Citrus Sinensis ID: 007667


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
MEPVLIESNVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSNALVAANGGAGSSGEKNNVFRNLEQQAEERHLRIIGARQAALSAAASESAPARSKHRSDDEYDEDSDADVAAAENGKAEEPKKPKQKKPKKPKITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQPSI
cccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccc
ccccEEEEEEcccEEEccccccccccccEEEEccHHccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccccccHHHHcccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccHHHccccccHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHccccccccHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccc
mepvliesnvngasevhnnnnanvdhgwQKVTYAKrqrktkpgadpsnalvaanggagssgeknNVFRNLEQQAEERHLRIIGARQAALSAAasesaparskhrsddeydedsdaDVAAaengkaeepkkpkqkkpkkpkiTVAEAAAKLDATDLSAFLIDisgtyedkqdIQMMRFADYFGrafsgvtasqfpwmKIFRESTVAKmadiplsqipdvvYKTSIDWinqrspevLGSFVLWCLDSILADvethnvsskaSKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRenakyqgqdklPVIVWMIAQASQGELAVGLYSWAhnllpivggkncnpqSRDIILQLVERILSSPKARTILVNgavrkgerlvppsaLETLLrltfptssarVKATERFEAIYPTLKEValagvpgskamKQVSLQILSFAIKFagestpdlsneaAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEhsaklspldpfRATLKSFRQKnekgiggtADAACQSLLRNADKYCKLVsgklssghgclKSVALAVIAIAVGAafmspnvesldweKISVFFTSQPSI
MEPVLIESNVNGAsevhnnnnanvdhgwQKVTYAKRQRktkpgadpsnALVAANggagssgekNNVFRNLEQQAEERHLRIIGARQAALSaaasesaparskhrsddeydeDSDADVAAaengkaeepkkpkqkkpkkpkITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMadiplsqipdVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKvvqqassksQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERilsspkartilvngavrkgerlvppsaletllrltfptssarvKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEhsaklspldpfrATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQPSI
MEPVLIESNVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSNALVAANGGAGSSGEKNNVFRNLEQQAEERHLRIIGarqaalsaaasesaparsKHRSddeydedsdadvaaaeNGKAEEpkkpkqkkpkkpkITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNvsskaskkvvqqassksqvaIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSvalaviaiavgaaFMSPNVESLDWEKISVFFTSQPSI
*************************************************************************************************************************************************AAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFR*****************VVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETH******************QVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLS******************************IGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFF******
****L*E**VN****************************************************************************************************************************************AKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADV******************SKSQVAIFVALAMVLRRKPDVLIGVLPALR******GQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFP**************IYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAG*STPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEW**************ATLKSFR******************LRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQP**
MEPVLIESNVNGASEVHNNNNANVDHGWQKVTY***********DPSNALVAANGGAGSSGEKNNVFRNLEQQAEERHLRIIGAR********************************************************TVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVET******************SQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSE********LSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQPSI
*EPVLIESNVNGASEVHNNNNANVDHGWQKVTYAKRQ*******************************************IIGARQAALSAA**********************************************PKITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETH***************SKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTS****
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MEPVLIESNVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSNALVAANGGAGSSGEKNNVFRNLEQQAEERHLRIIGARQAALSAAASESAPARSKHRSDDEYDEDSDADVAAAENGKAEEPKKPKQKKPKKPKITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQPSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query594 2.2.26 [Sep-21-2011]
A1L2I9 679 Transmembrane protein 214 N/A no 0.643 0.562 0.232 4e-15
A0JMW6 681 Transmembrane protein 214 N/A no 0.461 0.402 0.249 3e-13
A4FV45 687 Transmembrane protein 214 yes no 0.616 0.532 0.233 3e-10
Q8BM55 687 Transmembrane protein 214 yes no 0.402 0.347 0.252 7e-09
A1L1L2 685 Transmembrane protein 214 yes no 0.402 0.348 0.241 3e-08
Q6NUQ4 689 Transmembrane protein 214 yes no 0.621 0.535 0.232 7e-07
>sp|A1L2I9|T214B_XENLA Transmembrane protein 214-B OS=Xenopus laevis GN=tmem214-b PE=2 SV=1 Back     alignment and function desciption
 Score = 83.6 bits (205), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 106/456 (23%), Positives = 173/456 (37%), Gaps = 74/456 (16%)

Query: 107 DEYDEDSDADVAAAENGKAEEPKK----PKQKKP-------KKPKITVAEAAAK-LDATD 154
           D   +  + +     N  +E+P+K    P +KKP       K+ K    E A K LD  +
Sbjct: 55  DRIHKKQNKEQVPPNNMSSEQPQKQQQNPGKKKPQSGDSVCKQSKFHTLECALKALDVAE 114

Query: 155 LSAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQ 214
           L   L      + +   I +   A Y       V            +  + +  D P   
Sbjct: 115 LQRDLEKSQNMFPENPSIWVKDLAGYLNYKLQTVK----------NDVLIQQSHDYPYCL 164

Query: 215 IPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVA 274
           I   + K  +  +  ++P VL   V  C+ S+L +++     S    ++  QA       
Sbjct: 165 INKEL-KGIVRSLLAKAPHVLDVMVDHCIFSMLQELDKPTGESLHGYRICIQA------- 216

Query: 275 IFVALAMVLRRKPDVLIGVLPALRE--NAKYQGQDKLPVIVWMIAQASQGELAVGLYSWA 332
                  VL  KP  +   LP   E   +      K   ++W + QA   +   GL  W 
Sbjct: 217 -------VLLDKPKTVTSNLPKYLELLRSHLNRPMKCLTVMWAVGQAGFTDFTEGLKVWL 269

Query: 333 HNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRL 392
             + P++G KN  P +   IL L          R +L +  + KG  ++ P     +L  
Sbjct: 270 GLMFPVLGVKNLTPYA---ILYL---------DRLLLAHSNLTKGFGMIGPKDFFPILDF 317

Query: 393 TF-PTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTP--- 448
            F P +S      E    +YP LK +AL   P S         + ++   F   +TP   
Sbjct: 318 AFMPNNSLTPSQQENLRNLYPKLKVLALGATPEST--------LHTYFPSFLSRATPSCP 369

Query: 449 -DLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPF 507
            ++  E       CL + +  +  W +LY  +L  S  +L+ L E W  +S  +      
Sbjct: 370 AEMRKELIHSLTDCLNKDSLSFSVWRQLYTKHLSQSSLLLQHLVETWDSNSRAMR--KSV 427

Query: 508 RATLKSFRQKNEK--GIGGTA------DAACQSLLR 535
           R T+ SF+  N +  G G ++      DAACQ+LL 
Sbjct: 428 RETVHSFKVTNGEFSGKGSSSKDLEACDAACQALLH 463





Xenopus laevis (taxid: 8355)
>sp|A0JMW6|T214A_XENLA Transmembrane protein 214-A OS=Xenopus laevis GN=tmem214-a PE=2 SV=1 Back     alignment and function description
>sp|A4FV45|TM214_BOVIN Transmembrane protein 214 OS=Bos taurus GN=TMEM214 PE=2 SV=1 Back     alignment and function description
>sp|Q8BM55|TM214_MOUSE Transmembrane protein 214 OS=Mus musculus GN=Tmem214 PE=2 SV=1 Back     alignment and function description
>sp|A1L1L2|TM214_RAT Transmembrane protein 214 OS=Rattus norvegicus GN=Tmem214 PE=2 SV=1 Back     alignment and function description
>sp|Q6NUQ4|TM214_HUMAN Transmembrane protein 214 OS=Homo sapiens GN=TMEM214 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
255573742589 conserved hypothetical protein [Ricinus 0.978 0.986 0.675 0.0
449449042591 PREDICTED: uncharacterized protein LOC10 0.947 0.952 0.669 0.0
225424297594 PREDICTED: uncharacterized protein LOC10 0.969 0.969 0.645 0.0
147814802594 hypothetical protein VITISV_007906 [Viti 0.969 0.969 0.643 0.0
224099505567 predicted protein [Populus trichocarpa] 0.942 0.987 0.652 0.0
224111486594 predicted protein [Populus trichocarpa] 0.949 0.949 0.672 0.0
356512296597 PREDICTED: uncharacterized protein LOC10 0.959 0.954 0.631 0.0
356525068599 PREDICTED: uncharacterized protein LOC10 0.947 0.939 0.628 0.0
297737671508 unnamed protein product [Vitis vinifera] 0.833 0.974 0.672 0.0
334182786615 uncharacterized protein [Arabidopsis tha 0.925 0.894 0.607 0.0
>gi|255573742|ref|XP_002527792.1| conserved hypothetical protein [Ricinus communis] gi|223532827|gb|EEF34602.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/592 (67%), Positives = 472/592 (79%), Gaps = 11/592 (1%)

Query: 6   IESNVNGASEVHN-NNNANVDHGWQKVTYAKRQRKTKPGADPSNALVAANG---GAGSSG 61
            ESN+N  +E H   NN N DHGWQKVTYAKRQRK KP AD + A+   NG   G  ++ 
Sbjct: 4   FESNINNNNEDHQITNNHNTDHGWQKVTYAKRQRKQKP-ADTAAAVT--NGKINGTAAAN 60

Query: 62  EKNNVFRNLEQQAEERHLRIIGARQAALSAAASESAPARSKHRSDDEYDEDSDADVAAAE 121
           +K NVFR+LEQQ+EER  RII +++AA      E+AP RSKH   D+ +ED D     A+
Sbjct: 61  DKANVFRSLEQQSEERRRRIIESQRAA---DVPEAAPVRSKHHRSDDDEEDDDDSEDGAK 117

Query: 122 NGKAEEPKKPKQKKPKKPKITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQMMRFADYF 181
             +    KK KQKK KKPK+TVAEAA K+DA+DL+AFL +IS +YE +Q+I +MRFADYF
Sbjct: 118 GNEKAAEKKVKQKKAKKPKVTVAEAAVKIDASDLAAFLAEISESYEGQQEIMLMRFADYF 177

Query: 182 GRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVLGSFVLW 241
           GRAFS V+++QFPW+K+FRE++VAKMADIPLS I D VYKTSIDWINQR+ E LGSFVLW
Sbjct: 178 GRAFSSVSSAQFPWVKLFRENSVAKMADIPLSHISDAVYKTSIDWINQRTIEALGSFVLW 237

Query: 242 CLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENA 301
            LD IL D+ +    SK SKK VQQ SSKSQV +FV LAMVLRRKPD L+ VLP LR+++
Sbjct: 238 SLDCILHDLSSQQTGSKVSKKGVQQVSSKSQVGMFVVLAMVLRRKPDALVNVLPTLRDSS 297

Query: 302 KYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILS 361
           KYQGQDKLPV+ WMIAQ SQG+LAVGLY+WAHNL P+V GK+ NPQSRDIILQLVE+ILS
Sbjct: 298 KYQGQDKLPVVAWMIAQVSQGDLAVGLYAWAHNLFPLVSGKSSNPQSRDIILQLVEKILS 357

Query: 362 SPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAG 421
           SPKARTILV+GAVRKGERLVPP ALE LLR+TFPTSSARVKATERFEAIYPTLK+VALAG
Sbjct: 358 SPKARTILVSGAVRKGERLVPPFALEILLRVTFPTSSARVKATERFEAIYPTLKDVALAG 417

Query: 422 VPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLE 481
             GSKAMKQVSLQIL+FA K AGES P+LS EAAGI IWCLTQ+A+CYKHWDK+Y+ N E
Sbjct: 418 SVGSKAMKQVSLQILNFAFKAAGESNPELSKEAAGICIWCLTQNAECYKHWDKIYQENPE 477

Query: 482 GSVKVLKKLSEEWKEHSAKLSPLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYC 541
            S+ +LKKL EEWKE SAKLSPLDP R TLKSFR+KNEK +    DAA  +LLR+ADKYC
Sbjct: 478 ASIAILKKLLEEWKELSAKLSPLDPLRETLKSFRRKNEKAMASAEDAAKHALLRDADKYC 537

Query: 542 KLVSGKLSSGHGCLKSVALAVIAIAVGAAFMSPNVESLDWEKISVFFTSQPS 593
           K + GKLS G  C K + +AV+A+AVGAA +SPN+ES DW+K++VF  SQ S
Sbjct: 538 KAILGKLSRGRFCTK-MTVAVVALAVGAAIISPNMESWDWKKLAVFVNSQFS 588




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449042|ref|XP_004142274.1| PREDICTED: uncharacterized protein LOC101205264 [Cucumis sativus] gi|449510363|ref|XP_004163644.1| PREDICTED: uncharacterized protein LOC101224709 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225424297|ref|XP_002284658.1| PREDICTED: uncharacterized protein LOC100264607 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147814802|emb|CAN67931.1| hypothetical protein VITISV_007906 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224099505|ref|XP_002311510.1| predicted protein [Populus trichocarpa] gi|222851330|gb|EEE88877.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111486|ref|XP_002315874.1| predicted protein [Populus trichocarpa] gi|222864914|gb|EEF02045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512296|ref|XP_003524856.1| PREDICTED: uncharacterized protein LOC100777797 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356525068|ref|XP_003531149.1| PREDICTED: uncharacterized protein LOC100795409 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|297737671|emb|CBI26872.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334182786|ref|NP_001185070.1| uncharacterized protein [Arabidopsis thaliana] gi|332192230|gb|AEE30351.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
TAIR|locus:2013955610 AT1G70770 "AT1G70770" [Arabido 0.914 0.890 0.559 2.8e-153
TAIR|locus:2081566443 AT3G11880 "AT3G11880" [Arabido 0.713 0.957 0.449 1.6e-86
MGI|MGI:1916046 687 Tmem214 "transmembrane protein 0.410 0.355 0.257 2.1e-08
UNIPROTKB|Q6NUQ4 689 TMEM214 "Transmembrane protein 0.409 0.352 0.245 2.8e-07
UNIPROTKB|A4FV45 687 TMEM214 "Transmembrane protein 0.409 0.353 0.238 9e-07
RGD|1311324 685 Tmem214 "transmembrane protein 0.412 0.357 0.228 1.2e-06
TAIR|locus:2060969156 AT2G18070 "AT2G18070" [Arabido 0.099 0.378 0.424 0.00032
TAIR|locus:2013955 AT1G70770 "AT1G70770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1495 (531.3 bits), Expect = 2.8e-153, P = 2.8e-153
 Identities = 317/567 (55%), Positives = 377/567 (66%)

Query:     1 MEPVLIES-NVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSNA----LVAANG 55
             M+P  IES   NG       +N NVDHGW+KV Y KR RK K  AD + A     VA+NG
Sbjct:     1 MDP--IESVEYNG----FETSNGNVDHGWKKVVYPKRHRKQKQ-ADQATANGGKTVASNG 53

Query:    56 GAGSSGEKNNVFRNLEQQAEERHLRIIGXXXXXXXXXXXXXXXXXXKHRSXXXXXXXXXX 115
                + G+  NVFR+LE+QAE+R  RI+                   KHRS          
Sbjct:    54 TVANGGD--NVFRSLEEQAEDRRRRILAAKMTAIDSDDDGVVRS--KHRSNGYGDDGYDF 109

Query:   116 XXXXXXNG--KAEEXXXXXXXXXXXXXITVAEAAAKLDATDLSAFLIDISGTYEDKQDIQ 173
                       K EE             +++ EAA+K+D  +L AFL++ S +Y  + +IQ
Sbjct:   110 DGSDDEIATLKVEEVKKPKPKKEKKPKVSLPEAASKIDPLNLEAFLVEASESYASQPEIQ 169

Query:   174 MMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPE 233
             +MRFADYFGRA SGV++ QFPW+K+F+ES ++K+ ++PL+ IP+ VYKTS+DWIN R  E
Sbjct:   170 LMRFADYFGRALSGVSSVQFPWVKMFKESPLSKLIEVPLAHIPEPVYKTSVDWINHRPIE 229

Query:   234 VLGSFVLWCLDSILADVETHNXXXXXXXXXXXXXXXXXXXXIFVALAMVLRRKPDVLIGV 293
              LG+FVLW  D IL D+                        IFVALAMVLRRKPD L  V
Sbjct:   230 ALGAFVLWAFDCILTDLAAQQGGAKGGKKGGQQTTSKSQVAIFVALAMVLRRKPDALTNV 289

Query:   294 LPALRENAKYQGQDKLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIIL 353
             LP LREN KYQGQDKLPV VWM+AQASQG++AVGLYSWAHNLLP+VG KNCNPQSRD+IL
Sbjct:   290 LPTLRENPKYQGQDKLPVTVWMMAQASQGDIAVGLYSWAHNLLPVVGNKNCNPQSRDLIL 349

Query:   354 QLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFPTSSARVKATERFEAIYPT 413
             QLVE+IL++PKARTILVNGAVRKGERL+PP + E LLRLTFP SSARVKATERFEAIYP 
Sbjct:   350 QLVEKILTNPKARTILVNGAVRKGERLIPPPSFEILLRLTFPASSARVKATERFEAIYPL 409

Query:   414 LKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWD 473
             LKEVALAG PGSKAMKQV+ QI +FA+K AGE  P L+ EA  I IW +TQ+ DC KHWD
Sbjct:   410 LKEVALAGAPGSKAMKQVTQQIFTFALKLAGEGNPVLAKEATAIAIWSVTQNFDCCKHWD 469

Query:   474 KLYEANLEGSVKVLKKLSEEWKEHSAKLS--PLDPF--RATLKSFRQKNEKGIGGTADAA 529
              LY+ NLE SV VLKKL EEWKEHS KLS  P D      T+KSFR KNE+ I  T   A
Sbjct:   470 NLYKENLEASVAVLKKLVEEWKEHSVKLSSSPNDALTLNRTMKSFRLKNEEVI--TEGGA 527

Query:   530 CQSLLRNADKYCKLVSGKLSSGHGCLK 556
               SL + ADK CK +SG+LS G GCLK
Sbjct:   528 NASLYKEADKSCKTISGRLSRGSGCLK 554




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
TAIR|locus:2081566 AT3G11880 "AT3G11880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1916046 Tmem214 "transmembrane protein 214" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6NUQ4 TMEM214 "Transmembrane protein 214" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A4FV45 TMEM214 "Transmembrane protein 214" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1311324 Tmem214 "transmembrane protein 214" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2060969 AT2G18070 "AT2G18070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pm.C_LG_VIII0567
hypothetical protein (568 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
pfam10151 469 pfam10151, DUF2359, Uncharacterized conserved prot 1e-10
>gnl|CDD|150784 pfam10151, DUF2359, Uncharacterized conserved protein (DUF2359) Back     alignment and domain information
 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 64/239 (26%), Positives = 94/239 (39%), Gaps = 34/239 (14%)

Query: 312 IVWMIAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVN 371
           I+W + QA    L  GL  W   +LP++G K  +P +   I  L          R +L++
Sbjct: 42  IMWALGQAGFTNLTQGLRVWLGIMLPVLGVKALSPYA---IAYL---------ERLLLLH 89

Query: 372 GAVRKGERLVPPSALETLLRLTF-PTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQ 430
             + KG  ++ P     LL   F P +S      E+   +YP LK +A    P S     
Sbjct: 90  DNLTKGFGMLGPKDFFPLLDFAFMPNNSLSPSLQEQLCRLYPRLKVLAFGAKPES----- 144

Query: 431 VSLQ--ILSFAIKFAGESTP-DLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVL 487
            +L     SF +  A  S P ++  E       CL      +  W +LY  +L  S  +L
Sbjct: 145 -TLHTYFPSF-LSRATPSCPAEMKKELLDSLTECLEVDPLSFSVWRQLYPKHLSQSSLLL 202

Query: 488 KKLSEEWKEHSAKLSPLDPFRATLKSFRQKNE----KGIGG-----TADAACQSLLRNA 537
             L + W     KL      + T++SF+  N     KG          D ACQ LL   
Sbjct: 203 YHLLKTWNTLPKKLR--KSLQETVQSFKVTNSELTSKGSASLQDLEDCDTACQVLLEKM 259


This is a 450 amino acid region of a family of proteins conserved from insects to humans. The mouse protein, Q8BM55, is annotated as being a putative Vitamin K-dependent carboxylation gamma-carboxyglutamic (GLA) domain containing protein, but this could not be confirmed. The function is not known. Length = 469

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 594
KOG4467557 consensus Uncharacterized conserved protein [Funct 100.0
PF10151 469 DUF2359: Uncharacterised conserved protein (DUF235 100.0
KOG4467 557 consensus Uncharacterized conserved protein [Funct 99.64
PF04147840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 92.37
PTZ00429746 beta-adaptin; Provisional 84.55
>KOG4467 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=5.5e-134  Score=1033.00  Aligned_cols=535  Identities=58%  Similarity=0.865  Sum_probs=507.6

Q ss_pred             CCCcceec-cccCccccccCCCCCCCCCcceeehhhhhcCCCCCCCCCcccc---ccCCCCCCCCCcchhhHHHHHhHHH
Q 007667            1 MEPVLIES-NVNGASEVHNNNNANVDHGWQKVTYAKRQRKTKPGADPSNALV---AANGGAGSSGEKNNVFRNLEQQAEE   76 (594)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~hgw~kv~~~k~~r~~~~~~~~~~~~~---~~~g~~~~~~~~~~~f~~~~~~~~~   76 (594)
                      |.|  ||+ .+||+++    .++.+||||+||+||||+|||+|++++++.+|   .+||+ +++|+ .||||+||.|||+
T Consensus         1 mdp--iesveynGFet----~ngn~dhgWkkvvyPkr~rkqk~adqa~a~gg~t~~~ngt-~~ngg-~nvfrSLeeqAe~   72 (557)
T KOG4467|consen    1 MDP--IESVEYNGFET----LNGNDDHGWKKVVYPKRNRKQKPADQAAALGGVTLIPNGT-LSNGG-GNVFRSLEEQAET   72 (557)
T ss_pred             CCh--HHhhhhccccc----cCCCcccceeeeecccccccccchhhhhhcCCceeccCcc-ccCCC-cchhhcccHHHHH
Confidence            889  898 8899887    35558999999999999999999999998776   89998 76666 8999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccCCcccc-CCCCCCCCCCcchhhHHhhhcCCCCCCCCCCCCCCCCCcccHHHHHhcCCHHHH
Q 007667           77 RHLRIIGARQAALSAAASESAPARS-KHRSDDEYDEDSDADVAAAENGKAEEPKKPKQKKPKKPKITVAEAAAKLDATDL  155 (594)
Q Consensus        77 r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~e~kK~k~kkpkkPK~SLeeAa~~Id~~dL  155 (594)
                      ||+||++|+..+.++++++..||+| +++++|+++|+||++.+.+ ..+.+|.|||||||.||||+||.||+.+||+-.|
T Consensus        73 r~~riLaak~~~~~~d~~~~~rsk~rsnGyGd~GyDFd~sd~eia-~lk~eevkkpkpkk~kkPkvsL~Eaa~kidplnl  151 (557)
T KOG4467|consen   73 RLDRILAAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIA-VLKLEEVKKPKPKKSKKPKVSLQEAACKIDPLNL  151 (557)
T ss_pred             HHHHHHhcCCCccccccccccchhhccccCCccccccCCccchhh-eeeHHHhcccCcccccCCcccHHHHHhccCHHHH
Confidence            9999999999999999999999999 9999999999999987543 4779999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCccHHHHHHHHHHHHhhhccCCccCCcchhhhhcCccccccccCCCCCCChHHHHHHHHHhhhcCchhH
Q 007667          156 SAFLIDISGTYEDKQDIQMMRFADYFGRAFSGVTASQFPWMKIFRESTVAKMADIPLSQIPDVVYKTSIDWINQRSPEVL  235 (594)
Q Consensus       156 ~~~L~~v~~sfp~~p~iwLk~~AdYln~~ls~V~s~qfpw~kmf~ep~lsk~~DyPLs~ip~~v~ktsidwi~q~~~~~L  235 (594)
                      .+||++.+                                              .||+|||++||+++.+||+|+|++++
T Consensus       152 ~AFlveas----------------------------------------------~pL~Hipepvyktsadwin~rPiEal  185 (557)
T KOG4467|consen  152 LAFLVEAS----------------------------------------------SPLSHIPEPVYKTSADWINQRPIEAL  185 (557)
T ss_pred             HHHhcCCC----------------------------------------------CccccCCcchhhccCCccccCCHHHH
Confidence            99987643                                              68999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCcccchhhhhcccccchHHHHHHHHHHhhcChhHHHhhHHHHHHhhhhhCCCchhHHHHH
Q 007667          236 GSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLIGVLPALRENAKYQGQDKLPVIVWM  315 (594)
Q Consensus       236 ~~Fv~~~L~~mltdL~~~qg~~k~~~~~~q~~~~~s~vG~~V~LQmIlr~kP~il~~~L~kl~~ns~~nr~~k~lsilWa  315 (594)
                      +.|+.|.+++|+.|+..+|||.+|||||.||++|+++|.+|+.|+|++|.+|+.+++.||++++|.+|++|+++|+++||
T Consensus       186 gafvlw~~dCil~Dla~qqgg~kggkKg~qQs~Sksqvaifvalamvlr~kPdaltn~LptlrenpKyqgQdkLpvtvwm  265 (557)
T KOG4467|consen  186 GAFVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVALAMVLRQKPDALTNSLPTLRENPKYQGQDKLPVTVWM  265 (557)
T ss_pred             HHHHHHHHHHHhccHHHHhhhhhhcccccccccchhHHHHHHHHHHHHHhccHHHHHhhHHHHhCccccCcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccchhhHHHHHHHhhhhcccCCCCCcchHHHHHHHHHHHhcCccchhhhcccccccCCcccCchhHHHHHHhhCC
Q 007667          316 IAQASQGELAVGLYSWAHNLLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTFP  395 (594)
Q Consensus       316 igQAg~~DL~vGL~vW~~iLLPvL~~Ks~sp~srdlilqylErILs~~kar~il~n~av~kg~~lI~p~~f~~ll~~tfP  395 (594)
                      ++||+|||.+||+|.|.|+++||++.|+|+|++||||+|+||+||.+||||+|++|+++|+|||+|||.+|++|+|+|||
T Consensus       266 maqasQgDi~vglyswahnLlpVvg~k~cnPqsRdLiLqLVe~il~npkaRtilvngAvrkGeRLipppsFeil~rltfP  345 (557)
T KOG4467|consen  266 MAQASQGDIVVGLYSWAHNLLPVVGPKSCNPQSRDLILQLVEAILLNPKARTILVNGAVRKGERLIPPPSFEILVRLTFP  345 (557)
T ss_pred             hhccccCCeeeeehhhhcccccccCCCCCCchHHHHHHHHHHHHHcCchHhHHhhhhhhhcCccccCCCcchhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhHHHHHHHhccchhhhhhcCCCCchhHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHhhccCchHHHHHHHH
Q 007667          396 TSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKL  475 (594)
Q Consensus       396 ~~sarvkaterfeaiYP~LKelAlag~p~S~a~Kqv~qqiF~~~L~~a~~~~~~l~kE~~~~lI~CLt~d~dC~k~Wr~l  475 (594)
                      ++++|+|++|||++|||.|||++++|.|||++||||+||||++.++.+++.||-|++|+..++||.+|+|.||+++|.++
T Consensus       346 ASsArvKaterfeaiYplLkEv~lagapGSkamkqVtqqiftfAlk~age~np~Lakeaaai~iW~~tqn~Dcckhw~nl  425 (557)
T KOG4467|consen  346 ASSARVKATERFEAIYPLLKEVSLAGAPGSKAMKQVTQQIFTFALKHAGETNPFLAKEAAAILIWFGTQNVDCCKHWSNL  425 (557)
T ss_pred             cHHHHHHHHHHHHhhhHHHHhhhccCCCchHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhhhhccCCCch--HHHHHHHHHhcCcccccCCcchhchhhHHHHHHHHHHHHhhhcCCCc
Q 007667          476 YEANLEGSVKVLKKLSEEWKEHSAKLSPLDP--FRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKLSSGHG  553 (594)
Q Consensus       476 Y~knl~qS~~LL~~L~~~W~~~s~KL~~~~~--L~~Tlksfr~~Ne~~~~~~~~~~~~~~~k~adk~Ck~il~kls~~~~  553 (594)
                      |+.||++|+++|++++.+|+|++.||.|.+.  ++.||+|||.+|||++++|  +.++++|++|||+||+|.||++++ +
T Consensus       426 y~~nL~aSVavLkkll~ewkE~svkL~p~~~ltlN~tmkslr~kneEalteg--g~~~slyk~adk~Ck~i~G~ls~g-g  502 (557)
T KOG4467|consen  426 YQINLPASVAVLKKLLGEWKELSVKLLPAETLTLNVTMKSLRHKNEEALTEG--GVSQSLYKHADKACKVIAGELSWG-G  502 (557)
T ss_pred             HHhhchhHHHHHHHHHHHHHhcccccCchhhhHHhhhHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHhhcCccccc-c
Confidence            9999999999999999999999999987776  6899999999999999999  899999999999999999999888 9


Q ss_pred             chhHHHHHHHHHH----HhhhhcCCC----------CCccchhhHHHHhhcCCC
Q 007667          554 CLKSVALAVIAIA----VGAAFMSPN----------VESLDWEKISVFFTSQPS  593 (594)
Q Consensus       554 ~~~~~~~~~~~~a----~~a~~~s~~----------~~~~~~~~~~~~~~~~~~  593 (594)
                      |+++.+..++-+|    ++|+|+|.|          +|++|.+|+++.+++.+.
T Consensus       503 CmKt~astav~laa~g~a~aavls~npea~a~lknlv~sl~ink~te~v~talk  556 (557)
T KOG4467|consen  503 CMKTQASTAVHLAALGLADAAVLSLNPEALALLKNLVESLDINKFTETVMTALK  556 (557)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence            9998765554444    366889988          788999999999887653



>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans Back     alignment and domain information
>KOG4467 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.2 bits (150), Expect = 4e-10
 Identities = 62/388 (15%), Positives = 117/388 (30%), Gaps = 103/388 (26%)

Query: 196 MKIFRESTVAKMADIPLSQIPD----VVYKTSIDWINQRSPEVLGS-FVLWCL------- 243
           + +F ++ V    +     + D    ++ K  ID I      V G+  + W L       
Sbjct: 22  LSVFEDAFVD---NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 244 -----DSILAD----------VETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPD 288
                + +L             E    S      + Q+    +   +F     V R +P 
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQP- 136

Query: 289 VLIGVLPALRENAKYQGQDKLPVIV---------WMIAQAS-----QGELAVGLYSWAHN 334
                   LR  A  + +    V++         W+          Q ++   ++ W + 
Sbjct: 137 -----YLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLN- 188

Query: 335 LLPIVGGKNCNPQSRDIILQLVERILSSPKARTILVNGAVRKGERLVPPSALETLLRLTF 394
               +   NCN     ++  L + +       T   + +     +L   S    L RL  
Sbjct: 189 ----LK--NCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLK 239

Query: 395 PTSSAR-------VKATERFEA------IYPTLKEVALAGVPGSKAMKQVSL-------- 433
                        V+  + + A      I  T +   +     +     +SL        
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 434 --QILSFAIKFAGESTPDLSNEAAGIF------IWCLTQSA----DCYKH--WDKLYEAN 479
             ++ S  +K+      DL  E           I    +      D +KH   DKL    
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI- 358

Query: 480 LEGSVKVLKKLSEEWKEHSAKLS--PLD 505
           +E S+ VL+    E+++   +LS  P  
Sbjct: 359 IESSLNVLE--PAEYRKMFDRLSVFPPS 384


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00