Citrus Sinensis ID: 007664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
Protein Sequence
MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFMLT
Secondary Structure (PSIPRED)
cccccccccHHccccccccccccccccccHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHccccHHHcHHccHHHHHccccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHcHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccEEEEEcccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEHcHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdrrswlwrrksgggaaggetessgsvsslserfsddqthssqsseatskappldevvnDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRkaspntenksftpssiyvgsftdsqsdngerllgnetdnckisdsevnecepnsstswasalaiepdknvkavgrnvmvpsvdinlMDDFLEMERlaalpdtesrsfcvevgpasdqpnadeSSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAgsnqelkinqvsglsfmlt
Flexible Loop (DISEMBL)
mdrrswlwrrksgggaaggetessgsVSSLSERFSddqthssqsseatskappldeVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIqetvskqnleweskKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAvvrkaspntenksftpssiyvgsFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAiepdknvkavgrnVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPasdqpnadesSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEeevksakskkeaaesRLRAVEAEMETLrskvisledevekeralseenianfqkskdELSKVKQEIELQHEVKLQylagsnqelkinqvsglsfmlt
Low Complexity Region (SEG)
MDRRSWLWRRKsgggaaggetessgsvsslseRFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVrqlrqareeqeqriqeTVSKQNleweskkselesklVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAlklellslvkelelRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAeleeeleNMRAEKSELEMDLKESQRRLETSQNqlkeaelkleeletqlaFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANkskqaaeeevksakskkeaaesRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFMLT
Disordered region (IsUnstruct)
***********************************************************************ALLN************************************************************************************************************************************LKLELLSLVKELELRIVER*******************KLAKVEAECLRLKAVV**************************************************************LAI***KNVKAVGRNVMVPSVDINLMDDFLEMERLAAL*******FC******************************************************************************************************************************************************************************************************VKLQYLA*******************
Disordered Region (DISOPRED)
*DRRSWLW***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GLSFM**
Disordered Region (DISEMBL)
MDRRSWLWR********************************************LDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ************ENRVSHLDGALKECVRQL************************KKSELESKLVDLQKK**************DLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISD*************WASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEV**********ESSIKAELEVLIHRTAELEEELE*************************QLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQL*****************************AVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFMLT
Disordered Region (DISPRO)
****************************************************PLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP*******T*SSIYVG**TDSQSDNGERLLGNET*N***SDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALP***********************SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLCSKxxxxxxxxxxxxxxxxxxxxxLELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMKAAIAARGVAESKLSVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEVKLQYLAGSNQELKINQVSGLSFMLT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	594	2.2.26 [Sep-21-2011]
Q9MA92	615	Filament-like plant prote	yes	no	0.867	0.837	0.455	1e-109
Q8LLE5	582	Filament-like plant prote	N/A	no	0.749	0.764	0.457	1e-100
Q9CAP9	779	Filament-like plant prote	no	no	0.493	0.376	0.460	4e-67
Q9SFF4	629	Filament-like plant prote	no	no	0.707	0.667	0.361	1e-57
Q0WSY2	982	Filament-like plant prote	no	no	0.479	0.290	0.345	7e-41
O65649	996	Filament-like plant prote	no	no	0.436	0.260	0.381	4e-40
Q9C698	1054	Filament-like plant prote	no	no	0.351	0.198	0.405	5e-35
Q9SLN1	898	Filament-like plant prote	no	no	0.388	0.257	0.341	2e-24

>sp|Q9MA92|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 281/617 (45%), Positives = 368/617 (59%), Gaps = 102/617 (16%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVND 60
           MDRRSWLWRRKS   + G ETES+GSVSS SERFSDDQ   SQS E  SK    +E    
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESTGSVSSHSERFSDDQ--RSQSPELNSKPVTREEEATA 57

Query: 61  SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSA 120
            +K LTE+LSAALLNVS KEDL KQHAKVAEEAVSGWEKAENE + LKQQL A++ K SA
Sbjct: 58  DIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSA 117

Query: 121 LENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180
           LE+R SHLD ALKECVRQL Q REEQ Q+I+E ++ +  EWE+ KS+LE+++ +LQ +  
Sbjct: 118 LEDRNSHLDSALKECVRQLWQGREEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQD 177

Query: 181 TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
              S    S   DL  KLEA EK+NSALKL+LLS  +E+++R +ERDLST+AAE+ASKQ 
Sbjct: 178 VTTS----SVHEDLYPKLEALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQ 233

Query: 241 LESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETD 300
           LE IKKL K+EAEC +L+ +VR+    ++N S   SSI      D+QSD   R+      
Sbjct: 234 LEGIKKLTKLEAECRKLRVMVRR----SDNSSDLKSSI------DNQSDYSGRV------ 277

Query: 301 NCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAA 360
               SD+E+    P+                 K +G++ M  SVDI LMDDFLEME+LAA
Sbjct: 278 --SFSDNEMQ--SPSE----------------KIIGKSSMATSVDIGLMDDFLEMEKLAA 317

Query: 361 LPDTESRSFCVEVGPASDQPNADESSIKAEL----------------------------- 391
           LP +E      E     ++ NA  + +K EL                             
Sbjct: 318 LPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALN 377

Query: 392 ------EVLIHRTAELEEELENMR---AEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
                 E L  R  E+E +L  M+   AE  ELE+ L ES +++E  Q QL +A++ L E
Sbjct: 378 GSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSE 437

Query: 443 LETQLA-------FANKSKQAVEVEMKAAIAARGVAESKLSVVE---AEMKTQLALANKS 492
           LET+ A         N +K+ +E            ++++L   E    E++T L L   +
Sbjct: 438 LETRRAEKLELTMCLNGTKKQLE-----------TSQNRLKETERKLTELQTLLHLTKDA 486

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
           K+AAE+ +K+A  K EA ESRL+ VEAE E+L  K+ SLED  EKERALS ++ +   + 
Sbjct: 487 KEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNEL 546

Query: 553 KDELSKVKQEIELQHEV 569
           +DE+SK+KQE+E   E 
Sbjct: 547 QDEISKLKQELEHHQET 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LLE5|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 234/511 (45%), Positives = 317/511 (62%), Gaps = 66/511 (12%)

Query: 79  KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQ 138
           KEDLVKQHAKVAEEA++GWEKAENE++ LKQQL AA Q+N  LE RVSHLDGALKECVRQ
Sbjct: 1   KEDLVKQHAKVAEEAIAGWEKAENEVAVLKQQLDAAVQQNLTLEVRVSHLDGALKECVRQ 60

Query: 139 LRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKL 198
           LRQAR+EQE+ IQ+ ++++N E ES+K+ LE +L+ LQ +++  K+E   S D D+  +L
Sbjct: 61  LRQARDEQEKMIQDAMAEKN-EMESEKTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRL 119

Query: 199 EAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258
           +  EK+N+ALK+EL+S  + LE+R +ERDLST+AAETASKQ LESIKKL K+E EC +L+
Sbjct: 120 KYLEKENAALKIELVSCSEVLEIRTIERDLSTQAAETASKQQLESIKKLTKLEVECRKLQ 179

Query: 259 AVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSST 318
           A+ RK+SP  + +S   SS YV S TDSQSD+GERL   + D  K+S  E  E EP+ S 
Sbjct: 180 AMARKSSPFNDQRSSAVSSFYVDSVTDSQSDSGERLNTVDNDALKMSKLETREYEPSCSN 239

Query: 319 SWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCV--EVG 374
           SWASAL  E D  KN KA+ + +   S++I++MDDFLEME+LAAL +T +++  V  +  
Sbjct: 240 SWASALIAELDQFKNEKAMPKTLAACSIEIDMMDDFLEMEQLAALSETANKTPSVTSDAV 299

Query: 375 PASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLK 434
           P  D PN  E+ + AE   +  R  ELE++LE + AEK+ELE    ESQ  L+ S  QLK
Sbjct: 300 P-HDSPNI-ENPLAAEYNSISQRVVELEQKLEKIEAEKAELENAFNESQDALKVSSLQLK 357

Query: 435 EAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ 494
           E + +LE L+ +L   N+SK+ +E ++                                 
Sbjct: 358 ETQTRLEGLQKELDVVNESKELLEFQL--------------------------------- 384

Query: 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554
                                 +E E  T+   + SL+ EVEKE++LS E  A   + ++
Sbjct: 385 --------------------YGMEVEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELEN 424

Query: 555 ELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           +L K  QE E Q        +GSN ELKI Q
Sbjct: 425 DLRKKSQEAEAQQ------TSGSNSELKIKQ 449

Solanum lycopersicum (taxid: 4081)

>sp|Q9CAP9|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1

 Score =  256 bits (653), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 159/345 (46%), Positives = 221/345 (64%), Gaps = 52/345 (15%)

Query: 56  EVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAAS 115
           E + DS+KTL EKLSAAL NVSAK+DLVKQH KVAEEAV+GWEKAENE+  LK++L+AA 
Sbjct: 56  EELKDSMKTLAEKLSAALANVSAKDDLVKQHVKVAEEAVAGWEKAENEVVELKEKLEAAD 115

Query: 116 QKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDL 175
            KN  LE+RVSHLDGALKECVRQLRQAR+EQEQRIQ+ V ++  E +S ++ LE+++ + 
Sbjct: 116 DKNRVLEDRVSHLDGALKECVRQLRQARDEQEQRIQDAVIERTQELQSSRTSLENQIFE- 174

Query: 176 QKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAET 235
                       A+   +L    E+  K+N  L+ ELL+  +ELE+R +ERDLST+AAET
Sbjct: 175 -----------TATKSEELSQMAESVAKENVMLRHELLARCEELEIRTIERDLSTQAAET 223

Query: 236 ASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLL 295
           ASKQ L+SIKK+AK+EAEC + + + + ++   +++S           TDS SD GER+ 
Sbjct: 224 ASKQQLDSIKKVAKLEAECRKFRMLAKSSASFNDHRS-----------TDSHSDGGERM- 271

Query: 296 GNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEM 355
                            + + S SWAS+  IE  ++++         S++++LM DFLEM
Sbjct: 272 -----------------DVSCSDSWASSTLIEK-RSLQGTS-----SSIELDLMGDFLEM 308

Query: 356 ERLAALPDTESRSFCVEVGPAS---DQPNADESSIKAELEVLIHR 397
           ERL ALP+T   +   + GP S   +     E+S+ +E+EVL  R
Sbjct: 309 ERLVALPETPDGNG--KSGPESVTEEVVVPSENSLASEIEVLTSR 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFF4|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1

 Score =  224 bits (571), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 182/503 (36%), Positives = 272/503 (54%), Gaps = 83/503 (16%)

Query: 76  VSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC 135
           + +K++LVKQHAKVAE+AV+GWEKAENE+  LKQ+L+ A+ KN  LE+RVSHLDGALKEC
Sbjct: 13  MDSKDELVKQHAKVAEDAVAGWEKAENEVVELKQKLEDAADKNIVLEDRVSHLDGALKEC 72

Query: 136 VRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLC 195
           VRQLRQ R+EQE+ IQ  V++   E  S  + LE ++++LQK+ + AKSE          
Sbjct: 73  VRQLRQFRDEQEKNIQAAVTESTKELHSANTGLEKRVLELQKEAEAAKSE---------- 122

Query: 196 SKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECL 255
                    N  L+ E L+  ++LE+ ++ERDLST+AAETASKQHL+ IKKLAK+EAEC 
Sbjct: 123 ---------NMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAKLEAECR 173

Query: 256 RLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNG-ERLLGNETDNCKISDSEVNECEP 314
           +L+ + +           T SS+      DS SD G ER+ G+ +D              
Sbjct: 174 KLRILAK-----------TSSSLSSNQSVDSHSDGGRERVEGSCSD-------------- 208

Query: 315 NSSTSWASALAI-EPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALP------- 362
               SWAS+  I E D  KN K   R++     S +I+LMDDFLEMERL ALP       
Sbjct: 209 ----SWASSAFISELDQIKNEKGGNRSLQGTTSSTEIDLMDDFLEMERLVALPTETQAKN 264

Query: 363 --DTESRSFCVEVGPASDQPNADESSIKA----------ELEVLIHRTAELEEELENMRA 410
             D    S   ++     + +  E  +K           E+E ++    ELE+ L+ + A
Sbjct: 265 SKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEA 324

Query: 411 EKSELEMDLKESQRRLETSQNQLKEAELKLE-------ELETQLAFANKSKQAVEVEMKA 463
           EK+EL+      + + + S+   +E + KLE       EL++++    ++++   +E++A
Sbjct: 325 EKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEA 384

Query: 464 AIAARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAE 520
            +  +   E +L  +E   AE+K    +     Q +    +  + K EA +  L+     
Sbjct: 385 VVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMKRELKLANES 444

Query: 521 METLRSKVISLEDEVEKERALSE 543
                S+V  +E EV KER +S+
Sbjct: 445 KTQAESRVTRMEAEVRKERIVSD 467

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1

 Score =  169 bits (427), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 183/327 (55%), Gaps = 42/327 (12%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS--EATSKAPPLDEV- 57
           MDR+SW W++KS        +E + +V+ + ++ +  +    Q S  + T+     DEV 
Sbjct: 1   MDRKSWPWKKKS--------SEKTATVTEVVDQENGKKPSYIQISFDQYTNLNGLKDEVK 52

Query: 58  --------VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ 109
                   + D +K L  KLS A  ++ AKE LVKQH+KVAEEAV+GWEKAE E S LK 
Sbjct: 53  SYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKT 112

Query: 110 QLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELE 169
            L+  +     +E+R +HLDGALKEC+RQ+R  +EE EQ++ + ++ +  + ++ ++E E
Sbjct: 113 HLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTNQMDNLRAEFE 172

Query: 170 SKLVDLQKKLQTAKSE-----------------------AAASADRDLCSKLEAAEKQNS 206
           S++ + +++L    +E                        A S    L + +E+ E++ +
Sbjct: 173 SRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNIESCEREIN 232

Query: 207 ALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
            LK E   + KELE+R  E+++S ++AE A+KQHLE +KK+AK+EAEC RL+ +VRK  P
Sbjct: 233 TLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLRTLVRKKLP 292

Query: 267 NTENKSFTPSSIYVGSFTDSQSDNGER 293
                +     +    F D + D+ +R
Sbjct: 293 GPAALAQMKMEVESLGFGDHRQDHRQR 319

Arabidopsis thaliana (taxid: 3702)

>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 171/309 (55%), Gaps = 50/309 (16%)

Query: 1   MDRRSWLWRRKSGGGA------AGGETESSGSVSSLS--------------ERFSDDQTH 40
           M+ R W W+RKS   A       G E+    S+S L+              +   D  TH
Sbjct: 1   MEGRGWPWKRKSSDKATTEKPVVGIESTPVCSLSYLASLENQEKCKNTNYVQITMDSYTH 60

Query: 41  SSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKA 100
            S+  +       L EV    VK L EKL+ A   ++ KE L+ QHAKVAEEAVSGWEKA
Sbjct: 61  MSRMEDQVK----LFEV---QVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVSGWEKA 113

Query: 101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE 160
           + E   LK+QL++ +      E+R SHLD ALKEC RQ+R  +EE ++++Q+ +  +  +
Sbjct: 114 DAETLALKRQLESVTLLKLTAEDRASHLDDALKECTRQIRIVKEESDKKLQDVILAKTSQ 173

Query: 161 WESKKSELESKLVDLQKKLQTAKSEAAA--------------------SADRD---LCSK 197
           W+  K+ELE K+ +L + L  A S+ AA                     A+ D   L + 
Sbjct: 174 WDKIKAELEGKIDELSEGLHRAASDNAALTRSLQERSEMIVRISEERSKAEADVEKLKTN 233

Query: 198 LEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRL 257
           L+ AEK+ S LK +L    KE+E+R  E+++S K+A+ A+KQHLE +KK+AK+EAEC RL
Sbjct: 234 LQLAEKEISYLKYDLHVASKEVEIRNEEKNMSLKSADIANKQHLEGVKKIAKLEAECHRL 293

Query: 258 KAVVRKASP 266
           + ++RK  P
Sbjct: 294 RGLLRKKLP 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C698|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1

 Score =  149 bits (377), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 23/232 (9%)

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           +N+ V+ L EKLS A   +  KE LVKQH+KVAE+AVSGWEKA+ E   LK  L++ +  
Sbjct: 111 LNEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTLS 170

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQET-------VSKQNLEWESKKSELES 170
               E+R +HLDGALKEC+RQ+R  +++ E ++ +        + K  +E+E +  + E 
Sbjct: 171 KLTAEDRAAHLDGALKECMRQIRNLKKDHEVKLHDVALSKTKQIEKMTMEFEKRMCDYEQ 230

Query: 171 KLVD-------LQKKLQ------TAKSEAAASADRD---LCSKLEAAEKQNSALKLELLS 214
           +L+        L + LQ         SE  + AD +   L S LE  E++  +LK E+  
Sbjct: 231 ELLRSAADSDALSRTLQERSNMLVKVSEEKSRADAEIETLKSNLEMCEREIKSLKYEVHV 290

Query: 215 LVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           + KELE+R  E+++  ++AE+A+KQHLE +KK+AK+EAEC RL+++VRK  P
Sbjct: 291 VSKELEIRNEEKNMCIRSAESANKQHLEGVKKIAKLEAECQRLRSLVRKKLP 342

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 156/290 (53%), Gaps = 59/290 (20%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEV-VN 59
           MD ++W W++KS         ES+G V +                         D++ + 
Sbjct: 1   MDHKAWPWKKKSMEKTV---VESNGEVVA-------------------------DKIELE 32

Query: 60  DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNS 119
             VK+L +KL++    V A+ +   +H   A+EA+ GWEK + E+++LK++L  A  +  
Sbjct: 33  HRVKSLNDKLNS----VEAESN---KHETEAQEAIVGWEKTKAEVASLKKKLDEALNEKH 85

Query: 120 ALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKL 179
             E R SH D  LKECV+QLR  REEQE+R+ + ++K + E+E +   ++++L    K+L
Sbjct: 86  RSEERSSHTDAGLKECVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRL 145

Query: 180 QTAKSEAAA---------------SADRD--------LCSKLEAAEKQNSALKLELLSLV 216
             A+ E A                + +RD        L S LE+ EK+N +L+ E+  L 
Sbjct: 146 AEAEGENAQLSKALLAKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLE 205

Query: 217 KELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           KELELR  ER+ S + AE + K HLE++KK+AK+E+EC RL+ +VRK  P
Sbjct: 206 KELELRNEEREFSRRTAEASHKLHLENVKKVAKLESECQRLRVLVRKRLP 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
224096133	664	predicted protein [Populus trichocarpa]	0.905	0.810	0.571	1e-154
147866605	749	hypothetical protein VITISV_031800 [Viti	0.860	0.682	0.588	1e-151
359480767	633	PREDICTED: filament-like plant protein 3	0.841	0.789	0.568	1e-146
224083536	548	predicted protein [Populus trichocarpa]	0.855	0.927	0.540	1e-144
359480769	646	PREDICTED: filament-like plant protein 3	0.863	0.794	0.582	1e-143
356527538	671	PREDICTED: filament-like plant protein 3	0.902	0.798	0.509	1e-140
356512872	673	PREDICTED: filament-like plant protein 3	0.910	0.803	0.508	1e-139
357520147	640	Filament-like plant protein [Medicago tr	0.883	0.820	0.510	1e-133
224082296	624	predicted protein [Populus trichocarpa]	0.863	0.822	0.495	1e-130
356518810	649	PREDICTED: filament-like plant protein-l	0.900	0.824	0.515	1e-130

>gi|224096133|ref|XP_002310544.1| predicted protein [Populus trichocarpa] gi|222853447|gb|EEE90994.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 338/591 (57%), Positives = 416/591 (70%), Gaps = 53/591 (8%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQT---HSSQSSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ET+SSGS+SS SERFSDDQ    H+ QS E TSK+   DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETDSSGSISSRSERFSDDQVYTIHNPQSPEVTSKSVLTDED 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
            +D+V+TLTEKLSAALLN+SAKE+LVKQHAKVAEEAVSGWEKAEN+LS LKQQL+ A++K
Sbjct: 60  HSDNVRTLTEKLSAALLNISAKEELVKQHAKVAEEAVSGWEKAENDLSALKQQLEDATKK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLD ALKECVRQLRQ+REEQ++RI E V+K+  EWES KSELE++L     
Sbjct: 120 NSALEDRVGHLDAALKECVRQLRQSREEQDERINEVVTKKISEWESTKSELEAQL----- 174

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
             QTAK EA  SAD DL  + +A EK+N +LK ELLS  +E+E+RI+ERDLST+AAETAS
Sbjct: 175 --QTAKDEATTSADSDLWKRFDAVEKENMSLKRELLSRAEEIEIRILERDLSTQAAETAS 232

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           K HLESIKKLAK+EAEC +LKA+ RKAS   + KS T SSI   S TD QSD GERLL  
Sbjct: 233 KLHLESIKKLAKLEAECRKLKAMARKASAANDYKSLTASSIGDESITDRQSDIGERLLAV 292

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+ +CK+S  E+NEC+P+ S S A A A E D  KN K +GRN  V SV+INLMDDFLEM
Sbjct: 293 ESHSCKMSGLEMNECDPSCSDSRACAHATEFDQYKNWKPIGRNRTVHSVEINLMDDFLEM 352

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSEL 415
           ERLAA P T S    +E  P SD+ N   +  K ELE +I+RTAELEE+L+ M  EK++ 
Sbjct: 353 ERLAAFPYTLSGRSYLEAEPVSDKGNGSGNPWKEELESMINRTAELEEKLDKMEEEKNKS 412

Query: 416 EMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475
           EM L + QR+LET ++ L EA+ K+                                   
Sbjct: 413 EMALTKCQRQLETLRSHLHEADTKI----------------------------------- 437

Query: 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535
                E++ +LALAN+S QA EEE+K  ++K E  +S+LR  EAE++TL SKV+SL+ EV
Sbjct: 438 ----GELQAKLALANESSQAREEEMKDIEAKSEE-KSQLRIAEAEIKTLLSKVVSLDSEV 492

Query: 536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQV 586
           EKERALS EN    Q+ +DELSK+K E ELQHE + + +A  N+ELKI QV
Sbjct: 493 EKERALSTENAVKSQQLEDELSKMKCEAELQHENERRRVASFNEELKITQV 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866605|emb|CAN83687.1| hypothetical protein VITISV_031800 [Vitis vinifera]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 331/562 (58%), Positives = 408/562 (72%), Gaps = 51/562 (9%)

Query: 27  VSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQH 86
           +SSLS+ + +    +S S E TSKA P+DE VNDSVK+LTEKLSAALLN+SAKEDLVKQH
Sbjct: 9   LSSLSKVYPN---QNSPSPEVTSKAAPVDEEVNDSVKSLTEKLSAALLNISAKEDLVKQH 65

Query: 87  AKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQ 146
           AKVAEEAVSGWEKAENE+ +LKQQL+A  QKNS LE+RV HLDGALKEC+RQLRQAREEQ
Sbjct: 66  AKVAEEAVSGWEKAENEVFSLKQQLEAXXQKNSXLEDRVGHLDGALKECLRQLRQAREEQ 125

Query: 147 EQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNS 206
           EQ+I E V K+  EWES KSELES++V++Q +LQTAK+E  A+ D  L  KL AAEK+N+
Sbjct: 126 EQKIHEAVVKRTHEWESTKSELESQIVEIQAQLQTAKAEXVATVDPGLELKLGAAEKENA 185

Query: 207 ALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           ALKL+LLS  +ELE+R +E++LST+AAETASKQ+LESIKK+AK+EAEC RLKA+ RKAS 
Sbjct: 186 ALKLQLLSREEELEIRTIEQELSTQAAETASKQNLESIKKVAKLEAECRRLKAMARKASS 245

Query: 267 NTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAI 326
             ++KS T SS+ V S TDSQSD+GERLL  E D  K++  + NECEP+ S SWAS L  
Sbjct: 246 ANDHKSXTASSVCVESLTDSQSDSGERLLALEIDTRKMTGLDTNECEPSRSDSWASGLIQ 305

Query: 327 EPD--KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQP-NAD 383
           E D  KN K + +N+M PSV+ +LMDDFLEMERLAALP+TE+RS C+E G  SD+     
Sbjct: 306 ELDRFKNEKPLVKNLMAPSVEXDLMDDFLEMERLAALPETENRSRCLESGAISDKHIGGS 365

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           ES +KA+LE +I RTAELEE+LE M AEK EL+M L E Q +LETSQ +LKE E KL EL
Sbjct: 366 ESPLKAQLEAMIDRTAELEEKLEKMEAEKMELDMALSECQNQLETSQGRLKEVEEKLVEL 425

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
           +TQLA A++SK+  E E++A  A R VAES+L  VEAE+KT L                 
Sbjct: 426 QTQLALASESKRNAEEEIQATNAKREVAESRLIXVEAEIKTML----------------- 468

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
                                 SKV+SLE+EVEKERALS E  +  +K +DELS++K+E 
Sbjct: 469 ----------------------SKVLSLEEEVEKERALSAEAASKCRKFEDELSRMKRET 506

Query: 564 ELQHEVKLQYLAGSNQELKINQ 585
           EL++      LA SN ELKI Q
Sbjct: 507 ELRN------LASSNGELKIKQ 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480767|ref|XP_003632521.1| PREDICTED: filament-like plant protein 3-like isoform 2 [Vitis vinifera]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 336/591 (56%), Positives = 410/591 (69%), Gaps = 91/591 (15%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ + +Q+S   E TSK+ P+DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPNQNSPSPEVTSKSAPVDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           VNDSVK+LTEKLSAALLN+SAKEDLVKQHAKVAEEAVSGWEKAENE+ +LKQQL+AA+QK
Sbjct: 60  VNDSVKSLTEKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAENEVFSLKQQLEAAAQK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLDGALKEC+RQLRQAREEQEQ+I E V K+  EWES KSELES++V++Q 
Sbjct: 120 NSALEDRVGHLDGALKECLRQLRQAREEQEQKIHEAVVKRTHEWESTKSELESQIVEIQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAK+E  A+ D  L  KL AAEK+N+ALKL+LLS  +ELE+R +E++LST+AAETAS
Sbjct: 180 QLQTAKAETVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTIEQELSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQ+LESIKK+AK+EAEC RLKA+ RKAS   ++KS TPS                     
Sbjct: 240 KQNLESIKKVAKLEAECRRLKAMARKASSANDHKSITPS--------------------- 278

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
                              S SWAS L  E D  KN K + +N+M PSV+++LMDDFLEM
Sbjct: 279 ------------------RSDSWASGLIQELDRFKNEKPLVKNLMAPSVELDLMDDFLEM 320

Query: 356 ERLAALPDTESRSFCVEVGPASDQP-NADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERLAALP+TE+RS C+E G  SD+     ES +KA+LE +I RTAELEE+LE M AEK E
Sbjct: 321 ERLAALPETENRSRCLESGAISDKHIGGSESPLKAQLEAMIDRTAELEEKLEKMEAEKME 380

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           L+M L E Q +LETSQ +LKE E KL EL+TQLA A++SK+  E E++   A R VAES+
Sbjct: 381 LDMALSECQNQLETSQGRLKEVEEKLVELQTQLALASESKRNAEEEIQTTNAKREVAESR 440

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
           L  VEAE+KT L                                       SKV+SLE+E
Sbjct: 441 LIAVEAEIKTML---------------------------------------SKVLSLEEE 461

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           VEKERALS E  +  +K +DELS++K+E EL++      LA SN ELKI Q
Sbjct: 462 VEKERALSAEAASKCRKFEDELSRMKRETELRN------LASSNGELKIKQ 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083536|ref|XP_002307062.1| predicted protein [Populus trichocarpa] gi|222856511|gb|EEE94058.1| predicted protein [Populus trichocarpa]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 319/590 (54%), Positives = 399/590 (67%), Gaps = 82/590 (13%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQ---THSSQSSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ   TH+ QS E TS+A   DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPTHNPQSPEVTSEALLTDED 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           + D+V+TLT+KLSAALLN+SAKE+LVKQHAKVAEEAVSGWEKAE ELS LKQQ++A ++K
Sbjct: 60  IRDNVRTLTDKLSAALLNLSAKEELVKQHAKVAEEAVSGWEKAEKELSALKQQIEAGTKK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NS LE+RVSHLD ALKECVRQLRQ+REEQE+RI E V+K+  E ES KSELE++L++LQ 
Sbjct: 120 NSGLEDRVSHLDAALKECVRQLRQSREEQERRINEAVTKKICERESTKSELEAQLIELQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAKS+A  SAD +L  KL A EK+N +LK EL S  +E+++RI+ERDLST+AAETAS
Sbjct: 180 RLQTAKSDATVSADSELWQKLNAVEKENLSLKRELFSRAEEIQVRILERDLSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           K  LESIKKLAK+EAEC +L A+                                     
Sbjct: 240 KLQLESIKKLAKLEAECRKLLAI------------------------------------- 262

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+D+CK S  E+NEC+   S SWA A A E D  K  + +GRNVM PS++INLMDDFLEM
Sbjct: 263 ESDSCKRSGLEMNECDQICSDSWACAHATELDQSKKQRPIGRNVMAPSLEINLMDDFLEM 322

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSEL 415
           ERLAAL DTES    +E GP SD+ N   + +K ELE +I+RT ELEE+L+ M  EK + 
Sbjct: 323 ERLAALLDTESGISYLEAGPVSDKGNGSGNPLKEELESIINRTTELEEKLDKMEEEKFKS 382

Query: 416 EMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475
           EM L E QR+LET ++QLKEA+ K+EEL+  L  AN+S+QA E E+  + + R   ES+L
Sbjct: 383 EMALTECQRQLETLRSQLKEADAKMEELQDLLTLANESRQAREEEIMRSDSKRKETESQL 442

Query: 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535
            + EAE+K                                       TL SK++SL+ EV
Sbjct: 443 RIAEAEIK---------------------------------------TLLSKIVSLDAEV 463

Query: 536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           EKERALS EN A  Q+ +DELSK+K E+ELQHE++ + +A  N+ELKI Q
Sbjct: 464 EKERALSAENAAKSQELEDELSKMKCEVELQHEIERKRIASFNEELKITQ 513

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480769|ref|XP_002273488.2| PREDICTED: filament-like plant protein 3-like isoform 1 [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 344/591 (58%), Positives = 420/591 (71%), Gaps = 78/591 (13%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ + +Q+S   E TSK+ P+DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPNQNSPSPEVTSKSAPVDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           VNDSVK+LTEKLSAALLN+SAKEDLVKQHAKVAEEAVSGWEKAENE+ +LKQQL+AA+QK
Sbjct: 60  VNDSVKSLTEKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAENEVFSLKQQLEAAAQK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLDGALKEC+RQLRQAREEQEQ+I E V K+  EWES KSELES++V++Q 
Sbjct: 120 NSALEDRVGHLDGALKECLRQLRQAREEQEQKIHEAVVKRTHEWESTKSELESQIVEIQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAK+E  A+ D  L  KL AAEK+N+ALKL+LLS  +ELE+R +E++LST+AAETAS
Sbjct: 180 QLQTAKAETVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTIEQELSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQ+LESIKK+AK+EAEC RLKA+ RKAS   ++KS T SS+ V S TDSQS         
Sbjct: 240 KQNLESIKKVAKLEAECRRLKAMARKASSANDHKSITASSVCVESLTDSQS--------- 290

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
                            +SS SWAS L  E D  KN K + +N+M PSV+++LMDDFLEM
Sbjct: 291 -----------------DSSDSWASGLIQELDRFKNEKPLVKNLMAPSVELDLMDDFLEM 333

Query: 356 ERLAALPDTESRSFCVEVGPASDQP-NADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERLAALP+TE+RS C+E G  SD+     ES +KA+LE +I RTAELEE+LE M AEK E
Sbjct: 334 ERLAALPETENRSRCLESGAISDKHIGGSESPLKAQLEAMIDRTAELEEKLEKMEAEKME 393

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           L+M L E Q +LETSQ +LKE E KL EL+TQLA A++SK+  E E++   A R VAES+
Sbjct: 394 LDMALSECQNQLETSQGRLKEVEEKLVELQTQLALASESKRNAEEEIQTTNAKREVAESR 453

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
           L  VEAE+KT L                                       SKV+SLE+E
Sbjct: 454 LIAVEAEIKTML---------------------------------------SKVLSLEEE 474

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           VEKERALS E  +  +K +DELS++K+E EL++      LA SN ELKI Q
Sbjct: 475 VEKERALSAEAASKCRKFEDELSRMKRETELRN------LASSNGELKIKQ 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527538|ref|XP_003532366.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 320/628 (50%), Positives = 410/628 (65%), Gaps = 92/628 (14%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQ-------THSSQSSEATSKAPP 53
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q       T ++ S E TSKA P
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSLSERFSDEQDVVKVYPTQAAFSPEVTSKAAP 59

Query: 54  LDEVVND-------SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELST 106
            +EV N         +K LT+KL+AALL +SAKEDLVKQH+KVAEEAVSGWEKAENE+S+
Sbjct: 60  NEEVSNPKKSKEDTGLKILTDKLAAALLTISAKEDLVKQHSKVAEEAVSGWEKAENEVSS 119

Query: 107 LKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKS 166
           LKQQL AA QKNS LE+RV HLDGALKEC+RQLRQARE QEQ++ E V   + +WESKKS
Sbjct: 120 LKQQLDAARQKNSILEDRVGHLDGALKECMRQLRQARELQEQKMVEAVVNSSRDWESKKS 179

Query: 167 ELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVER 226
           ELE K+ + + +LQTAK++AAAS   DL  +LEA + +NS+LK EL S ++ELE RIVER
Sbjct: 180 ELERKVAEFEAQLQTAKADAAASIHFDLHQRLEAVQNENSSLKHELQSRLEELEFRIVER 239

Query: 227 DLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDS 286
           DLS++AAETASKQHLES+KK+AK+EAEC RLKA+ RK     +++S T SS+YV SFTDS
Sbjct: 240 DLSSQAAETASKQHLESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYVESFTDS 299

Query: 287 QSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSV 344
            SD+G                E+NECE     S +S+  +E D  KN KA G+N +V S 
Sbjct: 300 MSDSG---------------WEMNECELRRFDSCSSSFVMELDQFKNEKANGKNHVVSST 344

Query: 345 DINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEE 404
           +INLMDDFLEMERLA LPD+ES S  V    ASDQ N  +++IKAE+E +I + AELE++
Sbjct: 345 EINLMDDFLEMERLATLPDSESGSNFVRKEVASDQSNVGQATIKAEIEAMIEKNAELEKK 404

Query: 405 LENMRAE---------------------KSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           L  M AE                     K E++M L + Q +LETS++Q++EAELK+   
Sbjct: 405 LGKMEAEMEGMIQKNVELEKKLKKMEAGKVEVDMVLTKYQMQLETSESQIREAELKV--- 461

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
                                               AE +TQLALA KS Q A EE+K+ 
Sbjct: 462 ------------------------------------AEFQTQLALAKKSNQEACEELKAT 485

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
           K+KKE  ES L+  E E+E L SK+ SLE+E+ KERALS EN       + ELSK+K ++
Sbjct: 486 KAKKEIVESTLKHTETEVEELISKIRSLEEEIHKERALSTENSIKCGNLEVELSKMKHKV 545

Query: 564 ELQHEVKLQYLAGSNQELKINQVSGLSF 591
           ++Q + ++++  G N +LK+ Q   L+ 
Sbjct: 546 QVQQDTEIKHTEGVNLDLKLKQEKDLAL 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512872|ref|XP_003525139.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 309/608 (50%), Positives = 406/608 (66%), Gaps = 67/608 (11%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVND 60
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q   ++      K+   D     
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSLSERFSDEQAAPNEEVSTPKKSKEED----T 55

Query: 61  SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSA 120
            VK +T+KL+ ALL +SAKEDLVKQH+KVAEEAVSGWEKAENE+S+LKQ+L A  +KNS 
Sbjct: 56  DVKIITDKLATALLTISAKEDLVKQHSKVAEEAVSGWEKAENEVSSLKQKLDAERKKNSI 115

Query: 121 LENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180
           LE+RV HLDGALKEC+RQLRQARE QEQ+I E V   + +WESKKSELE K+ +L+ +LQ
Sbjct: 116 LEDRVGHLDGALKECMRQLRQAREVQEQKIVEAVVNSSRDWESKKSELERKVAELEAQLQ 175

Query: 181 TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
           T K++AAAS   DL  +LEA +K+NS+LK EL S ++ELE RIVERDL ++AAETASKQH
Sbjct: 176 TVKADAAASIRFDLHQRLEAVQKENSSLKHELQSRLEELEFRIVERDLRSQAAETASKQH 235

Query: 241 LESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETD 300
           LES+KK+AK+EAEC RLKA+ RK     +++S T SS+Y  SFTDS SD+G+RLL  E+D
Sbjct: 236 LESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYAESFTDSMSDSGDRLLAVESD 295

Query: 301 NCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEMERL 358
             K+   E+NECE +   S +S+L +E D  KN K  G+N  VPS +INLMDDFLEMERL
Sbjct: 296 MRKLGGWEMNECELSRFDSCSSSLVMELDQFKNEKGNGKNHAVPSTEINLMDDFLEMERL 355

Query: 359 AALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAE------- 411
           AALPD ES S  V  G ASDQ N  ++++KAE+E +I +  ELE++L  M AE       
Sbjct: 356 AALPDGESGSSFVREGVASDQSNVGQATMKAEIEAMIQKDDELEKKLGKMEAEMEAMIQK 415

Query: 412 --------------KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457
                         K E++M L + Q +LETS++Q +EAELK+                 
Sbjct: 416 NVELEKKLKKMEAGKVEVDMVLTKYQMQLETSESQTREAELKV----------------- 458

Query: 458 EVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAV 517
                                 AE +TQLALA KS Q A EE+K+ K+KK   ES L+  
Sbjct: 459 ----------------------AEFQTQLALAKKSNQEACEELKATKAKKAIVESTLKLT 496

Query: 518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGS 577
           + E+E L S++ SLE++++KERALS +N   + K +DELSK+K ++ +Q + ++++    
Sbjct: 497 QTEVEELISQIRSLEEKIQKERALSAKNSIKWGKLEDELSKMKHKVLVQQDTEIKHRECV 556

Query: 578 NQELKINQ 585
           N +LK+ Q
Sbjct: 557 NLDLKLKQ 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520147|ref|XP_003630362.1| Filament-like plant protein [Medicago truncatula] gi|355524384|gb|AET04838.1| Filament-like plant protein [Medicago truncatula]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 305/598 (51%), Positives = 390/598 (65%), Gaps = 73/598 (12%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQ---SSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q +  Q   S E TSK  P +EV
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSLSSLSERFSDEQVYPIQATLSPEVTSKLAPNEEV 59

Query: 58  -----VND---SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ 109
                 N+    VKTLT +L+AALL +SAKED+VKQH+KVAEEA+SGWEKAENE+S+LKQ
Sbjct: 60  STPKKYNEEGIDVKTLTNELAAALLEISAKEDMVKQHSKVAEEAISGWEKAENEVSSLKQ 119

Query: 110 QLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELE 169
           QL AA QKNS LE+RVSHLDGALKEC+RQLRQARE QEQ+I E V+  + +  S++ ELE
Sbjct: 120 QLDAARQKNSGLEDRVSHLDGALKECMRQLRQAREVQEQKIHEAVANNSHDSGSRRFELE 179

Query: 170 SKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLS 229
            K+ +L+ +LQT+K+EAAAS   DL  +LEA EK+NS+L+LEL S ++ELE RI ERDLS
Sbjct: 180 RKVAELEAQLQTSKAEAAASIRSDLQRRLEAVEKENSSLQLELQSRLEELEFRIAERDLS 239

Query: 230 TKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSD 289
           T+AAETASKQHLES KK+AK+EAEC RLK++ RK     +N+S T SS+Y+ S TDS SD
Sbjct: 240 TQAAETASKQHLESTKKVAKLEAECRRLKSMTRKTFNVNDNRSLTASSVYIESLTDSISD 299

Query: 290 NGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDIN 347
            G                E+NE EP+ S S +SAL  E D  KN K   +N +  S +IN
Sbjct: 300 GG----------------ELNEYEPSCSDSCSSALITEFDQFKNKKVTRKNHIATSTEIN 343

Query: 348 LMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELEN 407
           LMDDFLEMERLAALPDTES S     G   DQ    + +    +E +I + AELE++LE 
Sbjct: 344 LMDDFLEMERLAALPDTESGSHYANGGRVLDQSIVGQGT----MEAMIEKNAELEKKLEK 399

Query: 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467
           M A K ++EM L E Q +LE S+N+++ AELK+EEL+TQLA ANKS Q    E+K     
Sbjct: 400 MEAAKLDVEMSLTECQMQLEKSENRIRAAELKVEELQTQLALANKSNQEAYEELKETKTK 459

Query: 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527
           + + ESK                                       L+  + E+E L SK
Sbjct: 460 KEIVESK---------------------------------------LKFAQTEVEELISK 480

Query: 528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           + SLE+E++KERALS EN    +K + ELS++K E ++Q + K  +    N++LK  Q
Sbjct: 481 IHSLEEEIQKERALSAENSIKSRKLEGELSRMKHEAQVQQDAKTLHKENINRDLKSKQ 538

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082296|ref|XP_002306637.1| predicted protein [Populus trichocarpa] gi|222856086|gb|EEE93633.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 299/604 (49%), Positives = 388/604 (64%), Gaps = 91/604 (15%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQ-------THSSQSSEATSKAPP 53
           M++R WLW+RKS   ++G ET+SSGS++S SERFSDDQ       T S+QS E TSK   
Sbjct: 1   MEKRKWLWKRKSSERSSG-ETDSSGSITSHSERFSDDQDPSKASTTDSAQSPEVTSKTVT 59

Query: 54  LDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKA 113
            DE VNDS K+LTEKLSAAL+NVSAK+DLVKQHAKVAEEAV+GWEKAENE+  LK+Q++ 
Sbjct: 60  RDEDVNDSDKSLTEKLSAALVNVSAKDDLVKQHAKVAEEAVAGWEKAENEVMALKKQIEV 119

Query: 114 ASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLV 173
           A+Q+ SALE+RVSHLDGALK+CVRQLRQAREEQE+++ E V +++LEWES KSELE++ +
Sbjct: 120 ANQQKSALEDRVSHLDGALKDCVRQLRQAREEQEEKLHEAVVQKSLEWESIKSELENQFI 179

Query: 174 DLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAA 233
           +L+ K   A SE+ A    +LC KLE  E++N+ LK+ELLS  +ELE R VERDLST+AA
Sbjct: 180 ELKTKEAAANSESPALIVDELCQKLEYLEQENATLKVELLSQSEELEARTVERDLSTQAA 239

Query: 234 ETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGER 293
           ETASKQHLESIKK+ ++EAEC RLKA+  K+S   ++K+   SS+YV SFTDSQSD+GE+
Sbjct: 240 ETASKQHLESIKKVVRLEAECRRLKAMACKSSSVNDHKTSAASSVYVESFTDSQSDSGEK 299

Query: 294 LLGNETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDD 351
           L     D  K+S S   + E   S SWASAL  E D  KN K++ RN+    V+I+LMDD
Sbjct: 300 LNAVVLDARKVSCSGPYKSEQICSDSWASALISEVDQFKNEKSINRNLPASPVEIDLMDD 359

Query: 352 FLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENM--- 408
           FLEMERLAALP+ E+ +       A+ Q    ESS++AE E +I R+AELEE+L+ M   
Sbjct: 360 FLEMERLAALPENEAGTDNSRAEDAAKQSIDAESSLRAEREFIIKRSAELEEKLQKMEEE 419

Query: 409 -------------------------RAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
                                    +AE+ ELEM L ESQ + E SQ QL+EA+ KL EL
Sbjct: 420 KFVLEEKLRKMEGETFVLEEKLEEIKAERDELEMALTESQDKNEASQLQLREAQQKLVEL 479

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
           + +L+ AN+SKQ +              ES+L  +E E +                    
Sbjct: 480 QEELSMANESKQQI--------------ESRLVSMEVEAR-------------------- 505

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
                              T+ +KV SLE E+EKER LS    A +Q+ ++ LS+ KQE 
Sbjct: 506 -------------------TMSAKVNSLEGEIEKERVLSTGIAAKYQELEENLSRKKQEE 546

Query: 564 ELQH 567
           ELQ 
Sbjct: 547 ELQQ 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518810|ref|XP_003528070.1| PREDICTED: filament-like plant protein-like [Glycine max]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 303/588 (51%), Positives = 382/588 (64%), Gaps = 53/588 (9%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSW WRRKS   + G ETESSGS+SS SERF DDQ + +Q++   E   +A P DE 
Sbjct: 1   MDRRSWPWRRKSSEKSPG-ETESSGSMSSHSERFFDDQVYPTQTTPPPEGMFEAAPNDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
            ND VKTLTE+LSAALLN  AKEDL KQHAKVAEEAVSGWEKAENEL  LKQQL    Q+
Sbjct: 60  AND-VKTLTERLSAALLNSRAKEDLAKQHAKVAEEAVSGWEKAENELLILKQQLIDGKQQ 118

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NS LE++VSHL+ ALKEC+R LRQA+EEQEQ+I E ++  +   ESK+ + E      + 
Sbjct: 119 NSVLEDQVSHLNEALKECMRNLRQAKEEQEQKIHEALTNNSYGLESKRPDHE-----WKV 173

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
            +      AA+S   DL  +LE  EK+N++LK+EL S ++ELE R +ER+LST+AAE AS
Sbjct: 174 VVAAKADAAASSVHLDLQQRLEGKEKENASLKIELQSRLEELEFRTIERNLSTQAAEAAS 233

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQHLESIK +AK+EAEC RLKAV RK     +++S   SS+YV SFTDS SD GER L  
Sbjct: 234 KQHLESIKTVAKLEAECRRLKAVTRKTLSANDHRSLASSSVYVESFTDSMSDIGERQLIV 293

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+D  K+   ++NE EPN   SW S L  E D  KN    G+N MV S +INLMDDFLEM
Sbjct: 294 ESDMRKLGGWDMNEGEPNHHDSWPSTLIKELDQFKNENTAGKNSMVFSTEINLMDDFLEM 353

Query: 356 ERLAALPDTES-RSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERL ALPDTES  SF VE G ASDQ N    +  AE+E ++ + A LE++LE M AEK E
Sbjct: 354 ERLVALPDTESVSSFPVE-GAASDQLNVGPRTKNAEVEAIVQKNAALEKKLEKMEAEKLE 412

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           LEMDL E Q++LE S +++KE EL++                                  
Sbjct: 413 LEMDLTECQKQLEASLSRIKEVELEV---------------------------------- 438

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
                 E++T+LALAN S + A E++++ + KKE AES+LR    E E L SK+ SLE+E
Sbjct: 439 -----VELQTKLALANNSNEEAYEKLEATEEKKEIAESKLRVAHTEAEELVSKICSLEEE 493

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELK 582
           +EKERALS EN+A   K +DEL ++K E +L  +  +    G N ELK
Sbjct: 494 IEKERALSTENMAKCGKLEDELLRIKNEAQLHKDTLILPGEGVNSELK 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
TAIR|locus:2204755	779	AT1G77580 [Arabidopsis thalian	0.867	0.661	0.305	1.5e-47
TAIR|locus:2824556	982	AT1G19835 "AT1G19835" [Arabido	0.227	0.137	0.407	3.1e-31
TAIR|locus:2135154	996	AT4G36120 "AT4G36120" [Arabido	0.156	0.093	0.49	9.3e-27
TAIR|locus:2204990	1054	AT1G47900 "AT1G47900" [Arabido	0.132	0.074	0.531	3.3e-25
TAIR|locus:2090684	704	AT3G19370 [Arabidopsis thalian	0.377	0.318	0.209	2.4e-07
ZFIN|ZDB-GENE-050531-1	1974	myh11a "myosin, heavy polypept	0.627	0.188	0.191	0.00012
UNIPROTKB|P49454	3210	CENPF "Centromere protein F" [	0.432	0.080	0.185	0.00016
RGD|1306536	1324	Rrbp1 "ribosome binding protei	0.432	0.194	0.190	0.00043
UNIPROTKB|Q14BN4	828	SLMAP "Sarcolemmal membrane-as	0.609	0.437	0.208	0.00045
ZFIN|ZDB-GENE-100917-2	4530	plecb "plectin b" [Danio rerio	0.873	0.114	0.188	0.0007

TAIR|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
 Identities = 174/570 (30%), Positives = 260/570 (45%)

Query:    37 DQTHSSQSSEATSKAPPLD-----EVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAE 91
             + T  S+  E  S    L+     E + DS+KTL EKLSAAL NVSAK+DLVKQH KVAE
Sbjct:    32 ESTMESRDDEIQSPTVSLEVETEKEELKDSMKTLAEKLSAALANVSAKDDLVKQHVKVAE 91

Query:    92 EAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVXXXXXXXXXXXXXXX 151
             EAV+GWEKAENE+  LK++L+AA  KN  LE+RVSHLDGALKECV               
Sbjct:    92 EAVAGWEKAENEVVELKEKLEAADDKNRVLEDRVSHLDGALKECVRQLRQARDEQEQRIQ 151

Query:   152 XTVSKQNXXXXXXXXXXXXXXVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAXXXX 211
               V ++                  +  L+    E A  ++ +L    E+  K+N      
Sbjct:   152 DAVIERTQELQSS-----------RTSLENQIFETATKSE-ELSQMAESVAKENVMLRHE 199

Query:   212 XXXXXXXXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENK 271
                       R +ERDLST+AAETASKQ L+SIKK+AK+EAEC + + + + ++   +++
Sbjct:   200 LLARCEELEIRTIERDLSTQAAETASKQQLDSIKKVAKLEAECRKFRMLAKSSASFNDHR 259

Query:   272 SFTPSSIYVGSFTD-SQSDN--GERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEP 328
             S T S    G   D S SD+     L+   +     S  E++            AL   P
Sbjct:   260 S-TDSHSDGGERMDVSCSDSWASSTLIEKRSLQGTSSSIELDLMGDFLEMERLVALPETP 318

Query:   329 DKNVKA----VGRNVMVPSV-----DINLMDDFL-EMERLAALPDTESRSFCVEVGPASD 378
             D N K+    V   V+VPS      +I ++   + E+E      + E      EV     
Sbjct:   319 DGNGKSGPESVTEEVVVPSENSLASEIEVLTSRIKELEEKLEKLEAEKHELENEV----- 373

Query:   379 QPNADESSIKAE-LEVLIHRTAXXXXXXXNMRAEKSELEMDLK-ESQRRLETSQNXXXXX 436
             + N +E+ +  E  EVL  RT         + AEK EL+ ++K   ++ +   +N     
Sbjct:   374 KCNREEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELKSEVKCNREKAVVHVENSLAAE 433

Query:   437 XXXXXXXXXXXXFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANXXXXXX 496
                            +  +A +VE+++ +      E  ++ VE  + T++ +        
Sbjct:   434 IEVLTSRTKELEEQLEKLEAEKVELESEVKCN--REEAVAQVENSLATEIEVLTCRIKQL 491

Query:   497 XXXXXXXXXXXXXXXXRL---RAVEA----EMETLRSKVISLEDEVEKERALSEENIANF 549
                              +   R VE+    E+E +  + + LE+++EK      E   +F
Sbjct:   492 EEKLEKLEVEKDELKSEVKCNREVESTLRFELEAIACEKMELENKLEKLEVEKAELQISF 551

Query:   550 Q--KSKDELSKV-KQEIE-----LQHEVKL 571
                K K E S+V  QEIE     +Q E+KL
Sbjct:   552 DIIKDKYEESQVCLQEIETKLGEIQTEMKL 581

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 3.1e-31, Sum P(3) = 3.1e-31
 Identities = 57/140 (40%), Positives = 77/140 (55%)

Query:     1 MDRRSWLWRRKXXXXXXXXXXXXXXXXXX--XXXRFSDDQ-TH-SSQSSEATSKAPPLDE 56
             MDR+SW W++K                       + S DQ T+ +    E  S    + +
Sbjct:     1 MDRKSWPWKKKSSEKTATVTEVVDQENGKKPSYIQISFDQYTNLNGLKDEVKSYEEKVTK 60

Query:    57 VVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQ 116
             +  D +K L  KLS A  ++ AKE LVKQH+KVAEEAV+GWEKAE E S LK  L+  + 
Sbjct:    61 L-EDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKTHLETITL 119

Query:   117 KNSALENRVSHLDGALKECV 136
                 +E+R +HLDGALKEC+
Sbjct:   120 AKLTVEDRAAHLDGALKECM 139

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 9.3e-27, Sum P(4) = 9.3e-27
 Identities = 49/100 (49%), Positives = 61/100 (61%)

Query:    36 DDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVS 95
             D  TH S+  +       L EV    VK L EKL+ A   ++ KE L+ QHAKVAEEAVS
Sbjct:    56 DSYTHMSRMEDQVK----LFEV---QVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVS 108

Query:    96 GWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC 135
             GWEKA+ E   LK+QL++ +      E+R SHLD ALKEC
Sbjct:   109 GWEKADAETLALKRQLESVTLLKLTAEDRASHLDDALKEC 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.3e-25, Sum P(3) = 3.3e-25
 Identities = 42/79 (53%), Positives = 55/79 (69%)

Query:    58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
             +N+ V+ L EKLS A   +  KE LVKQH+KVAE+AVSGWEKA+ E   LK  L++ +  
Sbjct:   111 LNEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTLS 170

Query:   118 NSALENRVSHLDGALKECV 136
                 E+R +HLDGALKEC+
Sbjct:   171 KLTAEDRAAHLDGALKECM 189

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
 Identities = 52/248 (20%), Positives = 98/248 (39%)

Query:    38 QTHSSQSSEATSKAPPLDEVVNDSV-KTLTEKLSAALLNVSAKEDLVKQHAK--VAEEAV 94
             Q  S +        PP+  V ++   K+L+EKL    LN   K+  V  + +  V +E  
Sbjct:    20 QVSSRRGRGQARMVPPVSGVRSERARKSLSEKLETVALNSPKKDARVSLYGEKSVVDEIF 79

Query:    95 ---------SGWEKAENE-----LSTLKQQLKAASQKNSA--LENRVSHLDGALKECVXX 138
                      +G +  E+         L Q+++   + + A  L+N       ++K+    
Sbjct:    80 LEDEEMGHETGLKNGESSPFCGVSDKLLQRIELLGRDHEATRLDNNKFRSIESMKKRQEE 139

Query:   139 XXXXXXXXXXXXXXTVSKQNXXXXXXXXXXXXXXVDLQKKLQTAKSEAAASADRDLCSKL 198
                           T++ +N              V LQ++    +SE  A     L ++L
Sbjct:   140 SACDDLVDMKTKIQTLAAENTQLKKSLVAKEELAVSLQERKFQVESEFEA-----LMTRL 194

Query:   199 EAAEKQNSAXXXXXXXXXXXXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258
             ++ EK+N+               +  E + + ++ E   KQ L ++ K+ ++EAEC RL+
Sbjct:   195 DSTEKENAFLRYEYTVLEKDLQVKTEETEHTRRSMELTHKQQLRNVNKIVELEAECQRLR 254

Query:   259 AVVRKASP 266
              + RK  P
Sbjct:   255 LLFRKKFP 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

ZFIN|ZDB-GENE-050531-1 myh11a "myosin, heavy polypeptide 11, smooth muscle a" [Danio rerio (taxid:7955)]

 Score = 94 (38.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
 Identities = 78/408 (19%), Positives = 153/408 (37%)

Query:    43 QSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAEN 102
             Q+++   +   L+E + D    L E+   +  N++  ++  +      E  +   EK   
Sbjct:   991 QNNKLQKERKILEERIADFSSNLAEEEEKSK-NLTKLKNKHESMISELEVRLKKEEKTRQ 1049

Query:   103 ELSTLKQQLKAASQKNSALENRVSHLDGA---LKECVXXXXXXXXXXXXXXXXTVSKQNX 159
             EL   K++L+A S     L+ +++ L      LK  +                   ++N 
Sbjct:  1050 ELDKAKRKLEAESND---LQEQIADLQAQIADLKAQLAKKEEELQAALARLEDETGQKNN 1106

Query:   160 XXXXXXXXXXXXXVDLQKKLQTAKS--EAAASADRDLCSKLEAAEKQNSAXXXXXXXXXX 217
                           DLQ+ L++ ++    A    RDL  +LEA + +             
Sbjct:  1107 ALKKIRELEGHIS-DLQEDLESERAARNKAEKTKRDLGEELEALKSELEDTLDTTATQQE 1165

Query:   218 XXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECL-----------RLKAVVRKASP 266
                 R  E  L  +A E  S+ H   ++++ +   + L           R+K  + KA  
Sbjct:  1166 LRAKREQEVTLLKRAIEDESRVHEAQVQEMRQKHTQALEELTEQLEQSKRVKVNLEKAKQ 1225

Query:   267 NTENKSFTPSSIYVGSFTDSQSD---NGERLLGNETD-NCKISDSEVNECEPNSSTSWAS 322
               E K  +   + + S T  + D     ++L G   D   + +DSE ++ E     S  +
Sbjct:  1226 ALE-KETSELHVELRSLTQGKQDVEHKKKKLEGQLADLQSRFNDSERHKAELGDRVSKIT 1284

Query:   323 ALAIEPDKNV--KAVGRNVMVPSVDI-NLMDDFLEMERLAALPDTESRSFCVEVGPASDQ 379
              + +E   N+  +A G+N+ + S D+ +L     + + L A    +      ++    D 
Sbjct:  1285 -VELESVTNLLNEAEGKNIKL-SKDVASLSSQVQDTQELLAEETRQKLQLSTKLRQIEDD 1342

Query:   380 PNADESSIKAELEVLIHRTAXXXXXXXNMRAEKSELEMDLKESQRRLE 427
              NA +  +  E E    R         N++   S+ +  L+E    +E
Sbjct:  1343 RNALQEQLDEEAEA--KRNVERHVSTLNIQL--SDFKKKLEEMTGNVE 1386

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030860 "regulation of polarized epithelial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P49454 CENPF "Centromere protein F" [Homo sapiens (taxid:9606)]

 Score = 85 (35.0 bits), Expect = 0.00016, Sum P(3) = 0.00016
 Identities = 52/280 (18%), Positives = 112/280 (40%)

Query:   222 RIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVG 281
             R VE  L  +  E  SK HL+ ++ + K+EA C+ L+ +V +     EN   +    Y  
Sbjct:  1891 RKVE-SLLNEMKELDSKLHLQEVQLMTKIEA-CIELEKIVGELKK--ENSDLSEKLEYFS 1946

Query:   282 SFTDSQS-----DNGERLLGN-ETDNCKISDSEVNECEPNSSTSWASA-LAIEPD-KNVK 333
                D Q      +  E L  + E    K S  ++ +     + SW    L +E +   ++
Sbjct:  1947 C--DHQELLQRVETSEGLNSDLEMHADKSSREDIGDNVAKVNDSWKERFLDVENELSRIR 2004

Query:   334 AVGRNVMVPSVDINLMDDFLEMERLAALPDTESRS---FCVEVGPASDQPNADESSIKAE 390
             +   ++   ++ +    + ++ E+L    D E++     C+E         ++ + ++ E
Sbjct:  2005 SEKASIEHEALYLEADLEVVQTEKLCLEKDNENKQKVIVCLE--EELSVVTSERNQLRGE 2062

Query:   391 LEVLIHRTAXXXXXXXNMRAEKSELEMDLKESQRRLETSQNXXXXXXXXXXXXXXXXXFA 450
             L+ +  +T         M+ +  ELE    E    ++ ++                    
Sbjct:  2063 LDTMSKKTTALDQLSEKMKEKTQELESHQSECLHCIQVAEAEVKEKTELLQTLSSDVSEL 2122

Query:   451 NKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALAN 490
              K K  ++ ++++ +     A   LS+ + E++ Q+A  N
Sbjct:  2123 LKDKTHLQEKLQS-LEKDSQA---LSLTKCELENQIAQLN 2158

GO:0006260 "DNA replication" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0000922 "spindle pole" evidence=IDA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP;IDA;TAS

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA;TAS

GO:0000278 "mitotic cell cycle" evidence=IMP;TAS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0007059 "chromosome segregation" evidence=IMP;NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0051382 "kinetochore assembly" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007094 "mitotic spindle assembly checkpoint" evidence=NAS

GO:0051310 "metaphase plate congression" evidence=IDA

GO:0045502 "dynein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008283 "cell proliferation" evidence=NAS

GO:0042493 "response to drug" evidence=NAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0000785 "chromatin" evidence=NAS

GO:0003682 "chromatin binding" evidence=NAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0016363 "nuclear matrix" evidence=IDA

GO:0015031 "protein transport" evidence=IMP;IDA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0016202 "regulation of striated muscle tissue development" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0030496 "midbody" evidence=IDA

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

RGD|1306536 Rrbp1 "ribosome binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 92 (37.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
 Identities = 52/273 (19%), Positives = 108/273 (39%)

Query:    46 EATSKAPP---LDEVVNDSVKTL-TEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAE 101
             +AT K  P   L   + +  K L TE+  AA+     +E L K+ A    +A +G  K +
Sbjct:   608 KATQKGDPVAVLKRQLEEKEKLLATEQEDAAVAKSKLRE-LNKEMASEKAKAAAGEAKVK 666

Query:   102 NELSTLKQQLKAASQKNSA-LENRVSHLDGALKECVXXXXXXXXXXXXXXXXTVSKQNXX 160
              +L   +Q++ A   +  A  ++ V  +   L+  +                 + ++N  
Sbjct:   667 KQLVAREQEIAAVQARMQASYQDHVKEVQ-QLQGKIRTLQEQLENGPNTQLARLQQENSI 725

Query:   161 XXXXXXXXXXXXVDLQKKLQTAK-SEAAASADRDLCSKLEAAEKQNSAXXXXXXXXXXXX 219
                         V+ ++  + AK  +  +  +++L  K EA+ +Q               
Sbjct:   726 LRDALNQATSQ-VESKQNTELAKLRQELSKVNKELVEKSEAS-RQEEQQRKALEAKAATF 783

Query:   220 XXRIVERDLSTKAAETASKQHLESI-KKLAKVEAECLRLKAVVRKASPNTE-----NKSF 273
               +I++   S K +E A ++ LE + ++L + +     L+A   KA    +     +   
Sbjct:   784 EKQILQLQASHKESEEALQKRLEEVTRELCRAQTSHANLRADAEKAQEQQQRVAELHSKL 843

Query:   274 TPSSIYVGSFTDSQSDNGERLLGNETDNCKISD 306
               S + V S  +  SD   +L     +N ++++
Sbjct:   844 QSSEVEVKSKCEELSDLHGQLKEARAENSQLTE 876

GO:0005783 "endoplasmic reticulum" evidence=ISO

UNIPROTKB|Q14BN4 SLMAP "Sarcolemmal membrane-associated protein" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 0.00045, Sum P(2) = 0.00045
 Identities = 83/399 (20%), Positives = 149/399 (37%)

Query:    58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKA---- 113
             VN+ +K L++KL  A       +   +   K  +  +   E+ E EL    + L+A    
Sbjct:   311 VNE-IKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQAKIEALQADNDF 369

Query:   114 ASQKNSALENRVSHL-DGALKEC--VXXXXXXXXXXXXXXXXTVSKQNXXXXXXXXXXXX 170
              +++ +AL+ R+ HL +  LKEC  +                 +  Q             
Sbjct:   370 TNERLTALQVRLEHLQEKTLKECSSLEHLLSKSGGDCTFIHQFIECQKKLIVEGHLTKAV 429

Query:   171 XXVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAXXXXXXXXXXXXXXRIVERDLST 230
                 L K+ QT   E+  S D    SK ++++    A               +++ DL  
Sbjct:   430 EETKLSKENQTRAKESDFS-DTLSPSKEKSSDDTTDAQMDEQDLNEPLAKVSLLKDDLQG 488

Query:   231 KAAETASKQHLESIKK-------LAKVEAE-CLRLKAVV---RKASPNTENKSFTPSSIY 279
               +E  +KQ ++ ++K       LA+   + C  L+A++   RKA  N   +S     I 
Sbjct:   489 AQSEIEAKQEIQHLRKELIEAQELARTSKQKCFELQALLEEERKAYRNQVEES--TKQIQ 546

Query:   280 VGSFTDSQSDNGERLLGNETDNCKIS-DSEVNECEPNSSTSWASALAIEPDKNVKAVGRN 338
             V     +Q       L  +T+N +   DSE+        ++    L +       A  R+
Sbjct:   547 V---LQAQLQR----LHIDTENLREEKDSEITSTRDELLSARDEILLLHQAAAKVASERD 599

Query:   339 VMVPSVDINLMDDFLEMERLA-ALPDTESR------SFCVEVGPASDQPNADESSIKAEL 391
               + S+   L     E+ER   A  + E        SF +      DQ   + + ++ EL
Sbjct:   600 TDIASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQLRCQQCEDQQREEATRLQGEL 659

Query:   392 EVLIHRTAXXXXXXXNMRAEKSELEMDLKESQRRLETSQ 430
             E L            +++ E   L  +L+  ++ L  SQ
Sbjct:   660 EKLRKEWNALETECHSLKRENVLLSSELQRQEKELHNSQ 698

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0042383 "sarcolemma" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 0.00070, Sum P(2) = 0.00070
 Identities = 104/551 (18%), Positives = 192/551 (34%)

Query:    35 SDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAV 94
             ++++ H    ++  ++    DE   ++ K    + SA      A+++L +Q  K+AE   
Sbjct:  1676 AEEEAHKKTLAQEDAEKQK-DEAEREAKKRAKAEESALKQKDMAEQELERQR-KLAESTA 1733

Query:    95 SGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVXXXXXXXXXXXXXXXXTV 154
                  AE+EL  L+     A Q+ S LE+ +  L    K  V                  
Sbjct:  1734 QQKLSAEHELIRLRADFDHAEQQRSLLEDELYRL----KSEVSAAEQQRKQLEDELSKVR 1789

Query:   155 SKQNXXXXXXXXXXXXXXVDLQKKLQTAKSEAAASAD-RDLCSKLEA-AE--KQNSAXXX 210
             S+                   +K  Q  ++EA    D  D  +KL A AE  K+      
Sbjct:  1790 SEMEVLLQLKSKAEKDSMSTTEKSKQLLEAEAGKLRDLADEAAKLRAIAEEAKRQRQVAE 1849

Query:   211 XXXXXXXXXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKA----VVRKASP 266
                        RI++  L+     T  K   E   K  + E E LR KA      RKA  
Sbjct:  1850 EEAARQRAEAERILKEKLAAINEATRLKTEAEIALKEKEAENERLRRKADDEAYQRKALE 1909

Query:   267 N--TENKSFTPSSI-YVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASA 323
             +  +++K      I  +   ++ + D  + ++       +I + E+   + N   + +  
Sbjct:  1910 DQASQHKQDIEQKINQLKKSSEMELDRQKTIVDETLKQKRIVEEEIRILKLNFEKASSGK 1969

Query:   324 LAIEPDKNVKAVGRNVMVPSVDINLM-DDFLEMERLAALPDTESRSFCVE----VGPASD 378
             L +E + N K   +N+   +    L  ++  E  R  AL +   R    E    +  A  
Sbjct:  1970 LDLELELN-KL--KNIADETQQSKLRAEEEAEKLRKLALEEENKRREAEEKLKKITAAEQ 2026

Query:   379 QPNADESSIKAELEVLIHRTAXXXXXXXNMRAEKSELEMDLKESQRRLETSQNXXXXXXX 438
             +      + + E+E L  +         +   E        KE+  +  T++        
Sbjct:  2027 EAARQRQAAQDEVERLKKKADEARKQKEDADKEAERQIYAAKEAAEKAITAEQQVQSVLV 2086

Query:   439 XXXXXXXXXX-----FANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANXXX 493
                            F    + A E E     A +  A  +    +AE + Q A      
Sbjct:  2087 QQKEDSLVQKKLKEEFEKAKRLAQEAEKAKEKAEKEAALLRQQAEDAERQRQTAEVEATN 2146

Query:   494 XXXXXXXXXXXXXXXXXXXRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSK 553
                                  RA +AE   L+ K I+ ++E+ + +  +E+ +    + +
Sbjct:  2147 QAKAQEEAERLRKDAELEAEKRA-QAEAAALKQKQIA-DEEMARHKKHAEQTLKQKSQVE 2204

Query:   554 DELSKVKQEIE 564
              EL+KVK  ++
Sbjct:  2205 QELAKVKLRLD 2215

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA92	FPP3_ARATH	No assigned EC number	0.4554	0.8670	0.8373	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.2659.1 hypothetical protein (548 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	594
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	1e-50
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-08
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	9e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	5e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	8e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	7e-05
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score =  186 bits (474), Expect = 1e-50
 Identities = 114/211 (54%), Positives = 147/211 (69%), Gaps = 23/211 (10%)

Query: 79  KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQ 138
           KE LVKQHAKVAEEAVSGWEKAE E + LKQQL+  + K  A E+R SHLDGALKEC+RQ
Sbjct: 1   KEALVKQHAKVAEEAVSGWEKAEAEAAALKQQLEDVTLKKLAAEDRASHLDGALKECMRQ 60

Query: 139 LRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD------- 191
           LRQ REEQEQ+IQ+  +++  EWE  K+ELE KL++LQK+L  A +E  A +        
Sbjct: 61  LRQVREEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSK 120

Query: 192 ----------------RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAET 235
                            DL ++LE+AEK+NS+LK E+  L KELE+R  ER++S ++A+ 
Sbjct: 121 MIMELSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKELEIRNEERNMSLQSADA 180

Query: 236 ASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           ASKQHLE +KK+AK+EAEC RL+ +VRK  P
Sbjct: 181 ASKQHLEGVKKIAKLEAECQRLRGLVRKRLP 211

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 68.5 bits (168), Expect = 5e-12
 Identities = 49/168 (29%), Positives = 90/168 (53%), Gaps = 4/168 (2%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
            ELEE+LE +R E SELE +++E Q+ L    N++   E + + L  +LA   +  + +E
Sbjct: 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322

Query: 459 VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            +++   +       +L    AE++ +L    +  ++ E E++  +++ E  ESRL  +E
Sbjct: 323 AQLEELESKLDELAEEL----AELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 519 AEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ 566
            ++ETLRSKV  LE ++       E   A  ++ +D   +++QEIE  
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 49/204 (24%), Positives = 104/204 (50%), Gaps = 5/204 (2%)

Query: 383 DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
               +K EL  L     +L+  LE +  E  ELE +L+E Q RLE  + +L+  E  L +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 443 LETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
           L+ ++    + +QA++ E++        AE +L  +E E+++      + ++  E+E++ 
Sbjct: 777 LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL----EQRRERLEQEIEE 832

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
            + + E  E +L  +E E+E L  ++  L++E+E+  A  EE     ++ ++E  ++++E
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 563 I-ELQHEVKLQYLAGSNQELKINQ 585
           + EL+ E+            ++ +
Sbjct: 893 LRELESELAELKEEIEKLRERLEE 916

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.8 bits (140), Expect = 1e-08
 Identities = 44/186 (23%), Positives = 90/186 (48%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
             +   ++ EL  L     EL+EELE    E  EL+ +L+E +  LE  Q +L E + ++
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
           EELE +++   +  + +E E++         + K+  ++ E++ +  L  + +Q   E  
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357

Query: 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560
           ++ +  +E   + L  +E   E LR ++  LE E+ + R   EE     +  ++ L ++ 
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 561 QEIELQ 566
           + +E  
Sbjct: 418 ERLEDL 423

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.4 bits (139), Expect = 2e-08
 Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 3/178 (1%)

Query: 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
            + E   L+     LE + E +  + + LE +L++    +   + +L+E E  LEEL  +
Sbjct: 221 REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK 280

Query: 447 LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSK 506
           +       +  ++ +K  I       + L    AE + +L  A +     E E+    ++
Sbjct: 281 I---KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            E  E  +       + L  +   L++E+E  RA  EE    F +++DEL   ++++E
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 56.6 bits (137), Expect = 3e-08
 Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 7/205 (3%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
            A    ++ EL+ L +    LE+ LE +R +  ELE  L+E +R L   + +L++ + +L
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
           EELE +L    +  + ++  ++         E  L    A++K ++    + +QA +EE+
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEAL----AKLKEEIEELEEKRQALQEEL 795

Query: 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE---KERALSEENIANFQKSKDELS 557
           +  + + E AE RL A+E E+E+L  +   LE E+E   +E    EE +   ++  +EL 
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 558 KVKQEIELQHEVKLQYLAGSNQELK 582
           K  +E++ + E           ELK
Sbjct: 856 KELEELKEELEELEAEKEELEDELK 880

Length = 1163

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 55.0 bits (132), Expect = 9e-08
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 39/183 (21%)

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           E  I +  EV         EELE +++EK  L+ +L + +  LE S+N+L+E E KLEE 
Sbjct: 575 EKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEE- 633

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
                                                 +K++L  + +S   AE ++K  
Sbjct: 634 --------------------------------------LKSELDASQESNSLAETQLKCM 655

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
               E+ E R + +EAE ++L+ K+ SLEDE+EKER   +E IA  ++ ++++ + +QE 
Sbjct: 656 VESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEE 715

Query: 564 ELQ 566
            +Q
Sbjct: 716 NMQ 718

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 14/202 (6%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
            ++   ++ ELE L     EL+EE+E +  E S L   L+E +  LE  + +L+E + K+
Sbjct: 273 KSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI 332

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT--------------QL 486
           E L+ +L       + +E  +     A+   E KLS +  E++               +L
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392

Query: 487 ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546
           A      +  + E++S + + E    RL  ++ E++ L +++  L+ E+E+     EE  
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 547 ANFQKSKDELSKVKQEIELQHE 568
              ++ +D L ++++E+    E
Sbjct: 453 EQLEELRDRLKELERELAELQE 474

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.9 bits (130), Expect = 2e-07
 Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 5/187 (2%)

Query: 381  NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
                  ++ E+E L     ELEE+L+ +  E  ELE +L+E +  LE  + + +E E +L
Sbjct: 820  EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879

Query: 441  EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
            +ELE +     +  + +E E+            +L  +EA+++       + ++  EEE 
Sbjct: 880  KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939

Query: 501  KSAKSKKEAAESRLRAVEAEMETLR---SKVISLEDEVEKERALSEENIANFQKSKDELS 557
            +     +   E  +  +E E+E L     + I   +EVE+     +    + +++K++L 
Sbjct: 940  EDTLETE--LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 558  KVKQEIE 564
            +V +E++
Sbjct: 998  EVIEELD 1004

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 45/186 (24%), Positives = 91/186 (48%)

Query: 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
             +K+ELE L     EL+EEL  ++ E  ELE ++   + RLE  +N+L+E E +LEEL+
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329

Query: 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
            ++    +  +  E  ++         E     +E ++   L    +  +A  EE+   +
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
           ++     + L  ++ E+E+L  ++  L + +E  +   +E  A  ++ + EL ++ +E+E
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 565 LQHEVK 570
              E  
Sbjct: 450 ELEEQL 455

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 1e-06
 Identities = 41/215 (19%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKA---ELEVLIHRTAELEEELENMRAEK 412
           +++  L + E      ++G    +  + E SI     ELE    R A+LE E++ + AE 
Sbjct: 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

Query: 413 SELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAE 472
            ELE +++E ++R +    +  E + +LE+L  +L   +K       E+K         +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 473 SKLSVVEAEMKTQLALANKSKQA---AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI 529
            +++ ++ E+        +  +        +   ++K    E        E++    K+ 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 530 SLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            L  ++ K      +    + + + ELSK+++E+ 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 8/186 (4%)

Query: 377 SDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA 436
            D+   + + ++ +LE L      LE ELE + AE  ELE  L+E + +LET ++++ + 
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391

Query: 437 ELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE--------AEMKTQLAL 488
           EL++  L  ++       + +E   +           KL   E         E++ +L  
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

Query: 489 ANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN 548
             +  +  EE ++  + + E AE  L A E E+  L++++ SLE   E     SE   A 
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

Query: 549 FQKSKD 554
            +    
Sbjct: 512 LKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 44/204 (21%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           ++  E+  L  +   L E L N+  +  ELE  L+E + +L+    +L E E KLEEL+ 
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 446 Q---LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
           +   L    +  +A   E+++ +         L    A+++ Q+A  N   +  E  ++ 
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLE-DEVEKERALSEENIANFQKSKDELSKVKQ 561
            + ++E  +  +  +  ++E    K +  E +E+E+E    +E +   +++ +EL +  +
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 562 EIELQHEVKLQYLAGSNQELKINQ 585
           E E   +   + LA     L   +
Sbjct: 472 EAEQALDAAERELAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 21/211 (9%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441
              + ++  L  L     ELEEELE +R E  EL        R++   +  L   E ++E
Sbjct: 691 EKIAELEKALAELRKELEELEEELEQLRKELEELS-------RQISALRKDLARLEAEVE 743

Query: 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVK 501
           +LE ++A  +K    +E E++        AE +L+  EAE++   A   +     +EE+K
Sbjct: 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ----LKEELK 799

Query: 502 SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV----------EKERALSEENIANFQK 551
           + +   +   + L  +  E   LR ++ SLE  +          E++     E+I +   
Sbjct: 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859

Query: 552 SKDELSKVKQEIELQHEVKLQYLAGSNQELK 582
             +EL ++ +E+E + E  L   A   + L 
Sbjct: 860 EIEELEELIEELESELEALLNERASLEEALA 890

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 44/186 (23%), Positives = 92/186 (49%), Gaps = 7/186 (3%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
            ELEE++E +  + +ELE  L E ++ LE  + +L++   +LEEL  Q++   K    +E
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 459 VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            E++           +L+ +EAE++       +    AEEE+  A+++ E  E+++  ++
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEE----AEEELAEAEAEIEELEAQIEQLK 795

Query: 519 AEMETLRSKVISLEDEV---EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLA 575
            E++ LR  +  L  E+    +E A   E + + ++      +  +++E Q E   + + 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 576 GSNQEL 581
               E+
Sbjct: 856 SLAAEI 861

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 42/182 (23%), Positives = 94/182 (51%), Gaps = 3/182 (1%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           + K EL+ L    AELE +LE +  E   L+ +L+  +  LE  + QL+E E +LEEL+ 
Sbjct: 664 AQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKR 723

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT---QLALANKSKQAAEEEVKS 502
           +LA   +  + ++  ++         E +L  ++  ++    +L    ++    +EE++ 
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
            + K++A +  L  +E E+E    ++ +LE E+E      E      ++ ++E+ +++++
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 563 IE 564
           ++
Sbjct: 844 LD 845

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRL----ETSQNQLKEAE 437
             + +I+ +L  L     +L EE+  +     E+E  L+E  +++    E  Q ++KE  
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE-- 294

Query: 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQ 494
            K+ ELE ++A   +S    E E++ A       E+++  + AE+   + ++    K + 
Sbjct: 295 -KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353

Query: 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554
              EE    K + E   + L  V+ E    R ++    +++EK +    E      + ++
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 555 ELSKVKQEIE 564
           EL ++ +E+ 
Sbjct: 414 ELQRLSEELA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 3e-06
 Identities = 41/201 (20%), Positives = 95/201 (47%), Gaps = 4/201 (1%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           S  AEL+ L  R   L+ EL ++++E   +E  L E  + L  +  ++ E E ++E+LE 
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM-KTQLALANKSKQAAEEEVKSAK 504
           +     +  + +E ++ +        +S+L  +EA + + +  L    +   + E + + 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEK---ERALSEENIANFQKSKDELSKVKQ 561
           S+    ++ L  +E E+  + +++  +E ++ +   E+   E+ I   Q+ + +L +  +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 562 EIELQHEVKLQYLAGSNQELK 582
            IE + E          +EL+
Sbjct: 851 SIEKEIENLNGKKEELEEELE 871

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 45/189 (23%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 378 DQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437
           ++   +   ++ ELE L  + + L ++L  + AE  +LE  + +  + L   + +++E E
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAE 497
            +LEE E +LA A    + +E +++            L  + AE    L L N+      
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE----LTLLNEEAANLR 823

Query: 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS 557
           E ++S + +  A E RL  +E ++E L   + SL  E+E+   L EE  +  +   +E +
Sbjct: 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883

Query: 558 KVKQEIELQ 566
            +++ + L 
Sbjct: 884 SLEEALALL 892

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 49.2 bits (117), Expect = 5e-06
 Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 310 NECEPNSSTSWASALAIEPD----KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPD-- 363
           N+ E + S SWASAL  E +    +            S ++ LMDDFLEME+LA LP   
Sbjct: 339 NDDEGSCSESWASALISELEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPES 398

Query: 364 -----TESRSFCVEVGPASDQPNADES--------------SIKAELEVLIHRTAELEEE 404
                  S   C +   A   P   E                   +L +  H  +E+ E 
Sbjct: 399 SADGSKVSSPKCSDSSVALTGPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEI 458

Query: 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
           LE++ AE   LE          E +       E       +Q
Sbjct: 459 LEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIERSQ 500

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 49/200 (24%), Positives = 99/200 (49%), Gaps = 7/200 (3%)

Query: 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
           + EL +L+ +  EL +ELE +  E S LE +L+E Q  LE ++ +++E + +LEEL  +L
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283

Query: 448 AFANKSKQAV-----EVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
               +    +     E+E + ++    + E +  + E E +  L    +  +A +EE++ 
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEER--LEELKEKIEALKEELEE 341

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
            ++  E  E  L  +E   E L  K+ +L +E+E+      E +A  +    E+    +E
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 563 IELQHEVKLQYLAGSNQELK 582
           ++ + E   + L   ++ L+
Sbjct: 402 LKREIESLEERLERLSERLE 421

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 48.9 bits (117), Expect = 8e-06
 Identities = 47/194 (24%), Positives = 96/194 (49%), Gaps = 16/194 (8%)

Query: 395 IHRTAELEEELENMRAEKSELE-----MDLKESQRRLETSQNQLKEAELKLEELETQLA- 448
           + R AE  E  + ++AE  ELE     + L+E +  LE  Q +LKEAE +LEEL  +L  
Sbjct: 205 LERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE 264

Query: 449 ----FANKSKQAVEVEMKAAIAARGVAE-----SKLSVVEAEMKTQLALANKSKQAAEEE 499
                     +  E+E +     + +       S+L   +  ++ +LA   +  +  E +
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 500 VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
           ++  +SK +     L  +E ++E L+ ++ SLE E+E+  A  EE  +  ++ +++L  +
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 560 KQEI-ELQHEVKLQ 572
           + ++ +L+ ++   
Sbjct: 385 RSKVAQLELQIASL 398

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 8e-06
 Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 15/184 (8%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
             +   ++ + + L     ELEEELE        LE +L+  ++R E  + +++E E ++
Sbjct: 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837

Query: 441 EELETQLAFANKSKQAVE----------VEMKAAIAARGVAESKLSVVEAEMKTQLALAN 490
           EELE +L    +  + +E           E++A          +L   + E++ +L    
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897

Query: 491 KSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKV-----ISLEDEVEKERALSEEN 545
                 +EE++  + + E  E++L  +E E+  L  ++      +LE E+E+E    EE 
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957

Query: 546 IANF 549
           I   
Sbjct: 958 IEAL 961

Length = 1163

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 26/257 (10%)

Query: 9   RRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEK 68
              +   AA G   S  S S+     +   +     S A    P      N+S +    K
Sbjct: 313 TTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 69  LSAALLNVSAKEDLVKQHAKVAEEAV-------SGWEKAENELSTLKQQLKAASQKNSAL 121
            S+   +       +  +  V            S  E+ E ++  L+ +L+ A Q  S L
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESEL 432

Query: 122 ENRVSHLD---GALKECVRQLRQAREEQEQRIQETVS-----KQNLEWESK--KSE---- 167
            N++S L     +LK  + QL++  +  + ++   VS     KQ+++   K  KSE    
Sbjct: 433 RNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSR 492

Query: 168 --LESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSA---LKLELLSLVKELELR 222
              E +L + +K+ +  +  AA +A +   S+ E AE    A   L++E+  L  +L+L+
Sbjct: 493 VNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLK 552

Query: 223 IVERDLSTKAAETASKQ 239
             E  +  K A+   K 
Sbjct: 553 EEECRMLEKEAQELRKY 569

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
           + +  EL  L     ELEE LE    E +E E +++E + ++E  + +LK     L+EL 
Sbjct: 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809

Query: 445 TQL----AFANKSKQAVEVEMKAAIAARGVAE------SKLSVVEAEMKTQLALANKSKQ 494
            +L      A   ++ +E   +   A     E       +LS     +  ++    +  +
Sbjct: 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

Query: 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554
             E E+++  +++ + E  L  + +E+E L  ++  LE +  + R   EE      + + 
Sbjct: 870 ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929

Query: 555 ELSKVKQEIE 564
            L  ++  I+
Sbjct: 930 RLEGLEVRID 939

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
                 +K EL  L      +E  L+ +  E S+    + E ++ +E  + + ++ + +L
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM--------KTQLALANKS 492
           EELE  L+   +  + V+ E+K   A     E  L  +E  +         +++      
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
               EEEV   +++    E +L  +  E E L  ++     E++++R   +E I + +K 
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRIDLKEQIKSIEKE 855

Query: 553 KDELSKVKQEIELQ---HEVKLQYLAGSNQELK 582
            + L+  K+E+E +    E  L+ L     +LK
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLK 888

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 43/209 (20%), Positives = 98/209 (46%), Gaps = 7/209 (3%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441
            D SS++ E+E +     ELE  +E +  +  +LE  L + + RL  S +++ E + +L 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELS 801

Query: 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVK 501
           +LE +++      + +E ++      +   E ++     E++ Q     +  ++ E+E++
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRIDLKEQIKSIEKEIE 857

Query: 502 SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561
           +   KKE  E  L  +EA +  L S++  L+ E ++  A   E     ++ + ++ K ++
Sbjct: 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917

Query: 562 EIELQHEVKLQYLAGSNQELKINQVSGLS 590
            +    + KL+ L     E++  +     
Sbjct: 918 RLSEL-KAKLEALEEELSEIEDPKGEDEE 945

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 48/209 (22%), Positives = 104/209 (49%), Gaps = 7/209 (3%)

Query: 376 ASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435
             ++ +   S+++ +L  L     +LEE +  +  E +ELE +++E + RLE ++ +L E
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779

Query: 436 AELKLEELETQLAFANKSKQAVE---VEMKAAIAARGVAESKLSVVEAEMKTQLALANKS 492
           AE ++EELE Q+    +  +A+     E++A +       + L      ++ ++A   + 
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
            +  EE+++      E+  + +  +E  +E L S++    + +  ERA  EE +A  +  
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESEL----EALLNERASLEEALALLRSE 895

Query: 553 KDELSKVKQEIELQHEVKLQYLAGSNQEL 581
            +ELS+  +E+E +     + L    ++L
Sbjct: 896 LEELSEELRELESKRSELRRELEELREKL 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 37/174 (21%), Positives = 82/174 (47%), Gaps = 7/174 (4%)

Query: 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
           +   + L    AEL+EELE++RAE  E++ +  E++  L+  + +L++ + ++ EL+ +L
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKK 507
               +  Q +  E+    AA    E+K++ +E E +          +  E +++   +  
Sbjct: 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED----KALEIKKQEWKLEQLAADL 464

Query: 508 EAAESRLRAVEAEMETLRSKVISLE---DEVEKERALSEENIANFQKSKDELSK 558
              E  L  ++ E + +  ++  L+    E E +   SEE +   +  ++ L  
Sbjct: 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           +++ EL  L    AE+  ELE ++ E   LE  L+    RLE  + +LKE E +LEEL+T
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
           +L   N+  + +E +++                  E++ +LA   +  Q  E+E+ S ++
Sbjct: 440 ELEELNEELEELEEQLEELRDRL-----------KELERELAELQEELQRLEKELSSLEA 488

Query: 506 KKEAAESRLRAVEAEMETLRSKVISLE 532
           + +  E+  RA +     L +    L 
Sbjct: 489 RLDRLEAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.4 bits (108), Expect = 7e-05
 Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 11/189 (5%)

Query: 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449
           E E L     +LEE  E +R E +ELE +L+E++  +E  + +++E E ++EEL  +   
Sbjct: 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402

Query: 450 ANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEE--------EVK 501
           A       E  ++     R     + + +EA ++T      +++   E          V+
Sbjct: 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVE 462

Query: 502 SAKSKKEAAESRLRA--VEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
            +   +   E R R   +EAE+E L  +V  +E+ +E+   L E      ++ ++    +
Sbjct: 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE-DRIERLEERREDL 521

Query: 560 KQEIELQHE 568
           ++ I  + E
Sbjct: 522 EELIAERRE 530

Length = 880

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 23/180 (12%)

Query: 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
             +  E + L  R  E+ + L+  +AE   L   L+  +  LE  +NQ+ + E +++E+ 
Sbjct: 13  QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR 72

Query: 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
            ++                       AE KLS V+ E   +L   N   Q A+E + S +
Sbjct: 73  ERIK---------------------RAEEKLSAVKDE--RELRALNIEIQIAKERINSLE 109

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            +       +  +E E+E L+ ++  LE  + +  A  EE +A  ++   ELS  ++E++
Sbjct: 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169

Length = 239

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 384  ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
              SI+ E+E L  +  ELEEELE + A   +LE  L + ++  +  + QL+E E K+EEL
Sbjct: 849  IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 444  ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
            E Q+       +     +    A     E +LS +E                 +EE+   
Sbjct: 909  EAQI-------EKKRKRLSELKAKLEALEEELSEIEDPKG------------EDEEIPEE 949

Query: 504  KSKKEAAESRLRAVEAEMETLRS---KVISLEDEVEKERALSEENIANFQKSKDELSKVK 560
            +   E  ++ L+ VE E+  L       I   +EV K     +E  A  ++ +  + +  
Sbjct: 950  ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009

Query: 561  QEIE 564
            +E E
Sbjct: 1010 EEYE 1013

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 40/193 (20%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 30  LSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKV 89
           L ER ++ +    +      +     + + + +  L EKL      + + E  +++    
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 90  AEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQR 149
            EE  S  E+ E +L TL+ ++     + ++L N +  L+  L+    +  + ++E E+ 
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

Query: 150 IQETVSKQNLEWESKKSELESKLVDLQKKLQT--AKSEAAASADRDLCSKLEAAEKQNSA 207
           +++    +  E +++  ELE +L +LQ++L+      E       +    L+AAE++ + 
Sbjct: 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

Query: 208 LKLELLSLVKELE 220
           L+  L SL +  E
Sbjct: 487 LQARLDSLERLQE 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 42.7 bits (101), Expect = 4e-04
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 23/187 (12%)

Query: 353 LEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHR-TAELEEELENMRAE 411
            E+ RL A  D++          A + P+   S+    +  LI    +  E     +RA+
Sbjct: 95  AEVARLRAEADSQ---------AAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQ 145

Query: 412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK--SKQAV--------EVEM 461
              +   +K+ +  L   Q QL+    +LE +  +L    K   K  V        E E 
Sbjct: 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERER 205

Query: 462 KAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEM 521
             A    G  E++L V++ +      L  + +Q  +   +    +   A++RL  +   +
Sbjct: 206 AEAQGELGRLEAELEVLKRQ---IDELQLERQQIEQTFREEVLEELTEAQARLAELRERL 262

Query: 522 ETLRSKV 528
              R ++
Sbjct: 263 NKARDRL 269

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 33/186 (17%), Positives = 80/186 (43%), Gaps = 11/186 (5%)

Query: 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
            +AE+E L  +  +L+EEL+ +R    EL  +L          + +L+  E ++   E +
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

Query: 447 LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSK 506
           L    +  + +  ++++  A       +L  +  E++++L      + + EE +   +S 
Sbjct: 840 LEDLEEQIEELSEDIESLAAEI----EELEELIEELESELEALLNERASLEEALALLRS- 894

Query: 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ 566
                  L  +  E+  L SK   L  E+E+ R    +     +  +  +  +++ +  +
Sbjct: 895 ------ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

Query: 567 HEVKLQ 572
           + + L+
Sbjct: 949 YSLTLE 954

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 7/159 (4%)

Query: 410 AEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469
           A  S+ +   +E++R+LE ++  L+  E  LEELE QL    +  +  E   +   A   
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELR 223

Query: 470 VAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI 529
             E  L + +      L    K  +  EEE+   + + E  +  L   E E+E L+S++ 
Sbjct: 224 ELELALLLAK------LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 530 SLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHE 568
            L +E+E+ +    E     ++ + E+S +++ +E    
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELEN 316

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 26/174 (14%)

Query: 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS 453
            I  +     EL+ +R     L+ +L   Q  L   +N+L E   +L +   ++      
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI--GEIE 722

Query: 454 KQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR 513
           K+  ++E +       + E                        EE++ S + + E  +S 
Sbjct: 723 KEIEQLEQEEEKLKERLEEL-----------------------EEDLSSLEQEIENVKSE 759

Query: 514 LRAVEAEMETLRSKVISLEDEVEK-ERALSEENIANFQKSKDELSKVKQEIELQ 566
           L+ +EA +E L   +  LE+ +   E  LS   I   Q    +L +    IE +
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEAR 813

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 3/153 (1%)

Query: 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
           ++AELE +    AE  +EL++ R +  +L+ ++ E +R L+  Q +L+    +L +L   
Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428

Query: 447 LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT--QLALANKSKQAA-EEEVKSA 503
           +A        +E E +         E KL  + A++    Q     K +    E+E+   
Sbjct: 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536
           + +   AE++ RA E  +   R+    L+  ++
Sbjct: 489 QRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV 477
             K +   LE  +  ++E E K+EELE ++A   K+   +  E++           +L  
Sbjct: 665 SAKTNSSILERRRE-IEELEEKIEELEEKIAELEKALAELRKELEELEEEL----EQLRK 719

Query: 478 VEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537
              E+  Q++   K     E EV+  + +       L  +EAE+E L  ++   E+E+ +
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779

Query: 538 ERALSEENIANFQKSKDELSKVKQEI-ELQHEVKLQYLAGSNQELKINQ 585
             A  EE  A  ++ K+EL  +++ + EL+ E+ L     +N   ++  
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441
                ++  L  L     ELEE+L  +  E  EL   L+E    LE    +L E   +LE
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE---AELAEIRNELE 400

Query: 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQAAEE 498
           EL+ ++    +  + +   ++         E++L  ++ E+     +L    +  +   +
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543
            +K  + +    +  L+ +E E+ +L +++  LE E    + +  
Sbjct: 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 4/186 (2%)

Query: 383 DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
               ++ ELE  + R  +LEE ++ ++ E +EL   L+E Q  LE  + +L+E E +LEE
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 443 LETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
           LE ++    +    +E   +  IA    A  K  V   E+  +           E E   
Sbjct: 429 LEEEIKKLEEQINQLE-SKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
            +  +E  E+ LR    E+E L  ++  LE+E+ +   L E      ++  ++L  + +E
Sbjct: 488 EELSREKEEAELR---EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544

Query: 563 IELQHE 568
           +E   E
Sbjct: 545 LEELKE 550

Length = 908

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 98  EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157
            + + EL+ L+++L    ++ + L+     L   L     +L + ++E   RI++  S  
Sbjct: 69  PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL-ARIKQL-SAN 126

Query: 158 NLEWESKKSELESKLVDLQKKLQTAKSEAAASADR 192
            +E + +  EL  +L +L+++ +  ++E     + 
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQEN 161

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 60  DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNS 119
             ++ L E+L      +   E+ +++     +E     E+   E+S L+++++   ++  
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 120 ALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKL 179
           AL N +S L+   +    +L     + E+     +  Q  E ESK  EL  +L +L++KL
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEE-----LEAQLEELESKLDELAEELAELEEKL 346

Query: 180 QTAKSEAAASADR--DLCSKLEAAEKQNSALKLELLSLVKEL 219
           +  K E  +      +L ++LE  E +   L+ +L +L  ++
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
            +K EL+ L      L EEL ++ A  + +E  + E +   E    ++K+ E KLE+L  
Sbjct: 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
            L+   +    ++ E           E +LS    +++ +LA A    +A+EE V+  ++
Sbjct: 463 DLSKYEQELYDLKEEYDR-------VEKELS----KLQRELAEAEAQARASEERVRGGRA 511

Query: 506 KKEAAESRLRAV 517
            +E  ++ ++ V
Sbjct: 512 VEEVLKASIQGV 523

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 20/222 (9%)

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEM-----------------DLKESQRRL 426
           E  ++ E+E L  R AELEEE E +   K+ L                   +L+     L
Sbjct: 227 EEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEEL 286

Query: 427 ETSQNQLKEAELKLEELETQLAF---ANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483
           E    +L+E E ++EELE +L       +  + +  ++K+        E KL  +E+E++
Sbjct: 287 EEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346

Query: 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543
                 N+  +  EE +K  + + E  E  L      ++ L   +  L++E+ +  A  E
Sbjct: 347 ELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406

Query: 544 ENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
           E     ++ + EL ++++E+E   E   +     NQ      
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKEL 448

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.5 bits (94), Expect = 0.003
 Identities = 103/474 (21%), Positives = 180/474 (37%), Gaps = 25/474 (5%)

Query: 109  QQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL 168
             +LK A +K  A E + +       E  ++  +A++  E + +   +K+  +   KK+E 
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 169  ESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDL 228
              K  +  K    A ++ A +A+     K EAAEK+    K +  +  K+ E +    + 
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396

Query: 229  STKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQS 288
              KA E   K         AK +A+  + KA  +K +   + K+              ++
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456

Query: 289  DNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINL 348
               E     + +  K +D    + E       A   A E  K      +         + 
Sbjct: 1457 KKAEE-AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA-KKAAEAKKKADE 1514

Query: 349  MDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAEL----EVLIHRTAELEEE 404
                 E ++       E      E   A ++  ADE     EL    E      A+  EE
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574

Query: 405  LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL---ETQLAFANKSKQAVEVEM 461
             +NM   K+E E    E  R  E  +   +E ++K EE    E     A + K+A E + 
Sbjct: 1575 DKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633

Query: 462  KAAIAARGVAES--KLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEA 519
            K     +  AE   K   ++   +     A +  + AEE+ K A+  K+A E   +A EA
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 520  ---------EMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
                     + E L+ K    + + E+ +   EEN    +++K E  + K++ E
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747

Length = 2084

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 387  IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
            ++ ++E L      L  E+E +     ELE +L+       + +  L     +LEEL  +
Sbjct: 843  LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

Query: 447  LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM-KTQLALANKSKQAAEEEVKSAKS 505
            L       + +E +             KL+ +E  +   ++ + N  ++ +EE   +   
Sbjct: 903  L-------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL-- 953

Query: 506  KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
              E AE+    +E + E  R ++  LE+++++   ++   I  +++ K+    +  + E
Sbjct: 954  --EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 45/210 (21%), Positives = 92/210 (43%), Gaps = 24/210 (11%)

Query: 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE------------------L 438
           R  E E +LE        LE  L+E +++LE  + Q ++AE                   
Sbjct: 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLA 232

Query: 439 KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA---EMKTQLALANKSKQA 495
           KL+EL  +L    +    +E E++        AE ++  +++   E++ +L    +    
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN---IANFQKS 552
            +EE++  + +      RL  +E E+E L  ++  L++++E  +   EE    +   ++ 
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 553 KDELSKVKQEIELQHEVKLQYLAGSNQELK 582
             EL + K+E+E +    L+ L    + L+
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALR 382

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 3/181 (1%)

Query: 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
           + E + ++    E  EELE + AE  +L   + E++R  E    ++++   +LEELE + 
Sbjct: 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER 295

Query: 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAK 504
                     + + +A  A R   E +   +     E +      N+  ++  E+    +
Sbjct: 296 DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            + E        +E+E+E  R  V    +E+E+     EE    F  +  +L   +  +E
Sbjct: 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLE 415

Query: 565 L 565
            
Sbjct: 416 E 416

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	594
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	100.0
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.24
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.22
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.14
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.8
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.74
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.73
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	97.46
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.15
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.15
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.12
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.88
PRK11637	428	AmiB activator; Provisional	96.68
PRK11637	428	AmiB activator; Provisional	96.49
PRK02224	880	chromosome segregation protein; Provisional	96.44
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.35
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.33
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.3
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.2
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.18
PRK09039	343	hypothetical protein; Validated	96.16
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	96.02
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.89
PRK02224	880	chromosome segregation protein; Provisional	95.59
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.5
KOG1003	205	consensus Actin filament-coating protein tropomyos	95.4
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.25
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.21
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	95.12
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	95.1
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.48
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.47
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.41
KOG0996	1293	consensus Structural maintenance of chromosome pro	94.35
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.27
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.09
PHA02562	562	46 endonuclease subunit; Provisional	94.03
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.97
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.95
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	93.81
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.78
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.74
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	93.69
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.61
KOG0963	629	consensus Transcription factor/CCAAT displacement	93.44
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.43
PRK03918	880	chromosome segregation protein; Provisional	93.17
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.15
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	92.97
PRK03918	880	chromosome segregation protein; Provisional	92.5
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	92.47
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	92.17
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	91.65
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	91.3
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.61
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	90.39
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	90.31
KOG0971	1243	consensus Microtubule-associated protein dynactin	90.3
KOG0933	1174	consensus Structural maintenance of chromosome pro	89.8
PRK04863	1486	mukB cell division protein MukB; Provisional	89.74
KOG0971	1243	consensus Microtubule-associated protein dynactin	89.0
PRK09039	343	hypothetical protein; Validated	88.96
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	88.88
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	88.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.63
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.46
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	88.24
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	87.63
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.54
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.41
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	87.35
PRK04863	1486	mukB cell division protein MukB; Provisional	87.15
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	87.13
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	86.93
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	86.77
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	86.69
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.32
PRK04778	569	septation ring formation regulator EzrA; Provision	86.15
KOG0964	1200	consensus Structural maintenance of chromosome pro	85.6
KOG0964	1200	consensus Structural maintenance of chromosome pro	85.58
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	85.36
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.05
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	84.53
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	84.35
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	83.21
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	82.67
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.5
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	82.27
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	82.26
KOG1003	205	consensus Actin filament-coating protein tropomyos	81.91
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	81.91
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.75
PRK04778	569	septation ring formation regulator EzrA; Provision	81.58
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	81.44
COG4942	420	Membrane-bound metallopeptidase [Cell division and	81.33
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	80.82
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	80.56

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=100.00  E-value=9.2e-115  Score=969.83  Aligned_cols=467  Identities=52%  Similarity=0.672  Sum_probs=400.9

Q ss_pred             chHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 007664           79 KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQN  158 (594)
Q Consensus        79 Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks  158 (594)
                      ||||||||+|||||||+||||||+||++||+|||+++++++++||||+||||||||||||||+|||||||+|||||+++|
T Consensus         1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s   80 (769)
T PF05911_consen    1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS   80 (769)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-----------------------HHHHHHHHHHHHhhhhhhHHHHHH
Q 007664          159 LEWESKKSELESKLVDLQKKLQTAKSEAAASAD-----------------------RDLCSKLEAAEKQNSALKLELLSL  215 (594)
Q Consensus       159 ~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~-----------------------~~L~~rLes~EKen~sLkyE~~~l  215 (594)
                      +||++++.+||.+|.++.++|..++++|+++.+                       .+|++||+++||||++|||||||+
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987654                       589999999999999999999999


Q ss_pred             HhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhcCCCCC------------------C---CCCC
Q 007664          216 VKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTE------------------N---KSFT  274 (594)
Q Consensus       216 ~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~lp~~d------------------~---rs~~  274 (594)
                      +|||+|||+|||||+||||+|||||||||||||||||||||||+||||+||||.                  +   |+.+
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~  240 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS  240 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999982                  1   2222


Q ss_pred             C-Ccccc---cCCCCCCC---chhhhhhccccccc-------------------------cc------------------
Q 007664          275 P-SSIYV---GSFTDSQS---DNGERLLGNETDNC-------------------------KI------------------  304 (594)
Q Consensus       275 ~-~s~~~---~s~~d~~s---d~~erl~~~E~e~~-------------------------kl------------------  304 (594)
                      + ++++.   .+++.++.   .+++||++||+||+                         ||                  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~  320 (769)
T PF05911_consen  241 RPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELS  320 (769)
T ss_pred             cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            2 22221   22222222   25999999999983                         11                  


Q ss_pred             ------------Cc-cccccCCCCCcchhhhhccCCCc--ccccccCCCC--CCCccccccchhHHHHHHhhcCCCCCCC
Q 007664          305 ------------SD-SEVNECEPNSSTSWASALAIEPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALPDTESR  367 (594)
Q Consensus       305 ------------s~-~~~~~~~~scs~SWAsALisEld--k~~k~~~~~~--~~~s~di~LMDDFlEMEkLA~l~~~~~~  367 (594)
                                  |. .+++||++|||||||||||||||  |++|+++++.  +.+++||+||||||||||||+||.++++
T Consensus       321 ~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~  400 (769)
T PF05911_consen  321 SSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSS  400 (769)
T ss_pred             cccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCC
Confidence                        12 23579999999999999999999  7788766654  6667899999999999999999976655


Q ss_pred             CccccCC-CCCCCCC-----------Cc----------------------------------------------------
Q 007664          368 SFCVEVG-PASDQPN-----------AD----------------------------------------------------  383 (594)
Q Consensus       368 ~~~~~~~-~~sd~~~-----------~~----------------------------------------------------  383 (594)
                      +++.... .+.+..+           ..                                                    
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~  480 (769)
T PF05911_consen  401 PSSCSSSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDS  480 (769)
T ss_pred             CCCCCCccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccccccc
Confidence            4443221 1111100           00                                                    


Q ss_pred             -c-----c----------------------------chHHH---------------------------------------
Q 007664          384 -E-----S----------------------------SIKAE---------------------------------------  390 (594)
Q Consensus       384 -~-----~----------------------------~l~~E---------------------------------------  390 (594)
                       .     .                            .|..+                                       
T Consensus       481 ~~~~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~  560 (769)
T PF05911_consen  481 EEYESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVS  560 (769)
T ss_pred             chhhhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence             0     0                            00000                                       


Q ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          391 -----------------------LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL  447 (594)
Q Consensus       391 -----------------------lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL  447 (594)
                                             .+........+++++++++++|.++++.|..|+.+++.++.+|+++++++.+||++ 
T Consensus       561 s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e-  639 (769)
T PF05911_consen  561 SMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE-  639 (769)
T ss_pred             HHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                                   11122255677889999999999999999999999999999999999999999999 


Q ss_pred             HHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664          448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK  527 (594)
Q Consensus       448 ~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~K  527 (594)
                                                            |.++++|+++++++|+|+...++.+++|+..+++|+..|+.|
T Consensus       640 --------------------------------------L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K  681 (769)
T PF05911_consen  640 --------------------------------------LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK  681 (769)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                                                  888999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhhhhcCccccchhhhcccccc
Q 007664          528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFM  592 (594)
Q Consensus       528 V~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~~e~~~~~~~~s~~elKiKQEkELa~~  592 (594)
                      |.+||.+|++||++|.++.+||++||++|+|++.      +...++.+  +.++|++||+|||+.
T Consensus       682 i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~------~~~~~~~~--~~~~k~kqe~EiaaA  738 (769)
T PF05911_consen  682 ISSLEEELEKERALSEELEAKCRELEEELERMKK------EESLQQLA--NEDKKIKQEKEIAAA  738 (769)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc------ccchhhcc--ccccccchHHHHHHH
Confidence            9999999999999999999999999999999984      34444434  999999999999874

The function of this family is unknown.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.24  E-value=0.032  Score=67.66  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             hhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhh-------hhhhhhhhhchhhHH
Q 007664           60 DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK-------NSALENRVSHLDGAL  132 (594)
Q Consensus        60 ~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~-------~~~~e~rv~hLD~AL  132 (594)
                      ..++.++.+|...-.+++.-...+..+..--.++-..++..+.++..+...+......       ...++..+.++..-+
T Consensus       232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  311 (1163)
T COG1196         232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL  311 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777778877777777777777777777777778888887777777777766222       223444555555555


Q ss_pred             HHHHHHH
Q 007664          133 KECVRQL  139 (594)
Q Consensus       133 KeCmrQL  139 (594)
                      +.+..++
T Consensus       312 ~~~~~~~  318 (1163)
T COG1196         312 EELENEL  318 (1163)
T ss_pred             HHHHHHH
Confidence            5554443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.22  E-value=0.026  Score=66.05  Aligned_cols=75  Identities=25%  Similarity=0.381  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM  461 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v  461 (594)
                      +..+++.+..++..++..+..+..+...++..+..++.++...+..+..++..+..++.++.........++.++
T Consensus       675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~  749 (1179)
T TIGR02168       675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI  749 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555444444444444444444444444444444444444444444333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.14  E-value=0.04  Score=64.96  Aligned_cols=52  Identities=29%  Similarity=0.418  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL  440 (594)
Q Consensus       389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL  440 (594)
                      .++..+..++..++..+..+..+...++..+..++..+......+..+...+
T Consensus       674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l  725 (1164)
T TIGR02169       674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI  725 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555554444444444444444433333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.80  E-value=0.0078  Score=60.63  Aligned_cols=57  Identities=32%  Similarity=0.517  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHh
Q 007664          494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS  557 (594)
Q Consensus       494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLs  557 (594)
                      ..++..+..+...+++++.+...++..+..|...|..|+.+|..++.       ++..+..+|-
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~-------~~~~~~~eld  228 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE-------KYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence            46777888889999999999999999999999999999999986654       4555555543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.74  E-value=0.0049  Score=62.05  Aligned_cols=35  Identities=34%  Similarity=0.601  Sum_probs=15.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLE  532 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE  532 (594)
                      ..|..+......+++++..++.++..+...+.+||
T Consensus       127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE  161 (237)
T PF00261_consen  127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLE  161 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence            33333444444444444444444444444444444

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.73  E-value=0.18  Score=58.85  Aligned_cols=166  Identities=24%  Similarity=0.300  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------
Q 007664          395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM-------------  461 (594)
Q Consensus       395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v-------------  461 (594)
                      ...|..|+..|..++.||..|-..|.++|.+|+.++..|.+-..++..|-.+++....-....+...             
T Consensus       264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d  343 (717)
T PF09730_consen  264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED  343 (717)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence            4589999999999999999999999999999999999999999999999999998766211111110             


Q ss_pred             -----------HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664          462 -----------KAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS  530 (594)
Q Consensus       462 -----------e~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s  530 (594)
                                 +-.+.+...+...+.-+..|++.+...-+.....+..+.....++...+..++..++...+.-..+|..
T Consensus       344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~  423 (717)
T PF09730_consen  344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE  423 (717)
T ss_pred             cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence                       111122222223333344455544444444444555566666777778888888888877777888999


Q ss_pred             hHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664          531 LEDEVEKERALSEENIANFQKSKDELSKVK  560 (594)
Q Consensus       531 LE~EIekERalS~E~~aKC~~LEeeLsr~k  560 (594)
                      ||.++..=+.+..+....+.--.++|.-..
T Consensus       424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfS  453 (717)
T PF09730_consen  424 LEKELRALSKLAGESQGSLNSAQDELVTFS  453 (717)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999998888888888888876

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=97.46  E-value=0.43  Score=56.28  Aligned_cols=153  Identities=27%  Similarity=0.339  Sum_probs=102.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~  465 (594)
                      .+..+++.+......|+..+.+.......+...|.+....++..+.+|.-+..--..+..||.....++..++.++..++
T Consensus       593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e  672 (769)
T PF05911_consen  593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE  672 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            45667788887777777766666666666666677777777777777776666666778888889999999999999999


Q ss_pred             HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH
Q 007664          466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN  545 (594)
Q Consensus       466 ~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~  545 (594)
                      ++..++-.+++.++.||.+......+..           ++...++-+|.....+.......  .=+-.+.+|+.++.-.
T Consensus       673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~-----------~kc~~Le~el~r~~~~~~~~~~~--~~~~k~kqe~EiaaAA  739 (769)
T PF05911_consen  673 AEAEELQSKISSLEEELEKERALSEELE-----------AKCRELEEELERMKKEESLQQLA--NEDKKIKQEKEIAAAA  739 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhh-----------hHHHHHHHHHHhhhcccchhhcc--ccccccchHHHHHHHH
Confidence            9999999999999999886655544332           33444555555554443222111  2333455555555433


Q ss_pred             --HHHhHH
Q 007664          546 --IANFQK  551 (594)
Q Consensus       546 --~aKC~~  551 (594)
                        .|-|++
T Consensus       740 ~KLAECQe  747 (769)
T PF05911_consen  740 EKLAECQE  747 (769)
T ss_pred             HHHHHHHH
Confidence              666664

The function of this family is unknown.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.15  E-value=0.085  Score=50.04  Aligned_cols=135  Identities=22%  Similarity=0.379  Sum_probs=96.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~  465 (594)
                      ++++|.+.++.+...++.++..++.+...++..+.-.+..+.....+|..++..+.+++..++........++       
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-------   76 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-------   76 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-------
Confidence            5788999999999999999999998888888888777777777777777777777776666555444332221       


Q ss_pred             HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH
Q 007664          466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN  545 (594)
Q Consensus       466 ~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~  545 (594)
                          .|.++|.++                  +++|+.+....+....+|..+..-+..+..+|..||.+..       ..
T Consensus        77 ----~l~rriq~L------------------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~-------~~  127 (143)
T PF12718_consen   77 ----QLNRRIQLL------------------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD-------QW  127 (143)
T ss_pred             ----HHHhhHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH-------HH
Confidence                334444444                  4555566666777778888888888888888888888744       66


Q ss_pred             HHHhHHHHHHH
Q 007664          546 IANFQKSKDEL  556 (594)
Q Consensus       546 ~aKC~~LEeeL  556 (594)
                      ..||..|+.++
T Consensus       128 E~k~eel~~k~  138 (143)
T PF12718_consen  128 EEKYEELEEKY  138 (143)
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.15  E-value=0.11  Score=65.97  Aligned_cols=180  Identities=22%  Similarity=0.288  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA  466 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~  466 (594)
                      ....+..+...+..+++.+.++-.++..+|-++..++..+......+..+......|..+|+........-+..-...+.
T Consensus       962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek 1041 (1930)
T KOG0161|consen  962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK 1041 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666677777777777777777777777777776666666666555555555555544433332222222223333


Q ss_pred             hhhhhhhhhhhHHHHHHH---HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcH
Q 007664          467 ARGVAESKLSVVEAEMKT---QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE  543 (594)
Q Consensus       467 ~~~~lEskl~~~eaEik~---~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~  543 (594)
                      ....+++.+..++..|..   .-.--.....-.+.++..+.++.......+..++..+..|...|.-|+++++.||+.=.
T Consensus      1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455544333332221   11111112223455666667777777777777888888888999999999999999999


Q ss_pred             HHHHHhHHHHHHHhhhhHHHHHH
Q 007664          544 ENIANFQKSKDELSKVKQEIELQ  566 (594)
Q Consensus       544 E~~aKC~~LEeeLsr~k~e~e~~  566 (594)
                      .+..+.++|..++.-...+++-+
T Consensus      1122 K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998777766

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.12  E-value=1.6  Score=56.00  Aligned_cols=179  Identities=23%  Similarity=0.304  Sum_probs=103.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~  465 (594)
                      .++.=+..+....++++..+.++..-..+++..+..++...+....++.+++.++.-|++.+.....       .+..+.
T Consensus      1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~-------~l~~~~ 1687 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELRE-------KLEALE 1687 (1930)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence            4566666666677777777777766666666666666666555555555555555554444333333       333333


Q ss_pred             HhhhhhhhhhhhHHHHHHHHH---HHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 007664          466 AARGVAESKLSVVEAEMKTQL---ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS  542 (594)
Q Consensus       466 ~~~~~lEskl~~~eaEik~~L---~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS  542 (594)
                      ..+..+|+.+.-+-..|....   .+...-+.-.+.++..+++...+--+.++.+...+++...-..-+-.++..||.-+
T Consensus      1688 Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            333444443333333333211   11112234455666667777777778888888888888888888888898888766


Q ss_pred             HHHHHHhHHHHHHHhhhhHHHHHH-HHHHHhhhh
Q 007664          543 EENIANFQKSKDELSKVKQEIELQ-HEVKLQYLA  575 (594)
Q Consensus       543 ~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~~~~~  575 (594)
                      ..+..--..||.+    ..+++++ +|+.....+
T Consensus      1768 ~~le~~k~~LE~~----~kdLq~rL~e~E~~a~~ 1797 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQ----VKDLQLRLDEAEQAALK 1797 (1930)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHhhhh
Confidence            5554444444443    3345555 666654444

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.88  E-value=1.6  Score=51.87  Aligned_cols=64  Identities=22%  Similarity=0.388  Sum_probs=34.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF  449 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~  449 (594)
                      .+..+++.+..++..++..+..++.+...++..+..+...+.....++..++..+..+..++..
T Consensus       678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~  741 (1164)
T TIGR02169       678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE  741 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666666666666666666655555555555555555554444444444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK11637 AmiB activator; Provisional

Probab=96.68  E-value=1.3  Score=48.19  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK  462 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve  462 (594)
                      +..++.....++..++.++..+..+..+++..+.....++......+..++..+..++.+++..+..+..++.++.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555666655555555555555555555555555555555544444444444444444444444444444433

>PRK11637 AmiB activator; Provisional

Probab=96.49  E-value=0.78  Score=49.91  Aligned_cols=79  Identities=18%  Similarity=0.278  Sum_probs=59.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664          384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK  462 (594)
Q Consensus       384 ~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve  462 (594)
                      -..++.++.....++..++.++..++.+...++..+...+.++.....++..++.++..++.++.............+.
T Consensus        49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777888888888888888888888888888888888888888888888888888888877776666655555554

>PRK02224 chromosome segregation protein; Provisional

Probab=96.44  E-value=2.9  Score=49.16  Aligned_cols=53  Identities=23%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664          506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (594)
Q Consensus       506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k  560 (594)
                      .+..++.....+..++..++..|..|+..+..++.  ..+..++..++..+....
T Consensus       614 ~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~--e~l~~~~~~~~~~~~~l~  666 (880)
T PRK02224        614 KREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEYLEQVE  666 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHHH
Confidence            33333333344455555556666655554444432  234444444555444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.35  E-value=0.66  Score=44.10  Aligned_cols=7  Identities=0%  Similarity=0.098  Sum_probs=2.7

Q ss_pred             HhHHHHH
Q 007664          548 NFQKSKD  554 (594)
Q Consensus       548 KC~~LEe  554 (594)
                      ++..||.
T Consensus       116 kv~~le~  122 (143)
T PF12718_consen  116 KVKALEQ  122 (143)
T ss_pred             HHHHHHh
Confidence            3333433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.33  E-value=1.6  Score=45.04  Aligned_cols=180  Identities=24%  Similarity=0.353  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA  466 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~  466 (594)
                      ...++..++.++..+-..-.+++.+.+.+...+...+.+++........++..+..|+..++.+.-....+++++.....
T Consensus        52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e  131 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE  131 (312)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence            44455555555555555445555555555555555555555555555555555555555555555555555555443333


Q ss_pred             hh-----------hhhhhhhh-hHH---------------HHHHHHHHHH-----HhhHHHHH--------------HHH
Q 007664          467 AR-----------GVAESKLS-VVE---------------AEMKTQLALA-----NKSKQAAE--------------EEV  500 (594)
Q Consensus       467 ~~-----------~~lEskl~-~~e---------------aEik~~L~la-----~eS~s~~~--------------eeL  500 (594)
                      +.           ..|..++. ..-               .+|..+.+..     .+....|.              ..+
T Consensus       132 El~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~  211 (312)
T PF00038_consen  132 ELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEEL  211 (312)
T ss_dssp             HHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccccccc
Confidence            22           23333331 000               1222121110     01112222              233


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHhhc---HHHHHHhHHHHHHHhhhhHHHHHH
Q 007664          501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK-ERALS---EENIANFQKSKDELSKVKQEIELQ  566 (594)
Q Consensus       501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek-ERalS---~E~~aKC~~LEeeLsr~k~e~e~~  566 (594)
                      .....+...+..++..+.+++..|..+...|+..|.. +..+.   ..+...+..||.+|.....++.-+
T Consensus       212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~  281 (312)
T PF00038_consen  212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQ  281 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            3345555556666666666666666666666666532 11111   234555667777777766555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.30  E-value=3.5  Score=48.74  Aligned_cols=80  Identities=26%  Similarity=0.336  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR  468 (594)
Q Consensus       389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~  468 (594)
                      .++..+..++..++..+..+......++..+..++.++.....++..++..+..++.++..+......+..++.......
T Consensus       670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~  749 (1179)
T TIGR02168       670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI  749 (1179)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555555555544444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.20  E-value=1.8  Score=48.89  Aligned_cols=134  Identities=28%  Similarity=0.378  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH----H---HHhhHHHH
Q 007664          424 RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLA----L---ANKSKQAA  496 (594)
Q Consensus       424 ~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~----l---a~eS~s~~  496 (594)
                      .........|.+++.++..|..++    .....++.++..+-       ..+..+++|++....    .   .+......
T Consensus       211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~-------~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~  279 (522)
T PF05701_consen  211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEAS-------AELESLQAELEAAKESKLEEEAEAKEKSSEL  279 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhH
Confidence            333445555677777777777775    33333444444433       333334444432222    1   22223344


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHH-------HhHHHHHHHhhhhHHHHHHHH
Q 007664          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA-------NFQKSKDELSKVKQEIELQHE  568 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~a-------KC~~LEeeLsr~k~e~e~~~e  568 (594)
                      ...|..+..+...+...|..+..|+..|+..|.+|..+|+++|.--..+..       .+..|+.+|.+...+++..+.
T Consensus       280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~  358 (522)
T PF05701_consen  280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA  358 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence            455888899999999999999999999999999999999999988766554       466788888888877766533

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.18  E-value=6.4  Score=50.52  Aligned_cols=460  Identities=22%  Similarity=0.248  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHH------HHHHHHH
Q 007664           81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQE------QRIQETV  154 (594)
Q Consensus        81 ~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqE------qki~eav  154 (594)
                      .+=.+|..+.++==.--.-...+...+-.+.+...+++--+.-+|.-+++-|+.|-.+.-+-.++=+      .+|-|..
T Consensus       210 ~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~  289 (1822)
T KOG4674|consen  210 SLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELW  289 (1822)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555554444555666677777777778888888888888889999999887654433221      3555666


Q ss_pred             HHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-------------------------------------------
Q 007664          155 SKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD-------------------------------------------  191 (594)
Q Consensus       155 ~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~-------------------------------------------  191 (594)
                      ..++.+|..--.+|...|.++.+-|.++...++...+                                           
T Consensus       290 ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~  369 (1822)
T KOG4674|consen  290 KSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMV  369 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchh
Confidence            6666666655556666666665555544332221000                                           


Q ss_pred             -----------------HHHHHHHHHHHHhhhhhhHHHHHHH--------------hhhhHhHHhhhhhhhHHHHHhHHh
Q 007664          192 -----------------RDLCSKLEAAEKQNSALKLELLSLV--------------KELELRIVERDLSTKAAETASKQH  240 (594)
Q Consensus       192 -----------------~~L~~rLes~EKen~sLkyE~~~l~--------------kELeiR~~Ere~s~~aae~a~KQh  240 (594)
                                       .++......+.-++.+++.|+--++              =.|+=-..+-+-...+.-.-+..|
T Consensus       370 s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el  449 (1822)
T KOG4674|consen  370 SEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEEL  449 (1822)
T ss_pred             hhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             0222233333333333333333322              222222333333344455567889


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHhhcCCCC--------C-----------------CCCCCCCcccccCCCCCCCchhhhhh
Q 007664          241 LESIKKLAKVEAECLRLKAVVRKASPNT--------E-----------------NKSFTPSSIYVGSFTDSQSDNGERLL  295 (594)
Q Consensus       241 lEsvKKiakLEaECqRLr~l~rK~lp~~--------d-----------------~rs~~~~s~~~~s~~d~~sd~~erl~  295 (594)
                      -.+.++|.++|++.++|+...+..---+        |                 ....+.+++.+...+|++.-+.+||.
T Consensus       450 ~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv  529 (1822)
T KOG4674|consen  450 DFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLV  529 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHH
Confidence            9999999999999999987655432211        0                 01112233324444555555677774


Q ss_pred             cccccc------cc-----------cCccccc-cCCCC----CcchhhhhccCCCcccccccCCCCCCCccccc-cch--
Q 007664          296 GNETDN------CK-----------ISDSEVN-ECEPN----SSTSWASALAIEPDKNVKAVGRNVMVPSVDIN-LMD--  350 (594)
Q Consensus       296 ~~E~e~------~k-----------ls~~~~~-~~~~s----cs~SWAsALisEldk~~k~~~~~~~~~s~di~-LMD--  350 (594)
                      ..=+-+      ..           +-..+.. +....    ----=|++=|.+|.+--...       ..-|+ |.-  
T Consensus       530 ~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~-------~~~i~sLl~er  602 (1822)
T KOG4674|consen  530 EFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQ-------EQRIESLLTER  602 (1822)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            432211      00           0000000 00000    00001233333333110000       01111 111  


Q ss_pred             hHHHHHHhhcCCCCCCCCccccCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664          351 DFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ  430 (594)
Q Consensus       351 DFlEMEkLA~l~~~~~~~~~~~~~~~sd~~~~~~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~  430 (594)
                      ||+- +.||-.-+..+..+++....-.+..+.           .-.++-.|++.++....|+.+-.+-|.   .++...+
T Consensus       603 d~y~-e~l~~~e~~~~~k~nss~~~~t~~~~~-----------~e~~l~qLe~~le~~~~E~~~~~~~l~---e~~~~l~  667 (1822)
T KOG4674|consen  603 DMYK-ELLAELEDSHQLKPNSSALDQTEAPRA-----------KEKRLRQLENELESYKKEKRENLKKLQ---EDFDSLQ  667 (1822)
T ss_pred             HHHH-HhhhcccccccCCCCchhhcccccchh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence            2322 667655444212222222111222111           335677777777777777766665554   5555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----------HHHHHHhhHHHHHHHH
Q 007664          431 NQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT----------QLALANKSKQAAEEEV  500 (594)
Q Consensus       431 ~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~----------~L~la~eS~s~~~eeL  500 (594)
                      .......-.+..+.++++|+.+....++.-+....+...+|..+-..++.=|-+          +|..++.--.....++
T Consensus       668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev  747 (1822)
T KOG4674|consen  668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAEL  747 (1822)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            555566666777888888887777777777776666666665555544442222          2444444444444455


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHh-----hcHHHHHHhHHHHHHHhhhhHH
Q 007664          501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE------VEKERA-----LSEENIANFQKSKDELSKVKQE  562 (594)
Q Consensus       501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E------IekERa-----lS~E~~aKC~~LEeeLsr~k~e  562 (594)
                      ..+..+.+.+-.-...+..|...|+....+|..-      +..++-     .-..+..+..+|+..|++.+.+
T Consensus       748 ~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k  820 (1822)
T KOG4674|consen  748 SNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK  820 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444444443333333443333333333211      111111     1233445666777777776654

>PRK09039 hypothetical protein; Validated

Probab=96.16  E-value=0.99  Score=48.40  Aligned_cols=133  Identities=13%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS  476 (594)
Q Consensus       397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~  476 (594)
                      ++..++.+|..++++..+       .-.-+..-+.+...++..+.+|+.++..+...+..++.-..........++.++.
T Consensus        47 ~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~  119 (343)
T PRK09039         47 EISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG  119 (343)
T ss_pred             HHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence            555555555555555544       3344455556666677778888888888777777766655533333345555555


Q ss_pred             hHHHHHHHHHHHHHhhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664          477 VVEAEMKTQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (594)
Q Consensus       477 ~~eaEik~~L~la~eS~---s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe  536 (594)
                      .+.+++..+.....+..   ...-.++.+++.+.-.++..|..++..-.....+|..|+.+|+
T Consensus       120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~  182 (343)
T PRK09039        120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN  182 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444333333222222   1233344444444444444444444444444444444444443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=96.02  E-value=1.7  Score=49.61  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEV  459 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~  459 (594)
                      +...++.+.....+|......|+.+...++..+...+..|...+.....+..+..++....+.+...+..+..
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566656555555555555555555555555555555444444444444444444444433333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.89  E-value=1.8  Score=49.45  Aligned_cols=166  Identities=24%  Similarity=0.294  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007664          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQR---------------RLETSQNQLKEAELKLEELETQLAFANK  452 (594)
Q Consensus       388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~---------------qle~S~~~L~Eae~kL~ELQ~QL~~aN~  452 (594)
                      +.||-.+..+++.-=+|+..||++=..|+..+...+.               .+...+.-+.++....++++..+.-+.+
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            4588888889999999999999988888888765443               3444444455554455555555444444


Q ss_pred             hHHHHHHHHHHH-------HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664          453 SKQAVEVEMKAA-------IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLR  525 (594)
Q Consensus       453 sk~~~e~~ve~~-------~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~  525 (594)
                      ....+..++..+       ..+......+++-+++|                  +.-....++.|+..+..+..|...|.
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe------------------~~~~krr~~~le~e~~~Lk~en~rl~  182 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAE------------------INTLKRRIKALEDELKRLKAENSRLR  182 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH------------------HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            444333333322       22222333333333333                  33446667778999999999999999


Q ss_pred             HHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh--HHHHHHHHHHH
Q 007664          526 SKVISLEDEVEKERALSEENIANFQKSKDELSKVK--QEIELQHEVKL  571 (594)
Q Consensus       526 ~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k--~e~e~~~e~~~  571 (594)
                      ..|..+-.++++|..+-.++..+|+.|-++|.=+.  ++.+|-++...
T Consensus       183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            99999999999999999999999999999998774  33444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=95.59  E-value=6.7  Score=46.17  Aligned_cols=140  Identities=23%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS  476 (594)
Q Consensus       397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~  476 (594)
                      ++...+.+++.+..+..+++..+.......+.....+.++..++.++..+++.++..+..++ .+.++..+...+++.+.
T Consensus       531 ~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~  609 (880)
T PRK02224        531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIE  609 (880)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444443344444444444445555555555555444444 34444444433333333


Q ss_pred             hHHHHHHHH----------HHHH------------HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664          477 VVEAEMKTQ----------LALA------------NKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (594)
Q Consensus       477 ~~eaEik~~----------L~la------------~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E  534 (594)
                      -++.++...          |.--            ..--......+.........+..++..++.+...+...+..|+..
T Consensus       610 ~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~  689 (880)
T PRK02224        610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE  689 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333322111          1000            011113334444555555666666666666667777777666665


Q ss_pred             HHH
Q 007664          535 VEK  537 (594)
Q Consensus       535 Iek  537 (594)
                      ++.
T Consensus       690 ~e~  692 (880)
T PRK02224        690 LEE  692 (880)
T ss_pred             HHH
Confidence            543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.50  E-value=9.4  Score=47.27  Aligned_cols=63  Identities=21%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA  448 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~  448 (594)
                      .++.+++.+..++..+.+..+.++.........+..+...+......+.-++.++..++.+..
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  666 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE  666 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            566666666666666666655555554444444444444444444444444444444444433

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=95.40  E-value=3.5  Score=41.73  Aligned_cols=147  Identities=19%  Similarity=0.271  Sum_probs=81.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEM--------------DLKESQRRLETSQNQLKEAELKLEELETQLAFAN  451 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~--------------aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN  451 (594)
                      .++.+++.++.+...+..|++..+-.-++-+.              .......+|..+++-..+++.|..+.-..|-.++
T Consensus        15 ~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE   94 (205)
T KOG1003|consen   15 LLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIE   94 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888887777776654433222211              1222334556666666666777777777777776


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664          452 KSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL  531 (594)
Q Consensus       452 ~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sL  531 (594)
                      +.-...+.+.+.++.+..+|+-.+..+..-++    +-..+...+.+.++-.....+.+..+|...++-++-...-|..|
T Consensus        95 ~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk----~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakL  170 (205)
T KOG1003|consen   95 GELERAEERAEAAESQSEELEEDLRILDSNLK----SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKL  170 (205)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            66666666666555555555554444433322    22222334444445555555555555555555555555555555


Q ss_pred             HHHHH
Q 007664          532 EDEVE  536 (594)
Q Consensus       532 E~EIe  536 (594)
                      +.+++
T Consensus       171 eke~D  175 (205)
T KOG1003|consen  171 EKERD  175 (205)
T ss_pred             cccHH
Confidence            55544

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.25  E-value=4.3  Score=41.87  Aligned_cols=66  Identities=21%  Similarity=0.368  Sum_probs=50.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664          385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA  450 (594)
Q Consensus       385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a  450 (594)
                      +.+..++..+...+..|..+++........++..+..++..++..-..-..++.++.-|+-+|++.
T Consensus        71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl  136 (312)
T PF00038_consen   71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL  136 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            356677777888888888888887777777888887777777777777777777777777777774

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.21  E-value=5.7  Score=47.28  Aligned_cols=51  Identities=31%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHH
Q 007664          511 ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE  562 (594)
Q Consensus       511 EsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e  562 (594)
                      .+.++.++.+++..+.++.-|+.++.+.|+. .++..+|+.|+.+..++..+
T Consensus       513 ~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee  563 (775)
T PF10174_consen  513 DSEIERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREE  563 (775)
T ss_pred             hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHH
Confidence            3566677788888899999999999997766 58888899999888777543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=95.12  E-value=7.6  Score=45.14  Aligned_cols=132  Identities=16%  Similarity=0.227  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH---HHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q 007664          436 AELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQAAEEEVKSAKSKKEAAES  512 (594)
Q Consensus       436 ae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEi---k~~L~la~eS~s~~~eeL~a~~a~kkelEs  512 (594)
                      +...+..|..+|+.-...+..+..-...-+.+..+|+..|+.+....   .+.|+.-.   +...+ +..+-+..++|..
T Consensus        92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq---sdk~t-~SRAlsQN~eLK~  167 (617)
T PF15070_consen   92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ---SDKAT-ASRALSQNRELKE  167 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHhHHHHHH
Confidence            34444555555544333333443333344455556666666554432   22222211   11112 2233455678888


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH-HHHHH
Q 007664          513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ-HEVKL  571 (594)
Q Consensus       513 qLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~  571 (594)
                      ||..++.=+..|++.---|...+.-|...--++..||.+|+..+-.++.-++.. +|+..
T Consensus       168 QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~  227 (617)
T PF15070_consen  168 QLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS  227 (617)
T ss_pred             HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            888888888888888878888888888888899999999998888876655555 44443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=95.10  E-value=2.5  Score=43.80  Aligned_cols=47  Identities=36%  Similarity=0.538  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL  433 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L  433 (594)
                      +..+++.+...+..++..++.++.++..++..+.++..++...+..+
T Consensus        36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555444444

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.48  E-value=5  Score=46.39  Aligned_cols=172  Identities=20%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 007664          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN---KSKQAVEVEMKAA  464 (594)
Q Consensus       388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN---~sk~~~e~~ve~~  464 (594)
                      ..|++.+..++..+...++.++.+...+...+..+...++.......+.+..+.=...-.++..   .....++.-+.+.
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s  406 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS  406 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555554444444444444433333332222222222   2333344445555


Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-Hhhc-
Q 007664          465 IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKE-RALS-  542 (594)
Q Consensus       465 ~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekE-RalS-  542 (594)
                      .++...|.++-+-..+.+...+..-+...+....+....-.+.+.+..+++.+..|+......+.-|..++++= +..+ 
T Consensus       407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R  486 (594)
T PF05667_consen  407 EQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR  486 (594)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence            55666666666666655544433333322222222222234444455555555555555555555555544420 0000 


Q ss_pred             -------HHHHHHhHHHHHHHhhh
Q 007664          543 -------EENIANFQKSKDELSKV  559 (594)
Q Consensus       543 -------~E~~aKC~~LEeeLsr~  559 (594)
                             -|+..-.++=.++|.|.
T Consensus       487 s~Yt~RIlEIv~NI~KQk~eI~KI  510 (594)
T PF05667_consen  487 SAYTRRILEIVKNIRKQKEEIEKI  510 (594)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH
Confidence                   24555566666666666

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.47  E-value=9.8  Score=46.59  Aligned_cols=79  Identities=15%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 007664          405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT  484 (594)
Q Consensus       405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~  484 (594)
                      +..++++.+|.-  +....++|......+.-.+++...++..+.........+..++.+.+++.+.+-.-+.....||+.
T Consensus       264 l~~Lk~k~~W~~--V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~  341 (1074)
T KOG0250|consen  264 LEQLKAKMAWAW--VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEE  341 (1074)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHH
Confidence            445555555432  333444555555555555555555555555555555555544555555555444444444555444


Q ss_pred             H
Q 007664          485 Q  485 (594)
Q Consensus       485 ~  485 (594)
                      .
T Consensus       342 ~  342 (1074)
T KOG0250|consen  342 A  342 (1074)
T ss_pred             H
Confidence            3

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.41  E-value=5.2  Score=47.04  Aligned_cols=30  Identities=23%  Similarity=0.451  Sum_probs=12.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664          506 KKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (594)
Q Consensus       506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EI  535 (594)
                      .++.||..+..+..|++.....+..||.++
T Consensus       546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  546 RRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444443

; GO: 0016021 integral to membrane

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.35  E-value=11  Score=46.47  Aligned_cols=151  Identities=21%  Similarity=0.310  Sum_probs=91.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hh
Q 007664          384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA-----------NK  452 (594)
Q Consensus       384 ~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a-----------N~  452 (594)
                      +..++..+..+.+++-.|+..+++...++.+++.++..++..+..++..+.-+...++-.+..|+..           .+
T Consensus       400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~  479 (1293)
T KOG0996|consen  400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE  479 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            4567788999999999999999999999999999988888877777766666655555555555542           33


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          453 SKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ---AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI  529 (594)
Q Consensus       453 sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s---~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~  529 (594)
                      .+..++.++.....+.+++.+++..++.|++=++...+.-..   .....|.++.+.+.+-...+-.+..++..+..++.
T Consensus       480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~  559 (1293)
T KOG0996|consen  480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK  559 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            344455555555555567777777777776644444332221   12223333334444444444444444444333333


Q ss_pred             hhHHH
Q 007664          530 SLEDE  534 (594)
Q Consensus       530 sLE~E  534 (594)
                      ..+.+
T Consensus       560 ~~~k~  564 (1293)
T KOG0996|consen  560 EKEKE  564 (1293)
T ss_pred             HHHHh
Confidence            33333

>TIGR00606 rad50 rad50

Probab=94.27  E-value=20  Score=44.87  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=59.0

Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHhh
Q 007664          465 IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL---EDEVEKERAL  541 (594)
Q Consensus       465 ~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sL---E~EIekERal  541 (594)
                      ..+...++.+|..+..+....-.  ..+-.....++...+.++..+...+..+..+...+..+|..|   ..++..++.-
T Consensus       798 ~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk  875 (1311)
T TIGR00606       798 QMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ  875 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555544444331110  122344556666667777777666677777777777777777   5555555555


Q ss_pred             cHHHHHHhHHHHHHHhhhhHHHHHH
Q 007664          542 SEENIANFQKSKDELSKVKQEIELQ  566 (594)
Q Consensus       542 S~E~~aKC~~LEeeLsr~k~e~e~~  566 (594)
                      -.+-..+-.+|+.+|.....+++-+
T Consensus       876 l~~~l~~r~~le~~L~el~~el~~l  900 (1311)
T TIGR00606       876 IGTNLQRRQQFEEQLVELSTEVQSL  900 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556667778888888876655444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.09  E-value=7.4  Score=39.29  Aligned_cols=166  Identities=17%  Similarity=0.234  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664          393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA---ELKLEELETQLAFANKSKQAVEVEMKAAIAARG  469 (594)
Q Consensus       393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Ea---e~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~  469 (594)
                      -+.+++..|+-.++.++-.=+.|--.+.....++...+..+..+   +..+++|+.-+...++.+..+-..-+-++....
T Consensus        19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q   98 (193)
T PF14662_consen   19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ   98 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777777777777778888888888888777   888999999999999999998888888888888


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHH
Q 007664          470 VAESKLSVVEAEMKTQLALANKSKQ---AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI  546 (594)
Q Consensus       470 ~lEskl~~~eaEik~~L~la~eS~s---~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~  546 (594)
                      .|..++.-++.|-++.+.-....+.   ...++-..+..+.=++++=+--..+.+..-...|..|..-|+.=|+.-.++.
T Consensus        99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR  178 (193)
T PF14662_consen   99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELR  178 (193)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888888887777655443332   2222333344444445555556778888888899999999998899999999


Q ss_pred             HHhHHHHHHHhh
Q 007664          547 ANFQKSKDELSK  558 (594)
Q Consensus       547 aKC~~LEeeLsr  558 (594)
                      .+...||++|+-
T Consensus       179 ~e~s~LEeql~q  190 (193)
T PF14662_consen  179 LEKSRLEEQLSQ  190 (193)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.03  E-value=12  Score=41.51  Aligned_cols=36  Identities=17%  Similarity=0.191  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664          421 ESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA  456 (594)
Q Consensus       421 ~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~  456 (594)
                      ..+.+++.........+..+..|+.++...+.....
T Consensus       217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~  252 (562)
T PHA02562        217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED  252 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334444444444444444444444444444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.97  E-value=6.2  Score=46.44  Aligned_cols=23  Identities=35%  Similarity=0.596  Sum_probs=12.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENM  408 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKlekl  408 (594)
                      .++.||..++++...|+.|+-.|
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L  479 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNL  479 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554433

; GO: 0016021 integral to membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.95  E-value=5.7  Score=42.59  Aligned_cols=139  Identities=22%  Similarity=0.337  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRR----LETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA  464 (594)
Q Consensus       389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~q----le~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~  464 (594)
                      .-++.++.++-.|++.-..|..|-..|...-.....+    +.-+-.+|.+|..+++.|+..|..-.+.......++-..
T Consensus       160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L  239 (306)
T PF04849_consen  160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL  239 (306)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467777788878777766666665555443322221    233556777888888888888877777777777777766


Q ss_pred             HHhhhhhhhhhhhHHH---HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664          465 IAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK  527 (594)
Q Consensus       465 ~~~~~~lEskl~~~ea---Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~K  527 (594)
                      ....-.+..++...-.   |+...|..++++......+|.-+..+|.++..-|..++.|+++++.+
T Consensus       240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~  305 (306)
T PF04849_consen  240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR  305 (306)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            6666666766664433   56666888899988888999999999999999999999999999875

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=93.81  E-value=23  Score=43.87  Aligned_cols=175  Identities=29%  Similarity=0.382  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG  469 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~  469 (594)
                      ++..+..++..++..+.+...+...+...+..+..++...+.++..+...+..+..++.........+..++........
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  747 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE  747 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666666666666666666666666666666665555555555555555555444444444444444444443


Q ss_pred             hhhhhhhhHHHHHHHH---HHHHHhhH--------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007664          470 VAESKLSVVEAEMKTQ---LALANKSK--------------QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLE  532 (594)
Q Consensus       470 ~lEskl~~~eaEik~~---L~la~eS~--------------s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE  532 (594)
                      .+...+..++.++...   +....+..              ....+.+......+..+..++..++.++..+......|+
T Consensus       748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1163)
T COG1196         748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE  827 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333332222222111   11111111              122234444445555555555555555555555555555


Q ss_pred             HHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664          533 DEVEKERALSEENIANFQKSKDELSKVKQEIE  564 (594)
Q Consensus       533 ~EIekERalS~E~~aKC~~LEeeLsr~k~e~e  564 (594)
                      .+|+.=+.--.++..+|..|...+......++
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~  859 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEELEKELE  859 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            55555333334677777777777766544433

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.78  E-value=9.7  Score=39.55  Aligned_cols=127  Identities=26%  Similarity=0.345  Sum_probs=62.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 007664          404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK  483 (594)
Q Consensus       404 KleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik  483 (594)
                      ....++-.......+|..++..++.....+..++..+.+|+.|       +.+++.++.++..+...++.++.    .++
T Consensus        18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~q-------v~~~e~ei~~~r~r~~~~e~kl~----~v~   86 (239)
T COG1579          18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQ-------VSQLESEIQEIRERIKRAEEKLS----AVK   86 (239)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh----ccc
Confidence            3344444444445555555555555555444444444444444       55555555555555544433221    111


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHH
Q 007664          484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI  546 (594)
Q Consensus       484 ~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~  546 (594)
                      .    +++. .++.-++.........++..+..+..+...|..++..|...+..-+....++.
T Consensus        87 ~----~~e~-~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~  144 (239)
T COG1579          87 D----EREL-RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE  144 (239)
T ss_pred             c----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0    0111 23344455555566666666666666666666666666666655555444443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.74  E-value=3.7  Score=49.77  Aligned_cols=124  Identities=20%  Similarity=0.251  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH-------HHHH
Q 007664          412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA-------EMKT  484 (594)
Q Consensus       412 K~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~ea-------Eik~  484 (594)
                      +.++++.|.....+++.+...+...++...-|+...+..+.+....+..+...+.....|.+.+--+++       +.++
T Consensus       789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~  868 (1174)
T KOG0933|consen  789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK  868 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence            344555555555555555555555555555555554444444444444444333333333333322222       2222


Q ss_pred             HHHHHH-----------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664          485 QLALAN-----------------KSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (594)
Q Consensus       485 ~L~la~-----------------eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI  535 (594)
                      .+..-+                 -+......+...+.-+++.++..+..++.|....+.+|..|..+.
T Consensus       869 ~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  869 AQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH  936 (1174)
T ss_pred             HHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence            211111                 111122233333466788888888888888888888888888774

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=93.69  E-value=6.9  Score=37.56  Aligned_cols=90  Identities=21%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007664          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKE-------SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVE  460 (594)
Q Consensus       388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~-------~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~  460 (594)
                      ..+|..+..+.+.|+.+++.|+++....+..+-.       ++..+.+...++.++-..+..|...|+.+...+..+...
T Consensus         9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~   88 (140)
T PF10473_consen    9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE   88 (140)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466666777777777777777666555554443       444445555556666666666777777777777777776


Q ss_pred             HHHHHHhhhhhhhhhhh
Q 007664          461 MKAAIAARGVAESKLSV  477 (594)
Q Consensus       461 ve~~~~~~~~lEskl~~  477 (594)
                      +..+-++..+|++....
T Consensus        89 lq~~q~kv~eLE~~~~~  105 (140)
T PF10473_consen   89 LQKKQEKVSELESLNSS  105 (140)
T ss_pred             HHHHHHHHHHHHHHhHH
Confidence            66666666665554433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=8  Score=46.08  Aligned_cols=95  Identities=19%  Similarity=0.326  Sum_probs=77.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664          385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA  464 (594)
Q Consensus       385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~  464 (594)
                      ..+..||+.+..++-.|..||--+...+-....++.....+.+.+......+.+++.|+|..|...--+++-++.+++.+
T Consensus       440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~  519 (1118)
T KOG1029|consen  440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK  519 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            45789999999999999999999999988888899999899888888888889999999998888777888888888765


Q ss_pred             HHhhhhhhhhhhhHH
Q 007664          465 IAARGVAESKLSVVE  479 (594)
Q Consensus       465 ~~~~~~lEskl~~~e  479 (594)
                      -.-+..-.+++..++
T Consensus       520 q~a~~~~~~~~s~L~  534 (1118)
T KOG1029|consen  520 QSAHKETTQRKSELE  534 (1118)
T ss_pred             hhhccCcchHHHHHH
Confidence            555544344343333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=93.44  E-value=4  Score=47.16  Aligned_cols=102  Identities=27%  Similarity=0.271  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 007664          422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVK  501 (594)
Q Consensus       422 ~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~  501 (594)
                      +...++..++++..++...+.|..||..+|++.....      ......+...||+.+.+|..+...-.........++.
T Consensus       240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~------~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e  313 (629)
T KOG0963|consen  240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK------IDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE  313 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467888888899999999999999999998877541      1122466778888888988776555555555556666


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          502 SAKSKKEAAESRLRAVEAEMETLRSKVI  529 (594)
Q Consensus       502 a~~a~kkelEsqLe~~EaEa~~L~~KV~  529 (594)
                      ...+....++.++.....++++|..|..
T Consensus       314 ~~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  314 KHKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666666665543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.43  E-value=18  Score=41.62  Aligned_cols=82  Identities=30%  Similarity=0.406  Sum_probs=47.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL-------EELETQLAFANKSKQAVEV  459 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL-------~ELQ~QL~~aN~sk~~~e~  459 (594)
                      +..|.+.+......|+..+..|..+...++..|...+...+....+..++....       ..|+.++..+...+..++.
T Consensus       148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe  227 (546)
T PF07888_consen  148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE  227 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777777666666555554444443333       3444444444445555555


Q ss_pred             HHHHHHHhh
Q 007664          460 EMKAAIAAR  468 (594)
Q Consensus       460 ~ve~~~~~~  468 (594)
                      ++..+..+.
T Consensus       228 di~~l~qk~  236 (546)
T PF07888_consen  228 DIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHH
Confidence            554443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK03918 chromosome segregation protein; Provisional

Probab=93.17  E-value=22  Score=41.80  Aligned_cols=18  Identities=17%  Similarity=0.165  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 007664          412 KSELEMDLKESQRRLETS  429 (594)
Q Consensus       412 K~eLE~aL~~~~~qle~S  429 (594)
                      ...+...+..++.++...
T Consensus       202 ~~~l~~ei~~l~~e~~~l  219 (880)
T PRK03918        202 LEEVLREINEISSELPEL  219 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.15  E-value=0.026  Score=66.77  Aligned_cols=155  Identities=20%  Similarity=0.356  Sum_probs=0.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 007664          405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT  484 (594)
Q Consensus       405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~  484 (594)
                      -.+|+++..+|++.|............+++-+...+.+||.+|+.+......+...+..++.+...|.+.|.-+...   
T Consensus       548 kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~---  624 (859)
T PF01576_consen  548 KKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREA---  624 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            46788888888988888888888888888888888889998888877777666544444433333333333322222   


Q ss_pred             HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHH
Q 007664          485 QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI  563 (594)
Q Consensus       485 ~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~  563 (594)
                       ++.+......++.++.-+......+-.+--.+..+...|...|..|+.+++.+..-.....-|+++...+..++..++
T Consensus       625 -~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL  702 (859)
T PF01576_consen  625 -LEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEEL  702 (859)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence             555555566666777777777777776766777777888888888888888888888888888888888888876443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=92.97  E-value=0.084  Score=61.05  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664          504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK  537 (594)
Q Consensus       504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek  537 (594)
                      ...+..+..++..++.++..|...+..|+.+|++
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999986

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PRK03918 chromosome segregation protein; Provisional

Probab=92.50  E-value=27  Score=41.10  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhh--hhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHh
Q 007664          193 DLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLS--TKAAETASKQHLESIKKLAKVEAECLRLKAVVR  262 (594)
Q Consensus       193 ~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s--~~aae~a~KQhlEsvKKiakLEaECqRLr~l~r  262 (594)
                      .+...++.++++...++.++..+++.+.  ..+..+.  ....... ++-.+....+..+..++.+++.+.+
T Consensus       304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~--~~e~~~~~~~e~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~  372 (880)
T PRK03918        304 EYLDELREIEKRLSRLEEEINGIEERIK--ELEEKEERLEELKKKL-KELEKRLEELEERHELYEEAKAKKE  372 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666666666554  1111111  1111111 3333444555555556666555543

>TIGR00606 rad50 rad50

Probab=92.47  E-value=37  Score=42.59  Aligned_cols=27  Identities=30%  Similarity=0.252  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 007664          193 DLCSKLEAAEKQNSALKLELLSLVKEL  219 (594)
Q Consensus       193 ~L~~rLes~EKen~sLkyE~~~l~kEL  219 (594)
                      .+..-+....++...+.-++..+++++
T Consensus       574 ~l~~~~~~~~~el~~~~~~~~~~~~el  600 (1311)
T TIGR00606       574 QLEDWLHSKSKEINQTRDRLAKLNKEL  600 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=92.17  E-value=39  Score=42.25  Aligned_cols=55  Identities=27%  Similarity=0.343  Sum_probs=34.1

Q ss_pred             HHHHHHHhhcccch-HHHHHHHHHHHHHhh----hHHHhHHHHHHHHHHHHHHhhhhhhh
Q 007664           67 EKLSAALLNVSAKE-DLVKQHAKVAEEAVS----GWEKAENELSTLKQQLKAASQKNSAL  121 (594)
Q Consensus        67 ekLs~al~~~~~Kd-~lvkqh~KvaeEAv~----GwEKae~E~~~lK~~Le~~~~~~~~~  121 (594)
                      ++|-....++.-++ .|.-+..|.+++=++    --.+.++.+..++.+|+.+.+.+..+
T Consensus       475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~  534 (1317)
T KOG0612|consen  475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA  534 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555333 444455666665443    55677888888888888886666554

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=91.65  E-value=54  Score=42.74  Aligned_cols=183  Identities=23%  Similarity=0.309  Sum_probs=116.9

Q ss_pred             hhhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH---HHH
Q 007664           58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA---LKE  134 (594)
Q Consensus        58 ~~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~A---LKe  134 (594)
                      +...|+.|+.-|.....+.++.+.       ..++.+   .+..-|+..++.+|+...-...-..+|..-|-..   +|.
T Consensus       634 ~e~~l~qLe~~le~~~~E~~~~~~-------~l~e~~---~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~  703 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKEKRENLK-------KLQEDF---DSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE  703 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577889999999977777765543       334444   3456688899999988877777777777766654   455


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHHHhhhhhh
Q 007664          135 CVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAAASAD--RDLCSKLEAAEKQNSALK  209 (594)
Q Consensus       135 CmrQLr~~rEEqEqki~eav~kks~e~e~~~~el---E~kl~e~~~~L~~~~~e~~a~~~--~~L~~rLes~EKen~sLk  209 (594)
                      =|-.|+    ++-+.++..|.+.=+....+..+|   ..++.-+...+...+.|+....+  .-|..-++++    ...+
T Consensus       704 e~~tL~----er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l----~~e~  775 (1822)
T KOG4674|consen  704 EVETLE----ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL----SAEQ  775 (1822)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            555555    667777777776644333333332   23444444555555555543221  2344444444    4456


Q ss_pred             HHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhc
Q 007664          210 LELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA  264 (594)
Q Consensus       210 yE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~  264 (594)
                      |.++.+-..|++=..+++.+    ++|-|+.++  .+|-.|+-+.++|+.=....
T Consensus       776 ~~L~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~klq~~  824 (1822)
T KOG4674|consen  776 ESLQLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKLQEK  824 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777776665    567788887  78899999999987655443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.30  E-value=18  Score=43.27  Aligned_cols=56  Identities=14%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             HHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHH
Q 007664          497 EEEVKSAKSKKEAA----ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS  552 (594)
Q Consensus       497 ~eeL~a~~a~kkel----EsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~L  552 (594)
                      ..+|++...++..+    +-++..++.|.+..-..|+.+-..+.+=|.-..-...+|++|
T Consensus       530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~  589 (1118)
T KOG1029|consen  530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL  589 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455544444433    344555667777777777777777666555554445555544

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.61  E-value=3.3  Score=40.67  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=15.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLR  525 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~  525 (594)
                      .++.+++-.+..++.++..++.|-..|.
T Consensus       151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  151 DELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555556666666666655554

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=90.39  E-value=15  Score=34.15  Aligned_cols=42  Identities=26%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE  427 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle  427 (594)
                      ++..++..+...+.....++..+..+..........++..|+
T Consensus         7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE   48 (132)
T PF07926_consen    7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE   48 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555556666666666666666555555555555665555

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.31  E-value=17  Score=41.88  Aligned_cols=100  Identities=21%  Similarity=0.323  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664          454 KQAVEVEMKAAIAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS  530 (594)
Q Consensus       454 k~~~e~~ve~~~~~~~~lEskl~~~ea---Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s  530 (594)
                      ++.++..|+.+-.....-|+.++.++.   ++++.++++.=|-    .+...|+.++.++.--+..+..+...|+.+|-.
T Consensus       289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~----~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~  364 (581)
T KOG0995|consen  289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISG----EDVERMNLERNKLKRELNKIQSELDRLSKEVWE  364 (581)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444443333333333333333443   3444455553332    567788999999999999999999999999999


Q ss_pred             hHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664          531 LEDEVEKERALSEENIANFQKSKDELSKVK  560 (594)
Q Consensus       531 LE~EIekERalS~E~~aKC~~LEeeLsr~k  560 (594)
                      ++.+++.   .-.++..+..++-..+.|.+
T Consensus       365 ~~l~~~~---~f~~le~~~~~~~~l~~~i~  391 (581)
T KOG0995|consen  365 LKLEIED---FFKELEKKFIDLNSLIRRIK  391 (581)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            9988763   33344445555555555544

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.30  E-value=39  Score=41.32  Aligned_cols=87  Identities=20%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH--------------HHHHH------------------hhHHHHHH
Q 007664          451 NKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ--------------LALAN------------------KSKQAAEE  498 (594)
Q Consensus       451 N~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~--------------L~la~------------------eS~s~~~e  498 (594)
                      .+--..+..+|+..-++..+|+--|+.+.+||...              |+-+|                  -..+-...
T Consensus       324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k  403 (1243)
T KOG0971|consen  324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK  403 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33334444555555555567777777777776543              22222                  11123455


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664          499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK  537 (594)
Q Consensus       499 eL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek  537 (594)
                      +|+..+++..++..+-+.+..++..+..+|.-|.++|+.
T Consensus       404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA  442 (1243)
T KOG0971|consen  404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA  442 (1243)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667778888888888888888888888888887777763

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.80  E-value=60  Score=40.14  Aligned_cols=127  Identities=22%  Similarity=0.200  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhh--hH-------HHHHHHHHH
Q 007664          131 ALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASA--DR-------DLCSKLEAA  201 (594)
Q Consensus       131 ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~--~~-------~L~~rLes~  201 (594)
                      .|++-+.-++-.=+..++.+.-...-.|..=+ ...-|+.+|......+-.+..+.....  -.       .....+...
T Consensus       361 ~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~-~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~  439 (1174)
T KOG0933|consen  361 KLKEAFQEDSKLLEKAEELVESLTAGLSSNED-EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATA  439 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence            46666666666666666555555444444433 566677777776666555544332111  00       111222222


Q ss_pred             HHhhhhhhHHHHHHHhhhh---HhHHhhhhhhhHHHHHhHHhHHhH-HHHHHHHHHHHHHHH
Q 007664          202 EKQNSALKLELLSLVKELE---LRIVERDLSTKAAETASKQHLESI-KKLAKVEAECLRLKA  259 (594)
Q Consensus       202 EKen~sLkyE~~~l~kELe---iR~~Ere~s~~aae~a~KQhlEsv-KKiakLEaECqRLr~  259 (594)
                      -+++-...-++..++.+.+   -|-....|. -..+.+-+||.... .-|.+|..+..||.+
T Consensus       440 ~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~-~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a  500 (1174)
T KOG0933|consen  440 SAEYVKDIEELDALQNEVEKLKKRLQSLGYK-IGQEEALKQRRAKLHEDIGRLKDELDRLLA  500 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222222223333332221   111111222 23456667777766 456788888777765

>PRK04863 mukB cell division protein MukB; Provisional

Probab=89.74  E-value=72  Score=41.04  Aligned_cols=24  Identities=13%  Similarity=0.171  Sum_probs=9.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHH
Q 007664          504 KSKKEAAESRLRAVEAEMETLRSK  527 (594)
Q Consensus       504 ~a~kkelEsqLe~~EaEa~~L~~K  527 (594)
                      ......++.++..+++....++..
T Consensus       455 e~qL~elE~kL~~lea~leql~~~  478 (1486)
T PRK04863        455 TEELLSLEQKLSVAQAAHSQFEQA  478 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444333333

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=89.00  E-value=65  Score=39.51  Aligned_cols=162  Identities=25%  Similarity=0.363  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664          394 LIHRTAELEEELENMRAEKSELEMDLKES------QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA  467 (594)
Q Consensus       394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~------~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~  467 (594)
                      ++.|+.+|.+||+-+...+.|=...|.+.      .+++..-+.++++.   -++||.+|..+......+..=-+.--..
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q---qa~Lqrel~raR~e~keaqe~ke~~k~e  305 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ---QADLQRELKRARKEAKEAQEAKERYKEE  305 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999888776665544443322      24555666666654   6678888777665444321100000000


Q ss_pred             hhhhhhhhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------------HHHHHHh
Q 007664          468 RGVAESKLSV--VEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMET---------------LRSKVIS  530 (594)
Q Consensus       468 ~~~lEskl~~--~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~---------------L~~KV~s  530 (594)
                      ....-.-+++  ++-|+      |.+--.-...++.++.....+|+.-|+.+.+|+++               |.-.-..
T Consensus       306 mad~ad~iEmaTldKEm------AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r  379 (1243)
T KOG0971|consen  306 MADTADAIEMATLDKEM------AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR  379 (1243)
T ss_pred             HHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence            0000000000  00111      11111122334445555555555555555555443               2222233


Q ss_pred             hHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664          531 LEDEVEKERALSEENIANFQKSKDELSKVKQEIE  564 (594)
Q Consensus       531 LE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e  564 (594)
                      |-+-+-.=|.+|.....--+++-.++.++..|+.
T Consensus       380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~  413 (1243)
T KOG0971|consen  380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELE  413 (1243)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH
Confidence            4444455567777777777777777777765543

>PRK09039 hypothetical protein; Validated

Probab=88.96  E-value=35  Score=36.88  Aligned_cols=64  Identities=17%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k  560 (594)
                      ..+|....+.+.+.-.++..+..++..|+..+..|+..|..=.....+..++..+|+..|....
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~  185 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL  185 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777888888888999999999999999999999998777777788888888877777653

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=88.88  E-value=59  Score=38.82  Aligned_cols=152  Identities=22%  Similarity=0.256  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 007664          102 NELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT  181 (594)
Q Consensus       102 ~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~  181 (594)
                      .|+.-||+||.-+-..+..       |-..|.++-.||-..+.+=- .-|+-|..-+..+..++..-..+  +...-.. 
T Consensus       265 ~EiqKL~qQL~qve~EK~~-------L~~~L~e~Q~qLe~a~~als-~q~eki~~L~e~l~aL~~l~~~k--e~~~~~d-  333 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSS-------LLSNLQESQKQLEHAQGALS-EQQEKINRLTEQLDALRKLQEDK--EQQSAED-  333 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccch--hhhhhhh-
Confidence            4688899999977666664       77889999999987765422 11122222222222222100000  0000000 


Q ss_pred             hhhhhhhh-----------hhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhH---hH-HhhhhhhhHHHHHhHHhHHhHH-
Q 007664          182 AKSEAAAS-----------ADRDLCSKLEAAEKQNSALKLELLSLVKELEL---RI-VERDLSTKAAETASKQHLESIK-  245 (594)
Q Consensus       182 ~~~e~~a~-----------~~~~L~~rLes~EKen~sLkyE~~~l~kELei---R~-~Ere~s~~aae~a~KQhlEsvK-  245 (594)
                      ...+....           ....|..++..+..|+..||-||..|..++.-   +- .++.........-..++.-..+ 
T Consensus       334 ~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~  413 (717)
T PF09730_consen  334 SEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKS  413 (717)
T ss_pred             cccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00000000           01357788888899999999998888664432   21 2222223333444444444445 


Q ss_pred             ------HHHHHHHHHHHHHHHHhhc
Q 007664          246 ------KLAKVEAECLRLKAVVRKA  264 (594)
Q Consensus       246 ------KiakLEaECqRLr~l~rK~  264 (594)
                            +|..||++++-++.++...
T Consensus       414 ~re~qeri~~LE~ELr~l~~~A~E~  438 (717)
T PF09730_consen  414 SREDQERISELEKELRALSKLAGES  438 (717)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhH
Confidence                  8999999999999998874

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=88.76  E-value=48  Score=37.68  Aligned_cols=154  Identities=19%  Similarity=0.241  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH---HHHHHhhHH
Q 007664          418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ---LALANKSKQ  494 (594)
Q Consensus       418 aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~---L~la~eS~s  494 (594)
                      .|..+...|+..+..|..+...+.-|+.-.+..+.........+..+.++-+...+.+..+++++.+.   |.....-..
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            34444444444444444444444444444444444444444444444444455555556666655433   333322222


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH-HHHHH
Q 007664          495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ-HEVKL  571 (594)
Q Consensus       495 ~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~  571 (594)
                      .....+..+......+-+..+.+..++...+..+.-+-.+++.=|+--.....||+....++.-.+.-..++ .++..
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~  439 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA  439 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222344455666666666667777777777777777777777777777788888888877777765444444 44443

Several sequences in this family are described as being myosin heavy chain-like.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=88.63  E-value=17  Score=38.66  Aligned_cols=88  Identities=17%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 007664          394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES  473 (594)
Q Consensus       394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEs  473 (594)
                      +.++|.+|+..+++|..|+-..+.-|.-+..-|..-+....+......-|++.....-++-..++..-.-+..+.+.=++
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~   95 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES   95 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence            56799999999999999998877777666666666666666666666666666555444444443333333333344455


Q ss_pred             hhhhHHHH
Q 007664          474 KLSVVEAE  481 (594)
Q Consensus       474 kl~~~eaE  481 (594)
                      +|+++++-
T Consensus        96 qv~~lEgQ  103 (307)
T PF10481_consen   96 QVNFLEGQ  103 (307)
T ss_pred             HHHHHHHH
Confidence            55555543

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.46  E-value=24  Score=33.91  Aligned_cols=110  Identities=24%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 007664          400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE  479 (594)
Q Consensus       400 eLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~e  479 (594)
                      ...+++..++.+++-++--.       ......|...+.....+-.+...+...+..+..++..+...+..|+.-|..+-
T Consensus         7 ~v~~kLK~~~~e~dsle~~v-------~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~   79 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHV-------ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR   79 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667776666555444       33334444444444455555556666667777777777777776666655555


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007664          480 AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAE  520 (594)
Q Consensus       480 aEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaE  520 (594)
                      .|.. .|.....-....+.+|+....+   +...|...+.+
T Consensus        80 sEk~-~L~k~lq~~q~kv~eLE~~~~~---~~~~l~~~E~e  116 (140)
T PF10473_consen   80 SEKE-NLDKELQKKQEKVSELESLNSS---LENLLQEKEQE  116 (140)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHH
Confidence            5533 2332223333445555544443   33445555554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=88.24  E-value=69  Score=38.88  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE  458 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e  458 (594)
                      .|+.+|-.++-+...|-.|+..||.+.+.+.|....++..+++-..-++-+-...+++|.|.+.....+.+++
T Consensus       334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3455556666677777778888888888888888888888888887777777778888888888777776664

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=87.63  E-value=33  Score=34.43  Aligned_cols=59  Identities=31%  Similarity=0.352  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664          398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA  456 (594)
Q Consensus       398 vaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~  456 (594)
                      |..|.+.+..|...-...++.+.++..++.....-|..++....+|+.+|.....-+..
T Consensus        29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~   87 (201)
T PF13851_consen   29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS   87 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555554455556667777777777778888888888888887775554444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.54  E-value=33  Score=34.40  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=19.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS  530 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s  530 (594)
                      -++-.-..+..++...+..+..|+..|..+|.-
T Consensus       157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555566666666666666666666643

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.41  E-value=34  Score=42.77  Aligned_cols=134  Identities=21%  Similarity=0.285  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV  470 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~  470 (594)
                      +.++.+++.+|+.++++|+-+.+.---+-..++..-...+.+.+.|++.+..||.+++.++.-   ++.+++...+.   
T Consensus      1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l---~~~r~~g~~~a--- 1687 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRL---LEKRMEGSQAA--- 1687 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcchhH---
Confidence            334444666666666666655544333334444445555666667777777777775555432   22222211111   


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664          471 AESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (594)
Q Consensus       471 lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI  535 (594)
                       -.|.+.+..|-.++|.-++.-.    .-|+-++..|..-+-+|....+++.-|...|.++-.-|
T Consensus      1688 -r~rAe~L~~eA~~Ll~~a~~kl----~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1688 -RERAEQLRTEAEKLLGQANEKL----DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence             1123335555555555554333    23444555666666666666666666665555554443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=87.35  E-value=63  Score=37.42  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA  467 (594)
Q Consensus       388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~  467 (594)
                      +--++......+.++.++.++..+..++..-+.+.+......+..+......+.++++++..++.-+..++.++..+...
T Consensus        98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e  177 (546)
T KOG0977|consen   98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE  177 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555677888888888888888888888888888888888888888899999999999999999988888887777


Q ss_pred             hhhhhhhhhhHHHHHHHH
Q 007664          468 RGVAESKLSVVEAEMKTQ  485 (594)
Q Consensus       468 ~~~lEskl~~~eaEik~~  485 (594)
                      ...|...|..+...+..+
T Consensus       178 n~rl~~~l~~~r~~ld~E  195 (546)
T KOG0977|consen  178 NSRLREELARARKQLDDE  195 (546)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            777777666655554444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=87.15  E-value=1e+02  Score=39.69  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664          510 AESRLRAVEAEMETLRSKVISLEDEVE  536 (594)
Q Consensus       510 lEsqLe~~EaEa~~L~~KV~sLE~EIe  536 (594)
                      |+..+......+..+..++..|+.++.
T Consensus       440 Le~~LenF~aklee~e~qL~elE~kL~  466 (1486)
T PRK04863        440 AEDWLEEFQAKEQEATEELLSLEQKLS  466 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=87.13  E-value=80  Score=38.38  Aligned_cols=68  Identities=15%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV  457 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~  457 (594)
                      ++-....|+..|+.+.-.+|.+|..|+-+...++.++......|.++..++.++--.|..--+.++.+
T Consensus       100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~  167 (1265)
T KOG0976|consen  100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI  167 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence            44455557777888877777777777777777776666666666666666666655555544444444

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=86.93  E-value=36  Score=34.15  Aligned_cols=123  Identities=24%  Similarity=0.329  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 007664           81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE  160 (594)
Q Consensus        81 ~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e  160 (594)
                      +|++.|.+.              ...+|.=-.+.|.-|+.       |=..||+=|-++|.--+..+..++++....- .
T Consensus         2 ~L~~~He~a--------------f~~iK~YYndIT~~NL~-------lIksLKeei~emkk~e~~~~k~m~ei~~eN~-~   59 (201)
T PF13851_consen    2 ELMKNHEKA--------------FQEIKNYYNDITLNNLE-------LIKSLKEEIAEMKKKEERNEKLMAEISQENK-R   59 (201)
T ss_pred             hHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            577888776              67788889999999997       6778999999999977777777777766543 3


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhh
Q 007664          161 WESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERD  227 (594)
Q Consensus       161 ~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere  227 (594)
                      +-.-=..++..+.+|+++|..-.....+  -..+..|+..++++...|+.|-.+|.--+.---.||+
T Consensus        60 L~epL~~a~~e~~eL~k~L~~y~kdK~~--L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd  124 (201)
T PF13851_consen   60 LSEPLKKAEEEVEELRKQLKNYEKDKQS--LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD  124 (201)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344566777777777654433322  2367889999999999999999998877776666665

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=86.77  E-value=98  Score=39.03  Aligned_cols=59  Identities=22%  Similarity=0.174  Sum_probs=25.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664          404 ELENMRAEKSELEMDLKESQ-RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK  462 (594)
Q Consensus       404 KleklEaEK~eLE~aL~~~~-~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve  462 (594)
                      ....++.....+.+..++++ .+....++...+.+.++.+...++..+.........+++
T Consensus       466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele  525 (1317)
T KOG0612|consen  466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE  525 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444 244444444444444444444444433333333333333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=86.69  E-value=31  Score=33.23  Aligned_cols=44  Identities=23%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 007664          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERA  540 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERa  540 (594)
                      .+.++.....++.+...+..+..+.......+..+...+...+.
T Consensus       129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~  172 (191)
T PF04156_consen  129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQE  172 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.32  E-value=74  Score=37.15  Aligned_cols=63  Identities=30%  Similarity=0.416  Sum_probs=48.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA  448 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~  448 (594)
                      +...+...-...+.+|+..+..+.....+++..+..++..+......+.+.+....+++.++.
T Consensus       318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~  380 (594)
T PF05667_consen  318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK  380 (594)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566777888889999999988888888888887777777777777777777777766643

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=86.15  E-value=69  Score=36.68  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             hHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhh
Q 007664          222 RIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK  263 (594)
Q Consensus       222 R~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK  263 (594)
                      -+.|.+|+.=.-=+.+=-|++.=.-+.+|+.+...|..++.+
T Consensus       175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~  216 (569)
T PRK04778        175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEE  216 (569)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555556666666666677777777777777665

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.60  E-value=1e+02  Score=38.17  Aligned_cols=147  Identities=18%  Similarity=0.273  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------H
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK-------A  463 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve-------~  463 (594)
                      +...+.+..+|++.|..+..+..+.-.....|.+++..-..+..........|...+..+++.+++++.-++       .
T Consensus       673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~  752 (1200)
T KOG0964|consen  673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEE  752 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Confidence            344566888888888888888888877788888888888888888888888999999999888888876655       6


Q ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHhhH------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHh
Q 007664          464 AIAARGVAESKLSVVEAEMKTQLALANKSK------------QAAEEEVKSAKSKKEAAESRLRAVEAEME-TLRSKVIS  530 (594)
Q Consensus       464 ~~~~~~~lEskl~~~eaEik~~L~la~eS~------------s~~~eeL~a~~a~kkelEsqLe~~EaEa~-~L~~KV~s  530 (594)
                      +...++.++++.+.+++|+...|.++....            ...-.+|.+...++..++.+.-.++++.. .|...+..
T Consensus       753 i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~  832 (1200)
T KOG0964|consen  753 IKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNE  832 (1200)
T ss_pred             HHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            667778999999999999998877665332            13334455555555555555555555543 35555555


Q ss_pred             hHHHHHH
Q 007664          531 LEDEVEK  537 (594)
Q Consensus       531 LE~EIek  537 (594)
                      |+.+|-.
T Consensus       833 l~~ei~~  839 (1200)
T KOG0964|consen  833 LEQEIGD  839 (1200)
T ss_pred             HHHHhhh
Confidence            5555544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.58  E-value=61  Score=40.00  Aligned_cols=150  Identities=21%  Similarity=0.255  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS  476 (594)
Q Consensus       397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~  476 (594)
                      -+--++++|..|+.||.+|+.-     .+++.-+.+|.=+     =.-..|+.+|+...+++.....+-.+-...-+.+.
T Consensus       192 ll~yieerLreLEeEKeeL~~Y-----qkldk~rr~lEYt-----iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~  261 (1200)
T KOG0964|consen  192 LLKYIEERLRELEEEKEELEKY-----QKLDKERRSLEYT-----IYDRELNEINGELERLEEDRSSAPEESEQYIDALD  261 (1200)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHH-----HHHHHhHhhhhhh-----hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3445677888888888776653     2444444444322     12234444555555555555544444444444444


Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHH
Q 007664          477 VVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL  556 (594)
Q Consensus       477 ~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeL  556 (594)
                      -+++++...=.    .-+.....|..+..++..+..+--.+-..-.+|..+|..|.++|.-.+..-.....-.+++++.+
T Consensus       262 ~~~d~~~~~~~----~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki  337 (1200)
T KOG0964|consen  262 KVEDESEDLKC----EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI  337 (1200)
T ss_pred             HHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            44444432100    01111222333333333333332223333444555566666666655544433444444444444


Q ss_pred             hhhh
Q 007664          557 SKVK  560 (594)
Q Consensus       557 sr~k  560 (594)
                      +.++
T Consensus       338 ~e~~  341 (1200)
T KOG0964|consen  338 EEKK  341 (1200)
T ss_pred             HHHH
Confidence            4443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=85.36  E-value=53  Score=34.67  Aligned_cols=13  Identities=31%  Similarity=0.432  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q 007664          397 RTAELEEELENMR  409 (594)
Q Consensus       397 qvaeLEeKleklE  409 (594)
                      +...++..+..++
T Consensus       138 ~~~~~~~~~~~l~  150 (423)
T TIGR01843       138 RKSTLRAQLELIL  150 (423)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.05  E-value=38  Score=32.67  Aligned_cols=38  Identities=32%  Similarity=0.511  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE  427 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle  427 (594)
                      ++.....++..++.++..+.....++...+...+..+.
T Consensus        82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~  119 (191)
T PF04156_consen   82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQ  119 (191)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555554444444444443333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=84.53  E-value=60  Score=34.58  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=14.5

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664          503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (594)
Q Consensus       503 ~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe  536 (594)
                      ...+...++.++..+...++.+..++.-+..+|.
T Consensus       228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  228 KKKELAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.35  E-value=91  Score=36.48  Aligned_cols=136  Identities=24%  Similarity=0.309  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHh
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVE---MKAAIAA  467 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~---ve~~~~~  467 (594)
                      -+..+..+..|+..+..++.+|..+=.-|...+.+++-++..|++...++.-|-.-++....-......+   =++-..+
T Consensus       313 sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~k  392 (772)
T KOG0999|consen  313 SELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEK  392 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccccccccc
Confidence            3456678889999999999999999999999999999999999887766655544433322111111100   0000000


Q ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHhhHHH
Q 007664          468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRL------RAVEAEMETLRSKVISLEDE  534 (594)
Q Consensus       468 ~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqL------e~~EaEa~~L~~KV~sLE~E  534 (594)
                      ..+.+..|.-++  |     ++.... ++..++.-+..+.+.+-+++      -..+.++..+..|+.+||.-
T Consensus       393 ad~~e~~l~a~e--~-----~a~k~~-~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~kl~lleka  457 (772)
T KOG0999|consen  393 ADLYEVDLNALE--I-----LACKYA-VAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEKLRLLEKA  457 (772)
T ss_pred             chhHHhhhhhHH--H-----HHHHHH-HHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHh
Confidence            011111111110  1     122222 34455555666666666653      34678888888898888765

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=83.21  E-value=1.2e+02  Score=37.08  Aligned_cols=88  Identities=19%  Similarity=0.320  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 007664          396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL  475 (594)
Q Consensus       396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl  475 (594)
                      .+...+.+|+..+..+..+|-..+...+.|++..+.....++.+..+|-.+|..+...-+.++.+.++.......++..+
T Consensus       424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El  503 (980)
T KOG0980|consen  424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL  503 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35666666677777788788777888888888777777777766666666666666666665555554444444444444


Q ss_pred             hhHHHHHH
Q 007664          476 SVVEAEMK  483 (594)
Q Consensus       476 ~~~eaEik  483 (594)
                      ..+..|+.
T Consensus       504 ~~l~~e~~  511 (980)
T KOG0980|consen  504 ALLLIELE  511 (980)
T ss_pred             HHHHHHHH
Confidence            44444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=82.67  E-value=69  Score=33.84  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=15.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAE  411 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaE  411 (594)
                      .+..++..+..++..++..+..+.+.
T Consensus        78 ~~~~~l~~l~~~~~~l~a~~~~l~~~  103 (423)
T TIGR01843        78 DVEADAAELESQVLRLEAEVARLRAE  103 (423)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666665554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.50  E-value=11  Score=37.16  Aligned_cols=20  Identities=15%  Similarity=0.249  Sum_probs=10.1

Q ss_pred             HHHHHHHHhhHHHHHHHHHH
Q 007664          497 EEEVKSAKSKKEAAESRLRA  516 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~  516 (594)
                      ++.+..++.+.+.|-.|...
T Consensus       164 e~k~~~l~~En~~Lv~Rwm~  183 (194)
T PF08614_consen  164 EEKLRKLEEENRELVERWMQ  183 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=82.27  E-value=1.4e+02  Score=37.14  Aligned_cols=60  Identities=22%  Similarity=0.246  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhh
Q 007664          494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV  559 (594)
Q Consensus       494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~  559 (594)
                      -...+++...  +|.++-|+.-.++.+-+.|+.|+.-||++|-...    ...++|++++--|..-
T Consensus       385 t~tleelqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~----qq~~eled~~K~L~~E  444 (1195)
T KOG4643|consen  385 TGTLEELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQLL----QQLAELEDLEKKLQFE  444 (1195)
T ss_pred             HHHHHHHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            3444555444  8999999999999999999999999999998654    4566777777665544

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=82.26  E-value=1.2e+02  Score=36.29  Aligned_cols=163  Identities=20%  Similarity=0.286  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----------hhh
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE-------LETQLAF----------ANK  452 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~E-------LQ~QL~~----------aN~  452 (594)
                      ++..+.+++..|++.|+.++......-+.|+.++...+..+.+|.-+...++-       |+.-.+.          -|.
T Consensus       163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~  242 (739)
T PF07111_consen  163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEP  242 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHH
Confidence            56667779999999999999999888999999999999888888766554432       1111111          145


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH---HHHHHh---------------hHHHHHHHHHHHHhhHHHHHHHH
Q 007664          453 SKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ---LALANK---------------SKQAAEEEVKSAKSKKEAAESRL  514 (594)
Q Consensus       453 sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~---L~la~e---------------S~s~~~eeL~a~~a~kkelEsqL  514 (594)
                      .+..+..-|.....++..|-.-+++++.=+..+   |.++.+               +..-...=|.+-..+.=.|-.||
T Consensus       243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQL  322 (739)
T PF07111_consen  243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQL  322 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            566777777777777766666666666544443   333321               11111122334466666677676


Q ss_pred             HHH----HHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHH
Q 007664          515 RAV----EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE  555 (594)
Q Consensus       515 e~~----EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEee  555 (594)
                      +.-    ...+..|+.+|.+||.++...   +.+...=-|.|++.
T Consensus       323 kaQeleh~~~~~qL~~qVAsLQeev~sq---~qEqaiLq~SLqDK  364 (739)
T PF07111_consen  323 KAQELEHRDSVKQLRGQVASLQEEVASQ---QQEQAILQHSLQDK  364 (739)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHH
Confidence            664    445677999999999999854   33333334444443

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=81.91  E-value=65  Score=32.99  Aligned_cols=39  Identities=31%  Similarity=0.392  Sum_probs=17.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe  536 (594)
                      ++++-+..+.++.+.+.+.++-=|..|-..|+-||..+.
T Consensus       144 ~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~  182 (205)
T KOG1003|consen  144 EELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE  182 (205)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence            344444444444444444444444444444444444433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=81.91  E-value=1.3e+02  Score=36.41  Aligned_cols=182  Identities=21%  Similarity=0.315  Sum_probs=82.5

Q ss_pred             hhhhhHhhHhHHHHHHHhhcccc-hHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 007664           57 VVNDSVKTLTEKLSAALLNVSAK-EDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC  135 (594)
Q Consensus        57 ~~~~~~k~LnekLs~al~~~~~K-d~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeC  135 (594)
                      -|...+.....||.+...+|..- -.-++.-..+..+       .-+++..++.||...-..+-.       +...+-.+
T Consensus        14 ~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rke-------e~a~l~~~k~qlr~~q~e~q~-------~~~ei~~L   79 (775)
T PF10174_consen   14 RLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKE-------EAAELSRLKEQLRVTQEENQK-------AQEEIQAL   79 (775)
T ss_pred             HHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHH-------HHHHHHhHHHHHHHHHhhHHH-------HHHHHHHH
Confidence            35566667778888888877541 1222222223222       234566677777655544443       33333333


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 007664          136 VRQLRQAREEQEQRIQETVSKQNLEWESKKSELE---SKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLEL  212 (594)
Q Consensus       136 mrQLr~~rEEqEqki~eav~kks~e~e~~~~elE---~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~  212 (594)
                      =-.||..++-.  +++.-+-+.+.+++.+.. ++   ..+..+.+..+.+..+.     ..|...++.++-.+..++.++
T Consensus        80 qeELr~q~e~~--rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El-----~~lr~~lE~~q~~~e~~q~~l  151 (775)
T PF10174_consen   80 QEELRAQRELN--RLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQREL-----ERLRKTLEELQLRIETQQQTL  151 (775)
T ss_pred             HHHHHHhhHHH--HHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            33332222211  233333333444444443 32   22222333333222222     233444444444444444444


Q ss_pred             HHHHhhhhHhHHhhh---hhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhc
Q 007664          213 LSLVKELELRIVERD---LSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA  264 (594)
Q Consensus       213 ~~l~kELeiR~~Ere---~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~  264 (594)
                      .....+++.-.+..+   .+.   ++..-+|. -.+-|+-+|+.|.+|..+.-.+
T Consensus       152 ~~~~eei~kL~e~L~~~g~~~---~~~~~~~~-~~~~~~~~e~~~~~le~lle~~  202 (775)
T PF10174_consen  152 DKADEEIEKLQEMLQSKGLSA---EAEEEDNE-ALRRIREAEARIMRLESLLERK  202 (775)
T ss_pred             HHHHHHHHHHHHHHhhcCCcc---cchhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443333221   111   22222222 3346889999999999877554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.75  E-value=68  Score=33.14  Aligned_cols=50  Identities=32%  Similarity=0.445  Sum_probs=27.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664          408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV  457 (594)
Q Consensus       408 lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~  457 (594)
                      .+-++.+|+.-|...+.+.+..+..|.+.+.....|..++..+......+
T Consensus         3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L   52 (246)
T PF00769_consen    3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL   52 (246)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666655555555555544444434333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=81.58  E-value=1.1e+02  Score=35.23  Aligned_cols=20  Identities=25%  Similarity=0.192  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHH
Q 007664          194 LCSKLEAAEKQNSALKLELL  213 (594)
Q Consensus       194 L~~rLes~EKen~sLkyE~~  213 (594)
                      +...|+.++.+...+.-+|.
T Consensus       110 ~~~~l~~~e~~~~~i~~~l~  129 (569)
T PRK04778        110 IESLLDLIEEDIEQILEELQ  129 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=81.44  E-value=79  Score=33.68  Aligned_cols=39  Identities=21%  Similarity=0.421  Sum_probs=19.4

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe  536 (594)
                      .+|..+..+.......+.....++..|..++..|..+|+
T Consensus       209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~  247 (325)
T PF08317_consen  209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE  247 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444555555555555555555555555544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=81.33  E-value=1e+02  Score=34.79  Aligned_cols=64  Identities=17%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF  449 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~  449 (594)
                      .+..+++.....+..-..+..+|+.+...++..+.....++-.+...+.+.+.++.++-..|+-
T Consensus        42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~  105 (420)
T COG4942          42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA  105 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            4555666655555555555555555555555555555555555555555555555554444444

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=80.82  E-value=66  Score=32.35  Aligned_cols=56  Identities=18%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhH
Q 007664          506 KKEAAESRLRAVEAEMETLRSKV----ISLEDEVEKERALSEENIANFQKSKDELSKVKQ  561 (594)
Q Consensus       506 ~kkelEsqLe~~EaEa~~L~~KV----~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~  561 (594)
                      +...++..+...+..+..|..++    .++-.++..|+--+.++...|..|..++.+..+
T Consensus       126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~  185 (194)
T PF15619_consen  126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ  185 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444    455677888888888999999999999888754

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.56  E-value=97  Score=37.66  Aligned_cols=53  Identities=17%  Similarity=0.190  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHH
Q 007664          510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE  562 (594)
Q Consensus       510 lEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e  562 (594)
                      +-+++......+..++.|+.+|++..+-|-.--+=..+|-.+|+-++..+++|
T Consensus       860 l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqe  912 (970)
T KOG0946|consen  860 LQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQE  912 (970)
T ss_pred             HHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhh
Confidence            34456666678889999999999887777444344445556666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	594
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	6e-09
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-06

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 77.1 bits (190), Expect = 7e-15
 Identities = 30/197 (15%), Positives = 73/197 (37%), Gaps = 13/197 (6%)

Query: 379  QPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAEL 438
            Q        K EL+ L          +E  +     LE  + + QR+++    + K    
Sbjct: 894  QCCYRRMMAKRELKKL----KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 439  KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK---TQLALANKSKQA 495
            K+  LE   +   +  ++    ++ +      A +++  ++ E+     +L      K+ 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 496  AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555
             EE     K + E   S L+     ++T + +   L   +  +     E +   +K  +E
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEE---LNRRIHDQAKEITETME--KKLVEE 1064

Query: 556  LSKVKQEIELQHEVKLQ 572
              +++ ++     ++ Q
Sbjct: 1065 TKQLELDLN-DERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 25/177 (14%), Positives = 63/177 (35%), Gaps = 18/177 (10%)

Query: 388  KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
                    +R    + EL+ ++ E   +E   K+    LE   N++ + + K++E   + 
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVER-YKKLHIGLE---NKIMQLQRKIDEQNKEY 944

Query: 448  AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKK 507
                +    +E+              +L + E E K     A     + +EE+   + + 
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN----ATNRVLSLQEEIAKLRKEL 1000

Query: 508  EAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
               ++  + +E   +  + +   L  E++++              K E  ++ + I 
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQN----------TLLKTEKEELNRRIH 1047

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 26/211 (12%), Positives = 77/211 (36%), Gaps = 6/211 (2%)

Query: 379  QPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAEL 438
            Q +      +      +     L+     M A++   +  LK   R +E  +      E 
Sbjct: 871  QKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK--LKIEARSVERYKKLHIGLEN 928

Query: 439  KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT---QLALANKSKQA 495
            K+ +L+ ++   NK  +++  +M            KL      ++    +   A     +
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988

Query: 496  AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANF-QKSKD 554
             +EE+   + +    ++  + +E   +  + +   L  E++++  L +       ++  D
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 555  ELSKVKQEIELQHEVKLQYLAGSNQELKINQ 585
            +  ++ + +E +   + + L     + ++  
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 84   KQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAR 143
            K  A+  E         EN++  L++++   +++  +L  ++++L+        +LR   
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 144  EEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAA------SADRDLCSK 197
            E      +E          ++   L+ ++  L+K+L   ++E             +    
Sbjct: 970  ERLRMSEEE-----AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 198  LEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRL 257
            +   ++QN+ LK E   L + +       D + +  ET  K+ +E  K+L +++    RL
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIH------DQAKEITETMEKKLVEETKQL-ELDLNDERL 1077

Query: 258  K 258
            +
Sbjct: 1078 R 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 17/151 (11%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            +  L  K+        +  + +                    L   +++ K A+ +  +L
Sbjct: 930  IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 122  ENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181
            +  ++ L   L +   + +   EE   + +    +   E + + + L+++  +L +++  
Sbjct: 990  QEEIAKLRKELHQTQTEKKTI-EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 182  AKSEAAASADRDLCSKLEAAEKQNSALKLEL 212
               E   + ++ L  + +  E   +  +L  
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 23/202 (11%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            ++  T  L A L     +        +     +    +         + LKA        
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 122  ENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181
               ++          R+L++ + E     +          +     LE+K++ LQ+K+  
Sbjct: 898  RRMMAK---------RELKKLKIEARSVERY---------KKLHIGLENKIMQLQRKIDE 939

Query: 182  AKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHL 241
               E      + L  K+   E   S    +L S V+ L +   E   +T    +  ++  
Sbjct: 940  QNKEY-----KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994

Query: 242  ESIKKLAKVEAECLRLKAVVRK 263
            +  K+L + + E   ++    K
Sbjct: 995  KLRKELHQTQTEKKTIEEWADK 1016

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 43   QSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAEN 102
            +      K   L+   +   + L   +    ++    ++   +   + EE      K   
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI----AKLRK 998

Query: 103  ELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWE 162
            EL   + + K   +     ++    L   LKE    L+  +EE  +RI +   +     E
Sbjct: 999  ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT---E 1055

Query: 163  SKKSELESKLVDLQKKLQTAKSE 185
            + + +L  +   L+  L   +  
Sbjct: 1056 TMEKKLVEETKQLELDLNDERLR 1078

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 35/184 (19%), Positives = 75/184 (40%), Gaps = 7/184 (3%)

Query: 397  RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456
            R+ +L+ E + M+ +  +LE  L+E +   +  Q +   A+ K++++E  +         
Sbjct: 942  RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 457  VEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQA---AEEEVKSAKSKKEAAESR 513
            +  E K          + L+  E + K    L NK +      E  +K  +  ++  E  
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 514  LRAVEAEMETLRSKVISLEDEV----EKERALSEENIANFQKSKDELSKVKQEIELQHEV 569
             R +E E   L  ++  L+ ++     +     EE  A   + +DE S+    ++   E+
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 570  KLQY 573
            +   
Sbjct: 1122 ESHI 1125

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 11/194 (5%)

Query: 387  IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL-------KEAELK 439
            ++ +L+      AE EE    + A+K ELE  L E + R+E  + +        K+ + +
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 440  LEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEE 499
            + +LE QL     ++Q +++E   A       E  +      M+ Q     K ++  EE 
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI----LIMEDQNNKLTKERKLLEER 1012

Query: 500  VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
            V    +     E + + +        S +  LE  ++KE    +E     +K + E S +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 560  KQEIELQHEVKLQY 573
             ++I        + 
Sbjct: 1073 HEQIAELQAQIAEL 1086

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 38/197 (19%), Positives = 81/197 (41%), Gaps = 10/197 (5%)

Query: 378  DQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437
            ++  A    ++ E      +  ++E+++  M  + ++L  + K  + R+      L E E
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 438  LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE----------MKTQLA 487
             K + L             +EV +K    +R   E     +E E          ++ Q+A
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 488  LANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA 547
                     EEE+++A ++ E   S+      ++  L S +  L++++E E+A   +   
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 548  NFQKSKDELSKVKQEIE 564
              +   +EL  +K E+E
Sbjct: 1145 QKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 34/189 (17%), Positives = 78/189 (41%), Gaps = 10/189 (5%)

Query: 381  NADESSIKAELEVLIHRTAELEEELENMRAEKSELEM---DLKESQRRLETSQNQLKEAE 437
              +   ++  +  L    AE EE+ +N+   K++ E    +L+   ++ E S+ +L++ +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062

Query: 438  LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAE 497
             KLE   + L       QA   E+KA +A +   E +L         +L      K  A 
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKK---EEELQ----AALARLEDETSQKNNAL 1115

Query: 498  EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS 557
            ++++  +S     +  L + +A       +   L +E+E  +   E+ +      ++   
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 558  KVKQEIELQ 566
               ++ + +
Sbjct: 1176 SDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            +  +  ++          +   K+  +   +     E+ E     L+ +   A  K   +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 122  ENRVSHLDG----------ALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESK 171
            E+ +  ++            L+E V  L     E+E++ +  ++K   + ES  SELE +
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHESMISELEVR 1047

Query: 172  LVDLQKK---LQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDL 228
            L   +K    L+  K +    +  DL  ++   + Q + LK +L    +EL+  +   + 
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 229  STKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA 264
             T     A K+  E    ++ ++ +    KA   KA
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 10/198 (5%)

Query: 28   SSLSERFSDDQTHSSQSSEATSKAPPLDEVVND---SVKTLTEKLSAALLNVSAKEDLVK 84
            ++  +   +  T   +  +       +++  N      K L E++S    N++ +E+  K
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 85   QHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQARE 144
               K+  +  S   + E  L   ++  +   +    LE   S L   + E   Q+ + + 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 145  EQEQRIQE-TVSKQNLEWE-SKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAE 202
            +  ++ +E   +   LE E S+K+    K+ +L+  +   + +  +       +    AE
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK-----AARNKAE 1143

Query: 203  KQNSALKLELLSLVKELE 220
            KQ   L  EL +L  ELE
Sbjct: 1144 KQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 30/203 (14%), Positives = 79/203 (38%), Gaps = 7/203 (3%)

Query: 63   KTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALE 122
              L EKL A     +  E++  + A   +E      + E  +   +++ +    +   ++
Sbjct: 895  NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954

Query: 123  NRVSHLDGALKECVRQLRQAREEQEQRIQ--ETVSKQNLEWESKKSELESKLVDLQKKLQ 180
             ++  L+  L+E     ++ + E+       + +    L  E + ++L  +   L++++ 
Sbjct: 955  QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 181  TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
               +  A   +     K +   K  +  +  +  L   L+     R    K       + 
Sbjct: 1015 DLTTNLAEEEE-----KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 241  LESIKKLAKVEAECLRLKAVVRK 263
             +  +++A+++A+   LKA + K
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAK 1092

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 40/347 (11%), Positives = 127/347 (36%), Gaps = 63/347 (18%)

Query: 98   EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157
             +   E + L+++L+A ++  +  E     L     +         E + +  +E   ++
Sbjct: 888  TQLCEEKNLLQEKLQAETELYAEAEEMRVRL---AAKKQELEEILHEMEARIEEEE--ER 942

Query: 158  NLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVK 217
            + + +++K +++ +++DL+++L+  ++              +  + +      ++  +  
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAA------------RQKLQLEKVTADGKIKKMED 990

Query: 218  ELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSS 277
            ++ +   + +  TK  +   ++  +    LA+ E +   L  +  K              
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH------------- 1037

Query: 278  IYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGR 337
                   +S     E  L  E  + +  +    + E       +S L  +  +       
Sbjct: 1038 -------ESMISELEVRLKKEEKSRQELEKIKRKLE-----GESSDLHEQIAE------- 1078

Query: 338  NVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHR 397
                      L     E++   A  + E ++    +    +   + +++   ++  L   
Sbjct: 1079 ----------LQAQIAELKAQLAKKEEELQAALARL----EDETSQKNNALKKIRELESH 1124

Query: 398  TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
             ++L+E+LE+ +A +++ E   ++    LE  + +L++        +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 26   SVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQ 85
             +  + ++ +          E  S          +  K LT+  +     +S  E  +K+
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

Query: 86   HAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQARE- 144
              K  +E      K E E S L +Q+     + + L+ +++  +  L+  + +L      
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110

Query: 145  ---------EQEQRIQ------ETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAAS 189
                     E E  I       E+      + E +K +L  +L  L+ +L+      A  
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

Query: 190  ADRDLCSKLEAAEK 203
             +       +  +K
Sbjct: 1171 QELRGSDYKDDDDK 1184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 68/507 (13%), Positives = 157/507 (30%), Gaps = 127/507 (25%)

Query: 139 LRQAREEQEQRIQETVSKQNLEW-------ESKKSELESKL-VDLQKKLQTAKSEAAASA 190
           L   +EE  Q+  E V + N ++       E ++  + +++ ++ + +L           
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------- 121

Query: 191 DRDLCSKLEAA-EKQNSALKLELLSLVKELELRIVERDL----STKAAETASKQHLE--- 242
           D  + +K   +  +    L+  LL L     + +++  L    +  A +      ++   
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 243 -------SIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLL 295
                  ++K     E     L+ ++ +  PN  ++S   S+I +     S      RLL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLL 238

Query: 296 GNET--------DNCKISDSEV-----NECEPNSSTSWASALAIEPDKNVKAVGRNVMVP 342
            ++          N  + +++        C+          L     K V          
Sbjct: 239 KSKPYENCLLVLLN--VQNAKAWNAFNLSCK---------ILLTTRFKQV--------TD 279

Query: 343 SVDINLMDDFLEMERLAALPDTESRSF---CVEVGPASDQPNADE------SSIKAELEV 393
            +                L   E +S     ++  P               S I   +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS 453
            +          +N +       ++  +    +E+S N L+ AE +  ++  +L+    S
Sbjct: 340 GLAT-------WDNWK------HVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPS 384

Query: 454 KQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR 513
                +               LS++  ++               +  K +  +K+  ES 
Sbjct: 385 ---AHIPTIL-----------LSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQPKEST 425

Query: 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE---LQHEVK 570
           +      +E L+ K   LE+E    R++ +    N  K+ D    +   ++     H   
Sbjct: 426 ISIPSIYLE-LKVK---LENEYALHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSH--- 476

Query: 571 LQY-LAGSNQELKINQVSG----LSFM 592
           + + L       ++           F+
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFL 503

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 6e-10
 Identities = 56/373 (15%), Positives = 107/373 (28%), Gaps = 107/373 (28%)

Query: 39  THSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAAL----LNVSAKEDLVKQHAKVAEEAV 94
           T   Q ++  S A      ++    TLT     +L    L+    +DL ++        +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRL 330

Query: 95  SG-WEKAENELSTLKQQLKAASQK-NSALENRVSHLDGA-LKECVRQLRQAREEQEQRIQ 151
           S   E   + L+T          K  + +E+ ++ L+ A  ++   +L          I 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIP 388

Query: 152 ETVSKQNLE--W-ESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAL 208
             +    L   W +  KS++   +  L K                        EKQ    
Sbjct: 389 TIL----LSLIWFDVIKSDVMVVVNKLHKYS--------------------LVEKQPKES 424

Query: 209 KLELLSL----------VKELELRIVERDLSTKAAETASKQ--------------HLESI 244
            + + S+             L   IV+     K  ++                  HL++I
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 245 KKLAKVEAECLR--------LKAVVRKASPNTENKSFTPSSI-----YVGSFTDSQSDNG 291
           +   ++     R        L+  +R  S          +++     Y     D+     
Sbjct: 485 EHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY- 541

Query: 292 ERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDD 351
           ERL+    D        + + E N        L      ++           + I LM +
Sbjct: 542 ERLVNAILDF-------LPKIEEN--------LICSKYTDL-----------LRIALMAE 575

Query: 352 ----FLEMERLAA 360
               F E  +   
Sbjct: 576 DEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 90/593 (15%), Positives = 167/593 (28%), Gaps = 172/593 (29%)

Query: 54  LDEVVND-SVKTLTEKLSAALLNVSAKE--DLVKQHAKVAEEAVSGWEKAENELSTLKQQ 110
            D  V++   K + +   + L   S +E   ++     V                TL  +
Sbjct: 26  EDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAV--------SGTLRLFWTLLSK 74

Query: 111 LKAASQK--NSALENRVSHLDGALKECVRQ---LRQAREEQEQRIQETV---SKQNLEWE 162
            +   QK     L      L   +K   RQ   + +   EQ  R+       +K N+   
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 163 SKKSELESKLVDLQKK----LQ----TAKSEAAASADRD---LCSK------LEAAEKQN 205
               +L   L++L+      +     + K+  A          C        L      +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 206 SALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKK------LAKVEAECL---- 255
               LE+L   ++L  +I     S     +  K  + SI+        +K    CL    
Sbjct: 195 PETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 256 ---------------------RLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERL 294
                                R K V    S  T          +  + T  +    + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEV---KSL 306

Query: 295 LGNETDNCKISD--SEVNECEPNSSTSWASALAIEPD--KNVKAVG----RNVMVPSVDI 346
           L     +C+  D   EV    P   +  A ++        N K V       ++  S+++
Sbjct: 307 LLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 347 NLMDDFLEM-ERLAALPD-------------TESRSFCVEV--------GPASDQPNADE 384
               ++ +M +RL+  P               +     V V             QP    
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 385 SSI---------KAELEVLIHR-----------------------------------TAE 400
            SI         K E E  +HR                                     E
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 401 LEEELENMRAEKSELEMDLKESQRRLE---TSQNQLKEAELKLEELETQLAFANKSKQAV 457
             E +   R     + +D +  ++++    T+ N        L++L+    +   +    
Sbjct: 486 HPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 458 EVEMKAAI-----AARGVAESK-LSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
           E  + A +         +  SK   ++      ++AL  + +   EE  K  +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLL------RIALMAEDEAIFEEAHKQVQ 588

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 58.4 bits (141), Expect = 6e-09
 Identities = 32/171 (18%), Positives = 69/171 (40%), Gaps = 11/171 (6%)

Query: 400  ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEV 459
            +   ++  +  EK +    L+E Q  L     +L++ E ++++L+  LA      +  E+
Sbjct: 1899 DFINQVVLLINEKRD---QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ-----KNREL 1950

Query: 460  EMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEA 519
            ++K   A + + +       AE+K     A + +   +   K    +K  A + L   E 
Sbjct: 1951 DVKNEQANQKLKQMVQDQQAAEIKQ--KDARELQVQLDVRNKEIAVQKVKAYADLEKAEP 2008

Query: 520  EMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVK 570
                LR +V  LE+   + +   +E +A     +  ++  K+E        
Sbjct: 2009 TGP-LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 23/139 (16%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 399  AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
             +L+  L        EL++  +++ ++L+      + AE+K ++       A + +  ++
Sbjct: 1937 KDLQVSLAQK---NRELDVKNEQANQKLKQMVQDQQAAEIKQKD-------ARELQVQLD 1986

Query: 459  VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            V  K     +  A + L   E     +  +        E      K K++   + + A+E
Sbjct: 1987 VRNKEIAVQKVKAYADLEKAEPTGPLREEVE-----QLENAANELKLKQDEIVATITALE 2041

Query: 519  AEMETLRSKVISLEDEVEK 537
              + T + +  +L  E E+
Sbjct: 2042 KSIATYKEEYATLIRETEQ 2060

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 7/221 (3%)

Query: 349 MDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENM 408
           M +    +        +   F       S         +       + R+ +L  E+   
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667

Query: 409 RAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468
             E +      +  Q      + Q    + + E+   +L        AVE    A   A 
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727

Query: 469 GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKV 528
             AE+     E  +      A       E E++  K  +E      RA + E+E  +++ 
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA-QLELEVSKAQ- 785

Query: 529 ISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV 569
                 VE ++    + +                 E+Q ++
Sbjct: 786 --QLANVEAKKF---KEMTEALGPGTIRDLAVAGPEMQVKL 821

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	594
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.96
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	97.82
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.8
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.74
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.29
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.06
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.62
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	95.6
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.55
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.03
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	95.01
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	94.77
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.83
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.2
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.76
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.41
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.02
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.81
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.07
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	89.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.2
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	88.82
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	88.41
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.36
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	86.34
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	85.41
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	83.84
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	82.32
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.83
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.48
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	80.37

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.96  E-value=0.0095  Score=55.15  Aligned_cols=91  Identities=20%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~  465 (594)
                      .+..+++.+..++..++.++..+......++..+..+...+......+..+...+..++.++..+......++.++..+.
T Consensus        10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (284)
T 1c1g_A           10 MLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLN   89 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777666666666666666666666655555555555544


Q ss_pred             Hhhhhhhhhhh
Q 007664          466 AARGVAESKLS  476 (594)
Q Consensus       466 ~~~~~lEskl~  476 (594)
                      .....+...+.
T Consensus        90 ~~~~~~~~~~~  100 (284)
T 1c1g_A           90 RRIQLFEEELD  100 (284)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444433333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=97.82  E-value=0.02  Score=52.99  Aligned_cols=92  Identities=20%  Similarity=0.219  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG  469 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~  469 (594)
                      .+..+..++..+...+..+..+...++..+......+......+..+...+..++.++..+......+...+..+.....
T Consensus         7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (284)
T 1c1g_A            7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA   86 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             hhhhhhhhHHHH
Q 007664          470 VAESKLSVVEAE  481 (594)
Q Consensus       470 ~lEskl~~~eaE  481 (594)
                      .+..++..+..+
T Consensus        87 ~~~~~~~~~~~~   98 (284)
T 1c1g_A           87 SLNRRIQLFEEE   98 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.80  E-value=0.32  Score=48.04  Aligned_cols=60  Identities=8%  Similarity=0.118  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA  450 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a  450 (594)
                      +..+..++..|+..+..+......+...+.....++......+..+..++...+.+|+.+
T Consensus        27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v   86 (256)
T 3na7_A           27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            333334444444444444444444444444445555555555555555555555555554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.74  E-value=0.22  Score=48.26  Aligned_cols=157  Identities=18%  Similarity=0.259  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 007664          392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVA  471 (594)
Q Consensus       392 E~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~l  471 (594)
                      ..+.+++..++..|......=.+||..|-   .+|..+..+...+..++.-|..+++.....-...          ..+.
T Consensus        20 ~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~----------~~e~   86 (189)
T 2v71_A           20 MKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ----------YAQS   86 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence            33344444444444433333333443332   3344444444444444444444433333322222          1223


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHH
Q 007664          472 ESKLSVVEAEMKTQLALANKSKQ----AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA  547 (594)
Q Consensus       472 Eskl~~~eaEik~~L~la~eS~s----~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~a  547 (594)
                      ...+..++.||..+.. .+..-.    ..+..-+-++...+...+-+.+++.-......++.+||.+++ ||   ..+..
T Consensus        87 ~~~~~~Lq~el~~l~~-~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~-EK---e~l~~  161 (189)
T 2v71_A           87 YKQVSVLEDDLSQTRA-IKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD-EK---ESLLV  161 (189)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHC
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHH
Confidence            3345556666554332 222222    334444556788888999999999999999999999999998 44   46788


Q ss_pred             HhHHHHHHHhhhhHHHHHH
Q 007664          548 NFQKSKDELSKVKQEIELQ  566 (594)
Q Consensus       548 KC~~LEeeLsr~k~e~e~~  566 (594)
                      .|+-|.+++.-.++|+.+.
T Consensus       162 ~~QRLkdE~rDLk~El~v~  180 (189)
T 2v71_A          162 SVQRLKDEARDLRQELAVR  180 (189)
T ss_dssp             CC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8889999988888665543

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.29  E-value=0.017  Score=68.36  Aligned_cols=9  Identities=44%  Similarity=0.859  Sum_probs=6.9

Q ss_pred             HHHHHHHHH
Q 007664          247 LAKVEAECL  255 (594)
Q Consensus       247 iakLEaECq  255 (594)
                      ++-|+.||.
T Consensus       537 l~lLdee~~  545 (1184)
T 1i84_S          537 LALLDEECW  545 (1184)
T ss_dssp             HHHHHHTTS
T ss_pred             hhhhhhhhC
Confidence            577888885

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.06  E-value=0.016  Score=68.40  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=8.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 007664          390 ELEVLIHRTAELEEELENMRA  410 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEa  410 (594)
                      ++..+..++..++.++..++.
T Consensus       858 El~~L~~eL~el~~~L~~le~  878 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEA  878 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444433333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.62  E-value=1.5  Score=41.24  Aligned_cols=58  Identities=26%  Similarity=0.394  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhh
Q 007664          494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK  558 (594)
Q Consensus       494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr  558 (594)
                      ..|..+++.+..+.++.+.|.+.++.-+..|...|.-||+++..++.       ++..+.++|-.
T Consensus        73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke-------k~~~i~~eLd~  130 (155)
T 2efr_A           73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL-------KYKAISEEMKQ  130 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            46888899999999999999999999999999999999999997753       44444444443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=95.60  E-value=0.026  Score=49.84  Aligned_cols=71  Identities=27%  Similarity=0.357  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhhhh----------HHHHHhHHhHHhHHHHHHHHHHHHHHHHHH
Q 007664          192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTK----------AAETASKQHLESIKKLAKVEAECLRLKAVV  261 (594)
Q Consensus       192 ~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s~~----------aae~a~KQhlEsvKKiakLEaECqRLr~l~  261 (594)
                      ..|..++++++.||..|+-++..|.=+|+=|+.--+|+..          =|..|..|+-   +.|.+|.+||.|||..+
T Consensus        15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~---~~~e~Lq~E~erLr~~v   91 (100)
T 1go4_E           15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLR---EDHSQLQAECERLRGLL   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988887788652          2444544443   77899999999999999


Q ss_pred             hhcC
Q 007664          262 RKAS  265 (594)
Q Consensus       262 rK~l  265 (594)
                      |+--
T Consensus        92 ~~lE   95 (100)
T 1go4_E           92 RAME   95 (100)
T ss_dssp             TTCC
T ss_pred             HHHh
Confidence            8743

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.55  E-value=2.1  Score=42.26  Aligned_cols=31  Identities=13%  Similarity=0.151  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664          397 RTAELEEELENMRAEKSELEMDLKESQRRLE  427 (594)
Q Consensus       397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle  427 (594)
                      ++..|...+..+-.+...++..+...+..+.
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~   49 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAIL   49 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.03  E-value=2.1  Score=56.04  Aligned_cols=63  Identities=17%  Similarity=0.363  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV  457 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~  457 (594)
                      |+.+..=...|.+|-..+...+.-++.-|    .+|..+..++.+++.+|.++|-+|...+..-..+
T Consensus      1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL----~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A         1898 LDFINQVVLLINEKRDQLEEEQLHLNIGL----KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444556666666666666666666    3667777777777777777777777665554444

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=95.01  E-value=2.3  Score=40.69  Aligned_cols=135  Identities=21%  Similarity=0.291  Sum_probs=87.7

Q ss_pred             hhhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 007664           58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVR  137 (594)
Q Consensus        58 ~~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmr  137 (594)
                      ++.++..+|+||-+-                  -|++.-|-|..+|+..-.++++.   .+..+.++++.|..+--.-=+
T Consensus        11 LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~~~~E~---~~rELq~~~~~L~~~k~~Lek   69 (168)
T 3o0z_A           11 LQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSISQLES---LNRELQERNRILENSKSQTDK   69 (168)
T ss_dssp             THHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            678899999998654                  57788899999998877777774   445566777777766444333


Q ss_pred             HHHH--hhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhh-h-hhhHHHHHHHHHHHHhhhhhh----
Q 007664          138 QLRQ--AREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAA-A-SADRDLCSKLEAAEKQNSALK----  209 (594)
Q Consensus       138 QLr~--~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~-a-~~~~~L~~rLes~EKen~sLk----  209 (594)
                      ++-.  +.=++|++-.---       .-+..+|+.++.-|...|...+.--. + .....|..|+-.+||+.+++-    
T Consensus        70 e~~~LQa~L~qEr~~r~q~-------se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~  142 (168)
T 3o0z_A           70 DYYQLQAILEAERRDRGHD-------SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN  142 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3332  2222333222111       22335667777777666665543221 1 223689999999999999999    


Q ss_pred             HHHHHHHhhhh
Q 007664          210 LELLSLVKELE  220 (594)
Q Consensus       210 yE~~~l~kELe  220 (594)
                      |+|.+++--++
T Consensus       143 ~eLKalQ~~~e  153 (168)
T 3o0z_A          143 YKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88988876554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=94.77  E-value=0.86  Score=39.68  Aligned_cols=38  Identities=24%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E  534 (594)
                      .+.|.....+....+.....+++++..|..+|-+||++
T Consensus        64 ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe  101 (101)
T 3u1c_A           64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34455556666667778888999999999999999863

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.83  E-value=0.95  Score=39.40  Aligned_cols=87  Identities=17%  Similarity=0.283  Sum_probs=45.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~  465 (594)
                      .++.|.+.++.+...++.++...+......+-.+...+..+......|.-++..|.+.+..|+........+       +
T Consensus        13 ~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a-------E   85 (101)
T 3u1c_A           13 MLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA-------E   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence            456666666666666666666665555555555555555555555555544444444444444443333333       3


Q ss_pred             HhhhhhhhhhhhHH
Q 007664          466 AARGVAESKLSVVE  479 (594)
Q Consensus       466 ~~~~~lEskl~~~e  479 (594)
                      +...-|.+|+.+++
T Consensus        86 ~ev~~L~RriqllE   99 (101)
T 3u1c_A           86 SEVASLNRRIQLVE   99 (101)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            33333455555444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.65  E-value=4.8  Score=37.88  Aligned_cols=38  Identities=34%  Similarity=0.442  Sum_probs=19.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI  535 (594)
                      ..|.+...+++.+...|..+=.++..+..+..-|+.+|
T Consensus       112 d~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~  149 (155)
T 2efr_A          112 DELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV  149 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            34444444555555555555555555555555554444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.20  E-value=1.6  Score=51.63  Aligned_cols=27  Identities=11%  Similarity=0.227  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664          509 AAESRLRAVEAEMETLRSKVISLEDEV  535 (594)
Q Consensus       509 elEsqLe~~EaEa~~L~~KV~sLE~EI  535 (594)
                      .|+.++..++.|...|+..++-|+..|
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666666666666433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.76  E-value=5.3  Score=35.87  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007664          389 AELEVLIHRTAELEEELENMRAEKSELEMD  418 (594)
Q Consensus       389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~a  418 (594)
                      .|+..+..++..|.+++.+.+..+.+++..
T Consensus        13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~   42 (129)
T 2fxo_A           13 KEMASMKEEFTRLKEALEKSEARRKELEEK   42 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556666666666555555444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.41  E-value=3.1  Score=35.99  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=54.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA  463 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~  463 (594)
                      .++.|.+.+..+...++.++...+......+-.+...+..+......+..++..+.+.+..|+........++.+|.+
T Consensus        13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas   90 (101)
T 3u59_A           13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888888887777777777777777777777777777777777777776666665555544444444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.02  E-value=4.2  Score=35.13  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV  470 (594)
Q Consensus       391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~  470 (594)
                      +..+..+......+++.++......+.........+...++.+.-++..+...+.+|..++......+-....+++...-
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas   90 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS   90 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444443333333333333333333


Q ss_pred             hhhhhh
Q 007664          471 AESKLS  476 (594)
Q Consensus       471 lEskl~  476 (594)
                      |.+|+.
T Consensus        91 LnRriq   96 (101)
T 3u59_A           91 LNRRIQ   96 (101)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.81  E-value=3.3  Score=49.01  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=0.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664          434 KEAELKLEELETQLAFANKSKQAVEVEM  461 (594)
Q Consensus       434 ~Eae~kL~ELQ~QL~~aN~sk~~~e~~v  461 (594)
                      ..++.++.+||..|+..++.+..+..++
T Consensus       924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~  951 (1080)
T 2dfs_A          924 IGLENKIMQLQRKIDEQNKEYKSLLEKM  951 (1080)
T ss_dssp             ---------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777776666655554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.07  E-value=14  Score=35.39  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664          498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (594)
Q Consensus       498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E  534 (594)
                      ..+..+..+.+.+..++..+..+...|..+|..||.+
T Consensus        97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe  133 (168)
T 3o0z_A           97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE  133 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555566777777888888888888888776

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=89.59  E-value=8.1  Score=35.86  Aligned_cols=93  Identities=26%  Similarity=0.341  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHH
Q 007664          417 MDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAA  496 (594)
Q Consensus       417 ~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~  496 (594)
                      ++..++.+-.....++-..-+.++..|..||..+...-..       +..+..+...||..++++               
T Consensus        31 k~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aee-------adrKyeE~~RKl~~~E~d---------------   88 (147)
T 2b9c_A           31 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED-------ADRKYEEVARKLVIIESD---------------   88 (147)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHH---------------
Confidence            3344444444445555555566666666665554443333       233333444444444444               


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (594)
Q Consensus       497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E  534 (594)
                         |.+....-..+++++..++.++..+.+.+.+||.-
T Consensus        89 ---LeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~  123 (147)
T 2b9c_A           89 ---LERAEERAELSEGKCAELEEELKTVTNNLKSLEDK  123 (147)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence               22333344445666666666666666777776643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.20  E-value=6.4  Score=42.06  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007664          397 RTAELEEELENMRAEKSELEMDLKESQ  423 (594)
Q Consensus       397 qvaeLEeKleklEaEK~eLE~aL~~~~  423 (594)
                      .+..++.++.+++.+....+..+...+
T Consensus       457 e~~~~~~~i~~l~~~~~~~~~~l~~~~  483 (597)
T 3oja_B          457 EVNELRAEVQQLTNEQIQQEQLLQGLH  483 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=88.82  E-value=19  Score=47.57  Aligned_cols=65  Identities=18%  Similarity=0.241  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV  457 (594)
Q Consensus       390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~  457 (594)
                      |+...+.++.-=-.||.......++|+..|...+-+|+....   +++..|.++..+-..|+..+..+
T Consensus      1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~---ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A         1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE---QANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433333344555555666666666666666665543   44555666666655565555433

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=88.41  E-value=6.5  Score=36.47  Aligned_cols=54  Identities=20%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 007664          422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM  482 (594)
Q Consensus       422 ~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEi  482 (594)
                      ...+|...++...+++.+..|....|..+.+....       ++.+...+++++.-++.++
T Consensus        57 lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer-------aeeRae~aE~k~~eLEeeL  110 (147)
T 2b9c_A           57 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER-------AEERAELSEGKCAELEEEL  110 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            33444555555555666666655554444444444       4444444444444444443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.36  E-value=11  Score=33.22  Aligned_cols=67  Identities=18%  Similarity=0.255  Sum_probs=53.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 007664          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL-AFANK  452 (594)
Q Consensus       386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL-~~aN~  452 (594)
                      |+..+++.++.++..|+..+..++.++..|...|.+-+..-.........++..|++|...| +.||.
T Consensus         2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~   69 (97)
T 2eqb_B            2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN   69 (97)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999999998898888877777788888888888888775 22444

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=86.34  E-value=18  Score=32.39  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 007664          402 EEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE  479 (594)
Q Consensus       402 EeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~e  479 (594)
                      +..+.+++.+...+...|................+.+..+.|+.||+.-.+.-..++..+........+|+++|.-+.
T Consensus        12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~   89 (129)
T 2fxo_A           12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN   89 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444455444444444444444555667777777777666555555555555555555555444443

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=85.41  E-value=9.1  Score=31.77  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 007664          388 KAELEVLIHRTAELEEELENMR  409 (594)
Q Consensus       388 ~~ElE~~~~qvaeLEeKleklE  409 (594)
                      +.|.+.+..+...++.+++..+
T Consensus        12 k~e~d~a~~~~~~~e~~l~~~e   33 (81)
T 1ic2_A           12 KLDKENALDRAEQAEADKKAAE   33 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444433333

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=82.32  E-value=13  Score=30.78  Aligned_cols=46  Identities=11%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          401 LEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ  446 (594)
Q Consensus       401 LEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q  446 (594)
                      +..|+..|+.+++...-.+..++.++.....+...++..+..|+..
T Consensus         4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK   49 (81)
T 1ic2_A            4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK   49 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4556666666655444444444444444444444444444444444

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.83  E-value=9.8  Score=35.85  Aligned_cols=98  Identities=18%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhH
Q 007664          165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESI  244 (594)
Q Consensus       165 ~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsv  244 (594)
                      |..+|+++.++....-.+...|.++.+.++...+..+++++..|+-.+..+..+|.-++.--+. .+..=.+-.-|+..+
T Consensus        37 Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~-l~DEl~aLqlq~n~l  115 (152)
T 3a7p_A           37 RNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTER-LNAALISGTIENNVL  115 (152)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            5677888888877776666665555556666677777777777776666666665555433222 222223344444444


Q ss_pred             -HHHHHHHHHHHHH--HHHHhh
Q 007664          245 -KKLAKVEAECLRL--KAVVRK  263 (594)
Q Consensus       245 -KKiakLEaECqRL--r~l~rK  263 (594)
                       .|+.+|++|=+.|  |-|.||
T Consensus       116 E~kl~kLq~EN~~LV~RWM~rk  137 (152)
T 3a7p_A          116 QQKLSDLKKEHSQLVARWLKKT  137 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             7899999998766  445444

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.48  E-value=15  Score=33.74  Aligned_cols=59  Identities=20%  Similarity=0.269  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET  445 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~  445 (594)
                      +-.|+-.++.+...|+..++.+..|...|...|...+.+++.....+.++..+..+||.
T Consensus        66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~  124 (138)
T 3hnw_A           66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK  124 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555555554444444444444444444443333333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=80.37  E-value=32  Score=30.77  Aligned_cols=87  Identities=26%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664          387 IKAELEVLIHRTAELEEELENMRAE----KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK  462 (594)
Q Consensus       387 l~~ElE~~~~qvaeLEeKleklEaE----K~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve  462 (594)
                      |.....-+...+..+..|+.....+    ...|+..+...+...+..+..++++++.-.+|.++--.+..|...++.++.
T Consensus         8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n   87 (111)
T 2v66_B            8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN   87 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence            4444555555666666666665543    445777777777777777777888888888888887777777777777777


Q ss_pred             HHHHhhhhhhh
Q 007664          463 AAIAARGVAES  473 (594)
Q Consensus       463 ~~~~~~~~lEs  473 (594)
                      .++++..-||+
T Consensus        88 ~aiErnalLE~   98 (111)
T 2v66_B           88 QAIERNAFLES   98 (111)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00