCcEEecc
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~~  250 (596)
                      +.+++|++|++++|. +..+|.+ +..+++|++|++.++..
T Consensus        99 ~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           99 DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            999999999999999 8888876 88899999998765544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.96  E-value=4.8e-10  Score=122.61  Aligned_cols=105  Identities=19%  Similarity=0.219  Sum_probs=91.2

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      ..++.|.+..+.+.         .+|..+..+++|++|+|++|.|+.+|..|+.+++|++|+|++| .+..+|..+++|+
T Consensus       224 ~~L~~L~Ls~n~l~---------~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~  293 (727)
T 4b8c_D          224 QLWHALDLSNLQIF---------NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF  293 (727)
T ss_dssp             CCCCEEECTTSCCS---------CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred             CCCcEEECCCCCCC---------CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence            34555555544433         6888888999999999999999999999999999999999999 7889999999999


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~  250 (596)
                      +|++|++++|. ++.+|.+++++++|++|++.++..
T Consensus       294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence            99999999998 889999999999999999765544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=7.9e-10  Score=117.12  Aligned_cols=87  Identities=21%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             cCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccc--ccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEM--PLRIG  235 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~l--p~~l~  235 (596)
                      .+|. ++.+++|++|++++|.++.+|..++.+++|++|+|++| .++.+| .++++++|++|++++|. +..+  |..++
T Consensus       455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~  530 (567)
T 1dce_A          455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLV  530 (567)
T ss_dssp             SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGG
T ss_pred             CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHh
Confidence            3444 56666666666666666666666666666666666666 555555 56666666666666665 4444  55566


Q ss_pred             CCcccCCCCcEEe
Q 007616          236 KLTSLRTLAKFVV  248 (596)
Q Consensus       236 ~l~~L~~L~~~~~  248 (596)
                      .+++|++|++.++
T Consensus       531 ~l~~L~~L~L~~N  543 (567)
T 1dce_A          531 SCPRLVLLNLQGN  543 (567)
T ss_dssp             GCTTCCEEECTTS
T ss_pred             cCCCCCEEEecCC
Confidence            6666666655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.94  E-value=8e-10  Score=98.42  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=82.9

Q ss_pred             CCceeEEEEecccccccccccccccCcccccccC-CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcc-c
Q 007616          134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELK-HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-G  211 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~  211 (596)
                      +.+++.+.+..+.+.         .+|. +..+. +|++|++++|.++.+ +.++.+++|++|++++| .+..+|+.+ +
T Consensus        18 ~~~L~~L~l~~n~l~---------~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~   85 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP---------VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQ   85 (176)
T ss_dssp             TTSCEEEECTTSCCC---------SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHH
T ss_pred             cCCceEEEeeCCCCc---------hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhh
Confidence            456677777766554         3433 44454 999999999999988 67899999999999999 788888765 8


Q ss_pred             CCCccceeecCCCCccccccc--cccCCcccCCCCcEEec
Q 007616          212 NLVNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVG  249 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~  249 (596)
                      .+++|++|++++|. ++.+|.  .++.+++|++|++.++.
T Consensus        86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC
Confidence            99999999999998 788887  68888999988875544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.93  E-value=1.5e-09  Score=98.00  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             CceeEEEEecccccccccccccccCcc--cccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCC-cc
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPN--DIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFP-DI  210 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~-~i  210 (596)
                      ..++.+.+..+.+.         .+|.  .++.+++|++|++++|.++.+ |..++.+++|++|++++| .+..+|. .+
T Consensus        29 ~~l~~L~l~~n~i~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~   98 (192)
T 1w8a_A           29 LHTTELLLNDNELG---------RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMF   98 (192)
T ss_dssp             TTCSEEECCSCCCC---------SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSS
T ss_pred             CCCCEEECCCCcCC---------ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHh
Confidence            35555655555443         3333  267777777777777777755 556777777777777777 5555543 36


Q ss_pred             cCCCccceeecCCCCccccccccccCCcccCCCCcEEecc
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~  250 (596)
                      +.+++|++|++++|...+..|..++.+++|++|++.++..
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            7777777777777773333355577777777776654443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.93  E-value=1.2e-09  Score=96.84  Aligned_cols=89  Identities=21%  Similarity=0.283  Sum_probs=77.6

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++|++|++++|.++.+ |..++.+++|++|+|++| .+..+|.. ++++++|++|++++|. +..+|.+ +
T Consensus        26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~  101 (174)
T 2r9u_A           26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAF  101 (174)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHh
Confidence            6777664  8999999999999987 567899999999999999 88888876 5899999999999998 8888887 8


Q ss_pred             cCCcccCCCCcEEecc
Q 007616          235 GKLTSLRTLAKFVVGK  250 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~  250 (596)
                      +.+++|++|++.++..
T Consensus       102 ~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TTCTTCSEEECCSSCB
T ss_pred             ccccCCCEEEeCCCCc
Confidence            8999999998876654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.92  E-value=1.1e-11  Score=112.96  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=63.8

Q ss_pred             CcEEeecCC--CccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcE
Q 007616          169 LRYLDFSHT--AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKF  246 (596)
Q Consensus       169 L~~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~  246 (596)
                      |+...+.++  .++.+|..++.+++|++|++++| .+..+| .++++++|++|++++|. +..+|..+..+++|++|++.
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence            444444443  45556668999999999999999 788888 89999999999999998 88898877778889988887


Q ss_pred             Eecc
Q 007616          247 VVGK  250 (596)
Q Consensus       247 ~~~~  250 (596)
                      ++..
T Consensus       102 ~N~l  105 (198)
T 1ds9_A          102 YNQI  105 (198)
T ss_dssp             EEEC
T ss_pred             CCcC
Confidence            7654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.91  E-value=1.3e-09  Score=127.80  Aligned_cols=90  Identities=19%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             hhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccceecC
Q 007616           16 KGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSKI   95 (596)
Q Consensus        16 ~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~~~   95 (596)
                      +.+..++++||+.|++++|.||+|||+||+++.|+++.++++|.++            ++.++.++++|+++||++....
T Consensus       362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~  429 (1249)
T 3sfz_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRN  429 (1249)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEES
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecC
Confidence            5799999999999999999999999999999999999999999654            3678899999999999997652


Q ss_pred             -CCCeEEEcchHHHHHHHhhccc
Q 007616           96 -DASRFLMHDLIHDLACWASGEI  117 (596)
Q Consensus        96 -~~~~~~mhd~i~~l~~~~~~~~  117 (596)
                       ...+|+|||++|++++..+.++
T Consensus       430 ~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          430 GKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SSSEEEECCHHHHHHHHHHTGGG
T ss_pred             CCceEEEecHHHHHHHHhhhhHH
Confidence             2235999999999999886654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.87  E-value=2.5e-09  Score=94.47  Aligned_cols=89  Identities=21%  Similarity=0.240  Sum_probs=76.7

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  ++|++|++++|.|+.+ |..++.+++|++|++++| .+..+|.. ++++++|++|++++|. +..+|.+ +
T Consensus        23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~   98 (170)
T 3g39_A           23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAF   98 (170)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHHh
Confidence            5776663  7899999999999988 567899999999999999 78888776 5899999999999998 8888876 8


Q ss_pred             cCCcccCCCCcEEecc
Q 007616          235 GKLTSLRTLAKFVVGK  250 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~  250 (596)
                      ..+++|++|++.++..
T Consensus        99 ~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTCTTCCEEECCSSCB
T ss_pred             cCCCCCCEEEeCCCCC
Confidence            8999999998876654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.85  E-value=5.2e-09  Score=93.17  Aligned_cols=103  Identities=23%  Similarity=0.342  Sum_probs=63.3

Q ss_pred             CceeEEEEecccccccccccccccCc-ccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-cc
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELP-NDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-IG  211 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i~  211 (596)
                      ..++.+.+..+.+.         .+| ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|.. ++
T Consensus        28 ~~l~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~   97 (177)
T 2o6r_A           28 SSATRLELESNKLQ---------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFD   97 (177)
T ss_dssp             TTCSEEECCSSCCC---------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CCCcEEEeCCCccc---------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhh
Confidence            45555555554433         233 3356677777777777777766543 466777777777777 55555544 56


Q ss_pred             CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEe
Q 007616          212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVV  248 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~  248 (596)
                      .+++|++|++++|. ++.+|.. +..+++|++|++.++
T Consensus        98 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           98 KLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence            67777777777776 5666655 455666776665444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=8.4e-10  Score=109.12  Aligned_cols=81  Identities=11%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             ccCCCcEEeecCCCcc-cccccccc-CCcCcEEEcccccccc--------------------ccCCc-ccC--------C
Q 007616          165 ELKHLRYLDFSHTAIE-VLSESVST-LYNLQTLILEYCYRLK--------------------KLFPD-IGN--------L  213 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~-~lp~~i~~-l~~L~~L~L~~~~~~~--------------------~lp~~-i~~--------L  213 (596)
                      .+.+++.|.++++--. .+ ..+.. +++|++|||++| .+.                    .+|+. +.+        +
T Consensus        23 ~~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           23 EANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred             hhCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence            4678899999875211 22 22333 889999999999 555                    33432 556        8


Q ss_pred             CccceeecCCCCcccccccc-ccCCcccCCCCcEEec
Q 007616          214 VNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVVG  249 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~~  249 (596)
                      ++|+.|++.+ . ++.++.+ +..+++|+++++..+.
T Consensus       101 ~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~  135 (329)
T 3sb4_A          101 QTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT  135 (329)
T ss_dssp             TTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS
T ss_pred             CCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC
Confidence            8899999988 4 7777766 7888888888765443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.83  E-value=1.6e-08  Score=89.98  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCC
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLA  244 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~  244 (596)
                      .+.++++++.++.+|..+.  ++|++|++++| .+..+|.. ++.+++|++|++++|. +..+|.. ++.+++|++|+
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~   82 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY   82 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEE
Confidence            3455666666666654332  46666666666 44444433 4566666666666665 4554443 34444444444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.71  E-value=1.8e-08  Score=89.16  Aligned_cols=94  Identities=18%  Similarity=0.161  Sum_probs=77.1

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-c
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-I  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i  210 (596)
                      ++..++.|.+..+.+.+        ..|..|+.+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|.. +
T Consensus        31 ~~~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~  101 (174)
T 2r9u_A           31 IPTDKQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAF  101 (174)
T ss_dssp             CCTTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             cCCCCcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHh
Confidence            34667778777776654        3367789999999999999999999875 589999999999999 78888876 8


Q ss_pred             cCCCccceeecCCCCccccccccccC
Q 007616          211 GNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      +.+++|++|++++|. +...|..+..
T Consensus       102 ~~l~~L~~L~L~~N~-~~c~~~~~~~  126 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNP-WDCECRDIMY  126 (174)
T ss_dssp             TTCTTCSEEECCSSC-BCTTBGGGHH
T ss_pred             ccccCCCEEEeCCCC-cccccccHHH
Confidence            999999999999998 6665554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=2.2e-08  Score=99.78  Aligned_cols=93  Identities=19%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             cccCcccccccCCCcEEeecC-CCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSH-TAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPL  232 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~  232 (596)
                      +..+|. +..+++|++|+|++ |.++.+| ..|+.+++|++|+|++| .+..+|+ .+++|++|++|+|++|. +..+|.
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc-cceeCH
Confidence            337898 99999999999996 9999887 57899999999999999 6776665 58999999999999999 889988


Q ss_pred             cccCCcccCCCCcEEeccC
Q 007616          233 RIGKLTSLRTLAKFVVGKG  251 (596)
Q Consensus       233 ~l~~l~~L~~L~~~~~~~~  251 (596)
                      ++.....|+.|++.++...
T Consensus        98 ~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TTTCSCCCCEEECCSSCCC
T ss_pred             HHcccCCceEEEeeCCCcc
Confidence            7554444888887666543

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.59  E-value=4.6e-08  Score=104.97  Aligned_cols=87  Identities=21%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             hhhHHHHHHhhhhhhhhHHHHHHhHhccCCCCcccCHHhHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhCCccceec
Q 007616           15 FKGFRGALGVSYYCLLSYVKRCFAYCSFLPKGYRFDERQIVLLWMAEGLLQHETYGKQMEEFGRKSFQGLHSRSFFQQSK   94 (596)
Q Consensus        15 ~~~i~~~L~lSY~~L~~~lk~cfl~~a~fpe~~~i~~~~Li~~wi~~g~~~~~~~~~~~~~~~~~~~~~L~~~~Ll~~~~   94 (596)
                      ...+..+++.||+.||++.|.||+++|+||+|+.|+.+.++..|.++            .+.+..++++|++++|++...
T Consensus       361 ~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~  428 (591)
T 1z6t_A          361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDR  428 (591)
T ss_dssp             CHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEE
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEec
Confidence            35799999999999999999999999999999999999999999653            245788999999999998654


Q ss_pred             C-CCCeEEEcchHHHHHHHh
Q 007616           95 I-DASRFLMHDLIHDLACWA  113 (596)
Q Consensus        95 ~-~~~~~~mhd~i~~l~~~~  113 (596)
                      . ....++|||++|+++...
T Consensus       429 ~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          429 NGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             ETTEEEEECCHHHHHHHHHH
T ss_pred             CCCccEEEEcHHHHHHHHhh
Confidence            2 234799999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.57  E-value=1.5e-07  Score=82.94  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=72.6

Q ss_pred             cCCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccc-cccCCcCcEEEccccccccccCCc-c
Q 007616          133 FSRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSES-VSTLYNLQTLILEYCYRLKKLFPD-I  210 (596)
Q Consensus       133 ~~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~-i  210 (596)
                      ++..++.+.+..+.+..        ..|..|..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +
T Consensus        28 ~~~~l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~   98 (170)
T 3g39_A           28 IPTTTQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAF   98 (170)
T ss_dssp             CCTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred             CCCCCcEEEcCCCcCCc--------cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHh
Confidence            34667777777766554        2367789999999999999999998865 589999999999999 78888765 8


Q ss_pred             cCCCccceeecCCCCccccc
Q 007616          211 GNLVNLRHLKDSHSNLLEEM  230 (596)
Q Consensus       211 ~~L~~L~~L~l~~~~~l~~l  230 (596)
                      +++++|++|++++|. +.-.
T Consensus        99 ~~l~~L~~L~L~~N~-~~c~  117 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP-WDCA  117 (170)
T ss_dssp             TTCTTCCEEECCSSC-BCTT
T ss_pred             cCCCCCCEEEeCCCC-CCCC
Confidence            999999999999998 4433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.37  E-value=2.9e-05  Score=78.35  Aligned_cols=192  Identities=13%  Similarity=0.144  Sum_probs=108.8

Q ss_pred             ccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccccccccccCCccc
Q 007616          163 IAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSL  240 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L  240 (596)
                      |.+. +|+.+.+..+ ++.++. .|.+ .+|+.+.+..  .+..++ ..+.++.+|+.+++.+|. +..+|.+.....+|
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L  205 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGI  205 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCC
T ss_pred             cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeeccc
Confidence            4443 6888888765 666653 4555 3688888876  455555 347788888888888877 77887774445666


Q ss_pred             CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616          241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK  320 (596)
Q Consensus       241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  320 (596)
                      +.+.+.       ..+..++                        ...+.++++|+.+.+..+-  ..-....+.. .+|+
T Consensus       206 ~~l~lp-------~~l~~I~------------------------~~aF~~~~~L~~l~l~~~l--~~I~~~aF~~-~~L~  251 (401)
T 4fdw_A          206 EEVLLP-------VTLKEIG------------------------SQAFLKTSQLKTIEIPENV--STIGQEAFRE-SGIT  251 (401)
T ss_dssp             SEEECC-------TTCCEEC------------------------TTTTTTCTTCCCEECCTTC--CEECTTTTTT-CCCS
T ss_pred             CEEEeC-------Cchheeh------------------------hhHhhCCCCCCEEecCCCc--cCcccccccc-CCcc
Confidence            666431       0011110                        0125566666666664321  1111112222 5677


Q ss_pred             EEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCC----CCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCC
Q 007616          321 ELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQC----TTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPF  394 (596)
Q Consensus       321 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~  394 (596)
                      .+.+.+ ....++.... ..+++|+.+.+.++...    ..++  .+.++++|+.+.+.+  .++.++...+.+     +
T Consensus       252 ~i~lp~-~i~~I~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~-----c  322 (401)
T 4fdw_A          252 TVKLPN-GVTNIASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGG-----N  322 (401)
T ss_dssp             EEEEET-TCCEECTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTT-----C
T ss_pred             EEEeCC-CccEEChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcC-----C
Confidence            777743 3333433222 16778888888765532    1233  466677777777763  366665443322     5


Q ss_pred             CCcceeecc
Q 007616          395 PSLETLCFE  403 (596)
Q Consensus       395 ~~L~~L~l~  403 (596)
                      ++|+.+.|.
T Consensus       323 ~~L~~l~lp  331 (401)
T 4fdw_A          323 RKVTQLTIP  331 (401)
T ss_dssp             CSCCEEEEC
T ss_pred             CCccEEEEC
Confidence            666666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.18  E-value=3.9e-06  Score=83.33  Aligned_cols=74  Identities=24%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             cEEeecCC-CccccccccccCCcCcEEEccc-cccccccC-CcccCCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616          170 RYLDFSHT-AIEVLSESVSTLYNLQTLILEY-CYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  245 (596)
Q Consensus       170 ~~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~  245 (596)
                      ..++++++ .++.+|. ++.+.+|++|+|++ | .+..+| ..+++|++|++|+|++|. +..+|+. +++|++|++|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence            34688888 8999999 99999999999996 7 788777 459999999999999998 7776654 677777777765


Q ss_pred             E
Q 007616          246 F  246 (596)
Q Consensus       246 ~  246 (596)
                      .
T Consensus        88 ~   88 (347)
T 2ifg_A           88 S   88 (347)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.15  E-value=8.7e-05  Score=74.90  Aligned_cols=36  Identities=22%  Similarity=0.220  Sum_probs=27.8

Q ss_pred             CCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEec
Q 007616          530 FVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYL  567 (596)
Q Consensus       530 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~  567 (596)
                      .+.++++|+.+.+..  +++.++...+  +++|+.+++..
T Consensus       338 aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          338 SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred             hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence            577888999998875  3788877655  67899988863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.15  E-value=3.4e-05  Score=77.84  Aligned_cols=192  Identities=14%  Similarity=0.140  Sum_probs=124.5

Q ss_pred             ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCccc
Q 007616          163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSL  240 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L  240 (596)
                      |.. .+|+.+.+.. .++.++ ..|.+|.+|+.+++..+ .+..+|...-...+|+.+.+..+  +..++.. +..+++|
T Consensus       154 F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L  228 (401)
T 4fdw_A          154 FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQL  228 (401)
T ss_dssp             TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTC
T ss_pred             cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCC
Confidence            444 3699999986 677665 57889999999999988 78888877555789999999854  6777765 7788888


Q ss_pred             CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCcc
Q 007616          241 RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLK  320 (596)
Q Consensus       241 ~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  320 (596)
                      +.+.+..       .+..++.                        ..+.+ .+|+.+.+...  ...-....+..+++|+
T Consensus       229 ~~l~l~~-------~l~~I~~------------------------~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~L~  274 (401)
T 4fdw_A          229 KTIEIPE-------NVSTIGQ------------------------EAFRE-SGITTVKLPNG--VTNIASRAFYYCPELA  274 (401)
T ss_dssp             CCEECCT-------TCCEECT------------------------TTTTT-CCCSEEEEETT--CCEECTTTTTTCTTCC
T ss_pred             CEEecCC-------CccCccc------------------------ccccc-CCccEEEeCCC--ccEEChhHhhCCCCCC
Confidence            8886421       1111100                        01222 34555555221  1111223455678888


Q ss_pred             EEEEeccCCC-----CCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCC
Q 007616          321 ELKVRGYGGT-----KFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP  393 (596)
Q Consensus       321 ~L~l~~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~  393 (596)
                      .+.+.++...     .++.... ..+++|+.+.+.+.  ++.++  .+.++++|+.+.+..  .++.++...+.+     
T Consensus       275 ~l~l~~~~~~~~~~~~I~~~aF-~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~-----  344 (401)
T 4fdw_A          275 EVTTYGSTFNDDPEAMIHPYCL-EGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNN-----  344 (401)
T ss_dssp             EEEEESSCCCCCTTCEECTTTT-TTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSS-----
T ss_pred             EEEeCCccccCCcccEECHHHh-hCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCC-----
Confidence            8888776543     2333322 26789999998842  55555  577889999999965  366776543332     


Q ss_pred             CCCcceeeccc
Q 007616          394 FPSLETLCFED  404 (596)
Q Consensus       394 ~~~L~~L~l~~  404 (596)
                      + +|+.+.+.+
T Consensus       345 ~-~L~~l~l~~  354 (401)
T 4fdw_A          345 T-GIKEVKVEG  354 (401)
T ss_dssp             S-CCCEEEECC
T ss_pred             C-CCCEEEEcC
Confidence            5 777777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.98  E-value=3.9e-06  Score=83.19  Aligned_cols=168  Identities=16%  Similarity=0.122  Sum_probs=93.9

Q ss_pred             cCcccccccCCCcEEeecCCCcc----------ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE----------VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLL  227 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~----------~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l  227 (596)
                      .+..++.++++|+.|.+.+....          .++..+..+++|+.|++++|..+ .+|. +. +++|++|++..|...
T Consensus       130 ~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~  206 (362)
T 2ra8_A          130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP  206 (362)
T ss_dssp             HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC
T ss_pred             HHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC
Confidence            34556778899999999765321          34555678899999999988333 4554 43 889999999887722


Q ss_pred             ccccccc--cCCcccCCCCcEEec--cCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccC
Q 007616          228 EEMPLRI--GKLTSLRTLAKFVVG--KGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGN  303 (596)
Q Consensus       228 ~~lp~~l--~~l~~L~~L~~~~~~--~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  303 (596)
                      ......+  .++++|++|+++...  ......+..+..+  +                     ....+++|+.|.+..+.
T Consensus       207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l---------------------~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--F---------------------SKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--S---------------------CTTTCTTCCEEEEESCT
T ss_pred             hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH--H---------------------hcCCCCCcCEEeCCCCC
Confidence            2222223  368888888764321  1111112221110  0                     01235566666665544


Q ss_pred             Ccchh--hhhccCCCCCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCC
Q 007616          304 KIQTC--VFEMLKPHYGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCN  353 (596)
Q Consensus       304 ~~~~~--~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~  353 (596)
                      .....  .......+++|+.|+++.|....     ++..+.  .+++|+.|++++|.
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~--~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD--KIKHLKFINMKYNY  318 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH--HHTTCSEEECCSBB
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc--cCCcceEEECCCCc
Confidence            32111  11111235677777776665432     121111  45678888887775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.98  E-value=3.1e-07  Score=91.84  Aligned_cols=158  Identities=16%  Similarity=0.105  Sum_probs=83.5

Q ss_pred             cCCCcEEeecCCCcccc-----ccccc-cCCcCcEEEccccccccc--cCCcccCCCccceeecCCCCcccccc-ccc--
Q 007616          166 LKHLRYLDFSHTAIEVL-----SESVS-TLYNLQTLILEYCYRLKK--LFPDIGNLVNLRHLKDSHSNLLEEMP-LRI--  234 (596)
Q Consensus       166 l~~L~~L~L~~~~i~~l-----p~~i~-~l~~L~~L~L~~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~l--  234 (596)
                      +++|+.|++++|.++..     ...+. ...+|++|+|++| .+..  +..-...+++|++|++++|. ++... ..+  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence            45677788887777632     22222 2257888888877 3432  11112345677788888776 43321 111  


Q ss_pred             ---cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---h
Q 007616          235 ---GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---C  308 (596)
Q Consensus       235 ---~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~  308 (596)
                         ...++|++|++.++....                          .....+...+..+++|+.|++++|.....   .
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~--------------------------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTA--------------------------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHH--------------------------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HHHhcCCccceeeCCCCCCCh--------------------------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence               234455655543322100                          00112223345566677777777653221   1


Q ss_pred             hhhccCCCCCccEEEEeccCCCCC-----CCCCCCCCCCCccEEEEecCC
Q 007616          309 VFEMLKPHYGLKELKVRGYGGTKF-----PAWLGQSSFENLVVLRFKNCN  353 (596)
Q Consensus       309 ~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~  353 (596)
                      ....+...++|+.|++++|.++..     ...+.  ..++|++|++++|.
T Consensus       203 L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--EHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--HCSSCCEEECTTSS
T ss_pred             HHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--hCCCCCEEeccCCC
Confidence            234455566788888887765421     11111  34678888888886

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.83  E-value=6.5e-07  Score=89.49  Aligned_cols=136  Identities=17%  Similarity=0.192  Sum_probs=83.6

Q ss_pred             CCCcEEeecCCCccc--cccccccCCcCcEEEccccccccccC-Ccc-----cCCCccceeecCCCCcccc-----cccc
Q 007616          167 KHLRYLDFSHTAIEV--LSESVSTLYNLQTLILEYCYRLKKLF-PDI-----GNLVNLRHLKDSHSNLLEE-----MPLR  233 (596)
Q Consensus       167 ~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~~~~lp-~~i-----~~L~~L~~L~l~~~~~l~~-----lp~~  233 (596)
                      ++|++|+|++|.++.  +......+++|++|+|++| .++... ..+     ....+|++|++++|. ++.     ++..
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~  178 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG  178 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence            689999999998873  2333345778999999998 554321 112     246789999999998 544     4445


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcch---hhh
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQT---CVF  310 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~  310 (596)
                      +..+++|++|++.++...      ..                    ....+...+...++|+.|++++|.....   ...
T Consensus       179 L~~~~~L~~L~Ls~N~l~------~~--------------------g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLG------DE--------------------GLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             HHTCSSCCEEECTTSSCH------HH--------------------HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             HhcCCCcCEEeCCCCCCC------cH--------------------HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            567778888876433221      10                    0112233455566777777777654322   122


Q ss_pred             hccCCCCCccEEEEeccCCC
Q 007616          311 EMLKPHYGLKELKVRGYGGT  330 (596)
Q Consensus       311 ~~l~~~~~L~~L~l~~~~~~  330 (596)
                      ..+...++|+.|++++|.++
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHhCCCCCEEeccCCCCC
Confidence            33445577888888877643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.82  E-value=0.00096  Score=67.15  Aligned_cols=55  Identities=7%  Similarity=0.102  Sum_probs=26.5

Q ss_pred             ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCC
Q 007616          185 SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  243 (596)
Q Consensus       185 ~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L  243 (596)
                      .|.++.+|+.+.+..+  ++.+++ .+.++.+|+.+++..+  ++.++.. +..+.+|+.+
T Consensus        66 AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i  122 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSI  122 (394)
T ss_dssp             TTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCC
T ss_pred             HhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhh
Confidence            3455555555555432  444432 2555566666655433  3344433 4445555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.79  E-value=1.3e-05  Score=75.17  Aligned_cols=80  Identities=20%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             cccCCCcEEeecCCCccccc---cccccCCcCcEEEccccccccccCCcccCCC--ccceeecCCCCccccccc------
Q 007616          164 AELKHLRYLDFSHTAIEVLS---ESVSTLYNLQTLILEYCYRLKKLFPDIGNLV--NLRHLKDSHSNLLEEMPL------  232 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~------  232 (596)
                      ..+++|+.|+|++|.|+.++   ..++.+++|++|+|++| .+..+ ..+..+.  +|++|++++|.....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            46789999999999888654   56678999999999998 66665 3355555  899999999985444552      


Q ss_pred             -cccCCcccCCCCc
Q 007616          233 -RIGKLTSLRTLAK  245 (596)
Q Consensus       233 -~l~~l~~L~~L~~  245 (596)
                       .+..+++|+.|+.
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             2567788888764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.72  E-value=1e-05  Score=70.23  Aligned_cols=91  Identities=11%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             cCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEcccccccccc-CCcccCC----CccceeecCCCCcccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKL-FPDIGNL----VNLRHLKDSHSNLLEEMP  231 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L----~~L~~L~l~~~~~l~~lp  231 (596)
                      .+|.....-.+|+.||+++|.|+.. -..+..+++|++|+|++|..+++- -..+..+    ++|++|++++|..+++-.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4565443345799999999998732 345788999999999999666531 1224443    479999999997666521


Q ss_pred             -ccccCCcccCCCCcEEe
Q 007616          232 -LRIGKLTSLRTLAKFVV  248 (596)
Q Consensus       232 -~~l~~l~~L~~L~~~~~  248 (596)
                       ..+.++++|++|++.++
T Consensus       132 l~~L~~~~~L~~L~L~~c  149 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDL  149 (176)
T ss_dssp             HHHGGGCTTCCEEEEESC
T ss_pred             HHHHhcCCCCCEEECCCC
Confidence             12455666666655433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=1.1e-05  Score=70.09  Aligned_cols=86  Identities=16%  Similarity=0.154  Sum_probs=50.9

Q ss_pred             ceeEEEEecccccccccccccccCcccccccCCCcEEeecCC-Cccc-cccccccC----CcCcEEEcccccccccc-CC
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHT-AIEV-LSESVSTL----YNLQTLILEYCYRLKKL-FP  208 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~-lp~~i~~l----~~L~~L~L~~~~~~~~l-p~  208 (596)
                      .+.++.+....+..    .+    -..+..+++|+.|+|++| .|+. --..++.+    ++|++|++++|..+++- -.
T Consensus        62 ~L~~LDLs~~~Itd----~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSCIMS----IG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCCCCG----GG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCCccH----HH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            45666666554322    11    122456778888888887 4662 12334443    46888888888655431 12


Q ss_pred             cccCCCccceeecCCCCcccc
Q 007616          209 DIGNLVNLRHLKDSHSNLLEE  229 (596)
Q Consensus       209 ~i~~L~~L~~L~l~~~~~l~~  229 (596)
                      .+.++++|++|++++|..++.
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCC
T ss_pred             HHhcCCCCCEEECCCCCCCCc
Confidence            356778888888888875554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.34  E-value=3.1e-05  Score=68.91  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=61.0

Q ss_pred             cccccccCCCcEEeecCC-Ccc-----ccccccccCCcCcEEEccccccccc-----cCCcccCCCccceeecCCCCccc
Q 007616          160 PNDIAELKHLRYLDFSHT-AIE-----VLSESVSTLYNLQTLILEYCYRLKK-----LFPDIGNLVNLRHLKDSHSNLLE  228 (596)
Q Consensus       160 p~~~~~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~  228 (596)
                      ...+...+.|++|+|++| .+.     .+...+...++|++|+|++| .++.     +...+...++|++|++++|. ++
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-IS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence            344567889999999999 886     34566777889999999999 4432     33445566889999999998 55


Q ss_pred             c-----ccccccCCcccCCCCc
Q 007616          229 E-----MPLRIGKLTSLRTLAK  245 (596)
Q Consensus       229 ~-----lp~~l~~l~~L~~L~~  245 (596)
                      .     +...+...++|++|++
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEEC
T ss_pred             HHHHHHHHHHHHhCCCceEEEe
Confidence            4     4455666667777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.16  E-value=0.0001  Score=72.98  Aligned_cols=141  Identities=16%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CcccccccCCCcEEeecCCCccccccccccCCcCcEEEcccccccc-ccCCccc--CCCccceeecCCCCc-------cc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK-KLFPDIG--NLVNLRHLKDSHSNL-------LE  228 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~i~--~L~~L~~L~l~~~~~-------l~  228 (596)
                      ++..+..+++|+.|+++++.-..++. + .+++|++|++..| .+. .....+.  .+++|++|+|+.+..       +.
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            55556788999999999884234554 4 3899999999988 332 2112233  789999999864221       11


Q ss_pred             cccccc--cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcc
Q 007616          229 EMPLRI--GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQ  306 (596)
Q Consensus       229 ~lp~~l--~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  306 (596)
                      .+...+  ..+++|++|++.++...                          . ...........+++|+.|+++.+....
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~--------------------------~-~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQ--------------------------N-VVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTH--------------------------H-HHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCc--------------------------h-HHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            111111  12445555544322110                          0 000111112356788888887665322


Q ss_pred             h---hhhhccCCCCCccEEEEeccCC
Q 007616          307 T---CVFEMLKPHYGLKELKVRGYGG  329 (596)
Q Consensus       307 ~---~~~~~l~~~~~L~~L~l~~~~~  329 (596)
                      .   .....+..+++|+.|++++|.+
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHHHHHhhcccCCcceEEECCCCcC
Confidence            2   1233334567888888887753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.11  E-value=5.7e-05  Score=67.16  Aligned_cols=109  Identities=14%  Similarity=0.108  Sum_probs=74.9

Q ss_pred             CceeEEEEecc-cccccccccccccCcccccccCCCcEEeecCCCccc-----cccccccCCcCcEEEccccccccc---
Q 007616          135 RNLRHLSYLTS-RFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEV-----LSESVSTLYNLQTLILEYCYRLKK---  205 (596)
Q Consensus       135 ~~~~~l~~~~~-~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~---  205 (596)
                      ..++.+.+..+ .+..    .+...+...+...++|++|+|++|.|..     +...+...++|++|+|++| .++.   
T Consensus        36 ~~L~~L~L~~n~~i~~----~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~  110 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGI  110 (185)
T ss_dssp             TTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHH
T ss_pred             CCCCEEEecCCCCCCH----HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHH
Confidence            34666666554 3321    1111345566778899999999999873     4556777789999999999 5543   


Q ss_pred             --cCCcccCCCccceeec--CCCCcccc-----ccccccCCcccCCCCcEEec
Q 007616          206 --LFPDIGNLVNLRHLKD--SHSNLLEE-----MPLRIGKLTSLRTLAKFVVG  249 (596)
Q Consensus       206 --lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~l~~l~~L~~L~~~~~~  249 (596)
                        +...+...++|++|++  ++|. ++.     +...+...++|++|++.++.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence              4566778889999999  7787 544     33445556778888764443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.09  E-value=0.034  Score=55.69  Aligned_cols=37  Identities=19%  Similarity=0.300  Sum_probs=23.8

Q ss_pred             CCCCCCCCCeeecCCCCCCccCCCCCC--CCCccEEEEecC
Q 007616          530 FVGNLTSLERLELPRCPVLRSFPENVL--PPSLVYLSIYLC  568 (596)
Q Consensus       530 ~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~C  568 (596)
                      .+.++++|+.+.+..  +++.+....+  +++|+.+++.+.
T Consensus       329 aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          329 AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            466677777777753  3666665444  567777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.06  E-value=0.0048  Score=61.99  Aligned_cols=102  Identities=15%  Similarity=0.246  Sum_probs=60.9

Q ss_pred             CCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEe
Q 007616          340 SFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIV  417 (596)
Q Consensus       340 ~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~  417 (596)
                      .+.+|+.+.+....  ..+.  .+.++++|+.+.+..  .++.++...+.+     +.+|+.+.|.+  +++.+.     
T Consensus       263 ~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~-----c~~L~~i~lp~--~v~~I~-----  326 (394)
T 4gt6_A          263 SCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPESVFAG-----CISLKSIDIPE--GITQIL-----  326 (394)
T ss_dssp             TCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-----CTTCCEEECCT--TCCEEC-----
T ss_pred             ecccccEEeccccc--ceecCcccccccccccccCCC--cccccCceeecC-----CCCcCEEEeCC--cccEeh-----
Confidence            46677877775432  2222  456678888888753  466666543332     67788877753  122221     


Q ss_pred             cCCCCCCCCCCCCCCCCEEEEeec-cCh-hccCCCCCCcceEEecCCc
Q 007616          418 RCPKLKGRLPQRFSSLERIVITSC-EQL-LVSYTALPPLCELEIDGFS  463 (596)
Q Consensus       418 ~c~~L~~~~p~~l~~L~~L~l~~c-~~l-~~~~~~l~~L~~L~l~~c~  463 (596)
                            ...-..+.+|+.+.+... ..+ ...|.++++|+.+++.++.
T Consensus       327 ------~~aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          327 ------DDAFAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             ------TTTTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             ------HhHhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce
Confidence                  011235677888887432 223 4567788888888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.79  E-value=0.00084  Score=62.87  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=58.3

Q ss_pred             ceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCC--cCcEEEccccccccccCC-----
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLY--NLQTLILEYCYRLKKLFP-----  208 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~~~~lp~-----  208 (596)
                      .++.|.+..+.+.++.      .+|..+..+++|++|+|++|.|+.+ ..+..+.  +|++|+|++|.....+|.     
T Consensus       171 ~L~~L~Ls~N~l~~l~------~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          171 ELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             TCCEEECTTSCCCCCG------GGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             CCCEEECCCCCCCCCc------cchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            5666666666555433      5667778999999999999999977 3355555  999999999944444542     


Q ss_pred             --cccCCCccceeec
Q 007616          209 --DIGNLVNLRHLKD  221 (596)
Q Consensus       209 --~i~~L~~L~~L~l  221 (596)
                        .+..+++|+.||-
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence              2678899998864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.22  E-value=0.2  Score=49.62  Aligned_cols=33  Identities=15%  Similarity=0.243  Sum_probs=19.7

Q ss_pred             CCCCCCEEEEeecc--Ch-hccCCCCCCcceEEecC
Q 007616          429 RFSSLERIVITSCE--QL-LVSYTALPPLCELEIDG  461 (596)
Q Consensus       429 ~l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L~l~~  461 (596)
                      .+++|+.+.+.++.  .+ ...|.++.+|+.+.+..
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             cccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            45667777765432  22 34566677777777643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.23  E-value=0.023  Score=46.62  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             EEeecCCCcc--ccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCC
Q 007616          171 YLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSN  225 (596)
Q Consensus       171 ~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~  225 (596)
                      +++.+++.++  .+|..+.  .+|++|+|++| .+..+|.. +..+++|+.|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence            5566666665  6664432  35666666666 56666544 4566667777776665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.01  E-value=0.09  Score=43.04  Aligned_cols=41  Identities=20%  Similarity=0.190  Sum_probs=33.7

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccc
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYC  200 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~  200 (596)
                      .+|..+.  .+|++|+|++|.|+.+|. .|..+++|++|+|++|
T Consensus        24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            4555432  369999999999999975 5688999999999998

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=87.25  E-value=1.1  Score=44.06  Aligned_cols=79  Identities=15%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             ccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcc
Q 007616          163 IAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTS  239 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~  239 (596)
                      +..+..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+  +..++. .+.++.+|+.+.+.++. ++.++.. +.++.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~  311 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVK  311 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccc-cceehhhhhcCCCC
Confidence            455667777777654 44443 34566777777777543  444443 35667777777776665 5666554 666677


Q ss_pred             cCCCCc
Q 007616          240 LRTLAK  245 (596)
Q Consensus       240 L~~L~~  245 (596)
                      |+.+.+
T Consensus       312 L~~i~l  317 (379)
T 4h09_A          312 LSSVTL  317 (379)
T ss_dssp             CCEEEC
T ss_pred             CCEEEc
Confidence            776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.23  E-value=0.27  Score=43.30  Aligned_cols=60  Identities=15%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             ccCCCcEEeecCC-Ccc-----ccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCC
Q 007616          165 ELKHLRYLDFSHT-AIE-----VLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSN  225 (596)
Q Consensus       165 ~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~  225 (596)
                      .-+.|+.|+|+++ .|.     .+-..+..-..|+.|+|++| .++     .+-+.+..-+.|++|+|++|.
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3456777777764 554     23445555667777777777 333     222223345677777777776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	596
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 33/150 (22%), Positives = 51/150 (34%), Gaps = 17/150 (11%)

Query: 106 IHDLACWASGEICWCMESTWDGNNERRFSRNLRHLSYLTSRFDGIKRFEGL--------- 156
           I  LA   +        +             L  L    ++   I    GL         
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 157 ---HELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNL 213
               E  + I+ LK+L YL      I  +S  VS+L  LQ L      ++  +   + NL
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANN-KVSDV-SSLANL 350

Query: 214 VNLRHLKDSHSNLLEEMPLRIGKLTSLRTL 243
            N+  L   H+ + +  PL    LT +  L
Sbjct: 351 TNINWLSAGHNQISDLTPL--ANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 58/375 (15%), Positives = 103/375 (27%), Gaps = 50/375 (13%)

Query: 185 SVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA 244
           S + L  + TL  +    +K +   +  L NL  +  S++ L +  PL    LT L  + 
Sbjct: 39  SQTDLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDIL 94

Query: 245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK 304
                  + + L  L +L  L          +                 +  +S   G  
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 305 I--QTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNC--NQCTTLPS 360
              Q      +     L  L                S    L  L       NQ + +  
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 361 VGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEP--FPSLETLCFEDMQEWEERIGLSIVR 418
           +G L +L               L   GN   +     SL  L   D+   +      +  
Sbjct: 215 LGILTNLDE-------------LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 261

Query: 419 CPKLKGRLPQRFSSLERIVITSCEQLLVSYTALPPLCELEIDGFSELFLILQIQGWRSRA 478
             KL              +     Q+    + + PL  L      EL             
Sbjct: 262 LTKL------------TELKLGANQI----SNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 479 EILPQEIRIP-NQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSF------- 530
                 + +  N  S +  +  L+ + R+    + +  ++       +  LS        
Sbjct: 306 LKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD 365

Query: 531 ---VGNLTSLERLEL 542
              + NLT + +L L
Sbjct: 366 LTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 40/324 (12%), Positives = 88/324 (27%), Gaps = 17/324 (5%)

Query: 136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTL 195
           +L  ++ L +   GIK  +G+  L N       L  ++FS+  +  ++  +  L  L  +
Sbjct: 42  DLDQVTTLQADRLGIKSIDGVEYLNN-------LTQINFSNNQLTDIT-PLKNLTKLVDI 93

Query: 196 ILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSG 255
           ++                +    L ++    ++ +           +             
Sbjct: 94  LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 153

Query: 256 LKELRSLMHLQEKLTIS-GLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK 314
               +     Q             +  D    +++    L  L+              + 
Sbjct: 154 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT 213

Query: 315 PHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG 374
           P   L  L      G +       +S  NL  L   N NQ + L  +  L  L  L +  
Sbjct: 214 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN-NQISNLAPLSGLTKLTELKLGA 272

Query: 375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSL 433
                   L       +      +      +   +    L++     +    P    + L
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL-YFNNISDISPVSSLTKL 331

Query: 434 ERIVITSCEQLLVSYTALPPLCEL 457
           +R+   +        + +  L  L
Sbjct: 332 QRLFFANN-----KVSDVSSLANL 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 9e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSN 225
              L  L+ S+  +  L         L+ LI  +   L ++     NL  L        N
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPELPQNLKQL----HVEYN 334

Query: 226 LLEEMPLRIGKLTSLR 241
            L E P     +  LR
Sbjct: 335 PLREFPDIPESVEDLR 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	596
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.5
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.48
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.43
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.3
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.27
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.21
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.2
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.18
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.15
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.02
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.99
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.81
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.75
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.39
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.02
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.24

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.8e-20  Score=188.57  Aligned_cols=319  Identities=17%  Similarity=0.189  Sum_probs=177.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      ++.+++|++|++++|.|+.+|+ ++++++|++|++++| .+..+++ ++++++|+.|+++++. ...++. ......+..
T Consensus        62 l~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n-~i~~i~~-l~~l~~L~~L~~~~~~-~~~~~~-~~~~~~~~~  136 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNR  136 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSE
T ss_pred             cccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccc-ccccccc-cccccccccccccccc-cccccc-ccccccccc
Confidence            4556666666666666666653 666666666666666 4555543 5666666666666655 444332 222223333


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      +....+..........   ....  ........... .     ..+.............   ...........+++++.+
T Consensus       137 ~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l  202 (384)
T d2omza2         137 LELSSNTISDISALSG---LTSL--QQLSFGNQVTD-L-----KPLANLTTLERLDISS---NKVSDISVLAKLTNLESL  202 (384)
T ss_dssp             EEEEEEEECCCGGGTT---CTTC--SEEEEEESCCC-C-----GGGTTCTTCCEEECCS---SCCCCCGGGGGCTTCSEE
T ss_pred             cccccccccccccccc---cccc--cccccccccch-h-----hhhccccccccccccc---ccccccccccccccccee
Confidence            3222222111000000   0000  00000000000 0     0011111111111111   111222334456788888


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeec
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCF  402 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  402 (596)
                      +++++....++.+.   ..++|+.|++++|. ++.++.++.+++|+.|++.+|. +..++. +      ..+++|+.|++
T Consensus       203 ~l~~n~i~~~~~~~---~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~------~~~~~L~~L~l  270 (384)
T d2omza2         203 IATNNQISDITPLG---ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAP-L------SGLTKLTELKL  270 (384)
T ss_dssp             ECCSSCCCCCGGGG---GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGG-G------TTCTTCSEEEC
T ss_pred             eccCCccCCCCccc---ccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCc-c------cccccCCEeec
Confidence            88888777665432   46788999998886 5566777888899999998875 333321 2      23788888888


Q ss_pred             ccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccCh-hccCCCCCCcceEEecCCcccceeeEeccccccccc
Q 007616          403 EDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQL-LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEI  480 (596)
Q Consensus       403 ~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~  480 (596)
                      ++..               +.+..+ ..++.++.+.+.+|.-- ...+..+++++.|++++|..       .+...+   
T Consensus       271 ~~~~---------------l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l-------~~l~~l---  325 (384)
T d2omza2         271 GANQ---------------ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-------SDISPV---  325 (384)
T ss_dssp             CSSC---------------CCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-------SCCGGG---
T ss_pred             cCcc---------------cCCCCccccccccccccccccccccccccchhcccCeEECCCCCC-------CCCccc---
Confidence            7632               221111 24677788887776521 23466788888999888751       111101   


Q ss_pred             CCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCc
Q 007616          481 LPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSL  560 (596)
Q Consensus       481 ~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L  560 (596)
                                 .-+++|++| ++++|.     ++.+            +.+.++++|++|++++| +++.+++-.-+++|
T Consensus       326 -----------~~l~~L~~L-~L~~n~-----l~~l------------~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L  375 (384)
T d2omza2         326 -----------SSLTKLQRL-FFANNK-----VSDV------------SSLANLTNINWLSAGHN-QISDLTPLANLTRI  375 (384)
T ss_dssp             -----------GGCTTCCEE-ECCSSC-----CCCC------------GGGGGCTTCCEEECCSS-CCCBCGGGTTCTTC
T ss_pred             -----------ccCCCCCEE-ECCCCC-----CCCC------------hhHcCCCCCCEEECCCC-cCCCChhhccCCCC
Confidence                       117889999 999886     4333            24677899999999885 67887764457899


Q ss_pred             cEEEEec
Q 007616          561 VYLSIYL  567 (596)
Q Consensus       561 ~~L~i~~  567 (596)
                      ++|++++
T Consensus       376 ~~L~L~~  382 (384)
T d2omza2         376 TQLGLND  382 (384)
T ss_dssp             SEEECCC
T ss_pred             CEeeCCC
Confidence            9999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=8.9e-18  Score=168.49  Aligned_cols=315  Identities=20%  Similarity=0.248  Sum_probs=191.7

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLV  214 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~  214 (596)
                      .+++.|.+..+.+.         .+|+ ++++++|++|++++|.+..+++ ++.+++|+.|+++++ ....++. .....
T Consensus        66 ~nL~~L~Ls~N~l~---------~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~-~~~~~~~-~~~~~  132 (384)
T d2omza2          66 NNLTQINFSNNQLT---------DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLT  132 (384)
T ss_dssp             TTCCEEECCSSCCC---------CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCT
T ss_pred             CCCCEEeCcCCcCC---------CCcc-ccCCcccccccccccccccccc-ccccccccccccccc-ccccccc-ccccc
Confidence            45555555554433         4553 8899999999999999998865 899999999999998 5655543 44555


Q ss_pred             ccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCcccc
Q 007616          215 NLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKL  294 (596)
Q Consensus       215 ~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L  294 (596)
                      .+..+....+. +..+.... ... .........   .......+....... ........ .     ........++++
T Consensus       133 ~~~~~~~~~~~-l~~~~~~~-~~~-~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~-~-----~~~~~~~~l~~~  199 (384)
T d2omza2         133 NLNRLELSSNT-ISDISALS-GLT-SLQQLSFGN---QVTDLKPLANLTTLE-RLDISSNK-V-----SDISVLAKLTNL  199 (384)
T ss_dssp             TCSEEEEEEEE-ECCCGGGT-TCT-TCSEEEEEE---SCCCCGGGTTCTTCC-EEECCSSC-C-----CCCGGGGGCTTC
T ss_pred             ccccccccccc-cccccccc-ccc-ccccccccc---ccchhhhhccccccc-cccccccc-c-----cccccccccccc
Confidence            66666665554 33322211 000 001111111   111111222111111 11111100 0     011224556677


Q ss_pred             ccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616          295 EALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG  374 (596)
Q Consensus       295 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~  374 (596)
                      +.+.++.+.....   ......++|+.|++++|....++. +.  .+++|+.|++++|. ++.++.++.+++|+.|++++
T Consensus       200 ~~l~l~~n~i~~~---~~~~~~~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~  272 (384)
T d2omza2         200 ESLIATNNQISDI---TPLGILTNLDELSLNGNQLKDIGT-LA--SLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGA  272 (384)
T ss_dssp             SEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCS
T ss_pred             ceeeccCCccCCC---CcccccCCCCEEECCCCCCCCcch-hh--cccccchhccccCc-cCCCCcccccccCCEeeccC
Confidence            7777776543221   223456789999999998877764 33  67899999999987 56677788899999999988


Q ss_pred             ccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC--CCCCCCCEEEEeeccCh-hccCCCC
Q 007616          375 MAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP--QRFSSLERIVITSCEQL-LVSYTAL  451 (596)
Q Consensus       375 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p--~~l~~L~~L~l~~c~~l-~~~~~~l  451 (596)
                      +.. ..++. +      ..++.++.+.+...               .+. .++  ..+++++.|+++++.-- ...+..+
T Consensus       273 ~~l-~~~~~-~------~~~~~l~~l~~~~n---------------~l~-~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l  328 (384)
T d2omza2         273 NQI-SNISP-L------AGLTALTNLELNEN---------------QLE-DISPISNLKNLTYLTLYFNNISDISPVSSL  328 (384)
T ss_dssp             SCC-CCCGG-G------TTCTTCSEEECCSS---------------CCS-CCGGGGGCTTCSEEECCSSCCSCCGGGGGC
T ss_pred             ccc-CCCCc-c------cccccccccccccc---------------ccc-cccccchhcccCeEECCCCCCCCCcccccC
Confidence            653 22221 1      22667777766652               222 121  35788999999887521 1346789


Q ss_pred             CCcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCCCCCCCC
Q 007616          452 PPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQLESLSFV  531 (596)
Q Consensus       452 ~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L~~l~~~  531 (596)
                      ++|++|++++|..       .+.+.+..              +++|+.| ++++|.     ++.++            .+
T Consensus       329 ~~L~~L~L~~n~l-------~~l~~l~~--------------l~~L~~L-~l~~N~-----l~~l~------------~l  369 (384)
T d2omza2         329 TKLQRLFFANNKV-------SDVSSLAN--------------LTNINWL-SAGHNQ-----ISDLT------------PL  369 (384)
T ss_dssp             TTCCEEECCSSCC-------CCCGGGGG--------------CTTCCEE-ECCSSC-----CCBCG------------GG
T ss_pred             CCCCEEECCCCCC-------CCChhHcC--------------CCCCCEE-ECCCCc-----CCCCh------------hh
Confidence            9999999999861       11111111              7889999 998887     44433            36


Q ss_pred             CCCCCCCeeecCCC
Q 007616          532 GNLTSLERLELPRC  545 (596)
Q Consensus       532 ~~l~~L~~L~l~~c  545 (596)
                      .++++|+.|+|+++
T Consensus       370 ~~l~~L~~L~L~~N  383 (384)
T d2omza2         370 ANLTRITQLGLNDQ  383 (384)
T ss_dssp             TTCTTCSEEECCCE
T ss_pred             ccCCCCCEeeCCCC
Confidence            78999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=2.5e-19  Score=174.58  Aligned_cols=273  Identities=15%  Similarity=0.120  Sum_probs=182.7

Q ss_pred             HHHHhhccceEEeccccCCCCcccc--CCceeEEEEecccccccccccccccCcccccccCCCcEEeecC-CCcc-cccc
Q 007616          109 LACWASGEICWCMESTWDGNNERRF--SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSH-TAIE-VLSE  184 (596)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~-~~i~-~lp~  184 (596)
                      ++.|....+|+  ...|.|+.+...  ..+++.+++.++...+..      .+|++++++++|++|+|++ |.++ .+|+
T Consensus        24 l~sW~~~~d~C--~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~------~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~   95 (313)
T d1ogqa_          24 LSSWLPTTDCC--NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY------PIPSSLANLPYLNFLYIGGINNLVGPIPP   95 (313)
T ss_dssp             GTTCCTTSCTT--TTCSTTEEECCSSSCCCEEEEEEECCCCSSCE------ECCGGGGGCTTCSEEEEEEETTEESCCCG
T ss_pred             CCCCCCCCCCC--CCcCCCeEEeCCCCcEEEEEEECCCCCCCCCC------CCChHHhcCcccccccccccccccccccc
Confidence            44565443332  123777766543  336888888776554422      6899999999999999997 6777 8999


Q ss_pred             ccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEeccCCCCCchhccchhh
Q 007616          185 SVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVGKGNCSGLKELRSLMH  264 (596)
Q Consensus       185 ~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~  264 (596)
                      +|+++++|++|++++|......|..+..+.+|+++++++|.....+|..++++++++++++.++.... .....+..+..
T Consensus        96 ~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~-~ip~~~~~l~~  174 (313)
T d1ogqa_          96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-AIPDSYGSFSK  174 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGCCCT
T ss_pred             ccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccc-ccccccccccc
Confidence            99999999999999995445556668999999999999999788899999999999999876554321 11223333333


Q ss_pred             ccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEeccCCCCCCCCCCCCCCCCc
Q 007616          265 LQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGTKFPAWLGQSSFENL  344 (596)
Q Consensus       265 L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  344 (596)
                      +...+.....    .........+..+. ...+++..+. .....+......++++.+++.++.....+..+.  .+++|
T Consensus       175 l~~~l~~~~n----~l~~~~~~~~~~l~-~~~l~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~--~~~~L  246 (313)
T d1ogqa_         175 LFTSMTISRN----RLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNL  246 (313)
T ss_dssp             TCCEEECCSS----EEEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGGCC--CCTTC
T ss_pred             cccccccccc----cccccccccccccc-cccccccccc-ccccccccccccccccccccccccccccccccc--ccccc
Confidence            3212222211    01111111222222 2234444332 334445566678889999998887665555555  67899


Q ss_pred             cEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeecccC
Q 007616          345 VVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDM  405 (596)
Q Consensus       345 ~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  405 (596)
                      +.|++++|+..+.+| .++++++|++|+|++|...+.+|. +.      .+++|+.+++.+.
T Consensus       247 ~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~------~L~~L~~l~l~~N  301 (313)
T d1ogqa_         247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG------NLQRFDVSAYANN  301 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-ST------TGGGSCGGGTCSS
T ss_pred             ccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cc------cCCCCCHHHhCCC
Confidence            999999998776777 688999999999999765546653 11      2566777766664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.68  E-value=5.3e-16  Score=150.04  Aligned_cols=246  Identities=18%  Similarity=0.202  Sum_probs=165.5

Q ss_pred             cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEcccccccccc-CCcccCCCccceeecCCCCcccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKL-FPDIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      +.++|..+.  +++++|+|++|+|+.+|+ +|.++++|++|++++| .+..+ |..+.++++|++|++++|. ++.+|..
T Consensus        22 L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~   97 (305)
T d1xkua_          22 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEK   97 (305)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEecccCCc-cCcCccc
Confidence            337887764  689999999999999986 6899999999999999 55555 5679999999999999998 8888875


Q ss_pred             ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCC-cchhhhhc
Q 007616          234 IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNK-IQTCVFEM  312 (596)
Q Consensus       234 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~  312 (596)
                      +.  ..++.|....+..      ..+..                        ..+.....+..+....+.. ........
T Consensus        98 ~~--~~l~~L~~~~n~l------~~l~~------------------------~~~~~~~~~~~l~~~~n~~~~~~~~~~~  145 (305)
T d1xkua_          98 MP--KTLQELRVHENEI------TKVRK------------------------SVFNGLNQMIVVELGTNPLKSSGIENGA  145 (305)
T ss_dssp             CC--TTCCEEECCSSCC------CBBCH------------------------HHHTTCTTCCEEECCSSCCCGGGBCTTG
T ss_pred             hh--hhhhhhhccccch------hhhhh------------------------hhhhccccccccccccccccccCCCccc
Confidence            43  3455554322211      11110                        0112222333333322211 11222334


Q ss_pred             cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616          313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS  391 (596)
Q Consensus       313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~  391 (596)
                      +..+++|+.+++.++....+|..    .+++|+.|++++|......+ .+.+++.++.|++++| .+..++.....    
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~----  216 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA----  216 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG----
T ss_pred             cccccccCccccccCCccccCcc----cCCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccccccc----
Confidence            45567888999988887777654    35789999999888665544 5778889999999887 45555443322    


Q ss_pred             CCCCCcceeecccCccccccceeEEecCCCCCCCCC---CCCCCCCEEEEeecc--Ch-------hccCCCCCCcceEEe
Q 007616          392 EPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP---QRFSSLERIVITSCE--QL-------LVSYTALPPLCELEI  459 (596)
Q Consensus       392 ~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p---~~l~~L~~L~l~~c~--~l-------~~~~~~l~~L~~L~l  459 (596)
                       .+++|++|+|+++               +++ .+|   ..+++|+.|++++|.  .+       .......++|+.|++
T Consensus       217 -~l~~L~~L~L~~N---------------~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         217 -NTPHLRELHLNNN---------------KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             -GSTTCCEEECCSS---------------CCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             -ccccceeeecccc---------------ccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence             2788999988884               233 333   247899999999875  11       122345788999999


Q ss_pred             cCCc
Q 007616          460 DGFS  463 (596)
Q Consensus       460 ~~c~  463 (596)
                      ++|+
T Consensus       280 ~~N~  283 (305)
T d1xkua_         280 FSNP  283 (305)
T ss_dssp             CSSS
T ss_pred             CCCc
Confidence            9987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=1.2e-14  Score=143.46  Aligned_cols=92  Identities=23%  Similarity=0.221  Sum_probs=67.5

Q ss_pred             ceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCc
Q 007616          136 NLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVN  215 (596)
Q Consensus       136 ~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~  215 (596)
                      +++.|++..+...         .+|+.   +++|++|++++|+|+++|..+   .+|+.|++++| .+..++. +  .++
T Consensus        39 ~l~~LdLs~~~L~---------~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n-~l~~l~~-l--p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLS---------SLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNN-NLKALSD-L--PPL   99 (353)
T ss_dssp             TCSEEECTTSCCS---------CCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSCCCS-C--CTT
T ss_pred             CCCEEEeCCCCCC---------CCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhc-ccchhhh-h--ccc
Confidence            4566666554333         56653   468999999999999998754   57888999988 6666653 2  146


Q ss_pred             cceeecCCCCccccccccccCCcccCCCCcEEe
Q 007616          216 LRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVV  248 (596)
Q Consensus       216 L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~  248 (596)
                      |++|++++|. +..+|. ++.+++|++|++.++
T Consensus       100 L~~L~L~~n~-l~~lp~-~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         100 LEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCEEECCSSC-CSSCCC-CTTCTTCCEEECCSS
T ss_pred             cccccccccc-cccccc-hhhhccceeeccccc
Confidence            9999999998 888885 678889998876443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=5.8e-15  Score=142.58  Aligned_cols=74  Identities=23%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             CCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccc-cccccCCcccCCCCc
Q 007616          168 HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEM-PLRIGKLTSLRTLAK  245 (596)
Q Consensus       168 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~l~~l~~L~~L~~  245 (596)
                      .++.++-++.+++++|..+.  +++++|++++| .++.+|+ .+.++++|++|++++|. +..+ |..+.++++|++|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEecc
Confidence            67788888889999998774  68999999999 8889986 58999999999999999 5565 445777777777764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=1.2e-16  Score=155.31  Aligned_cols=226  Identities=19%  Similarity=0.172  Sum_probs=167.6

Q ss_pred             CceeEEEEec-ccccccccccccccCcccccccCCCcEEeecCCCcccc-ccccccCCcCcEEEccccccccccCCcccC
Q 007616          135 RNLRHLSYLT-SRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVL-SESVSTLYNLQTLILEYCYRLKKLFPDIGN  212 (596)
Q Consensus       135 ~~~~~l~~~~-~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~  212 (596)
                      ..++.+.+.+ +.+.+        .+|++|+++++|++|++++|++..+ |..+..+.+|+++++++|.....+|..+++
T Consensus        76 ~~L~~L~Ls~~N~l~g--------~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~  147 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVG--------PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS  147 (313)
T ss_dssp             TTCSEEEEEEETTEES--------CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             cccccccccccccccc--------ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhcc
Confidence            3566666654 33333        7999999999999999999999965 566889999999999999888889999999


Q ss_pred             CCccceeecCCCCccccccccccCCccc-CCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCc
Q 007616          213 LVNLRHLKDSHSNLLEEMPLRIGKLTSL-RTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGK  291 (596)
Q Consensus       213 L~~L~~L~l~~~~~l~~lp~~l~~l~~L-~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~  291 (596)
                      +++|+++++++|...+.+|..++.+.++ +.++...+.... .....+..+...  .+.+...    ......+..+..+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~-~~~~~~~~l~~~--~l~l~~~----~~~~~~~~~~~~~  220 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLNLA--FVDLSRN----MLEGDASVLFGSD  220 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCCCS--EEECCSS----EEEECCGGGCCTT
T ss_pred             Ccccceeeccccccccccccccccccccccccccccccccc-cccccccccccc--ccccccc----ccccccccccccc
Confidence            9999999999999667899988888776 455443322211 112223322221  2222211    1112233446677


Q ss_pred             cccccccccccCCcchhhhhccCCCCCccEEEEeccCCC-CCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCcccee
Q 007616          292 KKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGYGGT-KFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNL  370 (596)
Q Consensus       292 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L  370 (596)
                      ++++.+++..+.. . ..+..+..+++|+.|++++|... .+|.++.  .+++|++|++++|+..+.+|.++++++|+.+
T Consensus       221 ~~l~~l~~~~~~l-~-~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~--~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l  296 (313)
T d1ogqa_         221 KNTQKIHLAKNSL-A-FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS  296 (313)
T ss_dssp             SCCSEEECCSSEE-C-CBGGGCCCCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCCSTTGGGSCGG
T ss_pred             ccccccccccccc-c-ccccccccccccccccCccCeecccCChHHh--CCCCCCEEECcCCcccccCCCcccCCCCCHH
Confidence            8899998877643 2 23456777899999999999976 7899887  7999999999999877789988999999999


Q ss_pred             eccCccCce
Q 007616          371 VIKGMAKVK  379 (596)
Q Consensus       371 ~L~~~~~l~  379 (596)
                      ++.+|+.+.
T Consensus       297 ~l~~N~~l~  305 (313)
T d1ogqa_         297 AYANNKCLC  305 (313)
T ss_dssp             GTCSSSEEE
T ss_pred             HhCCCcccc
Confidence            999987543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-15  Score=142.89  Aligned_cols=179  Identities=24%  Similarity=0.253  Sum_probs=116.2

Q ss_pred             cCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccC
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGK  236 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~  236 (596)
                      .+|+.+.  +++++|+|++|.|+.+| ..|.++++|++|+|++| .++.+|. ++.+++|++|++++|. +...|..+..
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~   98 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQT   98 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTT
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc-cccccccccccccccc-cccccccccc
Confidence            6777664  57999999999999887 46899999999999999 7888875 6889999999999998 7888888888


Q ss_pred             CcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCC
Q 007616          237 LTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPH  316 (596)
Q Consensus       237 l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~  316 (596)
                      +++|++|++.++....      +.                                                 ......+
T Consensus        99 l~~L~~L~l~~~~~~~------~~-------------------------------------------------~~~~~~l  123 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTS------LP-------------------------------------------------LGALRGL  123 (266)
T ss_dssp             CTTCCEEECCSSCCCC------CC-------------------------------------------------SSTTTTC
T ss_pred             ccccccccccccccce------ee-------------------------------------------------ccccccc
Confidence            8888888753322111      00                                                 0111223


Q ss_pred             CCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCCCCCC
Q 007616          317 YGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFP  395 (596)
Q Consensus       317 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~  395 (596)
                      .+++.|++++|....+|..... .+++++.+++++|......+ .++.+++|++|+|++|. ++.++.++..      ++
T Consensus       124 ~~l~~L~l~~n~l~~l~~~~~~-~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~------~~  195 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFG------SH  195 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT------TC
T ss_pred             cccccccccccccceecccccc-ccccchhcccccccccccCccccccccccceeecccCC-CcccChhHCC------CC
Confidence            4455555555555555443321 45666666666665332222 35566666666666653 4555554433      45


Q ss_pred             Ccceeeccc
Q 007616          396 SLETLCFED  404 (596)
Q Consensus       396 ~L~~L~l~~  404 (596)
                      +|+.|+|++
T Consensus       196 ~L~~L~L~~  204 (266)
T d1p9ag_         196 LLPFAFLHG  204 (266)
T ss_dssp             CCSEEECCS
T ss_pred             CCCEEEecC
Confidence            555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-13  Score=129.88  Aligned_cols=172  Identities=17%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      .+...+...+.+++.++.+|+.+.  +++++|+|++| .++.+|. .+.++++|++|++++|. ++.+|. ++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCC-cCCCcCHHHhhcccccccccccccc-cccccc-ccccccccc
Confidence            345566667999999999998764  58999999999 7888874 58999999999999998 777764 456667766


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      |++.++....                                                        ....+..+++|+.|
T Consensus        82 L~Ls~N~l~~--------------------------------------------------------~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          82 LDLSHNQLQS--------------------------------------------------------LPLLGQTLPALTVL  105 (266)
T ss_dssp             EECCSSCCSS--------------------------------------------------------CCCCTTTCTTCCEE
T ss_pred             cccccccccc--------------------------------------------------------cccccccccccccc
Confidence            6643221100                                                        01122334567777


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC--CCCCCCccceeeccCccCceEeCccccCCCCCCCCCCccee
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP--SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETL  400 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L  400 (596)
                      +++++....++.... ..+.+++.|++++|.. +.++  .+..+++|+.+++++|. ++.++....+     .+++|+.|
T Consensus       106 ~l~~~~~~~~~~~~~-~~l~~l~~L~l~~n~l-~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~~-----~l~~L~~L  177 (266)
T d1p9ag_         106 DVSFNRLTSLPLGAL-RGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLN-----GLENLDTL  177 (266)
T ss_dssp             ECCSSCCCCCCSSTT-TTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTT-----TCTTCCEE
T ss_pred             cccccccceeecccc-cccccccccccccccc-ceeccccccccccchhccccccc-ccccCccccc-----ccccccee
Confidence            777776655554433 2567777777777763 3333  34556777777777653 3333322211     14555555


Q ss_pred             eccc
Q 007616          401 CFED  404 (596)
Q Consensus       401 ~l~~  404 (596)
                      +|++
T Consensus       178 ~Ls~  181 (266)
T d1p9ag_         178 LLQE  181 (266)
T ss_dssp             ECCS
T ss_pred             eccc
Confidence            5554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=8.6e-15  Score=134.66  Aligned_cols=190  Identities=20%  Similarity=0.259  Sum_probs=122.6

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRT  242 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~  242 (596)
                      +..+.+|+.|++.+|.|++++ .+..+++|++|++++| .+..+++ +.++++|+++++++|. ++.++ +++.+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCc-eeecccc-cccccccccccccccc-ccccc-cccccccccc
Confidence            356788889999998888884 5888999999999888 6666643 7888899999998887 66664 4677777777


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEE
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKEL  322 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  322 (596)
                      +++..+...   .+..+.                             ..+.+..+.++.+...   ....+...++|+.|
T Consensus       112 l~l~~~~~~---~~~~~~-----------------------------~~~~~~~l~~~~~~~~---~~~~~~~~~~L~~L  156 (227)
T d1h6ua2         112 LDLTSTQIT---DVTPLA-----------------------------GLSNLQVLYLDLNQIT---NISPLAGLTNLQYL  156 (227)
T ss_dssp             EECTTSCCC---CCGGGT-----------------------------TCTTCCEEECCSSCCC---CCGGGGGCTTCCEE
T ss_pred             ccccccccc---ccchhc-----------------------------cccchhhhhchhhhhc---hhhhhccccccccc
Confidence            764322211   111111                             2223333333322211   11123345677777


Q ss_pred             EEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeec
Q 007616          323 KVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCF  402 (596)
Q Consensus       323 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  402 (596)
                      +++++.....+. +.  .+++|+.|++++|. ++.++.++++++|++|++++| .++.++. +      ..+++|+.|++
T Consensus       157 ~l~~n~~~~~~~-l~--~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~-l------~~l~~L~~L~l  224 (227)
T d1h6ua2         157 SIGNAQVSDLTP-LA--NLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNN-QISDVSP-L------ANTSNLFIVTL  224 (227)
T ss_dssp             ECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTS-CCCBCGG-G------TTCTTCCEEEE
T ss_pred             cccccccccchh-hc--ccccceecccCCCc-cCCChhhcCCCCCCEEECcCC-cCCCCcc-c------ccCCCCCEEEe
Confidence            777776555443 22  57788888888875 566777778888888888887 4555542 2      22788888877


Q ss_pred             cc
Q 007616          403 ED  404 (596)
Q Consensus       403 ~~  404 (596)
                      ++
T Consensus       225 sn  226 (227)
T d1h6ua2         225 TN  226 (227)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=131.95  Aligned_cols=208  Identities=19%  Similarity=0.158  Sum_probs=125.7

Q ss_pred             cccCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR  233 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~  233 (596)
                      +..+|..+.  +.+++|+|++|+|+.+|+ .|.++++|++|+++++ .+..++. .+..+..++.++...+..++.++..
T Consensus        23 L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccccccccccccch
Confidence            336776653  578999999999998875 6899999999999998 6665554 4677888999888766667777544


Q ss_pred             -ccCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhc
Q 007616          234 -IGKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEM  312 (596)
Q Consensus       234 -l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  312 (596)
                       +.++++|++|++..+..... .                             ...+....+|+.+++..+.. .......
T Consensus       100 ~~~~l~~L~~L~l~~n~~~~~-~-----------------------------~~~~~~~~~L~~l~l~~N~l-~~i~~~~  148 (284)
T d1ozna_         100 TFHGLGRLHTLHLDRCGLQEL-G-----------------------------PGLFRGLAALQYLYLQDNAL-QALPDDT  148 (284)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-C-----------------------------TTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             hhcccccCCEEecCCcccccc-c-----------------------------ccccchhcccchhhhccccc-cccChhH
Confidence             78888888887533322110 0                             01123334455555544432 1111233


Q ss_pred             cCCCCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCC-CCCCCCccceeeccCccCceEeCccccCCCCC
Q 007616          313 LKPHYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCS  391 (596)
Q Consensus       313 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~  391 (596)
                      +...++|+.|++++|....++.... ..+++|+.+++++|......| .++.+++|++|++++|.. ..++....+    
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f-~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i-~~~~~~~~~----  222 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTEALA----  222 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCHHHHT----
T ss_pred             hccccchhhcccccCcccccchhhh-ccccccchhhhhhccccccChhHhhhhhhccccccccccc-ccccccccc----
Confidence            4455667777777766655543221 156677777777766444333 466677777777776543 233222211    


Q ss_pred             CCCCCcceeeccc
Q 007616          392 EPFPSLETLCFED  404 (596)
Q Consensus       392 ~~~~~L~~L~l~~  404 (596)
                       .+++|+.|++++
T Consensus       223 -~~~~L~~L~l~~  234 (284)
T d1ozna_         223 -PLRALQYLRLND  234 (284)
T ss_dssp             -TCTTCCEEECCS
T ss_pred             -cccccCEEEecC
Confidence             155666666655

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.49  E-value=8.1e-13  Score=129.92  Aligned_cols=75  Identities=24%  Similarity=0.299  Sum_probs=54.4

Q ss_pred             ccCCCCCCcceEEecCCcccceeeEecccccccccCCcccccccccccchhhhccccccccccccccceecccCCCCCCC
Q 007616          446 VSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESLLDGLQKLSHITRISMVGSLLVYIAEGGEFPQL  525 (596)
Q Consensus       446 ~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~l~~L~~L~~l~~c~~~~~~l~~~~~~~~~~~L  525 (596)
                      .....+++|++|++++|...                      .+|.. +++|+.| ++++|.     ++++|.       
T Consensus       278 ~~~~~~~~L~~L~Ls~N~l~----------------------~lp~~-~~~L~~L-~L~~N~-----L~~l~~-------  321 (353)
T d1jl5a_         278 SLCDLPPSLEELNVSNNKLI----------------------ELPAL-PPRLERL-IASFNH-----LAEVPE-------  321 (353)
T ss_dssp             EECCCCTTCCEEECCSSCCS----------------------CCCCC-CTTCCEE-ECCSSC-----CSCCCC-------
T ss_pred             cccccCCCCCEEECCCCccC----------------------ccccc-cCCCCEE-ECCCCc-----CCcccc-------
Confidence            34445788999999888611                      23322 6789999 998886     555544       


Q ss_pred             CCCCCCCCCCCCCeeecCCCCCCccCCCCCCCCCccEEEEe
Q 007616          526 ESLSFVGNLTSLERLELPRCPVLRSFPENVLPPSLVYLSIY  566 (596)
Q Consensus       526 ~~l~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~  566 (596)
                             .+++|++|++++|+ ++++|.  .+.+|+.|.+.
T Consensus       322 -------~~~~L~~L~L~~N~-L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         322 -------LPQNLKQLHVEYNP-LREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             -------CCTTCCEEECCSSC-CSSCCC--CCTTCCEEECC
T ss_pred             -------ccCCCCEEECcCCc-CCCCCc--cccccCeeECc
Confidence                   24689999999976 999996  67789988764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.5e-13  Score=126.89  Aligned_cols=69  Identities=14%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             EEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCC
Q 007616          171 YLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  243 (596)
Q Consensus       171 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L  243 (596)
                      ..+.++..++++|..+.  .++++|+|++| .++.+|. .+.++++|++|++++|. +..++.. +..+..++.+
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l   85 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQL   85 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-cccccccccccccccccc
Confidence            34667778888887664  67899999999 7888886 48999999999999998 6666554 4444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=3.7e-14  Score=128.37  Aligned_cols=76  Identities=22%  Similarity=0.366  Sum_probs=58.2

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      .+..|+.|+++++.++.++ .+..+++|++|++++| .++.++. ++.+++|++|++++|. ++.+| .+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccc-cccCcccccccccccc-ccccc-cccccccccccc
Confidence            4667888888888888775 3778888888888888 6777763 6788888888888887 77776 467777777776


Q ss_pred             c
Q 007616          245 K  245 (596)
Q Consensus       245 ~  245 (596)
                      +
T Consensus       119 l  119 (210)
T d1h6ta2         119 L  119 (210)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.8e-13  Score=127.03  Aligned_cols=191  Identities=16%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             cCcccccccCCCcEEeecCCCcccccc-ccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEVLSE-SVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|+.+.  +++++|++++|.|+.+|. .|.++++|++|++++|.....+|. .+.++++++++++..+..+..++.. +
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            6776553  589999999999999876 578999999999999955555544 4788999999998765546666554 7


Q ss_pred             cCCcccCCCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccC
Q 007616          235 GKLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLK  314 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~  314 (596)
                      .++++|++|++.++..........+..+..+. .....+                  ..+..+.           ...+.
T Consensus       100 ~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~-~~~~~n------------------~~l~~i~-----------~~~~~  149 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL-LDIQDN------------------INIHTIE-----------RNSFV  149 (242)
T ss_dssp             ECCTTCCEEEEESCCCCSCCCCTTTCBSSCEE-EEEESC------------------TTCCEEC-----------TTSST
T ss_pred             cccccccccccchhhhcccccccccccccccc-cccccc------------------ccccccc-----------ccccc
Confidence            88999999988766554433333333333222 111110                  0111111           01111


Q ss_pred             C-CCCccEEEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCC--CCCCCccceeeccCccCceEeCc
Q 007616          315 P-HYGLKELKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPS--VGHLPSLKNLVIKGMAKVKSVGL  383 (596)
Q Consensus       315 ~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~--l~~l~~L~~L~L~~~~~l~~~~~  383 (596)
                      . ...++.|++.++....++....  ...+++.+....+..++.+|.  +.++++|+.|++++|. ++.++.
T Consensus       150 ~~~~~l~~L~l~~n~l~~i~~~~~--~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         150 GLSFESVILWLNKNGIQEIHNCAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             TSBSSCEEEECCSSCCCEECTTTT--TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             cccccceeeecccccccccccccc--cchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            2 2467788888887777766544  456777776666666777773  7889999999998865 556654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=1e-13  Score=124.29  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=59.9

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCC
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTL  243 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L  243 (596)
                      ..+.++++|+++++.++.++ .+..+++|++|++++| .+..++. ++++++|++|++++|. +..+|. ++.+++|++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccCccc-ccCCcccccccccccc-cccccc-cccccccccc
Confidence            45778888999988888874 4788889999999888 6777764 8888889999998887 666653 6667777666


Q ss_pred             Cc
Q 007616          244 AK  245 (596)
Q Consensus       244 ~~  245 (596)
                      ++
T Consensus       112 ~l  113 (199)
T d2omxa2         112 TL  113 (199)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=2.1e-14  Score=132.07  Aligned_cols=210  Identities=15%  Similarity=0.152  Sum_probs=149.4

Q ss_pred             ccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCC
Q 007616          165 ELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLA  244 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~  244 (596)
                      .+.++..++++.+.++... .+..+.+|++|++.+| .++.+ +++.++++|++|++++|. +..+++ +.++++|++++
T Consensus        17 ~l~~~~~~~l~~~~~~d~~-~~~~l~~L~~L~l~~~-~i~~l-~~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~   91 (227)
T d1h6ua2          17 ALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGT-GVTTI-EGVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELE   91 (227)
T ss_dssp             HHHHHHHHHTTCSSTTSEE-CHHHHHTCCEEECTTS-CCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEE
T ss_pred             HHHHHHHHHhCCCCcCCcC-CHHHcCCcCEEECCCC-CCCcc-hhHhcCCCCcEeecCCce-eecccc-ccccccccccc
Confidence            3445555677777777653 4678899999999999 78888 469999999999999998 777654 78888888887


Q ss_pred             cEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEE
Q 007616          245 KFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKV  324 (596)
Q Consensus       245 ~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l  324 (596)
                      +.++...   .+..                             +.++++|+.+.++.+...   ....+...+.+..+.+
T Consensus        92 ~~~n~~~---~i~~-----------------------------l~~l~~L~~l~l~~~~~~---~~~~~~~~~~~~~l~~  136 (227)
T d1h6ua2          92 LSGNPLK---NVSA-----------------------------IAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYL  136 (227)
T ss_dssp             CCSCCCS---CCGG-----------------------------GTTCTTCCEEECTTSCCC---CCGGGTTCTTCCEEEC
T ss_pred             ccccccc---cccc-----------------------------cccccccccccccccccc---ccchhccccchhhhhc
Confidence            5443321   1111                             334455666666554321   2233455678899998


Q ss_pred             eccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcceeeccc
Q 007616          325 RGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFED  404 (596)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  404 (596)
                      .++.....+.+.   .+++|+.|++++|. ....+.++++++|+.|++++| .++.++. +..      +++|+.|++++
T Consensus       137 ~~~~~~~~~~~~---~~~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~------l~~L~~L~Ls~  204 (227)
T d1h6ua2         137 DLNQITNISPLA---GLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP-LAS------LPNLIEVHLKN  204 (227)
T ss_dssp             CSSCCCCCGGGG---GCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG-GGG------CTTCCEEECTT
T ss_pred             hhhhhchhhhhc---cccccccccccccc-cccchhhcccccceecccCCC-ccCCChh-hcC------CCCCCEEECcC
Confidence            887765554432   57899999999987 445566889999999999997 4555542 322      89999999999


Q ss_pred             CccccccceeEEecCCCCCCCCCCCCCCCCEEEEee
Q 007616          405 MQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITS  440 (596)
Q Consensus       405 ~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~  440 (596)
                      + +++++.        .+.+     +++|+.|++++
T Consensus       205 N-~lt~i~--------~l~~-----l~~L~~L~lsn  226 (227)
T d1h6ua2         205 N-QISDVS--------PLAN-----TSNLFIVTLTN  226 (227)
T ss_dssp             S-CCCBCG--------GGTT-----CTTCCEEEEEE
T ss_pred             C-cCCCCc--------cccc-----CCCCCEEEeeC
Confidence            7 566653        3444     67899999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.2e-12  Score=117.12  Aligned_cols=169  Identities=19%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             CCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEE
Q 007616          168 HLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV  247 (596)
Q Consensus       168 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~  247 (596)
                      +...+.++.+.++..+. ...+.++++|++++| .+..++ ++..+++|++|++++|. ++.++. ++++++|++|++..
T Consensus        19 ~~i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~   93 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHHTTCSSTTSEEC-HHHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCS
T ss_pred             HHHHHHhCCCCCCCccC-HHHhcCCCEEECCCC-CCCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCcccccccccc
Confidence            33444566777765432 357899999999999 788874 68999999999999998 888765 88999999988644


Q ss_pred             eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccEEEEecc
Q 007616          248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKELKVRGY  327 (596)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  327 (596)
                      +....   +..                             +.++++|+.++++++....   ...+..+++|+.|++++|
T Consensus        94 n~~~~---~~~-----------------------------l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~l~~n  138 (199)
T d2omxa2          94 NQIAD---ITP-----------------------------LANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSN  138 (199)
T ss_dssp             SCCCC---CGG-----------------------------GTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEECCSS
T ss_pred             ccccc---ccc-----------------------------ccccccccccccccccccc---ccccchhhhhHHhhhhhh
Confidence            33211   111                             3345556666665554322   223556778888888888


Q ss_pred             CCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccCccCceEe
Q 007616          328 GGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKGMAKVKSV  381 (596)
Q Consensus       328 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~  381 (596)
                      ....++. +.  .+++|+.|++.+|. ++.++.++++++|+.|++++|. ++.+
T Consensus       139 ~l~~~~~-l~--~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~-i~~i  187 (199)
T d2omxa2         139 TISDISA-LS--GLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNK-VSDI  187 (199)
T ss_dssp             CCCCCGG-GT--TCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCC
T ss_pred             hhccccc-cc--cccccccccccccc-ccCCccccCCCCCCEEECCCCC-CCCC
Confidence            7766553 33  57888899988886 5567778888899999998874 5544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.1e-11  Score=114.63  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCcccccccc-ccCCcccCCCCc
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAK  245 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~  245 (596)
                      .++++.++..++.+|..+.  .++++|++++| .++.+|.. +.++++|++|++++|.....+|.+ +..+++++++..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            4788999999999998663  58999999999 78888874 789999999999999855555543 666777766643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=8.6e-12  Score=112.48  Aligned_cols=147  Identities=18%  Similarity=0.217  Sum_probs=107.3

Q ss_pred             cccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccC
Q 007616          162 DIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLR  241 (596)
Q Consensus       162 ~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~  241 (596)
                      .+..+++|++|++++|.|+.+++ ++.+++|++|++++| .++.+| .+..+++|+.|++++|. ...++ .+..+++++
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~~~-~~~~~-~l~~l~~l~  137 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLE  137 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSC-CCCCG-GGGGCTTCC
T ss_pred             hHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-cccccc-ccccccccccccccccc-ccccc-ccccccccc
Confidence            36789999999999999999874 789999999999999 788887 58999999999999998 55554 366666666


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhhhccCCCCCccE
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVFEMLKPHYGLKE  321 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  321 (596)
                      .+++..+...      ..                                                   .....+++|+.
T Consensus       138 ~l~~~~n~l~------~~---------------------------------------------------~~~~~l~~L~~  160 (210)
T d1h6ta2         138 SLYLGNNKIT------DI---------------------------------------------------TVLSRLTKLDT  160 (210)
T ss_dssp             EEECCSSCCC------CC---------------------------------------------------GGGGGCTTCSE
T ss_pred             cccccccccc------cc---------------------------------------------------ccccccccccc
Confidence            5543221110      00                                                   01122456777


Q ss_pred             EEEeccCCCCCCCCCCCCCCCCccEEEEecCCCCCCCCCCCCCCccceeeccC
Q 007616          322 LKVRGYGGTKFPAWLGQSSFENLVVLRFKNCNQCTTLPSVGHLPSLKNLVIKG  374 (596)
Q Consensus       322 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~l~~l~~l~~L~~L~L~~  374 (596)
                      +++++|....++. +.  .+++|+.|++++|. ++.++.++++++|++|+|++
T Consensus       161 l~l~~n~l~~i~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         161 LSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc-cc--CCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            7777776666554 23  57888888888885 56677788888888888764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.2e-12  Score=105.19  Aligned_cols=82  Identities=21%  Similarity=0.224  Sum_probs=50.4

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccc--cccCCccc
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPL--RIGKLTSL  240 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~l~~l~~L  240 (596)
                      ++.+++|++|++++|.++.+|+.++.+++|++|++++| .++.+| +++++++|++|++++|. +..+|.  .++++++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCCCc-cCCCCCchhhcCCCCC
Confidence            55666666666666666666666666666666666666 555554 36666666666666666 555542  35555566


Q ss_pred             CCCCcEE
Q 007616          241 RTLAKFV  247 (596)
Q Consensus       241 ~~L~~~~  247 (596)
                      ++|++.+
T Consensus        93 ~~L~l~~   99 (124)
T d1dcea3          93 VLLNLQG   99 (124)
T ss_dssp             CEEECTT
T ss_pred             CEEECCC
Confidence            6655433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.3e-12  Score=108.30  Aligned_cols=106  Identities=21%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             ccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-ccCCcccC
Q 007616          163 IAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLR  241 (596)
Q Consensus       163 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~  241 (596)
                      +.+...+|.|+|++|+|+.+|..+..+++|++|++++| .+..++ .+..+++|++|++++|. +..+|.+ +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccC-CcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            56677889999999999988876778899999999998 788884 58889999999999998 8888776 45688888


Q ss_pred             CCCcEEeccCCCCCchhccchhhccceEEEc
Q 007616          242 TLAKFVVGKGNCSGLKELRSLMHLQEKLTIS  272 (596)
Q Consensus       242 ~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~  272 (596)
                      +|++.++.......+..+..++.|+ .+.+.
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~-~L~l~  120 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLT-YLCIL  120 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCC-EEECC
T ss_pred             cceeccccccccccccccccccccc-hhhcC
Confidence            8887666544333333333344443 34443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.5e-12  Score=123.57  Aligned_cols=83  Identities=22%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             ccCCCcEEeecCCCcc--ccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccc--ccccccCCccc
Q 007616          165 ELKHLRYLDFSHTAIE--VLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEE--MPLRIGKLTSL  240 (596)
Q Consensus       165 ~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~l~~l~~L  240 (596)
                      ...+|++||++++.+.  .++..+..+++|++|++++|......+..++++++|++|++++|..++.  +..-...+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            4457888888888776  3556677888888888888843344556677888888888888765553  22223456677


Q ss_pred             CCCCcEE
Q 007616          241 RTLAKFV  247 (596)
Q Consensus       241 ~~L~~~~  247 (596)
                      ++|++.+
T Consensus       124 ~~L~ls~  130 (284)
T d2astb2         124 DELNLSW  130 (284)
T ss_dssp             CEEECCC
T ss_pred             ccccccc
Confidence            7776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-12  Score=123.14  Aligned_cols=202  Identities=14%  Similarity=0.109  Sum_probs=106.3

Q ss_pred             CcEEeecCCCccccccccccCCcCcEEEcccccccc-ccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEE
Q 007616          169 LRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLK-KLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFV  247 (596)
Q Consensus       169 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~  247 (596)
                      ...+.++.+.+...........+|++||+++|.... .++..+.++++|++|++++|......+..++++++|++|++.+
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            455566665555433444566789999999883222 2444577889999999999974444556677888888887644


Q ss_pred             eccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchhhh-hcc-CCCCCccEEEEe
Q 007616          248 VGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTCVF-EML-KPHYGLKELKVR  325 (596)
Q Consensus       248 ~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~l-~~~~~L~~L~l~  325 (596)
                      +...+..+                            .......+++|++|+++++........ ..+ ..+++|+.|+++
T Consensus       105 c~~itd~~----------------------------l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2         105 CSGFSEFA----------------------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             CBSCCHHH----------------------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccccc----------------------------cchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            32211111                            111223345555555555433222111 111 123455666655


Q ss_pred             ccCC--C--CCCCCCCCCCCCCccEEEEecCCCCC--CCCCCCCCCccceeeccCccCceEeCccccCCCCCCCCCCcce
Q 007616          326 GYGG--T--KFPAWLGQSSFENLVVLRFKNCNQCT--TLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLET  399 (596)
Q Consensus       326 ~~~~--~--~~~~~~~~~~~~~L~~L~l~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~  399 (596)
                      ++..  .  .+.....  .+++|++|++++|..++  .+..++++++|++|++++|..+........     ..+|+|+.
T Consensus       157 ~~~~~i~~~~l~~l~~--~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L-----~~~~~L~~  229 (284)
T d2astb2         157 GYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-----GEIPTLKT  229 (284)
T ss_dssp             SCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-----GGCTTCCE
T ss_pred             cccccccccccccccc--ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH-----hcCCCCCE
Confidence            4321  0  0111111  34566666666665443  233455666666666666655443222111     12566666


Q ss_pred             eecccC
Q 007616          400 LCFEDM  405 (596)
Q Consensus       400 L~l~~~  405 (596)
                      |++.++
T Consensus       230 L~l~~~  235 (284)
T d2astb2         230 LQVFGI  235 (284)
T ss_dssp             EECTTS
T ss_pred             EeeeCC
Confidence            666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.6e-11  Score=98.61  Aligned_cols=99  Identities=26%  Similarity=0.338  Sum_probs=84.8

Q ss_pred             cEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCcEEec
Q 007616          170 RYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAKFVVG  249 (596)
Q Consensus       170 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~~~~~  249 (596)
                      |+|++++|.++.++. ++.+++|++|++++| .++.+|+.++.+++|++|++++|. ++.+| +++++++|++|++.++.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCC-ccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            789999999998874 899999999999999 889999889999999999999998 88886 48999999999988887


Q ss_pred             cCCCCCchhccchhhccceEEEcC
Q 007616          250 KGNCSGLKELRSLMHLQEKLTISG  273 (596)
Q Consensus       250 ~~~~~~l~~l~~L~~L~~~l~i~~  273 (596)
                      ......+..+..+++|+ .+.+.+
T Consensus        77 i~~~~~~~~l~~~~~L~-~L~l~~   99 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLV-LLNLQG   99 (124)
T ss_dssp             CCSSSTTGGGGGCTTCC-EEECTT
T ss_pred             cCCCCCchhhcCCCCCC-EEECCC
Confidence            76666666677777776 777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.02  E-value=8.5e-12  Score=110.94  Aligned_cols=113  Identities=27%  Similarity=0.271  Sum_probs=88.8

Q ss_pred             cccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccccc
Q 007616          156 LHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIG  235 (596)
Q Consensus       156 l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~  235 (596)
                      +..+|.++..+++|++|++++|.|+.++ .+..+++|++|++++| .++.+|.....+++|++|++++|. ++.++ .+.
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~-~~~  112 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GIE  112 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEE-CCCHH-HHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccc-cccccccccccccccccccccccc-ccccc-ccc
Confidence            3367888999999999999999999986 5899999999999999 788888766667889999999997 77775 488


Q ss_pred             CCcccCCCCcEEeccCCCCCchhccchhhccceEEEcC
Q 007616          236 KLTSLRTLAKFVVGKGNCSGLKELRSLMHLQEKLTISG  273 (596)
Q Consensus       236 ~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~  273 (596)
                      .+++|++|++.++.......+..+..+++|+ .+.+.+
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~-~L~L~~  149 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLE-DLLLAG  149 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCS-EEEECS
T ss_pred             ccccccccccccchhccccccccccCCCccc-eeecCC
Confidence            8999999998877654433333444455554 555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.8e-10  Score=98.45  Aligned_cols=104  Identities=23%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCCcc-cCC
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFPDI-GNL  213 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i-~~L  213 (596)
                      .+++.+.+.++.+.         .+|..+..+++|++|++++|.|+.++ .+..+++|++|++++| .+..+|..+ ..+
T Consensus        18 ~~lr~L~L~~n~I~---------~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l   86 (162)
T d1a9na_          18 VRDRELDLRGYKIP---------VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQAL   86 (162)
T ss_dssp             TSCEEEECTTSCCC---------SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred             CcCcEEECCCCCCC---------ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCccccccc
Confidence            35677887776655         45555678899999999999999985 5899999999999999 788888764 679


Q ss_pred             CccceeecCCCCccccccc--cccCCcccCCCCcEEecc
Q 007616          214 VNLRHLKDSHSNLLEEMPL--RIGKLTSLRTLAKFVVGK  250 (596)
Q Consensus       214 ~~L~~L~l~~~~~l~~lp~--~l~~l~~L~~L~~~~~~~  250 (596)
                      ++|++|++++|. +..++.  .+..+++|++|++.++..
T Consensus        87 ~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          87 PDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             TTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             cccccceecccc-ccccccccccccccccchhhcCCCcc
Confidence            999999999998 777764  478889999998766544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=2.2e-09  Score=94.72  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             CCceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccccc-cccccCCcCcEEEccccccccccCCc-cc
Q 007616          134 SRNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEVLS-ESVSTLYNLQTLILEYCYRLKKLFPD-IG  211 (596)
Q Consensus       134 ~~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~-i~  211 (596)
                      +..++.|.+..+.+...       .-+..|..+++|+.|++++|.+..++ ..+..+++|++|++++| .+..+|+. |.
T Consensus        28 p~~l~~L~Ls~N~i~~~-------~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~   99 (192)
T d1w8aa_          28 PLHTTELLLNDNELGRI-------SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFL   99 (192)
T ss_dssp             CTTCSEEECCSCCCCSB-------CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSST
T ss_pred             CCCCCEEEeCCCCCccc-------ccccccCCCceEeeeeccccccccccccccccccccceeeeccc-cccccCHHHHh
Confidence            34555565555544321       11234566666666666666666443 45566666666666666 55555443 56


Q ss_pred             CCCccceeecCCCCcccccccc-ccCCcccCCCCcEEe
Q 007616          212 NLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTLAKFVV  248 (596)
Q Consensus       212 ~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L~~~~~  248 (596)
                      ++++|++|+|++|. ++.+|++ +..+++|++|++.++
T Consensus       100 ~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             TCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCCcccccccCCcc-ccccCHHHhcCCccccccccccc
Confidence            66666666666666 5665554 556666666655433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.6e-12  Score=127.94  Aligned_cols=364  Identities=18%  Similarity=0.127  Sum_probs=175.3

Q ss_pred             cccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccccc-----cCCccc-CCCccceeecCCCCcccc-
Q 007616          162 DIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLKK-----LFPDIG-NLVNLRHLKDSHSNLLEE-  229 (596)
Q Consensus       162 ~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~-~L~~L~~L~l~~~~~l~~-  229 (596)
                      -+..++++|+|+|++|.++     .++..+..+++|++|+|++| .++.     +...+. ...+|++|++++|. ++. 
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~   99 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA   99 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-cccc
Confidence            3466788899999999876     34556678889999999888 4432     222232 23578999999887 543 


Q ss_pred             ----ccccccCCcccCCCCcEEeccCCCCCchhcc-chhhc---cceEEEcCcCCCCCHhhHHHHhcCCccccccccccc
Q 007616          230 ----MPLRIGKLTSLRTLAKFVVGKGNCSGLKELR-SLMHL---QEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKW  301 (596)
Q Consensus       230 ----lp~~l~~l~~L~~L~~~~~~~~~~~~l~~l~-~L~~L---~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  301 (596)
                          ++..+..+++|++|++.++.... .+...+. .+...   ......................+.....++.+.++.
T Consensus       100 ~~~~l~~~l~~~~~L~~L~L~~N~i~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~  178 (460)
T d1z7xw1         100 GCGVLSSTLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  178 (460)
T ss_dssp             GHHHHHHHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             ccccccchhhccccccccccccccchh-hhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccc
Confidence                44557778888888875544321 1111111 11100   001111111111111122233344455666666655


Q ss_pred             cCCcchh---hhhcc-CCCCCccEEEEeccCCCCCC-----CCCCCCCCCCccEEEEecCCCCCC-----CC-CCCCCCc
Q 007616          302 GNKIQTC---VFEML-KPHYGLKELKVRGYGGTKFP-----AWLGQSSFENLVVLRFKNCNQCTT-----LP-SVGHLPS  366 (596)
Q Consensus       302 ~~~~~~~---~~~~l-~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-----l~-~l~~l~~  366 (596)
                      +......   ....+ ........+.+.++......     ....  ..+.++.+.+.++.....     .. .....+.
T Consensus       179 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~  256 (460)
T d1z7xw1         179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSR  256 (460)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhccccccc--ccccccccchhhccccccccchhhccccccccc
Confidence            4321111   11111 11234455555544322110     0001  245667777776653211     11 1234567


Q ss_pred             cceeeccCccCceEeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCCCCCCCCCEEEEeeccCh--
Q 007616          367 LKNLVIKGMAKVKSVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLPQRFSSLERIVITSCEQL--  444 (596)
Q Consensus       367 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p~~l~~L~~L~l~~c~~l--  444 (596)
                      ++.+++++|............  .....+.++.+++++.+ +.+-      +...+...+....+.|+.+.+++|.--  
T Consensus       257 l~~l~l~~n~i~~~~~~~~~~--~l~~~~~l~~l~l~~n~-i~~~------~~~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         257 LRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNE-LGDE------GARLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCC-CHHH------HHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccc-cccc------ccchhhccccccccccccccccccchhhh
Confidence            777777776422111000000  00114566666665521 1000      000000011223456777777776521  


Q ss_pred             -----hccCCCCCCcceEEecCCcccceeeEecccccccccCCccccccccccc---chhhhccccccccccccccceec
Q 007616          445 -----LVSYTALPPLCELEIDGFSELFLILQIQGWRSRAEILPQEIRIPNQESL---LDGLQKLSHITRISMVGSLLVYI  516 (596)
Q Consensus       445 -----~~~~~~l~~L~~L~l~~c~~ll~~l~~~~~~~l~~~~p~l~~l~~p~~~---l~~L~~L~~l~~c~~~~~~l~~~  516 (596)
                           ...+...++|++|++++|..--     .+...            ++..+   .+.|+.| ++++|...+.++..+
T Consensus       328 ~~~~l~~~~~~~~~L~~L~Ls~N~i~~-----~g~~~------------l~~~l~~~~~~L~~L-~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         328 CCSHFSSVLAQNRFLLELQISNNRLED-----AGVRE------------LCQGLGQPGSVLRVL-WLADCDVSDSSCSSL  389 (460)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHH-----HHHHH------------HHHHHTSTTCCCCEE-ECTTSCCCHHHHHHH
T ss_pred             hhhhcccccccccchhhhheeeecccC-----cccch------------hhhhhhcccCCCCEE-ECCCCCCChHHHHHH
Confidence                 1223346678888888775210     00000            11111   3457788 888887544333334


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCeeecCCCCCCcc-----CCC--CCCCCCccEEEEecCc
Q 007616          517 AEGGEFPQLESLSFVGNLTSLERLELPRCPVLRS-----FPE--NVLPPSLVYLSIYLCP  569 (596)
Q Consensus       517 ~~~~~~~~L~~l~~~~~l~~L~~L~l~~c~~l~~-----lp~--~~~~~~L~~L~i~~C~  569 (596)
                      ..           .+...++|++|+++++ .++.     +..  ......|+.|++.++.
T Consensus       390 ~~-----------~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         390 AA-----------TLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HH-----------HHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HH-----------HHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            33           3455678888888885 4543     110  0112468888888764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=3e-09  Score=93.93  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=74.1

Q ss_pred             cCcccccccCCCcEEeecCCCccc-c-ccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCcccccccc-c
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIEV-L-SESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLR-I  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~~-l-p~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-l  234 (596)
                      .+|..+.  .++++|+|++|.|+. + +..++.+++|+.|++++|......+..+..+++|++|++++|. +..+|++ +
T Consensus        22 ~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F   98 (192)
T d1w8aa_          22 EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMF   98 (192)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSS
T ss_pred             ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHH
Confidence            6777663  689999999999974 4 3567999999999999994444445668899999999999998 8888776 8


Q ss_pred             cCCcccCCCCcEEecc
Q 007616          235 GKLTSLRTLAKFVVGK  250 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~  250 (596)
                      .++++|++|++.++..
T Consensus        99 ~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             hCCCcccccccCCccc
Confidence            8899999999866554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.75  E-value=1.8e-10  Score=102.14  Aligned_cols=80  Identities=18%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CCcEEeecCC--CccccccccccCCcCcEEEccccccccccCCcccCCCccceeecCCCCccccccccccCCcccCCCCc
Q 007616          168 HLRYLDFSHT--AIEVLSESVSTLYNLQTLILEYCYRLKKLFPDIGNLVNLRHLKDSHSNLLEEMPLRIGKLTSLRTLAK  245 (596)
Q Consensus       168 ~L~~L~L~~~--~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~~  245 (596)
                      .++.+++++.  .++.+|.+++.+++|++|++++| .++.++ .++.+++|++|++++|. ++.+|.....+++|++|++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEEC
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECccc-CCCCcc-cccCCccccChhhcccc-ccccccccccccccccccc
Confidence            3445566554  57788889999999999999999 788886 59999999999999998 8888765555677888877


Q ss_pred             EEecc
Q 007616          246 FVVGK  250 (596)
Q Consensus       246 ~~~~~  250 (596)
                      .++..
T Consensus       101 ~~N~i  105 (198)
T d1m9la_         101 SYNQI  105 (198)
T ss_dssp             SEEEC
T ss_pred             ccccc
Confidence            66543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.7e-08  Score=85.21  Aligned_cols=91  Identities=16%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             cCcccccccCCCcEEeecCC-Cccccc-cccccCCcCcEEEccccccccccC-CcccCCCccceeecCCCCccccccccc
Q 007616          158 ELPNDIAELKHLRYLDFSHT-AIEVLS-ESVSTLYNLQTLILEYCYRLKKLF-PDIGNLVNLRHLKDSHSNLLEEMPLRI  234 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~-~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~l  234 (596)
                      ..|..+..+++|+.|+++++ .++.++ ..|.++++|+.|++++| .++.++ ..+..+++|++|++++|. ++.+|.++
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~   99 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT   99 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceeccCCC-CcccChhh
Confidence            56777888999999999876 589886 46899999999999999 788885 448999999999999999 89999886


Q ss_pred             cCCcccCCCCcEEecc
Q 007616          235 GKLTSLRTLAKFVVGK  250 (596)
Q Consensus       235 ~~l~~L~~L~~~~~~~  250 (596)
                      ....+|++|++.++..
T Consensus       100 ~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3         100 VQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TCSCCCCEEECCSSCC
T ss_pred             hccccccccccCCCcc
Confidence            6666788887765544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.9e-07  Score=75.05  Aligned_cols=78  Identities=21%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             cCCCcEEeecCCCccccccccccCCcCcEEEccccccccccCC-cccCCCccceeecCCCCcccccccc-ccCCcccCCC
Q 007616          166 LKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLFP-DIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTSLRTL  243 (596)
Q Consensus       166 l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~L~~L  243 (596)
                      +.....++.+++.+.+.|..+..+++|+.|+++++..++.++. .|.++++|+.|++++|. +..++++ +..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccce
Confidence            3445567778888888888888888888888877656777764 47888888888888887 6666543 4444444444


Q ss_pred             C
Q 007616          244 A  244 (596)
Q Consensus       244 ~  244 (596)
                      +
T Consensus        86 ~   86 (156)
T d2ifga3          86 N   86 (156)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.37  E-value=6e-09  Score=101.33  Aligned_cols=89  Identities=16%  Similarity=0.093  Sum_probs=62.9

Q ss_pred             cCcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccccc-----------cCCcccCCCccceeec
Q 007616          158 ELPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLKK-----------LFPDIGNLVNLRHLKD  221 (596)
Q Consensus       158 ~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-----------lp~~i~~L~~L~~L~l  221 (596)
                      .+...+.....|+.|+|++|.|.     .+...+...++|+.|+++++ ....           +...+...++|+.|++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCC-cccccccccchHHHHHHHHHhhCCCcccccc
Confidence            45566778889999999999875     34456778899999999876 2221           2233556788999999


Q ss_pred             CCCCcccc-----ccccccCCcccCCCCcEEe
Q 007616          222 SHSNLLEE-----MPLRIGKLTSLRTLAKFVV  248 (596)
Q Consensus       222 ~~~~~l~~-----lp~~l~~l~~L~~L~~~~~  248 (596)
                      ++|. ++.     +...+...++|++|++.++
T Consensus       101 ~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         101 SDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             CSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             cccc-cccccccchhhhhcccccchheecccc
Confidence            9987 443     3344556778888876544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.3e-09  Score=106.56  Aligned_cols=89  Identities=15%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             CceeEEEEecccccccccccccccCcccccccCCCcEEeecCCCccc-----cccccc-cCCcCcEEEccccccccc---
Q 007616          135 RNLRHLSYLTSRFDGIKRFEGLHELPNDIAELKHLRYLDFSHTAIEV-----LSESVS-TLYNLQTLILEYCYRLKK---  205 (596)
Q Consensus       135 ~~~~~l~~~~~~~~~~~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~-~l~~L~~L~L~~~~~~~~---  205 (596)
                      ++++.+.+.++.+..    .++..++..+..+++|++|||++|.|+.     +...+. ...+|++|++++| .++.   
T Consensus        27 ~~l~~L~L~~~~i~~----~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~it~~~~  101 (460)
T d1z7xw1          27 QQCQVVRLDDCGLTE----ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC  101 (460)
T ss_dssp             TTCSEEEEESSCCCH----HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred             CCCCEEEeCCCCCCH----HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCC-Ccccccc
Confidence            345566666664331    1122456667889999999999999863     223332 2358999999999 5543   


Q ss_pred             --cCCcccCCCccceeecCCCCcccc
Q 007616          206 --LFPDIGNLVNLRHLKDSHSNLLEE  229 (596)
Q Consensus       206 --lp~~i~~L~~L~~L~l~~~~~l~~  229 (596)
                        ++..+..+++|++|++++|. +..
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~-i~~  126 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNL-LGD  126 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB-CHH
T ss_pred             ccccchhhcccccccccccccc-chh
Confidence              45567889999999999997 443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.02  E-value=1.5e-08  Score=98.38  Aligned_cols=247  Identities=15%  Similarity=0.071  Sum_probs=126.1

Q ss_pred             ccccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCCcccc-----------ccccccCCcccCC
Q 007616          179 IEVLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSNLLEE-----------MPLRIGKLTSLRT  242 (596)
Q Consensus       179 i~~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----------lp~~l~~l~~L~~  242 (596)
                      +..+...+.....|+.|+|++| .+.     .+-..+...++|+.|+++++. ...           +...+..+++|++
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~~l~~~~~L~~   97 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHT   97 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHhhCCCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCCCc-ccccccccchHHHHHHHHHhhCCCccc
Confidence            3456667888999999999998 442     344457788999999998775 222           2223445667777


Q ss_pred             CCcEEeccCCCCCchhccchhhccceEEEcCcCCCCCHhhHHHHhcCCccccccccccccCCcchh------------hh
Q 007616          243 LAKFVVGKGNCSGLKELRSLMHLQEKLTISGLENVNDAEDAKEAQLNGKKKLEALSPKWGNKIQTC------------VF  310 (596)
Q Consensus       243 L~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------~~  310 (596)
                      |++.++.... ..+                         ..+...+..+++|+.|+++.+......            ..
T Consensus        98 L~L~~n~i~~-~~~-------------------------~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~  151 (344)
T d2ca6a1          98 VRLSDNAFGP-TAQ-------------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN  151 (344)
T ss_dssp             EECCSCCCCT-TTH-------------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc-ccc-------------------------cchhhhhcccccchheecccccccccccccccccccccccc
Confidence            7665443321 111                         112222333444555555443321000            00


Q ss_pred             hccCCCCCccEEEEeccCCCC-----CCCCCCCCCCCCccEEEEecCCCCCC-----C-CCCCCCCccceeeccCccCce
Q 007616          311 EMLKPHYGLKELKVRGYGGTK-----FPAWLGQSSFENLVVLRFKNCNQCTT-----L-PSVGHLPSLKNLVIKGMAKVK  379 (596)
Q Consensus       311 ~~l~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~-----l-~~l~~l~~L~~L~L~~~~~l~  379 (596)
                      ......+.|+.+.++++....     +...+.  ..+.|+.|++++|.....     + ..+..+++|+.|++++|. ++
T Consensus       152 ~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~  228 (344)
T d2ca6a1         152 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ--SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FT  228 (344)
T ss_dssp             HHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH--HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CH
T ss_pred             cccccCcccceeecccccccccccccccchhh--hhhhhcccccccccccccccccchhhhhcchhhhccccccccc-cc
Confidence            011234566666666554321     111111  345677777777653211     1 134566777777777664 21


Q ss_pred             EeCccccCCCCCCCCCCcceeecccCccccccceeEEecCCCCCCCCC-CCCCCCCEEEEeeccC-------hhccC-CC
Q 007616          380 SVGLEFCGNYCSEPFPSLETLCFEDMQEWEERIGLSIVRCPKLKGRLP-QRFSSLERIVITSCEQ-------LLVSY-TA  450 (596)
Q Consensus       380 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~l~~c~~L~~~~p-~~l~~L~~L~l~~c~~-------l~~~~-~~  450 (596)
                      ..+..... .....+++|++|+++++. +.+..      +..+...+. ...+.|++|++++|.-       +...+ .+
T Consensus       229 ~~g~~~L~-~~l~~~~~L~~L~Ls~n~-i~~~g------~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~  300 (344)
T d2ca6a1         229 HLGSSALA-IALKSWPNLRELGLNDCL-LSARG------AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK  300 (344)
T ss_dssp             HHHHHHHH-HHGGGCTTCCEEECTTCC-CCHHH------HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHH
T ss_pred             cccccccc-ccccccccchhhhhhcCc-cCchh------hHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHcc
Confidence            11000000 011226777777777653 11100      000000111 1246788999988762       12223 25


Q ss_pred             CCCcceEEecCCcc
Q 007616          451 LPPLCELEIDGFSE  464 (596)
Q Consensus       451 l~~L~~L~l~~c~~  464 (596)
                      .++|+.|++++|..
T Consensus       301 ~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         301 MPDLLFLELNGNRF  314 (344)
T ss_dssp             CTTCCEEECTTSBS
T ss_pred             CCCCCEEECCCCcC
Confidence            78899999999873

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3.7e-06  Score=70.96  Aligned_cols=84  Identities=19%  Similarity=0.045  Sum_probs=62.9

Q ss_pred             cccccCCCcEEeecCCCccccc---cccccCCcCcEEEccccccccccCCc-ccCCCccceeecCCCCccccccc-----
Q 007616          162 DIAELKHLRYLDFSHTAIEVLS---ESVSTLYNLQTLILEYCYRLKKLFPD-IGNLVNLRHLKDSHSNLLEEMPL-----  232 (596)
Q Consensus       162 ~~~~l~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-----  232 (596)
                      ....+++|++|++++|+|+.++   ..+..+++|++|++++| .++.+++. ..+..+|+.|++++|. +.....     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~y  137 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQSTY  137 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCCC-cCcCcccchhH
Confidence            3457899999999999998653   45678999999999999 78877652 2344579999999998 443221     


Q ss_pred             ---cccCCcccCCCCcEE
Q 007616          233 ---RIGKLTSLRTLAKFV  247 (596)
Q Consensus       233 ---~l~~l~~L~~L~~~~  247 (596)
                         -+..+++|+.||...
T Consensus       138 ~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         138 ISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             HHHHHTTSTTCCEETTEE
T ss_pred             HHHHHHHCCCCCEECcCC
Confidence               155688888888544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=2.5e-05  Score=65.70  Aligned_cols=83  Identities=19%  Similarity=-0.015  Sum_probs=55.7

Q ss_pred             cccCCCcEEeecCCCccccccccccCCcCcEEEccccccccccC---CcccCCCccceeecCCCCcccccccc-ccCCcc
Q 007616          164 AELKHLRYLDFSHTAIEVLSESVSTLYNLQTLILEYCYRLKKLF---PDIGNLVNLRHLKDSHSNLLEEMPLR-IGKLTS  239 (596)
Q Consensus       164 ~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp---~~i~~L~~L~~L~l~~~~~l~~lp~~-l~~l~~  239 (596)
                      ..+..+..++..++....++.....+++|++|+|++| .++.++   ..+..+++|+.|++++|. +..+++- ..+..+
T Consensus        39 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~  116 (162)
T d1koha1          39 VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLK  116 (162)
T ss_dssp             TTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCC
T ss_pred             hhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccc
Confidence            3344445555555544455555567899999999999 676653   346788999999999998 8877652 223446


Q ss_pred             cCCCCcEEe
Q 007616          240 LRTLAKFVV  248 (596)
Q Consensus       240 L~~L~~~~~  248 (596)
                      |+.|++.++
T Consensus       117 L~~L~L~~N  125 (162)
T d1koha1         117 LEELWLDGN  125 (162)
T ss_dssp             CSSCCCTTS
T ss_pred             cceeecCCC
Confidence            777776444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.06  E-value=0.0035  Score=52.16  Aligned_cols=61  Identities=13%  Similarity=0.076  Sum_probs=40.6

Q ss_pred             cccCCCcEEeecC-CCcc-----ccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCC
Q 007616          164 AELKHLRYLDFSH-TAIE-----VLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSN  225 (596)
Q Consensus       164 ~~l~~L~~L~L~~-~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~  225 (596)
                      .+.+.|+.|++++ +.++     .+-..+...++|++|++++| .++     .+-..+...++++.+++++|.
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            4567888888887 3565     23445567788888888888 432     222335566788888888776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.43  E-value=0.0063  Score=50.58  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             ccCCCcEEeecCC-Ccc-----ccccccccCCcCcEEEcccccccc-----ccCCcccCCCccceeecCCCCcccc----
Q 007616          165 ELKHLRYLDFSHT-AIE-----VLSESVSTLYNLQTLILEYCYRLK-----KLFPDIGNLVNLRHLKDSHSNLLEE----  229 (596)
Q Consensus       165 ~l~~L~~L~L~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~----  229 (596)
                      +.++|+.|+|+++ .++     .+-..+...++|++|++++| .++     .+...+...+.|++|++++|. ++.    
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence            3467777777764 454     13334556677777777777 332     122224455677777777776 433    


Q ss_pred             -ccccccCCcccCCCCcE
Q 007616          230 -MPLRIGKLTSLRTLAKF  246 (596)
Q Consensus       230 -lp~~l~~l~~L~~L~~~  246 (596)
                       +-..+...++|++|++.
T Consensus        91 ~l~~aL~~n~sL~~L~l~  108 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKAD  108 (167)
T ss_dssp             HHHHHTTTTCCCSEEECC
T ss_pred             HHHHHHHhCCcCCEEECC
Confidence             22334455556666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.86  E-value=0.0085  Score=49.74  Aligned_cols=66  Identities=23%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccccc-----cCCcccCCCccceeecCCCC
Q 007616          159 LPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRLKK-----LFPDIGNLVNLRHLKDSHSN  225 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~-----lp~~i~~L~~L~~L~l~~~~  225 (596)
                      +-..+...++|++|+|++|.+.     .+...+...+.|++|++++| .++.     +-..+...+.|++|++++|.
T Consensus        36 l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          36 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3445667789999999999887     23445667899999999999 4542     33346777899999999885

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.24  E-value=0.031  Score=46.02  Aligned_cols=86  Identities=15%  Similarity=0.138  Sum_probs=59.2

Q ss_pred             CcccccccCCCcEEeecCCCcc-----ccccccccCCcCcEEEccccccc----cccCCcccCCCccceeecCC--CCcc
Q 007616          159 LPNDIAELKHLRYLDFSHTAIE-----VLSESVSTLYNLQTLILEYCYRL----KKLFPDIGNLVNLRHLKDSH--SNLL  227 (596)
Q Consensus       159 lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~----~~lp~~i~~L~~L~~L~l~~--~~~l  227 (596)
                      +-..+...++|+.|++++|.++     .+-..+...+.++.+++++|...    ..+...+...++|+.++++.  |. +
T Consensus        38 l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~-i  116 (166)
T d1io0a_          38 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-L  116 (166)
T ss_dssp             HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-C
T ss_pred             HHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCc-C
Confidence            4455667899999999999886     24456677899999999998322    23335567788898866654  44 3


Q ss_pred             cc-----ccccccCCcccCCCCc
Q 007616          228 EE-----MPLRIGKLTSLRTLAK  245 (596)
Q Consensus       228 ~~-----lp~~l~~l~~L~~L~~  245 (596)
                      +.     +...+.+.++|++|++
T Consensus       117 ~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_         117 GNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             cHHHHHHHHHHHHhCCCcCEEeC
Confidence            32     4444556677777764