Citrus Sinensis ID: 007659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
ccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccHHHccHHHHHHHHHHHccEEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccc
cccccccccccccccccccccccHHHHHHHccccccHHHcccccccccccccccccccccccccccHccccccHHcccccccHHcccccccccccHHccccccEEEEEEEccccHHHHHHHccccHHHHHHHHcccEEEEccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEcccccccccccEEEEEccccccccccccccccccccccccccccEHHHHHHccccEEEEEEcccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHcccccHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEccccccccccccccccccccHHHHHHHccccccc
mtedshhtfssddsaistdgssqtrqrkkrkwdqpaeslinfplasfgislpgvpvapvvpapaaaafftnppvasgatvppvvlqgplppkfnqpkvqDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVitrgkyrlpnappdgekplylHISAGAHLKETAERILAVDHAAAMVEEMLKqghagfptlqtvmgngvqaMSTSVFLGFDADASLNIaarirgpnlsltspynwerlfFCWCFRLYMQDQYINHIMNETGATVLLrgrgsgnseglqgeevhqplhlflssnnpkSLEEAKRLAENLLDTISaecgasrvssckvynavpppqqlltgiqgfgneqklnagsAVILTSTVnlssvplapsvpgvttVYSQGmmlqsggilnsvqpqqnivgypqpvstggtsysgyegiypqatPLQQVALALRqssspltslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqgseipnrselsanldvrnvsnmpppsklvqpvdngmphppprnmppppppkftllaptaklhdknnslnktksdnipvvSDTLVKLMEYGEDDDD
mtedshhtfssddsaistdgssqtrqrkkrkwdqpAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAReivindsessvrykltkrhtqeeiqkctgavvitrgKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIrgpnlsltspynWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTslvaptasvsstattsttstamsekekrppqkrkfqelpvgskgpakhnqgseipnrSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKnnslnktksdnipvvsdTLVKLMEYGEDDDD
MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLpgvpvapvvpapaaaafftnppvaSGATvppvvlqgplppKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVstggtsysgyEGIYPQATPLQQVALALRQSSSPLtslvaptasvsstattsttstamsEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMphppprnmppppppKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
*************************************SLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLP*KFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPN******KPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLR***************************************NLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVAL***********************************************************************************************************************************************************
******************************************************************************************************IIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITR****************YLHISAGAHLKETAERILAVDHAAAMVE*************************************************SLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGR***************PLHLFLSSNNPKSLEEAKRLAENLLDTISAECGA*****************************************************************************************STGGTSYSGYEGIYP*******************************************************************************************************************************************************TLVK***Y******
**********************************PAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQS***************************************FQELP**************IPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
*******************************WDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVAS****************FNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQG*************GVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQ****************************************************************************************************PPPP***************************IPVVSDTLVKL*EYG*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGVPVAPVVPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVEEMLKQGHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMPHPPPRNMPPPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYGEDDDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query594 2.2.26 [Sep-21-2011]
Q9LIA4578 Protein RIK OS=Arabidopsi yes no 0.877 0.901 0.488 1e-135
Q32SG5616 Protein RIK OS=Zea mays P N/A no 0.829 0.800 0.472 1e-111
Q2NLB0585 UPF0469 protein KIAA0907 N/A no 0.326 0.331 0.302 4e-23
Q6NZ18570 UPF0469 protein KIAA0907 yes no 0.318 0.331 0.302 1e-22
A0JM64612 UPF0469 protein KIAA0907 yes no 0.326 0.316 0.298 2e-22
Q3TCX3612 UPF0469 protein KIAA0907 yes no 0.442 0.429 0.285 9e-22
Q5ZL54619 UPF0469 protein KIAA0907 yes no 0.326 0.313 0.294 9e-22
Q7Z7F0614 UPF0469 protein KIAA0907 yes no 0.326 0.315 0.294 1e-21
Q09911534 Uncharacterized protein C yes no 0.436 0.485 0.225 4e-08
>sp|Q9LIA4|RIK_ARATH Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2 Back     alignment and function desciption
 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 307/629 (48%), Positives = 386/629 (61%), Gaps = 108/629 (17%)

Query: 1   MTEDSHHTFSSDDSAISTDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV-PVAPV 59
           MTED+         + +T+ +S+TRQR+KRKWD+PAE L+     + G++ P + P+   
Sbjct: 1   MTEDNDEARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLV-----AAGVAFPQLLPLGNT 55

Query: 60  VPAPAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDELIIAREIVINDSESSVRY 119
           +  P+ +      P+    +VP  V      PK NQPK+QDE+IIAREIVIND+E+S+R+
Sbjct: 56  MNVPSMS------PLLQTLSVPLAV------PKVNQPKIQDEVIIAREIVINDAEASLRH 103

Query: 120 KLTKRHTQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHL--KETAERILAV 177
           +LTKR TQE+IQ+ TGAVVITRGKYR PNAPPDGEKPLYLHISA A L  KET ERILAV
Sbjct: 104 RLTKRSTQEDIQRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKETTERILAV 163

Query: 178 DHAAAMVEEMLKQ---GHAGFPTLQTVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNL 234
           D AAAM+EEM+KQ      G   LQTV     + +ST V+LGF+AD S N+AARIRGPN 
Sbjct: 164 DRAAAMIEEMMKQKSISQIGSVGLQTV-----KMLSTCVYLGFEADPSSNVAARIRGPN- 217

Query: 235 SLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLH 294
                                 DQYINHIMNETGATV+LRGRGSG+ E   G+E   PLH
Sbjct: 218 ----------------------DQYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLH 255

Query: 295 LFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQ 354
           L LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G  G   E 
Sbjct: 256 LLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQEN 315

Query: 355 KLNAGSAVILTSTVNLSSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYP 411
           + N  S   L +++ +++ P A S   V   T++Y Q  ++QS GI N         G  
Sbjct: 316 Q-NLISTYGLMTSIPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG--------GPS 366

Query: 412 QPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAM 471
           QPV+ GGTSYSGY GIYPQATPLQQVA  L+QS SP+ S V PT  +++T+ +  +  A 
Sbjct: 367 QPVA-GGTSYSGYAGIYPQATPLQQVAQVLKQSISPVISTVPPTM-LTATSLSIPSDNAS 424

Query: 472 SEKEKRPPQKRKFQELPVGSKGPAKHNQGSEIPNRSEL--SANLDVRNV----------- 518
           +E E+RPP+KRKFQELP   K P K  Q SE+    ++  SAN  VR+            
Sbjct: 425 NEMERRPPRKRKFQELPADCKVPEKDKQQSELAMTGDVTPSAN-RVRSPPSPRSVMPPPP 483

Query: 519 ---------SNMPPPSKLVQPVDNGMPHPPPRN--MPP-------PPPPKFTLLAPTAKL 560
                      M PPS         M  PPPR+  M P       PPPP+FTL    ++L
Sbjct: 484 PKTIAPPPSKTMSPPS------SKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTTQRSRL 537

Query: 561 HDKNNSLNKTKSDNIPVVSDTLVKLMEYG 589
            D + S+ K        V DTL+KLMEYG
Sbjct: 538 QDNHISVKKPNP-----VPDTLIKLMEYG 561

Arabidopsis thaliana (taxid: 3702)
>sp|Q32SG5|RIK_MAIZE Protein RIK OS=Zea mays PE=1 SV=1 Back     alignment and function description
>sp|Q2NLB0|K0907_XENLA UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1 Back     alignment and function description
>sp|Q6NZ18|K0907_DANRE UPF0469 protein KIAA0907 homolog OS=Danio rerio PE=2 SV=1 Back     alignment and function description
>sp|A0JM64|K0907_XENTR UPF0469 protein KIAA0907 homolog OS=Xenopus tropicalis PE=2 SV=1 Back     alignment and function description
>sp|Q3TCX3|K0907_MOUSE UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZL54|K0907_CHICK UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z7F0|K0907_HUMAN UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1 Back     alignment and function description
>sp|Q09911|YAJE_SCHPO Uncharacterized protein C30D11.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC30D11.14c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
296082200659 unnamed protein product [Vitis vinifera] 0.910 0.820 0.591 1e-166
356568732654 PREDICTED: protein RIK-like [Glycine max 0.929 0.844 0.541 1e-153
356523622640 PREDICTED: protein RIK-like [Glycine max 0.929 0.862 0.551 1e-150
359488525566 PREDICTED: protein RIK-like [Vitis vinif 0.747 0.784 0.617 1e-149
255573372586 conserved hypothetical protein [Ricinus 0.846 0.858 0.556 1e-148
224141071497 predicted protein [Populus trichocarpa] 0.776 0.927 0.596 1e-145
297815272592 hypothetical protein ARALYDRAFT_905257 [ 0.900 0.903 0.476 1e-133
42565288578 protein RIK [Arabidopsis thaliana] gi|15 0.877 0.901 0.488 1e-133
11994521405 unnamed protein product [Arabidopsis tha 0.629 0.923 0.574 1e-115
357113418661 PREDICTED: protein RIK-like [Brachypodiu 0.732 0.658 0.5 1e-111
>gi|296082200|emb|CBI21205.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 364/615 (59%), Positives = 413/615 (67%), Gaps = 74/615 (12%)

Query: 17  STDGSSQTRQRKKRKWDQPAESLINFPLASFGISLPGV----PVAPVVPAPAAAAFFTNP 72
           S+D +S  RQRKKRKWDQPAESL+     S G++LPGV     V P+V  P A     + 
Sbjct: 57  SSDEASAIRQRKKRKWDQPAESLV-----SAGVALPGVLPLGNVGPLVGIPLAGVAPPSS 111

Query: 73  PVASGATVPPVVLQGPLPP-------KFNQPKVQDELIIAREIVINDSESSVRYKLTKRH 125
            + +  T+PPV     +         K NQPK+QDELI AREI+IND+ES+VRYKLTKR 
Sbjct: 112 ALLTNVTIPPVFQTSSIQQHASAIVQKLNQPKIQDELI-AREIIINDAESTVRYKLTKRQ 170

Query: 126 TQEEIQKCTGAVVITRGKYRLPNAPPDGEKPLYLHISAGAHLKETAERILAVDHAAAMVE 185
            QEEIQKCTGAVVITRGKYR PNA PDGEKPLYLHISAGAHLK+TAERI AVD AAAMVE
Sbjct: 171 MQEEIQKCTGAVVITRGKYRPPNALPDGEKPLYLHISAGAHLKDTAERIKAVDRAAAMVE 230

Query: 186 EMLKQGH--AGFPTLQTVMGN-GV-QAMSTSVFLGFDADASLNIAARIRGPNLSLTSPYN 241
           EMLKQG      P+   + GN GV QA ST VFLGF+AD SLNIAA IRGPN        
Sbjct: 231 EMLKQGQNSESVPSNSHLAGNTGVTQAPSTCVFLGFEADPSLNIAACIRGPN-------- 282

Query: 242 WERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNN 301
                          DQYINHIMNETGATV LRGRGSGNSE   GE   QPLHLFLSSNN
Sbjct: 283 ---------------DQYINHIMNETGATVSLRGRGSGNSESPNGEG-QQPLHLFLSSNN 326

Query: 302 PKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGS- 360
            K LE+AK LAENLLDTI AECGASR SSCKVY AVPPPQQLL G+Q  GNE  +   S 
Sbjct: 327 LKGLEDAKLLAENLLDTICAECGASRASSCKVYGAVPPPQQLLVGVQSSGNELNVKTSST 386

Query: 361 AVILTSTVNLSSVPLAP--SVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGG 418
           A + +S V+ +  PL    +VPGV+T +SQG + Q GG  NS QPQ N+V YP P  T G
Sbjct: 387 ACLASSAVSSTPTPLVSPLTVPGVSTGFSQGAVSQCGGFFNSGQPQSNLVCYPPPSLTAG 446

Query: 419 TSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVAPTASVSSTATTSTTSTAMSEKEKRP 478
           TSYSGY GIYPQATPLQQVALALRQS SP+TS +AP+ S +ST   S+ ++  SEKEKR 
Sbjct: 447 TSYSGYGGIYPQATPLQQVALALRQSPSPVTSTIAPSTSSASTVPMSSAAS-FSEKEKRL 505

Query: 479 PQKRKFQELPVGSKGPAKHNQGSEIPNRSELSANLDVRNVSNMPPPSKLVQPVDNGMP-- 536
           PQ+RKFQELPV  KGP K  QG ++P  SE ++ L VRN S MP P KLVQP  +GMP  
Sbjct: 506 PQRRKFQELPVALKGPTKPQQGLQLP--SETTSGLTVRNSSTMPAPRKLVQPSSSGMPPP 563

Query: 537 ----------------HPPPRNMP-PPPPPKFTLLAPTAKLHDKNNSLNKTKSDNIPVVS 579
                             P R M  PPPPPKF       ++ DK N LNK+KSD +P   
Sbjct: 564 PPKGTMGPLPPPPPKFSSPARTMAPPPPPPKFNSSTTIPEVDDK-NVLNKSKSDTVP--- 619

Query: 580 DTLVKLMEYGEDDDD 594
           DTL KLMEYGE+DDD
Sbjct: 620 DTLSKLMEYGEEDDD 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356568732|ref|XP_003552564.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|356523622|ref|XP_003530436.1| PREDICTED: protein RIK-like [Glycine max] Back     alignment and taxonomy information
>gi|359488525|ref|XP_003633772.1| PREDICTED: protein RIK-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255573372|ref|XP_002527612.1| conserved hypothetical protein [Ricinus communis] gi|223532986|gb|EEF34751.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224141071|ref|XP_002323898.1| predicted protein [Populus trichocarpa] gi|222866900|gb|EEF04031.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297815272|ref|XP_002875519.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] gi|297321357|gb|EFH51778.1| hypothetical protein ARALYDRAFT_905257 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42565288|ref|NP_566850.3| protein RIK [Arabidopsis thaliana] gi|156633616|sp|Q9LIA4.2|RIK_ARATH RecName: Full=Protein RIK; AltName: Full=Rough sheath 2-interacting KH domain protein; Short=RS2-interacting KH domain protein gi|62997489|gb|AAY24687.1| KH-domain protein [Arabidopsis thaliana] gi|332644059|gb|AEE77580.1| protein RIK [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|11994521|dbj|BAB02585.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357113418|ref|XP_003558500.1| PREDICTED: protein RIK-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
TAIR|locus:2093792578 RIK "RS2-interacting KH protei 0.542 0.557 0.427 1.7e-115
UNIPROTKB|Q32SG5616 Q32SG5 "Protein RIK" [Zea mays 0.237 0.228 0.668 8e-100
MGI|MGI:1921450612 2810403A07Rik "RIKEN cDNA 2810 0.383 0.372 0.322 1.2e-18
POMBASE|SPAC30D11.14c534 SPAC30D11.14c "RNA-binding pro 0.213 0.237 0.275 1.3e-09
ASPGD|ASPL0000075827466 AN4431 [Emericella nidulans (t 0.102 0.130 0.344 2.5e-09
TAIR|locus:2093792 RIK "RS2-interacting KH protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 588 (212.0 bits), Expect = 1.7e-115, Sum P(3) = 1.7e-115
 Identities = 156/365 (42%), Positives = 195/365 (53%)

Query:   257 DQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLL 316
             DQYINHIMNETGATV+LRGRGSG+ E   G+E   PLHL LS +NPKS+++AKRLAENL+
Sbjct:   218 DQYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLM 277

Query:   317 DTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAVILTSTVNLSSVPLA 376
             DTIS E GASRVSS KVY AVPPPQQL++G  G   E + N  S   L +++ +++ P A
Sbjct:   278 DTISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQ-NLISTYGLMTSIPITAPPYA 336

Query:   377 PS---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVXXXXXXXXXXEGIYPQATP 433
              S   V   T++Y Q  ++QS GI N         G  QPV           GIYPQATP
Sbjct:   337 VSSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVAGGTSYSGYA-GIYPQATP 387

Query:   434 LQQVALALRQSSSPLXXXXXXXXXXXXXXXXXXXXXXXXEKEKRPPQKRKFQELPVGSKG 493
             LQQVA  L+QS SP+                        E E+RPP+KRKFQELP   K 
Sbjct:   388 LQQVAQVLKQSISPVISTVPPTMLTATSLSIPSDNASN-EMERRPPRKRKFQELPADCKV 446

Query:   494 PAKHNQGSEIPNRSEL--SANL-----DVRNVSNMPPPSKLVQPVDNGMXXXXXXX---- 542
             P K  Q SE+    ++  SAN        R+V   PPP  +  P    M           
Sbjct:   447 PEKDKQQSELAMTGDVTPSANRVRSPPSPRSVMPPPPPKTIAPPPSKTMSPPSSKSMLPP 506

Query:   543 -----XXXXXXXK--------FTLLAPTAKLHDKNNSLNKTKSDNIPVVSDTLVKLMEYG 589
                         K        FTL    ++L D  N ++  K + +P   DTL+KLMEYG
Sbjct:   507 PPRSKTMSPLSSKSMLPPPPRFTLTTQRSRLQD--NHISVKKPNPVP---DTLIKLMEYG 561

Query:   590 EDDDD 594
             +D+DD
Sbjct:   562 DDEDD 566
GO:0005634 "nucleus" evidence=ISM;TAS
GO:0008150 "biological_process" evidence=ND
GO:0003723 "RNA binding" evidence=TAS
UNIPROTKB|Q32SG5 Q32SG5 "Protein RIK" [Zea mays (taxid:4577)] Back     alignment and assigned GO terms
MGI|MGI:1921450 2810403A07Rik "RIKEN cDNA 2810403A07 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
POMBASE|SPAC30D11.14c SPAC30D11.14c "RNA-binding protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075827 AN4431 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LIA4RIK_ARATHNo assigned EC number0.48800.87710.9013yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00170489
hypothetical protein (497 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
cd02395120 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho 0.003
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information 
 Score = 37.6 bits (88), Expect = 0.003
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 18/81 (22%)

Query: 125 HTQEEIQKCTGAVVITRGKY-----------RLPNAPPDGEKPLYLHISAGAHLKETAER 173
           +T ++++K TGA +  RGK            R P       +PL++ I+A    +E    
Sbjct: 26  NTLKQLEKETGAKISIRGKGSMKDGKKEEELRGPKYAHL-NEPLHVLITAETPPEE---- 80

Query: 174 ILAVDHAAAMVEEMLKQGHAG 194
             A+  A   +EE+LK    G
Sbjct: 81  --ALAKAVEAIEELLKPAIEG 99

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 594
KOG1960531 consensus Predicted RNA-binding protein, contains 100.0
KOG0119554 consensus Splicing factor 1/branch point binding p 99.93
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 99.87
COG5176269 MSL5 Splicing factor (branch point binding protein 99.76
KOG1588259 consensus RNA-binding protein Sam68 and related KH 99.74
KOG1960531 consensus Predicted RNA-binding protein, contains 99.29
KOG0334997 consensus RNA helicase [RNA processing and modific 99.04
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.93
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.45
KOG1676600 consensus K-homology type RNA binding proteins [RN 98.43
PRK13763180 putative RNA-processing protein; Provisional 98.41
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 97.97
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 97.89
smart0032269 KH K homology RNA-binding domain. 97.83
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 97.72
KOG0119554 consensus Splicing factor 1/branch point binding p 97.38
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 97.36
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 97.25
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 97.22
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 96.98
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 96.87
PF1301443 KH_3: KH domain 96.77
PRK13763180 putative RNA-processing protein; Provisional 96.0
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 95.98
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 95.76
COG1094194 Predicted RNA-binding protein (contains KH domains 95.21
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 95.19
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 94.85
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 94.26
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 94.08
KOG1588259 consensus RNA-binding protein Sam68 and related KH 92.57
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 91.34
PRK00106535 hypothetical protein; Provisional 90.6
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 90.59
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 89.54
PRK12704520 phosphodiesterase; Provisional 89.39
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 87.76
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 86.61
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 84.11
KOG2874356 consensus rRNA processing protein [Translation, ri 83.34
KOG1924 1102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 82.2
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 82.12
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 81.2
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 80.58
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-38  Score=325.49  Aligned_cols=371  Identities=18%  Similarity=0.140  Sum_probs=252.2

Q ss_pred             HhhhccCcchhhhccCCCccC--CCCCCCCC-CCCCCC--cccccccccCccccCCcCCCCcccCCCCCCCCCCCCCCCc
Q 007659           27 RKKRKWDQPAESLINFPLASF--GISLPGVP-VAPVVP--APAAAAFFTNPPVASGATVPPVVLQGPLPPKFNQPKVQDE  101 (594)
Q Consensus        27 r~krkwd~~a~~~~~~p~~~~--g~~~~g~~-~~~~~~--a~~~~a~~~~~q~~~~~~~pp~~~~~~~~~~~~~~K~~de  101 (594)
                      -++|+||++++.=-.+++...  |.-.|+.. +.+...  ++++-++.+|.-+-+--..-+..- ...+-+...++.+|+
T Consensus        13 ~~~~~WD~~~~~d~~~~~~~~~s~~~~p~eS~~~~~~~h~~~~s~s~~~N~~~~~k~~~~~~~N-a~~~i~~p~N~~K~~   91 (531)
T KOG1960|consen   13 NYSRDWDSRFTEDSYSRRDSQRSGNEAPRESRYYRKEEHLQERSRSRSPNRDSRWKSSSSGFAN-AHPPIEEPTNNGKEA   91 (531)
T ss_pred             CccccccCCCCCccccCchhhhccCCCCCcccccCcchhhhhhhhccCcchhcccccccccccc-ccchhhcccccchhH
Confidence            468999999986555443222  33444433 222222  455555777765433111111100 111112225666777


Q ss_pred             eeEEeeEEeCCCCccccccccchhHHHHHHhhhCCeEeecccccCCCCC--CCCCCCeEEeeecccchhhHHHHHHHHHH
Q 007659          102 LIIAREIVINDSESSVRYKLTKRHTQEEIQKCTGAVVITRGKYRLPNAP--PDGEKPLYLHISAGAHLKETAERILAVDH  179 (594)
Q Consensus       102 ~~f~aEIEINDlPq~vRy~LTKg~Tq~eIqe~TGAsVtTRGrYyPPgk~--~~gEpPLYL~IeG~Te~ket~eR~kaVDr  179 (594)
                      +. .++.+|||.+++|||.+|||.++++|.+++|+.|.+||+|++++..  .++++||||||.+.|.        +++++
T Consensus        92 ~~-~a~~~iN~~~~~~~~~~TRg~~~d~Ie~~~G~~~~~RGs~~~~El~~vg~~~~pLv~hI~~~T~--------Ei~~~  162 (531)
T KOG1960|consen   92 AA-AAARRINESLQSTKATSTRGTSYDHIEGITGTTSASRGSAPAPELPPVGSSEGPLVDHIPPSTA--------EITSK  162 (531)
T ss_pred             HH-HHHHHhhcccccccceeccchhHHhhhhhccceeeccCCCCCccCCCCCCCCCcceeecCCccH--------HHHHH
Confidence            74 8899999999999999999999999999999999999999999864  5789999999999985        68999


Q ss_pred             HHHHHHHHHHcCCC----------CCC--Ccc-------cccCCCCCcceeEEEecCCCCCCCceeeeEeCCCCCCCCcc
Q 007659          180 AAAMVEEMLKQGHA----------GFP--TLQ-------TVMGNGVQAMSTSVFLGFDADASLNIAARIRGPNLSLTSPY  240 (594)
Q Consensus       180 AIalIeEIIKe~P~----------~~p--t~~-------~~~~~G~~~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~  240 (594)
                      |+++|+-..+++..          ..+  -.+       ...-+|+++.+ |+||+++ +|.||+.+..-|++       
T Consensus       163 Ai~RIkgv~~~~~~~~n~~~V~i~~~~sP~~~i~~~V~~~~f~~G~~Y~~-k~~v~~~-~P~~~~K~~~~~r~-------  233 (531)
T KOG1960|consen  163 AIERIKGVFMQDVEINNVRNVYILVRASPLSEIENKVGVQLFSKGRYYPN-KALATDK-DPPLYLKIVSHNRK-------  233 (531)
T ss_pred             HHhhCccceeecccccccceEEEeecCCchhhhccccccccccccccchh-heecccC-CcchhhhhhccCcc-------
Confidence            99999966555421          011  111       11356777888 9999987 89999999999999       


Q ss_pred             ccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q 007659          241 NWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTIS  320 (594)
Q Consensus       241 ~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~  320 (594)
                                      +.||.||+.|++++++|||||||+.|++.|+|++|||||+|+|.+.+++.+||++|+||+++|+
T Consensus       234 ----------------d~~La~~~ie~~i~~l~~Gr~SG~iEP~~G~EsnEPMYI~i~h~~~~g~~~A~r~~~nl~~~v~  297 (531)
T KOG1960|consen  234 ----------------DLTLALQEIESWINPLIDGRRSGRREPNEGNESNEPMYIFSTHGNGNGENGAPRRKWNLEEKVY  297 (531)
T ss_pred             ----------------chhhhhhhhhhhhhhhhccccccccCcccccccCCceeEEeecCCchhhccchhHHHhHHHHHH
Confidence                            9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccccc-----ccccccc-cCCCcccccccccccc---ccccCCCcccceeccccccCCCCCCCCCCccceeeeccee
Q 007659          321 AECGASRV-----SSCKVYN-AVPPPQQLLTGIQGFG---NEQKLNAGSAVILTSTVNLSSVPLAPSVPGVTTVYSQGMM  391 (594)
Q Consensus       321 eEy~~~r~-----s~~k~y~-~~pppqq~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (594)
                      .+|.+|--     .....|- ..-|+|..+-++..++   ++...|--+                -...++-.+......
T Consensus       298 ~~~sr~~~~~~~~~p~~~y~~~~~~~~~~~~~~~g~~s~~i~p~~~~~~----------------~~p~~~~~~~~~~~~  361 (531)
T KOG1960|consen  298 INLSRGFHRQAIVGPQGAYVKHIQQETRTRVQIKGQGSAFIEPSTNRES----------------DEPIHLCIMSHDPNA  361 (531)
T ss_pred             HHhhhhhhhcccccCCcccccccCCCCCcceeccCccceeecCCCCCCC----------------CCCcccccccCChhh
Confidence            99976521     1111121 1224555555555554   332222111                011122222222222


Q ss_pred             ecccc--ccccCC--CCCCccCCCCCCCCCCcccccCCCCCcCCChHHHHHHHHhcCCCCCccccc
Q 007659          392 LQSGG--ILNSVQ--PQQNIVGYPQPVSTGGTSYSGYEGIYPQATPLQQVALALRQSSSPLTSLVA  453 (594)
Q Consensus       392 ~q~~~--~~~~~~--~~~~~~~~~~p~~~~g~~y~gy~~iypqatplqqva~~l~~~~~~~~~~v~  453 (594)
                      +|.--  .-.+++  +++-.+--.||  .+-+.-+|-||-+|-+-|   |+.+|+-+.-+-|+..+
T Consensus       362 ~~~~~~~~~~~i~~v~~qy~~~~~qp--~~~~~~~~~~~~~~p~~~---~~~~~~~~~q~~~qp~~  422 (531)
T KOG1960|consen  362 IQRAKVLCEDLIASVHQQYKAWKSQP--KDRDQNQGNRAYNPPNRN---QAFSARDSRQEKTQPTN  422 (531)
T ss_pred             hhhhhhcccccCCcccccCcccccCC--CcccccCCCCCCCCCCcc---ccccCCCCCCCCCCCCC
Confidence            22210  011111  45555666788  555667788999987776   67888877666665443

>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
2yqr_A119 Solution Structure Of The Kh Domain In Kiaa0907 Pro 2e-11
>pdb|2YQR|A Chain A, Solution Structure Of The Kh Domain In Kiaa0907 Protein Length = 119 Back     alignment and structure 
Iteration: 1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 259 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT 318
           Y+ HI  ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T
Sbjct: 40  YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQT 99
Query: 319 ISAECGASRVSSCKVYNAVPPP 340
           + AE   SR  + ++  AVP P
Sbjct: 100 VHAE--YSRFVN-QINTAVPLP 118

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 6e-22
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 5e-04
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 5e-10
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 3e-04
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
 Score = 90.4 bits (224), Expect = 6e-22
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 27/137 (19%)

Query: 205 GVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHI 263
           G+  +   +F+G + A  + N+  ++ GP                          Y+ HI
Sbjct: 8   GMHYVQDKLFVGLEHAVPTFNVKEKVEGPG-----------------------CSYLQHI 44

Query: 264 MNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAEC 323
             ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T+ AE 
Sbjct: 45  QIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE- 103

Query: 324 GASRVSSCKVYNAVPPP 340
                   ++  AVP P
Sbjct: 104 --YSRFVNQINTAVPLP 118
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.95
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 99.87
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 99.84
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.1
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.05
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.78
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.77
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.73
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.41
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.21
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.12
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.11
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.07
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.05
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 97.99
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 97.97
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.97
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 97.95
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 97.93
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 97.9
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 97.88
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 97.88
2dgr_A83 Ring finger and KH domain-containing protein 1; st 97.83
1we8_A104 Tudor and KH domain containing protein; structural 97.8
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 97.8
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 97.78
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 97.75
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 97.71
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 97.66
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 97.65
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.6
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 97.51
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.26
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 97.13
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.13
2cpq_A91 FragIle X mental retardation syndrome related prot 96.99
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 96.82
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 96.64
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 96.57
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 96.5
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 95.86
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 94.96
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 94.7
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 94.69
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 94.5
3n89_A376 Defective in GERM LINE development protein 3, ISO; 93.69
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 93.6
2dgr_A83 Ring finger and KH domain-containing protein 1; st 93.54
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 93.47
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 93.43
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 93.28
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 93.25
1we8_A104 Tudor and KH domain containing protein; structural 93.23
1x4m_A94 FAR upstream element binding protein 1; KH domain, 93.15
1x4n_A92 FAR upstream element binding protein 1; KH domain, 92.89
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 92.8
4fxw_B124 Splicing factor 1; UHM, protein binding, phosphory 92.69
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 92.65
3n89_A376 Defective in GERM LINE development protein 3, ISO; 92.04
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 91.92
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 91.08
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 89.85
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 89.79
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 89.54
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 89.52
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 88.75
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 88.56
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 80.36
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.95  E-value=1e-28  Score=220.48  Aligned_cols=112  Identities=36%  Similarity=0.646  Sum_probs=105.4

Q ss_pred             cCCCCCcceeEEEecCC-CCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCC
Q 007659          202 MGNGVQAMSTSVFLGFD-ADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGN  280 (594)
Q Consensus       202 ~~~G~~~~s~kV~Igid-~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~  280 (594)
                      ...|++|+++||||+++ .+|+|||+|+||||+                       |.+||+|++||||||.||||||++
T Consensus         5 ~~~~~~~~~~ki~ip~~~~~p~fn~ig~IIGpg-----------------------G~tiK~I~~eTG~kI~I~G~gS~~   61 (119)
T 2yqr_A            5 SSGGMHYVQDKLFVGLEHAVPTFNVKEKVEGPG-----------------------CSYLQHIQIETGAKVFLRGKGSGC   61 (119)
T ss_dssp             CCSCCSCEEEEEECCCTTSCTTTCHHHHHSCGG-----------------------GHHHHHHHHHHCCEEEEESBTTTC
T ss_pred             CCCCeeEEEEEEEcCCccCCCCCCeeeeEECCC-----------------------ChHHHHHHHHHCCEEEEecCCccc
Confidence            45678999999999999 699999999999999                       999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCc
Q 007659          281 SEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP  340 (594)
Q Consensus       281 ~E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~tV~eEy~~~r~s~~k~y~~~ppp  340 (594)
                      +|+.+++|++|||||+|++.+++.+++|++||++||.+++++|++|    |+-++.+.|-
T Consensus        62 ~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~~~~~~~----~~q~~~~~p~  117 (119)
T 2yqr_A           62 IEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAEYSRF----VNQINTAVPL  117 (119)
T ss_dssp             CCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSCCCCC
T ss_pred             cccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhchHHHHHHH----HHhhCCCCCC
Confidence            9999999999999999999999999999999999999999999999    6666666554
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 594
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 8e-11
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 4e-04
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 5e-10
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 0.001
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 8e-11
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 29/111 (26%)

Query: 213 VFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVL 272
           V +  D    +N    + GP                       +   + +I  E  A ++
Sbjct: 7   VMIPQDEYPEINFVGLLIGP-----------------------RGNTLKNIEKECNAKIM 43

Query: 273 LRGRGS------GNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLD 317
           +RG+GS      G  +G       +PLH  +++N  +++++A     N+L 
Sbjct: 44  IRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILK 94
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 99.91
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 99.9
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.33
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.1
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 98.09
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.09
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.02
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.01
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 97.99
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.99
d2cpqa178 Fragile X mental retardation syndrome related prot 97.96
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 97.96
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.85
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 97.82
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 97.79
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.76
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.74
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.72
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 97.66
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 97.52
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 97.47
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.44
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.44
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.28
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.19
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.07
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 96.0
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 95.95
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 95.24
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 95.06
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.68
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.66
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 94.37
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 94.14
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 93.84
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 93.5
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 93.0
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 92.71
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 92.58
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 91.87
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 91.42
d2cpqa178 Fragile X mental retardation syndrome related prot 90.46
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 83.58
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 82.02
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: RNA splicing factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-25  Score=199.54  Aligned_cols=88  Identities=24%  Similarity=0.434  Sum_probs=81.2

Q ss_pred             cceeEEEecCCCCCCCceeeeEeCCCCCCCCccccchhhhhhcccccccchhHHHHHhhcCcEEEEeecCCCC------C
Q 007659          208 AMSTSVFLGFDADASLNIAARIRGPNLSLTSPYNWERLFFCWCFRLYMQDQYINHIMNETGATVLLRGRGSGN------S  281 (594)
Q Consensus       208 ~~s~kV~Igid~~P~fN~~~rIIGP~~~~~~~~~~~ki~~~~~~~~~~qGs~lk~Iq~ETGaKV~LRGKGSG~------~  281 (594)
                      ..++|||||++.+|+|||+|+||||+                       |+++|+||+||||||+||||||+.      .
T Consensus         2 k~~~Ki~iP~~~~P~fNfvG~IlGPr-----------------------G~t~K~Le~eTgckI~IrGrGS~kd~~~~~~   58 (122)
T d1k1ga_           2 RVSDKVMIPQDEYPEINFVGLLIGPR-----------------------GNTLKNIEKECNAKIMIRGKGSVKEGKVGRK   58 (122)
T ss_dssp             CEEEEEECCTTTCCSHHHHHHHHCSS-----------------------SHHHHHHHHHSCCEEEEEESTTSSSSSSSSC
T ss_pred             ceeEEEecCCccCCCCCeeeeEeCCC-----------------------CchHHHHHHHHCCEEEEEecCCccccccccc
Confidence            56899999999999999999999999                       999999999999999999999953      3


Q ss_pred             CCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHHHH
Q 007659          282 EGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDT  318 (594)
Q Consensus       282 E~~~gqEs~EPLHl~IS~~~pe~l~~Ak~L~EnLL~t  318 (594)
                      +....++.+|||||||++++++.++.|+.+|++||..
T Consensus        59 ~~~~~~~~~epLHv~I~a~~~~~~~~A~~~i~~ll~~   95 (122)
T d1k1ga_          59 DGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ   95 (122)
T ss_dssp             CCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCceEEEecCChhhHHHHHHHHHHHHHh
Confidence            4455667899999999999999999999999999964
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure